Query 036636
Match_columns 341
No_of_seqs 145 out of 1138
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 9.4E-61 2E-65 454.1 36.1 326 1-339 86-431 (431)
2 cd05472 cnd41_like Chloroplast 100.0 1.9E-57 4.2E-62 414.7 32.9 290 1-336 3-299 (299)
3 cd05489 xylanase_inhibitor_I_l 100.0 1.7E-55 3.6E-60 409.6 33.4 319 6-334 2-361 (362)
4 KOG1339 Aspartyl protease [Pos 100.0 1.5E-54 3.3E-59 409.4 32.1 319 1-337 48-397 (398)
5 PTZ00165 aspartyl protease; Pr 100.0 5.2E-54 1.1E-58 410.1 31.2 286 1-339 122-451 (482)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 4E-54 8.7E-59 397.1 28.9 279 1-337 5-326 (326)
7 cd05486 Cathespin_E Cathepsin 100.0 6.3E-54 1.4E-58 394.4 28.2 283 1-333 2-316 (316)
8 cd05490 Cathepsin_D2 Cathepsin 100.0 1.5E-53 3.3E-58 393.4 27.9 284 1-333 8-325 (325)
9 cd05476 pepsin_A_like_plant Ch 100.0 4.5E-53 9.7E-58 379.3 29.2 257 1-336 3-265 (265)
10 cd05478 pepsin_A Pepsin A, asp 100.0 4.8E-53 1E-57 388.7 27.8 280 1-333 12-317 (317)
11 cd05477 gastricsin Gastricsins 100.0 1E-52 2.3E-57 386.7 29.8 283 1-334 5-318 (318)
12 cd05473 beta_secretase_like Be 100.0 3.4E-52 7.4E-57 389.9 28.3 307 1-340 5-351 (364)
13 cd06098 phytepsin Phytepsin, a 100.0 4.4E-52 9.5E-57 382.1 27.8 273 1-333 12-317 (317)
14 cd05487 renin_like Renin stimu 100.0 7.4E-52 1.6E-56 382.2 28.1 283 1-334 10-326 (326)
15 cd05475 nucellin_like Nucellin 100.0 2.7E-51 5.8E-56 369.1 29.6 259 1-336 4-273 (273)
16 cd05488 Proteinase_A_fungi Fun 100.0 4.2E-51 9.1E-56 376.2 29.0 284 1-333 12-320 (320)
17 cd05485 Cathepsin_D_like Cathe 100.0 5.1E-51 1.1E-55 376.8 28.5 295 1-333 13-329 (329)
18 PTZ00147 plasmepsin-1; Provisi 100.0 3E-51 6.6E-56 388.3 27.6 281 1-335 141-450 (453)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.1E-50 2.4E-55 383.7 28.1 280 2-335 141-449 (450)
20 cd05474 SAP_like SAPs, pepsin- 100.0 8E-50 1.7E-54 364.0 26.3 268 1-334 4-295 (295)
21 cd06097 Aspergillopepsin_like 100.0 1.5E-48 3.3E-53 352.4 24.2 252 1-333 2-278 (278)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.5E-46 3.2E-51 345.7 18.7 282 1-334 3-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.6E-43 7.8E-48 318.0 29.1 267 1-333 2-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.5E-30 3.3E-35 215.9 13.0 151 1-159 2-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 6.7E-27 1.5E-31 193.8 14.6 149 180-333 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 5.5E-21 1.2E-25 147.9 11.1 94 2-118 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.0 2.9E-05 6.3E-10 57.8 8.0 91 1-120 4-94 (96)
28 PF13650 Asp_protease_2: Aspar 96.9 0.021 4.5E-07 41.6 10.4 89 2-119 1-89 (90)
29 TIGR02281 clan_AA_DTGA clan AA 96.1 0.052 1.1E-06 42.4 8.6 90 2-120 14-103 (121)
30 cd05479 RP_DDI RP_DDI; retrope 95.8 0.13 2.8E-06 40.3 9.8 27 305-331 98-124 (124)
31 PF08284 RVP_2: Retroviral asp 95.4 0.05 1.1E-06 43.3 6.3 29 306-334 104-132 (135)
32 TIGR02281 clan_AA_DTGA clan AA 94.4 1.1 2.3E-05 34.9 11.2 36 178-231 9-44 (121)
33 TIGR03698 clan_AA_DTGF clan AA 94.3 0.17 3.8E-06 38.5 6.4 24 306-329 84-107 (107)
34 cd05479 RP_DDI RP_DDI; retrope 94.1 0.86 1.9E-05 35.6 10.1 87 2-120 19-107 (124)
35 PF11925 DUF3443: Protein of u 92.2 5 0.00011 37.2 13.2 58 60-121 82-149 (370)
36 PF12384 Peptidase_A2B: Ty3 tr 90.4 1 2.3E-05 36.6 6.2 22 210-231 46-67 (177)
37 cd05484 retropepsin_like_LTR_2 89.0 0.47 1E-05 34.7 3.2 24 1-26 2-25 (91)
38 PF13650 Asp_protease_2: Aspar 88.5 0.71 1.5E-05 33.2 3.9 21 211-231 11-31 (90)
39 cd06095 RP_RTVL_H_like Retrope 86.5 5.6 0.00012 28.7 7.6 21 4-26 3-23 (86)
40 cd05484 retropepsin_like_LTR_2 84.6 1.8 3.8E-05 31.6 4.2 30 187-231 4-33 (91)
41 PF13975 gag-asp_proteas: gag- 84.2 1.9 4E-05 30.1 4.0 20 212-231 22-41 (72)
42 cd05483 retropepsin_like_bacte 82.2 2.5 5.5E-05 30.6 4.3 21 211-231 15-35 (96)
43 PF02160 Peptidase_A3: Caulifl 81.4 2.3 5.1E-05 36.0 4.2 51 267-333 67-117 (201)
44 cd06095 RP_RTVL_H_like Retrope 80.2 2.6 5.7E-05 30.4 3.6 21 211-231 11-31 (86)
45 COG3577 Predicted aspartyl pro 78.2 6.4 0.00014 33.4 5.7 61 8-94 112-180 (215)
46 PF00077 RVP: Retroviral aspar 77.5 3.2 6.9E-05 30.7 3.5 23 2-26 8-30 (100)
47 PF00077 RVP: Retroviral aspar 72.6 3.6 7.7E-05 30.4 2.7 18 211-228 18-35 (100)
48 COG5550 Predicted aspartyl pro 71.8 2.9 6.3E-05 32.3 2.0 20 212-231 29-49 (125)
49 TIGR03698 clan_AA_DTGF clan AA 70.4 40 0.00086 25.4 8.0 66 1-86 1-71 (107)
50 PF13975 gag-asp_proteas: gag- 70.1 5.1 0.00011 27.8 2.8 23 2-26 11-33 (72)
51 cd05482 HIV_retropepsin_like R 65.5 7.8 0.00017 28.2 3.1 22 3-26 2-23 (87)
52 PF12384 Peptidase_A2B: Ty3 tr 65.4 8.2 0.00018 31.6 3.4 25 2-26 35-59 (177)
53 cd05481 retropepsin_like_LTR_1 64.2 9.1 0.0002 28.2 3.3 21 211-231 12-32 (93)
54 cd06094 RP_Saci_like RP_Saci_l 62.7 52 0.0011 24.0 6.8 21 209-229 9-29 (89)
55 COG3577 Predicted aspartyl pro 60.2 20 0.00042 30.6 4.8 36 178-231 103-138 (215)
56 KOG0012 DNA damage inducible p 59.6 62 0.0013 30.0 8.2 39 296-334 307-346 (380)
57 PF09668 Asp_protease: Asparty 48.9 24 0.00052 27.6 3.4 30 187-231 28-57 (124)
58 cd00303 retropepsin_like Retro 27.7 55 0.0012 21.9 2.4 22 3-26 2-23 (92)
59 cd06098 phytepsin Phytepsin, a 26.9 69 0.0015 29.2 3.4 16 211-226 25-40 (317)
60 cd06096 Plasmepsin_5 Plasmepsi 25.4 61 0.0013 29.7 2.8 16 211-226 18-33 (326)
61 cd05475 nucellin_like Nucellin 25.1 72 0.0016 28.4 3.1 24 3-26 165-191 (273)
62 PRK09784 hypothetical protein; 24.1 1.2E+02 0.0026 26.4 4.1 42 186-234 358-400 (417)
63 cd06097 Aspergillopepsin_like 23.3 54 0.0012 29.2 1.9 16 211-226 15-30 (278)
64 PTZ00165 aspartyl protease; Pr 21.3 68 0.0015 31.4 2.3 16 211-226 135-150 (482)
65 cd05474 SAP_like SAPs, pepsin- 21.2 73 0.0016 28.4 2.4 14 211-224 17-30 (295)
66 cd05476 pepsin_A_like_plant Ch 20.1 75 0.0016 28.0 2.2 15 211-225 16-30 (265)
67 cd05477 gastricsin Gastricsins 20.0 89 0.0019 28.4 2.7 16 211-226 18-33 (318)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=9.4e-61 Score=454.14 Aligned_cols=326 Identities=31% Similarity=0.565 Sum_probs=266.8
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE--------------EecCCCCCCceeecCCCCCCCC----CCCCCC-CceeEEe
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA--------------IFDPRKSSSFQKINCDHPDCTY----FKCVNE-QCVYTMK 61 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv--------------~y~p~~Sst~~~~~c~~~~C~~----~~c~~~-~~~~~~~ 61 (341)
+++|.||||||++.|+|||||+++|| .|||++|+||+.++|.+..|.. ..|..+ .|.|.+.
T Consensus 86 ~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 86 LMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS 165 (431)
T ss_pred EEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence 47999999999999999999999999 6999999999999999999986 237543 4999999
Q ss_pred cCCCceeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCchHHhhhcccCCceEEec
Q 036636 62 YADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCL 141 (341)
Q Consensus 62 Y~~G~~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs~~l 141 (341)
|+||+.+.|.+++|+|+|++..+....++++.|||++...+. +....+||||||+..+|++.||...+.++||+||
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~----f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL 241 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT----FDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCL 241 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC----ccCCCceeEecCCCCccHHHHhhHhhCCcEEEEC
Confidence 999988899999999999543333337899999999987762 2235799999999999999999877777999999
Q ss_pred CCCCCCCCCcceeEEEcCCCCCCCCCceeeeeecCC-CCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccce
Q 036636 142 VIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINHP-NNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVL 220 (341)
Q Consensus 142 ~~~~~~~~~~~G~l~fGg~d~~~~~~~~~~pl~~~~-~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~ 220 (341)
.+...... ..|.|+||+......+.+.|+|++.+. +.+|.|.|++|+||++++.++...+. ..+..++||||||++
T Consensus 242 ~~~~~~~~-~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~ 318 (431)
T PLN03146 242 VPLSSDSN-GTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTL 318 (431)
T ss_pred CCCCCCCC-CcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccc
Confidence 76322111 179999999643333458999998543 57999999999999999887665553 123567999999999
Q ss_pred eeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcCCCeEEEEE
Q 036636 221 TYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAV 300 (341)
Q Consensus 221 ~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~~~~~C~~~ 300 (341)
++||+++|++|.+++.+++....... . ...+..||.... ...+|+|+|+|+|+++.+++++ |++...++..|+++
T Consensus 319 t~Lp~~~y~~l~~~~~~~~~~~~~~~-~--~~~~~~C~~~~~-~~~~P~i~~~F~Ga~~~l~~~~-~~~~~~~~~~Cl~~ 393 (431)
T PLN03146 319 TLLPSDFYSELESAVEEAIGGERVSD-P--QGLLSLCYSSTS-DIKLPIITAHFTGADVKLQPLN-TFVKVSEDLVCFAM 393 (431)
T ss_pred eecCHHHHHHHHHHHHHHhccccCCC-C--CCCCCccccCCC-CCCCCeEEEEECCCeeecCcce-eEEEcCCCcEEEEE
Confidence 99999999999999998876332221 1 234668997541 2468999999999999999999 88877667799998
Q ss_pred ecCCCCceeechhhccceEEEEECCCCEEEEEcCCCCCC
Q 036636 301 APHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCSDD 339 (341)
Q Consensus 301 ~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~c~~~ 339 (341)
.+.. ..+|||+.|||++||+||.+++|||||+++|+..
T Consensus 394 ~~~~-~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 394 IPTS-SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred ecCC-CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 7643 3699999999999999999999999999999863
No 2
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.9e-57 Score=414.74 Aligned_cols=290 Identities=33% Similarity=0.582 Sum_probs=238.8
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEEEEEEEEEEEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVI 80 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G~~~~D~v~i~ 80 (341)
+++|.||||||++.|+|||||+++||.+ . .| |.|.+.|++|+.+.|.+++|+|+|
T Consensus 3 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~c-------------~-------~c----~~~~i~Yg~Gs~~~G~~~~D~v~i- 57 (299)
T cd05472 3 VVTVGLGTPARDQTVIVDTGSDLTWVQC-------------Q-------PC----CLYQVSYGDGSYTTGDLATDTLTL- 57 (299)
T ss_pred EEEEecCCCCcceEEEecCCCCcccccC-------------C-------CC----CeeeeEeCCCceEEEEEEEEEEEe-
Confidence 4789999999999999999999999921 1 13 889999999977899999999999
Q ss_pred ecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCchHHhhhcccCCceEEecCCCCCCCCCcceeEEEcCC
Q 036636 81 GKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTD 160 (341)
Q Consensus 81 ~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs~~l~~~~~~~~~~~G~l~fGg~ 160 (341)
++...++++.|||++.+.+ .+...+||||||+..++++.|+..+.+++||+||.+..... .|+|+|||+
T Consensus 58 ---g~~~~~~~~~Fg~~~~~~~-----~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~~~---~G~l~fGg~ 126 (299)
T cd05472 58 ---GSSDVVPGFAFGCGHDNEG-----LFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSS---SGYLSFGAA 126 (299)
T ss_pred ---CCCCccCCEEEECCccCCC-----ccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCCCC---CceEEeCCc
Confidence 6533688999999998766 23478999999999999999988767899999998753233 899999999
Q ss_pred CCCCCCCceeeeeecCC--CCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccceeeechHHHHHHHHHHHHH
Q 036636 161 MGYRRPSTQATKFINHP--NNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSY 238 (341)
Q Consensus 161 d~~~~~~~~~~pl~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l~~~i~~~ 238 (341)
|.. .+++.|+|++.++ +.+|.|.+++|+|+++.+..+.... .+..+||||||++++||+++|++|.+++.++
T Consensus 127 d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~-----~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~ 200 (299)
T cd05472 127 ASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASF-----GAGGVIIDSGTVITRLPPSAYAALRDAFRAA 200 (299)
T ss_pred ccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCcccc-----CCCCeEEeCCCcceecCHHHHHHHHHHHHHH
Confidence 966 8899999998764 4799999999999999876542211 2567999999999999999999999999887
Q ss_pred hhhcccccCCCCCCCCCceeecC-CCCCCCCeEEEEEc-CcEEEeeCCCcEEEE-cCCCeEEEEEecC--CCCceeechh
Q 036636 239 FERFQLAQLSDCPEPIQLCYFLP-ETFNRFPSMAFYFE-DANLRIDGENVFIID-YENHFFLLAVAPH--DDLVALIGSQ 313 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~C~~~~-~~~~~~P~i~f~f~-g~~~~i~~~~~y~~~-~~~~~~C~~~~~~--~~~~~ilG~~ 313 (341)
........ . ...++.|+..+ .....+|+|+|+|+ |+.++|++++ |+.. ...+..|+++... ..+.+|||+.
T Consensus 201 ~~~~~~~~-~--~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~-y~~~~~~~~~~C~~~~~~~~~~~~~ilG~~ 276 (299)
T cd05472 201 MAAYPRAP-G--FSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASG-VLYPVDDSSQVCLAFAGTSDDGGLSIIGNV 276 (299)
T ss_pred hccCCCCC-C--CCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCccc-EEEEecCCCCEEEEEeCCCCCCCCEEEchH
Confidence 54322111 0 12344698765 34467999999998 7999999999 8874 3346789988773 4568999999
Q ss_pred hccceEEEEECCCCEEEEEcCCC
Q 036636 314 QQRDTRFVYDLNIDLLSFVKENC 336 (341)
Q Consensus 314 fl~~~yvvfD~~~~riGfa~~~c 336 (341)
|||++|+|||++++|||||+++|
T Consensus 277 fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 277 QQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred HccceEEEEECCCCEEeEecCCC
Confidence 99999999999999999999999
No 3
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.7e-55 Score=409.61 Aligned_cols=319 Identities=23% Similarity=0.368 Sum_probs=260.2
Q ss_pred ecCCCCe-EEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCC---C------------CCCCCCceeEEe-cCCCcee
Q 036636 6 IGTPSKG-VLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTY---F------------KCVNEQCVYTMK-YADQSVT 68 (341)
Q Consensus 6 iGtP~q~-~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~---~------------~c~~~~~~~~~~-Y~~G~~~ 68 (341)
+|||-.+ +.|+|||||+++||.++|.+|+||+.+.|.+..|.. . .|.++.|.|... |++|+..
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t 81 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECA 81 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEe
Confidence 6889888 999999999999999999999999999999999975 1 465566888755 7899999
Q ss_pred EEEEEEEEEEEEecCCCc---eeecceEEecccCCCCCcccccCCCcceeeecCCCCCchHHhhhcc--cCCceEEecCC
Q 036636 69 KGFAAHETISVIGKGEGK---AIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSI--IKKRFSYCLVI 143 (341)
Q Consensus 69 ~G~~~~D~v~i~~~~g~~---~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~--~~~~Fs~~l~~ 143 (341)
.|++++|+|+|+..+++. ..++++.|||++..... ......|||||||++++|++.||..+ .+++||+||.+
T Consensus 82 ~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~---~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~ 158 (362)
T cd05489 82 TGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLK---GLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPS 158 (362)
T ss_pred eEEEEEEEEEecccCCCCcccceeCCEEEEcCCccccc---CCccccccccccCCCccchHHHhhhhcCCCcceEEEeCC
Confidence 999999999997655442 36889999999886421 13345899999999999999999876 35899999987
Q ss_pred CCCCCCCcceeEEEcCCCC-CC------CCCceeeeeecCC--CCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEE
Q 036636 144 PLPNGEYTSSYLKFGTDMG-YR------RPSTQATKFINHP--NNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCII 214 (341)
Q Consensus 144 ~~~~~~~~~G~l~fGg~d~-~~------~~~~~~~pl~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 214 (341)
.. .. .|.|+||+.+. ++ .+.+.|+||+.++ +.+|.|+|++|+||++++.++...+.....+..++||
T Consensus 159 ~~-~~---~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~ii 234 (362)
T cd05489 159 SP-GG---PGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKL 234 (362)
T ss_pred CC-CC---CeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEE
Confidence 52 33 89999999873 22 3789999999764 4799999999999999988766655544445678999
Q ss_pred ccccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecC-C----CCCCCCeEEEEEcC--cEEEeeCCCcE
Q 036636 215 DSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLP-E----TFNRFPSMAFYFED--ANLRIDGENVF 287 (341)
Q Consensus 215 DTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~-~----~~~~~P~i~f~f~g--~~~~i~~~~~y 287 (341)
||||++++||+++|++|.+++.+++....... . .....+.||... . ....+|+|+|+|+| +++.|+|++ |
T Consensus 235 DSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~-~-~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~n-y 311 (362)
T cd05489 235 STVVPYTVLRSDIYRAFTQAFAKATARIPRVP-A-AAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGAN-S 311 (362)
T ss_pred ecCCceEEECHHHHHHHHHHHHHHhcccCcCC-C-CCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCc-e
Confidence 99999999999999999999998875332221 0 011236898754 1 13579999999986 999999999 9
Q ss_pred EEEcCCCeEEEEEecCC---CCceeechhhccceEEEEECCCCEEEEEcC
Q 036636 288 IIDYENHFFLLAVAPHD---DLVALIGSQQQRDTRFVYDLNIDLLSFVKE 334 (341)
Q Consensus 288 ~~~~~~~~~C~~~~~~~---~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 334 (341)
+++..++..|++|.+.+ .+.||||+.|||++|++||.+++|||||+.
T Consensus 312 ~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 312 MVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 98876677999998732 457999999999999999999999999975
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-54 Score=409.44 Aligned_cols=319 Identities=29% Similarity=0.504 Sum_probs=261.7
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE-----E----------ecCCCCCCceeecCCCCCCCC--CCC-CCCCceeEEec
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA-----I----------FDPRKSSSFQKINCDHPDCTY--FKC-VNEQCVYTMKY 62 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv-----~----------y~p~~Sst~~~~~c~~~~C~~--~~c-~~~~~~~~~~Y 62 (341)
+++|.||||||+|+|+|||||+++|| . |||++|+||+.+.|.+..|.. ..| .++.|.|.+.|
T Consensus 48 ~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Y 127 (398)
T KOG1339|consen 48 YGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQY 127 (398)
T ss_pred EEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcCceEEEe
Confidence 47999999999999999999999999 2 999999999999999999997 234 44569999999
Q ss_pred CCCceeEEEEEEEEEEEEecCCC--ceeecceEEecccCCCCCcccccCCCcceeeecCCCCCchHHhhhcc--cCCceE
Q 036636 63 ADQSVTKGFAAHETISVIGKGEG--KAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSI--IKKRFS 138 (341)
Q Consensus 63 ~~G~~~~G~~~~D~v~i~~~~g~--~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~--~~~~Fs 138 (341)
++|+++.|++++|+|++ ++ ...++++.|||++.+.+. .... ...+||||||+..+|++.|+... ..++||
T Consensus 128 gd~~~~~G~l~~Dtv~~----~~~~~~~~~~~~FGc~~~~~g~-~~~~-~~~dGIlGLg~~~~S~~~q~~~~~~~~~~FS 201 (398)
T KOG1339|consen 128 GDGSSTSGYLATDTVTF----GGTTSLPVPNQTFGCGTNNPGS-FGLF-AAFDGILGLGRGSLSVPSQLPSFYNAINVFS 201 (398)
T ss_pred CCCCceeEEEEEEEEEE----ccccccccccEEEEeeecCccc-cccc-cccceEeecCCCCccceeecccccCCceeEE
Confidence 99879999999999999 55 237888999999999762 0122 57899999999999999999886 345799
Q ss_pred EecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccc
Q 036636 139 YCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSG 217 (341)
Q Consensus 139 ~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTG 217 (341)
+||.+...... .+|.|+||+.+ .++.+.+.|+||+.+.+.+|.|.+++|+|+++. ......+.. +..++|+|||
T Consensus 202 ~cL~~~~~~~~-~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~~~~~---~~~~~iiDSG 276 (398)
T KOG1339|consen 202 YCLSSNGSPSS-GGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSSLFCT---DGGGAIIDSG 276 (398)
T ss_pred EEeCCCCCCCC-CCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcceEec---CCCCEEEECC
Confidence 99998743211 18999999988 457788999999998223999999999999977 554444432 1578999999
Q ss_pred cceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecC-CCCCCCCeEEEEEc-CcEEEeeCCCcEEEEcCCCe
Q 036636 218 SVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLP-ETFNRFPSMAFYFE-DANLRIDGENVFIIDYENHF 295 (341)
Q Consensus 218 tt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~-~~~~~~P~i~f~f~-g~~~~i~~~~~y~~~~~~~~ 295 (341)
|++++||+++|++|.+++.+.... ... ...++..|+... .. ..+|.|+|+|+ |+.+.+++++ |+++...+.
T Consensus 277 Ts~t~lp~~~y~~i~~~~~~~~~~-~~~----~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~-y~~~~~~~~ 349 (398)
T KOG1339|consen 277 TSLTYLPTSAYNALREAIGAEVSV-VGT----DGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKN-YLVEVSDGG 349 (398)
T ss_pred cceeeccHHHHHHHHHHHHhheec-ccc----CCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccc-eEEEECCCC
Confidence 999999999999999999886410 001 034566999876 22 45999999999 7999999999 988765443
Q ss_pred E-EEEEecC-CC-CceeechhhccceEEEEECC-CCEEEEEc--CCCC
Q 036636 296 F-LLAVAPH-DD-LVALIGSQQQRDTRFVYDLN-IDLLSFVK--ENCS 337 (341)
Q Consensus 296 ~-C~~~~~~-~~-~~~ilG~~fl~~~yvvfD~~-~~riGfa~--~~c~ 337 (341)
. |+++... .. ..||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 350 ~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 350 GVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 3 9987762 22 58999999999999999999 99999999 7775
No 5
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=5.2e-54 Score=410.11 Aligned_cols=286 Identities=21% Similarity=0.340 Sum_probs=230.7
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE--------------EecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCc
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA--------------IFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQS 66 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv--------------~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~ 66 (341)
+++|.||||||+|+|+|||||++||| .|||++|+||+.+.+.. ....+.++|++|
T Consensus 122 ~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~----------~~~~~~i~YGsG- 190 (482)
T PTZ00165 122 FGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD----------ESAETYIQYGTG- 190 (482)
T ss_pred EEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC----------ccceEEEEeCCC-
Confidence 46899999999999999999999999 68888888887743211 112577999999
Q ss_pred eeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCC---------chHHhhhcc--c-C
Q 036636 67 VTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTI---------SFISQLGSI--I-K 134 (341)
Q Consensus 67 ~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~---------s~~~ql~~~--~-~ 134 (341)
++.|.++.|+|++ |+. .++++.||+++.+.+.. ......|||||||++.+ +++.+|.++ + +
T Consensus 191 s~~G~l~~DtV~i----g~l-~i~~q~FG~a~~~s~~~--f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~ 263 (482)
T PTZ00165 191 ECVLALGKDTVKI----GGL-KVKHQSIGLAIEESLHP--FADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKR 263 (482)
T ss_pred cEEEEEEEEEEEE----CCE-EEccEEEEEEEeccccc--cccccccceeecCCCcccccccCCCCCHHHHHHHcCCccc
Confidence 7889999999999 887 99999999999875521 12357899999998764 355677765 3 5
Q ss_pred CceEEecCCCCCCCCCcceeEEEcCCCCC-C--CCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCc
Q 036636 135 KRFSYCLVIPLPNGEYTSSYLKFGTDMGY-R--RPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGG 211 (341)
Q Consensus 135 ~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~-~--~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 211 (341)
++||+||.+.. .. +|+|+|||+|.+ + .+++.|+|+... .+|+|.+++|+++++.+.... +...
T Consensus 264 ~~FS~yL~~~~-~~---~G~l~fGGiD~~~~~~~g~i~~~Pv~~~--~yW~i~l~~i~vgg~~~~~~~--------~~~~ 329 (482)
T PTZ00165 264 NIFSFYMSKDL-NQ---PGSISFGSADPKYTLEGHKIWWFPVIST--DYWEIEVVDILIDGKSLGFCD--------RKCK 329 (482)
T ss_pred ceEEEEeccCC-CC---CCEEEeCCcCHHHcCCCCceEEEEcccc--ceEEEEeCeEEECCEEeeecC--------CceE
Confidence 89999998642 33 799999999854 3 468999999875 899999999999998765431 2567
Q ss_pred eEEccccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCc-----EEEeeCCCc
Q 036636 212 CIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDA-----NLRIDGENV 286 (341)
Q Consensus 212 ~iiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~-----~~~i~~~~~ 286 (341)
||+||||+++++|++++++|.+++... .+|.... .+|+|+|+|+|. ++.++|++
T Consensus 330 aIiDTGTSli~lP~~~~~~i~~~i~~~----------------~~C~~~~----~lP~itf~f~g~~g~~v~~~l~p~d- 388 (482)
T PTZ00165 330 AAIDTGSSLITGPSSVINPLLEKIPLE----------------EDCSNKD----SLPRISFVLEDVNGRKIKFDMDPED- 388 (482)
T ss_pred EEEcCCCccEeCCHHHHHHHHHHcCCc----------------ccccccc----cCCceEEEECCCCCceEEEEEchHH-
Confidence 999999999999999999988877321 2676543 689999999864 89999999
Q ss_pred EEEEc----CCCeEEE-EEec-C----CCCceeechhhccceEEEEECCCCEEEEEcCCCCCC
Q 036636 287 FIIDY----ENHFFLL-AVAP-H----DDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCSDD 339 (341)
Q Consensus 287 y~~~~----~~~~~C~-~~~~-~----~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~c~~~ 339 (341)
|+.+. ..+..|+ ++.. + .++.||||++|||+||+|||.+|+|||||+++|+..
T Consensus 389 Yi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 389 YVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred eeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 98873 2345896 6765 1 246799999999999999999999999999998764
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4e-54 Score=397.10 Aligned_cols=279 Identities=26% Similarity=0.489 Sum_probs=227.7
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE--------------EecCCCCCCceeecCCCCCCCC-CCCCCCCceeEEecCCC
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA--------------IFDPRKSSSFQKINCDHPDCTY-FKCVNEQCVYTMKYADQ 65 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv--------------~y~p~~Sst~~~~~c~~~~C~~-~~c~~~~~~~~~~Y~~G 65 (341)
+++|.||||||+++|+|||||+++|| .|||++|+|++.++|.+..|.. ..|.++.|.|.+.|++|
T Consensus 5 ~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y~~g 84 (326)
T cd06096 5 FIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISYSEG 84 (326)
T ss_pred EEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEECCC
Confidence 47999999999999999999999999 5999999999999999998865 56777789999999999
Q ss_pred ceeEEEEEEEEEEEEecCCCceee-------cceEEecccCCCCCcccccCCCcceeeecCCCCCc-h---HHhhhcc--
Q 036636 66 SVTKGFAAHETISVIGKGEGKAIF-------HGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS-F---ISQLGSI-- 132 (341)
Q Consensus 66 ~~~~G~~~~D~v~i~~~~g~~~~~-------~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s-~---~~ql~~~-- 132 (341)
+.+.|.+++|+|+| ++. .+ .++.|||+..+.+. ......+||||||+...+ . ..+|.++
T Consensus 85 s~~~G~~~~D~v~l----g~~-~~~~~~~~~~~~~fg~~~~~~~~---~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~ 156 (326)
T cd06096 85 SSISGFYFSDFVSF----ESY-LNSNSEKESFKKIFGCHTHETNL---FLTQQATGILGLSLTKNNGLPTPIILLFTKRP 156 (326)
T ss_pred CceeeEEEEEEEEe----ccC-CCCccccccccEEeccCccccCc---ccccccceEEEccCCcccccCchhHHHHHhcc
Confidence 88999999999999 543 22 25789999987762 233578999999997642 1 1122222
Q ss_pred -c--CCceEEecCCCCCCCCCcceeEEEcCCCC-CCC----------CCceeeeeecCCCCeeEEEEeeEEEcCeeeecC
Q 036636 133 -I--KKRFSYCLVIPLPNGEYTSSYLKFGTDMG-YRR----------PSTQATKFINHPNNFYYLSLKDISIDNERMNFP 198 (341)
Q Consensus 133 -~--~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~-~~~----------~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~ 198 (341)
. +++||+||++. .|.|+|||+|. ++. +++.|+|+... .+|.|.+++|+++++.....
T Consensus 157 ~~~~~~~FS~~l~~~-------~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~--~~y~v~l~~i~vg~~~~~~~ 227 (326)
T cd06096 157 KLKKDKIFSICLSED-------GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK--YYYYVKLEGLSVYGTTSNSG 227 (326)
T ss_pred cccCCceEEEEEcCC-------CeEEEECccChhhhcccccccccccCCceEEeccCC--ceEEEEEEEEEEccccccee
Confidence 1 38999999863 79999999883 343 78999999875 89999999999998861110
Q ss_pred CCCccccccCCCceEEccccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEc-Cc
Q 036636 199 PDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFE-DA 277 (341)
Q Consensus 199 ~~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~-g~ 277 (341)
. ..+..+||||||++++||+++|++|.+++ |+|+|.|+ |+
T Consensus 228 ~-------~~~~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~ 268 (326)
T cd06096 228 N-------TKGLGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFENNL 268 (326)
T ss_pred c-------ccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCc
Confidence 0 12567999999999999999998774333 89999999 79
Q ss_pred EEEeeCCCcEEEEcCCCeEEEEEecCCCCceeechhhccceEEEEECCCCEEEEEcCCCC
Q 036636 278 NLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCS 337 (341)
Q Consensus 278 ~~~i~~~~~y~~~~~~~~~C~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~c~ 337 (341)
.++++|++ |+...+...+|+.+... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 269 ~~~i~p~~-y~~~~~~~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 269 KIDWKPSS-YLYKKESFWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEEECHHH-hccccCCceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999999 98876545566665543 358999999999999999999999999999995
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=6.3e-54 Score=394.40 Aligned_cols=283 Identities=18% Similarity=0.257 Sum_probs=224.7
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE--------------EecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCc
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA--------------IFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQS 66 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv--------------~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~ 66 (341)
+++|.||||||+++|+|||||+++|| .|||++|+|++. .+|.+++.|++|
T Consensus 2 ~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~---------------~~~~~~i~Yg~g- 65 (316)
T cd05486 2 FGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVS---------------NGEAFSIQYGTG- 65 (316)
T ss_pred eEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCccccc---------------CCcEEEEEeCCc-
Confidence 47899999999999999999999999 345555555443 458999999999
Q ss_pred eeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCc------hHHhhhcc--c-CCce
Q 036636 67 VTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS------FISQLGSI--I-KKRF 137 (341)
Q Consensus 67 ~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~~--~-~~~F 137 (341)
++.|.+++|+|+| ++. .++++.||++..+.+.. ......+||||||++.++ ++.+|.++ + +++|
T Consensus 66 ~~~G~~~~D~v~i----g~~-~~~~~~fg~~~~~~~~~--~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~F 138 (316)
T cd05486 66 SLTGIIGIDQVTV----EGI-TVQNQQFAESVSEPGST--FQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMF 138 (316)
T ss_pred EEEEEeeecEEEE----CCE-EEcCEEEEEeeccCccc--ccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEE
Confidence 7899999999999 777 89999999988765421 123478999999987654 45677665 4 5799
Q ss_pred EEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEcc
Q 036636 138 SYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDS 216 (341)
Q Consensus 138 s~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDT 216 (341)
|+||.+..... . .|+|+|||+| .++.+++.|+|+... .+|.|.+++|+|+++.+..+ ....+||||
T Consensus 139 S~~L~~~~~~~-~-~g~l~fGg~d~~~~~g~l~~~pi~~~--~~w~v~l~~i~v~g~~~~~~---------~~~~aiiDT 205 (316)
T cd05486 139 SVYMSRNPNSA-D-GGELVFGGFDTSRFSGQLNWVPVTVQ--GYWQIQLDNIQVGGTVIFCS---------DGCQAIVDT 205 (316)
T ss_pred EEEEccCCCCC-C-CcEEEEcccCHHHcccceEEEECCCc--eEEEEEeeEEEEecceEecC---------CCCEEEECC
Confidence 99998742221 1 7999999998 467899999999874 89999999999999876432 145799999
Q ss_pred ccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEc--CCC
Q 036636 217 GSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDY--ENH 294 (341)
Q Consensus 217 Gtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~--~~~ 294 (341)
||+++++|++++++|.+.+.+.. .. ..+..+|... ..+|+|+|+|+|+.++|+|++ |+... ..+
T Consensus 206 GTs~~~lP~~~~~~l~~~~~~~~----~~-----~~~~~~C~~~----~~~p~i~f~f~g~~~~l~~~~-y~~~~~~~~~ 271 (316)
T cd05486 206 GTSLITGPSGDIKQLQNYIGATA----TD-----GEYGVDCSTL----SLMPSVTFTINGIPYSLSPQA-YTLEDQSDGG 271 (316)
T ss_pred CcchhhcCHHHHHHHHHHhCCcc----cC-----CcEEEecccc----ccCCCEEEEECCEEEEeCHHH-eEEecccCCC
Confidence 99999999999999987774321 11 1233367653 368999999999999999999 98765 234
Q ss_pred eEEE-EEec-----CCCCceeechhhccceEEEEECCCCEEEEEc
Q 036636 295 FFLL-AVAP-----HDDLVALIGSQQQRDTRFVYDLNIDLLSFVK 333 (341)
Q Consensus 295 ~~C~-~~~~-----~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 333 (341)
..|+ ++.. ...+.||||+.|||++|+|||.+++|||||+
T Consensus 272 ~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 272 GYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 6897 5654 1245799999999999999999999999996
No 8
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.5e-53 Score=393.41 Aligned_cols=284 Identities=19% Similarity=0.319 Sum_probs=224.3
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEE----------------ecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCC
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAI----------------FDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYAD 64 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~----------------y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~ 64 (341)
+++|.||||||+++|+|||||+++||. |+|++|+|++. .+|.+.+.|++
T Consensus 8 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~---------------~~~~~~i~Yg~ 72 (325)
T cd05490 8 YGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVK---------------NGTEFAIQYGS 72 (325)
T ss_pred EEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceee---------------CCcEEEEEECC
Confidence 478999999999999999999999993 44444554443 35899999999
Q ss_pred CceeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCc------hHHhhhcc--c-CC
Q 036636 65 QSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS------FISQLGSI--I-KK 135 (341)
Q Consensus 65 G~~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~~--~-~~ 135 (341)
| ++.|.+++|+|+| |+. .++++.|||++.+.+.. ......+||||||++..+ ++.+|.++ + ++
T Consensus 73 G-~~~G~~~~D~v~~----g~~-~~~~~~Fg~~~~~~~~~--~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~ 144 (325)
T cd05490 73 G-SLSGYLSQDTVSI----GGL-QVEGQLFGEAVKQPGIT--FIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQN 144 (325)
T ss_pred c-EEEEEEeeeEEEE----CCE-EEcCEEEEEEeeccCCc--ccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCC
Confidence 9 6899999999999 887 89999999998876521 122467999999987654 45577765 3 58
Q ss_pred ceEEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEE
Q 036636 136 RFSYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCII 214 (341)
Q Consensus 136 ~Fs~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 214 (341)
+||+||.+..... .+|+|+|||+| .++.+++.|+|+... .+|.|.+++|+|++...... ....+||
T Consensus 145 ~FS~~L~~~~~~~--~~G~l~~Gg~d~~~~~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~---------~~~~aii 211 (325)
T cd05490 145 VFSFYLNRDPDAQ--PGGELMLGGTDPKYYTGDLHYVNVTRK--AYWQIHMDQVDVGSGLTLCK---------GGCEAIV 211 (325)
T ss_pred EEEEEEeCCCCCC--CCCEEEECccCHHHcCCceEEEEcCcc--eEEEEEeeEEEECCeeeecC---------CCCEEEE
Confidence 9999998642221 17999999988 457799999999764 89999999999987643221 2457999
Q ss_pred ccccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcC--
Q 036636 215 DSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYE-- 292 (341)
Q Consensus 215 DTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~-- 292 (341)
||||+++++|++++++|.+++.+.. ... ..+..+|... ..+|+|+|+|+|+.++|+|++ |+.+..
T Consensus 212 DSGTt~~~~p~~~~~~l~~~~~~~~---~~~-----~~~~~~C~~~----~~~P~i~f~fgg~~~~l~~~~-y~~~~~~~ 278 (325)
T cd05490 212 DTGTSLITGPVEEVRALQKAIGAVP---LIQ-----GEYMIDCEKI----PTLPVISFSLGGKVYPLTGED-YILKVSQR 278 (325)
T ss_pred CCCCccccCCHHHHHHHHHHhCCcc---ccC-----CCEEeccccc----ccCCCEEEEECCEEEEEChHH-eEEeccCC
Confidence 9999999999999999988885421 111 2234478754 368999999999999999999 987653
Q ss_pred CCeEEE-EEec-----CCCCceeechhhccceEEEEECCCCEEEEEc
Q 036636 293 NHFFLL-AVAP-----HDDLVALIGSQQQRDTRFVYDLNIDLLSFVK 333 (341)
Q Consensus 293 ~~~~C~-~~~~-----~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 333 (341)
....|+ ++.. .....||||+.|||++|+|||++++|||||+
T Consensus 279 ~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 279 GTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 235797 5654 2345799999999999999999999999996
No 9
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=4.5e-53 Score=379.34 Aligned_cols=257 Identities=37% Similarity=0.671 Sum_probs=220.2
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEEEEEEEEEEEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVI 80 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G~~~~D~v~i~ 80 (341)
+++|.||||||++.|+|||||+++||. | |.+.+.|++|+.+.|.+++|+|+|
T Consensus 3 ~~~i~iGtP~q~~~v~~DTGSs~~wv~-----------------------~----~~~~~~Y~dg~~~~G~~~~D~v~~- 54 (265)
T cd05476 3 LVTLSIGTPPQPFSLIVDTGSDLTWTQ-----------------------C----CSYEYSYGDGSSTSGVLATETFTF- 54 (265)
T ss_pred EEEEecCCCCcceEEEecCCCCCEEEc-----------------------C----CceEeEeCCCceeeeeEEEEEEEe-
Confidence 479999999999999999999999992 1 678999999989999999999999
Q ss_pred ecCCCce-eecceEEecccCCCCCcccccCCCcceeeecCCCCCchHHhhhcccCCceEEecCCCC-CCCCCcceeEEEc
Q 036636 81 GKGEGKA-IFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPL-PNGEYTSSYLKFG 158 (341)
Q Consensus 81 ~~~g~~~-~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs~~l~~~~-~~~~~~~G~l~fG 158 (341)
++.. .++++.|||++.+.+ ......+||||||+..+|++.||..+- ++||+||.+.. ... .|+|+||
T Consensus 55 ---g~~~~~~~~~~Fg~~~~~~~----~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~~~~~~~~---~G~l~fG 123 (265)
T cd05476 55 ---GDSSVSVPNVAFGCGTDNEG----GSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVPHDDTGG---SSPLILG 123 (265)
T ss_pred ---cCCCCccCCEEEEecccccC----CccCCCCEEEECCCCcccHHHHhhccc-CeeEEEccCCCCCCC---CCeEEEC
Confidence 5432 678999999999875 234678999999999999999998664 89999998742 223 8999999
Q ss_pred CCCCCCCCCceeeeeecCC--CCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccceeeechHHHHHHHHHHH
Q 036636 159 TDMGYRRPSTQATKFINHP--NNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFV 236 (341)
Q Consensus 159 g~d~~~~~~~~~~pl~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l~~~i~ 236 (341)
++|..+.+++.|+|++.++ ..+|.|.+++|+|+++.+.++...+.........+||||||++++||+++|
T Consensus 124 g~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~-------- 195 (265)
T cd05476 124 DAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY-------- 195 (265)
T ss_pred CcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc--------
Confidence 9985588999999999753 589999999999999988754433332233467899999999999997644
Q ss_pred HHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEc-CcEEEeeCCCcEEEEcCCCeEEEEEecC-CCCceeechhh
Q 036636 237 SYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFE-DANLRIDGENVFIIDYENHFFLLAVAPH-DDLVALIGSQQ 314 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~-g~~~~i~~~~~y~~~~~~~~~C~~~~~~-~~~~~ilG~~f 314 (341)
|+|+|+|+ |..+.+++++ |+.....+..|+++... ..+.||||++|
T Consensus 196 -------------------------------P~i~~~f~~~~~~~i~~~~-y~~~~~~~~~C~~~~~~~~~~~~ilG~~f 243 (265)
T cd05476 196 -------------------------------PDLTLHFDGGADLELPPEN-YFVDVGEGVVCLAILSSSSGGVSILGNIQ 243 (265)
T ss_pred -------------------------------CCEEEEECCCCEEEeCccc-EEEECCCCCEEEEEecCCCCCcEEEChhh
Confidence 78999999 7999999999 98876667899998874 57789999999
Q ss_pred ccceEEEEECCCCEEEEEcCCC
Q 036636 315 QRDTRFVYDLNIDLLSFVKENC 336 (341)
Q Consensus 315 l~~~yvvfD~~~~riGfa~~~c 336 (341)
||++|++||.+++|||||+++|
T Consensus 244 l~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 244 QQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred cccEEEEEECCCCEEeeecCCC
Confidence 9999999999999999999999
No 10
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4.8e-53 Score=388.70 Aligned_cols=280 Identities=19% Similarity=0.283 Sum_probs=225.2
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEE--------------ecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCc
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAI--------------FDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQS 66 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~--------------y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~ 66 (341)
+++|.||||||++.|+|||||+++||. |||++|+|++. .++.+.+.|++|
T Consensus 12 ~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~---------------~~~~~~~~yg~g- 75 (317)
T cd05478 12 YGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQS---------------TGQPLSIQYGTG- 75 (317)
T ss_pred EEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceee---------------CCcEEEEEECCc-
Confidence 478999999999999999999999993 33333443332 358899999999
Q ss_pred eeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCC------chHHhhhcc--c-CCce
Q 036636 67 VTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTI------SFISQLGSI--I-KKRF 137 (341)
Q Consensus 67 ~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~ql~~~--~-~~~F 137 (341)
++.|.+++|+|+| |+. .++++.|||++...+.. ......+||||||++.+ +++.+|.++ + +++|
T Consensus 76 s~~G~~~~D~v~i----g~~-~i~~~~fg~~~~~~~~~--~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~F 148 (317)
T cd05478 76 SMTGILGYDTVQV----GGI-SDTNQIFGLSETEPGSF--FYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLF 148 (317)
T ss_pred eEEEEEeeeEEEE----CCE-EECCEEEEEEEecCccc--cccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEE
Confidence 5899999999999 887 89999999998765521 11245799999998653 477888876 4 5899
Q ss_pred EEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEcc
Q 036636 138 SYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDS 216 (341)
Q Consensus 138 s~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDT 216 (341)
|+||.+.. .. +|.|+|||+| .++.+++.|+|+... .+|.|.+++++|+++.+... .+..+||||
T Consensus 149 S~~L~~~~-~~---~g~l~~Gg~d~~~~~g~l~~~p~~~~--~~w~v~l~~v~v~g~~~~~~---------~~~~~iiDT 213 (317)
T cd05478 149 SVYLSSNG-QQ---GSVVTFGGIDPSYYTGSLNWVPVTAE--TYWQITVDSVTINGQVVACS---------GGCQAIVDT 213 (317)
T ss_pred EEEeCCCC-CC---CeEEEEcccCHHHccCceEEEECCCC--cEEEEEeeEEEECCEEEccC---------CCCEEEECC
Confidence 99999852 22 7999999998 557899999999864 89999999999999987542 245799999
Q ss_pred ccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcCCCeE
Q 036636 217 GSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFF 296 (341)
Q Consensus 217 Gtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~~~~~ 296 (341)
||++++||++++++|.+++.+... .. .....+|+.. ..+|.|+|+|+|++++|||++ |+... ...
T Consensus 214 Gts~~~lp~~~~~~l~~~~~~~~~---~~-----~~~~~~C~~~----~~~P~~~f~f~g~~~~i~~~~-y~~~~--~~~ 278 (317)
T cd05478 214 GTSLLVGPSSDIANIQSDIGASQN---QN-----GEMVVNCSSI----SSMPDVVFTINGVQYPLPPSA-YILQD--QGS 278 (317)
T ss_pred CchhhhCCHHHHHHHHHHhCCccc---cC-----CcEEeCCcCc----ccCCcEEEEECCEEEEECHHH-heecC--CCE
Confidence 999999999999999988854321 01 1122367654 368999999999999999999 98765 468
Q ss_pred EE-EEec-CCCCceeechhhccceEEEEECCCCEEEEEc
Q 036636 297 LL-AVAP-HDDLVALIGSQQQRDTRFVYDLNIDLLSFVK 333 (341)
Q Consensus 297 C~-~~~~-~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 333 (341)
|+ ++.. .....||||++|||++|+|||++++|||||+
T Consensus 279 C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 279 CTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 88 4655 3356899999999999999999999999996
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1e-52 Score=386.74 Aligned_cols=283 Identities=19% Similarity=0.341 Sum_probs=228.0
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE--------------EecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCc
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA--------------IFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQS 66 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv--------------~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~ 66 (341)
+++|.||||||++.|+|||||+++|| .|||++|+|++. .+|.|++.|++|
T Consensus 5 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~---------------~~~~~~~~Yg~G- 68 (318)
T cd05477 5 YGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYST---------------NGETFSLQYGSG- 68 (318)
T ss_pred EEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceE---------------CCcEEEEEECCc-
Confidence 47999999999999999999999999 255555555443 458999999999
Q ss_pred eeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCC------CchHHhhhcc--c-CCce
Q 036636 67 VTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVT------ISFISQLGSI--I-KKRF 137 (341)
Q Consensus 67 ~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~--~-~~~F 137 (341)
++.|.+++|+|++ |+. .++++.|||++...+.. ......+||||||++. .+++.||.++ + +++|
T Consensus 69 s~~G~~~~D~i~~----g~~-~i~~~~Fg~~~~~~~~~--~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~F 141 (318)
T cd05477 69 SLTGIFGYDTVTV----QGI-IITNQEFGLSETEPGTN--FVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIF 141 (318)
T ss_pred EEEEEEEeeEEEE----CCE-EEcCEEEEEEEeccccc--ccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEE
Confidence 6899999999999 887 89999999999865411 1224679999999853 4678888876 4 5899
Q ss_pred EEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEcc
Q 036636 138 SYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDS 216 (341)
Q Consensus 138 s~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDT 216 (341)
|+||.+..... .|.|+|||+| .++.+++.|+|+... .+|.|.+++|+++++++.... .+..+||||
T Consensus 142 S~~L~~~~~~~---~g~l~fGg~d~~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~~--------~~~~~iiDS 208 (318)
T cd05477 142 SFYLSGQQGQQ---GGELVFGGVDNNLYTGQIYWTPVTSE--TYWQIGIQGFQINGQATGWCS--------QGCQAIVDT 208 (318)
T ss_pred EEEEcCCCCCC---CCEEEEcccCHHHcCCceEEEecCCc--eEEEEEeeEEEECCEEecccC--------CCceeeECC
Confidence 99998753223 7999999998 567799999999874 899999999999998765321 145699999
Q ss_pred ccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcCCCeE
Q 036636 217 GSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFF 296 (341)
Q Consensus 217 Gtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~~~~~ 296 (341)
||++++||++++++|.+.+.++... . ..+..+|... ..+|+|+|+|+|+++.+++++ |+... +..
T Consensus 209 Gtt~~~lP~~~~~~l~~~~~~~~~~---~-----~~~~~~C~~~----~~~p~l~~~f~g~~~~v~~~~-y~~~~--~~~ 273 (318)
T cd05477 209 GTSLLTAPQQVMSTLMQSIGAQQDQ---Y-----GQYVVNCNNI----QNLPTLTFTINGVSFPLPPSA-YILQN--NGY 273 (318)
T ss_pred CCccEECCHHHHHHHHHHhCCcccc---C-----CCEEEeCCcc----ccCCcEEEEECCEEEEECHHH-eEecC--CCe
Confidence 9999999999999999988654321 1 1223467653 368999999999999999999 98865 457
Q ss_pred EE-EEecC------CCCceeechhhccceEEEEECCCCEEEEEcC
Q 036636 297 LL-AVAPH------DDLVALIGSQQQRDTRFVYDLNIDLLSFVKE 334 (341)
Q Consensus 297 C~-~~~~~------~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 334 (341)
|+ ++.+. +...||||++|||++|+|||.+++|||||++
T Consensus 274 C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 274 CTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 86 77541 2347999999999999999999999999985
No 12
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.4e-52 Score=389.88 Aligned_cols=307 Identities=17% Similarity=0.255 Sum_probs=227.6
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE----------EecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA----------IFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKG 70 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv----------~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G 70 (341)
+++|.||||+|++.|+|||||+++|| .|||++|+|++.. +|.|++.|++| ++.|
T Consensus 5 ~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~~~~f~~~~SsT~~~~---------------~~~~~i~Yg~G-s~~G 68 (364)
T cd05473 5 YIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFIHTYFHRELSSTYRDL---------------GKGVTVPYTQG-SWEG 68 (364)
T ss_pred EEEEEecCCCceEEEEEecCCcceEEEcCCCccccccCCchhCcCcccC---------------CceEEEEECcc-eEEE
Confidence 47899999999999999999999999 6777888877653 48999999999 7899
Q ss_pred EEEEEEEEEEecCCCc--eeecceEEecccCCCCCcccccCCCcceeeecCCCCCc--------hHHhhhcc--cCCceE
Q 036636 71 FAAHETISVIGKGEGK--AIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS--------FISQLGSI--IKKRFS 138 (341)
Q Consensus 71 ~~~~D~v~i~~~~g~~--~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s--------~~~ql~~~--~~~~Fs 138 (341)
.+++|+|+| ++. ..+ .+.|++++...+.. ......+||||||++.++ +..+|.++ ++++||
T Consensus 69 ~~~~D~v~i----g~~~~~~~-~~~~~~~~~~~~~~--~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS 141 (364)
T cd05473 69 ELGTDLVSI----PKGPNVTF-RANIAAITESENFF--LNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFS 141 (364)
T ss_pred EEEEEEEEE----CCCCccce-EEeeEEEeccccce--ecccccceeeeecccccccCCCCCCCHHHHHHhccCCccceE
Confidence 999999999 532 111 23455655444310 012357999999987653 44466555 567999
Q ss_pred EecCCC----CC--CCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCc
Q 036636 139 YCLVIP----LP--NGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGG 211 (341)
Q Consensus 139 ~~l~~~----~~--~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 211 (341)
+||... +. ... ..|.|+|||+| .++.+++.|+|++.. .+|.|.+++|+|+++.+..+...+. ...
T Consensus 142 ~~l~~~~~~~~~~~~~~-~~g~l~fGg~D~~~~~g~l~~~p~~~~--~~~~v~l~~i~vg~~~~~~~~~~~~-----~~~ 213 (364)
T cd05473 142 LQMCGAGLPVNGSASGT-VGGSMVIGGIDPSLYKGDIWYTPIREE--WYYEVIILKLEVGGQSLNLDCKEYN-----YDK 213 (364)
T ss_pred EEecccccccccccccC-CCcEEEeCCcCHhhcCCCceEEecCcc--eeEEEEEEEEEECCEeccccccccc-----Ccc
Confidence 987531 00 111 17999999998 567899999999875 8999999999999998765433221 246
Q ss_pred eEEccccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecC-CCCCCCCeEEEEEcC------cEEEeeCC
Q 036636 212 CIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLP-ETFNRFPSMAFYFED------ANLRIDGE 284 (341)
Q Consensus 212 ~iiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~-~~~~~~P~i~f~f~g------~~~~i~~~ 284 (341)
+||||||++++||+++|++|.+++.++........ ..+......|+... .....+|+|+|+|+| ..++|+|+
T Consensus 214 ~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~ 292 (364)
T cd05473 214 AIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPD-GFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQ 292 (364)
T ss_pred EEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCc-cccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHH
Confidence 99999999999999999999999988754211111 00011224787654 222469999999985 36899999
Q ss_pred CcEEEEcC---CCeEEEEEec-CCCCceeechhhccceEEEEECCCCEEEEEcCCCCCCC
Q 036636 285 NVFIIDYE---NHFFLLAVAP-HDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCSDDS 340 (341)
Q Consensus 285 ~~y~~~~~---~~~~C~~~~~-~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~c~~~~ 340 (341)
+ |+.... .+..|+.+.. ...+.||||+.|||++|+|||.+++|||||+++|+.+.
T Consensus 293 ~-Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~ 351 (364)
T cd05473 293 L-YLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHD 351 (364)
T ss_pred H-hhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccccccc
Confidence 9 987542 2468976433 33457999999999999999999999999999998753
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.4e-52 Score=382.09 Aligned_cols=273 Identities=18% Similarity=0.282 Sum_probs=215.4
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEE---------------ecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCC
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAI---------------FDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQ 65 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~---------------y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G 65 (341)
+++|.||||||+++|+|||||+++||. |||++|+|+ ...+..+.+.|++|
T Consensus 12 ~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~---------------~~~~~~~~i~Yg~G 76 (317)
T cd06098 12 FGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTY---------------KKNGTSASIQYGTG 76 (317)
T ss_pred EEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCc---------------ccCCCEEEEEcCCc
Confidence 478999999999999999999999993 333333333 33457889999999
Q ss_pred ceeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCc------hHHhhhcc--c-CCc
Q 036636 66 SVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS------FISQLGSI--I-KKR 136 (341)
Q Consensus 66 ~~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~~--~-~~~ 136 (341)
++.|.+++|+|++ |+. .++++.||+++.+.+.. ......+||||||+..++ ++.+|.++ + +++
T Consensus 77 -~~~G~~~~D~v~i----g~~-~v~~~~f~~~~~~~~~~--~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~ 148 (317)
T cd06098 77 -SISGFFSQDSVTV----GDL-VVKNQVFIEATKEPGLT--FLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPV 148 (317)
T ss_pred -eEEEEEEeeEEEE----CCE-EECCEEEEEEEecCCcc--ccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCE
Confidence 6899999999999 777 89999999998765421 123578999999987654 34566655 4 579
Q ss_pred eEEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEc
Q 036636 137 FSYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIID 215 (341)
Q Consensus 137 Fs~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiD 215 (341)
||+||.+..... . .|+|+|||+| .++.++++|+|+... .+|.|.+++|+|+++++.... ....+|||
T Consensus 149 FS~~L~~~~~~~-~-~G~l~fGg~d~~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~~--------~~~~aivD 216 (317)
T cd06098 149 FSFWLNRNPDEE-E-GGELVFGGVDPKHFKGEHTYVPVTRK--GYWQFEMGDVLIGGKSTGFCA--------GGCAAIAD 216 (317)
T ss_pred EEEEEecCCCCC-C-CcEEEECccChhhcccceEEEecCcC--cEEEEEeCeEEECCEEeeecC--------CCcEEEEe
Confidence 999998642211 1 7999999998 567899999999864 899999999999998765432 14579999
Q ss_pred cccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcC--C
Q 036636 216 SGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYE--N 293 (341)
Q Consensus 216 TGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~--~ 293 (341)
|||+++++|+++++++. ...+|+... .+|+|+|+|+|+.++|+|++ |+.+.. .
T Consensus 217 TGTs~~~lP~~~~~~i~--------------------~~~~C~~~~----~~P~i~f~f~g~~~~l~~~~-yi~~~~~~~ 271 (317)
T cd06098 217 SGTSLLAGPTTIVTQIN--------------------SAVDCNSLS----SMPNVSFTIGGKTFELTPEQ-YILKVGEGA 271 (317)
T ss_pred cCCcceeCCHHHHHhhh--------------------ccCCccccc----cCCcEEEEECCEEEEEChHH-eEEeecCCC
Confidence 99999999998776542 112587542 68999999999999999999 987653 2
Q ss_pred CeEEE-EEec-----CCCCceeechhhccceEEEEECCCCEEEEEc
Q 036636 294 HFFLL-AVAP-----HDDLVALIGSQQQRDTRFVYDLNIDLLSFVK 333 (341)
Q Consensus 294 ~~~C~-~~~~-----~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 333 (341)
...|+ ++.. ...+.||||++|||++|+|||++++|||||+
T Consensus 272 ~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 272 AAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 35897 5653 1245799999999999999999999999996
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=7.4e-52 Score=382.17 Aligned_cols=283 Identities=16% Similarity=0.260 Sum_probs=223.0
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEE----------------ecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCC
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAI----------------FDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYAD 64 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~----------------y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~ 64 (341)
+++|.||||+|+++|+|||||+++||. |||++|+|++. .+|.+++.|++
T Consensus 10 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~---------------~~~~~~~~Yg~ 74 (326)
T cd05487 10 YGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKE---------------NGTEFTIHYAS 74 (326)
T ss_pred EEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeE---------------CCEEEEEEeCC
Confidence 478999999999999999999999992 44444444443 46899999999
Q ss_pred CceeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCc------hHHhhhcc--c-CC
Q 036636 65 QSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS------FISQLGSI--I-KK 135 (341)
Q Consensus 65 G~~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~~--~-~~ 135 (341)
| ++.|.+++|+|++ ++. .+ ++.||++....... ......+||||||++..+ ++.+|.++ + ++
T Consensus 75 g-~~~G~~~~D~v~~----g~~-~~-~~~fg~~~~~~~~~--~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~ 145 (326)
T cd05487 75 G-TVKGFLSQDIVTV----GGI-PV-TQMFGEVTALPAIP--FMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKED 145 (326)
T ss_pred c-eEEEEEeeeEEEE----CCE-Ee-eEEEEEEEeccCCc--cceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCC
Confidence 9 6999999999999 776 66 47899988754310 123568999999987543 45566665 4 68
Q ss_pred ceEEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEE
Q 036636 136 RFSYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCII 214 (341)
Q Consensus 136 ~Fs~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 214 (341)
+||+||.+..... ..|+|+|||+| .++.+++.|+|+... .+|+|.+++++++++.+... .+..+||
T Consensus 146 ~FS~~L~~~~~~~--~~G~l~fGg~d~~~y~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~---------~~~~aii 212 (326)
T cd05487 146 VFSVYYSRDSSHS--LGGEIVLGGSDPQHYQGDFHYINTSKT--GFWQIQMKGVSVGSSTLLCE---------DGCTAVV 212 (326)
T ss_pred EEEEEEeCCCCCC--CCcEEEECCcChhhccCceEEEECCcC--ceEEEEecEEEECCEEEecC---------CCCEEEE
Confidence 9999998753111 27999999998 567899999998764 89999999999999876542 1457999
Q ss_pred ccccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcC--
Q 036636 215 DSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYE-- 292 (341)
Q Consensus 215 DTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~-- 292 (341)
||||++++||+++++++.+++.+... . ..+..+|... ..+|+|+|+|+|..++|++++ |+.+..
T Consensus 213 DSGts~~~lP~~~~~~l~~~~~~~~~----~-----~~y~~~C~~~----~~~P~i~f~fgg~~~~v~~~~-yi~~~~~~ 278 (326)
T cd05487 213 DTGASFISGPTSSISKLMEALGAKER----L-----GDYVVKCNEV----PTLPDISFHLGGKEYTLSSSD-YVLQDSDF 278 (326)
T ss_pred CCCccchhCcHHHHHHHHHHhCCccc----C-----CCEEEecccc----CCCCCEEEEECCEEEEeCHHH-hEEeccCC
Confidence 99999999999999999888854321 1 2234478754 368999999999999999999 888754
Q ss_pred CCeEEE-EEec-----CCCCceeechhhccceEEEEECCCCEEEEEcC
Q 036636 293 NHFFLL-AVAP-----HDDLVALIGSQQQRDTRFVYDLNIDLLSFVKE 334 (341)
Q Consensus 293 ~~~~C~-~~~~-----~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 334 (341)
.+..|+ ++.. ...+.||||++|||++|+|||++++|||||++
T Consensus 279 ~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 279 SDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 245786 5654 12358999999999999999999999999986
No 15
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.7e-51 Score=369.15 Aligned_cols=259 Identities=28% Similarity=0.428 Sum_probs=213.5
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEEEEEEEEEEEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVI 80 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G~~~~D~v~i~ 80 (341)
+++|.||||||++.|+|||||+++||.++. .|. .| .|.|.+.|++|+.+.|.+++|+|+++
T Consensus 4 ~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~---------~c~-------~c---~c~~~i~Ygd~~~~~G~~~~D~v~~~ 64 (273)
T cd05475 4 YVTINIGNPPKPYFLDIDTGSDLTWLQCDA---------PCT-------GC---QCDYEIEYADGGSSMGVLVTDIFSLK 64 (273)
T ss_pred EEEEEcCCCCeeEEEEEccCCCceEEeCCC---------CCC-------CC---cCccEeEeCCCCceEEEEEEEEEEEe
Confidence 478999999999999999999999994310 121 22 58999999988899999999999997
Q ss_pred ecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCchHHhhhcc--cCCceEEecCCCCCCCCCcceeEEEc
Q 036636 81 GKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSI--IKKRFSYCLVIPLPNGEYTSSYLKFG 158 (341)
Q Consensus 81 ~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~--~~~~Fs~~l~~~~~~~~~~~G~l~fG 158 (341)
..+++. .++++.|||++.+.+.. .......+||||||+...+++.||..+ ++++||+||++. . +|.|+||
T Consensus 65 ~~~~~~-~~~~~~Fgc~~~~~~~~-~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~~---~---~g~l~~G 136 (273)
T cd05475 65 LTNGSR-AKPRIAFGCGYDQQGPL-LNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSN---G---GGFLFFG 136 (273)
T ss_pred ecCCCc-ccCCEEEEeeeccCCcc-cCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEEEccCC---C---CeEEEEC
Confidence 666666 78899999998765421 012347899999999999999999876 678999999872 3 7999998
Q ss_pred CCCCCCCCCceeeeeecCC-CCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccceeeechHHHHHHHHHHHH
Q 036636 159 TDMGYRRPSTQATKFINHP-NNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVS 237 (341)
Q Consensus 159 g~d~~~~~~~~~~pl~~~~-~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l~~~i~~ 237 (341)
+. .++.+++.|+|+..++ ..+|.|++.+|+|+++.+.. ....+||||||++++||+++|
T Consensus 137 ~~-~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~----------~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 137 DD-LVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGG----------KGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CC-CCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcC----------CCceEEEECCCceEEcCCccc---------
Confidence 54 3456789999998753 47999999999999985321 256799999999999998754
Q ss_pred HhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcC----cEEEeeCCCcEEEEcCCCeEEEEEecC----CCCcee
Q 036636 238 YFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFED----ANLRIDGENVFIIDYENHFFLLAVAPH----DDLVAL 309 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g----~~~~i~~~~~y~~~~~~~~~C~~~~~~----~~~~~i 309 (341)
+|+|+|+|++ ++++|+|++ |+.....+..|++++.. ..+.||
T Consensus 197 -----------------------------~p~i~~~f~~~~~~~~~~l~~~~-y~~~~~~~~~Cl~~~~~~~~~~~~~~i 246 (273)
T cd05475 197 -----------------------------FKPLTLKFGKGWRTRLLEIPPEN-YLIISEKGNVCLGILNGSEIGLGNTNI 246 (273)
T ss_pred -----------------------------cccEEEEECCCCceeEEEeCCCc-eEEEcCCCCEEEEEecCCCcCCCceEE
Confidence 2789999987 699999999 98876556789988762 245799
Q ss_pred echhhccceEEEEECCCCEEEEEcCCC
Q 036636 310 IGSQQQRDTRFVYDLNIDLLSFVKENC 336 (341)
Q Consensus 310 lG~~fl~~~yvvfD~~~~riGfa~~~c 336 (341)
||+.|||++|+|||.+++|||||+++|
T Consensus 247 lG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 247 IGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ECceEEEeeEEEEECcCCEeCcccCCC
Confidence 999999999999999999999999999
No 16
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4.2e-51 Score=376.18 Aligned_cols=284 Identities=19% Similarity=0.301 Sum_probs=221.4
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCC---------CCCCCCCceeEEecCCCceeEEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTY---------FKCVNEQCVYTMKYADQSVTKGF 71 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~---------~~c~~~~~~~~~~Y~~G~~~~G~ 71 (341)
+++|.||||+|++.|+|||||+++||... .|.+..|.. .+|..++|.+.+.|++| ++.|.
T Consensus 12 ~~~i~iGtp~q~~~v~~DTGSs~~wv~~~----------~C~~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g-~~~G~ 80 (320)
T cd05488 12 FTDITLGTPPQKFKVILDTGSSNLWVPSV----------KCGSIACFLHSKYDSSASSTYKANGTEFKIQYGSG-SLEGF 80 (320)
T ss_pred EEEEEECCCCcEEEEEEecCCcceEEEcC----------CCCCcccCCcceECCCCCcceeeCCCEEEEEECCc-eEEEE
Confidence 47899999999999999999999999321 233333321 23334568999999999 68999
Q ss_pred EEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCchH------Hhhhcc--c-CCceEEecC
Q 036636 72 AAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFI------SQLGSI--I-KKRFSYCLV 142 (341)
Q Consensus 72 ~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~------~ql~~~--~-~~~Fs~~l~ 142 (341)
+++|+|++ ++. .++++.|||++...+.. ......+||||||+...+.. .+|.++ + +++||+||.
T Consensus 81 ~~~D~v~i----g~~-~~~~~~f~~a~~~~g~~--~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~ 153 (320)
T cd05488 81 VSQDTLSI----GDL-TIKKQDFAEATSEPGLA--FAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLG 153 (320)
T ss_pred EEEeEEEE----CCE-EECCEEEEEEecCCCcc--eeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEec
Confidence 99999999 777 89999999998776521 12346799999999876543 244444 4 589999999
Q ss_pred CCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEcccccee
Q 036636 143 IPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLT 221 (341)
Q Consensus 143 ~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~ 221 (341)
+.. .. .|.|+|||+| .++.+++.|+|++.. .+|.|.+++|+++++.+... +..++|||||+++
T Consensus 154 ~~~-~~---~G~l~fGg~d~~~~~g~l~~~p~~~~--~~w~v~l~~i~vg~~~~~~~----------~~~~ivDSGtt~~ 217 (320)
T cd05488 154 SSE-ED---GGEATFGGIDESRFTGKITWLPVRRK--AYWEVELEKIGLGDEELELE----------NTGAAIDTGTSLI 217 (320)
T ss_pred CCC-CC---CcEEEECCcCHHHcCCceEEEeCCcC--cEEEEEeCeEEECCEEeccC----------CCeEEEcCCcccc
Confidence 853 23 7999999998 457799999999864 89999999999999876542 4569999999999
Q ss_pred eechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcCCCeEEEE-E
Q 036636 222 YFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLA-V 300 (341)
Q Consensus 222 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~~~~~C~~-~ 300 (341)
+||++++++|.+++.+... .. ..+..+|.+. ..+|.|+|+|+|++++|+|++ |+.+. ...|+. +
T Consensus 218 ~lp~~~~~~l~~~~~~~~~---~~-----~~~~~~C~~~----~~~P~i~f~f~g~~~~i~~~~-y~~~~--~g~C~~~~ 282 (320)
T cd05488 218 ALPSDLAEMLNAEIGAKKS---WN-----GQYTVDCSKV----DSLPDLTFNFDGYNFTLGPFD-YTLEV--SGSCISAF 282 (320)
T ss_pred cCCHHHHHHHHHHhCCccc---cC-----CcEEeecccc----ccCCCEEEEECCEEEEECHHH-heecC--CCeEEEEE
Confidence 9999999999888753321 01 1222357653 368999999999999999999 98754 347885 4
Q ss_pred ecC-----CCCceeechhhccceEEEEECCCCEEEEEc
Q 036636 301 APH-----DDLVALIGSQQQRDTRFVYDLNIDLLSFVK 333 (341)
Q Consensus 301 ~~~-----~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 333 (341)
... ....||||++|||++|+|||.+++|||||+
T Consensus 283 ~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 283 TGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 431 234799999999999999999999999996
No 17
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.1e-51 Score=376.76 Aligned_cols=295 Identities=17% Similarity=0.263 Sum_probs=222.6
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCC---CCCC-CCCCCCCceeEEecCCCceeEEEEEEEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHP---DCTY-FKCVNEQCVYTMKYADQSVTKGFAAHET 76 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~---~C~~-~~c~~~~~~~~~~Y~~G~~~~G~~~~D~ 76 (341)
+++|.||||+|+++|+|||||+++||...+... ....|... .|.. .+|....|.|.+.|++| ++.|.+++|+
T Consensus 13 ~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~---~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g-~~~G~~~~D~ 88 (329)
T cd05485 13 YGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSW---TNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSG-SLSGFLSTDT 88 (329)
T ss_pred EEEEEECCCCcEEEEEEcCCCccEEEecCCCCC---CCccccCCCeECCcCCCCeEECCeEEEEEECCc-eEEEEEecCc
Confidence 479999999999999999999999993211100 00111100 1111 23333468999999999 5899999999
Q ss_pred EEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCc------hHHhhhcc--c-CCceEEecCCCCCC
Q 036636 77 ISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS------FISQLGSI--I-KKRFSYCLVIPLPN 147 (341)
Q Consensus 77 v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~~--~-~~~Fs~~l~~~~~~ 147 (341)
|++ ++. .++++.||++..+.+.. ......+||||||+...+ ++.+|.++ + +++||+||.+....
T Consensus 89 v~i----g~~-~~~~~~fg~~~~~~~~~--~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 89 VSV----GGV-SVKGQTFAEAINEPGLT--FVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEE----CCE-EECCEEEEEEEecCCcc--ccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 999 877 89999999998765411 123568999999998655 34677665 4 58999999874322
Q ss_pred CCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccceeeechH
Q 036636 148 GEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSD 226 (341)
Q Consensus 148 ~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~ 226 (341)
. ..|+|+|||+| .++.+++.|+|+.. +.+|.|.+++++++++.+.. .+..+||||||+++++|++
T Consensus 162 ~--~~G~l~fGg~d~~~~~g~l~~~p~~~--~~~~~v~~~~i~v~~~~~~~----------~~~~~iiDSGtt~~~lP~~ 227 (329)
T cd05485 162 K--EGGELILGGSDPKHYTGNFTYLPVTR--KGYWQFKMDSVSVGEGEFCS----------GGCQAIADTGTSLIAGPVD 227 (329)
T ss_pred C--CCcEEEEcccCHHHcccceEEEEcCC--ceEEEEEeeEEEECCeeecC----------CCcEEEEccCCcceeCCHH
Confidence 1 17999999998 55779999999976 48999999999999886532 2457999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcC--CCeEEE-EEec-
Q 036636 227 VYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYE--NHFFLL-AVAP- 302 (341)
Q Consensus 227 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~--~~~~C~-~~~~- 302 (341)
++++|.+++.+... .. ..+..+|... .++|+|+|+|+|+++.|+|++ |+.+.. +...|+ +++.
T Consensus 228 ~~~~l~~~~~~~~~---~~-----~~~~~~C~~~----~~~p~i~f~fgg~~~~i~~~~-yi~~~~~~~~~~C~~~~~~~ 294 (329)
T cd05485 228 EIEKLNNAIGAKPI---IG-----GEYMVNCSAI----PSLPDITFVLGGKSFSLTGKD-YVLKVTQMGQTICLSGFMGI 294 (329)
T ss_pred HHHHHHHHhCCccc---cC-----CcEEEecccc----ccCCcEEEEECCEEeEEChHH-eEEEecCCCCCEEeeeEEEC
Confidence 99999888754211 01 1233467643 368999999999999999999 887653 245787 5664
Q ss_pred ----CCCCceeechhhccceEEEEECCCCEEEEEc
Q 036636 303 ----HDDLVALIGSQQQRDTRFVYDLNIDLLSFVK 333 (341)
Q Consensus 303 ----~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 333 (341)
...+.||||+.|||++|+|||++++|||||+
T Consensus 295 ~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 295 DIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 2245799999999999999999999999985
No 18
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3e-51 Score=388.32 Aligned_cols=281 Identities=18% Similarity=0.332 Sum_probs=218.0
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE--------------EecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCc
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA--------------IFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQS 66 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv--------------~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~ 66 (341)
+++|.||||||+++|+|||||++||| .|||++|+|++. .++.+++.|++|
T Consensus 141 ~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~---------------~~~~f~i~Yg~G- 204 (453)
T PTZ00147 141 YGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEK---------------DGTKVEMNYVSG- 204 (453)
T ss_pred EEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEE---------------CCCEEEEEeCCC-
Confidence 36899999999999999999999999 344444444333 458999999999
Q ss_pred eeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCc------hHHhhhcc--c-CCce
Q 036636 67 VTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS------FISQLGSI--I-KKRF 137 (341)
Q Consensus 67 ~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~~--~-~~~F 137 (341)
++.|.+++|+|+| |+. +++ ..|++++...+..........|||||||++.++ ++.+|..+ + +++|
T Consensus 205 svsG~~~~DtVti----G~~-~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vF 278 (453)
T PTZ00147 205 TVSGFFSKDLVTI----GNL-SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVF 278 (453)
T ss_pred CEEEEEEEEEEEE----CCE-EEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEE
Confidence 7999999999999 887 787 578888765542100123468999999998654 45577665 4 5799
Q ss_pred EEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEcc
Q 036636 138 SYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDS 216 (341)
Q Consensus 138 s~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDT 216 (341)
|+||++.. .. .|.|+|||+| .++.+++.|+|+.. ..+|.|.++ +.+++... ....+||||
T Consensus 279 S~~L~~~~-~~---~G~L~fGGiD~~ky~G~l~y~pl~~--~~~W~V~l~-~~vg~~~~------------~~~~aIiDS 339 (453)
T PTZ00147 279 TFYLPPED-KH---KGYLTIGGIEERFYEGPLTYEKLNH--DLYWQVDLD-VHFGNVSS------------EKANVIVDS 339 (453)
T ss_pred EEEecCCC-CC---CeEEEECCcChhhcCCceEEEEcCC--CceEEEEEE-EEECCEec------------CceeEEECC
Confidence 99998742 23 7999999998 55789999999975 489999998 47765421 145799999
Q ss_pred ccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcC--CC
Q 036636 217 GSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYE--NH 294 (341)
Q Consensus 217 Gtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~--~~ 294 (341)
||+++++|+++++++.+++.+... . .. ..+..+|+. ..+|+++|.|+|..++|+|++ |+.... ..
T Consensus 340 GTsli~lP~~~~~ai~~~l~~~~~-~-~~-----~~y~~~C~~-----~~lP~~~f~f~g~~~~L~p~~-yi~~~~~~~~ 406 (453)
T PTZ00147 340 GTSVITVPTEFLNKFVESLDVFKV-P-FL-----PLYVTTCNN-----TKLPTLEFRSPNKVYTLEPEY-YLQPIEDIGS 406 (453)
T ss_pred CCchhcCCHHHHHHHHHHhCCeec-C-CC-----CeEEEeCCC-----CCCCeEEEEECCEEEEECHHH-heeccccCCC
Confidence 999999999999999888854211 0 00 223447875 258999999999999999999 986532 23
Q ss_pred eEEE-EEecC--CCCceeechhhccceEEEEECCCCEEEEEcCC
Q 036636 295 FFLL-AVAPH--DDLVALIGSQQQRDTRFVYDLNIDLLSFVKEN 335 (341)
Q Consensus 295 ~~C~-~~~~~--~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 335 (341)
..|+ ++++. ..+.||||++|||++|+|||.+++|||||+++
T Consensus 407 ~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 407 ALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred cEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 5797 57662 34589999999999999999999999999986
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.1e-50 Score=383.75 Aligned_cols=280 Identities=19% Similarity=0.306 Sum_probs=215.1
Q ss_pred eEEeecCCCCeEEEEEEcCCCeeEEE--------------ecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCce
Q 036636 2 VRLFIGTPSKGVLLILDTGSALIYAI--------------FDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSV 67 (341)
Q Consensus 2 ~~i~iGtP~q~~~v~~DTGSs~lwv~--------------y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~ 67 (341)
.+|.||||||+++|+|||||+++||+ |||++|+|+ ...++.+.+.|++| +
T Consensus 141 ~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~---------------~~~~~~~~i~YG~G-s 204 (450)
T PTZ00013 141 GEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSY---------------EKDGTKVDITYGSG-T 204 (450)
T ss_pred EEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCccc---------------ccCCcEEEEEECCc-e
Confidence 58999999999999999999999993 333333333 33468999999999 6
Q ss_pred eEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCc------hHHhhhcc--c-CCceE
Q 036636 68 TKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS------FISQLGSI--I-KKRFS 138 (341)
Q Consensus 68 ~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~~--~-~~~Fs 138 (341)
+.|.+++|+|++ |+. +++ ..|+++...............|||||||++.++ ++.+|.++ + +++||
T Consensus 205 v~G~~~~Dtv~i----G~~-~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS 278 (450)
T PTZ00013 205 VKGFFSKDLVTL----GHL-SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFT 278 (450)
T ss_pred EEEEEEEEEEEE----CCE-EEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEE
Confidence 999999999999 877 776 578887765421000112468999999987653 56677766 4 57999
Q ss_pred EecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccc
Q 036636 139 YCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSG 217 (341)
Q Consensus 139 ~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTG 217 (341)
+||++.. .. .|.|+|||+| .++.+++.|+|+... .+|.|.++ +.++.... .+..+|||||
T Consensus 279 ~~L~~~~-~~---~G~L~fGGiD~~~y~G~L~y~pv~~~--~yW~I~l~-v~~G~~~~------------~~~~aIlDSG 339 (450)
T PTZ00013 279 FYLPVHD-VH---AGYLTIGGIEEKFYEGNITYEKLNHD--LYWQIDLD-VHFGKQTM------------QKANVIVDSG 339 (450)
T ss_pred EEecCCC-CC---CCEEEECCcCccccccceEEEEcCcC--ceEEEEEE-EEECceec------------cccceEECCC
Confidence 9998642 23 7999999998 567899999999764 89999998 66654322 1456999999
Q ss_pred cceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEc--CCCe
Q 036636 218 SVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDY--ENHF 295 (341)
Q Consensus 218 tt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~--~~~~ 295 (341)
|+++++|+++++++.+.+..... .. ...+..+|+. ..+|+|+|.|+|..++|+|++ |+... .++.
T Consensus 340 TSli~lP~~~~~~i~~~l~~~~~----~~---~~~y~~~C~~-----~~lP~i~F~~~g~~~~L~p~~-Yi~~~~~~~~~ 406 (450)
T PTZ00013 340 TTTITAPSEFLNKFFANLNVIKV----PF---LPFYVTTCDN-----KEMPTLEFKSANNTYTLEPEY-YMNPLLDVDDT 406 (450)
T ss_pred CccccCCHHHHHHHHHHhCCeec----CC---CCeEEeecCC-----CCCCeEEEEECCEEEEECHHH-heehhccCCCC
Confidence 99999999999988887743211 10 0223446764 258999999999999999999 98643 2345
Q ss_pred EEE-EEec--CCCCceeechhhccceEEEEECCCCEEEEEcCC
Q 036636 296 FLL-AVAP--HDDLVALIGSQQQRDTRFVYDLNIDLLSFVKEN 335 (341)
Q Consensus 296 ~C~-~~~~--~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 335 (341)
.|+ ++.+ ...+.||||++|||++|+|||.+++|||||+++
T Consensus 407 ~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 407 LCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred eeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 897 6665 234689999999999999999999999999875
No 20
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=8e-50 Score=364.02 Aligned_cols=268 Identities=22% Similarity=0.298 Sum_probs=222.0
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEEEEEEEEEEEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVI 80 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G~~~~D~v~i~ 80 (341)
+++|.||||+|+++|+|||||+++||. .|++.|++|+++.|.+++|+|++
T Consensus 4 ~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~~- 53 (295)
T cd05474 4 SAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVSI- 53 (295)
T ss_pred EEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEEE-
Confidence 479999999999999999999999993 46888999889999999999999
Q ss_pred ecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCC-----------chHHhhhcc--c-CCceEEecCCCCC
Q 036636 81 GKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTI-----------SFISQLGSI--I-KKRFSYCLVIPLP 146 (341)
Q Consensus 81 ~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~~~--~-~~~Fs~~l~~~~~ 146 (341)
++. .++++.|||++... ..+||||||+... +++.||.++ + +++||+||.+..
T Consensus 54 ---g~~-~~~~~~fg~~~~~~---------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~- 119 (295)
T cd05474 54 ---GGA-TVKNLQFAVANSTS---------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD- 119 (295)
T ss_pred ---CCe-EecceEEEEEecCC---------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC-
Confidence 777 89999999998843 3689999998775 688899876 4 589999998752
Q ss_pred CCCCcceeEEEcCCC-CCCCCCceeeeeecCC----CCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEcccccee
Q 036636 147 NGEYTSSYLKFGTDM-GYRRPSTQATKFINHP----NNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLT 221 (341)
Q Consensus 147 ~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~----~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~ 221 (341)
.. .|.|+|||+| .++.+++.|+|+..++ ..+|.|.+++|+++++++..+.. .....++|||||+++
T Consensus 120 ~~---~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~------~~~~~~iiDSGt~~~ 190 (295)
T cd05474 120 AS---TGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL------SKNLPALLDSGTTLT 190 (295)
T ss_pred CC---ceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc------CCCccEEECCCCccE
Confidence 23 7999999988 4577899999999863 27999999999999987643211 136789999999999
Q ss_pred eechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcC----CCeEE
Q 036636 222 YFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYE----NHFFL 297 (341)
Q Consensus 222 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~----~~~~C 297 (341)
+||++++++|.+++.+..... . ..+...|+... . |+|+|+|+|.+++||+++ |+.... .+..|
T Consensus 191 ~lP~~~~~~l~~~~~~~~~~~--~-----~~~~~~C~~~~----~-p~i~f~f~g~~~~i~~~~-~~~~~~~~~~~~~~C 257 (295)
T cd05474 191 YLPSDIVDAIAKQLGATYDSD--E-----GLYVVDCDAKD----D-GSLTFNFGGATISVPLSD-LVLPASTDDGGDGAC 257 (295)
T ss_pred eCCHHHHHHHHHHhCCEEcCC--C-----cEEEEeCCCCC----C-CEEEEEECCeEEEEEHHH-hEeccccCCCCCCCe
Confidence 999999999999986654311 1 22445787643 3 999999999999999999 887653 24567
Q ss_pred -EEEecCCCCceeechhhccceEEEEECCCCEEEEEcC
Q 036636 298 -LAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKE 334 (341)
Q Consensus 298 -~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 334 (341)
+++.+.+...||||++|||++|++||.+++|||||+|
T Consensus 258 ~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 258 YLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 4777744468999999999999999999999999986
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.5e-48 Score=352.45 Aligned_cols=252 Identities=20% Similarity=0.266 Sum_probs=199.0
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEE--------------ecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCc
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAI--------------FDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQS 66 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~--------------y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~ 66 (341)
+++|.||||||++.|+|||||+++||. |+|++|+|++.. ++|.+.+.|++|+
T Consensus 2 ~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~--------------~~~~~~i~Y~~G~ 67 (278)
T cd06097 2 LTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLL--------------PGATWSISYGDGS 67 (278)
T ss_pred eeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceec--------------CCcEEEEEeCCCC
Confidence 478999999999999999999999993 555555554432 2589999999997
Q ss_pred eeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCc---------hHHhhhcc-cCCc
Q 036636 67 VTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTIS---------FISQLGSI-IKKR 136 (341)
Q Consensus 67 ~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s---------~~~ql~~~-~~~~ 136 (341)
.+.|.+++|+|+| ++. .++++.||+++...+.. ......+||||||+..++ +..+|..+ .+++
T Consensus 68 ~~~G~~~~D~v~i----g~~-~~~~~~fg~~~~~~~~~--~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~ 140 (278)
T cd06097 68 SASGIVYTDTVSI----GGV-EVPNQAIELATAVSASF--FSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPL 140 (278)
T ss_pred eEEEEEEEEEEEE----CCE-EECCeEEEEEeecCccc--cccccccceeeeccccccccccCCCCCHHHHHHHhccCce
Confidence 7999999999999 877 89999999999876421 123579999999987653 34445544 3589
Q ss_pred eEEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEc
Q 036636 137 FSYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIID 215 (341)
Q Consensus 137 Fs~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiD 215 (341)
||+||.+. . .|+|+|||+| .++.+++.|+|+..+ ..+|.|.+++|+++++..... .+..++||
T Consensus 141 Fs~~l~~~---~---~G~l~fGg~D~~~~~g~l~~~pi~~~-~~~w~v~l~~i~v~~~~~~~~---------~~~~~iiD 204 (278)
T cd06097 141 FTADLRKA---A---PGFYTFGYIDESKYKGEISWTPVDNS-SGFWQFTSTSYTVGGDAPWSR---------SGFSAIAD 204 (278)
T ss_pred EEEEecCC---C---CcEEEEeccChHHcCCceEEEEccCC-CcEEEEEEeeEEECCcceeec---------CCceEEee
Confidence 99999862 3 7999999998 457899999999874 589999999999998743221 25679999
Q ss_pred cccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcCCCe
Q 036636 216 SGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHF 295 (341)
Q Consensus 216 TGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~~~~ 295 (341)
|||+++++|++++++|.+++..... .... ..+..+|.. .+|+|+|+|
T Consensus 205 SGTs~~~lP~~~~~~l~~~l~g~~~--~~~~----~~~~~~C~~------~~P~i~f~~--------------------- 251 (278)
T cd06097 205 TGTTLILLPDAIVEAYYSQVPGAYY--DSEY----GGWVFPCDT------TLPDLSFAV--------------------- 251 (278)
T ss_pred cCCchhcCCHHHHHHHHHhCcCCcc--cCCC----CEEEEECCC------CCCCEEEEE---------------------
Confidence 9999999999999999888732111 0000 112235543 289999998
Q ss_pred EEEEEecCCCCceeechhhccceEEEEECCCCEEEEEc
Q 036636 296 FLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVK 333 (341)
Q Consensus 296 ~C~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 333 (341)
.||||++|||++|+|||.+|+|||||+
T Consensus 252 -----------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -----------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -----------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999995
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.5e-46 Score=345.75 Aligned_cols=282 Identities=22% Similarity=0.369 Sum_probs=223.8
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE---------------EecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCC
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA---------------IFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQ 65 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv---------------~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G 65 (341)
.++|.||||+|+++|++||||+++|| .|++.+|+|++. .++.+.+.|++|
T Consensus 3 ~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~---------------~~~~~~~~y~~g 67 (317)
T PF00026_consen 3 YINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSN---------------QGKPFSISYGDG 67 (317)
T ss_dssp EEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEE---------------EEEEEEEEETTE
T ss_pred EEEEEECCCCeEEEEEEecccceeeeceecccccccccccccccccccccccc---------------ceeeeeeeccCc
Confidence 37899999999999999999999999 334444444433 247899999999
Q ss_pred ceeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCC-------CchHHhhhcc--c-CC
Q 036636 66 SVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVT-------ISFISQLGSI--I-KK 135 (341)
Q Consensus 66 ~~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~-------~s~~~ql~~~--~-~~ 135 (341)
+ +.|.++.|+|+| ++. .+.++.||++....+.. ......+||||||++. .+++.+|.++ + ++
T Consensus 68 ~-~~G~~~~D~v~i----g~~-~~~~~~f~~~~~~~~~~--~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~ 139 (317)
T PF00026_consen 68 S-VSGNLVSDTVSI----GGL-TIPNQTFGLADSYSGDP--FSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSN 139 (317)
T ss_dssp E-EEEEEEEEEEEE----TTE-EEEEEEEEEEEEEESHH--HHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSS
T ss_pred c-cccccccceEee----eec-cccccceeccccccccc--cccccccccccccCCcccccccCCcceecchhhcccccc
Confidence 5 999999999999 887 89899999999964411 1246789999999643 4677888877 4 68
Q ss_pred ceEEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEE
Q 036636 136 RFSYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCII 214 (341)
Q Consensus 136 ~Fs~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 214 (341)
+||++|.+.. .. .|.|+|||+| .++.+++.|+|+.. ..+|.+.+++|++++...... ....++|
T Consensus 140 ~fsl~l~~~~-~~---~g~l~~Gg~d~~~~~g~~~~~~~~~--~~~w~v~~~~i~i~~~~~~~~---------~~~~~~~ 204 (317)
T PF00026_consen 140 VFSLYLNPSD-SQ---NGSLTFGGYDPSKYDGDLVWVPLVS--SGYWSVPLDSISIGGESVFSS---------SGQQAIL 204 (317)
T ss_dssp EEEEEEESTT-SS---EEEEEESSEEGGGEESEEEEEEBSS--TTTTEEEEEEEEETTEEEEEE---------EEEEEEE
T ss_pred ccceeeeecc-cc---cchheeeccccccccCceeccCccc--ccccccccccccccccccccc---------cceeeec
Confidence 9999999874 22 7999999988 45779999999996 499999999999998832221 1346999
Q ss_pred ccccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcCC-
Q 036636 215 DSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYEN- 293 (341)
Q Consensus 215 DTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~~- 293 (341)
|||+++++||.+++++|++.+...... ..+..+|... ..+|.++|+|++.+++|+|++ |+.....
T Consensus 205 Dtgt~~i~lp~~~~~~i~~~l~~~~~~---------~~~~~~c~~~----~~~p~l~f~~~~~~~~i~~~~-~~~~~~~~ 270 (317)
T PF00026_consen 205 DTGTSYIYLPRSIFDAIIKALGGSYSD---------GVYSVPCNST----DSLPDLTFTFGGVTFTIPPSD-YIFKIEDG 270 (317)
T ss_dssp ETTBSSEEEEHHHHHHHHHHHTTEEEC---------SEEEEETTGG----GGSEEEEEEETTEEEEEEHHH-HEEEESST
T ss_pred ccccccccccchhhHHHHhhhcccccc---------eeEEEecccc----cccceEEEeeCCEEEEecchH-hccccccc
Confidence 999999999999999999999655431 1122355433 368999999999999999999 8877643
Q ss_pred -CeEEE-EEec----CCCCceeechhhccceEEEEECCCCEEEEEcC
Q 036636 294 -HFFLL-AVAP----HDDLVALIGSQQQRDTRFVYDLNIDLLSFVKE 334 (341)
Q Consensus 294 -~~~C~-~~~~----~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 334 (341)
...|. .+.. .....++||.+|||++|++||.+++|||||+|
T Consensus 271 ~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 271 NGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 23786 5554 35778999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.6e-43 Score=317.96 Aligned_cols=267 Identities=25% Similarity=0.377 Sum_probs=208.7
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCC---CCCCCCCceeEEecCCCceeEEEEEEEEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTY---FKCVNEQCVYTMKYADQSVTKGFAAHETI 77 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~---~~c~~~~~~~~~~Y~~G~~~~G~~~~D~v 77 (341)
+++|.||||+|++.|+|||||+++||......+...+. +....|.. ..|.+..|.+.+.|++| ++.|.+++|+|
T Consensus 2 ~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~Y~~g-~~~g~~~~D~v 78 (283)
T cd05471 2 YGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQK--HPRFKYDSSKSSTYKDTGCTFSITYGDG-SVTGGLGTDTV 78 (283)
T ss_pred EEEEEECCCCcEEEEEEeCCCCCEEEecCCCCcccccc--CCCCccCccCCceeecCCCEEEEEECCC-eEEEEEEEeEE
Confidence 47899999999999999999999999544322211000 00000111 34455679999999998 89999999999
Q ss_pred EEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCC------CchHHhhhcc---cCCceEEecCCCC-CC
Q 036636 78 SVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVT------ISFISQLGSI---IKKRFSYCLVIPL-PN 147 (341)
Q Consensus 78 ~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~---~~~~Fs~~l~~~~-~~ 147 (341)
++ ++. .++++.|||++..... ......+||||||+.. .+++.||.++ .+++||+||.+.. ..
T Consensus 79 ~~----~~~-~~~~~~fg~~~~~~~~---~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~ 150 (283)
T cd05471 79 TI----GGL-TIPNQTFGCATSESGD---FSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGG 150 (283)
T ss_pred EE----CCE-EEeceEEEEEeccCCc---ccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCC
Confidence 99 777 7899999999998752 2356899999999987 7899999987 3699999999852 12
Q ss_pred CCCcceeEEEcCCCC-CCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccceeeechH
Q 036636 148 GEYTSSYLKFGTDMG-YRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSD 226 (341)
Q Consensus 148 ~~~~~G~l~fGg~d~-~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~ 226 (341)
. .|.|+|||+|. ++.+++.|+|++.....+|.|.+++|++++...... .....++|||||++++||++
T Consensus 151 ~---~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~--------~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 151 N---GGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISS--------SGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred C---CCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeec--------CCCcEEEEecCCCCEeCCHH
Confidence 3 89999999984 467999999999843489999999999998741111 12668999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCceeecC-CCCCCCCeEEEEEcCcEEEeeCCCcEEEEcCCCeEEEEEecCCC
Q 036636 227 VYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLP-ETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDD 305 (341)
Q Consensus 227 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~-~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~~~~~C~~~~~~~~ 305 (341)
++++|.+++.+.... ...|+... .....+|+|+|+|
T Consensus 220 ~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~p~i~f~f------------------------------- 256 (283)
T cd05471 220 VYDAILKALGAAVSS------------SDGGYGVDCSPCDTLPDITFTF------------------------------- 256 (283)
T ss_pred HHHHHHHHhCCcccc------------cCCcEEEeCcccCcCCCEEEEE-------------------------------
Confidence 999999999766531 11222222 2335799999999
Q ss_pred CceeechhhccceEEEEECCCCEEEEEc
Q 036636 306 LVALIGSQQQRDTRFVYDLNIDLLSFVK 333 (341)
Q Consensus 306 ~~~ilG~~fl~~~yvvfD~~~~riGfa~ 333 (341)
.+|||++|||++|++||.+++|||||+
T Consensus 257 -~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 789999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.5e-30 Score=215.86 Aligned_cols=151 Identities=38% Similarity=0.696 Sum_probs=123.4
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE-----EecCCCCCCceeecCCCCCCCC-------CCCCCCCceeEEecCCCcee
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA-----IFDPRKSSSFQKINCDHPDCTY-------FKCVNEQCVYTMKYADQSVT 68 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv-----~y~p~~Sst~~~~~c~~~~C~~-------~~c~~~~~~~~~~Y~~G~~~ 68 (341)
+++|.||||+|++.|++||||+++|+ .|+|.+|+||+.+.|.+..|.. ..|.+..|.|.+.|++|+.+
T Consensus 2 ~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~~~s~~ 81 (164)
T PF14543_consen 2 YVSVSIGTPPQPFSLVVDTGSDLTWVQCPDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYGDGSSS 81 (164)
T ss_dssp EEEEECTCTTEEEEEEEETT-SSEEEET----STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEETTTEEE
T ss_pred EEEEEeCCCCceEEEEEECCCCceEEcCCCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccceeecCCCccc
Confidence 47899999999999999999999999 5799999999999999998874 12233459999999999999
Q ss_pred EEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCchHHhhhcccCCceEEecCCCCCCC
Q 036636 69 KGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNG 148 (341)
Q Consensus 69 ~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs~~l~~~~~~~ 148 (341)
.|.+++|+|++...+++...+.++.|||++...+ .....+||||||+.++||+.||.++..++||+||.+.....
T Consensus 82 ~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g-----~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~~~~~~ 156 (164)
T PF14543_consen 82 SGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG-----LFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPSSSPSS 156 (164)
T ss_dssp EEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT-----SSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S-SSSS
T ss_pred cCceEEEEEEecCCCCCCceeeeEEEEeeecccc-----CCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCCCCCCC
Confidence 9999999999987766545888999999999887 34589999999999999999998776789999999932233
Q ss_pred CCcceeEEEcC
Q 036636 149 EYTSSYLKFGT 159 (341)
Q Consensus 149 ~~~~G~l~fGg 159 (341)
.|.|+||+
T Consensus 157 ---~g~l~fG~ 164 (164)
T PF14543_consen 157 ---SGFLSFGD 164 (164)
T ss_dssp ---EEEEEECS
T ss_pred ---CEEEEeCc
Confidence 89999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=6.7e-27 Score=193.81 Aligned_cols=149 Identities=34% Similarity=0.639 Sum_probs=120.9
Q ss_pred eeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccceeeechHHHHHHHHHHHHHhhhccc---ccCCCCCCCCCc
Q 036636 180 FYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQL---AQLSDCPEPIQL 256 (341)
Q Consensus 180 ~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~~~~ 256 (341)
+|.|+|++|+|+++++.++...|+. ..+...++|||||++++||+++|++|.+++.+++..... .. . ...++.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~-~--~~~~~~ 76 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAP-P--FSGFDL 76 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE------TT-S-
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccc-c--CCCCCc
Confidence 5999999999999999999988877 667889999999999999999999999999999875431 11 1 456789
Q ss_pred eeecCC-----CCCCCCeEEEEEc-CcEEEeeCCCcEEEEcCCCeEEEEEecC---CCCceeechhhccceEEEEECCCC
Q 036636 257 CYFLPE-----TFNRFPSMAFYFE-DANLRIDGENVFIIDYENHFFLLAVAPH---DDLVALIGSQQQRDTRFVYDLNID 327 (341)
Q Consensus 257 C~~~~~-----~~~~~P~i~f~f~-g~~~~i~~~~~y~~~~~~~~~C~~~~~~---~~~~~ilG~~fl~~~yvvfD~~~~ 327 (341)
||+.+. ....+|+|+|+|. |+.+++++++ |+...+++..|+++.+. ..+..|||..+|++++++||++++
T Consensus 77 Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~-y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~ 155 (161)
T PF14541_consen 77 CYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPEN-YFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENG 155 (161)
T ss_dssp EEEGGCS-EETTEESS--EEEEETTSEEEEE-HHH-HEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTT
T ss_pred eeeccccccccccccCCeEEEEEeCCcceeeeccc-eeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCC
Confidence 999873 4568999999999 6899999999 88888778999999875 678999999999999999999999
Q ss_pred EEEEEc
Q 036636 328 LLSFVK 333 (341)
Q Consensus 328 riGfa~ 333 (341)
||||++
T Consensus 156 ~igF~~ 161 (161)
T PF14541_consen 156 RIGFAP 161 (161)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.85 E-value=5.5e-21 Score=147.93 Aligned_cols=94 Identities=30% Similarity=0.574 Sum_probs=76.0
Q ss_pred eEEeecCCCCeEEEEEEcCCCeeEEEe---------------cCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCc
Q 036636 2 VRLFIGTPSKGVLLILDTGSALIYAIF---------------DPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQS 66 (341)
Q Consensus 2 ~~i~iGtP~q~~~v~~DTGSs~lwv~y---------------~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~ 66 (341)
++|.||||||++.|+|||||+++||.. +|..|+++ ....|.|.+.|++|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~---------------~~~~~~~~~~Y~~g- 64 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTY---------------SDNGCTFSITYGTG- 64 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCC---------------CCCCcEEEEEeCCC-
Confidence 589999999999999999999999932 33333332 23459999999999
Q ss_pred eeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeec
Q 036636 67 VTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGL 118 (341)
Q Consensus 67 ~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGL 118 (341)
++.|.+++|+|+| ++. .++++.|||++...+.. ......+|||||
T Consensus 65 ~~~g~~~~D~v~i----g~~-~~~~~~fg~~~~~~~~~--~~~~~~~GilGL 109 (109)
T cd05470 65 SLSGGLSTDTVSI----GDI-EVVGQAFGCATDEPGAT--FLPALFDGILGL 109 (109)
T ss_pred eEEEEEEEEEEEE----CCE-EECCEEEEEEEecCCcc--ccccccccccCC
Confidence 7889999999999 777 89999999999987621 123578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.03 E-value=2.9e-05 Score=57.79 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=62.2
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEEEEEEEEEEEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVI 80 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G~~~~D~v~i~ 80 (341)
++++.|+ .+++++++||||+.+|+... ..+.+... ........+..++|.........+.+++
T Consensus 4 ~v~v~i~--~~~~~~llDTGa~~s~i~~~-----~~~~l~~~---------~~~~~~~~~~~~~G~~~~~~~~~~~i~i- 66 (96)
T cd05483 4 VVPVTIN--GQPVRFLLDTGASTTVISEE-----LAERLGLP---------LTLGGKVTVQTANGRVRAARVRLDSLQI- 66 (96)
T ss_pred EEEEEEC--CEEEEEEEECCCCcEEcCHH-----HHHHcCCC---------ccCCCcEEEEecCCCccceEEEcceEEE-
Confidence 3678888 69999999999999999211 11111100 0112456777788866666777889999
Q ss_pred ecCCCceeecceEEecccCCCCCcccccCCCcceeeecCC
Q 036636 81 GKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSR 120 (341)
Q Consensus 81 ~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~ 120 (341)
|+. .++++.+........ ..+||||+.+
T Consensus 67 ---g~~-~~~~~~~~v~d~~~~--------~~~gIlG~d~ 94 (96)
T cd05483 67 ---GGI-TLRNVPAVVLPGDAL--------GVDGLLGMDF 94 (96)
T ss_pred ---CCc-EEeccEEEEeCCccc--------CCceEeChHH
Confidence 887 888888877655331 4799999863
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.87 E-value=0.021 Score=41.55 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=53.4
Q ss_pred eEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEEEEEEEEEEEEe
Q 036636 2 VRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIG 81 (341)
Q Consensus 2 ~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G~~~~D~v~i~~ 81 (341)
|++.|+ .+++++++|||++.+.+..+ ..+.+..... .......+.-.+|.........+.+.+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~-----~~~~l~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~i~i-- 63 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS-----LAKKLGLKPR--------PKSVPISVSGAGGSVTVYRGRVDSITI-- 63 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH-----HHHHcCCCCc--------CCceeEEEEeCCCCEEEEEEEEEEEEE--
Confidence 467777 57999999999998877110 0111111000 001234444456655555566678899
Q ss_pred cCCCceeecceEEecccCCCCCcccccCCCcceeeecC
Q 036636 82 KGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLS 119 (341)
Q Consensus 82 ~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg 119 (341)
|+. .++++.|-.... ....+||||+-
T Consensus 64 --g~~-~~~~~~~~v~~~---------~~~~~~iLG~d 89 (90)
T PF13650_consen 64 --GGI-TLKNVPFLVVDL---------GDPIDGILGMD 89 (90)
T ss_pred --CCE-EEEeEEEEEECC---------CCCCEEEeCCc
Confidence 776 777777766652 12568999974
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.06 E-value=0.052 Score=42.40 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=54.7
Q ss_pred eEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEEEEEEEEEEEEe
Q 036636 2 VRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIG 81 (341)
Q Consensus 2 ~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G~~~~D~v~i~~ 81 (341)
+++.|. .+++.+++|||++.+-+..+ ..+.+.... ........+.=+.|........-|.+.+
T Consensus 14 v~~~In--G~~~~flVDTGAs~t~is~~-----~A~~Lgl~~--------~~~~~~~~~~ta~G~~~~~~~~l~~l~i-- 76 (121)
T TIGR02281 14 ATGRVN--GRNVRFLVDTGATSVALNEE-----DAQRLGLDL--------NRLGYTVTVSTANGQIKAARVTLDRVAI-- 76 (121)
T ss_pred EEEEEC--CEEEEEEEECCCCcEEcCHH-----HHHHcCCCc--------ccCCceEEEEeCCCcEEEEEEEeCEEEE--
Confidence 455664 57999999999999877111 000111000 0011234455566755455568889999
Q ss_pred cCCCceeecceEEecccCCCCCcccccCCCcceeeecCC
Q 036636 82 KGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSR 120 (341)
Q Consensus 82 ~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~ 120 (341)
|+. .++|+.+.++..... .+|+||+.+
T Consensus 77 --G~~-~~~nv~~~v~~~~~~---------~~~LLGm~f 103 (121)
T TIGR02281 77 --GGI-VVNDVDAMVAEGGAL---------SESLLGMSF 103 (121)
T ss_pred --CCE-EEeCcEEEEeCCCcC---------CceEcCHHH
Confidence 887 888888877643221 379999863
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.76 E-value=0.13 Score=40.27 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCceeechhhccceEEEEECCCCEEEE
Q 036636 305 DLVALIGSQQQRDTRFVYDLNIDLLSF 331 (341)
Q Consensus 305 ~~~~ilG~~fl~~~yvvfD~~~~riGf 331 (341)
....|||..||+.+-.+.|..+++|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 446899999999999999999998753
No 31
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=95.41 E-value=0.05 Score=43.34 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=26.2
Q ss_pred CceeechhhccceEEEEECCCCEEEEEcC
Q 036636 306 LVALIGSQQQRDTRFVYDLNIDLLSFVKE 334 (341)
Q Consensus 306 ~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 334 (341)
-..|||..+|+.+..+-|..+++|-|...
T Consensus 104 ~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 104 YDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 36899999999999999999999999753
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.38 E-value=1.1 Score=34.93 Aligned_cols=36 Identities=11% Similarity=0.350 Sum_probs=26.5
Q ss_pred CCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccceeeechHHHHHH
Q 036636 178 NNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 178 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l 231 (341)
.++|.+. ++++|+.. .+++|||++.+.+++++.+++
T Consensus 9 ~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 4566543 55677743 389999999999999977654
No 33
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=94.30 E-value=0.17 Score=38.47 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.0
Q ss_pred CceeechhhccceEEEEECCCCEE
Q 036636 306 LVALIGSQQQRDTRFVYDLNIDLL 329 (341)
Q Consensus 306 ~~~ilG~~fl~~~yvvfD~~~~ri 329 (341)
+..+||..||+.+-.+.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999987753
No 34
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.06 E-value=0.86 Score=35.61 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=48.8
Q ss_pred eEEeecCCCCeEEEEEEcCCCeeEEEecCCCCCCceeecCCCCCCCCCCCCCCCceeE-EecC-CCceeEEEEEEEEEEE
Q 036636 2 VRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYT-MKYA-DQSVTKGFAAHETISV 79 (341)
Q Consensus 2 ~~i~iGtP~q~~~v~~DTGSs~lwv~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~-~~Y~-~G~~~~G~~~~D~v~i 79 (341)
+++.|+ .+++++++|||++..++..+ ..+.+.+... ....+. ...+ .+....|....+.+.+
T Consensus 19 v~~~In--g~~~~~LvDTGAs~s~Is~~-----~a~~lgl~~~---------~~~~~~~~~~g~g~~~~~g~~~~~~l~i 82 (124)
T cd05479 19 INVEIN--GVPVKAFVDSGAQMTIMSKA-----CAEKCGLMRL---------IDKRFQGIAKGVGTQKILGRIHLAQVKI 82 (124)
T ss_pred EEEEEC--CEEEEEEEeCCCceEEeCHH-----HHHHcCCccc---------cCcceEEEEecCCCcEEEeEEEEEEEEE
Confidence 466776 57899999999999988110 1111111000 011222 2333 2335566666778888
Q ss_pred EecCCCceeecceEEecccCCCCCcccccCCCcceeeecCC
Q 036636 80 IGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSR 120 (341)
Q Consensus 80 ~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~ 120 (341)
++. .++ ..|.+... ...|+|||+.+
T Consensus 83 ----~~~-~~~-~~~~Vl~~----------~~~d~ILG~d~ 107 (124)
T cd05479 83 ----GNL-FLP-CSFTVLED----------DDVDFLIGLDM 107 (124)
T ss_pred ----CCE-Eee-eEEEEECC----------CCcCEEecHHH
Confidence 776 443 55554422 25689999853
No 35
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=92.17 E-value=5 Score=37.20 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=31.1
Q ss_pred EecCCCceeEEEEEEEEEEEEecCCCceeecceEEecc----------cCCCCCcccccCCCcceeeecCCC
Q 036636 60 MKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCS----------NDNHGFDEDARDGALAGVLGLSRV 121 (341)
Q Consensus 60 ~~Y~~G~~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~----------~~~~~~~~~~~~~~~~GIlGLg~~ 121 (341)
..|++| ..=|-+.+-.|+|+++... .++=+.++-. ..... ..........||||+|.-
T Consensus 82 ~~F~sg-ytWGsVr~AdV~igge~A~--~iPiQvI~D~~~~~~P~sC~~~g~~-~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 AQFASG-YTWGSVRTADVTIGGETAS--SIPIQVIGDSAAPSVPSSCSNSGAS-MNTVADLGANGILGIGPF 149 (370)
T ss_pred hhccCc-ccccceEEEEEEEcCeecc--ccCEEEEcCCCCCCCCchhhcCCCC-CCCcccccCceEEeecCC
Confidence 457777 6667788888999432111 2333333321 11110 001234678999999863
No 36
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=90.37 E-value=1 Score=36.59 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=18.1
Q ss_pred CceEEccccceeeechHHHHHH
Q 036636 210 GGCIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 210 ~~~iiDTGtt~~~lp~~~~~~l 231 (341)
..++||||+...+..+++.+.|
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEeCCCccceeehhhHHhh
Confidence 3599999999999888877655
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.00 E-value=0.47 Score=34.73 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=20.8
Q ss_pred CeEEeecCCCCeEEEEEEcCCCeeEE
Q 036636 1 MVRLFIGTPSKGVLLILDTGSALIYA 26 (341)
Q Consensus 1 ~~~i~iGtP~q~~~v~~DTGSs~lwv 26 (341)
++++.|+ .+++.+++||||+..++
T Consensus 2 ~~~~~In--g~~i~~lvDTGA~~svi 25 (91)
T cd05484 2 TVTLLVN--GKPLKFQLDTGSAITVI 25 (91)
T ss_pred EEEEEEC--CEEEEEEEcCCcceEEe
Confidence 3667787 58999999999999999
No 38
>PF13650 Asp_protease_2: Aspartyl protease
Probab=88.52 E-value=0.71 Score=33.23 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.3
Q ss_pred ceEEccccceeeechHHHHHH
Q 036636 211 GCIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~~~~~l 231 (341)
.++||||++.+.+++++++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 399999999999999887665
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=86.45 E-value=5.6 Score=28.67 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=17.5
Q ss_pred EeecCCCCeEEEEEEcCCCeeEE
Q 036636 4 LFIGTPSKGVLLILDTGSALIYA 26 (341)
Q Consensus 4 i~iGtP~q~~~v~~DTGSs~lwv 26 (341)
+.|. .+++.+++|||++.+-+
T Consensus 3 v~In--G~~~~fLvDTGA~~tii 23 (86)
T cd06095 3 ITVE--GVPIVFLVDTGATHSVL 23 (86)
T ss_pred EEEC--CEEEEEEEECCCCeEEE
Confidence 4444 58899999999999988
No 40
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=84.56 E-value=1.8 Score=31.63 Aligned_cols=30 Identities=20% Similarity=0.456 Sum_probs=24.4
Q ss_pred eEEEcCeeeecCCCCccccccCCCceEEccccceeeechHHHHHH
Q 036636 187 DISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 187 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l 231 (341)
.+.|+|+.+. +.+|||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 3667777653 88999999999999988755
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.16 E-value=1.9 Score=30.10 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=18.2
Q ss_pred eEEccccceeeechHHHHHH
Q 036636 212 CIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 212 ~iiDTGtt~~~lp~~~~~~l 231 (341)
+++|||++-.+++.++.+.+
T Consensus 22 alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 22 ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEeCCCcceecCHHHHHHh
Confidence 89999999999999988765
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=82.15 E-value=2.5 Score=30.62 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=17.8
Q ss_pred ceEEccccceeeechHHHHHH
Q 036636 211 GCIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~~~~~l 231 (341)
.++||||++.+.++.+...++
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 489999999999999876654
No 43
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=81.44 E-value=2.3 Score=36.01 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=33.3
Q ss_pred CCeEEEEEcCcEEEeeCCCcEEEEcCCCeEEEEEecCCCCceeechhhccceEEEEECCCCEEEEEc
Q 036636 267 FPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVK 333 (341)
Q Consensus 267 ~P~i~f~f~g~~~~i~~~~~y~~~~~~~~~C~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 333 (341)
.+.+.+.+++..|.+|- ++.. ..+-..|||.+|+|.|+-..+.+ .+|-|-.
T Consensus 67 ~~~~~i~I~~~~F~IP~----iYq~-----------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 67 AKNGKIQIADKIFRIPT----IYQQ-----------ESGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred ecCceEEEccEEEeccE----EEEe-----------cCCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 45666666666655553 2211 23457999999999998777775 4777754
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=80.16 E-value=2.6 Score=30.44 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.3
Q ss_pred ceEEccccceeeechHHHHHH
Q 036636 211 GCIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~~~~~l 231 (341)
.+++|||.+.+.++++..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 389999999999999988764
No 45
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=78.22 E-value=6.4 Score=33.40 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCCCeEEEEEEcCCCeeEE--------EecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEEEEEEEEEEE
Q 036636 8 TPSKGVLLILDTGSALIYA--------IFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISV 79 (341)
Q Consensus 8 tP~q~~~v~~DTGSs~lwv--------~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G~~~~D~v~i 79 (341)
-..|++..++|||-+..-+ -+|.+. .+.++.+.-+.|..-....--|.|.|
T Consensus 112 VNGk~v~fLVDTGATsVal~~~dA~RlGid~~~---------------------l~y~~~v~TANG~~~AA~V~Ld~v~I 170 (215)
T COG3577 112 VNGKKVDFLVDTGATSVALNEEDARRLGIDLNS---------------------LDYTITVSTANGRARAAPVTLDRVQI 170 (215)
T ss_pred ECCEEEEEEEecCcceeecCHHHHHHhCCCccc---------------------cCCceEEEccCCccccceEEeeeEEE
Confidence 3479999999999998887 333331 13677888899966677789999999
Q ss_pred EecCCCceeecceEE
Q 036636 80 IGKGEGKAIFHGALF 94 (341)
Q Consensus 80 ~~~~g~~~~~~~~~f 94 (341)
|+. .++|+.-
T Consensus 171 ----G~I-~~~nV~A 180 (215)
T COG3577 171 ----GGI-RVKNVDA 180 (215)
T ss_pred ----ccE-EEcCchh
Confidence 776 7776543
No 46
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=77.51 E-value=3.2 Score=30.70 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.2
Q ss_pred eEEeecCCCCeEEEEEEcCCCeeEE
Q 036636 2 VRLFIGTPSKGVLLILDTGSALIYA 26 (341)
Q Consensus 2 ~~i~iGtP~q~~~v~~DTGSs~lwv 26 (341)
++|.|. .+++.+++||||+.+-+
T Consensus 8 i~v~i~--g~~i~~LlDTGA~vsiI 30 (100)
T PF00077_consen 8 ITVKIN--GKKIKALLDTGADVSII 30 (100)
T ss_dssp EEEEET--TEEEEEEEETTBSSEEE
T ss_pred EEEeEC--CEEEEEEEecCCCccee
Confidence 456666 57999999999999888
No 47
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=72.56 E-value=3.6 Score=30.43 Aligned_cols=18 Identities=11% Similarity=0.396 Sum_probs=15.3
Q ss_pred ceEEccccceeeechHHH
Q 036636 211 GCIIDSGSVLTYFHSDVY 228 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~~~ 228 (341)
.++||||+..+.++.+.+
T Consensus 18 ~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 18 KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEETTBSSEEESSGGS
T ss_pred EEEEecCCCcceeccccc
Confidence 399999999999997643
No 48
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=71.83 E-value=2.9 Score=32.33 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.9
Q ss_pred eEEccccc-eeeechHHHHHH
Q 036636 212 CIIDSGSV-LTYFHSDVYWKL 231 (341)
Q Consensus 212 ~iiDTGtt-~~~lp~~~~~~l 231 (341)
.+||||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999998765
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=70.35 E-value=40 Score=25.44 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=40.7
Q ss_pred CeEEeecCCCC----eEEEEEEcCCCeeE-EEecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCceeEEEEEEE
Q 036636 1 MVRLFIGTPSK----GVLLILDTGSALIY-AIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHE 75 (341)
Q Consensus 1 ~~~i~iGtP~q----~~~v~~DTGSs~lw-v~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~~~G~~~~D 75 (341)
.+++.|..|.| ++.+++|||.+..- ++.+- .+.+.-. ......+.-++|+...-....+
T Consensus 1 ~~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~-----a~~lgl~-----------~~~~~~~~tA~G~~~~~~v~~~ 64 (107)
T TIGR03698 1 TLDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDI-----VNKLGLP-----------ELDQRRVYLADGREVLTDVAKA 64 (107)
T ss_pred CEEEEEeCCCCCCceEEEEEEECCCCeEEecCHHH-----HHHcCCC-----------cccCcEEEecCCcEEEEEEEEE
Confidence 47888998833 67899999999765 41110 0000000 0112356667887777778888
Q ss_pred EEEEEecCCCc
Q 036636 76 TISVIGKGEGK 86 (341)
Q Consensus 76 ~v~i~~~~g~~ 86 (341)
++.+ ++.
T Consensus 65 ~v~i----gg~ 71 (107)
T TIGR03698 65 SIII----NGL 71 (107)
T ss_pred EEEE----CCE
Confidence 9999 665
No 50
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=70.12 E-value=5.1 Score=27.82 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.9
Q ss_pred eEEeecCCCCeEEEEEEcCCCeeEE
Q 036636 2 VRLFIGTPSKGVLLILDTGSALIYA 26 (341)
Q Consensus 2 ~~i~iGtP~q~~~v~~DTGSs~lwv 26 (341)
+.+.||. +.+..++||||+...+
T Consensus 11 v~~~I~g--~~~~alvDtGat~~fi 33 (72)
T PF13975_consen 11 VPVSIGG--VQVKALVDTGATHNFI 33 (72)
T ss_pred EEEEECC--EEEEEEEeCCCcceec
Confidence 5677884 8899999999999887
No 51
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=65.51 E-value=7.8 Score=28.21 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEeecCCCCeEEEEEEcCCCeeEE
Q 036636 3 RLFIGTPSKGVLLILDTGSALIYA 26 (341)
Q Consensus 3 ~i~iGtP~q~~~v~~DTGSs~lwv 26 (341)
.+.|+ .|.+.+++|||+.++-+
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi 23 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSII 23 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEE
Confidence 45666 79999999999999988
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.43 E-value=8.2 Score=31.55 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=21.2
Q ss_pred eEEeecCCCCeEEEEEEcCCCeeEE
Q 036636 2 VRLFIGTPSKGVLLILDTGSALIYA 26 (341)
Q Consensus 2 ~~i~iGtP~q~~~v~~DTGSs~lwv 26 (341)
+.+.+++-..++.++|||||....+
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfI 59 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFI 59 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCcccee
Confidence 3566777788999999999999888
No 53
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=64.17 E-value=9.1 Score=28.15 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=18.5
Q ss_pred ceEEccccceeeechHHHHHH
Q 036636 211 GCIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~~~~~l 231 (341)
.+.+|||++...+|...+.++
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEecCCEEEeccHHHHhhh
Confidence 488999999999999988765
No 54
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=62.70 E-value=52 Score=24.05 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=17.2
Q ss_pred CCceEEccccceeeechHHHH
Q 036636 209 EGGCIIDSGSVLTYFHSDVYW 229 (341)
Q Consensus 209 ~~~~iiDTGtt~~~lp~~~~~ 229 (341)
+...++|||+....+|.+..+
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CcEEEEeCCCceEeecccccc
Confidence 556899999999999977543
No 55
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=60.16 E-value=20 Score=30.56 Aligned_cols=36 Identities=8% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccceeeechHHHHHH
Q 036636 178 NNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 178 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l 231 (341)
.++|.++ ..|||+.+. .++|||.|.+.++++....+
T Consensus 103 ~GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 5677643 668888764 88999999999998866543
No 56
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=59.57 E-value=62 Score=30.02 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=32.3
Q ss_pred EEE-EEecCCCCceeechhhccceEEEEECCCCEEEEEcC
Q 036636 296 FLL-AVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKE 334 (341)
Q Consensus 296 ~C~-~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 334 (341)
.|- .++...+....||-..||++--.-|++++++-++..
T Consensus 307 ~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 454 566666778999999999999999999998887653
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=48.87 E-value=24 Score=27.57 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=22.3
Q ss_pred eEEEcCeeeecCCCCccccccCCCceEEccccceeeechHHHHHH
Q 036636 187 DISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKL 231 (341)
Q Consensus 187 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l 231 (341)
.++++|+.+ .|.+|||+-.+.++.+..+++
T Consensus 28 ~~~ing~~v---------------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV---------------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE---------------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE---------------EEEEeCCCCccccCHHHHHHc
Confidence 467788865 399999999999999877653
No 58
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=27.74 E-value=55 Score=21.86 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=16.4
Q ss_pred EEeecCCCCeEEEEEEcCCCeeEE
Q 036636 3 RLFIGTPSKGVLLILDTGSALIYA 26 (341)
Q Consensus 3 ~i~iGtP~q~~~v~~DTGSs~lwv 26 (341)
.+.++. ..+..++||||...-+
T Consensus 2 ~~~~~~--~~~~~liDtgs~~~~~ 23 (92)
T cd00303 2 KGKING--VPVRALVDSGASVNFI 23 (92)
T ss_pred EEEECC--EEEEEEEcCCCccccc
Confidence 455553 7889999999986544
No 59
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=26.92 E-value=69 Score=29.18 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.2
Q ss_pred ceEEccccceeeechH
Q 036636 211 GCIIDSGSVLTYFHSD 226 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~ 226 (341)
.++||||++.+++|..
T Consensus 25 ~v~~DTGSs~lWv~~~ 40 (317)
T cd06098 25 TVIFDTGSSNLWVPSS 40 (317)
T ss_pred EEEECCCccceEEecC
Confidence 4999999999999964
No 60
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=25.35 E-value=61 Score=29.69 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=14.2
Q ss_pred ceEEccccceeeechH
Q 036636 211 GCIIDSGSVLTYFHSD 226 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~ 226 (341)
.++||||++.+++|..
T Consensus 18 ~v~~DTGS~~~wv~~~ 33 (326)
T cd06096 18 SLILDTGSSSLSFPCS 33 (326)
T ss_pred EEEEeCCCCceEEecC
Confidence 4999999999999865
No 61
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=25.14 E-value=72 Score=28.35 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=17.6
Q ss_pred EEeecC---CCCeEEEEEEcCCCeeEE
Q 036636 3 RLFIGT---PSKGVLLILDTGSALIYA 26 (341)
Q Consensus 3 ~i~iGt---P~q~~~v~~DTGSs~lwv 26 (341)
.|.||. +.....+++|||++.+.+
T Consensus 165 ~i~vg~~~~~~~~~~~ivDTGTt~t~l 191 (273)
T cd05475 165 SLLFNGQPTGGKGLEVVFDSGSSYTYF 191 (273)
T ss_pred EEEECCEECcCCCceEEEECCCceEEc
Confidence 466663 234467999999999988
No 62
>PRK09784 hypothetical protein; Provisional
Probab=24.15 E-value=1.2e+02 Score=26.42 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=27.2
Q ss_pred eeEEEcCeeeecCCCCccccccCCCceEEccccce-eeechHHHHHHHHH
Q 036636 186 KDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVL-TYFHSDVYWKLHEK 234 (341)
Q Consensus 186 ~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~-~~lp~~~~~~l~~~ 234 (341)
.+|++|++..+.. +.-..+.+|.||..+ +|||++++.+-.+.
T Consensus 358 asislgnesfstd-------~dleygylintGnhYdvYLpPELfaqAy~L 400 (417)
T PRK09784 358 ASISLGNESFSTD-------EDLEYGYLINTGNHYDVYLPPELFAQAYKL 400 (417)
T ss_pred eeEEccCcccccc-------cccceeeEEecCceeEEecCHHHHHHHHHh
Confidence 4566665544332 222567889999876 59999988765443
No 63
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=23.30 E-value=54 Score=29.18 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=14.4
Q ss_pred ceEEccccceeeechH
Q 036636 211 GCIIDSGSVLTYFHSD 226 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~ 226 (341)
.+++|||++.+++|..
T Consensus 15 ~v~~DTGS~~~wv~~~ 30 (278)
T cd06097 15 NLDLDTGSSDLWVFSS 30 (278)
T ss_pred EEEEeCCCCceeEeeC
Confidence 4999999999999965
No 64
>PTZ00165 aspartyl protease; Provisional
Probab=21.29 E-value=68 Score=31.42 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=14.5
Q ss_pred ceEEccccceeeechH
Q 036636 211 GCIIDSGSVLTYFHSD 226 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~ 226 (341)
.+++|||++.+++|..
T Consensus 135 ~Vv~DTGSS~lWVps~ 150 (482)
T PTZ00165 135 VVVFDTGSSNLWIPSK 150 (482)
T ss_pred EEEEeCCCCCEEEEch
Confidence 4999999999999975
No 65
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=21.18 E-value=73 Score=28.42 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=13.0
Q ss_pred ceEEccccceeeec
Q 036636 211 GCIIDSGSVLTYFH 224 (341)
Q Consensus 211 ~~iiDTGtt~~~lp 224 (341)
.+++|||++.+++|
T Consensus 17 ~v~~DTgS~~~wv~ 30 (295)
T cd05474 17 TVLLDTGSSDLWVP 30 (295)
T ss_pred EEEEeCCCCcceee
Confidence 49999999999999
No 66
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=20.13 E-value=75 Score=28.04 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=13.6
Q ss_pred ceEEccccceeeech
Q 036636 211 GCIIDSGSVLTYFHS 225 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~ 225 (341)
.++||||++.+++|.
T Consensus 16 ~v~~DTGSs~~wv~~ 30 (265)
T cd05476 16 SLIVDTGSDLTWTQC 30 (265)
T ss_pred EEEecCCCCCEEEcC
Confidence 599999999999986
No 67
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=20.04 E-value=89 Score=28.41 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=14.1
Q ss_pred ceEEccccceeeechH
Q 036636 211 GCIIDSGSVLTYFHSD 226 (341)
Q Consensus 211 ~~iiDTGtt~~~lp~~ 226 (341)
.++||||++.+++|..
T Consensus 18 ~v~~DTGS~~~wv~~~ 33 (318)
T cd05477 18 LVLFDTGSSNLWVPSV 33 (318)
T ss_pred EEEEeCCCccEEEccC
Confidence 4999999999999853
Done!