Query 036637
Match_columns 250
No_of_seqs 128 out of 1612
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 2.6E-26 5.7E-31 216.1 21.2 215 34-250 23-260 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.7 2.7E-16 5.9E-21 132.4 10.9 94 157-250 1-100 (287)
3 PLN03210 Resistant to P. syrin 99.0 1.3E-09 2.8E-14 107.7 7.8 60 149-210 181-242 (1153)
4 PTZ00202 tuzin; Provisional 98.7 4.1E-07 8.9E-12 79.4 12.5 92 148-248 258-352 (550)
5 cd01128 rho_factor Transcripti 98.7 3.8E-08 8.3E-13 80.9 6.0 60 164-224 6-68 (249)
6 PRK09376 rho transcription ter 98.6 5.8E-08 1.3E-12 83.7 5.5 62 163-225 158-222 (416)
7 PRK00411 cdc6 cell division co 98.6 7.4E-07 1.6E-11 78.5 12.7 99 151-249 29-134 (394)
8 TIGR02928 orc1/cdc6 family rep 98.5 1.8E-06 4E-11 75.1 11.9 98 151-248 14-124 (365)
9 PF13191 AAA_16: AAA ATPase do 98.5 1.8E-07 3.8E-12 73.3 4.1 73 154-228 2-82 (185)
10 TIGR03015 pepcterm_ATPase puta 98.4 3.2E-06 7E-11 70.4 11.4 75 170-247 40-114 (269)
11 PF13401 AAA_22: AAA domain; P 98.4 1.1E-06 2.4E-11 64.9 7.1 78 172-249 3-84 (131)
12 PRK08118 topology modulation p 98.4 2.6E-07 5.6E-12 71.6 3.0 53 174-227 2-59 (167)
13 TIGR00767 rho transcription te 98.3 3.3E-06 7.1E-11 73.4 7.6 54 172-226 167-222 (415)
14 PRK11331 5-methylcytosine-spec 98.1 1.2E-05 2.7E-10 70.9 7.9 69 152-222 175-243 (459)
15 PF01637 Arch_ATPase: Archaeal 98.1 4.3E-06 9.4E-11 67.6 4.3 60 154-215 1-60 (234)
16 cd00009 AAA The AAA+ (ATPases 98.1 2.3E-05 5E-10 58.2 8.0 61 155-217 1-61 (151)
17 COG1474 CDC6 Cdc6-related prot 97.9 0.0002 4.3E-09 62.4 11.5 97 153-249 18-119 (366)
18 PRK07261 topology modulation p 97.8 5E-05 1.1E-09 59.1 6.3 54 175-228 2-56 (171)
19 PF05659 RPW8: Arabidopsis bro 97.8 0.00033 7.2E-09 52.8 10.1 110 2-125 3-113 (147)
20 PF05496 RuvB_N: Holliday junc 97.8 7.3E-05 1.6E-09 60.0 6.2 50 150-199 22-76 (233)
21 PRK13342 recombination factor 97.7 9.4E-05 2E-09 65.6 7.2 49 150-198 10-61 (413)
22 KOG2028 ATPase related to the 97.7 0.0001 2.3E-09 62.8 6.7 58 166-227 155-212 (554)
23 PF13207 AAA_17: AAA domain; P 97.7 3.8E-05 8.3E-10 55.8 3.6 24 175-198 1-24 (121)
24 PF05621 TniB: Bacterial TniB 97.7 0.00061 1.3E-08 57.1 11.1 77 172-248 60-141 (302)
25 PF05729 NACHT: NACHT domain 97.7 0.0001 2.2E-09 56.3 5.5 55 174-228 1-62 (166)
26 TIGR00635 ruvB Holliday juncti 97.6 7.1E-05 1.5E-09 63.6 4.9 48 152-199 4-56 (305)
27 KOG2543 Origin recognition com 97.6 0.00062 1.4E-08 58.4 9.9 73 152-229 6-81 (438)
28 KOG2004 Mitochondrial ATP-depe 97.6 0.0022 4.8E-08 59.3 13.9 65 151-220 410-480 (906)
29 PRK00080 ruvB Holliday junctio 97.6 0.00011 2.3E-09 63.2 4.9 50 150-199 23-77 (328)
30 PTZ00112 origin recognition co 97.5 0.0016 3.5E-08 61.9 12.4 97 151-247 754-862 (1164)
31 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00017 3.8E-09 62.0 5.6 79 153-231 52-148 (361)
32 COG2256 MGS1 ATPase related to 97.5 0.00037 8E-09 60.2 6.7 49 150-198 22-73 (436)
33 PRK06696 uridine kinase; Valid 97.4 0.00028 6.1E-09 57.2 5.5 42 157-198 3-47 (223)
34 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00058 1.3E-08 55.2 7.0 55 157-213 22-76 (226)
35 COG1618 Predicted nucleotide k 97.4 0.00024 5.2E-09 53.8 4.3 28 173-200 5-32 (179)
36 TIGR02903 spore_lon_C ATP-depe 97.4 0.00032 6.9E-09 65.3 5.9 63 150-212 152-217 (615)
37 PRK07667 uridine kinase; Provi 97.3 0.00044 9.4E-09 54.8 5.0 38 161-198 3-42 (193)
38 PRK15455 PrkA family serine pr 97.3 0.00042 9.2E-09 63.0 5.2 46 153-198 77-128 (644)
39 PF13173 AAA_14: AAA domain 97.3 0.00047 1E-08 50.8 4.7 40 173-215 2-41 (128)
40 COG0466 Lon ATP-dependent Lon 97.3 0.00046 1E-08 63.6 5.4 48 151-198 322-375 (782)
41 PRK00440 rfc replication facto 97.3 0.0018 3.8E-08 55.2 8.8 49 150-198 15-63 (319)
42 PF00448 SRP54: SRP54-type pro 97.2 0.00099 2.1E-08 52.9 6.6 58 173-232 1-59 (196)
43 PRK06547 hypothetical protein; 97.2 0.00068 1.5E-08 52.7 5.5 37 163-199 5-41 (172)
44 PRK12402 replication factor C 97.2 0.00048 1.1E-08 59.2 5.2 49 150-198 13-61 (337)
45 PLN03025 replication factor C 97.2 0.0015 3.1E-08 56.1 7.9 49 150-198 11-59 (319)
46 PRK05480 uridine/cytidine kina 97.2 0.0004 8.6E-09 55.7 4.2 28 170-197 3-30 (209)
47 PRK04195 replication factor C 97.2 0.00083 1.8E-08 60.9 6.5 49 150-198 12-64 (482)
48 PF13238 AAA_18: AAA domain; P 97.2 0.00035 7.5E-09 51.0 3.4 22 176-197 1-22 (129)
49 PRK05564 DNA polymerase III su 97.2 0.0043 9.2E-08 53.0 10.5 76 152-228 4-85 (313)
50 PF00485 PRK: Phosphoribulokin 97.2 0.00035 7.7E-09 55.4 3.5 25 175-199 1-25 (194)
51 COG2255 RuvB Holliday junction 97.2 0.00078 1.7E-08 55.7 5.3 51 150-200 24-79 (332)
52 TIGR03499 FlhF flagellar biosy 97.1 0.0024 5.3E-08 53.7 8.3 61 172-233 193-255 (282)
53 CHL00095 clpC Clp protease ATP 97.1 0.00068 1.5E-08 65.3 5.5 48 151-198 178-225 (821)
54 PRK08233 hypothetical protein; 97.1 0.00047 1E-08 53.7 3.7 26 173-198 3-28 (182)
55 PRK09270 nucleoside triphospha 97.1 0.005 1.1E-07 50.1 9.9 29 171-199 31-59 (229)
56 TIGR00235 udk uridine kinase. 97.1 0.00049 1.1E-08 55.2 3.7 27 172-198 5-31 (207)
57 PHA00729 NTP-binding motif con 97.1 0.00087 1.9E-08 54.1 5.0 36 162-197 6-41 (226)
58 TIGR03345 VI_ClpV1 type VI sec 97.1 0.00093 2E-08 64.4 5.9 48 150-197 185-232 (852)
59 KOG1532 GTPase XAB1, interacts 97.1 0.00089 1.9E-08 55.1 4.9 64 171-234 17-89 (366)
60 COG1102 Cmk Cytidylate kinase 97.1 0.00099 2.2E-08 50.5 4.8 45 175-232 2-46 (179)
61 PRK06762 hypothetical protein; 97.1 0.00059 1.3E-08 52.5 3.7 25 173-197 2-26 (166)
62 TIGR02639 ClpA ATP-dependent C 97.0 0.0011 2.4E-08 63.1 6.0 78 151-228 181-270 (731)
63 PRK05541 adenylylsulfate kinas 97.0 0.001 2.2E-08 51.8 4.8 37 171-209 5-41 (176)
64 PF13671 AAA_33: AAA domain; P 97.0 0.00068 1.5E-08 50.6 3.6 24 175-198 1-24 (143)
65 cd02019 NK Nucleoside/nucleoti 97.0 0.00078 1.7E-08 43.9 3.1 23 175-197 1-23 (69)
66 PRK03839 putative kinase; Prov 97.0 0.00082 1.8E-08 52.5 3.8 25 175-199 2-26 (180)
67 PTZ00301 uridine kinase; Provi 97.0 0.00082 1.8E-08 54.0 3.8 25 173-197 3-27 (210)
68 PHA02544 44 clamp loader, smal 97.0 0.0013 2.8E-08 56.1 5.3 48 150-197 19-67 (316)
69 PRK04040 adenylate kinase; Pro 97.0 0.00087 1.9E-08 52.9 3.7 47 173-230 2-48 (188)
70 PRK13341 recombination factor 96.9 0.0012 2.6E-08 62.4 5.1 49 150-198 26-77 (725)
71 PRK00771 signal recognition pa 96.9 0.0055 1.2E-07 54.6 8.8 60 171-233 93-154 (437)
72 cd02023 UMPK Uridine monophosp 96.9 0.00074 1.6E-08 53.6 3.0 23 175-197 1-23 (198)
73 PF07728 AAA_5: AAA domain (dy 96.9 0.0029 6.2E-08 47.1 6.0 43 176-223 2-44 (139)
74 PF12061 DUF3542: Protein of u 96.9 0.0044 9.6E-08 51.8 7.5 102 18-123 299-401 (402)
75 PRK10865 protein disaggregatio 96.9 0.0018 3.9E-08 62.7 6.0 47 151-197 177-223 (857)
76 PRK14962 DNA polymerase III su 96.9 0.0017 3.7E-08 58.5 5.4 49 150-198 12-61 (472)
77 TIGR01360 aden_kin_iso1 adenyl 96.9 0.0011 2.3E-08 52.0 3.7 26 172-197 2-27 (188)
78 PF00004 AAA: ATPase family as 96.9 0.0011 2.3E-08 48.6 3.4 23 176-198 1-23 (132)
79 PRK14957 DNA polymerase III su 96.9 0.0062 1.3E-07 55.7 9.0 48 150-197 14-62 (546)
80 TIGR01242 26Sp45 26S proteasom 96.9 0.0019 4.2E-08 56.3 5.4 49 150-198 120-181 (364)
81 COG0194 Gmk Guanylate kinase [ 96.9 0.0013 2.9E-08 51.1 3.8 25 173-197 4-28 (191)
82 PRK14961 DNA polymerase III su 96.8 0.0024 5.2E-08 55.7 5.9 49 150-198 14-63 (363)
83 PRK14963 DNA polymerase III su 96.8 0.0015 3.4E-08 59.3 4.8 49 150-198 12-61 (504)
84 TIGR02881 spore_V_K stage V sp 96.8 0.003 6.6E-08 52.5 6.3 46 152-197 6-66 (261)
85 PRK14722 flhF flagellar biosyn 96.8 0.0059 1.3E-07 53.2 8.2 62 172-233 136-198 (374)
86 cd02025 PanK Pantothenate kina 96.8 0.0072 1.6E-07 48.9 8.2 24 175-198 1-24 (220)
87 TIGR02237 recomb_radB DNA repa 96.8 0.0038 8.3E-08 49.9 6.5 46 173-221 12-57 (209)
88 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0037 8.1E-08 50.9 6.5 57 172-229 18-78 (235)
89 PRK12608 transcription termina 96.8 0.0078 1.7E-07 52.3 8.5 71 161-232 120-193 (380)
90 COG0572 Udk Uridine kinase [Nu 96.8 0.0015 3.3E-08 52.2 3.9 28 172-199 7-34 (218)
91 PRK10536 hypothetical protein; 96.8 0.0043 9.4E-08 51.1 6.6 56 150-207 53-108 (262)
92 COG3640 CooC CO dehydrogenase 96.8 0.0031 6.7E-08 50.8 5.5 43 175-218 2-44 (255)
93 PRK08903 DnaA regulatory inact 96.8 0.003 6.5E-08 51.3 5.7 27 171-197 40-66 (227)
94 PRK06893 DNA replication initi 96.8 0.0054 1.2E-07 50.0 7.1 40 171-212 37-76 (229)
95 cd02024 NRK1 Nicotinamide ribo 96.8 0.0011 2.3E-08 52.2 2.9 23 175-197 1-23 (187)
96 smart00382 AAA ATPases associa 96.8 0.0014 3E-08 47.9 3.4 39 173-213 2-40 (148)
97 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0026 5.5E-08 61.7 6.0 47 151-197 172-218 (852)
98 PRK03992 proteasome-activating 96.8 0.0019 4.1E-08 56.9 4.7 48 151-198 130-190 (389)
99 PRK00625 shikimate kinase; Pro 96.7 0.0014 3E-08 51.0 3.3 24 175-198 2-25 (173)
100 PF04665 Pox_A32: Poxvirus A32 96.7 0.0025 5.3E-08 52.1 4.8 38 173-212 13-50 (241)
101 TIGR00554 panK_bact pantothena 96.7 0.0027 5.8E-08 53.5 5.2 28 170-197 59-86 (290)
102 COG0237 CoaE Dephospho-CoA kin 96.7 0.0058 1.2E-07 48.7 6.8 23 173-195 2-24 (201)
103 COG1419 FlhF Flagellar GTP-bin 96.7 0.02 4.2E-07 50.0 10.5 74 158-233 184-264 (407)
104 PRK14949 DNA polymerase III su 96.7 0.0077 1.7E-07 57.7 8.7 49 150-198 14-63 (944)
105 PRK04841 transcriptional regul 96.7 0.0071 1.5E-07 59.0 8.9 68 152-229 14-83 (903)
106 TIGR00073 hypB hydrogenase acc 96.7 0.002 4.4E-08 51.6 4.2 32 166-197 15-46 (207)
107 TIGR02322 phosphon_PhnN phosph 96.7 0.0016 3.5E-08 50.8 3.4 25 174-198 2-26 (179)
108 PRK06217 hypothetical protein; 96.7 0.0015 3.3E-08 51.2 3.3 35 175-210 3-39 (183)
109 PRK00889 adenylylsulfate kinas 96.7 0.002 4.3E-08 50.1 3.8 27 172-198 3-29 (175)
110 PRK00131 aroK shikimate kinase 96.7 0.0019 4.2E-08 49.8 3.8 27 172-198 3-29 (175)
111 PRK14721 flhF flagellar biosyn 96.7 0.013 2.8E-07 51.9 9.3 62 172-233 190-252 (420)
112 TIGR00390 hslU ATP-dependent p 96.7 0.0071 1.5E-07 53.3 7.5 74 153-227 13-103 (441)
113 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0017 3.6E-08 50.8 3.3 24 175-198 1-24 (183)
114 cd02020 CMPK Cytidine monophos 96.7 0.0016 3.6E-08 48.7 3.1 24 175-198 1-24 (147)
115 PF08477 Miro: Miro-like prote 96.6 0.0019 4.1E-08 46.5 3.3 24 176-199 2-25 (119)
116 cd02028 UMPK_like Uridine mono 96.6 0.0015 3.4E-08 51.1 3.0 24 175-198 1-24 (179)
117 PRK09087 hypothetical protein; 96.6 0.0054 1.2E-07 49.9 6.2 35 164-198 35-69 (226)
118 PF03205 MobB: Molybdopterin g 96.6 0.0038 8.3E-08 46.8 4.9 39 174-213 1-39 (140)
119 TIGR00763 lon ATP-dependent pr 96.6 0.0099 2.1E-07 57.1 8.9 47 152-198 320-372 (775)
120 TIGR02236 recomb_radA DNA repa 96.6 0.0093 2E-07 50.9 7.9 59 172-231 94-156 (310)
121 PF00625 Guanylate_kin: Guanyl 96.6 0.0035 7.6E-08 49.1 4.9 39 173-213 2-40 (183)
122 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0047 1E-07 51.5 5.7 54 172-227 68-123 (274)
123 cd00227 CPT Chloramphenicol (C 96.6 0.0021 4.5E-08 50.1 3.5 24 174-197 3-26 (175)
124 PRK13975 thymidylate kinase; P 96.6 0.0057 1.2E-07 48.3 6.1 26 174-199 3-28 (196)
125 PRK10787 DNA-binding ATP-depen 96.6 0.014 3E-07 56.0 9.6 48 151-198 321-374 (784)
126 PRK13949 shikimate kinase; Pro 96.6 0.0021 4.5E-08 49.9 3.3 24 175-198 3-26 (169)
127 PRK10751 molybdopterin-guanine 96.6 0.0022 4.7E-08 49.8 3.4 28 172-199 5-32 (173)
128 PRK10463 hydrogenase nickel in 96.6 0.0043 9.3E-08 52.1 5.3 36 163-198 94-129 (290)
129 PLN03187 meiotic recombination 96.6 0.0084 1.8E-07 51.8 7.2 58 173-231 126-187 (344)
130 PRK13765 ATP-dependent proteas 96.6 0.0068 1.5E-07 56.5 7.1 79 150-232 29-107 (637)
131 TIGR02030 BchI-ChlI magnesium 96.6 0.0051 1.1E-07 53.0 5.8 47 151-197 3-49 (337)
132 CHL00081 chlI Mg-protoporyphyr 96.6 0.0041 8.9E-08 53.7 5.2 48 150-197 15-62 (350)
133 TIGR02238 recomb_DMC1 meiotic 96.5 0.0079 1.7E-07 51.3 6.8 59 172-231 95-157 (313)
134 TIGR03263 guanyl_kin guanylate 96.5 0.002 4.3E-08 50.2 3.0 23 174-196 2-24 (180)
135 COG0467 RAD55 RecA-superfamily 96.5 0.01 2.2E-07 49.3 7.4 50 171-224 21-70 (260)
136 CHL00181 cbbX CbbX; Provisiona 96.5 0.0067 1.5E-07 51.2 6.3 23 175-197 61-83 (287)
137 PRK12727 flagellar biosynthesi 96.5 0.012 2.6E-07 53.4 8.2 27 172-198 349-375 (559)
138 PRK08084 DNA replication initi 96.5 0.0053 1.2E-07 50.2 5.5 51 160-212 32-82 (235)
139 PRK00300 gmk guanylate kinase; 96.5 0.0026 5.6E-08 50.7 3.6 26 172-197 4-29 (205)
140 PRK03846 adenylylsulfate kinas 96.5 0.0029 6.2E-08 50.3 3.8 28 170-197 21-48 (198)
141 TIGR00176 mobB molybdopterin-g 96.5 0.0041 8.8E-08 47.5 4.5 34 175-209 1-34 (155)
142 TIGR00764 lon_rel lon-related 96.5 0.01 2.2E-07 55.3 7.9 77 151-231 17-93 (608)
143 PTZ00088 adenylate kinase 1; P 96.5 0.0045 9.7E-08 50.4 4.9 25 175-199 8-32 (229)
144 PRK13695 putative NTPase; Prov 96.5 0.0037 8.1E-08 48.5 4.3 24 175-198 2-25 (174)
145 PRK14955 DNA polymerase III su 96.5 0.0045 9.7E-08 54.7 5.3 49 150-198 14-63 (397)
146 cd02021 GntK Gluconate kinase 96.5 0.0023 4.9E-08 48.3 3.0 24 175-198 1-24 (150)
147 COG1936 Predicted nucleotide k 96.5 0.0022 4.8E-08 49.2 2.8 20 175-194 2-21 (180)
148 PRK08727 hypothetical protein; 96.5 0.011 2.4E-07 48.3 7.2 56 156-213 24-79 (233)
149 TIGR02012 tigrfam_recA protein 96.5 0.011 2.3E-07 50.6 7.2 53 172-231 54-106 (321)
150 PRK14958 DNA polymerase III su 96.5 0.018 3.9E-07 52.5 9.1 48 150-197 14-62 (509)
151 PRK06995 flhF flagellar biosyn 96.5 0.016 3.4E-07 52.3 8.5 60 173-233 256-317 (484)
152 PRK14951 DNA polymerase III su 96.5 0.013 2.8E-07 54.5 8.2 47 150-196 14-61 (618)
153 cd00983 recA RecA is a bacter 96.5 0.01 2.3E-07 50.7 7.1 52 173-231 55-106 (325)
154 PF01583 APS_kinase: Adenylyls 96.5 0.0037 8E-08 47.6 3.9 28 173-200 2-29 (156)
155 PF00910 RNA_helicase: RNA hel 96.5 0.0025 5.4E-08 45.4 2.8 23 176-198 1-23 (107)
156 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.045 9.7E-07 47.1 10.7 78 152-234 61-151 (358)
157 PRK14527 adenylate kinase; Pro 96.4 0.0041 8.8E-08 49.1 4.2 29 171-199 4-32 (191)
158 PRK14956 DNA polymerase III su 96.4 0.0046 9.9E-08 55.5 4.9 49 150-198 16-65 (484)
159 PRK13947 shikimate kinase; Pro 96.4 0.0029 6.3E-08 48.8 3.3 25 175-199 3-27 (171)
160 PRK11034 clpA ATP-dependent Cl 96.4 0.0044 9.5E-08 59.0 5.0 59 151-209 185-247 (758)
161 cd01120 RecA-like_NTPases RecA 96.4 0.0053 1.1E-07 46.4 4.6 39 175-215 1-39 (165)
162 PRK10078 ribose 1,5-bisphospho 96.4 0.0027 5.9E-08 49.9 3.1 24 174-197 3-26 (186)
163 PF13086 AAA_11: AAA domain; P 96.4 0.0082 1.8E-07 48.3 6.0 52 175-226 19-75 (236)
164 PRK11889 flhF flagellar biosyn 96.4 0.016 3.4E-07 50.8 7.8 27 172-198 240-266 (436)
165 TIGR00150 HI0065_YjeE ATPase, 96.4 0.01 2.2E-07 44.0 5.9 30 171-200 20-49 (133)
166 cd01672 TMPK Thymidine monopho 96.4 0.01 2.3E-07 46.6 6.4 24 175-198 2-25 (200)
167 PRK14530 adenylate kinase; Pro 96.4 0.0034 7.4E-08 50.6 3.6 24 175-198 5-28 (215)
168 PRK09354 recA recombinase A; P 96.4 0.014 3E-07 50.4 7.3 53 173-232 60-112 (349)
169 cd00464 SK Shikimate kinase (S 96.4 0.0033 7.2E-08 47.5 3.3 32 176-208 2-33 (154)
170 PF05673 DUF815: Protein of un 96.4 0.016 3.5E-07 47.3 7.3 74 148-225 23-102 (249)
171 PRK12724 flagellar biosynthesi 96.4 0.0079 1.7E-07 53.1 6.0 25 173-197 223-247 (432)
172 COG0563 Adk Adenylate kinase a 96.4 0.0063 1.4E-07 47.6 4.9 29 175-204 2-30 (178)
173 PRK05201 hslU ATP-dependent pr 96.4 0.012 2.6E-07 51.9 7.0 77 152-228 15-107 (443)
174 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0088 1.9E-07 46.0 5.7 24 175-198 2-25 (171)
175 PF03266 NTPase_1: NTPase; In 96.4 0.0035 7.6E-08 48.5 3.3 23 176-198 2-24 (168)
176 PF03029 ATP_bind_1: Conserved 96.4 0.0038 8.1E-08 51.2 3.6 54 178-233 1-65 (238)
177 cd03115 SRP The signal recogni 96.4 0.0086 1.9E-07 46.4 5.5 24 175-198 2-25 (173)
178 COG1428 Deoxynucleoside kinase 96.3 0.01 2.2E-07 47.2 5.8 45 173-222 4-48 (216)
179 COG2019 AdkA Archaeal adenylat 96.3 0.0035 7.7E-08 47.9 3.0 48 173-232 4-51 (189)
180 COG1126 GlnQ ABC-type polar am 96.3 0.0035 7.7E-08 50.0 3.2 35 172-209 27-61 (240)
181 cd00071 GMPK Guanosine monopho 96.3 0.0032 6.9E-08 47.0 2.8 23 175-197 1-23 (137)
182 PLN03186 DNA repair protein RA 96.3 0.012 2.6E-07 50.8 6.7 60 172-232 122-185 (342)
183 PRK04301 radA DNA repair and r 96.3 0.014 3E-07 50.0 7.0 59 172-231 101-163 (317)
184 PRK09361 radB DNA repair and r 96.3 0.013 2.8E-07 47.5 6.5 45 172-219 22-66 (225)
185 KOG3347 Predicted nucleotide k 96.3 0.0091 2E-07 44.8 5.0 24 175-198 9-32 (176)
186 PRK05057 aroK shikimate kinase 96.3 0.0045 9.9E-08 48.1 3.6 26 173-198 4-29 (172)
187 PRK08533 flagellar accessory p 96.3 0.016 3.4E-07 47.3 6.9 55 172-231 23-77 (230)
188 PRK05703 flhF flagellar biosyn 96.3 0.016 3.4E-07 51.7 7.4 38 173-211 221-259 (424)
189 PF03215 Rad17: Rad17 cell cyc 96.3 0.01 2.2E-07 54.1 6.3 54 153-210 20-78 (519)
190 PF08423 Rad51: Rad51; InterP 96.3 0.019 4.2E-07 47.6 7.5 58 173-231 38-99 (256)
191 PRK05896 DNA polymerase III su 96.3 0.0072 1.6E-07 55.7 5.3 48 150-197 14-62 (605)
192 COG1763 MobB Molybdopterin-gua 96.3 0.0047 1E-07 47.3 3.4 28 173-200 2-29 (161)
193 PRK01184 hypothetical protein; 96.3 0.014 3E-07 45.7 6.3 22 174-196 2-23 (184)
194 COG1100 GTPase SAR1 and relate 96.3 0.0029 6.3E-08 50.8 2.4 26 174-199 6-31 (219)
195 COG1703 ArgK Putative periplas 96.2 0.012 2.5E-07 49.3 5.9 61 161-221 37-99 (323)
196 PRK04182 cytidylate kinase; Pr 96.2 0.0047 1E-07 47.9 3.5 24 175-198 2-25 (180)
197 cd01393 recA_like RecA is a b 96.2 0.014 3.1E-07 47.1 6.5 50 172-221 18-71 (226)
198 TIGR01313 therm_gnt_kin carboh 96.2 0.0035 7.6E-08 48.0 2.7 22 176-197 1-22 (163)
199 PRK05439 pantothenate kinase; 96.2 0.0089 1.9E-07 50.8 5.4 27 171-197 84-110 (311)
200 PRK07003 DNA polymerase III su 96.2 0.024 5.2E-07 53.6 8.5 49 150-198 14-63 (830)
201 PF02562 PhoH: PhoH-like prote 96.2 0.0065 1.4E-07 48.5 4.2 49 159-209 7-55 (205)
202 COG1116 TauB ABC-type nitrate/ 96.2 0.0041 8.9E-08 50.6 3.0 26 172-197 28-53 (248)
203 cd01394 radB RadB. The archaea 96.2 0.017 3.7E-07 46.5 6.7 42 172-215 18-59 (218)
204 cd04139 RalA_RalB RalA/RalB su 96.2 0.0043 9.3E-08 47.0 3.0 23 175-197 2-24 (164)
205 PRK14974 cell division protein 96.2 0.015 3.3E-07 50.0 6.6 59 171-232 138-198 (336)
206 PRK12339 2-phosphoglycerate ki 96.2 0.0058 1.3E-07 48.6 3.8 25 173-197 3-27 (197)
207 TIGR00041 DTMP_kinase thymidyl 96.2 0.019 4.2E-07 45.2 6.8 26 174-199 4-29 (195)
208 PF13245 AAA_19: Part of AAA d 96.2 0.014 3.1E-07 38.7 5.1 26 172-197 9-35 (76)
209 PRK14737 gmk guanylate kinase; 96.2 0.0053 1.1E-07 48.4 3.4 26 172-197 3-28 (186)
210 PLN02200 adenylate kinase fami 96.2 0.0065 1.4E-07 49.7 4.1 27 172-198 42-68 (234)
211 PRK14970 DNA polymerase III su 96.2 0.01 2.3E-07 51.8 5.6 49 150-198 15-64 (367)
212 PRK13946 shikimate kinase; Pro 96.2 0.0057 1.2E-07 48.0 3.6 26 173-198 10-35 (184)
213 PTZ00454 26S protease regulato 96.2 0.011 2.4E-07 52.2 5.7 48 151-198 144-204 (398)
214 PF03193 DUF258: Protein of un 96.2 0.0098 2.1E-07 45.5 4.7 35 160-197 25-59 (161)
215 PF03308 ArgK: ArgK protein; 96.1 0.015 3.3E-07 47.8 6.0 40 160-199 14-55 (266)
216 PRK14960 DNA polymerase III su 96.1 0.0087 1.9E-07 55.6 5.1 48 150-197 13-61 (702)
217 COG1124 DppF ABC-type dipeptid 96.1 0.0047 1E-07 50.1 3.0 26 172-197 32-57 (252)
218 PF00005 ABC_tran: ABC transpo 96.1 0.0045 9.7E-08 45.8 2.8 26 173-198 11-36 (137)
219 cd02027 APSK Adenosine 5'-phos 96.1 0.0049 1.1E-07 46.7 3.0 24 175-198 1-24 (149)
220 PRK13948 shikimate kinase; Pro 96.1 0.0071 1.5E-07 47.4 3.9 28 171-198 8-35 (182)
221 PRK13407 bchI magnesium chelat 96.1 0.01 2.2E-07 51.1 5.1 48 150-197 6-53 (334)
222 TIGR02239 recomb_RAD51 DNA rep 96.1 0.019 4.1E-07 49.1 6.8 59 172-231 95-157 (316)
223 PF01926 MMR_HSR1: 50S ribosom 96.1 0.0047 1E-07 44.4 2.7 21 176-196 2-22 (116)
224 COG0003 ArsA Predicted ATPase 96.1 0.014 3.1E-07 49.8 5.9 49 173-223 2-50 (322)
225 cd00820 PEPCK_HprK Phosphoenol 96.1 0.006 1.3E-07 43.4 3.1 22 173-194 15-36 (107)
226 PRK09825 idnK D-gluconate kina 96.1 0.006 1.3E-07 47.6 3.4 26 174-199 4-29 (176)
227 PRK12726 flagellar biosynthesi 96.1 0.032 6.9E-07 48.7 8.0 60 172-233 205-265 (407)
228 PRK14738 gmk guanylate kinase; 96.1 0.0062 1.3E-07 48.8 3.5 25 172-196 12-36 (206)
229 PRK00698 tmk thymidylate kinas 96.1 0.021 4.5E-07 45.3 6.6 26 174-199 4-29 (205)
230 PF02367 UPF0079: Uncharacteri 96.1 0.011 2.3E-07 43.2 4.4 30 171-200 13-42 (123)
231 TIGR02902 spore_lonB ATP-depen 96.1 0.0088 1.9E-07 54.9 4.9 47 151-197 64-110 (531)
232 PRK14964 DNA polymerase III su 96.1 0.0099 2.1E-07 53.7 5.1 46 150-195 11-57 (491)
233 PTZ00035 Rad51 protein; Provis 96.1 0.03 6.5E-07 48.4 7.9 59 172-231 117-179 (337)
234 PRK06761 hypothetical protein; 96.1 0.0094 2E-07 50.0 4.6 33 174-207 4-36 (282)
235 PF13521 AAA_28: AAA domain; P 96.1 0.005 1.1E-07 47.2 2.8 21 176-196 2-22 (163)
236 TIGR02880 cbbX_cfxQ probable R 96.1 0.02 4.3E-07 48.2 6.6 24 175-198 60-83 (284)
237 PRK09112 DNA polymerase III su 96.1 0.019 4.1E-07 49.8 6.7 51 148-198 19-70 (351)
238 COG3899 Predicted ATPase [Gene 96.1 0.03 6.6E-07 54.2 8.6 75 154-228 2-83 (849)
239 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.049 1.1E-06 44.5 8.8 53 172-230 20-73 (237)
240 TIGR03574 selen_PSTK L-seryl-t 96.0 0.0054 1.2E-07 50.6 3.1 24 175-198 1-24 (249)
241 PLN02796 D-glycerate 3-kinase 96.0 0.0068 1.5E-07 52.1 3.6 28 172-199 99-126 (347)
242 PRK12323 DNA polymerase III su 96.0 0.029 6.3E-07 52.2 7.9 49 150-198 14-63 (700)
243 PLN02165 adenylate isopentenyl 96.0 0.0093 2E-07 51.0 4.4 31 168-198 38-68 (334)
244 PRK14493 putative bifunctional 96.0 0.0072 1.6E-07 50.6 3.7 27 174-200 2-28 (274)
245 TIGR01241 FtsH_fam ATP-depende 96.0 0.016 3.5E-07 52.7 6.3 50 150-199 53-114 (495)
246 PRK12723 flagellar biosynthesi 96.0 0.041 8.8E-07 48.4 8.5 61 172-233 173-237 (388)
247 PRK14969 DNA polymerase III su 96.0 0.043 9.4E-07 50.3 9.0 48 150-197 14-62 (527)
248 PRK14723 flhF flagellar biosyn 96.0 0.038 8.2E-07 52.4 8.7 71 173-244 185-258 (767)
249 TIGR02397 dnaX_nterm DNA polym 96.0 0.015 3.3E-07 50.4 5.8 48 150-197 12-60 (355)
250 cd02022 DPCK Dephospho-coenzym 96.0 0.0058 1.3E-07 47.8 2.9 21 175-195 1-21 (179)
251 PTZ00361 26 proteosome regulat 96.0 0.015 3.2E-07 52.0 5.7 48 151-198 182-242 (438)
252 PRK14954 DNA polymerase III su 96.0 0.011 2.4E-07 55.0 5.1 48 150-197 14-62 (620)
253 PRK05642 DNA replication initi 96.0 0.036 7.7E-07 45.3 7.6 38 173-212 45-82 (234)
254 TIGR02640 gas_vesic_GvpN gas v 96.0 0.041 8.9E-07 45.8 8.1 56 159-221 9-64 (262)
255 TIGR00602 rad24 checkpoint pro 96.0 0.011 2.3E-07 55.2 4.9 51 148-198 80-135 (637)
256 cd01428 ADK Adenylate kinase ( 96.0 0.0068 1.5E-07 47.7 3.3 23 176-198 2-24 (194)
257 cd03116 MobB Molybdenum is an 96.0 0.0079 1.7E-07 46.1 3.5 26 174-199 2-27 (159)
258 COG1120 FepC ABC-type cobalami 96.0 0.0059 1.3E-07 50.4 2.9 28 171-198 26-53 (258)
259 PRK06620 hypothetical protein; 96.0 0.0061 1.3E-07 49.1 3.0 25 174-198 45-69 (214)
260 PRK09435 membrane ATPase/prote 96.0 0.015 3.2E-07 50.0 5.4 38 161-198 42-81 (332)
261 TIGR01287 nifH nitrogenase iro 96.0 0.0055 1.2E-07 51.2 2.8 26 174-199 1-26 (275)
262 COG3638 ABC-type phosphate/pho 96.0 0.022 4.8E-07 46.1 6.1 26 172-197 29-54 (258)
263 cd04119 RJL RJL (RabJ-Like) su 96.0 0.0065 1.4E-07 46.2 3.0 22 176-197 3-24 (168)
264 PF06309 Torsin: Torsin; Inte 96.0 0.023 4.9E-07 41.6 5.6 45 152-196 25-76 (127)
265 cd04155 Arl3 Arl3 subfamily. 95.9 0.0058 1.3E-07 47.0 2.7 25 172-196 13-37 (173)
266 PLN02348 phosphoribulokinase 95.9 0.0088 1.9E-07 52.2 3.9 29 170-198 46-74 (395)
267 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.9 0.011 2.3E-07 45.8 4.2 35 162-196 4-38 (174)
268 PRK08356 hypothetical protein; 95.9 0.0076 1.6E-07 47.8 3.4 22 173-194 5-26 (195)
269 PRK06645 DNA polymerase III su 95.9 0.013 2.7E-07 53.4 5.1 49 150-198 19-68 (507)
270 cd01131 PilT Pilus retraction 95.9 0.014 3E-07 46.5 4.8 24 174-197 2-25 (198)
271 PRK14490 putative bifunctional 95.9 0.016 3.5E-07 50.7 5.6 28 172-199 4-31 (369)
272 smart00173 RAS Ras subfamily o 95.9 0.0074 1.6E-07 45.9 3.1 23 175-197 2-24 (164)
273 PRK08099 bifunctional DNA-bind 95.9 0.0087 1.9E-07 52.8 3.8 29 170-198 216-244 (399)
274 PF02374 ArsA_ATPase: Anion-tr 95.9 0.017 3.7E-07 49.1 5.4 48 174-223 2-49 (305)
275 PRK14532 adenylate kinase; Pro 95.9 0.0079 1.7E-07 47.2 3.2 23 176-198 3-25 (188)
276 PF00154 RecA: recA bacterial 95.9 0.045 9.7E-07 46.8 7.9 54 173-233 53-106 (322)
277 TIGR01425 SRP54_euk signal rec 95.9 0.024 5.2E-07 50.3 6.5 59 171-232 98-158 (429)
278 PRK13768 GTPase; Provisional 95.9 0.0095 2.1E-07 49.3 3.8 27 173-199 2-28 (253)
279 PRK03731 aroL shikimate kinase 95.9 0.0093 2E-07 46.0 3.5 25 174-198 3-27 (171)
280 PF13604 AAA_30: AAA domain; P 95.8 0.014 3E-07 46.4 4.5 38 163-200 8-45 (196)
281 PRK07994 DNA polymerase III su 95.8 0.014 3.1E-07 54.4 5.2 48 150-197 14-62 (647)
282 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.8 0.0079 1.7E-07 48.4 3.2 26 172-197 29-54 (218)
283 cd01983 Fer4_NifH The Fer4_Nif 95.8 0.0085 1.8E-07 41.0 2.9 25 175-199 1-25 (99)
284 KOG2227 Pre-initiation complex 95.8 0.12 2.5E-06 46.0 10.4 80 149-228 147-230 (529)
285 TIGR00064 ftsY signal recognit 95.8 0.012 2.5E-07 49.3 4.2 28 171-198 70-97 (272)
286 PRK12377 putative replication 95.8 0.021 4.5E-07 47.1 5.6 39 172-212 100-138 (248)
287 cd02117 NifH_like This family 95.8 0.0074 1.6E-07 48.5 2.9 25 174-198 1-25 (212)
288 PLN02318 phosphoribulokinase/u 95.8 0.012 2.5E-07 54.1 4.4 28 170-197 62-89 (656)
289 COG1136 SalX ABC-type antimicr 95.8 0.0085 1.8E-07 48.4 3.2 26 172-197 30-55 (226)
290 cd01862 Rab7 Rab7 subfamily. 95.8 0.0072 1.6E-07 46.2 2.7 22 175-196 2-23 (172)
291 TIGR01650 PD_CobS cobaltochela 95.8 0.05 1.1E-06 46.5 7.9 40 157-198 50-89 (327)
292 TIGR00750 lao LAO/AO transport 95.8 0.024 5.3E-07 48.1 6.2 37 162-198 21-59 (300)
293 cd00876 Ras Ras family. The R 95.8 0.0081 1.8E-07 45.2 2.9 21 176-196 2-22 (160)
294 PLN02924 thymidylate kinase 95.8 0.032 6.9E-07 45.2 6.5 54 173-227 16-69 (220)
295 TIGR03689 pup_AAA proteasome A 95.8 0.015 3.2E-07 52.8 5.0 48 151-198 181-241 (512)
296 PF07726 AAA_3: ATPase family 95.8 0.011 2.3E-07 43.5 3.3 27 176-204 2-28 (131)
297 cd03225 ABC_cobalt_CbiO_domain 95.8 0.0086 1.9E-07 47.9 3.2 26 172-197 26-51 (211)
298 cd04138 H_N_K_Ras_like H-Ras/N 95.8 0.0072 1.6E-07 45.6 2.6 23 175-197 3-25 (162)
299 KOG0991 Replication factor C, 95.8 0.016 3.4E-07 46.9 4.5 77 148-224 23-99 (333)
300 cd04159 Arl10_like Arl10-like 95.8 0.0069 1.5E-07 45.3 2.5 21 176-196 2-22 (159)
301 cd01878 HflX HflX subfamily. 95.8 0.0088 1.9E-07 47.5 3.2 27 171-197 39-65 (204)
302 cd04163 Era Era subfamily. Er 95.8 0.0095 2.1E-07 44.9 3.2 24 173-196 3-26 (168)
303 PRK08691 DNA polymerase III su 95.8 0.014 3.1E-07 54.5 4.9 48 150-197 14-62 (709)
304 cd00879 Sar1 Sar1 subfamily. 95.8 0.018 3.9E-07 45.1 4.9 25 172-196 18-42 (190)
305 TIGR00960 3a0501s02 Type II (G 95.8 0.0087 1.9E-07 48.1 3.1 26 172-197 28-53 (216)
306 cd02026 PRK Phosphoribulokinas 95.8 0.008 1.7E-07 50.3 3.0 24 175-198 1-24 (273)
307 cd00154 Rab Rab family. Rab G 95.8 0.009 2E-07 44.6 3.0 23 176-198 3-25 (159)
308 PRK13236 nitrogenase reductase 95.7 0.0096 2.1E-07 50.5 3.4 29 170-198 3-31 (296)
309 cd01673 dNK Deoxyribonucleosid 95.7 0.009 2E-07 47.1 3.1 23 175-197 1-23 (193)
310 TIGR00959 ffh signal recogniti 95.7 0.034 7.4E-07 49.5 7.0 27 171-197 97-123 (428)
311 PRK10867 signal recognition pa 95.7 0.033 7.3E-07 49.6 6.9 28 171-198 98-125 (433)
312 PRK14531 adenylate kinase; Pro 95.7 0.013 2.8E-07 45.9 3.9 26 174-199 3-28 (183)
313 TIGR01166 cbiO cobalt transpor 95.7 0.0093 2E-07 46.9 3.1 26 172-197 17-42 (190)
314 cd04113 Rab4 Rab4 subfamily. 95.7 0.0091 2E-07 45.3 3.0 22 176-197 3-24 (161)
315 cd04160 Arfrp1 Arfrp1 subfamil 95.7 0.0095 2.1E-07 45.4 3.1 21 176-196 2-22 (167)
316 PRK13230 nitrogenase reductase 95.7 0.0083 1.8E-07 50.3 3.0 25 174-198 2-26 (279)
317 TIGR00231 small_GTP small GTP- 95.7 0.0091 2E-07 44.4 2.9 24 175-198 3-26 (161)
318 PTZ00494 tuzin-like protein; P 95.7 0.072 1.6E-06 47.4 8.6 75 150-232 369-446 (664)
319 cd03238 ABC_UvrA The excision 95.7 0.0094 2E-07 46.5 3.0 24 172-195 20-43 (176)
320 cd03114 ArgK-like The function 95.7 0.0091 2E-07 45.2 2.9 24 175-198 1-24 (148)
321 TIGR00101 ureG urease accessor 95.7 0.012 2.6E-07 46.9 3.7 25 174-198 2-26 (199)
322 PRK10416 signal recognition pa 95.7 0.013 2.8E-07 50.1 4.1 28 171-198 112-139 (318)
323 cd00878 Arf_Arl Arf (ADP-ribos 95.7 0.0072 1.6E-07 45.7 2.3 22 176-197 2-23 (158)
324 smart00178 SAR Sar1p-like memb 95.7 0.018 3.8E-07 45.1 4.6 36 161-196 4-40 (184)
325 PRK06067 flagellar accessory p 95.7 0.037 8.1E-07 45.1 6.7 55 172-231 24-78 (234)
326 PRK14529 adenylate kinase; Pro 95.7 0.048 1E-06 44.2 7.1 24 176-199 3-26 (223)
327 PRK13232 nifH nitrogenase redu 95.7 0.0087 1.9E-07 50.0 3.0 25 174-198 2-26 (273)
328 PF00071 Ras: Ras family; Int 95.7 0.011 2.3E-07 44.9 3.2 22 176-197 2-23 (162)
329 PF00158 Sigma54_activat: Sigm 95.7 0.02 4.3E-07 44.3 4.7 43 155-197 2-46 (168)
330 cd02040 NifH NifH gene encodes 95.7 0.0088 1.9E-07 49.7 2.9 25 174-198 2-26 (270)
331 cd04124 RabL2 RabL2 subfamily. 95.7 0.0086 1.9E-07 45.6 2.7 22 176-197 3-24 (161)
332 cd01130 VirB11-like_ATPase Typ 95.7 0.016 3.6E-07 45.5 4.3 37 160-197 13-49 (186)
333 cd01876 YihA_EngB The YihA (En 95.7 0.0092 2E-07 45.1 2.8 19 176-194 2-20 (170)
334 PHA02530 pseT polynucleotide k 95.7 0.012 2.5E-07 49.9 3.6 24 174-197 3-26 (300)
335 cd03229 ABC_Class3 This class 95.7 0.011 2.3E-07 46.1 3.2 26 172-197 25-50 (178)
336 PRK15453 phosphoribulokinase; 95.7 0.014 3E-07 48.8 3.9 27 171-197 3-29 (290)
337 smart00175 RAB Rab subfamily o 95.7 0.0095 2.1E-07 45.2 2.8 22 176-197 3-24 (164)
338 cd03261 ABC_Org_Solvent_Resist 95.6 0.01 2.2E-07 48.4 3.2 26 172-197 25-50 (235)
339 PF07693 KAP_NTPase: KAP famil 95.6 0.074 1.6E-06 45.4 8.6 72 160-231 4-83 (325)
340 PRK13531 regulatory ATPase Rav 95.6 0.029 6.3E-07 50.4 6.1 51 152-204 20-70 (498)
341 cd02029 PRK_like Phosphoribulo 95.6 0.047 1E-06 45.4 6.9 24 175-198 1-24 (277)
342 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.045 9.7E-07 44.4 6.8 54 172-230 19-72 (229)
343 cd01124 KaiC KaiC is a circadi 95.6 0.017 3.8E-07 45.0 4.3 43 176-222 2-44 (187)
344 cd03222 ABC_RNaseL_inhibitor T 95.6 0.011 2.3E-07 46.3 3.0 28 171-198 23-50 (177)
345 PRK05537 bifunctional sulfate 95.6 0.026 5.6E-07 52.2 5.9 47 153-199 370-418 (568)
346 TIGR02315 ABC_phnC phosphonate 95.6 0.011 2.3E-07 48.5 3.2 26 172-197 27-52 (243)
347 cd03269 ABC_putative_ATPase Th 95.6 0.011 2.4E-07 47.3 3.2 26 172-197 25-50 (210)
348 TIGR00455 apsK adenylylsulfate 95.6 0.015 3.2E-07 45.5 3.8 28 171-198 16-43 (184)
349 TIGR00017 cmk cytidylate kinas 95.6 0.013 2.9E-07 47.3 3.6 25 174-198 3-27 (217)
350 PF05970 PIF1: PIF1-like helic 95.6 0.035 7.6E-07 48.5 6.5 71 160-233 9-81 (364)
351 cd03263 ABC_subfamily_A The AB 95.6 0.011 2.4E-07 47.6 3.2 26 172-197 27-52 (220)
352 cd03297 ABC_ModC_molybdenum_tr 95.6 0.012 2.6E-07 47.2 3.4 26 171-197 22-47 (214)
353 smart00072 GuKc Guanylate kina 95.6 0.013 2.7E-07 46.1 3.3 25 173-197 2-26 (184)
354 cd03293 ABC_NrtD_SsuB_transpor 95.6 0.011 2.4E-07 47.6 3.2 26 172-197 29-54 (220)
355 TIGR02673 FtsE cell division A 95.6 0.011 2.5E-07 47.3 3.2 26 172-197 27-52 (214)
356 PRK13541 cytochrome c biogenes 95.6 0.012 2.5E-07 46.6 3.2 26 172-197 25-50 (195)
357 cd03256 ABC_PhnC_transporter A 95.6 0.011 2.4E-07 48.3 3.2 26 172-197 26-51 (241)
358 PRK06835 DNA replication prote 95.6 0.56 1.2E-05 40.4 13.6 39 173-213 183-221 (329)
359 PF00406 ADK: Adenylate kinase 95.6 0.013 2.8E-07 44.3 3.3 21 178-198 1-21 (151)
360 cd04136 Rap_like Rap-like subf 95.6 0.01 2.2E-07 45.0 2.7 22 175-196 3-24 (163)
361 PRK09111 DNA polymerase III su 95.6 0.021 4.6E-07 53.0 5.2 48 150-197 22-70 (598)
362 TIGR01351 adk adenylate kinase 95.6 0.013 2.9E-07 46.9 3.4 23 176-198 2-24 (210)
363 PRK14952 DNA polymerase III su 95.6 0.021 4.6E-07 52.8 5.1 49 150-198 11-60 (584)
364 PRK07940 DNA polymerase III su 95.6 0.025 5.5E-07 49.9 5.4 46 152-197 5-60 (394)
365 cd03260 ABC_PstB_phosphate_tra 95.6 0.012 2.6E-07 47.7 3.2 26 172-197 25-50 (227)
366 COG0468 RecA RecA/RadA recombi 95.6 0.044 9.4E-07 45.9 6.5 49 172-222 59-107 (279)
367 cd03259 ABC_Carb_Solutes_like 95.5 0.012 2.6E-07 47.2 3.2 26 172-197 25-50 (213)
368 COG4608 AppF ABC-type oligopep 95.5 0.011 2.4E-07 48.8 2.9 59 172-232 38-100 (268)
369 PRK08154 anaerobic benzoate ca 95.5 0.025 5.4E-07 48.3 5.2 27 172-198 132-158 (309)
370 PRK10584 putative ABC transpor 95.5 0.012 2.6E-07 47.7 3.2 26 172-197 35-60 (228)
371 cd03226 ABC_cobalt_CbiO_domain 95.5 0.012 2.6E-07 46.9 3.1 26 172-197 25-50 (205)
372 cd03292 ABC_FtsE_transporter F 95.5 0.012 2.6E-07 47.1 3.2 26 172-197 26-51 (214)
373 cd01864 Rab19 Rab19 subfamily. 95.5 0.015 3.3E-07 44.3 3.5 24 173-196 3-26 (165)
374 PRK04328 hypothetical protein; 95.5 0.034 7.4E-07 45.9 5.9 54 172-230 22-75 (249)
375 PLN00020 ribulose bisphosphate 95.5 0.015 3.2E-07 50.5 3.7 29 171-199 146-174 (413)
376 cd03264 ABC_drug_resistance_li 95.5 0.011 2.4E-07 47.3 2.9 23 175-197 27-49 (211)
377 cd03235 ABC_Metallic_Cations A 95.5 0.011 2.4E-07 47.4 2.9 26 172-197 24-49 (213)
378 PRK00279 adk adenylate kinase; 95.5 0.015 3.3E-07 46.8 3.6 24 175-198 2-25 (215)
379 TIGR02211 LolD_lipo_ex lipopro 95.5 0.013 2.7E-07 47.3 3.2 26 172-197 30-55 (221)
380 PRK02496 adk adenylate kinase; 95.5 0.014 3E-07 45.7 3.4 24 175-198 3-26 (184)
381 PRK14971 DNA polymerase III su 95.5 0.18 4E-06 47.1 11.1 48 150-197 15-63 (614)
382 PF01078 Mg_chelatase: Magnesi 95.5 0.033 7.1E-07 44.4 5.4 43 151-195 2-44 (206)
383 TIGR02528 EutP ethanolamine ut 95.5 0.012 2.6E-07 43.7 2.8 23 175-197 2-24 (142)
384 cd04123 Rab21 Rab21 subfamily. 95.5 0.013 2.7E-07 44.2 3.0 23 175-197 2-24 (162)
385 PRK15177 Vi polysaccharide exp 95.5 0.014 3E-07 46.9 3.4 26 172-197 12-37 (213)
386 PRK14528 adenylate kinase; Pro 95.5 0.018 3.9E-07 45.3 3.9 25 174-198 2-26 (186)
387 cd03265 ABC_DrrA DrrA is the A 95.5 0.013 2.8E-07 47.3 3.2 26 172-197 25-50 (220)
388 TIGR03864 PQQ_ABC_ATP ABC tran 95.5 0.013 2.8E-07 47.8 3.2 26 172-197 26-51 (236)
389 cd04177 RSR1 RSR1 subgroup. R 95.5 0.013 2.8E-07 44.9 3.1 23 176-198 4-26 (168)
390 PF10662 PduV-EutP: Ethanolami 95.5 0.014 2.9E-07 43.8 3.0 24 174-197 2-25 (143)
391 cd00157 Rho Rho (Ras homology) 95.5 0.013 2.8E-07 44.8 3.0 22 176-197 3-24 (171)
392 cd03296 ABC_CysA_sulfate_impor 95.5 0.013 2.8E-07 47.9 3.2 26 172-197 27-52 (239)
393 PLN03046 D-glycerate 3-kinase; 95.4 0.017 3.8E-07 50.8 3.9 27 172-198 211-237 (460)
394 COG4619 ABC-type uncharacteriz 95.4 0.013 2.9E-07 45.0 2.8 26 172-197 28-53 (223)
395 PRK13538 cytochrome c biogenes 95.4 0.014 3E-07 46.6 3.1 26 172-197 26-51 (204)
396 PRK11629 lolD lipoprotein tran 95.4 0.014 3E-07 47.6 3.2 26 172-197 34-59 (233)
397 PTZ00133 ADP-ribosylation fact 95.4 0.024 5.2E-07 44.3 4.4 34 163-196 7-40 (182)
398 PRK13235 nifH nitrogenase redu 95.4 0.012 2.6E-07 49.2 2.9 24 174-197 2-25 (274)
399 PRK13233 nifH nitrogenase redu 95.4 0.012 2.7E-07 49.1 3.0 25 174-198 3-27 (275)
400 cd03257 ABC_NikE_OppD_transpor 95.4 0.013 2.9E-07 47.4 3.1 26 172-197 30-55 (228)
401 PF00025 Arf: ADP-ribosylation 95.4 0.031 6.6E-07 43.5 5.0 35 163-197 3-38 (175)
402 PRK11248 tauB taurine transpor 95.4 0.014 3E-07 48.4 3.2 26 172-197 26-51 (255)
403 COG4240 Predicted kinase [Gene 95.4 0.062 1.4E-06 43.4 6.6 57 171-228 48-104 (300)
404 TIGR03608 L_ocin_972_ABC putat 95.4 0.014 3.1E-07 46.4 3.2 26 172-197 23-48 (206)
405 cd01898 Obg Obg subfamily. Th 95.4 0.012 2.6E-07 45.0 2.6 21 176-196 3-23 (170)
406 PRK10247 putative ABC transpor 95.4 0.014 3.1E-07 47.3 3.2 26 172-197 32-57 (225)
407 cd03224 ABC_TM1139_LivF_branch 95.4 0.014 3.1E-07 47.0 3.2 26 172-197 25-50 (222)
408 cd01860 Rab5_related Rab5-rela 95.4 0.011 2.4E-07 44.8 2.4 23 175-197 3-25 (163)
409 cd01129 PulE-GspE PulE/GspE Th 95.4 0.024 5.2E-07 47.2 4.5 42 156-197 63-104 (264)
410 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.014 3.1E-07 48.0 3.2 26 172-197 24-49 (246)
411 cd04140 ARHI_like ARHI subfami 95.4 0.014 3.1E-07 44.5 3.0 23 175-197 3-25 (165)
412 cd04137 RheB Rheb (Ras Homolog 95.4 0.016 3.5E-07 44.9 3.3 23 175-197 3-25 (180)
413 PRK07429 phosphoribulokinase; 95.4 0.018 4E-07 49.4 3.8 28 171-198 6-33 (327)
414 PRK13976 thymidylate kinase; P 95.4 0.051 1.1E-06 43.6 6.2 51 175-226 2-53 (209)
415 PRK14730 coaE dephospho-CoA ki 95.4 0.017 3.8E-07 45.8 3.5 24 174-197 2-25 (195)
416 cd03258 ABC_MetN_methionine_tr 95.4 0.015 3.2E-07 47.3 3.2 26 172-197 30-55 (233)
417 PRK00454 engB GTP-binding prot 95.4 0.018 3.9E-07 45.2 3.6 28 169-196 20-47 (196)
418 cd04171 SelB SelB subfamily. 95.4 0.015 3.2E-07 44.0 2.9 21 175-195 2-22 (164)
419 PRK06305 DNA polymerase III su 95.4 0.031 6.8E-07 50.2 5.4 48 150-197 15-63 (451)
420 PRK14950 DNA polymerase III su 95.3 0.031 6.7E-07 52.0 5.5 49 150-198 14-63 (585)
421 TIGR01184 ntrCD nitrate transp 95.3 0.015 3.3E-07 47.3 3.2 25 173-197 11-35 (230)
422 cd03301 ABC_MalK_N The N-termi 95.3 0.016 3.4E-07 46.5 3.2 26 172-197 25-50 (213)
423 PRK13974 thymidylate kinase; P 95.3 0.064 1.4E-06 43.1 6.7 53 174-226 4-59 (212)
424 cd03219 ABC_Mj1267_LivG_branch 95.3 0.014 3E-07 47.6 2.9 26 172-197 25-50 (236)
425 TIGR02770 nickel_nikD nickel i 95.3 0.015 3.2E-07 47.3 3.1 27 172-198 11-37 (230)
426 PRK07471 DNA polymerase III su 95.3 0.039 8.4E-07 48.2 5.8 48 150-197 17-65 (365)
427 cd01858 NGP_1 NGP-1. Autoanti 95.3 0.03 6.4E-07 42.6 4.6 26 173-198 102-127 (157)
428 TIGR01243 CDC48 AAA family ATP 95.3 0.025 5.5E-07 54.0 5.0 48 151-198 177-237 (733)
429 PRK14489 putative bifunctional 95.3 0.035 7.6E-07 48.5 5.5 43 157-199 186-231 (366)
430 PF10443 RNA12: RNA12 protein; 95.3 0.026 5.6E-07 49.7 4.6 68 157-230 1-72 (431)
431 TIGR00678 holB DNA polymerase 95.3 0.13 2.7E-06 40.4 8.2 36 163-198 3-39 (188)
432 COG3842 PotA ABC-type spermidi 95.3 0.015 3.1E-07 50.3 3.0 27 173-199 31-57 (352)
433 cd04103 Centaurin_gamma Centau 95.3 0.014 3.1E-07 44.5 2.7 20 176-195 3-22 (158)
434 PRK13231 nitrogenase reductase 95.3 0.015 3.3E-07 48.3 3.1 26 174-199 3-28 (264)
435 cd04162 Arl9_Arfrp2_like Arl9/ 95.3 0.014 3E-07 44.8 2.6 21 176-196 2-22 (164)
436 cd03218 ABC_YhbG The ABC trans 95.3 0.016 3.5E-07 47.1 3.2 26 172-197 25-50 (232)
437 PRK11124 artP arginine transpo 95.3 0.016 3.5E-07 47.4 3.2 27 172-198 27-53 (242)
438 cd03273 ABC_SMC2_euk Eukaryoti 95.3 0.017 3.8E-07 47.6 3.4 25 172-196 24-48 (251)
439 cd04115 Rab33B_Rab33A Rab33B/R 95.3 0.016 3.5E-07 44.5 3.0 24 174-197 3-26 (170)
440 PF00308 Bac_DnaA: Bacterial d 95.3 0.03 6.5E-07 45.3 4.6 40 172-211 33-72 (219)
441 TIGR01978 sufC FeS assembly AT 95.3 0.016 3.5E-07 47.4 3.1 25 172-196 25-49 (243)
442 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.3 0.016 3.4E-07 44.3 2.8 23 175-197 4-26 (166)
443 COG1875 NYN ribonuclease and A 95.3 0.024 5.3E-07 48.7 4.1 39 154-192 226-264 (436)
444 cd03232 ABC_PDR_domain2 The pl 95.3 0.017 3.7E-07 45.6 3.1 25 172-196 32-56 (192)
445 PRK13540 cytochrome c biogenes 95.3 0.017 3.8E-07 45.8 3.2 27 172-198 26-52 (200)
446 PRK10908 cell division protein 95.3 0.017 3.7E-07 46.6 3.2 26 172-197 27-52 (222)
447 PRK09183 transposase/IS protei 95.3 0.016 3.6E-07 48.1 3.1 25 174-198 103-127 (259)
448 PRK06851 hypothetical protein; 95.3 0.044 9.6E-07 47.7 5.8 43 170-213 27-69 (367)
449 cd03268 ABC_BcrA_bacitracin_re 95.3 0.017 3.8E-07 46.1 3.2 26 172-197 25-50 (208)
450 cd03262 ABC_HisP_GlnQ_permease 95.3 0.017 3.7E-07 46.2 3.2 26 172-197 25-50 (213)
451 PRK04220 2-phosphoglycerate ki 95.2 0.032 6.9E-07 47.1 4.8 35 164-198 82-117 (301)
452 cd04146 RERG_RasL11_like RERG/ 95.2 0.017 3.7E-07 44.1 3.0 20 176-195 2-21 (165)
453 TIGR01281 DPOR_bchL light-inde 95.2 0.015 3.3E-07 48.3 2.9 23 175-197 2-24 (268)
454 PRK14953 DNA polymerase III su 95.2 0.036 7.8E-07 50.3 5.5 48 150-197 14-62 (486)
455 cd03295 ABC_OpuCA_Osmoprotecti 95.2 0.017 3.7E-07 47.3 3.2 26 172-197 26-51 (242)
456 PRK07933 thymidylate kinase; V 95.2 0.057 1.2E-06 43.5 6.1 26 175-200 2-27 (213)
457 PRK13539 cytochrome c biogenes 95.2 0.018 3.9E-07 46.0 3.2 26 172-197 27-52 (207)
458 PRK09519 recA DNA recombinatio 95.2 0.081 1.8E-06 50.4 7.9 54 173-233 60-113 (790)
459 cd03246 ABCC_Protease_Secretio 95.2 0.019 4.1E-07 44.5 3.2 26 172-197 27-52 (173)
460 TIGR01189 ccmA heme ABC export 95.2 0.018 4E-07 45.6 3.2 26 172-197 25-50 (198)
461 cd04101 RabL4 RabL4 (Rab-like4 95.2 0.013 2.9E-07 44.4 2.3 21 176-196 3-23 (164)
462 cd03278 ABC_SMC_barmotin Barmo 95.2 0.017 3.7E-07 45.9 3.0 22 174-195 23-44 (197)
463 PHA02575 1 deoxynucleoside mon 95.2 0.017 3.7E-07 46.5 3.0 21 175-195 2-22 (227)
464 COG1484 DnaC DNA replication p 95.2 0.06 1.3E-06 44.6 6.3 39 172-212 104-142 (254)
465 PRK11247 ssuB aliphatic sulfon 95.2 0.018 3.8E-07 47.8 3.2 26 172-197 37-62 (257)
466 cd03266 ABC_NatA_sodium_export 95.2 0.018 3.9E-07 46.3 3.1 26 172-197 30-55 (218)
467 PHA02244 ATPase-like protein 95.2 0.044 9.6E-07 47.6 5.6 37 160-198 108-144 (383)
468 PRK14088 dnaA chromosomal repl 95.2 0.049 1.1E-06 48.8 6.1 39 173-212 130-169 (440)
469 PRK07952 DNA replication prote 95.2 0.064 1.4E-06 44.1 6.4 51 160-212 84-136 (244)
470 TIGR02324 CP_lyasePhnL phospho 95.2 0.018 3.9E-07 46.5 3.1 27 172-198 33-59 (224)
471 PRK14242 phosphate transporter 95.2 0.018 3.9E-07 47.5 3.2 25 172-196 31-55 (253)
472 cd04161 Arl2l1_Arl13_like Arl2 95.2 0.015 3.3E-07 44.6 2.6 21 176-196 2-22 (167)
473 cd02034 CooC The accessory pro 95.2 0.021 4.6E-07 41.3 3.1 23 176-198 2-24 (116)
474 cd03223 ABCD_peroxisomal_ALDP 95.2 0.019 4.2E-07 44.2 3.1 27 172-198 26-52 (166)
475 PRK13973 thymidylate kinase; P 95.2 0.084 1.8E-06 42.4 7.0 51 174-226 4-54 (213)
476 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.019 4E-07 43.2 2.9 27 172-198 25-51 (144)
477 COG0703 AroK Shikimate kinase 95.2 0.024 5.1E-07 43.8 3.5 25 175-199 4-28 (172)
478 PRK08116 hypothetical protein; 95.2 0.026 5.7E-07 47.1 4.1 37 174-212 115-151 (268)
479 cd04145 M_R_Ras_like M-Ras/R-R 95.2 0.017 3.6E-07 43.8 2.7 23 175-197 4-26 (164)
480 cd01866 Rab2 Rab2 subfamily. 95.2 0.018 3.8E-07 44.2 2.9 24 174-197 5-28 (168)
481 COG4778 PhnL ABC-type phosphon 95.2 0.034 7.3E-07 42.9 4.2 34 173-209 37-70 (235)
482 cd04150 Arf1_5_like Arf1-Arf5- 95.1 0.018 3.8E-07 43.9 2.8 20 176-195 3-22 (159)
483 cd03214 ABC_Iron-Siderophores_ 95.1 0.02 4.4E-07 44.7 3.2 26 172-197 24-49 (180)
484 cd03230 ABC_DR_subfamily_A Thi 95.1 0.02 4.4E-07 44.3 3.2 26 172-197 25-50 (173)
485 PRK09544 znuC high-affinity zi 95.1 0.019 4.2E-07 47.4 3.2 26 172-197 29-54 (251)
486 COG1223 Predicted ATPase (AAA+ 95.1 0.032 7E-07 45.9 4.3 49 151-199 120-177 (368)
487 PRK05416 glmZ(sRNA)-inactivati 95.1 0.019 4.1E-07 48.4 3.1 23 172-194 5-27 (288)
488 PF11868 DUF3388: Protein of u 95.1 0.019 4.1E-07 43.4 2.7 46 160-214 37-88 (192)
489 PRK06526 transposase; Provisio 95.1 0.02 4.3E-07 47.4 3.2 27 172-198 97-123 (254)
490 cd04117 Rab15 Rab15 subfamily. 95.1 0.018 4E-07 43.8 2.8 22 175-196 2-23 (161)
491 cd03216 ABC_Carb_Monos_I This 95.1 0.021 4.6E-07 43.8 3.2 26 172-197 25-50 (163)
492 PRK14247 phosphate ABC transpo 95.1 0.019 4.2E-07 47.2 3.1 26 172-197 28-53 (250)
493 TIGR03598 GTPase_YsxC ribosome 95.1 0.026 5.5E-07 43.9 3.7 28 170-197 15-42 (179)
494 cd03252 ABCC_Hemolysin The ABC 95.1 0.02 4.2E-07 46.8 3.1 26 172-197 27-52 (237)
495 PRK14245 phosphate ABC transpo 95.1 0.02 4.3E-07 47.2 3.2 24 172-195 28-51 (250)
496 cd00544 CobU Adenosylcobinamid 95.1 0.096 2.1E-06 40.5 6.8 43 176-224 2-44 (169)
497 cd01897 NOG NOG1 is a nucleola 95.1 0.019 4E-07 43.8 2.8 23 175-197 2-24 (168)
498 PRK14241 phosphate transporter 95.1 0.02 4.3E-07 47.4 3.2 26 172-197 29-54 (258)
499 TIGR00972 3a0107s01c2 phosphat 95.1 0.02 4.3E-07 47.1 3.2 26 172-197 26-51 (247)
500 COG1123 ATPase components of v 95.1 0.018 3.9E-07 52.2 3.0 26 172-197 316-341 (539)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=2.6e-26 Score=216.09 Aligned_cols=215 Identities=27% Similarity=0.425 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------------hcc
Q 036637 34 FENLKTELEKLKDDGASMQHGVDEGRRKGEEIEKNVEKWLASVNNIITEAEKFTGDADKA-----------------NKR 96 (250)
Q Consensus 34 ~~~l~~~l~~L~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~-----------------~~~ 96 (250)
+......+..|+..|..+++++.+++..+ .....+..|...++++.|++||+++.+... ...
T Consensus 23 ~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~ 101 (889)
T KOG4658|consen 23 LDGKDNYILELKENLKALQSALEDLDAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRL 101 (889)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHH
Confidence 34445578888888888889999998875 457899999999999999999999875311 122
Q ss_pred cccccC-cChhHHHHHHHHHHHHHHHHHHHHHcCCCCccccc-cccccccccCCCCcCCCcChHHHHHHHHHHhcCCCce
Q 036637 97 CFMGLC-PNLKTRHRFSKEAVRQQKAIVELGEAGRFDRLSYR-KALEDIRLISNKDYEAFESRSSTLNNVLRALQDPDVN 174 (250)
Q Consensus 97 ~~~~~~-~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~ 174 (250)
|+.+++ .++...+.+++++..+...++.+.....|..+... .+...+..++..+... +|.+..++++++.|.+++..
T Consensus 102 c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~ 180 (889)
T KOG4658|consen 102 CLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVG 180 (889)
T ss_pred hhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCC
Confidence 333333 35667778899999999999999777777665542 2222333333333333 99999999999999988889
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCC---CCCHHHHHHHHHHHhcC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG-RDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIFF---EETESGRARSLYNRLKG 250 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~-v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~~---~~~~~~~~~~l~~~L~~ 250 (250)
+++|+||||+||||||++|||+.. ++++||.++||+||+.|+..+++.+|+..++.... ..+..+.+..|.+.|++
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~ 260 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEG 260 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhcc
Confidence 999999999999999999999998 99999999999999999999999999999988433 33457888899998864
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.68 E-value=2.7e-16 Score=132.36 Aligned_cols=94 Identities=33% Similarity=0.442 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCC--
Q 036637 157 RSSTLNNVLRALQD--PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIF-- 232 (250)
Q Consensus 157 r~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~-- 232 (250)
|+.++++|.++|.+ ++.++|+|+||||+||||||..+|++..++++|+.++|+.++..++...++..|+.+++.+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 68899999999997 78999999999999999999999999778899999999999999999999999999998874
Q ss_pred --CCCCHHHHHHHHHHHhcC
Q 036637 233 --FEETESGRARSLYNRLKG 250 (250)
Q Consensus 233 --~~~~~~~~~~~l~~~L~~ 250 (250)
...+..+....|++.|++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~ 100 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD 100 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC
T ss_pred cccccccccccccchhhhcc
Confidence 345777888899998864
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.96 E-value=1.3e-09 Score=107.69 Aligned_cols=60 Identities=32% Similarity=0.640 Sum_probs=51.7
Q ss_pred CCcCCCcChHHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEE
Q 036637 149 KDYEAFESRSSTLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVE 210 (250)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~ 210 (250)
.+..+++|++..++++..+|. .++.++|+||||||+||||||+.+|+... .+|+..+|+.
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~ 242 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFID 242 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEee
Confidence 356679999999999998876 56899999999999999999999999765 6799887763
No 4
>PTZ00202 tuzin; Provisional
Probab=98.67 E-value=4.1e-07 Score=79.37 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=68.3
Q ss_pred CCCcCCCcChHHHHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 036637 148 NKDYEAFESRSSTLNNVLRALQD---PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEI 224 (250)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i 224 (250)
|.+...|+||+.+...|...|.+ ..+.++.|+|++|+|||||++.+..... ..+++.-+. +..++++.|
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHH
Confidence 44677899999999999888762 2456889999999999999999996553 123333333 779999999
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHh
Q 036637 225 ADKLGLIFFEETESGRARSLYNRL 248 (250)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~l~~~L 248 (250)
+.+||.+.. ....++.+.|.+.|
T Consensus 330 L~ALGV~p~-~~k~dLLrqIqeaL 352 (550)
T PTZ00202 330 VKALGVPNV-EACGDLLDFISEAC 352 (550)
T ss_pred HHHcCCCCc-ccHHHHHHHHHHHH
Confidence 999998433 23356667776665
No 5
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.67 E-value=3.8e-08 Score=80.89 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=49.8
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCC--CCHHHHHHHH
Q 036637 164 VLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHI--PDIRKIQGEI 224 (250)
Q Consensus 164 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~--~~~~~l~~~i 224 (250)
.++.+.. ..-..++|+|.+|+|||||++.+|++.... +|++++|+++++. +++.++++.|
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 3444432 245578999999999999999999998765 8999999998766 7999999999
No 6
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.61 E-value=5.8e-08 Score=83.73 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=50.7
Q ss_pred HHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC--CHHHHHHHHH
Q 036637 163 NVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP--DIRKIQGEIA 225 (250)
Q Consensus 163 ~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~--~~~~l~~~i~ 225 (250)
++++++.- ..-.-..|+|++|+|||||++.||++.... +||+++||.+++.+ .+.+++++|.
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 34554441 233456899999999999999999999875 89999999999888 8899999986
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.61 E-value=7.4e-07 Score=78.48 Aligned_cols=99 Identities=21% Similarity=0.096 Sum_probs=72.2
Q ss_pred cCCCcChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 036637 151 YEAFESRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
+..++||+.+.++|...|. +.....+-|+|++|+||||+++.++++.......-..+++......+...++..|++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568999999999988874 334556789999999999999999998764332234566776777788899999999
Q ss_pred HhCC-CC--CCCCHHHHHHHHHHHhc
Q 036637 227 KLGL-IF--FEETESGRARSLYNRLK 249 (250)
Q Consensus 227 ~l~~-~~--~~~~~~~~~~~l~~~L~ 249 (250)
+++. +. ...+..+..+.+.+.|+
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9965 22 22344555666666553
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.49 E-value=1.8e-06 Score=75.15 Aligned_cols=98 Identities=23% Similarity=0.311 Sum_probs=69.5
Q ss_pred cCCCcChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHhcCC-CCC--C-eEEEEEcCCCCCHHHHHH
Q 036637 151 YEAFESRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRD-QFF--D-QVIFVEVPHIPDIRKIQG 222 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~-~~F--d-~~~wv~vs~~~~~~~l~~ 222 (250)
++.++||+.+++.|..+|. +.....+-|+|++|+|||++++.+++..... ... . ..+|+......+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 4478999999999999886 3445678999999999999999999875321 111 1 356777777778889999
Q ss_pred HHHHHh---CCCCC--CCCHHHHHHHHHHHh
Q 036637 223 EIADKL---GLIFF--EETESGRARSLYNRL 248 (250)
Q Consensus 223 ~i~~~l---~~~~~--~~~~~~~~~~l~~~L 248 (250)
.|++++ +.+.. +.+..+....+.++|
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 124 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKEL 124 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 999998 44322 223344445555544
No 9
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.45 E-value=1.8e-07 Score=73.32 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=43.2
Q ss_pred CcChHHHHHHHHHHhc---CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCC-----CCHHHHHHHHH
Q 036637 154 FESRSSTLNNVLRALQ---DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHI-----PDIRKIQGEIA 225 (250)
Q Consensus 154 ~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~-----~~~~~l~~~i~ 225 (250)
|+||+.+.+++...|. +...+.+.|+|.+|+|||+|++.++........+ .+.+..... .+...++++|+
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQLI 79 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHHH
Confidence 7899999999999993 5567899999999999999999999888755323 222222222 12366666666
Q ss_pred HHh
Q 036637 226 DKL 228 (250)
Q Consensus 226 ~~l 228 (250)
.++
T Consensus 80 ~~~ 82 (185)
T PF13191_consen 80 DQL 82 (185)
T ss_dssp ---
T ss_pred HHh
Confidence 664
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.43 E-value=3.2e-06 Score=70.39 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=52.9
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIFFEETESGRARSLYNR 247 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~ 247 (250)
..+.+++.|+|.+|+|||||++.+++..... .+ ..+|+ +....+..+++..|+..+|.+....+.......|...
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDF 114 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Confidence 4566789999999999999999999887532 11 22333 3334678899999999999876554444444455443
No 11
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.40 E-value=1.1e-06 Score=64.87 Aligned_cols=78 Identities=31% Similarity=0.389 Sum_probs=57.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCC---CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRD---QFFDQVIFVEVPHIPDIRKIQGEIADKLGLIFFE-ETESGRARSLYNR 247 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~---~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 247 (250)
+-+.+.|+|.+|+|||++++.+.++..-. ..-...+|+.++...+...+...|+.+++.+... .+..+..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35678999999999999999999876321 0023567999998889999999999999988776 5667777777776
Q ss_pred hc
Q 036637 248 LK 249 (250)
Q Consensus 248 L~ 249 (250)
+.
T Consensus 83 l~ 84 (131)
T PF13401_consen 83 LD 84 (131)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 12
>PRK08118 topology modulation protein; Reviewed
Probab=98.36 E-value=2.6e-07 Score=71.62 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=38.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCC-CCCCeEE----EEEcCCCCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRD-QFFDQVI----FVEVPHIPDIRKIQGEIADK 227 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~-~~Fd~~~----wv~vs~~~~~~~l~~~i~~~ 227 (250)
..|.|+|++|+||||||+.+++..... -+||..+ |..+++. ....+++.++.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~~~ 59 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNELVKE 59 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHHhcC
Confidence 358999999999999999999998765 4688888 5555442 444455555543
No 13
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.25 E-value=3.3e-06 Score=73.36 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=47.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCC--CCHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHI--PDIRKIQGEIAD 226 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~--~~~~~l~~~i~~ 226 (250)
.-..++|+|.+|+|||||++.+++..... +|+..+||.+++. .++.++++.|+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg 222 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKG 222 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhc
Confidence 44578999999999999999999998764 8999999999965 799999999943
No 14
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.09 E-value=1.2e-05 Score=70.85 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 036637 152 EAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQG 222 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~ 222 (250)
..+++.+...+.++..|.. .+.|.++|++|+|||++|+.+++.......|+.+.||++++.++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 3466778888999888874 34667799999999999999999887666789999999999888777664
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.06 E-value=4.3e-06 Score=67.64 Aligned_cols=60 Identities=23% Similarity=0.394 Sum_probs=43.6
Q ss_pred CcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC
Q 036637 154 FESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP 215 (250)
Q Consensus 154 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~ 215 (250)
|+||+.+++.|.+++..+....+.|+|+.|+|||+|++.+.+..+.. .+ ..+|+......
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~ 60 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEES 60 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBS
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccch
Confidence 68999999999998887778899999999999999999999988432 22 34455444443
No 16
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.06 E-value=2.3e-05 Score=58.21 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=47.2
Q ss_pred cChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCH
Q 036637 155 ESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDI 217 (250)
Q Consensus 155 ~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~ 217 (250)
.|++..+..+...+..+..+.+.|+|.+|+|||||++.+++.... .-..++++..+.....
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEG 61 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhh
Confidence 367778888888887777788999999999999999999998752 1235677776655433
No 17
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0002 Score=62.36 Aligned_cols=97 Identities=21% Similarity=0.315 Sum_probs=75.8
Q ss_pred CCcChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 036637 153 AFESRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKL 228 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l 228 (250)
.+.+|+.+.+++...|. +..+.-+-|.|..|.|||+.++.|.+..+....=...++|..-....+-+++..|+.++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 48899999999988876 33444488999999999999999998887542211278898889999999999999999
Q ss_pred C-CCCCCCCHHHHHHHHHHHhc
Q 036637 229 G-LIFFEETESGRARSLYNRLK 249 (250)
Q Consensus 229 ~-~~~~~~~~~~~~~~l~~~L~ 249 (250)
+ .|..+.+..+..+.+.+.+.
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHH
Confidence 5 34445666777777777653
No 18
>PRK07261 topology modulation protein; Provisional
Probab=97.83 E-value=5e-05 Score=59.06 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=36.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCCC-CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRDQ-FFDQVIFVEVPHIPDIRKIQGEIADKL 228 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~~-~Fd~~~wv~vs~~~~~~~l~~~i~~~l 228 (250)
.|.|+|++|+||||||+.+........ +.|...|-.-....+..++...+..-+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 489999999999999999987765432 467777754333344455555443333
No 19
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.80 E-value=0.00033 Score=52.82 Aligned_cols=110 Identities=12% Similarity=0.148 Sum_probs=74.7
Q ss_pred chhH-HHHHHHHHhhhhhchhhhhhhHccchhhHHHHHHHHHHHHHhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Q 036637 2 VESI-VTVVLEVAKCLGRPTERQLSFVRNYRSNFENLKTELEKLKDDGASMQHGVDEGRRKGEEIEKNVEKWLASVNNII 80 (250)
Q Consensus 2 ae~~-~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~L~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~l~~~~ 80 (250)
||.+ +++++.+++.|...+........ ..+.-++.|...++.+..++.+.+..+...|...+.-+.++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~-------~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSL-------SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 3444 34555555555555444444433 345566667777777777777777665555666577799999999
Q ss_pred HHHHHHhhhhhhhhcccccccCcChhHHHHHHHHHHHHHHHHHHH
Q 036637 81 TEAEKFTGDADKANKRCFMGLCPNLKTRHRFSKEAVRQQKAIVEL 125 (250)
Q Consensus 81 ~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l 125 (250)
.++++++.++.... +++++..++.+++|+++.+.+...
T Consensus 76 ~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 76 EKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 99999999986543 345666777888888888887766
No 20
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.75 E-value=7.3e-05 Score=59.99 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=35.3
Q ss_pred CcCCCcChHHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 150 DYEAFESRSSTLNNVLRALQ-----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
....++|.+.-+..+.-++. ++.+.-+-.||++|+||||||.-|.+....
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~ 76 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV 76 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC
Confidence 56789998877766544333 356778899999999999999999998874
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.73 E-value=9.4e-05 Score=65.65 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=39.2
Q ss_pred CcCCCcChHHHHHH---HHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNN---VLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~---l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..+.. +.+++.......+-++|++|+||||||+.+.+...
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567888776555 77777777777888999999999999999998764
No 22
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.71 E-value=0.0001 Score=62.81 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=42.1
Q ss_pred HHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 036637 166 RALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADK 227 (250)
Q Consensus 166 ~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~ 227 (250)
+++..+.+..+.+||++|+||||||+.+.+..+... ..||..|.+-.-.+-.+.|+++
T Consensus 155 s~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 155 SLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 333456778889999999999999999998887543 6678888665444444555544
No 23
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.70 E-value=3.8e-05 Score=55.83 Aligned_cols=24 Identities=50% Similarity=0.671 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998764
No 24
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.70 E-value=0.00061 Score=57.11 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=56.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCC----eEEEEEcCCCCCHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFD----QVIFVEVPHIPDIRKIQGEIADKLGLIFFEE-TESGRARSLYN 246 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd----~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~l~~ 246 (250)
...-+.|||-.|.|||++++..+...-....=+ .++.|.....++...+...|+.+++.|.... +......++..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 345678999999999999999987664321111 4667788899999999999999999998653 33343434444
Q ss_pred Hh
Q 036637 247 RL 248 (250)
Q Consensus 247 ~L 248 (250)
.|
T Consensus 140 ll 141 (302)
T PF05621_consen 140 LL 141 (302)
T ss_pred HH
Confidence 43
No 25
>PF05729 NACHT: NACHT domain
Probab=97.65 E-value=0.0001 Score=56.34 Aligned_cols=55 Identities=27% Similarity=0.421 Sum_probs=38.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCC----CCeEEEEEcCCCCCHH---HHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQF----FDQVIFVEVPHIPDIR---KIQGEIADKL 228 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~----Fd~~~wv~vs~~~~~~---~l~~~i~~~l 228 (250)
+++.|+|.+|+||||+++.++........ |...+|...+...... .+...|..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 62 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQL 62 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhh
Confidence 57899999999999999999988866543 4567777776544332 3444444443
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.64 E-value=7.1e-05 Score=63.61 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=40.0
Q ss_pred CCCcChHHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 152 EAFESRSSTLNNVLRALQ-----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..|+|++..++.|..++. ...+..+-++|++|+|||+||+.+.+....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999888876 234566789999999999999999987753
No 27
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.60 E-value=0.00062 Score=58.41 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=62.8
Q ss_pred CCCcChHHHHHHHHHHhcCCC---ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 036637 152 EAFESRSSTLNNVLRALQDPD---VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKL 228 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~~~---~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l 228 (250)
+.+.+|+.+...+..++.+.+ +..+-|.|..|.|||.+++++++..... .+|+++-..|+..-++..|+.++
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 467889999999999887554 3445688999999999999999988543 68999999999999999999999
Q ss_pred C
Q 036637 229 G 229 (250)
Q Consensus 229 ~ 229 (250)
+
T Consensus 81 ~ 81 (438)
T KOG2543|consen 81 Q 81 (438)
T ss_pred c
Confidence 6
No 28
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0022 Score=59.26 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=50.4
Q ss_pred cCCCcChHHHHHHHHHHhc------CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 036637 151 YEAFESRSSTLNNVLRALQ------DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKI 220 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l 220 (250)
.++.+|+++-++.+++++- +-+-.+++.+|++|+|||++++.|..-.. ++.|. ++|+.-.|+.+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn-RkFfR----fSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN-RKFFR----FSVGGMTDVAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC-CceEE----EeccccccHHhh
Confidence 4567899999999999987 34778999999999999999999998775 22332 556665555554
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.56 E-value=0.00011 Score=63.25 Aligned_cols=50 Identities=28% Similarity=0.436 Sum_probs=41.1
Q ss_pred CcCCCcChHHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 150 DYEAFESRSSTLNNVLRALQ-----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
....++|++..++.+..++. ......+-++|++|+||||||+.+.+....
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 55679999999888877665 334667889999999999999999988753
No 30
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.53 E-value=0.0016 Score=61.91 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=65.7
Q ss_pred cCCCcChHHHHHHHHHHhc----CCC-ceEEEEEccCCCCHHHHHHHHHHHhcCC---CCCC--eEEEEEcCCCCCHHHH
Q 036637 151 YEAFESRSSTLNNVLRALQ----DPD-VNMVGIYGMGGIGKTTLAKEVAIQFGRD---QFFD--QVIFVEVPHIPDIRKI 220 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~v~---~~Fd--~~~wv~vs~~~~~~~l 220 (250)
++.+.||+.+.+.|..+|. ..+ ..++-|.|.+|.|||+.++.|.+..+.. .... ..++|....-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4568899999999988877 233 3577899999999999999998776321 1222 2455655555678888
Q ss_pred HHHHHHHhCC-CC-CCCCHHHHHHHHHHH
Q 036637 221 QGEIADKLGL-IF-FEETESGRARSLYNR 247 (250)
Q Consensus 221 ~~~i~~~l~~-~~-~~~~~~~~~~~l~~~ 247 (250)
+..|+.+|.. .. ...+..+..+.+...
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQ 862 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence 8889888832 22 233444455555443
No 31
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.52 E-value=0.00017 Score=62.00 Aligned_cols=79 Identities=11% Similarity=0.157 Sum_probs=55.5
Q ss_pred CCcChHHHHHHHHHHhcC------CCceEEEEEccCCCCHHHHHHHHHHHhcCC-----CCCCeEEE----EEcCCCC--
Q 036637 153 AFESRSSTLNNVLRALQD------PDVNMVGIYGMGGIGKTTLAKEVAIQFGRD-----QFFDQVIF----VEVPHIP-- 215 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~-----~~Fd~~~w----v~vs~~~-- 215 (250)
.++|.++.++++++++.+ ...+++.++|++|+||||||+.+.+....- +.|=..-| ..+-..|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~ 131 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLH 131 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcc
Confidence 688999999999999872 346889999999999999999999888642 23334444 2222222
Q ss_pred -CHHHHHHHHHHHhCCC
Q 036637 216 -DIRKIQGEIADKLGLI 231 (250)
Q Consensus 216 -~~~~l~~~i~~~l~~~ 231 (250)
-+.+.-..+.+.++.+
T Consensus 132 l~p~~~r~~~~~~~~~~ 148 (361)
T smart00763 132 LFPDELREDLEDEYGIP 148 (361)
T ss_pred cCCHHHHHHHHHHhCCC
Confidence 3445555566677654
No 32
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00037 Score=60.16 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=35.3
Q ss_pred CcCCCcChHHHH---HHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTL---NNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+.-+ .-|-.++...++.-.-.||++|+||||||+.|-....
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC
Confidence 344566654322 3344555567888888999999999999999997665
No 33
>PRK06696 uridine kinase; Validated
Probab=97.42 E-value=0.00028 Score=57.23 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhc---CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 157 RSSTLNNVLRALQ---DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 157 r~~~~~~l~~~L~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|..-+++|.+.+. ...+.+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555667777665 45788999999999999999999998764
No 34
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.39 E-value=0.00058 Score=55.25 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 036637 157 RSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH 213 (250)
Q Consensus 157 r~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~ 213 (250)
....++.+.+++.......+-++|..|+||||||+.+++.... .....++++++.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHH
Confidence 4556777777766667788899999999999999999987642 233455665543
No 35
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00024 Score=53.80 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
..-|.|.||+|+||||+++.+.+..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 3468999999999999999999888754
No 36
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.37 E-value=0.00032 Score=65.29 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=48.4
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCC---eEEEEEcC
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFD---QVIFVEVP 212 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd---~~~wv~vs 212 (250)
..+.++|++.....+++.+.......+.|+|.+|+||||||+.+++.......+. ..-|+.+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 3456789988888888888767777899999999999999999998875444432 34566654
No 37
>PRK07667 uridine kinase; Provisional
Probab=97.29 E-value=0.00044 Score=54.85 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=30.0
Q ss_pred HHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 161 LNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 161 ~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.+++.+. ..+..+|+|.|.+|+||||+++.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566665 34567999999999999999999998764
No 38
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.27 E-value=0.00042 Score=62.98 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=41.1
Q ss_pred CCcChHHHHHHHHHHhc------CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 153 AFESRSSTLNNVLRALQ------DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.++|.++.++++++.|. +....++.++|++|+||||||+.+.+-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 57899999999999993 56678999999999999999999998775
No 39
>PF13173 AAA_14: AAA domain
Probab=97.27 E-value=0.00047 Score=50.80 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=32.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP 215 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~ 215 (250)
.+++.|.|+.|+|||||+++++.+.. ....++|++.....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH
Confidence 46889999999999999999998875 34567888776553
No 40
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00046 Score=63.60 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=41.2
Q ss_pred cCCCcChHHHHHHHHHHhc----CC--CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQ----DP--DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+.+|.+.-+++|+++|- .+ .-.++++||++|+|||+|++.|.+-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 4567899999999999987 22 456999999999999999999998775
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.26 E-value=0.0018 Score=55.22 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=41.5
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|++..++.+..++.......+-++|..|+||||+++.+.+...
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3456789999999999988776666679999999999999999988764
No 42
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.25 E-value=0.00099 Score=52.95 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=40.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHHHhCCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP-HIPDIRKIQGEIADKLGLIF 232 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs-~~~~~~~l~~~i~~~l~~~~ 232 (250)
++||.++|+.|+||||.+-++......+ =..+..++.. ......+=++..++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 5799999999999999887777777644 2345556543 22344555788888888774
No 43
>PRK06547 hypothetical protein; Provisional
Probab=97.24 E-value=0.00068 Score=52.72 Aligned_cols=37 Identities=35% Similarity=0.295 Sum_probs=29.8
Q ss_pred HHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 163 NVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 163 ~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.+...+......+|+|.|.+|+||||+++.+.+...+
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444455677889999999999999999999887543
No 44
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.24 E-value=0.00048 Score=59.20 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=41.0
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|++..++.+..++..+....+-++|..|+||||+|+.+.+...
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456789999999999988876655678999999999999999987764
No 45
>PLN03025 replication factor C subunit; Provisional
Probab=97.23 E-value=0.0015 Score=56.06 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=39.3
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|..++......-+-++|.+|+||||+|+.+.+...
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456788888888888877766555567999999999999999988763
No 46
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.22 E-value=0.0004 Score=55.70 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=25.0
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....+|+|+|.+|+|||||++.++...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999999876
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=97.21 E-value=0.00083 Score=60.88 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=41.1
Q ss_pred CcCCCcChHHHHHHHHHHhcCC----CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDP----DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+|+... ..+.+-|+|++|+||||+|+.+.+...
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4556889999999998888632 267889999999999999999998874
No 48
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.20 E-value=0.00035 Score=51.03 Aligned_cols=22 Identities=55% Similarity=0.847 Sum_probs=20.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0043 Score=53.03 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=55.9
Q ss_pred CCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHhc----CCCCCCeEEEEE-cCCCCCHHHHHHHHH
Q 036637 152 EAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQFG----RDQFFDQVIFVE-VPHIPDIRKIQGEIA 225 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~----v~~~Fd~~~wv~-vs~~~~~~~l~~~i~ 225 (250)
..++|.+..++.+.+++..+. .+..-++|+.|+||||+|+.++.... ...|+|...|.. -+....+.++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 357788888999999887554 56778999999999999999988542 235778877776 3455666664 4455
Q ss_pred HHh
Q 036637 226 DKL 228 (250)
Q Consensus 226 ~~l 228 (250)
+.+
T Consensus 83 ~~~ 85 (313)
T PRK05564 83 EEV 85 (313)
T ss_pred HHH
Confidence 544
No 50
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.18 E-value=0.00035 Score=55.37 Aligned_cols=25 Identities=48% Similarity=0.716 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
||+|.|.+|+||||+|+.+..-...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999988864
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.00078 Score=55.71 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=42.3
Q ss_pred CcCCCcChHHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 150 DYEAFESRSSTLNNVLRALQ-----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
....++|.+.-+++|-=++. ++.+.-+-++|++|.||||||.-|.+...+.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 45678999887777665555 5678899999999999999999999998764
No 52
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.14 E-value=0.0024 Score=53.69 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=39.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCC-CCCCeEEEEEcCC-CCCHHHHHHHHHHHhCCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRD-QFFDQVIFVEVPH-IPDIRKIQGEIADKLGLIFF 233 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~-~~Fd~~~wv~vs~-~~~~~~l~~~i~~~l~~~~~ 233 (250)
..+++.++|..|+||||++..+......+ +.+ .+..|+... .....+-+..-...++.+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~ 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVK 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCcee
Confidence 46799999999999999999988766433 223 344454432 12233444555666777754
No 53
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.14 E-value=0.00068 Score=65.33 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=40.5
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...++||+.+.+.+++.|......-+.++|.+|+|||++|+.+.....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999865555557999999999999999987753
No 54
>PRK08233 hypothetical protein; Provisional
Probab=97.13 E-value=0.00047 Score=53.73 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999997764
No 55
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.13 E-value=0.005 Score=50.13 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=25.4
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
....+++|.|..|+|||||++.+..-...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999877653
No 56
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.12 E-value=0.00049 Score=55.16 Aligned_cols=27 Identities=41% Similarity=0.585 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+|+|+|.+|+|||||++.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999997654
No 57
>PHA00729 NTP-binding motif containing protein
Probab=97.10 E-value=0.00087 Score=54.12 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 162 NNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 162 ~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++++.+.+.+...|.|+|.+|+||||||..+.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445666667777789999999999999999998874
No 58
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.09 E-value=0.00093 Score=64.43 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=41.3
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+.++||+.++..+++.|......-+-++|.+|+||||+|+.+....
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999998886665566799999999999999998875
No 59
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.09 E-value=0.00089 Score=55.06 Aligned_cols=64 Identities=25% Similarity=0.232 Sum_probs=43.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEE-------EEEcCCCCCHHHH--HHHHHHHhCCCCCC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVI-------FVEVPHIPDIRKI--QGEIADKLGLIFFE 234 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~-------wv~vs~~~~~~~l--~~~i~~~l~~~~~~ 234 (250)
+.+.+|-++||+|+||||.++.++.+...++.=..++ =|..+-+.|+++- .+..++|.++..++
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 3577889999999999999999998887543211111 1122234567766 47888888877663
No 60
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00099 Score=50.53 Aligned_cols=45 Identities=33% Similarity=0.521 Sum_probs=37.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIF 232 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~ 232 (250)
+|.|.|.+|+||||+|+.+.++.... -.+--.++++++...|++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------------~vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------------LVSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------------eeeccHHHHHHHHHcCCCH
Confidence 68999999999999999999998753 1234578889999988874
No 61
>PRK06762 hypothetical protein; Provisional
Probab=97.08 E-value=0.00059 Score=52.55 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998775
No 62
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.05 E-value=0.0011 Score=63.07 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=54.4
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc---CCCCC-CeEEEE-EcC-----CCC--CHH
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG---RDQFF-DQVIFV-EVP-----HIP--DIR 218 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~---v~~~F-d~~~wv-~vs-----~~~--~~~ 218 (250)
.+.++||+.+.+.+++.|......-+.++|.+|+|||++|+.+..... +...+ ++.+|. ..+ ..+ ..+
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e 260 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFE 260 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHH
Confidence 457899999999999988866555567999999999999999998763 22222 455554 221 111 445
Q ss_pred HHHHHHHHHh
Q 036637 219 KIQGEIADKL 228 (250)
Q Consensus 219 ~l~~~i~~~l 228 (250)
+-++.+++.+
T Consensus 261 ~~l~~i~~~~ 270 (731)
T TIGR02639 261 ERLKAVVSEI 270 (731)
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 63
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.04 E-value=0.001 Score=51.79 Aligned_cols=37 Identities=32% Similarity=0.543 Sum_probs=28.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEE
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFV 209 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv 209 (250)
....+|.++|+.|+||||+++.+++.... .+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEE
Confidence 35569999999999999999999988753 34444444
No 64
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.04 E-value=0.00068 Score=50.62 Aligned_cols=24 Identities=42% Similarity=0.654 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|-++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986654
No 65
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.99 E-value=0.00078 Score=43.95 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999884
No 66
>PRK03839 putative kinase; Provisional
Probab=96.98 E-value=0.00082 Score=52.52 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.|.|+|++|+||||+++.+.+....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988753
No 67
>PTZ00301 uridine kinase; Provisional
Probab=96.98 E-value=0.00082 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.654 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999887654
No 68
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.98 E-value=0.0013 Score=56.14 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=40.5
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+...+.+..++.... .+++-++|.+|+||||+|+.+++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 45678899999999999887554 5677789999999999999999875
No 69
>PRK04040 adenylate kinase; Provisional
Probab=96.95 E-value=0.00087 Score=52.91 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=33.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGL 230 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~ 230 (250)
..+|.|+|++|+||||+++.+...... .|.+ + +..+++..++...|+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~--~~~~---~------~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKE--DYKI---V------NFGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcc--CCeE---E------ecchHHHHHHHHcCC
Confidence 468999999999999999999887631 1222 2 335566677766665
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.95 E-value=0.0012 Score=62.44 Aligned_cols=49 Identities=33% Similarity=0.449 Sum_probs=38.0
Q ss_pred CcCCCcChHHHHH---HHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLN---NVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~---~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..+. .+.+.+..+....+-++|++|+||||||+.+++...
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456788877653 455666667777778999999999999999998764
No 71
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.92 E-value=0.0055 Score=54.59 Aligned_cols=60 Identities=25% Similarity=0.350 Sum_probs=41.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC--CHHHHHHHHHHHhCCCCC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP--DIRKIQGEIADKLGLIFF 233 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~--~~~~l~~~i~~~l~~~~~ 233 (250)
..+.+|.++|.+|+||||.+..+....... .+ .+..|+. .++ ...+-++.+..+++.+..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~-D~~R~aa~eQL~~la~~~gvp~~ 154 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAA-DTYRPAAYDQLKQLAEKIGVPFY 154 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecC-CCCCHHHHHHHHHHHHHcCCcEE
Confidence 357899999999999999999998777532 23 2333333 233 335557778888887643
No 72
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.91 E-value=0.00074 Score=53.64 Aligned_cols=23 Identities=48% Similarity=0.731 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+|+|.|..|+|||||++.+..-.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 73
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.90 E-value=0.0029 Score=47.12 Aligned_cols=43 Identities=35% Similarity=0.445 Sum_probs=32.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGE 223 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~ 223 (250)
|-++|.+|+|||+||+.+..... ....-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceee
Confidence 56899999999999999998873 13445677787888877643
No 74
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.90 E-value=0.0044 Score=51.85 Aligned_cols=102 Identities=10% Similarity=-0.004 Sum_probs=68.8
Q ss_pred hchhhhhhhHccc-hhhHHHHHHHHHHHHHhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 036637 18 RPTERQLSFVRNY-RSNFENLKTELEKLKDDGASMQHGVDEGRRKGEEIEKNVEKWLASVNNIITEAEKFTGDADKANKR 96 (250)
Q Consensus 18 ~~~~~~~~~l~~~-~~~~~~l~~~l~~L~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~~~ 96 (250)
..+.+.+..+.++ .+....++.+++-++.+++.++.||...-..+.........+..++...||++|.++|.+.....+
T Consensus 299 dFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~k~~P 378 (402)
T PF12061_consen 299 DFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACISKSVP 378 (402)
T ss_pred HHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhcCCCc
Confidence 3444445544443 355678899999999999999999998743323344559999999999999999999998655432
Q ss_pred cccccCcChhHHHHHHHHHHHHHHHHH
Q 036637 97 CFMGLCPNLKTRHRFSKEAVRQQKAIV 123 (250)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~i~~~~~~l~ 123 (250)
.+. ..++.+.+..+|.-++++++
T Consensus 379 ~Wc----l~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 379 HWC----LERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHhc
Confidence 211 02334445555555555543
No 75
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.90 E-value=0.0018 Score=62.65 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=40.5
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+.++||+.++..+++.|......-+-++|.+|+||||||+.+....
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999998886655566699999999999999988776
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0017 Score=58.48 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=39.7
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+.....|...+.++.+ +.+-++|++|+||||+|+.+.+...
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445688988888888887776665 5688999999999999999977653
No 77
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.88 E-value=0.0011 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+..+|.|+|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998665
No 78
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.87 E-value=0.0011 Score=48.60 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|-++|.+|+||||+|+.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56899999999999999999975
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0062 Score=55.75 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=39.5
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..+..|..++..+.+ +.+-++|+.|+||||+|+.+.+..
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445688999999999988876544 567899999999999999998754
No 80
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.85 E-value=0.0019 Score=56.34 Aligned_cols=49 Identities=31% Similarity=0.400 Sum_probs=39.0
Q ss_pred CcCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+.|++..++.|.+.+. . ..++-+.++|++|+|||+||+.+++...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 34568899999999888764 1 1245588999999999999999998765
No 81
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0013 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..++.|.|+.|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999999887
No 82
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0024 Score=55.73 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=40.6
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.+.+.+..+. .+.+-++|+.|+||||+|+.+.+...
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 44568899999999988887654 46778999999999999999987664
No 83
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0015 Score=59.25 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=40.3
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|..++..+.+ +.+-++|++|+||||+|+.+.+...
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999888888888876654 5679999999999999999887764
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.84 E-value=0.003 Score=52.48 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=31.6
Q ss_pred CCCcChHHHHHHHH---HHhc------------CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 152 EAFESRSSTLNNVL---RALQ------------DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 152 ~~~~gr~~~~~~l~---~~L~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..++|.+..++.+. .++. .+...-+-++|.+|+||||+|+.+.+..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678776655543 3321 1234567799999999999999998754
No 85
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.0059 Score=53.21 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=40.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHHHHHHHHHhCCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH-IPDIRKIQGEIADKLGLIFF 233 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~-~~~~~~l~~~i~~~l~~~~~ 233 (250)
.-+++.++|+.|+||||++..+......+.....+..++... .....+-++...+.++.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~ 198 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 198 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE
Confidence 357999999999999999999987753221123445554322 23455556666777777654
No 86
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.83 E-value=0.0072 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|+|.|..|+||||+|+.+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 87
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.82 E-value=0.0038 Score=49.90 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=35.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQ 221 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~ 221 (250)
-.++-|+|.+|+|||+++.++..... ..-..++|++... ++...+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHH
Confidence 57889999999999999999876654 2346788998875 5554444
No 88
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.81 E-value=0.0037 Score=50.88 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=40.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCC----CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQF----FDQVIFVEVPHIPDIRKIQGEIADKLG 229 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~----Fd~~~wv~vs~~~~~~~l~~~i~~~l~ 229 (250)
.-.++.|+|.+|+|||||+.++.-....... ...++|++...+++...+. ++++.++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~ 78 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFG 78 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhc
Confidence 3568899999999999999999755433221 3588999988887765543 3344443
No 89
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.80 E-value=0.0078 Score=52.26 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=52.0
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCe-EEEEEcCCCC-CHHHHHHHHHHHhCCCC
Q 036637 161 LNNVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQ-VIFVEVPHIP-DIRKIQGEIADKLGLIF 232 (250)
Q Consensus 161 ~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~-~~wv~vs~~~-~~~~l~~~i~~~l~~~~ 232 (250)
-.++++.+.- ..-.-+.|+|..|+|||||++.+.+..... +=+. ++|+.+.+.. .+.++++.+...+....
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 3457777762 222355999999999999999998877432 3344 5888888665 88999999988876654
No 90
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.0015 Score=52.21 Aligned_cols=28 Identities=50% Similarity=0.699 Sum_probs=25.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.+.+|+|-|.+|+||||+|+.+++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999988764
No 91
>PRK10536 hypothetical protein; Provisional
Probab=96.79 E-value=0.0043 Score=51.07 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=41.2
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEE
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVI 207 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~ 207 (250)
+...+.++......++.+|.+. ..+.+.|..|+|||+||..+..+.-..+.|+.++
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3445667777888888888654 4889999999999999999887643234455444
No 92
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.78 E-value=0.0031 Score=50.83 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=29.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIR 218 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~ 218 (250)
.|+|+|-||+||||++..+......++.|+.-+ |...+++|+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLv-VDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLV-VDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEE-EeCCCCCChH
Confidence 689999999999999998666555444344332 5555555543
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.78 E-value=0.003 Score=51.26 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....+.++|..|+|||+||+.+++..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445678899999999999999999875
No 94
>PRK06893 DNA replication initiation factor; Validated
Probab=96.78 E-value=0.0054 Score=49.98 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=29.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
.....+-++|.+|+|||+|++.+++....+ .....|++++
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 344568999999999999999999886432 2344666664
No 95
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.78 E-value=0.0011 Score=52.25 Aligned_cols=23 Identities=48% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 96
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.77 E-value=0.0014 Score=47.94 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=28.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH 213 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~ 213 (250)
...+.|+|.+|+||||+++.+........ ...+++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEE
Confidence 35789999999999999999998776432 2355555543
No 97
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.77 E-value=0.0026 Score=61.65 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=40.1
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+.++||+.++..+++.|......-+.++|.+|+|||++++.+....
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999998886655556689999999999999988775
No 98
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.77 E-value=0.0019 Score=56.92 Aligned_cols=48 Identities=33% Similarity=0.407 Sum_probs=38.5
Q ss_pred cCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+.|++..++++.+.+. . ..++-|-++|.+|+|||++|+.+++...
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 3467899999888888653 1 2456688999999999999999998765
No 99
>PRK00625 shikimate kinase; Provisional
Probab=96.75 E-value=0.0014 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.++||+|+||||+++.+-+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987754
No 100
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.75 E-value=0.0025 Score=52.10 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=30.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
+-.++|+|..|+|||||+..+..+.. ..|+++++++-.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~~ 50 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITPE 50 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEecC
Confidence 44568999999999999999997765 678888777543
No 101
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.74 E-value=0.0027 Score=53.52 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+.+|+|.|..|+||||+|+.+..-.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998775444
No 102
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.74 E-value=0.0058 Score=48.70 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
..+|+++|+.|+||||.++.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999997665
No 103
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.74 E-value=0.02 Score=50.05 Aligned_cols=74 Identities=24% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCC----CceEEEEEccCCCCHHH-HHHHHHHHhcCCCCCCeEEEEEcCCCC--CHHHHHHHHHHHhCC
Q 036637 158 SSTLNNVLRALQDP----DVNMVGIYGMGGIGKTT-LAKEVAIQFGRDQFFDQVIFVEVPHIP--DIRKIQGEIADKLGL 230 (250)
Q Consensus 158 ~~~~~~l~~~L~~~----~~~vi~I~G~gGvGKTt-La~~v~~~~~v~~~Fd~~~wv~vs~~~--~~~~l~~~i~~~l~~ 230 (250)
......+..++.++ +-++|.+||+.|+|||| ||+....-.-..+ =..+..++.. +| ...+=++.-++-+++
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtD-tYRIGA~EQLk~Ya~im~v 261 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTD-TYRIGAVEQLKTYADIMGV 261 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEec-cchhhHHHHHHHHHHHhCC
Confidence 34455555555544 48999999999999998 7766544441111 1345555553 33 333335556777777
Q ss_pred CCC
Q 036637 231 IFF 233 (250)
Q Consensus 231 ~~~ 233 (250)
|..
T Consensus 262 p~~ 264 (407)
T COG1419 262 PLE 264 (407)
T ss_pred ceE
Confidence 755
No 104
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.0077 Score=57.70 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=40.7
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVN-MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+.+...
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4457889999999999988866554 558999999999999999987764
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.73 E-value=0.0071 Score=58.97 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=48.5
Q ss_pred CCCcChHHHHHHHHHHhc-CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHHHhC
Q 036637 152 EAFESRSSTLNNVLRALQ-DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP-HIPDIRKIQGEIADKLG 229 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs-~~~~~~~l~~~i~~~l~ 229 (250)
..++-|. .|.+.|. ..+.+++.|+|++|.||||++.+.... ++.++|+++. .+-++..+...++..++
T Consensus 14 ~~~~~R~----rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 14 HNTVVRE----RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred cccCcch----HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 3455555 3444343 246789999999999999999997742 3369999997 44566777777777774
No 106
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.72 E-value=0.002 Score=51.59 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=27.6
Q ss_pred HHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 166 RALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 166 ~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.+...++.+|+++|..|+|||||...+....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999999998765
No 107
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.70 E-value=0.0016 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.++.|+|+.|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987654
No 108
>PRK06217 hypothetical protein; Validated
Probab=96.70 E-value=0.0015 Score=51.20 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=28.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCCCCC--CeEEEEE
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRDQFF--DQVIFVE 210 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~~~F--d~~~wv~ 210 (250)
.|.|.|++|+||||+++.+...... .+| |..+|-.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeecc
Confidence 4899999999999999999988765 345 5677754
No 109
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.69 E-value=0.002 Score=50.11 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+|.++|.+|+||||+++.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999998764
No 110
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.69 E-value=0.0019 Score=49.76 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....|.++|++|+||||+|+.+.....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 345889999999999999999998874
No 111
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.013 Score=51.89 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=38.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHHHHHHHHHhCCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH-IPDIRKIQGEIADKLGLIFF 233 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~-~~~~~~l~~~i~~~l~~~~~ 233 (250)
+..+++++|..|+||||++..+.........-+.+.+++... .....+-+....+.+|.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~ 252 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR 252 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee
Confidence 457999999999999999998876532222223444444322 12333335566677777754
No 112
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.68 E-value=0.0071 Score=53.27 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=48.4
Q ss_pred CCcChHHHHHHHHHHhcCC--------------CceEEEEEccCCCCHHHHHHHHHHHhcCCCCC--CeEEEEEcCCC-C
Q 036637 153 AFESRSSTLNNVLRALQDP--------------DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFF--DQVIFVEVPHI-P 215 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~F--d~~~wv~vs~~-~ 215 (250)
.++|.+..++.+.-.+.+. .++-|-++|++|+||||||+.+....... .+ |..-|+..+.. .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~-fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP-FIKVEATKFTEVGYVGR 91 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe-EEEeecceeecCCcccC
Confidence 4778888877776555521 24678899999999999999999887642 22 33333333322 2
Q ss_pred CHHHHHHHHHHH
Q 036637 216 DIRKIQGEIADK 227 (250)
Q Consensus 216 ~~~~l~~~i~~~ 227 (250)
+.+++++.++..
T Consensus 92 dvE~i~r~l~e~ 103 (441)
T TIGR00390 92 DVESMVRDLTDA 103 (441)
T ss_pred CHHHHHHHHHHH
Confidence 566666665444
No 113
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.67 E-value=0.0017 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
||.|+|++|+||||+++.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988764
No 114
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.66 E-value=0.0016 Score=48.67 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|.|+|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 115
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.65 E-value=0.0019 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcC
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
|.|+|..|+|||||.+.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999977654
No 116
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.65 E-value=0.0015 Score=51.06 Aligned_cols=24 Identities=50% Similarity=0.697 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|+|.|..|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998864
No 117
>PRK09087 hypothetical protein; Validated
Probab=96.65 E-value=0.0054 Score=49.90 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=26.4
Q ss_pred HHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 164 VLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 164 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+++.+.+.....+.|||..|+|||+|++.+++...
T Consensus 35 ~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~ 69 (226)
T PRK09087 35 LVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSD 69 (226)
T ss_pred HHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcC
Confidence 44433344456789999999999999999987653
No 118
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.64 E-value=0.0038 Score=46.79 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=28.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH 213 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~ 213 (250)
.+|.|+|..|+|||||++.+.+....+ .+...+..+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 478999999999999999999988643 455555565555
No 119
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.64 E-value=0.0099 Score=57.08 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCCcChHHHHHHHHHHhc------CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 152 EAFESRSSTLNNVLRALQ------DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..++|.+..++.+.+++. .....++.++|++|+|||++|+.+.+...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 357898888888888764 12344789999999999999999998874
No 120
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.64 E-value=0.0093 Score=50.86 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=44.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCC----CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQF----FDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~----Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
...++-|+|.+|+||||++-+++-....... =..++||+...+|+...+. ++++.++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~ 156 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLD 156 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 3578889999999999999999877643211 1279999999999888765 455666654
No 121
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.63 E-value=0.0035 Score=49.14 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=31.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH 213 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~ 213 (250)
.++|.|+|+.|+|||||++.+..... .+|...++.+-.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TTR~ 40 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTTRP 40 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEESS-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeecccC
Confidence 57899999999999999999998765 4586666665543
No 122
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.62 E-value=0.0047 Score=51.45 Aligned_cols=54 Identities=20% Similarity=0.368 Sum_probs=42.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCC-CeEEEEEcCCCC-CHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFF-DQVIFVEVPHIP-DIRKIQGEIADK 227 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~F-d~~~wv~vs~~~-~~~~l~~~i~~~ 227 (250)
.-.-++|.|..|+|||||++.+++.... +| +.++++-+++.. .+.++.+.+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~ 123 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKES 123 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhc
Confidence 3456799999999999999999999874 35 578888888775 556677776543
No 123
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.62 E-value=0.0021 Score=50.06 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 124
>PRK13975 thymidylate kinase; Provisional
Probab=96.61 E-value=0.0057 Score=48.32 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..|.|.|+.|+||||+++.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999988763
No 125
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.61 E-value=0.014 Score=55.97 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=39.9
Q ss_pred cCCCcChHHHHHHHHHHhcC------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQD------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|.+.-++.++++|.. ....++.++|++|+||||+++.+.....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999988771 2456899999999999999999997654
No 126
>PRK13949 shikimate kinase; Provisional
Probab=96.59 E-value=0.0021 Score=49.87 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
-|.|+|++|+||||+++.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999887764
No 127
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.59 E-value=0.0022 Score=49.81 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4569999999999999999999977653
No 128
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.59 E-value=0.0043 Score=52.07 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 163 NVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 163 ~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+++...+..++.|+|.+|+|||||+..+.+...
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344445567899999999999999999999998865
No 129
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.58 E-value=0.0084 Score=51.77 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=44.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCC---CC-CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRD---QF-FDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~---~~-Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
-.++-|+|.+|+|||+|+-+++-..+.. .. -...+|++...+|+++.+.+ ++++++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4577799999999999999987554432 11 24789999999999988765 56777765
No 130
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.57 E-value=0.0068 Score=56.53 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=59.8
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLG 229 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~ 229 (250)
....++|++..++.|...+... +-+-++|.+|+||||+++.+.+... +.+|+..+|..- ..-+...+++.++.++|
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 4456889888888777766544 3678999999999999999987753 345688888655 44588888999988877
Q ss_pred CCC
Q 036637 230 LIF 232 (250)
Q Consensus 230 ~~~ 232 (250)
...
T Consensus 105 ~~~ 107 (637)
T PRK13765 105 KQI 107 (637)
T ss_pred HHH
Confidence 654
No 131
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.56 E-value=0.0051 Score=52.99 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=40.1
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...++|.+..+..|+-.+.++..+-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 35688999999998888888877778899999999999999997544
No 132
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.55 E-value=0.0041 Score=53.72 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=41.9
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+...++|.+..+..|+..+.++.++-+-|.|..|+||||+|+.+++-.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 556789999999999988888888877799999999999999997654
No 133
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.55 E-value=0.0079 Score=51.35 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=45.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC---CC-CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ---FF-DQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~---~F-d~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++-|+|.+|+|||||+.+++-..+... .- ..++|++...+|+++.+.+ ++++++.+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 346888999999999999998775544321 11 3789999999999988764 57777765
No 134
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.54 E-value=0.002 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
++|.|+|+.|+|||||++.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999874
No 135
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.54 E-value=0.01 Score=49.25 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=39.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEI 224 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i 224 (250)
+..+++.|.|.+|+|||+++.+.-..-. ++...++||+..++ ..++.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCC--HHHHHHHH
Confidence 4678999999999999999998776665 34889999999886 44444444
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=96.54 E-value=0.0067 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+-++|.+|+||||+|+.+++..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999997764
No 137
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.012 Score=53.38 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..++|+++|.+|+||||++..+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999988876543
No 138
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.53 E-value=0.0053 Score=50.21 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 160 TLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
.+..+-++...+....+.++|+.|+|||+|++.+++..... -..+.++++.
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~ 82 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD 82 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence 34444444445555688999999999999999999865422 2234555554
No 139
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.53 E-value=0.0026 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+|+|+|..|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999764
No 140
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.53 E-value=0.0029 Score=50.33 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....+|.|+|++|+|||||++.+....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4677899999999999999999998865
No 141
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.52 E-value=0.0041 Score=47.51 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=25.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEE
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFV 209 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv 209 (250)
|++|+|..|+|||||+..+....+.+ .+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 58999999999999999999876532 34443333
No 142
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.52 E-value=0.01 Score=55.28 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=52.3
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGL 230 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~ 230 (250)
...++|++..++.+...+... ..+ -++|++|+||||+++.+.+...- ..|...+++. ...-+..++++.++.++|.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~-~~~-ll~G~pG~GKT~la~~la~~l~~-~~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK-RNV-LLIGEPGVGKSMLAKAMAELLPD-EELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC-CCE-EEECCCCCCHHHHHHHHHHHcCc-hhheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 346788888777766666544 344 49999999999999999977643 2333333332 2233666778999888875
Q ss_pred C
Q 036637 231 I 231 (250)
Q Consensus 231 ~ 231 (250)
.
T Consensus 93 ~ 93 (608)
T TIGR00764 93 E 93 (608)
T ss_pred H
Confidence 5
No 143
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.52 E-value=0.0045 Score=50.42 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
-|.|+|++|+||||+|+.+.+....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3889999999999999999888753
No 144
>PRK13695 putative NTPase; Provisional
Probab=96.51 E-value=0.0037 Score=48.52 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.|+|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987754
No 145
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.0045 Score=54.73 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=39.7
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|..++.++.+ +.+-++|+.|+||||+|+.+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 445788999888888888876554 5588999999999999998877663
No 146
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.50 E-value=0.0023 Score=48.33 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++.++|++|+||||+|+.+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC
Confidence 467999999999999999988753
No 147
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0022 Score=49.25 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=18.6
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~ 194 (250)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 148
>PRK08727 hypothetical protein; Validated
Probab=96.49 E-value=0.011 Score=48.27 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 036637 156 SRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH 213 (250)
Q Consensus 156 gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~ 213 (250)
|-......+...........+.++|..|+|||+|++.+++....+ ....+|+++.+
T Consensus 24 ~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~ 79 (233)
T PRK08727 24 APDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA 79 (233)
T ss_pred CcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH
Confidence 333444444443334444569999999999999999999876533 33556776654
No 149
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.48 E-value=0.011 Score=50.58 Aligned_cols=53 Identities=30% Similarity=0.347 Sum_probs=39.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-+++-|.|.+|+|||||+-++...... .=..++|+...+.++.. .++++|.+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~-----~a~~lGvd 106 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YARKLGVD 106 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH-----HHHHcCCC
Confidence 3468889999999999999987766642 23567899888777763 35666655
No 150
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.018 Score=52.53 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=40.0
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..++.|.+++..+.+ +.+-++|+.|+||||+|+.+.+..
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999986654 467899999999999999887755
No 151
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.48 E-value=0.016 Score=52.27 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=38.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC--CHHHHHHHHHHHhCCCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP--DIRKIQGEIADKLGLIFF 233 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~--~~~~l~~~i~~~l~~~~~ 233 (250)
.+|++++|..|+||||++.++......+..-..+..++. .++ ...+-++...+.++++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilGVpv~ 317 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRIGGHEQLRIYGKILGVPVH 317 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhCCCee
Confidence 479999999999999999999976643322223444443 334 333335555677776643
No 152
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.013 Score=54.47 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=38.6
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHH
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
....++|.+..+..|.+++..+.+ +.+-++|..|+||||+|+.+.+.
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445678999889999998886655 67789999999999999988443
No 153
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.47 E-value=0.01 Score=50.69 Aligned_cols=52 Identities=33% Similarity=0.409 Sum_probs=39.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
-+++-|.|.+|+|||||+-+++-.... .-..++|++..+.+++. .++++|.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd 106 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVD 106 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCC
Confidence 568889999999999999998866642 23578899988877763 45566655
No 154
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.47 E-value=0.0037 Score=47.63 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
..+|=++|.+|+||||||+.+.......
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4688899999999999999999988643
No 155
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.46 E-value=0.0025 Score=45.40 Aligned_cols=23 Identities=57% Similarity=0.749 Sum_probs=19.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|-|+|.+|+|||+||+.+..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999776654
No 156
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.45 E-value=0.045 Score=47.10 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=57.7
Q ss_pred CCCcChHHHHHHHHHHhc------CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC----CCC---CHH
Q 036637 152 EAFESRSSTLNNVLRALQ------DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP----HIP---DIR 218 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs----~~~---~~~ 218 (250)
..++|.++.++++++.+. +..-+++-++|+.|.|||||++.+.+-.+. + .+|+-.. ..| =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 478999999999999887 346789999999999999999999987763 2 5555332 111 145
Q ss_pred HHHHHHHHHhCCCCCC
Q 036637 219 KIQGEIADKLGLIFFE 234 (250)
Q Consensus 219 ~l~~~i~~~l~~~~~~ 234 (250)
++-+.+.+.++...++
T Consensus 136 ~~r~~~~~~~~~~i~g 151 (358)
T PF08298_consen 136 ELRREFEDELGIRIEG 151 (358)
T ss_pred hHHHHHHHHhCcccCC
Confidence 5556677777775543
No 157
>PRK14527 adenylate kinase; Provisional
Probab=96.44 E-value=0.0041 Score=49.13 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=25.0
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
....+|.|+|.+|+||||+|+.+.+....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35678999999999999999999877754
No 158
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.0046 Score=55.46 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=40.6
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..+..|..++.++.+ +.+-++|..|+||||+|+.+.+...
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445688999888888888887765 4688999999999999999987653
No 159
>PRK13947 shikimate kinase; Provisional
Probab=96.44 E-value=0.0029 Score=48.84 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
-|.|+|++|+||||+++.+-+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999887653
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.43 E-value=0.0044 Score=58.96 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=44.5
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCC---CC-CCeEEEE
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRD---QF-FDQVIFV 209 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~---~~-Fd~~~wv 209 (250)
...++||+.++..+++.|......-+-++|.+|+|||++|+.+....... .. .++.+|.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~ 247 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence 45689999999999998886544444689999999999999998765221 12 2567765
No 161
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.42 E-value=0.0053 Score=46.40 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=29.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP 215 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~ 215 (250)
++.|+|.+|+||||++..+...... .-..++|+.....+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcch
Confidence 4689999999999999999877743 23467777766554
No 162
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.42 E-value=0.0027 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 163
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.41 E-value=0.0082 Score=48.30 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=33.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc-----CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG-----RDQFFDQVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~-----v~~~Fd~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
+..|+|++|.||||++..+-.... ....-+..+-++...+..+.+++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 778999999999986666655551 1123455666666666677888887766
No 164
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.016 Score=50.84 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+.++|+++|.+|+||||++..+.....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 458999999999999999999987654
No 165
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.41 E-value=0.01 Score=43.96 Aligned_cols=30 Identities=30% Similarity=0.254 Sum_probs=25.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
..-.+|.+.|.-|+||||+++.+.......
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345689999999999999999999887654
No 166
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.40 E-value=0.01 Score=46.62 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 167
>PRK14530 adenylate kinase; Provisional
Probab=96.40 E-value=0.0034 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.|+|++|+||||+++.+.....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987774
No 168
>PRK09354 recA recombinase A; Provisional
Probab=96.39 E-value=0.014 Score=50.44 Aligned_cols=53 Identities=32% Similarity=0.362 Sum_probs=41.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIF 232 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~ 232 (250)
-+++-|.|.+|+|||||+-++.....- .-..++|+...+.+++. .++++|.+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~-----~a~~lGvdl 112 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YAKKLGVDI 112 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHH-----HHHHcCCCH
Confidence 568889999999999999998876652 23578999998888863 466677653
No 169
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.39 E-value=0.0033 Score=47.46 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=24.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEE
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIF 208 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~w 208 (250)
|.++|++|+||||+|+.+....... .|+.-.|
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~-~~~~d~~ 33 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP-FVDLDEL 33 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC-EEEchHH
Confidence 6899999999999999998776432 3443333
No 170
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.39 E-value=0.016 Score=47.31 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCCcCCCcChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC--CCCHHHHH
Q 036637 148 NKDYEAFESRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH--IPDIRKIQ 221 (250)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~--~~~~~~l~ 221 (250)
+.....++|.+.+++.|++-.. .....-+-+||..|+|||+|++.+.+....++ .+ -|.|+. -.++.+|+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~~L~~l~~l~ 98 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKEDLGDLPELL 98 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHHHhccHHHHH
Confidence 3355678999888877766433 44556667899999999999999998886554 22 244443 24666666
Q ss_pred HHHH
Q 036637 222 GEIA 225 (250)
Q Consensus 222 ~~i~ 225 (250)
..|-
T Consensus 99 ~~l~ 102 (249)
T PF05673_consen 99 DLLR 102 (249)
T ss_pred HHHh
Confidence 5554
No 171
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.0079 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..++.++|.+|+||||++.++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999988654
No 172
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0063 Score=47.55 Aligned_cols=29 Identities=41% Similarity=0.574 Sum_probs=24.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCCCCCC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRDQFFD 204 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd 204 (250)
.|.|.|.+|+||||+|+.+.+...+. |.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~-hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP-HLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc-EEc
Confidence 47899999999999999999996553 444
No 173
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.38 E-value=0.012 Score=51.94 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=49.5
Q ss_pred CCCcChHHHHHHHHHHhcC--------------CCceEEEEEccCCCCHHHHHHHHHHHhcCC-CCCCeEEEEEcCCC-C
Q 036637 152 EAFESRSSTLNNVLRALQD--------------PDVNMVGIYGMGGIGKTTLAKEVAIQFGRD-QFFDQVIFVEVPHI-P 215 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~-~~Fd~~~wv~vs~~-~ 215 (250)
..++|.+..++.+..++.+ ...+-|-++|+.|+||||||+.+....... -++|..-|...+.. .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 3578988888888777642 124678999999999999999998876532 02344434433322 2
Q ss_pred CHHHHHHHHHHHh
Q 036637 216 DIRKIQGEIADKL 228 (250)
Q Consensus 216 ~~~~l~~~i~~~l 228 (250)
+.+.+++.++...
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 174
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.38 E-value=0.0088 Score=45.98 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|.|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999987654
No 175
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.36 E-value=0.0035 Score=48.54 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|.|.|.+|+|||||++.+.+..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998874
No 176
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.36 E-value=0.0038 Score=51.20 Aligned_cols=54 Identities=28% Similarity=0.351 Sum_probs=31.6
Q ss_pred EEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC---------CCCHHHHH--HHHHHHhCCCCC
Q 036637 178 IYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH---------IPDIRKIQ--GEIADKLGLIFF 233 (250)
Q Consensus 178 I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~---------~~~~~~l~--~~i~~~l~~~~~ 233 (250)
|+|++|+||||+++.+.+.....+ ..++-|..-+ ..|++++. +++++..++..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPN 65 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPN 65 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCc
Confidence 689999999999999999887543 2344454432 23455553 556666665544
No 177
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.36 E-value=0.0086 Score=46.35 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++.++|++|+||||++..+.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999887654
No 178
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.01 Score=47.15 Aligned_cols=45 Identities=31% Similarity=0.375 Sum_probs=32.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQG 222 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~ 222 (250)
..+|+|-||=|+||||||+.+-++...+ .++-.|.+++=+..+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~ 48 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYE 48 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHH
Confidence 4689999999999999999999988743 33344555544444333
No 179
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0035 Score=47.85 Aligned_cols=48 Identities=33% Similarity=0.396 Sum_probs=36.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIF 232 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~ 232 (250)
.+++.|+|.+|+||||+.+.+-... +. . +-.|...++-.++...|+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~---~--------~ivNyG~~Mle~A~k~glve 51 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK---H--------KIVNYGDLMLEIAKKKGLVE 51 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh---c--------eeeeHhHHHHHHHHHhCCcc
Confidence 6899999999999999998877655 11 1 11367788888888887764
No 180
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.33 E-value=0.0035 Score=49.97 Aligned_cols=35 Identities=31% Similarity=0.259 Sum_probs=27.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEE
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFV 209 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv 209 (250)
.-.|++|+|+.|+|||||.+.+..-+... +-.||+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i 61 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITV 61 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEE
Confidence 45789999999999999999998766543 245555
No 181
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.32 E-value=0.0032 Score=47.00 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.|.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999764
No 182
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.31 E-value=0.012 Score=50.78 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=45.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC---CC-CeEEEEEcCCCCCHHHHHHHHHHHhCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ---FF-DQVIFVEVPHIPDIRKIQGEIADKLGLIF 232 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~---~F-d~~~wv~vs~~~~~~~l~~~i~~~l~~~~ 232 (250)
.-.++-|.|.+|+|||+|+..++-...... .- ..++|++...+|.++.+. +|++.++.+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~ 185 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNG 185 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCCh
Confidence 356788999999999999998886544221 11 379999999999988764 5677777653
No 183
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.31 E-value=0.014 Score=50.02 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=43.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCC----CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFF----DQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~F----d~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
...++-|+|.+|+|||+++-++.-.......+ ..++|++...+|++..+.+ +++.++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~ 163 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLD 163 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCC
Confidence 46788899999999999999998765432211 4799999999888877653 44556543
No 184
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.30 E-value=0.013 Score=47.48 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=34.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRK 219 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~ 219 (250)
.-.++-|+|.+|+||||++.++...... .-..++|++.. .++.+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHH
Confidence 3568999999999999999998876642 24678889887 554443
No 185
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0091 Score=44.80 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
-|-|.|.+|+|||||+..+.....
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhC
Confidence 467999999999999999996654
No 186
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.29 E-value=0.0045 Score=48.07 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...|.|+|+.|+||||+++.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998754
No 187
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.29 E-value=0.016 Score=47.33 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=35.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++.|.|..|+|||||+.++...... .. ..+++++... +..++++.+ .++|.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g-~~~~yi~~e~--~~~~~~~~~-~~~g~~ 77 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NG-YSVSYVSTQL--TTTEFIKQM-MSLGYD 77 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEeCCC--CHHHHHHHH-HHhCCc
Confidence 3458999999999999997655444321 22 3456776444 456777766 456553
No 188
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.28 E-value=0.016 Score=51.70 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=26.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc-CCCCCCeEEEEEc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG-RDQFFDQVIFVEV 211 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~-v~~~Fd~~~wv~v 211 (250)
.+++.++|++|+||||++..+..... ... -..+..|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEEC
Confidence 46999999999999998888765543 222 234445554
No 189
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.28 E-value=0.01 Score=54.13 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=40.4
Q ss_pred CCcChHHHHHHHHHHhcC-----CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEE
Q 036637 153 AFESRSSTLNNVLRALQD-----PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVE 210 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~ 210 (250)
.+.-...-++++..||.+ ...+++-+.|++|+||||.++.+.+... |+.+=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 344445566777777762 2357899999999999999999998874 77777863
No 190
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.28 E-value=0.019 Score=47.56 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=44.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCC---CC-CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQ---FF-DQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~---~F-d~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
-.+.=|+|.+|+|||+|+-+++-...... .. ..++|++-..+|+.+.+. +|+++.+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~ 99 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLD 99 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccc
Confidence 45778999999999999999987765532 22 379999999999988875 577776544
No 191
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.0072 Score=55.70 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=39.7
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|++..++.+.+++..+. .+.+-++|+.|+||||+|+.+.+..
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44578899999999999887544 4578899999999999999987665
No 192
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.26 E-value=0.0047 Score=47.32 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=23.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
.+|++|+|..|+|||||+..+-...+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4799999999999999999997666433
No 193
>PRK01184 hypothetical protein; Provisional
Probab=96.26 E-value=0.014 Score=45.71 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=18.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.+|.|+|++|+||||+++ +...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 194
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.25 E-value=0.0029 Score=50.76 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=23.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.-|.|+|.+|+|||||+..+..+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 56899999999999999999987754
No 195
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.25 E-value=0.012 Score=49.31 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=42.5
Q ss_pred HHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 036637 161 LNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQ 221 (250)
Q Consensus 161 ~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~ 221 (250)
-.+|+..+. .....+|+|.|.||+||+||.-.+-.....+++=-.++=|.-|.++.--.|+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 355666666 4567899999999999999999988877655443344444445556555554
No 196
>PRK04182 cytidylate kinase; Provisional
Probab=96.25 E-value=0.0047 Score=47.94 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988764
No 197
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.25 E-value=0.014 Score=47.12 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=36.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC----CCCeEEEEEcCCCCCHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ----FFDQVIFVEVPHIPDIRKIQ 221 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~----~Fd~~~wv~vs~~~~~~~l~ 221 (250)
.-.++.|+|.+|+|||+|+.++.-...... .=..++|+.....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 356899999999999999999876653221 00457888888777765554
No 198
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.24 E-value=0.0035 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.++|++|+||||+++.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 199
>PRK05439 pantothenate kinase; Provisional
Probab=96.24 E-value=0.0089 Score=50.83 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+.+|+|.|.+|+||||+|+.+..-.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987744
No 200
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.024 Score=53.56 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=39.9
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+++..+. .+.+-++|..|+||||+++.+.+...
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44578999999999999888655 45667999999999999998776553
No 201
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.21 E-value=0.0065 Score=48.46 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEE
Q 036637 159 STLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFV 209 (250)
Q Consensus 159 ~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv 209 (250)
..-...++.|. ...++.+.|++|.|||.||-..--+.-..+.++.++++
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34445566665 56689999999999999999887666555789988877
No 202
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.0041 Score=50.61 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-..++|+|..|+|||||.+.|..-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999987544
No 203
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.20 E-value=0.017 Score=46.47 Aligned_cols=42 Identities=21% Similarity=0.425 Sum_probs=30.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP 215 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~ 215 (250)
.-.++.|.|.+|+||||++.++....... =..++|++....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCC
Confidence 35788999999999999999988765321 2356677665444
No 204
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.20 E-value=0.0043 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.|+++|.+|+|||||+..+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998765
No 205
>PRK14974 cell division protein FtsY; Provisional
Probab=96.19 E-value=0.015 Score=50.03 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=38.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCH--HHHHHHHHHHhCCCC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDI--RKIQGEIADKLGLIF 232 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~--~~l~~~i~~~l~~~~ 232 (250)
..+.+|.++|+.|+||||++..+...... ..+. ++.+. ..++.. .+-++....+++.+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCce
Confidence 34789999999999999988888766543 2343 33333 334433 333566777887764
No 206
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.19 E-value=0.0058 Score=48.57 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+|.|.|.+|+||||+++.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 207
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.18 E-value=0.019 Score=45.22 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999987764
No 208
>PF13245 AAA_19: Part of AAA domain
Probab=96.17 E-value=0.014 Score=38.75 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=19.4
Q ss_pred CceEEEEEccCCCCHH-HHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKT-TLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKT-tLa~~v~~~~ 197 (250)
+.++..|.|.+|.||| |++..+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567788999999999 5555555555
No 209
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.17 E-value=0.0053 Score=48.38 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998754
No 210
>PLN02200 adenylate kinase family protein
Probab=96.17 E-value=0.0065 Score=49.68 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.+|.|.|++|+||||+++.+.....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999987664
No 211
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.01 Score=51.77 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=40.6
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+...+.+.+.+.+..+ +.+-++|+.|+||||+|+.+.+...
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445678999999999998886554 5788999999999999999977653
No 212
>PRK13946 shikimate kinase; Provisional
Probab=96.16 E-value=0.0057 Score=48.02 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.|.++|+.|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 213
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.16 E-value=0.011 Score=52.16 Aligned_cols=48 Identities=29% Similarity=0.299 Sum_probs=37.2
Q ss_pred cCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..++.|.+..+++|.+.+. . ..++-+-++|.+|+|||+||+.+.+...
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 4467888888777776553 1 2456788999999999999999998764
No 214
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.15 E-value=0.0098 Score=45.55 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 160 TLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++.|.++|.+ +++.++|..|+|||||+..+..+.
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35677776654 889999999999999999998774
No 215
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.15 E-value=0.015 Score=47.79 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=30.2
Q ss_pred HHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 160 TLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 160 ~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
....+++.+. ..+..+|+|.|.+|+||+||+..+-.....
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 4556666666 346789999999999999999998777754
No 216
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.0087 Score=55.61 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=40.2
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..++.|..++..+. .+.+-++|..|+||||+|+.+.+..
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999888665 4677899999999999999887665
No 217
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0047 Score=50.06 Aligned_cols=26 Identities=38% Similarity=0.413 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..=.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45688999999999999999986433
No 218
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.13 E-value=0.0045 Score=45.82 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
-.+++|+|..|+|||||.+.++....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 35789999999999999999886553
No 219
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.12 E-value=0.0049 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|.|+|.+|+|||||++.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999887763
No 220
>PRK13948 shikimate kinase; Provisional
Probab=96.12 E-value=0.0071 Score=47.45 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.....|.++||.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999987653
No 221
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.12 E-value=0.01 Score=51.14 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=38.7
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+...++|.+..++.++-.+.+.+.+-+-+.|..|+||||+|+.+-+-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 455688999988888876766666668899999999999999985543
No 222
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.11 E-value=0.019 Score=49.13 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=42.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCC---C-CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRD---Q-FFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~---~-~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
...++-|.|.+|+|||||+..++...... . .-..++|++....|+...+ ..+++.++.+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 46788999999999999999988644321 1 1236799999888888764 4456666554
No 223
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.11 E-value=0.0047 Score=44.37 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 224
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.09 E-value=0.014 Score=49.83 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=36.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGE 223 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~ 223 (250)
.+++.+.|.||+||||+|-..--..... .....-|++.+.+++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCCchHhhhcc
Confidence 4788999999999999998844333322 244777888888888888765
No 225
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.09 E-value=0.006 Score=43.37 Aligned_cols=22 Identities=50% Similarity=0.446 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~ 194 (250)
-..++|+|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999976
No 226
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.09 E-value=0.006 Score=47.60 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.++.|+|..|+|||||++.+......
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57899999999999999999987653
No 227
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.032 Score=48.73 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=39.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHHHHHHHHHhCCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH-IPDIRKIQGEIADKLGLIFF 233 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~-~~~~~~l~~~i~~~l~~~~~ 233 (250)
+.+++.++|..|+||||++..+......++ ..+.+++... .....+-++...+.++.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~ 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELI 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEE
Confidence 567999999999999999999887653322 2455555432 22334445666777776643
No 228
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.08 E-value=0.0062 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..+.|.|+|.+|+|||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678899999999999999999754
No 229
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.08 E-value=0.021 Score=45.33 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.+|+|.|+.|+||||+++.+.+....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987643
No 230
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.08 E-value=0.011 Score=43.24 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=24.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
.+-.||.+.|.-|+||||+++.+..-..+.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 455899999999999999999999887654
No 231
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.08 E-value=0.0088 Score=54.88 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=38.9
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...++|.+...+.+...+......-+-|+|..|+||||+|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999888888888776666667899999999999999998753
No 232
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.0099 Score=53.71 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=37.9
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHH
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
....++|.+..++.|.+.+..+.+ +.+-++|..|+||||+|+.+..
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 445788999888888888776655 4788999999999999998865
No 233
>PTZ00035 Rad51 protein; Provisional
Probab=96.07 E-value=0.03 Score=48.35 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=42.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCC---C-CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRD---Q-FFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~---~-~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++.|+|.+|+|||||+..++-..+.. . .=..++|+....+|+++.+ ..++++++.+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 35788899999999999999988665421 1 1136779998888888774 4456666654
No 234
>PRK06761 hypothetical protein; Provisional
Probab=96.07 E-value=0.0094 Score=49.97 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=26.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEE
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVI 207 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~ 207 (250)
.+|.|.|.+|+||||+++.+.+.... ..++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~-~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ-NGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc-CceEEEE
Confidence 57999999999999999999988753 2444444
No 235
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.07 E-value=0.005 Score=47.24 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=17.9
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 236
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.06 E-value=0.02 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
-+-++|.+|+||||+|+.+..-..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 577999999999999977765543
No 237
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.019 Score=49.84 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=41.9
Q ss_pred CCCcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 148 NKDYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|.....++|.+.....+...+.... .+.+-++|..|+||||+|..+.+..-
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 3356678999999999999887654 45788999999999999998777663
No 238
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.05 E-value=0.03 Score=54.22 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=52.0
Q ss_pred CcChHHHHHHHHHHhc---CCCceEEEEEccCCCCHHHHHHHHHHHhcCC-CCCCeEEEEEcCCC---CCHHHHHHHHHH
Q 036637 154 FESRSSTLNNVLRALQ---DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRD-QFFDQVIFVEVPHI---PDIRKIQGEIAD 226 (250)
Q Consensus 154 ~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~-~~Fd~~~wv~vs~~---~~~~~l~~~i~~ 226 (250)
++||+.+.+.|...+. .....++.+.|..|+|||+|++.|.....-+ +.|=.-.+-....+ ....+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999988877 4456799999999999999999999877543 22211111111222 245566777777
Q ss_pred Hh
Q 036637 227 KL 228 (250)
Q Consensus 227 ~l 228 (250)
++
T Consensus 82 ~l 83 (849)
T COG3899 82 QL 83 (849)
T ss_pred HH
Confidence 77
No 239
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.05 E-value=0.049 Score=44.53 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=37.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHH-HHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVA-IQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGL 230 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~-~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~ 230 (250)
.-.++-|.|.+|+|||+|+.++. +-.+ .-..++||+...+ +.++.+.+ .+++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee~--~~~i~~~~-~~~g~ 73 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEEH--PVQVRRNM-AQFGW 73 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeCC--HHHHHHHH-HHhCC
Confidence 45788999999999999998854 4442 2457889988764 55565553 34443
No 240
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.04 E-value=0.0054 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.++|++|+||||+|+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987664
No 241
>PLN02796 D-glycerate 3-kinase
Probab=96.03 E-value=0.0068 Score=52.09 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.+-+|+|.|..|+|||||++.+..-...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 5678999999999999999999987753
No 242
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.029 Score=52.17 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=40.6
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+++..+.+ +.+-++|..|+||||+|+.+.+...
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445789999999999999886654 5668999999999999999876653
No 243
>PLN02165 adenylate isopentenyltransferase
Probab=96.02 E-value=0.0093 Score=51.03 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=26.3
Q ss_pred hcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 168 LQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 168 L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+.+....+|+|+|+.|+|||||+..+.....
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 4566667999999999999999999988753
No 244
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.01 E-value=0.0072 Score=50.57 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
++|+|+|.+|+|||||+..+.....-+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~ 28 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGR 28 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 589999999999999999998887644
No 245
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.01 E-value=0.016 Score=52.72 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=34.5
Q ss_pred CcCCCcChHHHHHHHHHHh---cC---------CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 150 DYEAFESRSSTLNNVLRAL---QD---------PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
...++.|.+..++++.+.+ .+ ..++-+-++|++|+|||+||+.+.+...+
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456778776665554433 22 12344779999999999999999987643
No 246
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.041 Score=48.37 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=39.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC-CC-CeEEEEEcCCCCCH--HHHHHHHHHHhCCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ-FF-DQVIFVEVPHIPDI--RKIQGEIADKLGLIFF 233 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~-~F-d~~~wv~vs~~~~~--~~l~~~i~~~l~~~~~ 233 (250)
...+|.++|..|+||||.+..+........ +- ..+..++.. ++.. .+-++...+.++.|..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~ 237 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK 237 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE
Confidence 467999999999999999988877654321 11 234444443 3332 3336677777777754
No 247
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.043 Score=50.32 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=39.5
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..++.|..++..+.+ +.+-++|..|+||||+|+.+....
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999998887655 466899999999999999987665
No 248
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.038 Score=52.41 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=44.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCC--HHHHHHHHHHHhCCCCCC-CCHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPD--IRKIQGEIADKLGLIFFE-ETESGRARSL 244 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~--~~~l~~~i~~~l~~~~~~-~~~~~~~~~l 244 (250)
..+|.++|..|+||||.+..+.........-+.+..++. .++. ..+-++...+.++.+... .+..+..+.|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al 258 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL 258 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Confidence 479999999999999999988876632211234444443 3343 455567777888877653 3344433333
No 249
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.00 E-value=0.015 Score=50.35 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=39.8
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..++.+.+++.+.. .+.+-++|.+|+||||+|+.+....
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44567899999999999887655 4567899999999999998887664
No 250
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.99 E-value=0.0058 Score=47.76 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~ 195 (250)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999887
No 251
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.99 E-value=0.015 Score=51.96 Aligned_cols=48 Identities=29% Similarity=0.378 Sum_probs=36.6
Q ss_pred cCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..++.|.+..++++.+.+. + ....-+.++|.+|+|||++|+.|.+...
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3456788888887777653 1 2345577999999999999999999764
No 252
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.011 Score=55.02 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=39.3
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..+..|.+++.++.+ +.+-++|+.|+||||+|+.+.+..
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 445788999999999888876554 568899999999999998877665
No 253
>PRK05642 DNA replication initiation factor; Validated
Probab=95.98 E-value=0.036 Score=45.33 Aligned_cols=38 Identities=13% Similarity=0.517 Sum_probs=28.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
...+.|+|..|+|||.|++.+++....+ -..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH
Confidence 3678999999999999999998865422 1345677664
No 254
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.98 E-value=0.041 Score=45.76 Aligned_cols=56 Identities=27% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 036637 159 STLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQ 221 (250)
Q Consensus 159 ~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~ 221 (250)
.-++.++.++... . -+-+.|.+|+|||+||+.+.+... . ..++++.+...+..+++
T Consensus 9 ~l~~~~l~~l~~g-~-~vLL~G~~GtGKT~lA~~la~~lg----~-~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG-Y-PVHLRGPAGTGKTTLAMHVARKRD----R-PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC-C-eEEEEcCCCCCHHHHHHHHHHHhC----C-CEEEEeCCccCCHHHHh
Confidence 3455566655543 2 345899999999999999986332 1 23445555555555443
No 255
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.98 E-value=0.011 Score=55.19 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=40.9
Q ss_pred CCCcCCCcChHHHHHHHHHHhcC-----CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 148 NKDYEAFESRSSTLNNVLRALQD-----PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|.....++|.+..++++..++.+ ...+++.++|.+|+||||+++.+.+...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556788988888888888773 2345799999999999999999987653
No 256
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.98 E-value=0.0068 Score=47.67 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|.|.|++|+||||+++.+.....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988754
No 257
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.97 E-value=0.0079 Score=46.12 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.+++|+|..|+|||||+..+......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987653
No 258
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.97 E-value=0.0059 Score=50.35 Aligned_cols=28 Identities=39% Similarity=0.525 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+.-.+++|+|+.|+|||||.+.++.-.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3567899999999999999999998543
No 259
>PRK06620 hypothetical protein; Validated
Probab=95.96 E-value=0.0061 Score=49.13 Aligned_cols=25 Identities=28% Similarity=0.065 Sum_probs=21.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+-++|.+|+|||+|++.+++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 5689999999999999999877653
No 260
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.96 E-value=0.015 Score=50.02 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=29.6
Q ss_pred HHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 161 LNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 161 ~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+++.+. ..+..+|+|.|.+|+|||||+..+.....
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555554 45788999999999999999999776665
No 261
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.96 E-value=0.0055 Score=51.24 Aligned_cols=26 Identities=38% Similarity=0.769 Sum_probs=22.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
+.|+|.|-||+||||++..+..-..-
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999888766643
No 262
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.022 Score=46.07 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+-..|+|+|..|.|||||.+.+..-.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc
Confidence 45688999999999999999998733
No 263
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.96 E-value=0.0065 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999988765
No 264
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.95 E-value=0.023 Score=41.56 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=33.5
Q ss_pred CCCcChHHHHHHHHHHhc----C---CCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 152 EAFESRSSTLNNVLRALQ----D---PDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~----~---~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..++|.+-..+.+++.+. + +.+-|++..|..|+|||.+++.|.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 356777666666665554 2 36779999999999999988877766
No 265
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.94 E-value=0.0058 Score=46.97 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
....|+|+|.+|+|||||++.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4456899999999999999999985
No 266
>PLN02348 phosphoribulokinase
Probab=95.93 E-value=0.0088 Score=52.23 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=25.5
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.+-+|+|.|.+|+||||+|+.+.+...
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35678999999999999999999998764
No 267
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.93 E-value=0.011 Score=45.79 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 162 NNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 162 ~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..+.+++.......|.++|.+|+|||||...+...
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 34455554444567889999999999999999653
No 268
>PRK08356 hypothetical protein; Provisional
Probab=95.93 E-value=0.0076 Score=47.77 Aligned_cols=22 Identities=41% Similarity=0.446 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~ 194 (250)
..+|.|+|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999993
No 269
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.92 E-value=0.013 Score=53.37 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=39.6
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..+..|...+..+. .+-+-++|..|+||||+|+.+.+...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 44567899988888888776554 46788999999999999999987663
No 270
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.91 E-value=0.014 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
++|.|+|..|+||||++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999866554
No 271
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.91 E-value=0.016 Score=50.71 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
+.-+|+|+|..|+|||||+..+....+.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~ 31 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSE 31 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999988763
No 272
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.90 E-value=0.0074 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.|+|.+|+|||||+..+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999988654
No 273
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.88 E-value=0.0087 Score=52.85 Aligned_cols=29 Identities=34% Similarity=0.343 Sum_probs=25.3
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..-.+.|+|+|..|+|||||++.+.+...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999999998754
No 274
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.87 E-value=0.017 Score=49.15 Aligned_cols=48 Identities=25% Similarity=0.482 Sum_probs=31.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGE 223 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~ 223 (250)
+++.++|-||+||||+|-..--...-++ ....-++..+.+++.+++..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l~~ 49 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVLGQ 49 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHHTS
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHhCC
Confidence 6789999999999999976554433222 23555666666666666543
No 275
>PRK14532 adenylate kinase; Provisional
Probab=95.86 E-value=0.0079 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|.+.|++|+||||+++.+.....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999986653
No 276
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.86 E-value=0.045 Score=46.77 Aligned_cols=54 Identities=30% Similarity=0.329 Sum_probs=37.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIFF 233 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~~ 233 (250)
-+++-|.|..|+|||||+-.+....+- .-..++|+...+.+++. .+.++|.+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~--~g~~~a~ID~e~~ld~~-----~a~~lGvdl~ 106 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK--QGGICAFIDAEHALDPE-----YAESLGVDLD 106 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TT-EEEEEESSS---HH-----HHHHTT--GG
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc--ccceeEEecCcccchhh-----HHHhcCcccc
Confidence 468999999999999999999887653 34589999999888764 3456676643
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.86 E-value=0.024 Score=50.32 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=36.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCC--HHHHHHHHHHHhCCCC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPD--IRKIQGEIADKLGLIF 232 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~--~~~l~~~i~~~l~~~~ 232 (250)
..+.+|.++|..|+||||++..+..-...+ .+ .++.|+. .++. ..+=++...++.+.|.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~-D~~R~aA~eQLk~~a~~~~vp~ 158 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCA-DTFRAGAFDQLKQNATKARIPF 158 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcC-cccchhHHHHHHHHhhccCCeE
Confidence 347899999999999999999887666532 23 2333333 2332 2233345566666653
No 278
>PRK13768 GTPase; Provisional
Probab=95.86 E-value=0.0095 Score=49.31 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..++.|+|.||+||||++..+..-...
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHh
Confidence 357899999999999999887766643
No 279
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.86 E-value=0.0093 Score=46.04 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..|.|+|+.|+||||+++.+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999988764
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.84 E-value=0.014 Score=46.40 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=28.8
Q ss_pred HHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 163 NVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 163 ~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
+.+..+...+-++..|.|.+|+||||+++.+.......
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 34444544556788899999999999999988777653
No 281
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.84 E-value=0.014 Score=54.38 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=39.4
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..+..|...+..+.+ +.+-++|..|+||||+|+.+.+..
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 445788999999999888886655 456899999999999999887655
No 282
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.84 E-value=0.0079 Score=48.41 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998664
No 283
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.84 E-value=0.0085 Score=40.97 Aligned_cols=25 Identities=40% Similarity=0.723 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999998877753
No 284
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.84 E-value=0.12 Score=46.03 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=57.9
Q ss_pred CCcCCCcChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 036637 149 KDYEAFESRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEI 224 (250)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i 224 (250)
..+..+.||+.++..+.+|+. .+..+-+=|.|.+|.|||.+...++.+..--..=-+++++.-..--....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 356778999999999999877 3567888899999999999999999887532111134555444334566777777
Q ss_pred HHHh
Q 036637 225 ADKL 228 (250)
Q Consensus 225 ~~~l 228 (250)
+..+
T Consensus 227 ~~~~ 230 (529)
T KOG2227|consen 227 FSSL 230 (529)
T ss_pred HHHH
Confidence 7666
No 285
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.83 E-value=0.012 Score=49.33 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.++|.++|.+|+||||.+..+.....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999999888876664
No 286
>PRK12377 putative replication protein; Provisional
Probab=95.83 E-value=0.021 Score=47.10 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=30.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
+..-+.++|.+|+|||+||..+.+....+ .-.+++++++
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~ 138 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP 138 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH
Confidence 44678999999999999999999988632 3446777775
No 287
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.82 E-value=0.0074 Score=48.46 Aligned_cols=25 Identities=36% Similarity=0.767 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++|+|.|-||+||||++.++-.-..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la 25 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALA 25 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHH
Confidence 4799999999999998888766554
No 288
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.82 E-value=0.012 Score=54.08 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=24.7
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+++.+|+|.|..|+|||||++.+....
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 4567899999999999999999998764
No 289
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.82 E-value=0.0085 Score=48.43 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-..++|+|+.|+|||||...+..-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45688999999999999999987444
No 290
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.81 E-value=0.0072 Score=46.25 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
-|.|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988765
No 291
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.81 E-value=0.05 Score=46.55 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 157 RSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 157 r~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.......++.++.. .+-|-+.|.+|+||||+++.+.....
T Consensus 50 ~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 50 DKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 33445556666643 34589999999999999999988775
No 292
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.81 E-value=0.024 Score=48.10 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=28.6
Q ss_pred HHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 162 NNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 162 ~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+++.+. .....+|+|+|.+|+|||||+..+.....
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444443 35688999999999999999999887654
No 293
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.81 E-value=0.0081 Score=45.23 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
|.|+|.+|+|||||+..+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998764
No 294
>PLN02924 thymidylate kinase
Probab=95.80 E-value=0.032 Score=45.16 Aligned_cols=54 Identities=7% Similarity=0.051 Sum_probs=37.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADK 227 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~ 227 (250)
...|+|-|..|+||||+++.+.+....+ .+....+=..+......+.++.++..
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~~ 69 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLSN 69 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHhC
Confidence 4589999999999999999999998754 45544332222234466666666553
No 295
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.80 E-value=0.015 Score=52.81 Aligned_cols=48 Identities=29% Similarity=0.396 Sum_probs=37.5
Q ss_pred cCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+.|.+..++.+.+.+. . ..++-+-++|++|+|||++|+.+++...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 3457788888888877654 1 1345578999999999999999999874
No 296
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.79 E-value=0.011 Score=43.47 Aligned_cols=27 Identities=48% Similarity=0.661 Sum_probs=18.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcCCCCCC
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFGRDQFFD 204 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~v~~~Fd 204 (250)
+-++|.+|+||||+|+.+..... ..|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--Ccee
Confidence 46899999999999999998876 3464
No 297
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.79 E-value=0.0086 Score=47.92 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 298
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.79 E-value=0.0072 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.++|.+|+|||||+..+.++.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999988654
No 299
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.79 E-value=0.016 Score=46.94 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCCcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 036637 148 NKDYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEI 224 (250)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i 224 (250)
|....+++|-++..+.+--...+.+..-+-|.||+|+||||-+..+.+..--...=+.+.=...|..-.+.-+-..|
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH
Confidence 33456789999888887777677788888999999999999776665554332222445556666665554444333
No 300
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.78 E-value=0.0069 Score=45.32 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999876
No 301
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.78 E-value=0.0088 Score=47.52 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
++...|+|+|.+|+|||||...+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 456788999999999999999998775
No 302
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.78 E-value=0.0095 Score=44.89 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..+|+++|..|+|||||+..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998754
No 303
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.014 Score=54.53 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=40.0
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..+..|.+++..+.+ +.+-++|..|+||||+|+.+.+..
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445789999999999998886654 578999999999999999887653
No 304
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.77 E-value=0.018 Score=45.07 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
....|.|+|.+|+|||||+..+.++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455699999999999999998863
No 305
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.77 E-value=0.0087 Score=48.12 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998754
No 306
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.76 E-value=0.008 Score=50.32 Aligned_cols=24 Identities=33% Similarity=0.735 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|+|.|..|+|||||++.+..-..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999987653
No 307
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.76 E-value=0.009 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|.++|.+|+|||||+..+++...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~~ 25 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGKF 25 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCcC
Confidence 68999999999999999987753
No 308
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.75 E-value=0.0096 Score=50.46 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=24.3
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+++.++|++.|-||+||||.+-.+..-..
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La 31 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMA 31 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHH
Confidence 56789999999999999998888665553
No 309
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.75 E-value=0.009 Score=47.10 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+|+|-|+.|+||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999864
No 310
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.74 E-value=0.034 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+.++.++|.+|+||||.+..+....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 347899999999999999988877664
No 311
>PRK10867 signal recognition particle protein; Provisional
Probab=95.74 E-value=0.033 Score=49.60 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+.+|.++|.+|+||||.+..+.....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999997777765543
No 312
>PRK14531 adenylate kinase; Provisional
Probab=95.74 E-value=0.013 Score=45.93 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..|.|+|++|+||||+++.+......
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35889999999999999999888753
No 313
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.74 E-value=0.0093 Score=46.95 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44588999999999999999998654
No 314
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.73 E-value=0.0091 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.|+|.+|+|||||+..+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999987655
No 315
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.73 E-value=0.0095 Score=45.44 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
|.++|..|+|||||...+...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 689999999999999998653
No 316
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.73 E-value=0.0083 Score=50.33 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++|+|+|-||+||||++-++-.-..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La 26 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALA 26 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999988776664
No 317
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.73 E-value=0.0091 Score=44.38 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
-|+++|.+|+|||||+..+.....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~~ 26 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNKF 26 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987763
No 318
>PTZ00494 tuzin-like protein; Provisional
Probab=95.73 E-value=0.072 Score=47.40 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=56.8
Q ss_pred CcCCCcChHHHHHHHHHH---hcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 036637 150 DYEAFESRSSTLNNVLRA---LQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~---L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
....++.|+.+-..+-+. +...+++++.+.|.-|+||++|.+..-..+.+- .++|.|..+ ++-+++|.+
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHHHHHH
Confidence 445677777654444443 335689999999999999999999988887754 667777764 566889999
Q ss_pred HhCCCC
Q 036637 227 KLGLIF 232 (250)
Q Consensus 227 ~l~~~~ 232 (250)
.||.+.
T Consensus 441 ALgV~n 446 (664)
T PTZ00494 441 ALGVSN 446 (664)
T ss_pred HhCCCC
Confidence 998873
No 319
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.72 E-value=0.0094 Score=46.51 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
.-.+++|+|..|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456889999999999999999864
No 320
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.72 E-value=0.0091 Score=45.20 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+++++|.+|+||||++..+.....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~ 24 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALR 24 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999887653
No 321
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.71 E-value=0.012 Score=46.87 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..|+|.|..|+|||||.+.+.+...
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 322
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.71 E-value=0.013 Score=50.15 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+..+|.++|++|+||||++..+.....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3578999999999999999999887765
No 323
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.70 E-value=0.0072 Score=45.70 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|+++|.+|+|||||+..+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998775
No 324
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.70 E-value=0.018 Score=45.12 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=27.3
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 161 LNNVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 161 ~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
+.+++.++.. +....|.++|.+|+|||||+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 4566675532 44566789999999999999998764
No 325
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.70 E-value=0.037 Score=45.06 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=39.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
...++.|+|.+|+|||||+.++...--. +=..++|++..++ +.++++++ ++++.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~-~~~g~~ 78 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM-ESVKID 78 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH-HHCCCC
Confidence 4678899999999999999998544321 1247889999775 45666653 556544
No 326
>PRK14529 adenylate kinase; Provisional
Probab=95.70 E-value=0.048 Score=44.18 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcC
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
|.|.|++|+||||+++.+......
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 788999999999999999988864
No 327
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.70 E-value=0.0087 Score=50.04 Aligned_cols=25 Identities=36% Similarity=0.752 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++|+|+|-||+||||++.++-.-..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La 26 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALS 26 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999988776553
No 328
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.69 E-value=0.011 Score=44.91 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.++|.+|+|||||+..+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999988765
No 329
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.69 E-value=0.02 Score=44.35 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=29.0
Q ss_pred cChHHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 155 ESRSSTLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 155 ~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+|.+..+.++++.+. .....-|-|+|-.|+||+.+|+.|++.-
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 565556666666554 2333555699999999999999999843
No 330
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.68 E-value=0.0088 Score=49.72 Aligned_cols=25 Identities=36% Similarity=0.760 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++|+|.|-||+||||++.++..-..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La 26 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALA 26 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 5789999999999999998776664
No 331
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.68 E-value=0.0086 Score=45.64 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999998876543
No 332
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.68 E-value=0.016 Score=45.48 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 160 TLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+...++.+.... -..+.|+|..|+|||||++.+..-.
T Consensus 13 ~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 13 LQAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344555544443 5688999999999999999988654
No 333
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.67 E-value=0.0092 Score=45.11 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=18.2
Q ss_pred EEEEccCCCCHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~ 194 (250)
|+++|..|+|||||.+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6899999999999999999
No 334
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.67 E-value=0.012 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+|-++|.+|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998765
No 335
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.011 Score=46.12 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998553
No 336
>PRK15453 phosphoribulokinase; Provisional
Probab=95.65 E-value=0.014 Score=48.78 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+|+|.|.+|+||||+++.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999887544
No 337
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.65 E-value=0.0095 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.++|.+|+|||||++.+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998654
No 338
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.01 Score=48.37 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44688999999999999999998654
No 339
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.64 E-value=0.074 Score=45.39 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHHHhcCCC--CC---CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 160 TLNNVLRALQD---PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ--FF---DQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 160 ~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~--~F---d~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
-.+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+..+... .+ ..-.|-.-+..--...++..|..+++..
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~~ 83 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEKH 83 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHHh
Confidence 34556666664 5788999999999999999999998887541 11 1223333333334566677777777544
No 340
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.64 E-value=0.029 Score=50.42 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=39.6
Q ss_pred CCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCC
Q 036637 152 EAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFD 204 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd 204 (250)
..++|++..++.+...+..++ -+-+.|.+|+|||+||+.+.....-...|.
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 367899999998888876443 346899999999999999998665433454
No 341
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.64 E-value=0.047 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|+|.|..|+||||+++.+.....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999998886654
No 342
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.63 E-value=0.045 Score=44.39 Aligned_cols=54 Identities=28% Similarity=0.286 Sum_probs=35.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGL 230 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~ 230 (250)
.-..+.|.|.+|+|||||+.++....-. .-+..+|++...++ ..+.+. +.+++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~~~--~~i~~~-~~~~g~ 72 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEESR--ESIIRQ-AAQFGM 72 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccCCH--HHHHHH-HHHhCC
Confidence 4578899999999999999986644321 23467888875543 444433 444443
No 343
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.62 E-value=0.017 Score=45.00 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=29.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQG 222 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~ 222 (250)
+.|.|.+|+|||+|+.++....-. .. ..++|++...+ ..++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g-~~v~~~s~e~~--~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RG-EPGLYVTLEES--PEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CC-CcEEEEECCCC--HHHHHH
Confidence 578999999999999987655431 11 35778877654 444443
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.62 E-value=0.011 Score=46.27 Aligned_cols=28 Identities=39% Similarity=0.460 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+.-.+++|+|..|+|||||++.+..-..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3456899999999999999999987543
No 345
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.62 E-value=0.026 Score=52.21 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=33.5
Q ss_pred CCcChHHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 153 AFESRSSTLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..+.|.+-.+.|.++.- .....+|.++|+.|+||||+++.+......
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34445554554444433 345669999999999999999999987753
No 346
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.61 E-value=0.011 Score=48.49 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44689999999999999999998654
No 347
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.011 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998754
No 348
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.61 E-value=0.015 Score=45.55 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|.+.|.+|+||||+++.+.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5567999999999999999999997764
No 349
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.61 E-value=0.013 Score=47.30 Aligned_cols=25 Identities=44% Similarity=0.666 Sum_probs=22.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999997665
No 350
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.61 E-value=0.035 Score=48.49 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH--HHHHHHHhCCCCC
Q 036637 160 TLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKI--QGEIADKLGLIFF 233 (250)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l--~~~i~~~l~~~~~ 233 (250)
-.+.+++.+.......+.|.|.||.|||+|.+.+.+..+.. -+ .+-++.+.......| -..+-+.++++..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~--~~-~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR--GK-KVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc--cc-eEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 45666677777777888999999999999999999888643 22 233333333333333 2455555666644
No 351
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.59 E-value=0.011 Score=47.59 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999754
No 352
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.012 Score=47.20 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.. .+++|+|..|+|||||++.+..-.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999999998654
No 353
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.59 E-value=0.013 Score=46.06 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+.|.++|+.|+||+||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998774
No 354
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.011 Score=47.62 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 355
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.58 E-value=0.011 Score=47.33 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 356
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.58 E-value=0.012 Score=46.63 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44588999999999999999998764
No 357
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.011 Score=48.26 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998653
No 358
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.57 E-value=0.56 Score=40.40 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=29.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH 213 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~ 213 (250)
..-+-++|..|+|||+||..|.+..-.++ -.++|++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~ 221 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADE 221 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHH
Confidence 36789999999999999999998875332 2566776643
No 359
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.57 E-value=0.013 Score=44.33 Aligned_cols=21 Identities=48% Similarity=0.672 Sum_probs=19.4
Q ss_pred EEccCCCCHHHHHHHHHHHhc
Q 036637 178 IYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 178 I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|+|++|+||||+++.+.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999999875
No 360
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.57 E-value=0.01 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.|.|+|.+|+|||||+..+.++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887754
No 361
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.021 Score=52.98 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=40.0
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..++.|.+++..+. .+-+-++|..|+||||+|+.+.+..
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45578999999999999888655 4578899999999999999987654
No 362
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.56 E-value=0.013 Score=46.93 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67999999999999999987664
No 363
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.021 Score=52.81 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=40.2
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+++.+..+ +.+-++|..|+||||+|+.+.+...
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445788999999999999886654 5678999999999999998886643
No 364
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.55 E-value=0.025 Score=49.85 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=37.6
Q ss_pred CCCcChHHHHHHHHHHhcCC----------CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 152 EAFESRSSTLNNVLRALQDP----------DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~~----------~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..++|.+..++.|.+++..+ -.+-+-++|+.|+||||+|+.+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999988754 25668899999999999999876543
No 365
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.55 E-value=0.012 Score=47.70 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998764
No 366
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.044 Score=45.90 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=40.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQG 222 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~ 222 (250)
.-+++=|.|..|+||||+|-+++-..+-. -..++|+..-+.++++.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH
Confidence 34677799999999999999988777643 44899999999999887653
No 367
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.012 Score=47.19 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998653
No 368
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.54 E-value=0.011 Score=48.79 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=37.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEE--cCC--CCCHHHHHHHHHHHhCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVE--VPH--IPDIRKIQGEIADKLGLIF 232 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~--vs~--~~~~~~l~~~i~~~l~~~~ 232 (250)
.-.++++||-.|+|||||++.+..-.+-. +..+.|=- +.. .....+-..++++.+|++.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~ 100 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKDITKLSKEERRERVLELLEKVGLPE 100 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCH
Confidence 56789999999999999999998766522 22222210 111 2234445667778878664
No 369
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.54 E-value=0.025 Score=48.28 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....|.++|+.|+||||+++.+.....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999986653
No 370
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.54 E-value=0.012 Score=47.70 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++.-.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45799999999999999999999764
No 371
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.54 E-value=0.012 Score=46.91 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++.-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999998754
No 372
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.54 E-value=0.012 Score=47.14 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999998764
No 373
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.53 E-value=0.015 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..-|.|+|.+|+|||||+..+.+.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 356789999999999999998654
No 374
>PRK04328 hypothetical protein; Provisional
Probab=95.53 E-value=0.034 Score=45.90 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=37.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGL 230 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~ 230 (250)
.-.++-|.|.+|+|||+|+.++...-- ..-..++|++...++ .++.+ .+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~~--~~i~~-~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEHP--VQVRR-NMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCCH--HHHHH-HHHHcCC
Confidence 457889999999999999998654432 124578999987754 34433 3455554
No 375
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.53 E-value=0.015 Score=50.47 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=26.4
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..+..++|||++|+|||.+|+.|++...+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 56789999999999999999999999865
No 376
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.011 Score=47.35 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+++|+|..|+|||||++.++.-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 88999999999999999998653
No 377
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.53 E-value=0.011 Score=47.42 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998754
No 378
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.51 E-value=0.015 Score=46.79 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.|.|++|+||||+++.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987765
No 379
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.51 E-value=0.013 Score=47.34 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++.-.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 380
>PRK02496 adk adenylate kinase; Provisional
Probab=95.51 E-value=0.014 Score=45.67 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.|.|++|+||||+++.+.....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 381
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.18 Score=47.11 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=39.5
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..++.|..++..+.+ +.+-++|..|+||||+|+.+-...
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 345788999999999999887655 568899999999999998876654
No 382
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.51 E-value=0.033 Score=44.37 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=31.0
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHH
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
...++|.+..+..+.-.... .+=+-++|.+|+|||+||+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 35678888777776655544 45778999999999999998764
No 383
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.50 E-value=0.012 Score=43.71 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.++|.+|+|||||+..+.+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 47899999999999999987654
No 384
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=95.50 E-value=0.013 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.|+|.+|+|||||...+.+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988764
No 385
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.49 E-value=0.014 Score=46.95 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999999654
No 386
>PRK14528 adenylate kinase; Provisional
Probab=95.49 E-value=0.018 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+.|.|.|++|+||||+++.+.....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999987664
No 387
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.013 Score=47.26 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999998753
No 388
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.48 E-value=0.013 Score=47.84 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998654
No 389
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.48 E-value=0.013 Score=44.89 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|.++|.+|+|||||+..+.++..
T Consensus 4 i~liG~~~~GKTsli~~~~~~~~ 26 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNVF 26 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 78999999999999999876554
No 390
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.47 E-value=0.014 Score=43.81 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.|-++|..|+|||||++.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999988766
No 391
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.47 E-value=0.013 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999988765
No 392
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.013 Score=47.92 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 393
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.44 E-value=0.017 Score=50.84 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+-+|+|.|..|+|||||++.+..-.+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999975554
No 394
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.44 E-value=0.013 Score=45.00 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-..|+|.|+.|+||+||.+.|++-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34568999999999999999999754
No 395
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.44 E-value=0.014 Score=46.57 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998754
No 396
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.014 Score=47.60 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 397
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.44 E-value=0.024 Score=44.31 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=24.7
Q ss_pred HHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 163 NVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 163 ~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.+.+.+......-|.++|.+|+|||||+..+...
T Consensus 7 ~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~ 40 (182)
T PTZ00133 7 SAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLG 40 (182)
T ss_pred HHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Confidence 3444444444455789999999999999998653
No 398
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.43 E-value=0.012 Score=49.21 Aligned_cols=24 Identities=42% Similarity=0.733 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
++|+|.|-||+||||++-++-.-.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 589999999999999988876655
No 399
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.43 E-value=0.012 Score=49.12 Aligned_cols=25 Identities=40% Similarity=0.743 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++|+|.|-||+||||++.++..-..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6899999999999999998665553
No 400
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.43 E-value=0.013 Score=47.37 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+....
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 401
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.43 E-value=0.031 Score=43.45 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=27.8
Q ss_pred HHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 163 NVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 163 ~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+++.+.. ..-..|.+.|+.|+||||+...+.+..
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~ 38 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGE 38 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSS
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhcc
Confidence 45566664 566678999999999999999998654
No 402
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.014 Score=48.37 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 403
>COG4240 Predicted kinase [General function prediction only]
Probab=95.41 E-value=0.062 Score=43.36 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=40.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKL 228 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l 228 (250)
+.+-+++|.|.-|+||||++..+++...-+.. ..++..++..=+-...-+-.+++|+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~ 104 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQV 104 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhc
Confidence 45789999999999999999999999876643 4566665554443334444455554
No 404
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.41 E-value=0.014 Score=46.41 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34688999999999999999998654
No 405
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.41 E-value=0.012 Score=44.99 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.0
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
|+|+|..|+|||||++.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999753
No 406
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.41 E-value=0.014 Score=47.26 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45688999999999999999999764
No 407
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.41 E-value=0.014 Score=47.02 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999988654
No 408
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.40 E-value=0.011 Score=44.80 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.|+|.+|+|||||+..+.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999988765
No 409
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.40 E-value=0.024 Score=47.24 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 156 SRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 156 gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|...+..+.+..+....-++|.|.|..|+||||++..+.+..
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 433333344444555666789999999999999999775443
No 410
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.39 E-value=0.014 Score=48.04 Aligned_cols=26 Identities=42% Similarity=0.648 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 411
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.39 E-value=0.014 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.|.++|.+|+|||||.+.+.+..
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~ 25 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999887654
No 412
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.39 E-value=0.016 Score=44.88 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.|+|.+|+|||||+..+.+..
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~ 25 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGH 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999987543
No 413
>PRK07429 phosphoribulokinase; Provisional
Probab=95.37 E-value=0.018 Score=49.42 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+.+-+|+|.|..|+||||+++.+..-..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 4567999999999999999999997654
No 414
>PRK13976 thymidylate kinase; Provisional
Probab=95.37 E-value=0.051 Score=43.64 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=32.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCC-CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRD-QFFDQVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~-~~Fd~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
.|+|-|.-|+||||+++.+++..+.. +...+ ++..-+......+.++.++.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v-~~~~eP~~~~~g~~ir~~l~ 53 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNV-VLTREPGGTSFNELVRGLLL 53 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcce-EEeeCCCCCHHHHHHHHHHc
Confidence 47899999999999999999888643 21222 23322223335555555543
No 415
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.37 E-value=0.017 Score=45.77 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..|+|+|+.|+||||+++.+.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~ 25 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK 25 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999988764
No 416
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.015 Score=47.33 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998664
No 417
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.36 E-value=0.018 Score=45.20 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.2
Q ss_pred cCCCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 169 QDPDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 169 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..+...-|+|+|.+|+|||||+..+++.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3456677999999999999999999975
No 418
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.36 E-value=0.015 Score=44.03 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~ 195 (250)
+|+|+|.+|+|||||...+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 789999999999999999874
No 419
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.35 E-value=0.031 Score=50.21 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=39.7
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..+..|.+++..+.+ +.+-++|..|+||||+|+.+.+..
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 445788999999999998876654 678899999999999999887654
No 420
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.031 Score=51.98 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=39.9
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|..++....+ +.+-++|..|+||||+|+.+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345788999999999888876544 5678999999999999999887653
No 421
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.35 E-value=0.015 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-.+++|+|..|+|||||++.+..-.
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4588999999999999999998664
No 422
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.34 E-value=0.016 Score=46.49 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999999764
No 423
>PRK13974 thymidylate kinase; Provisional
Probab=95.34 E-value=0.064 Score=43.09 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=34.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCC---eEEEEEcCCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFD---QVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd---~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
.+|++.|..|+||||+++.++......+... .++...-+......+.+++++.
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~ 59 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLL 59 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHc
Confidence 5799999999999999999998876443321 1222222223345666666654
No 424
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.34 E-value=0.014 Score=47.58 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 44689999999999999999998653
No 425
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.34 E-value=0.015 Score=47.32 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.-.+++|+|..|+|||||++.++.-..
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456889999999999999999997654
No 426
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.33 E-value=0.039 Score=48.20 Aligned_cols=48 Identities=27% Similarity=0.234 Sum_probs=39.3
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..++.|.+.+..+. .+.+-++|+.|+||+|+|..+-...
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999888665 4568899999999999997755544
No 427
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.33 E-value=0.03 Score=42.63 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...++++|++|+|||||...+..+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 45678999999999999999987554
No 428
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.33 E-value=0.025 Score=54.02 Aligned_cols=48 Identities=31% Similarity=0.364 Sum_probs=36.9
Q ss_pred cCCCcChHHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQD-------------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..++.|.+..++.+.+++.. ...+-+-++|.+|+||||||+.+.+...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 34577888888887776531 2345678999999999999999998764
No 429
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.32 E-value=0.035 Score=48.52 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhc---CCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 157 RSSTLNNVLRALQ---DPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 157 r~~~~~~l~~~L~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..++++.+...+. .....+|+|+|..|+|||||+..+....+.
T Consensus 186 TpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~ 231 (366)
T PRK14489 186 TPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIA 231 (366)
T ss_pred CHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3455666555432 225779999999999999999999987754
No 430
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.32 E-value=0.026 Score=49.68 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHH-HHHHHHhcCCCCCCeEEEEEcC---CCCCHHHHHHHHHHHhCC
Q 036637 157 RSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLA-KEVAIQFGRDQFFDQVIFVEVP---HIPDIRKIQGEIADKLGL 230 (250)
Q Consensus 157 r~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~v~~~Fd~~~wv~vs---~~~~~~~l~~~i~~~l~~ 230 (250)
|.+..+.|..||.+..-..|.|.|+-|+||+.|+ .++.++.+- +..+... ..-+-..+++.++.|+|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 3456788999999888889999999999999999 777766542 3444333 234677888888888875
No 431
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.32 E-value=0.13 Score=40.42 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=27.9
Q ss_pred HHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 163 NVLRALQDPDV-NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 163 ~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.+.+..+.+ +.+-++|..|+||||+|+.+-+...
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 45555555555 6788999999999999998877764
No 432
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.31 E-value=0.015 Score=50.26 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
-..+++.|+.|+|||||.+.|.--..-
T Consensus 31 Gef~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 367899999999999999999865543
No 433
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.30 E-value=0.014 Score=44.52 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=17.5
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~ 195 (250)
|.++|.+|+|||||......
T Consensus 3 i~vvG~~gvGKTsli~~~~~ 22 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLT 22 (158)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999987643
No 434
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=95.30 E-value=0.015 Score=48.26 Aligned_cols=26 Identities=38% Similarity=0.764 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
++|+|.|-||+||||++.++......
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~ 28 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSN 28 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 68999999999999999998876653
No 435
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.29 E-value=0.014 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=19.1
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998865
No 436
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.29 E-value=0.016 Score=47.06 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998653
No 437
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.016 Score=47.43 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.-.+++|+|..|+|||||++.+..-..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999987643
No 438
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.28 E-value=0.017 Score=47.61 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
+.++.+|+|..|+|||||+..++.-
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999733
No 439
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.27 E-value=0.016 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-|.++|.+|+|||||...+....
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~ 26 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR 26 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999987654
No 440
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.27 E-value=0.03 Score=45.28 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=28.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEV 211 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~v 211 (250)
....+-|+|..|+|||.|++.+++.......=..++|++.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 3456889999999999999999998753222124556643
No 441
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.27 E-value=0.016 Score=47.40 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.-.+++|+|..|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468899999999999999999875
No 442
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.26 E-value=0.016 Score=44.25 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.|+|.+|+|||||...+.+..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~ 26 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDT 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987654
No 443
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.26 E-value=0.024 Score=48.71 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=33.5
Q ss_pred CcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHH
Q 036637 154 FESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKE 192 (250)
Q Consensus 154 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~ 192 (250)
+-+|..+-.--+++|+++++..+++.|.+|.|||-||-.
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALa 264 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALA 264 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHH
Confidence 445677777788999999999999999999999998764
No 444
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.017 Score=45.58 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.-.+++|+|..|+|||||++.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 445
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.26 E-value=0.017 Score=45.82 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.-.+++|+|..|+|||||++.+.....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 556889999999999999999987653
No 446
>PRK10908 cell division protein FtsE; Provisional
Probab=95.25 E-value=0.017 Score=46.63 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55788999999999999999998654
No 447
>PRK09183 transposase/IS protein; Provisional
Probab=95.25 E-value=0.016 Score=48.08 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+.|+|.+|+|||+||..+.+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999977643
No 448
>PRK06851 hypothetical protein; Provisional
Probab=95.25 E-value=0.044 Score=47.68 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=32.9
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPH 213 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~ 213 (250)
...-+++.|.|.+|+|||||++.+.+....+ .|+...+.|-+.
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~-g~~Ve~~~~~~d 69 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEK-GYDVEFLHCSSD 69 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEcCCC
Confidence 4567899999999999999999999888643 466555554443
No 449
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.25 E-value=0.017 Score=46.07 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45688999999999999999998643
No 450
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.25 E-value=0.017 Score=46.22 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 451
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.25 E-value=0.032 Score=47.12 Aligned_cols=35 Identities=29% Similarity=0.509 Sum_probs=27.7
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 164 VLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 164 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++..+.. ..+-+|.|.|..|+||||+|..+.+...
T Consensus 82 ~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 82 LWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLG 117 (301)
T ss_pred HHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444443 4567899999999999999999998774
No 452
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=95.24 E-value=0.017 Score=44.05 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=17.7
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~ 195 (250)
|.|+|.+|+|||||+....+
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999977754
No 453
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.24 E-value=0.015 Score=48.35 Aligned_cols=23 Identities=39% Similarity=0.949 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+|++.|-||+||||++.++-.-.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~L 24 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAF 24 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHH
Confidence 58888999999999888866544
No 454
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.036 Score=50.30 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=38.8
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..+..|.+++.... .+..-++|..|+||||+|+.+....
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44567899999999999888654 4556789999999999999877654
No 455
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.017 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|.|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998654
No 456
>PRK07933 thymidylate kinase; Validated
Probab=95.24 E-value=0.057 Score=43.46 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
.|+|-|+-|+||||+++.+.+..+.+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~ 27 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEAR 27 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999988754
No 457
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.23 E-value=0.018 Score=46.04 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998764
No 458
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.22 E-value=0.081 Score=50.41 Aligned_cols=54 Identities=28% Similarity=0.267 Sum_probs=41.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIFF 233 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~~ 233 (250)
-+++-|.|.+|+|||||+-+++-...- .=..++|+...++++.. .++++|++.+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~--~G~~v~yId~E~t~~~~-----~A~~lGvDl~ 113 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQA--AGGVAAFIDAEHALDPD-----YAKKLGVDTD 113 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchhHH-----HHHHcCCChh
Confidence 567789999999999999876654432 22568999999888853 7788888743
No 459
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.22 E-value=0.019 Score=44.50 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45688999999999999999999764
No 460
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.22 E-value=0.018 Score=45.60 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998764
No 461
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.22 E-value=0.013 Score=44.45 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.5
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
|.|+|.+|+|||||+..+.++
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999988643
No 462
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.21 E-value=0.017 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
++++|+|..|+|||||++.++.
T Consensus 23 g~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999873
No 463
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.21 E-value=0.017 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~ 195 (250)
+|+|+||.|+||+|.|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999998743
No 464
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.21 E-value=0.06 Score=44.57 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=30.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
...=+.++|.+|+|||.||..+.+..- +..+. +.+++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEEEHH
Confidence 666789999999999999999999987 44344 5556554
No 465
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.21 E-value=0.018 Score=47.82 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 466
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.20 E-value=0.018 Score=46.31 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 44688999999999999999998654
No 467
>PHA02244 ATPase-like protein
Probab=95.20 E-value=0.044 Score=47.61 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 160 TLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+..++.. +. -|-++|..|+|||+||+.+.....
T Consensus 108 ~~~ri~r~l~~-~~-PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 108 ETADIAKIVNA-NI-PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHHhc-CC-CEEEECCCCCCHHHHHHHHHHHhC
Confidence 44455554433 33 356799999999999999998754
No 468
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.19 E-value=0.049 Score=48.85 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=29.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCC-eEEEEEcC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFD-QVIFVEVP 212 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd-~~~wv~vs 212 (250)
..-+-|+|..|+|||+|++.+.+.... .+.+ .++|++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~~ 169 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE 169 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEHH
Confidence 456899999999999999999998753 2333 56676643
No 469
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.19 E-value=0.064 Score=44.11 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=34.8
Q ss_pred HHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 160 TLNNVLRALQD--PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
.+..+.++..+ .....+-++|.+|+|||+|+..+.+....+ -..+++++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~~ 136 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITVA 136 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEHH
Confidence 44455554432 234578899999999999999999987533 2355666654
No 470
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.19 E-value=0.018 Score=46.52 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.-.+++|+|..|+|||||++.++....
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999987643
No 471
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.19 E-value=0.018 Score=47.47 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.-.+++|+|..|+|||||++.+..-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999864
No 472
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.19 E-value=0.015 Score=44.62 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
|.++|.+|+|||||++.+.+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998765
No 473
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.18 E-value=0.021 Score=41.29 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=20.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
|.+.|.||+||||++..+.....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~ 24 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLA 24 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999987764
No 474
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.18 E-value=0.019 Score=44.20 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.-.+++|+|..|+|||||++.+..-..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456889999999999999999997653
No 475
>PRK13973 thymidylate kinase; Provisional
Probab=95.18 E-value=0.084 Score=42.43 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=33.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
..|+|-|..|+||||+++.+++.....+ +.++. ..-+......+++++++.
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g-~~~~~-~~~p~~~~~g~~ir~~l~ 54 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAG-YDVLV-TREPGGSPGAEAIRHVLL 54 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCC-CeEEE-EECCCCCchHHHHHHHHc
Confidence 5788999999999999999999886432 33322 222223345666666544
No 476
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.17 E-value=0.019 Score=43.22 Aligned_cols=27 Identities=33% Similarity=0.494 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.-.+++|+|..|.|||||++.+..-..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 456889999999999999999987653
No 477
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.17 E-value=0.024 Score=43.82 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
-|.++||.|+||||+.+.+......
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 4789999999999999999876653
No 478
>PRK08116 hypothetical protein; Validated
Probab=95.16 E-value=0.026 Score=47.09 Aligned_cols=37 Identities=35% Similarity=0.369 Sum_probs=28.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
.-+-++|..|+|||.||..|++....+ -..+++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~ 151 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFP 151 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHH
Confidence 347899999999999999999998543 2356677653
No 479
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=95.16 E-value=0.017 Score=43.83 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.++|.+|+|||||+..+.++.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~ 26 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSY 26 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47899999999999999876543
No 480
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.15 E-value=0.018 Score=44.20 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~ 28 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKR 28 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467999999999999999988653
No 481
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.034 Score=42.94 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=27.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEE
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFV 209 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv 209 (250)
-..+.+.|..|+||+||.+.+|.+.... .-.|||
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v 70 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILV 70 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEE
Confidence 3456899999999999999999999764 346666
No 482
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=95.15 E-value=0.018 Score=43.92 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=17.9
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~ 195 (250)
|.++|.+|+|||||+..+..
T Consensus 3 v~~~G~~~~GKTsli~~l~~ 22 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999843
No 483
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.14 E-value=0.02 Score=44.65 Aligned_cols=26 Identities=42% Similarity=0.565 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999999754
No 484
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.02 Score=44.34 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998754
No 485
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.13 E-value=0.019 Score=47.41 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++.-.
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999754
No 486
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.13 E-value=0.032 Score=45.93 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=38.7
Q ss_pred cCCCcChHHHHH---HHHHHhcC------CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 151 YEAFESRSSTLN---NVLRALQD------PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 151 ~~~~~gr~~~~~---~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.++++|.+..+. -|+++|.+ ..++-|-.+|++|.|||-+|+.+.|..++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence 346788876554 46777774 47889999999999999999999887754
No 487
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=95.13 E-value=0.019 Score=48.42 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~ 194 (250)
...+|.|.|+.|+||||+++.+-
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999999884
No 488
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=95.12 E-value=0.019 Score=43.43 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=32.9
Q ss_pred HHHHHHHHh----cCCCceEEEEEccCCCCHHH--HHHHHHHHhcCCCCCCeEEEEEcCCC
Q 036637 160 TLNNVLRAL----QDPDVNMVGIYGMGGIGKTT--LAKEVAIQFGRDQFFDQVIFVEVPHI 214 (250)
Q Consensus 160 ~~~~l~~~L----~~~~~~vi~I~G~gGvGKTt--La~~v~~~~~v~~~Fd~~~wv~vs~~ 214 (250)
++--|+++| ..++-.+|+|-||+-+|||- .|..||-+.+ |..+|.+
T Consensus 37 eLGlLVDFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAnKr---------W~f~SST 88 (192)
T PF11868_consen 37 ELGLLVDFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCANKR---------WLFLSST 88 (192)
T ss_pred HhccHHHHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcCce---------EEEeeHH
Confidence 444444444 46899999999999999996 5666775543 7777764
No 489
>PRK06526 transposase; Provisional
Probab=95.12 E-value=0.02 Score=47.43 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...-+.++|.+|+|||+||..+.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 344579999999999999999987654
No 490
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.12 E-value=0.018 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.|.++|.+|+|||||...+.+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~ 23 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN 23 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999887654
No 491
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.12 E-value=0.021 Score=43.84 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998654
No 492
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.019 Score=47.22 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44688999999999999999998654
No 493
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.11 E-value=0.026 Score=43.92 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
......|.|+|..|+|||||+..+.+..
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~ 42 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRK 42 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3556678999999999999999998764
No 494
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.11 E-value=0.02 Score=46.76 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 55689999999999999999998654
No 495
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.02 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
.-.+++|+|..|.|||||++.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999999974
No 496
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.10 E-value=0.096 Score=40.54 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=32.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEI 224 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i 224 (250)
+-|.|..|+|||++|.++... .....+++.-.+.++. ++.+.|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI 44 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERI 44 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHH
Confidence 578999999999999998754 2346778877777765 355554
No 497
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=95.10 E-value=0.019 Score=43.84 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.|.++|.+|+|||||+..+.+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~ 24 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK 24 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 498
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.02 Score=47.43 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999999653
No 499
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.09 E-value=0.02 Score=47.07 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999997543
No 500
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.09 E-value=0.018 Score=52.22 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|||-.|+|||||++.+..-.
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999987544
Done!