Query 036637
Match_columns 250
No_of_seqs 128 out of 1612
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.7 2.2E-17 7.7E-22 149.7 11.4 96 155-250 131-241 (549)
2 3qfl_A MLA10; coiled-coil, (CC 99.4 9.8E-13 3.3E-17 94.4 10.1 65 29-93 16-81 (115)
3 3sfz_A APAF-1, apoptotic pepti 99.4 2.6E-13 8.8E-18 133.0 9.1 103 147-249 119-232 (1249)
4 1vt4_I APAF-1 related killer D 99.4 1.2E-13 4E-18 130.8 5.2 75 154-228 130-206 (1221)
5 1z6t_A APAF-1, apoptotic prote 99.3 3.2E-12 1.1E-16 116.7 8.6 101 148-249 120-232 (591)
6 1w5s_A Origin recognition comp 98.8 3.3E-08 1.1E-12 85.8 10.8 98 151-248 21-133 (412)
7 2qby_A CDC6 homolog 1, cell di 98.6 1.7E-07 5.7E-12 80.3 9.5 98 151-248 19-123 (386)
8 2v1u_A Cell division control p 98.5 7.9E-07 2.7E-11 76.1 12.4 98 151-248 18-125 (387)
9 2qby_B CDC6 homolog 3, cell di 98.5 3.8E-07 1.3E-11 78.3 9.3 98 152-249 20-131 (384)
10 2qen_A Walker-type ATPase; unk 98.5 1.8E-07 6E-12 79.2 6.8 72 149-229 9-86 (350)
11 1fnn_A CDC6P, cell division co 98.5 2.1E-06 7.2E-11 73.6 13.4 96 152-248 17-120 (389)
12 2fna_A Conserved hypothetical 98.4 9.5E-07 3.2E-11 74.8 9.7 70 150-228 11-85 (357)
13 2chg_A Replication factor C sm 98.2 7.9E-06 2.7E-10 64.0 8.7 74 150-224 15-89 (226)
14 1jbk_A CLPB protein; beta barr 98.1 4.1E-06 1.4E-10 64.1 6.7 48 150-197 20-67 (195)
15 2p65_A Hypothetical protein PF 98.1 5.8E-06 2E-10 63.1 5.8 48 150-197 20-67 (187)
16 3te6_A Regulatory protein SIR3 98.0 3.1E-05 1.1E-09 65.0 9.4 78 153-230 21-107 (318)
17 1njg_A DNA polymerase III subu 97.9 1.5E-05 5.3E-10 63.1 6.4 49 150-198 21-70 (250)
18 1sxj_B Activator 1 37 kDa subu 97.8 3.3E-05 1.1E-09 64.4 5.8 70 150-220 19-89 (323)
19 1iqp_A RFCS; clamp loader, ext 97.6 8.5E-05 2.9E-09 62.0 5.8 48 150-197 23-70 (327)
20 3h4m_A Proteasome-activating n 97.5 0.00011 3.8E-09 60.2 5.9 49 150-198 15-76 (285)
21 1hqc_A RUVB; extended AAA-ATPa 97.5 0.00038 1.3E-08 58.1 8.3 70 150-224 10-84 (324)
22 3bos_A Putative DNA replicatio 97.5 0.00033 1.1E-08 55.5 7.5 60 151-212 27-89 (242)
23 3pxg_A Negative regulator of g 97.4 0.00022 7.6E-09 63.0 6.2 47 151-197 179-225 (468)
24 1sxj_D Activator 1 41 kDa subu 97.4 0.00016 5.4E-09 61.1 4.7 48 150-197 35-82 (353)
25 3b9p_A CG5977-PA, isoform A; A 97.4 0.00032 1.1E-08 57.8 6.5 49 150-198 19-79 (297)
26 3n70_A Transport activator; si 97.4 0.00018 6.3E-09 53.0 4.5 45 153-197 2-48 (145)
27 2chq_A Replication factor C sm 97.3 0.00026 8.9E-09 58.7 5.8 48 150-197 15-62 (319)
28 1jr3_A DNA polymerase III subu 97.3 0.00039 1.3E-08 59.1 6.5 49 150-198 14-63 (373)
29 3syl_A Protein CBBX; photosynt 97.3 0.00039 1.3E-08 57.6 6.4 47 153-199 32-93 (309)
30 3pvs_A Replication-associated 97.3 0.00057 1.9E-08 60.1 7.6 49 150-198 24-75 (447)
31 1sxj_A Activator 1 95 kDa subu 97.3 0.00037 1.3E-08 62.4 6.2 48 150-197 37-101 (516)
32 3pfi_A Holliday junction ATP-d 97.3 0.00036 1.2E-08 58.7 5.9 49 150-198 27-80 (338)
33 1rz3_A Hypothetical protein rb 97.2 0.00042 1.4E-08 54.0 5.7 41 157-197 3-46 (201)
34 2w58_A DNAI, primosome compone 97.2 0.00057 1.9E-08 53.0 5.9 51 160-212 37-91 (202)
35 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00055 1.9E-08 55.2 6.0 48 151-198 5-64 (262)
36 1sxj_E Activator 1 40 kDa subu 97.2 0.00031 1.1E-08 59.4 4.7 47 150-196 12-59 (354)
37 3cf0_A Transitional endoplasmi 97.2 0.00049 1.7E-08 57.1 5.6 48 151-198 14-74 (301)
38 3d8b_A Fidgetin-like protein 1 97.2 0.00071 2.4E-08 57.6 6.7 49 150-198 82-142 (357)
39 3ec2_A DNA replication protein 97.1 0.00033 1.1E-08 53.4 3.7 42 157-198 19-63 (180)
40 3c8u_A Fructokinase; YP_612366 97.1 0.00067 2.3E-08 53.1 5.6 39 160-198 7-47 (208)
41 1qvr_A CLPB protein; coiled co 97.1 0.00052 1.8E-08 65.2 5.4 48 150-197 168-215 (854)
42 3eie_A Vacuolar protein sortin 97.1 0.0011 3.6E-08 55.6 6.8 49 150-198 16-76 (322)
43 1sxj_C Activator 1 40 kDa subu 97.0 0.00075 2.6E-08 56.9 5.7 48 150-197 23-70 (340)
44 3pxi_A Negative regulator of g 97.0 0.00078 2.7E-08 63.1 6.2 48 150-197 178-225 (758)
45 3lw7_A Adenylate kinase relate 97.0 0.00034 1.2E-08 52.5 3.1 23 174-197 2-24 (179)
46 1r6b_X CLPA protein; AAA+, N-t 97.0 0.00098 3.4E-08 62.4 6.8 79 151-229 185-275 (758)
47 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0011 3.9E-08 55.5 6.3 48 150-197 10-69 (322)
48 1in4_A RUVB, holliday junction 97.0 0.00094 3.2E-08 56.3 5.8 49 150-198 23-76 (334)
49 1lv7_A FTSH; alpha/beta domain 97.0 0.00099 3.4E-08 53.8 5.4 49 150-198 10-70 (257)
50 1ofh_A ATP-dependent HSL prote 96.9 0.00077 2.6E-08 55.6 4.8 47 152-198 15-75 (310)
51 2hf9_A Probable hydrogenase ni 96.9 0.00092 3.1E-08 52.6 5.1 38 161-198 26-63 (226)
52 3kb2_A SPBC2 prophage-derived 96.9 0.00055 1.9E-08 51.4 3.6 24 174-197 2-25 (173)
53 1ly1_A Polynucleotide kinase; 96.9 0.00061 2.1E-08 51.6 3.7 22 174-195 3-24 (181)
54 1qhx_A CPT, protein (chloramph 96.9 0.00062 2.1E-08 51.6 3.7 25 174-198 4-28 (178)
55 1zp6_A Hypothetical protein AT 96.9 0.00061 2.1E-08 52.2 3.7 25 172-196 8-32 (191)
56 3uk6_A RUVB-like 2; hexameric 96.9 0.0012 4.3E-08 55.9 6.0 48 151-198 43-95 (368)
57 3u61_B DNA polymerase accessor 96.9 0.0014 4.8E-08 54.7 6.2 49 150-198 24-73 (324)
58 2cvh_A DNA repair and recombin 96.9 0.0022 7.4E-08 50.1 6.8 53 172-230 19-71 (220)
59 1kgd_A CASK, peripheral plasma 96.9 0.00064 2.2E-08 51.9 3.5 25 173-197 5-29 (180)
60 3vfd_A Spastin; ATPase, microt 96.9 0.0019 6.3E-08 55.6 6.7 49 150-198 113-173 (389)
61 1kag_A SKI, shikimate kinase I 96.9 0.00057 1.9E-08 51.5 3.0 25 174-198 5-29 (173)
62 3vaa_A Shikimate kinase, SK; s 96.9 0.0007 2.4E-08 52.5 3.6 26 172-197 24-49 (199)
63 1n0w_A DNA repair protein RAD5 96.8 0.0045 1.6E-07 49.0 8.5 59 172-231 23-85 (243)
64 3uie_A Adenylyl-sulfate kinase 96.8 0.00084 2.9E-08 52.1 3.9 30 169-198 21-50 (200)
65 2bjv_A PSP operon transcriptio 96.8 0.00094 3.2E-08 54.2 4.2 47 152-198 6-54 (265)
66 2x8a_A Nuclear valosin-contain 96.8 0.0016 5.6E-08 53.3 5.6 47 151-198 9-69 (274)
67 4eun_A Thermoresistant glucoki 96.8 0.0009 3.1E-08 51.9 3.9 28 170-197 26-53 (200)
68 3t61_A Gluconokinase; PSI-biol 96.8 0.00076 2.6E-08 52.4 3.2 25 173-197 18-42 (202)
69 2zan_A Vacuolar protein sortin 96.8 0.0024 8.1E-08 56.0 6.8 48 150-197 132-191 (444)
70 1ixz_A ATP-dependent metallopr 96.8 0.0025 8.7E-08 51.2 6.4 23 176-198 52-74 (254)
71 3asz_A Uridine kinase; cytidin 96.8 0.00096 3.3E-08 52.0 3.8 28 171-198 4-31 (211)
72 2qp9_X Vacuolar protein sortin 96.8 0.0017 5.8E-08 55.2 5.6 49 150-198 49-109 (355)
73 3tr0_A Guanylate kinase, GMP k 96.8 0.00087 3E-08 51.9 3.5 25 173-197 7-31 (205)
74 1nks_A Adenylate kinase; therm 96.7 0.001 3.5E-08 50.9 3.8 25 174-198 2-26 (194)
75 2wsm_A Hydrogenase expression/ 96.7 0.0012 4.2E-08 51.7 4.3 40 158-197 15-54 (221)
76 2rhm_A Putative kinase; P-loop 96.7 0.0012 4.1E-08 50.5 4.1 26 173-198 5-30 (193)
77 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 50.7 3.7 26 173-198 5-30 (185)
78 3co5_A Putative two-component 96.7 0.00048 1.6E-08 50.6 1.7 45 153-197 5-51 (143)
79 1knq_A Gluconate kinase; ALFA/ 96.7 0.0011 3.8E-08 50.1 3.8 25 173-197 8-32 (175)
80 1d2n_A N-ethylmaleimide-sensit 96.7 0.0019 6.6E-08 52.5 5.5 46 153-198 34-89 (272)
81 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0023 7.8E-08 54.3 5.8 42 156-197 3-48 (359)
82 2j41_A Guanylate kinase; GMP, 96.7 0.0012 4.1E-08 51.2 3.8 25 173-197 6-30 (207)
83 3a00_A Guanylate kinase, GMP k 96.7 0.00089 3.1E-08 51.4 3.1 25 174-198 2-26 (186)
84 1odf_A YGR205W, hypothetical 3 96.7 0.0022 7.6E-08 53.0 5.6 28 171-198 29-56 (290)
85 2bdt_A BH3686; alpha-beta prot 96.7 0.0011 3.9E-08 50.7 3.6 22 174-195 3-24 (189)
86 1kht_A Adenylate kinase; phosp 96.7 0.0011 3.9E-08 50.5 3.6 25 174-198 4-28 (192)
87 2r62_A Cell division protease 96.7 0.00089 3.1E-08 54.3 3.1 48 151-198 10-69 (268)
88 1uf9_A TT1252 protein; P-loop, 96.7 0.0013 4.5E-08 50.8 3.9 26 171-196 6-31 (203)
89 2jaq_A Deoxyguanosine kinase; 96.7 0.0012 4E-08 51.0 3.6 24 175-198 2-25 (205)
90 3iij_A Coilin-interacting nucl 96.7 0.0011 3.8E-08 50.3 3.5 26 173-198 11-36 (180)
91 2qor_A Guanylate kinase; phosp 96.7 0.0011 3.8E-08 51.6 3.4 26 172-197 11-36 (204)
92 1l8q_A Chromosomal replication 96.7 0.003 1E-07 52.8 6.3 39 160-198 22-62 (324)
93 2kjq_A DNAA-related protein; s 96.7 0.0016 5.5E-08 48.2 4.2 34 166-199 29-62 (149)
94 2px0_A Flagellar biosynthesis 96.7 0.0045 1.5E-07 51.3 7.3 60 172-232 104-164 (296)
95 1tev_A UMP-CMP kinase; ploop, 96.7 0.0013 4.6E-08 50.2 3.9 26 173-198 3-28 (196)
96 4fcw_A Chaperone protein CLPB; 96.7 0.0027 9.3E-08 52.4 6.0 46 153-198 18-72 (311)
97 1ye8_A Protein THEP1, hypothet 96.7 0.0012 4.1E-08 50.5 3.5 25 175-199 2-26 (178)
98 2yvu_A Probable adenylyl-sulfa 96.7 0.0016 5.6E-08 49.7 4.3 28 171-198 11-38 (186)
99 1iy2_A ATP-dependent metallopr 96.6 0.0037 1.3E-07 51.0 6.6 48 150-198 38-98 (278)
100 2if2_A Dephospho-COA kinase; a 96.6 0.0012 4.1E-08 51.2 3.5 22 174-195 2-23 (204)
101 1g8p_A Magnesium-chelatase 38 96.6 0.0012 4.2E-08 55.5 3.7 49 150-198 22-70 (350)
102 1zuh_A Shikimate kinase; alpha 96.6 0.0014 4.7E-08 49.2 3.7 27 172-198 6-32 (168)
103 3tau_A Guanylate kinase, GMP k 96.6 0.0014 4.8E-08 51.2 3.8 27 171-197 6-32 (208)
104 1ukz_A Uridylate kinase; trans 96.6 0.0017 5.8E-08 50.3 4.3 27 171-197 13-39 (203)
105 1gvn_B Zeta; postsegregational 96.6 0.0025 8.4E-08 52.6 5.4 26 172-197 32-57 (287)
106 4gp7_A Metallophosphoesterase; 96.6 0.00099 3.4E-08 50.5 2.7 23 172-194 8-30 (171)
107 1cke_A CK, MSSA, protein (cyti 96.6 0.0013 4.3E-08 51.9 3.5 24 174-197 6-29 (227)
108 2c95_A Adenylate kinase 1; tra 96.6 0.0015 5.3E-08 50.1 3.8 27 172-198 8-34 (196)
109 1lvg_A Guanylate kinase, GMP k 96.6 0.0011 3.9E-08 51.4 3.1 25 173-197 4-28 (198)
110 3hr8_A Protein RECA; alpha and 96.6 0.0096 3.3E-07 50.6 9.0 53 173-232 61-113 (356)
111 2ze6_A Isopentenyl transferase 96.6 0.0015 5.2E-08 52.8 3.9 25 174-198 2-26 (253)
112 2bbw_A Adenylate kinase 4, AK4 96.6 0.0016 5.4E-08 52.3 3.9 27 172-198 26-52 (246)
113 2i1q_A DNA repair and recombin 96.6 0.0072 2.5E-07 50.5 8.0 59 172-231 97-169 (322)
114 2qt1_A Nicotinamide riboside k 96.5 0.0016 5.4E-08 50.7 3.6 25 172-196 20-44 (207)
115 2z43_A DNA repair and recombin 96.5 0.0078 2.7E-07 50.4 8.1 59 172-231 106-168 (324)
116 1via_A Shikimate kinase; struc 96.5 0.0014 4.8E-08 49.6 3.2 24 175-198 6-29 (175)
117 1y63_A LMAJ004144AAA protein; 96.5 0.0018 6.3E-08 49.5 3.8 25 172-196 9-33 (184)
118 2bwj_A Adenylate kinase 5; pho 96.5 0.0017 5.9E-08 49.9 3.7 26 173-198 12-37 (199)
119 1ojl_A Transcriptional regulat 96.5 0.0023 7.7E-08 53.2 4.6 45 153-197 3-49 (304)
120 3cm0_A Adenylate kinase; ATP-b 96.5 0.0019 6.3E-08 49.2 3.8 25 173-197 4-28 (186)
121 1xjc_A MOBB protein homolog; s 96.5 0.0018 6E-08 49.1 3.6 27 172-198 3-29 (169)
122 1qf9_A UMP/CMP kinase, protein 96.5 0.0019 6.5E-08 49.3 3.8 26 173-198 6-31 (194)
123 4b4t_M 26S protease regulatory 96.5 0.0048 1.6E-07 53.8 6.7 50 150-199 179-241 (434)
124 1jjv_A Dephospho-COA kinase; P 96.5 0.0014 4.9E-08 50.9 3.1 22 174-195 3-24 (206)
125 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.002 6.8E-08 52.3 4.0 24 173-196 4-27 (260)
126 3aez_A Pantothenate kinase; tr 96.5 0.0019 6.5E-08 54.0 4.0 42 171-212 88-129 (312)
127 1uj2_A Uridine-cytidine kinase 96.5 0.0019 6.5E-08 52.1 3.9 29 170-198 19-47 (252)
128 2plr_A DTMP kinase, probable t 96.5 0.0021 7.2E-08 49.9 4.0 27 173-199 4-30 (213)
129 2iyv_A Shikimate kinase, SK; t 96.5 0.0015 5.2E-08 49.7 3.1 25 174-198 3-27 (184)
130 3lda_A DNA repair protein RAD5 96.5 0.0098 3.4E-07 51.4 8.5 59 172-231 177-239 (400)
131 3hws_A ATP-dependent CLP prote 96.5 0.0037 1.3E-07 53.2 5.7 46 153-198 16-76 (363)
132 1znw_A Guanylate kinase, GMP k 96.5 0.0018 6.2E-08 50.5 3.5 26 172-197 19-44 (207)
133 2vli_A Antibiotic resistance p 96.5 0.0014 4.7E-08 49.8 2.7 26 173-198 5-30 (183)
134 1e6c_A Shikimate kinase; phosp 96.4 0.0018 6.1E-08 48.7 3.2 25 174-198 3-27 (173)
135 2cdn_A Adenylate kinase; phosp 96.4 0.0025 8.6E-08 49.3 4.1 27 172-198 19-45 (201)
136 1v5w_A DMC1, meiotic recombina 96.4 0.012 4.2E-07 49.6 8.7 59 172-231 121-183 (343)
137 3fwy_A Light-independent proto 96.4 0.0018 6.2E-08 54.1 3.5 28 171-198 46-73 (314)
138 1pzn_A RAD51, DNA repair and r 96.4 0.0099 3.4E-07 50.4 8.1 59 172-231 130-192 (349)
139 2pbr_A DTMP kinase, thymidylat 96.4 0.0022 7.4E-08 49.1 3.6 23 175-197 2-24 (195)
140 1aky_A Adenylate kinase; ATP:A 96.4 0.0023 7.9E-08 50.3 3.9 27 172-198 3-29 (220)
141 3umf_A Adenylate kinase; rossm 96.4 0.0028 9.7E-08 50.0 4.3 28 171-198 27-54 (217)
142 1z6g_A Guanylate kinase; struc 96.4 0.0017 5.9E-08 51.2 3.1 26 172-197 22-47 (218)
143 3ney_A 55 kDa erythrocyte memb 96.4 0.0024 8.3E-08 49.6 3.8 26 172-197 18-43 (197)
144 1rj9_A FTSY, signal recognitio 96.4 0.0023 7.8E-08 53.3 3.9 27 172-198 101-127 (304)
145 1ex7_A Guanylate kinase; subst 96.4 0.0019 6.6E-08 49.7 3.2 24 174-197 2-25 (186)
146 2jeo_A Uridine-cytidine kinase 96.4 0.0025 8.5E-08 51.1 4.0 27 171-197 23-49 (245)
147 2p5t_B PEZT; postsegregational 96.4 0.003 1E-07 51.0 4.5 27 172-198 31-57 (253)
148 2pt5_A Shikimate kinase, SK; a 96.4 0.0023 8E-08 47.8 3.6 24 175-198 2-25 (168)
149 1um8_A ATP-dependent CLP prote 96.4 0.0045 1.6E-07 52.8 5.9 46 153-198 22-97 (376)
150 4a74_A DNA repair and recombin 96.4 0.01 3.4E-07 46.6 7.5 58 172-230 24-85 (231)
151 1nn5_A Similar to deoxythymidy 96.4 0.0026 9E-08 49.5 4.0 33 172-205 8-40 (215)
152 3tqc_A Pantothenate kinase; bi 96.4 0.0037 1.3E-07 52.4 5.1 27 172-198 91-117 (321)
153 2wwf_A Thymidilate kinase, put 96.4 0.0026 8.7E-08 49.5 3.9 32 173-205 10-41 (212)
154 2grj_A Dephospho-COA kinase; T 96.4 0.003 1E-07 48.9 4.1 27 171-197 10-36 (192)
155 1htw_A HI0065; nucleotide-bind 96.3 0.0027 9.2E-08 47.6 3.6 27 171-197 31-57 (158)
156 4e22_A Cytidylate kinase; P-lo 96.3 0.0024 8.3E-08 51.5 3.7 26 171-196 25-50 (252)
157 4b4t_K 26S protease regulatory 96.3 0.0071 2.4E-07 52.7 6.8 49 151-199 171-232 (428)
158 3tlx_A Adenylate kinase 2; str 96.3 0.0065 2.2E-07 48.7 6.1 27 171-197 27-53 (243)
159 1zd8_A GTP:AMP phosphotransfer 96.3 0.0027 9.4E-08 50.2 3.7 26 173-198 7-32 (227)
160 3t15_A Ribulose bisphosphate c 96.3 0.0029 9.9E-08 52.3 3.9 27 172-198 35-61 (293)
161 4eaq_A DTMP kinase, thymidylat 96.3 0.0078 2.7E-07 47.8 6.3 32 172-205 25-56 (229)
162 2c9o_A RUVB-like 1; hexameric 96.3 0.006 2E-07 53.6 6.1 48 151-198 36-88 (456)
163 4b4t_L 26S protease subunit RP 96.3 0.0069 2.4E-07 52.9 6.4 49 151-199 180-241 (437)
164 2z4s_A Chromosomal replication 96.3 0.0059 2E-07 53.4 6.0 39 160-198 116-155 (440)
165 1s96_A Guanylate kinase, GMP k 96.3 0.0027 9.1E-08 50.2 3.5 27 172-198 15-41 (219)
166 2r44_A Uncharacterized protein 96.3 0.0026 8.9E-08 53.2 3.6 44 152-197 27-70 (331)
167 2z0h_A DTMP kinase, thymidylat 96.3 0.003 1E-07 48.4 3.7 24 175-198 2-25 (197)
168 1gtv_A TMK, thymidylate kinase 96.3 0.0014 4.8E-08 51.1 1.8 25 174-198 1-25 (214)
169 3hu3_A Transitional endoplasmi 96.3 0.0071 2.4E-07 53.7 6.5 47 151-197 203-262 (489)
170 3e70_C DPA, signal recognition 96.2 0.014 4.8E-07 49.0 7.9 59 171-231 127-186 (328)
171 2pez_A Bifunctional 3'-phospho 96.2 0.0031 1.1E-07 47.8 3.6 25 173-197 5-29 (179)
172 2zr9_A Protein RECA, recombina 96.2 0.022 7.4E-07 48.3 9.1 53 172-231 60-112 (349)
173 1vht_A Dephospho-COA kinase; s 96.2 0.0036 1.2E-07 49.1 4.0 23 173-195 4-26 (218)
174 3fb4_A Adenylate kinase; psych 96.2 0.0033 1.1E-07 49.1 3.8 24 175-198 2-25 (216)
175 3p32_A Probable GTPase RV1496/ 96.2 0.0068 2.3E-07 51.5 5.9 37 161-197 65-103 (355)
176 1zak_A Adenylate kinase; ATP:A 96.2 0.0031 1.1E-07 49.6 3.6 26 173-198 5-30 (222)
177 2i3b_A HCR-ntpase, human cance 96.2 0.0026 9E-08 49.1 3.0 25 174-198 2-26 (189)
178 2v54_A DTMP kinase, thymidylat 96.2 0.0034 1.2E-07 48.4 3.7 25 173-197 4-28 (204)
179 2xxa_A Signal recognition part 96.2 0.012 4.1E-07 51.4 7.5 30 171-200 98-127 (433)
180 1m7g_A Adenylylsulfate kinase; 96.2 0.0037 1.3E-07 48.8 3.9 28 171-198 23-50 (211)
181 3dm5_A SRP54, signal recogniti 96.2 0.016 5.4E-07 50.6 8.1 28 172-199 99-126 (443)
182 1sq5_A Pantothenate kinase; P- 96.2 0.0037 1.3E-07 52.0 4.0 28 171-198 78-105 (308)
183 2f6r_A COA synthase, bifunctio 96.2 0.0035 1.2E-07 51.5 3.7 24 171-194 73-96 (281)
184 3b9q_A Chloroplast SRP recepto 96.1 0.0037 1.3E-07 51.9 3.9 27 172-198 99-125 (302)
185 3dl0_A Adenylate kinase; phosp 96.1 0.0037 1.3E-07 48.9 3.7 23 175-197 2-24 (216)
186 2ehv_A Hypothetical protein PH 96.1 0.0032 1.1E-07 50.2 3.3 23 172-194 29-51 (251)
187 4b4t_J 26S protease regulatory 96.1 0.0093 3.2E-07 51.4 6.3 49 151-199 147-208 (405)
188 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0053 1.8E-07 51.3 4.6 51 173-228 123-180 (331)
189 2onk_A Molybdate/tungstate ABC 96.1 0.0036 1.2E-07 50.2 3.5 26 171-197 23-48 (240)
190 4b4t_H 26S protease regulatory 96.1 0.012 4.2E-07 51.5 6.9 49 151-199 208-269 (467)
191 3nwj_A ATSK2; P loop, shikimat 96.1 0.0033 1.1E-07 50.7 3.0 26 173-198 48-73 (250)
192 1xp8_A RECA protein, recombina 96.0 0.03 1E-06 47.7 9.1 52 173-231 74-125 (366)
193 3tif_A Uncharacterized ABC tra 96.0 0.0035 1.2E-07 50.1 3.1 26 172-197 30-55 (235)
194 3lnc_A Guanylate kinase, GMP k 96.0 0.0023 8E-08 50.7 2.1 26 172-197 26-52 (231)
195 3bh0_A DNAB-like replicative h 96.0 0.019 6.4E-07 47.9 7.7 52 172-227 67-118 (315)
196 1np6_A Molybdopterin-guanine d 96.0 0.0045 1.5E-07 47.1 3.5 25 173-197 6-30 (174)
197 2f1r_A Molybdopterin-guanine d 96.0 0.0021 7.1E-08 48.8 1.6 26 174-199 3-28 (171)
198 3ake_A Cytidylate kinase; CMP 96.0 0.0043 1.5E-07 48.0 3.5 24 175-198 4-27 (208)
199 1oix_A RAS-related protein RAB 96.0 0.0044 1.5E-07 47.5 3.5 25 173-197 29-53 (191)
200 2pcj_A ABC transporter, lipopr 96.0 0.0033 1.1E-07 49.9 2.7 26 172-197 29-54 (224)
201 3b85_A Phosphate starvation-in 96.0 0.0033 1.1E-07 49.3 2.7 25 172-196 21-45 (208)
202 3io5_A Recombination and repai 95.9 0.015 5.1E-07 48.5 6.5 55 174-233 29-83 (333)
203 3gmt_A Adenylate kinase; ssgci 95.9 0.022 7.6E-07 45.2 7.2 27 173-199 8-34 (230)
204 2og2_A Putative signal recogni 95.9 0.0054 1.8E-07 52.2 3.9 27 172-198 156-182 (359)
205 1e4v_A Adenylate kinase; trans 95.9 0.0056 1.9E-07 47.9 3.7 24 175-198 2-25 (214)
206 4b4t_I 26S protease regulatory 95.9 0.016 5.6E-07 50.2 6.9 49 151-199 181-242 (437)
207 1vma_A Cell division protein F 95.9 0.0056 1.9E-07 50.9 3.9 28 171-198 102-129 (306)
208 3kl4_A SRP54, signal recogniti 95.9 0.021 7.2E-07 49.8 7.6 28 172-199 96-123 (433)
209 1b0u_A Histidine permease; ABC 95.9 0.0039 1.3E-07 50.7 2.8 26 172-197 31-56 (262)
210 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0048 1.6E-07 49.8 3.3 25 172-196 28-52 (250)
211 3be4_A Adenylate kinase; malar 95.9 0.0056 1.9E-07 48.0 3.6 25 174-198 6-30 (217)
212 2f9l_A RAB11B, member RAS onco 95.9 0.005 1.7E-07 47.4 3.2 25 173-197 5-29 (199)
213 3r20_A Cytidylate kinase; stru 95.9 0.006 2E-07 48.7 3.8 26 173-198 9-34 (233)
214 2xb4_A Adenylate kinase; ATP-b 95.9 0.0057 1.9E-07 48.3 3.6 23 175-197 2-24 (223)
215 2cbz_A Multidrug resistance-as 95.9 0.0047 1.6E-07 49.4 3.2 26 172-197 30-55 (237)
216 3sr0_A Adenylate kinase; phosp 95.9 0.0068 2.3E-07 47.4 4.0 24 175-198 2-25 (206)
217 1moz_A ARL1, ADP-ribosylation 95.9 0.0064 2.2E-07 45.7 3.7 35 161-195 5-40 (183)
218 2ce7_A Cell division protein F 95.8 0.013 4.6E-07 51.7 6.2 48 151-198 15-74 (476)
219 1ji0_A ABC transporter; ATP bi 95.8 0.0042 1.4E-07 49.8 2.8 26 172-197 31-56 (240)
220 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0057 2E-07 54.4 3.9 44 152-197 22-65 (500)
221 2zu0_C Probable ATP-dependent 95.8 0.0052 1.8E-07 50.1 3.3 25 172-196 45-69 (267)
222 1g6h_A High-affinity branched- 95.8 0.0043 1.5E-07 50.3 2.8 26 172-197 32-57 (257)
223 3gfo_A Cobalt import ATP-bindi 95.8 0.0049 1.7E-07 50.5 3.1 26 172-197 33-58 (275)
224 2pze_A Cystic fibrosis transme 95.8 0.0044 1.5E-07 49.3 2.8 26 172-197 33-58 (229)
225 1ltq_A Polynucleotide kinase; 95.8 0.0061 2.1E-07 50.2 3.7 23 174-196 3-25 (301)
226 3m6a_A ATP-dependent protease 95.8 0.011 3.9E-07 53.1 5.7 46 153-198 82-133 (543)
227 2eyu_A Twitching motility prot 95.8 0.0064 2.2E-07 49.4 3.7 27 171-197 23-49 (261)
228 1mv5_A LMRA, multidrug resista 95.8 0.0049 1.7E-07 49.5 2.9 26 172-197 27-52 (243)
229 1zj6_A ADP-ribosylation factor 95.8 0.0091 3.1E-07 45.2 4.3 35 161-196 5-39 (187)
230 1sgw_A Putative ABC transporte 95.8 0.004 1.4E-07 49.0 2.4 26 172-197 34-59 (214)
231 2olj_A Amino acid ABC transpor 95.8 0.0047 1.6E-07 50.3 2.8 26 172-197 49-74 (263)
232 2ff7_A Alpha-hemolysin translo 95.8 0.0048 1.6E-07 49.7 2.8 26 172-197 34-59 (247)
233 1ak2_A Adenylate kinase isoenz 95.8 0.0073 2.5E-07 47.9 3.9 26 173-198 16-41 (233)
234 3d3q_A TRNA delta(2)-isopenten 95.8 0.0069 2.3E-07 51.1 3.8 25 174-198 8-32 (340)
235 2yhs_A FTSY, cell division pro 95.8 0.0069 2.4E-07 53.6 4.0 27 172-198 292-318 (503)
236 3sop_A Neuronal-specific septi 95.7 0.0061 2.1E-07 49.8 3.4 23 175-197 4-26 (270)
237 1u94_A RECA protein, recombina 95.7 0.021 7.1E-07 48.5 6.8 44 172-217 62-105 (356)
238 2dyk_A GTP-binding protein; GT 95.7 0.0076 2.6E-07 44.2 3.7 24 174-197 2-25 (161)
239 4g1u_C Hemin import ATP-bindin 95.7 0.0055 1.9E-07 49.9 3.1 26 172-197 36-61 (266)
240 1fzq_A ADP-ribosylation factor 95.7 0.0098 3.4E-07 45.0 4.4 32 165-196 6-39 (181)
241 2wji_A Ferrous iron transport 95.7 0.0066 2.2E-07 45.2 3.3 23 174-196 4-26 (165)
242 1vpl_A ABC transporter, ATP-bi 95.7 0.005 1.7E-07 49.9 2.8 26 172-197 40-65 (256)
243 1yrb_A ATP(GTP)binding protein 95.7 0.01 3.4E-07 47.7 4.6 27 172-198 13-39 (262)
244 1a7j_A Phosphoribulokinase; tr 95.7 0.0038 1.3E-07 51.6 2.1 27 171-197 3-29 (290)
245 1zu4_A FTSY; GTPase, signal re 95.7 0.0075 2.6E-07 50.5 3.9 28 171-198 103-130 (320)
246 2ce2_X GTPase HRAS; signaling 95.7 0.0066 2.2E-07 44.5 3.2 23 175-197 5-27 (166)
247 2ixe_A Antigen peptide transpo 95.7 0.0051 1.7E-07 50.3 2.8 26 172-197 44-69 (271)
248 2ghi_A Transport protein; mult 95.7 0.0052 1.8E-07 49.9 2.8 26 172-197 45-70 (260)
249 1g41_A Heat shock protein HSLU 95.7 0.008 2.7E-07 52.6 4.1 48 152-199 15-76 (444)
250 1ypw_A Transitional endoplasmi 95.7 0.0049 1.7E-07 58.1 2.9 47 151-197 203-262 (806)
251 3upu_A ATP-dependent DNA helic 95.7 0.015 5.1E-07 51.1 5.8 42 157-199 30-71 (459)
252 1z2a_A RAS-related protein RAB 95.7 0.0071 2.4E-07 44.6 3.3 25 173-197 5-29 (168)
253 2yz2_A Putative ABC transporte 95.7 0.0055 1.9E-07 49.9 2.8 26 172-197 32-57 (266)
254 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0079 2.7E-07 47.1 3.7 53 173-230 23-75 (235)
255 2qi9_C Vitamin B12 import ATP- 95.6 0.0056 1.9E-07 49.4 2.8 26 172-197 25-50 (249)
256 4gzl_A RAS-related C3 botulinu 95.6 0.0084 2.9E-07 46.3 3.7 37 161-197 18-54 (204)
257 2zej_A Dardarin, leucine-rich 95.6 0.0063 2.2E-07 46.1 2.9 21 175-195 4-24 (184)
258 2ihy_A ABC transporter, ATP-bi 95.6 0.0058 2E-07 50.2 2.8 26 172-197 46-71 (279)
259 2wjg_A FEOB, ferrous iron tran 95.6 0.0067 2.3E-07 45.9 3.0 23 174-196 8-30 (188)
260 2nq2_C Hypothetical ABC transp 95.6 0.0058 2E-07 49.4 2.7 26 172-197 30-55 (253)
261 1q3t_A Cytidylate kinase; nucl 95.6 0.0091 3.1E-07 47.4 3.9 26 172-197 15-40 (236)
262 2v9p_A Replication protein E1; 95.6 0.0074 2.5E-07 50.2 3.4 27 171-197 124-150 (305)
263 3con_A GTPase NRAS; structural 95.6 0.0077 2.6E-07 45.7 3.3 24 174-197 22-45 (190)
264 2ocp_A DGK, deoxyguanosine kin 95.6 0.0098 3.3E-07 47.4 4.0 26 173-198 2-27 (241)
265 3end_A Light-independent proto 95.6 0.008 2.8E-07 49.7 3.5 29 170-198 38-66 (307)
266 1f6b_A SAR1; gtpases, N-termin 95.6 0.013 4.4E-07 45.1 4.5 32 164-195 15-47 (198)
267 1ls1_A Signal recognition part 95.5 0.0092 3.2E-07 49.3 3.8 27 172-198 97-123 (295)
268 2dhr_A FTSH; AAA+ protein, hex 95.5 0.022 7.7E-07 50.6 6.5 49 150-198 29-89 (499)
269 1u8z_A RAS-related protein RAL 95.5 0.0085 2.9E-07 44.0 3.3 24 174-197 5-28 (168)
270 2j37_W Signal recognition part 95.5 0.052 1.8E-06 48.2 8.8 27 172-198 100-126 (504)
271 3crm_A TRNA delta(2)-isopenten 95.5 0.0094 3.2E-07 49.9 3.8 24 174-197 6-29 (323)
272 3lv8_A DTMP kinase, thymidylat 95.5 0.025 8.7E-07 45.1 6.2 52 173-225 27-78 (236)
273 1svm_A Large T antigen; AAA+ f 95.5 0.02 6.7E-07 49.1 5.8 28 170-197 166-193 (377)
274 1c1y_A RAS-related protein RAP 95.5 0.0087 3E-07 44.1 3.3 23 175-197 5-27 (167)
275 1r8s_A ADP-ribosylation factor 95.5 0.0093 3.2E-07 43.9 3.4 22 176-197 3-24 (164)
276 3k1j_A LON protease, ATP-depen 95.5 0.014 4.6E-07 53.3 5.1 47 150-198 39-85 (604)
277 3t1o_A Gliding protein MGLA; G 95.5 0.0085 2.9E-07 45.5 3.3 24 173-196 14-37 (198)
278 2ged_A SR-beta, signal recogni 95.5 0.011 3.9E-07 44.8 3.9 26 172-197 47-72 (193)
279 3zvl_A Bifunctional polynucleo 95.4 0.0092 3.1E-07 51.8 3.6 28 170-197 255-282 (416)
280 2vp4_A Deoxynucleoside kinase; 95.4 0.0059 2E-07 48.4 2.2 25 172-196 19-43 (230)
281 1m2o_B GTP-binding protein SAR 95.4 0.01 3.4E-07 45.3 3.5 26 171-196 21-46 (190)
282 2ffh_A Protein (FFH); SRP54, s 95.4 0.03 1E-06 48.6 6.8 57 172-231 97-155 (425)
283 1z08_A RAS-related protein RAB 95.4 0.0096 3.3E-07 44.0 3.2 24 174-197 7-30 (170)
284 2qgz_A Helicase loader, putati 95.4 0.015 5E-07 48.4 4.6 40 159-198 135-177 (308)
285 1j8m_F SRP54, signal recogniti 95.4 0.026 9E-07 46.6 6.1 26 173-198 98-123 (297)
286 1kao_A RAP2A; GTP-binding prot 95.4 0.01 3.4E-07 43.6 3.2 23 175-197 5-27 (167)
287 1p9r_A General secretion pathw 95.4 0.016 5.3E-07 50.4 4.9 35 163-198 158-192 (418)
288 1nlf_A Regulatory protein REPA 95.4 0.0091 3.1E-07 48.7 3.3 44 172-215 29-80 (279)
289 3ld9_A DTMP kinase, thymidylat 95.4 0.023 7.8E-07 45.0 5.4 57 171-227 19-75 (223)
290 2pjz_A Hypothetical protein ST 95.4 0.0079 2.7E-07 48.9 2.8 24 173-196 30-53 (263)
291 1ek0_A Protein (GTP-binding pr 95.4 0.01 3.5E-07 43.8 3.3 23 175-197 5-27 (170)
292 1cr0_A DNA primase/helicase; R 95.4 0.011 3.6E-07 48.7 3.6 54 171-227 33-86 (296)
293 1z0j_A RAB-22, RAS-related pro 95.4 0.01 3.5E-07 43.8 3.2 24 174-197 7-30 (170)
294 1m7b_A RND3/RHOE small GTP-bin 95.4 0.01 3.4E-07 44.9 3.2 25 173-197 7-31 (184)
295 2lkc_A Translation initiation 95.4 0.013 4.3E-07 43.8 3.7 27 171-197 6-32 (178)
296 1ky3_A GTP-binding protein YPT 95.3 0.01 3.6E-07 44.3 3.2 26 172-197 7-32 (182)
297 3fvq_A Fe(3+) IONS import ATP- 95.3 0.0096 3.3E-07 50.6 3.3 26 172-197 29-54 (359)
298 2gj8_A MNME, tRNA modification 95.3 0.0085 2.9E-07 45.0 2.7 24 174-197 5-28 (172)
299 4tmk_A Protein (thymidylate ki 95.3 0.035 1.2E-06 43.5 6.3 52 174-226 4-55 (213)
300 1nij_A Hypothetical protein YJ 95.3 0.0098 3.4E-07 49.7 3.3 26 172-197 3-28 (318)
301 2fn4_A P23, RAS-related protei 95.3 0.011 3.6E-07 44.2 3.2 26 172-197 8-33 (181)
302 2erx_A GTP-binding protein DI- 95.3 0.0088 3E-07 44.2 2.7 24 174-197 4-27 (172)
303 3kta_A Chromosome segregation 95.3 0.012 4.1E-07 44.5 3.5 23 173-195 26-48 (182)
304 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.011 3.8E-07 44.0 3.2 25 173-197 7-31 (177)
305 2nzj_A GTP-binding protein REM 95.3 0.014 4.7E-07 43.4 3.7 25 173-197 4-28 (175)
306 1r2q_A RAS-related protein RAB 95.3 0.011 3.9E-07 43.5 3.3 24 174-197 7-30 (170)
307 3ihw_A Centg3; RAS, centaurin, 95.3 0.011 3.8E-07 44.8 3.2 25 173-197 20-44 (184)
308 1nrj_B SR-beta, signal recogni 95.3 0.014 4.8E-07 45.3 3.9 27 171-197 10-36 (218)
309 1z0f_A RAB14, member RAS oncog 95.3 0.011 3.9E-07 43.9 3.3 25 173-197 15-39 (179)
310 3tui_C Methionine import ATP-b 95.3 0.011 3.6E-07 50.5 3.3 27 171-197 52-78 (366)
311 2bbs_A Cystic fibrosis transme 95.3 0.0089 3E-07 49.3 2.8 26 172-197 63-88 (290)
312 1svi_A GTP-binding protein YSX 95.3 0.012 4.1E-07 44.7 3.4 27 171-197 21-47 (195)
313 1g16_A RAS-related protein SEC 95.3 0.012 4E-07 43.5 3.2 24 174-197 4-27 (170)
314 3q72_A GTP-binding protein RAD 95.2 0.01 3.5E-07 43.7 2.9 21 175-195 4-24 (166)
315 1tq4_A IIGP1, interferon-induc 95.2 0.014 4.8E-07 50.6 4.0 25 171-195 67-91 (413)
316 3foz_A TRNA delta(2)-isopenten 95.2 0.017 5.7E-07 48.0 4.3 27 171-197 8-34 (316)
317 3c5c_A RAS-like protein 12; GD 95.2 0.012 4.1E-07 44.7 3.2 25 173-197 21-45 (187)
318 3jvv_A Twitching mobility prot 95.2 0.014 4.9E-07 49.5 4.0 27 171-197 121-147 (356)
319 3exa_A TRNA delta(2)-isopenten 95.2 0.014 4.8E-07 48.6 3.8 25 173-197 3-27 (322)
320 3dz8_A RAS-related protein RAB 95.2 0.013 4.4E-07 44.6 3.4 25 173-197 23-47 (191)
321 2afh_E Nitrogenase iron protei 95.2 0.012 4.2E-07 48.1 3.5 26 173-198 2-27 (289)
322 3q85_A GTP-binding protein REM 95.2 0.014 4.9E-07 43.0 3.6 21 174-194 3-23 (169)
323 1z47_A CYSA, putative ABC-tran 95.2 0.011 3.9E-07 50.1 3.3 26 172-197 40-65 (355)
324 1cp2_A CP2, nitrogenase iron p 95.2 0.012 3.9E-07 47.6 3.3 25 174-198 2-26 (269)
325 2b6h_A ADP-ribosylation factor 95.2 0.011 3.9E-07 45.1 3.1 30 167-196 23-52 (192)
326 1upt_A ARL1, ADP-ribosylation 95.2 0.013 4.3E-07 43.4 3.3 25 173-197 7-31 (171)
327 2www_A Methylmalonic aciduria 95.2 0.014 4.9E-07 49.4 3.9 26 171-196 72-97 (349)
328 4edh_A DTMP kinase, thymidylat 95.2 0.052 1.8E-06 42.5 6.9 52 173-226 6-57 (213)
329 2hxs_A RAB-26, RAS-related pro 95.2 0.01 3.5E-07 44.3 2.7 24 173-196 6-29 (178)
330 2qnr_A Septin-2, protein NEDD5 95.2 0.01 3.4E-07 49.2 2.8 21 175-195 20-40 (301)
331 3kkq_A RAS-related protein M-R 95.1 0.013 4.5E-07 44.0 3.3 26 172-197 17-42 (183)
332 2bme_A RAB4A, RAS-related prot 95.1 0.013 4.5E-07 44.1 3.2 25 173-197 10-34 (186)
333 4dsu_A GTPase KRAS, isoform 2B 95.1 0.013 4.5E-07 44.1 3.2 24 174-197 5-28 (189)
334 2oil_A CATX-8, RAS-related pro 95.1 0.013 4.5E-07 44.5 3.2 25 173-197 25-49 (193)
335 2yyz_A Sugar ABC transporter, 95.1 0.012 4.2E-07 50.0 3.3 26 172-197 28-53 (359)
336 3t5g_A GTP-binding protein RHE 95.1 0.013 4.5E-07 43.9 3.2 25 173-197 6-30 (181)
337 2it1_A 362AA long hypothetical 95.1 0.013 4.3E-07 50.0 3.3 26 172-197 28-53 (362)
338 3bc1_A RAS-related protein RAB 95.1 0.014 4.7E-07 44.1 3.3 25 173-197 11-35 (195)
339 3rlf_A Maltose/maltodextrin im 95.1 0.013 4.3E-07 50.3 3.3 26 172-197 28-53 (381)
340 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.014 4.7E-07 43.8 3.3 24 174-197 6-29 (186)
341 3pqc_A Probable GTP-binding pr 95.1 0.014 4.7E-07 44.2 3.3 26 172-197 22-47 (195)
342 3nh6_A ATP-binding cassette SU 95.1 0.0079 2.7E-07 50.0 2.0 27 171-197 78-104 (306)
343 2a9k_A RAS-related protein RAL 95.1 0.014 4.8E-07 43.8 3.3 25 173-197 18-42 (187)
344 2qm8_A GTPase/ATPase; G protei 95.1 0.017 5.7E-07 48.7 4.0 27 170-196 52-78 (337)
345 3bwd_D RAC-like GTP-binding pr 95.1 0.014 4.9E-07 43.7 3.3 25 173-197 8-32 (182)
346 1g29_1 MALK, maltose transport 95.1 0.013 4.4E-07 50.1 3.3 26 172-197 28-53 (372)
347 1ksh_A ARF-like protein 2; sma 95.1 0.016 5.4E-07 43.7 3.5 33 165-197 9-42 (186)
348 2y8e_A RAB-protein 6, GH09086P 95.1 0.014 4.9E-07 43.4 3.2 24 174-197 15-38 (179)
349 2atv_A RERG, RAS-like estrogen 95.1 0.014 4.9E-07 44.5 3.2 27 171-197 26-52 (196)
350 3pxi_A Negative regulator of g 95.1 0.031 1E-06 52.3 6.1 46 152-197 491-545 (758)
351 2efe_B Small GTP-binding prote 95.1 0.014 4.9E-07 43.6 3.2 24 174-197 13-36 (181)
352 3a8t_A Adenylate isopentenyltr 95.0 0.016 5.4E-07 48.8 3.7 26 172-197 39-64 (339)
353 2v3c_C SRP54, signal recogniti 95.0 0.0099 3.4E-07 51.9 2.5 27 172-198 98-124 (432)
354 1lw7_A Transcriptional regulat 95.0 0.013 4.3E-07 49.9 3.1 26 173-198 170-195 (365)
355 1g8f_A Sulfate adenylyltransfe 95.0 0.031 1.1E-06 49.7 5.7 45 155-199 375-421 (511)
356 1v43_A Sugar-binding transport 95.0 0.014 4.7E-07 49.9 3.3 26 172-197 36-61 (372)
357 2cxx_A Probable GTP-binding pr 95.0 0.014 4.7E-07 44.1 3.0 23 175-197 3-25 (190)
358 2iwr_A Centaurin gamma 1; ANK 95.0 0.01 3.5E-07 44.4 2.3 24 174-197 8-31 (178)
359 2cjw_A GTP-binding protein GEM 95.0 0.016 5.5E-07 44.3 3.4 24 173-196 6-29 (192)
360 2g6b_A RAS-related protein RAB 95.0 0.015 5.3E-07 43.4 3.3 26 173-198 10-35 (180)
361 2bov_A RAla, RAS-related prote 95.0 0.015 5.2E-07 44.5 3.3 26 172-197 13-38 (206)
362 3clv_A RAB5 protein, putative; 95.0 0.015 5.2E-07 44.2 3.2 25 173-197 7-31 (208)
363 2fg5_A RAB-22B, RAS-related pr 95.0 0.015 5.2E-07 44.2 3.2 25 173-197 23-47 (192)
364 2ewv_A Twitching motility prot 95.0 0.023 7.8E-07 48.6 4.6 28 170-197 133-160 (372)
365 1vg8_A RAS-related protein RAB 95.0 0.015 5.2E-07 44.6 3.2 26 172-197 7-32 (207)
366 3tw8_B RAS-related protein RAB 95.0 0.014 4.7E-07 43.6 2.9 25 172-196 8-32 (181)
367 2h92_A Cytidylate kinase; ross 95.0 0.014 4.8E-07 45.5 3.0 24 174-197 4-27 (219)
368 3cbq_A GTP-binding protein REM 95.0 0.011 3.8E-07 45.3 2.4 23 172-194 22-44 (195)
369 2yv5_A YJEQ protein; hydrolase 95.0 0.027 9.4E-07 46.6 4.9 33 161-197 156-188 (302)
370 3oes_A GTPase rhebl1; small GT 95.0 0.016 5.3E-07 44.5 3.2 26 172-197 23-48 (201)
371 1pui_A ENGB, probable GTP-bind 95.0 0.008 2.7E-07 46.4 1.6 26 170-195 23-48 (210)
372 2p67_A LAO/AO transport system 94.9 0.039 1.3E-06 46.5 5.9 28 170-197 53-80 (341)
373 1zd9_A ADP-ribosylation factor 94.9 0.016 5.5E-07 43.9 3.3 25 173-197 22-46 (188)
374 1gwn_A RHO-related GTP-binding 94.9 0.016 5.4E-07 44.9 3.2 26 172-197 27-52 (205)
375 2fh5_B SR-beta, signal recogni 94.9 0.016 5.5E-07 44.9 3.3 25 173-197 7-31 (214)
376 1tue_A Replication protein E1; 94.9 0.024 8.2E-07 44.3 4.1 38 161-198 45-83 (212)
377 2dr3_A UPF0273 protein PH0284; 94.9 0.018 6.2E-07 45.5 3.6 47 173-223 23-69 (247)
378 3llu_A RAS-related GTP-binding 94.9 0.012 4.2E-07 45.0 2.5 24 173-196 20-43 (196)
379 2ew1_A RAS-related protein RAB 94.9 0.016 5.6E-07 44.7 3.2 25 173-197 26-50 (201)
380 2gno_A DNA polymerase III, gam 94.9 0.069 2.4E-06 44.2 7.2 69 158-228 3-74 (305)
381 3reg_A RHO-like small GTPase; 94.9 0.017 5.8E-07 43.9 3.3 26 172-197 22-47 (194)
382 2gf0_A GTP-binding protein DI- 94.9 0.017 5.8E-07 44.0 3.2 26 172-197 7-32 (199)
383 3tkl_A RAS-related protein RAB 94.9 0.017 6E-07 43.8 3.3 25 173-197 16-40 (196)
384 2obl_A ESCN; ATPase, hydrolase 94.8 0.017 5.9E-07 48.9 3.5 35 164-198 61-96 (347)
385 2a5j_A RAS-related protein RAB 94.8 0.018 6E-07 43.8 3.2 24 174-197 22-45 (191)
386 1ega_A Protein (GTP-binding pr 94.8 0.017 5.9E-07 47.8 3.4 26 172-197 7-32 (301)
387 2gf9_A RAS-related protein RAB 94.8 0.018 6.1E-07 43.6 3.3 25 173-197 22-46 (189)
388 1z06_A RAS-related protein RAB 94.8 0.018 6.2E-07 43.6 3.2 25 173-197 20-44 (189)
389 2q3h_A RAS homolog gene family 94.8 0.013 4.6E-07 44.8 2.5 25 173-197 20-44 (201)
390 3d31_A Sulfate/molybdate ABC t 94.8 0.011 3.9E-07 50.0 2.2 26 172-197 25-50 (348)
391 2axn_A 6-phosphofructo-2-kinas 94.8 0.022 7.6E-07 50.9 4.2 27 171-197 33-59 (520)
392 1x3s_A RAS-related protein RAB 94.8 0.019 6.6E-07 43.4 3.3 24 174-197 16-39 (195)
393 2p5s_A RAS and EF-hand domain 94.8 0.019 6.5E-07 44.0 3.2 27 171-197 26-52 (199)
394 1zbd_A Rabphilin-3A; G protein 94.7 0.016 5.4E-07 44.4 2.7 25 173-197 8-32 (203)
395 2o52_A RAS-related protein RAB 94.7 0.014 4.9E-07 44.8 2.5 26 172-197 24-49 (200)
396 3gd7_A Fusion complex of cysti 94.7 0.018 6.2E-07 49.5 3.3 26 171-196 45-70 (390)
397 2bcg_Y Protein YP2, GTP-bindin 94.7 0.02 6.8E-07 44.0 3.2 25 173-197 8-32 (206)
398 2fv8_A H6, RHO-related GTP-bin 94.7 0.02 6.8E-07 44.2 3.2 25 173-197 25-49 (207)
399 3cr8_A Sulfate adenylyltranfer 94.7 0.03 1E-06 50.4 4.8 27 172-198 368-394 (552)
400 3cf2_A TER ATPase, transitiona 94.7 0.022 7.6E-07 53.4 4.0 72 152-228 204-293 (806)
401 2qu8_A Putative nucleolar GTP- 94.6 0.019 6.5E-07 45.1 3.1 27 171-197 27-53 (228)
402 3ch4_B Pmkase, phosphomevalona 94.6 0.031 1.1E-06 43.4 4.1 52 171-233 9-62 (202)
403 1bif_A 6-phosphofructo-2-kinas 94.6 0.024 8.3E-07 49.9 4.0 28 171-198 37-64 (469)
404 2atx_A Small GTP binding prote 94.6 0.021 7.3E-07 43.4 3.2 24 174-197 19-42 (194)
405 1oxx_K GLCV, glucose, ABC tran 94.6 0.01 3.5E-07 50.4 1.5 26 172-197 30-55 (353)
406 2j1l_A RHO-related GTP-binding 94.6 0.016 5.4E-07 45.1 2.5 26 172-197 33-58 (214)
407 2fu5_C RAS-related protein RAB 94.6 0.011 3.8E-07 44.4 1.5 25 173-197 8-32 (183)
408 3eph_A TRNA isopentenyltransfe 94.6 0.025 8.6E-07 48.7 3.8 24 174-197 3-26 (409)
409 1r6b_X CLPA protein; AAA+, N-t 94.6 0.049 1.7E-06 50.9 6.1 46 152-197 458-512 (758)
410 3k53_A Ferrous iron transport 94.6 0.025 8.4E-07 45.9 3.6 25 173-197 3-27 (271)
411 1u0l_A Probable GTPase ENGC; p 94.6 0.036 1.2E-06 45.8 4.7 34 161-197 160-193 (301)
412 3lxx_A GTPase IMAP family memb 94.6 0.021 7E-07 45.3 3.1 28 171-198 27-54 (239)
413 2gco_A H9, RHO-related GTP-bin 94.5 0.023 7.7E-07 43.6 3.2 25 173-197 25-49 (201)
414 2gza_A Type IV secretion syste 94.5 0.018 6E-07 49.0 2.8 26 172-197 174-199 (361)
415 3cph_A RAS-related protein SEC 94.5 0.023 7.8E-07 43.8 3.3 25 173-197 20-44 (213)
416 2hup_A RAS-related protein RAB 94.5 0.023 7.9E-07 43.7 3.2 26 172-197 28-53 (201)
417 2j0v_A RAC-like GTP-binding pr 94.5 0.023 7.9E-07 43.9 3.2 25 173-197 9-33 (212)
418 2orw_A Thymidine kinase; TMTK, 94.5 0.028 9.6E-07 43.0 3.6 24 174-197 4-27 (184)
419 3iev_A GTP-binding protein ERA 94.5 0.023 7.9E-07 47.1 3.4 27 171-197 8-34 (308)
420 2h17_A ADP-ribosylation factor 94.5 0.018 6.1E-07 43.3 2.5 24 174-197 22-45 (181)
421 4bas_A ADP-ribosylation factor 94.5 0.026 8.8E-07 42.9 3.4 26 172-197 16-41 (199)
422 2npi_A Protein CLP1; CLP1-PCF1 94.5 0.02 6.8E-07 50.4 3.0 27 171-197 136-162 (460)
423 3q3j_B RHO-related GTP-binding 94.5 0.024 8.3E-07 44.1 3.3 25 173-197 27-51 (214)
424 3fdi_A Uncharacterized protein 94.5 0.029 9.8E-07 43.5 3.6 26 174-199 7-32 (201)
425 1p5z_B DCK, deoxycytidine kina 94.4 0.014 4.9E-07 47.1 2.0 27 171-197 22-48 (263)
426 2qag_B Septin-6, protein NEDD5 94.4 0.02 6.8E-07 49.8 2.9 21 176-196 45-65 (427)
427 2rcn_A Probable GTPase ENGC; Y 94.4 0.025 8.5E-07 48.1 3.3 25 174-198 216-240 (358)
428 2g3y_A GTP-binding protein GEM 94.3 0.025 8.6E-07 44.2 3.1 24 172-195 36-59 (211)
429 2x77_A ADP-ribosylation factor 94.3 0.034 1.2E-06 42.0 3.8 25 171-195 20-44 (189)
430 2il1_A RAB12; G-protein, GDP, 94.3 0.025 8.5E-07 43.1 2.9 24 174-197 27-50 (192)
431 3tmk_A Thymidylate kinase; pho 94.3 0.099 3.4E-06 41.0 6.4 27 173-199 5-31 (216)
432 3kjh_A CO dehydrogenase/acetyl 94.3 0.059 2E-06 42.6 5.2 43 175-219 2-44 (254)
433 2dpy_A FLII, flagellum-specifi 94.2 0.028 9.6E-07 49.1 3.5 28 171-198 155-182 (438)
434 3hjn_A DTMP kinase, thymidylat 94.2 0.091 3.1E-06 40.5 6.0 50 176-227 3-52 (197)
435 1m8p_A Sulfate adenylyltransfe 94.2 0.067 2.3E-06 48.4 6.0 29 170-198 393-421 (573)
436 3io3_A DEHA2D07832P; chaperone 94.2 0.032 1.1E-06 47.2 3.7 29 170-198 15-43 (348)
437 4dkx_A RAS-related protein RAB 94.2 0.024 8.2E-07 44.5 2.7 23 175-197 15-37 (216)
438 2xtp_A GTPase IMAP family memb 94.2 0.034 1.2E-06 44.6 3.6 26 172-197 21-46 (260)
439 2r8r_A Sensor protein; KDPD, P 94.2 0.031 1.1E-06 44.2 3.2 31 174-205 7-37 (228)
440 4dzz_A Plasmid partitioning pr 94.1 0.028 9.5E-07 43.2 2.9 25 174-198 2-27 (206)
441 3ea0_A ATPase, para family; al 94.1 0.034 1.2E-06 44.0 3.5 28 172-199 3-31 (245)
442 3th5_A RAS-related C3 botulinu 93.2 0.0089 3.1E-07 46.0 0.0 30 168-197 25-54 (204)
443 1h65_A Chloroplast outer envel 94.1 0.06 2.1E-06 43.5 5.0 37 161-197 25-63 (270)
444 3def_A T7I23.11 protein; chlor 94.1 0.07 2.4E-06 43.0 5.3 37 161-197 22-60 (262)
445 1qvr_A CLPB protein; coiled co 94.1 0.06 2E-06 51.1 5.6 45 153-197 559-612 (854)
446 1yqt_A RNAse L inhibitor; ATP- 94.1 0.03 1E-06 50.3 3.3 27 172-198 311-337 (538)
447 2aka_B Dynamin-1; fusion prote 94.0 0.061 2.1E-06 43.9 5.0 37 161-197 8-50 (299)
448 2h57_A ADP-ribosylation factor 94.0 0.024 8.2E-07 42.9 2.4 24 174-197 22-45 (190)
449 2f7s_A C25KG, RAS-related prot 94.0 0.031 1.1E-06 43.3 3.1 25 173-197 25-49 (217)
450 3euj_A Chromosome partition pr 94.0 0.031 1.1E-06 49.4 3.3 25 174-198 30-54 (483)
451 1wf3_A GTP-binding protein; GT 94.0 0.035 1.2E-06 46.0 3.5 25 173-197 7-31 (301)
452 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.022 7.5E-07 47.9 2.3 25 173-197 171-195 (330)
453 1mky_A Probable GTP-binding pr 94.0 0.071 2.4E-06 46.5 5.6 42 156-197 152-204 (439)
454 3f9v_A Minichromosome maintena 94.0 0.027 9.2E-07 51.2 2.9 45 153-197 296-351 (595)
455 1f2t_A RAD50 ABC-ATPase; DNA d 94.0 0.045 1.5E-06 40.2 3.7 23 173-195 23-45 (149)
456 3cpj_B GTP-binding protein YPT 94.0 0.035 1.2E-06 43.3 3.2 25 173-197 13-37 (223)
457 2qag_C Septin-7; cell cycle, c 93.9 0.025 8.7E-07 49.1 2.6 22 176-197 34-55 (418)
458 1yqt_A RNAse L inhibitor; ATP- 93.9 0.033 1.1E-06 50.0 3.3 25 172-196 46-70 (538)
459 3ice_A Transcription terminati 93.9 0.099 3.4E-06 44.9 6.0 53 162-215 162-216 (422)
460 3v9p_A DTMP kinase, thymidylat 93.9 0.031 1.1E-06 44.3 2.8 27 173-199 25-51 (227)
461 4hlc_A DTMP kinase, thymidylat 93.9 0.15 5.3E-06 39.5 6.8 50 174-226 3-52 (205)
462 2gks_A Bifunctional SAT/APS ki 93.9 0.088 3E-06 47.3 6.1 42 157-198 354-397 (546)
463 3ozx_A RNAse L inhibitor; ATP 93.9 0.028 9.6E-07 50.4 2.8 25 173-197 294-318 (538)
464 3b1v_A Ferrous iron uptake tra 93.9 0.041 1.4E-06 44.9 3.5 24 173-196 3-26 (272)
465 2qtf_A Protein HFLX, GTP-bindi 93.9 0.037 1.2E-06 47.2 3.4 27 171-197 177-203 (364)
466 2qmh_A HPR kinase/phosphorylas 93.8 0.037 1.3E-06 43.0 3.0 26 172-197 33-58 (205)
467 3iqw_A Tail-anchored protein t 93.8 0.13 4.4E-06 43.2 6.6 50 170-221 13-62 (334)
468 3gj0_A GTP-binding nuclear pro 93.8 0.022 7.4E-07 44.4 1.6 24 173-196 15-39 (221)
469 1x6v_B Bifunctional 3'-phospho 93.7 0.047 1.6E-06 49.8 4.0 26 172-197 51-76 (630)
470 3cwq_A Para family chromosome 93.7 0.12 4.2E-06 40.0 6.0 43 175-220 2-45 (209)
471 1a5t_A Delta prime, HOLB; zinc 93.7 0.098 3.3E-06 43.8 5.7 42 157-198 7-49 (334)
472 2q6t_A DNAB replication FORK h 93.7 0.15 5.2E-06 44.5 7.1 52 172-226 199-250 (444)
473 3iby_A Ferrous iron transport 93.7 0.039 1.3E-06 44.5 3.1 24 174-197 2-25 (256)
474 2yc2_C IFT27, small RAB-relate 93.7 0.015 5.1E-07 44.6 0.6 23 174-196 21-43 (208)
475 3t5d_A Septin-7; GTP-binding p 93.7 0.029 1E-06 45.6 2.4 22 174-195 9-30 (274)
476 3ozx_A RNAse L inhibitor; ATP 93.7 0.034 1.2E-06 49.9 2.9 25 172-196 24-48 (538)
477 3bk7_A ABC transporter ATP-bin 93.6 0.039 1.3E-06 50.3 3.3 26 172-197 381-406 (607)
478 2e87_A Hypothetical protein PH 93.6 0.047 1.6E-06 46.2 3.6 27 171-197 165-191 (357)
479 1fx0_B ATP synthase beta chain 93.6 0.15 5.3E-06 44.9 6.9 64 163-227 154-219 (498)
480 3lxw_A GTPase IMAP family memb 93.6 0.041 1.4E-06 44.0 3.1 25 173-197 21-45 (247)
481 3j16_B RLI1P; ribosome recycli 93.6 0.041 1.4E-06 50.1 3.3 24 174-197 379-402 (608)
482 2ck3_D ATP synthase subunit be 93.6 0.14 4.9E-06 44.9 6.6 64 163-227 142-207 (482)
483 3fkq_A NTRC-like two-domain pr 93.6 0.05 1.7E-06 46.4 3.7 28 171-198 141-169 (373)
484 3j16_B RLI1P; ribosome recycli 93.5 0.043 1.5E-06 50.0 3.3 26 172-197 102-127 (608)
485 4dhe_A Probable GTP-binding pr 93.5 0.028 9.5E-07 43.7 1.8 27 171-197 27-53 (223)
486 3hdt_A Putative kinase; struct 93.4 0.057 2E-06 42.6 3.6 28 171-198 12-39 (223)
487 2qag_A Septin-2, protein NEDD5 93.4 0.031 1.1E-06 47.5 2.2 22 174-195 38-59 (361)
488 4a1f_A DNAB helicase, replicat 93.4 0.19 6.5E-06 42.2 7.0 52 172-227 45-96 (338)
489 4i1u_A Dephospho-COA kinase; s 93.4 0.069 2.4E-06 41.8 3.9 25 171-195 7-31 (210)
490 1t9h_A YLOQ, probable GTPase E 93.4 0.017 6E-07 47.9 0.5 23 174-196 174-196 (307)
491 1ypw_A Transitional endoplasmi 93.3 0.032 1.1E-06 52.6 2.3 48 151-198 476-536 (806)
492 2dby_A GTP-binding protein; GD 93.3 0.051 1.8E-06 46.3 3.4 23 175-197 3-25 (368)
493 1u0j_A DNA replication protein 93.3 0.12 4E-06 42.0 5.3 36 161-196 90-127 (267)
494 3a1s_A Iron(II) transport prot 93.3 0.046 1.6E-06 44.1 3.0 24 174-197 6-29 (258)
495 3cmu_A Protein RECA, recombina 93.3 0.29 1E-05 50.3 9.1 69 174-249 1428-1502(2050)
496 3cnl_A YLQF, putative uncharac 93.3 0.1 3.4E-06 42.2 4.9 36 161-197 88-123 (262)
497 1ni3_A YCHF GTPase, YCHF GTP-b 93.3 0.053 1.8E-06 46.6 3.4 24 173-196 20-43 (392)
498 3b5x_A Lipid A export ATP-bind 93.3 0.051 1.7E-06 49.2 3.4 27 171-197 367-393 (582)
499 1dek_A Deoxynucleoside monopho 93.2 0.064 2.2E-06 42.9 3.6 23 174-196 2-24 (241)
500 3b60_A Lipid A export ATP-bind 93.2 0.054 1.8E-06 49.1 3.5 26 172-197 368-393 (582)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.72 E-value=2.2e-17 Score=149.69 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=82.6
Q ss_pred cChHHHHHHHHHHhcCC---CceEEEEEccCCCCHHHHHHHHHH--HhcCCCCCCeEEEEEcCCCC--CHHHHHHHHHHH
Q 036637 155 ESRSSTLNNVLRALQDP---DVNMVGIYGMGGIGKTTLAKEVAI--QFGRDQFFDQVIFVEVPHIP--DIRKIQGEIADK 227 (250)
Q Consensus 155 ~gr~~~~~~l~~~L~~~---~~~vi~I~G~gGvGKTtLa~~v~~--~~~v~~~Fd~~~wv~vs~~~--~~~~l~~~i~~~ 227 (250)
+||+.++++|.++|.+. +.++|+||||||+||||||+.+|+ +.+++.+|++++||+|++.+ ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999743 689999999999999999999999 68888999999999999986 899999999999
Q ss_pred hCCCCC--------CCCHHHHHHHHHHHhcC
Q 036637 228 LGLIFF--------EETESGRARSLYNRLKG 250 (250)
Q Consensus 228 l~~~~~--------~~~~~~~~~~l~~~L~~ 250 (250)
++.+.. ..+..++...|+++|++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~ 241 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALID 241 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcC
Confidence 986522 12345667888888864
No 2
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.43 E-value=9.8e-13 Score=94.41 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=57.3
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036637 29 NYRSNFENLKTELEKLKDDGASMQHGVDEGRRKG-EEIEKNVEKWLASVNNIITEAEKFTGDADKA 93 (250)
Q Consensus 29 ~~~~~~~~l~~~l~~L~~~l~~~~~~l~~a~~~~-~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~ 93 (250)
+....+.+++.++++|+++|..|+++|.+++... ..+++.++.|+.+||+++||+||++|+|.+.
T Consensus 16 ~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 16 EEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999998863 3468999999999999999999999999754
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.42 E-value=2.6e-13 Score=133.04 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=80.0
Q ss_pred CCCCcCCCcChHHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhcC-CCCC-CeEEEEEcCCCCC--HHHH
Q 036637 147 SNKDYEAFESRSSTLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFGR-DQFF-DQVIFVEVPHIPD--IRKI 220 (250)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v-~~~F-d~~~wv~vs~~~~--~~~l 220 (250)
.|.+...|+||+.++++|.++|. +++.++|+|+||||+||||||+++|++.++ ..+| +.++||++++.++ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 34456679999999999999996 567899999999999999999999988643 3445 6888999998654 4445
Q ss_pred HHHHHHHhCCCCC-----CCCHHHHHHHHHHHhc
Q 036637 221 QGEIADKLGLIFF-----EETESGRARSLYNRLK 249 (250)
Q Consensus 221 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~L~ 249 (250)
+..++.+++.... ..+..+..+.|+.+|.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 232 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML 232 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHh
Confidence 7778888865432 3456777788887775
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.41 E-value=1.2e-13 Score=130.77 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=68.3
Q ss_pred CcChHHHHHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCe-EEEEEcCCCCCHHHHHHHHHHHh
Q 036637 154 FESRSSTLNNVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQ-VIFVEVPHIPDIRKIQGEIADKL 228 (250)
Q Consensus 154 ~~gr~~~~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~-~~wv~vs~~~~~~~l~~~i~~~l 228 (250)
.+||+.++++|.++|.. ++.++|+|+||||+||||||+.+|++.+++.+|++ ++|+++++.++...++..|+..+
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999999984 56899999999999999999999999888889986 99999999999999988887754
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.31 E-value=3.2e-12 Score=116.67 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=74.9
Q ss_pred CCCcCCCcChHHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhcC-CCCC-CeEEEEEcCCCCCHHHHHHH
Q 036637 148 NKDYEAFESRSSTLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFGR-DQFF-DQVIFVEVPHIPDIRKIQGE 223 (250)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v-~~~F-d~~~wv~vs~~~~~~~l~~~ 223 (250)
|.....++||+.+++.|.++|. +++.++++|+||||+||||||..+|++..+ ..+| +.++|+++++. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3355679999999999999988 457899999999999999999999988755 5789 58999999876 33444443
Q ss_pred ---HHHHhCCC-----CCCCCHHHHHHHHHHHhc
Q 036637 224 ---IADKLGLI-----FFEETESGRARSLYNRLK 249 (250)
Q Consensus 224 ---i~~~l~~~-----~~~~~~~~~~~~l~~~L~ 249 (250)
++..++.. ....+.......|+..|.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 232 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML 232 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHc
Confidence 44566531 122345566667776653
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.78 E-value=3.3e-08 Score=85.76 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=72.6
Q ss_pred cCCCcChHHHHHHHHHHh-c----C--CCceEEEE--EccCCCCHHHHHHHHHHHhcCC---CCCC-eEEEEEcCCCCCH
Q 036637 151 YEAFESRSSTLNNVLRAL-Q----D--PDVNMVGI--YGMGGIGKTTLAKEVAIQFGRD---QFFD-QVIFVEVPHIPDI 217 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGvGKTtLa~~v~~~~~v~---~~Fd-~~~wv~vs~~~~~ 217 (250)
+..++||+.+++.|.++| . . .....+.| +|++|+|||||++.+++..... ..|+ ..+|+...+..+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 357899999999999888 3 2 34556666 9999999999999999876431 1234 4678887778899
Q ss_pred HHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHh
Q 036637 218 RKIQGEIADKLGLIFF--EETESGRARSLYNRL 248 (250)
Q Consensus 218 ~~l~~~i~~~l~~~~~--~~~~~~~~~~l~~~L 248 (250)
..++..|+.+++.+.. ..+.......|.+.|
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 133 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNL 133 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999987643 234455566666655
No 7
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.59 E-value=1.7e-07 Score=80.31 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=72.2
Q ss_pred cCCCcChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCC-CCeEEEEEcCCCCCHHHHHHHHH
Q 036637 151 YEAFESRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQF-FDQVIFVEVPHIPDIRKIQGEIA 225 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~-Fd~~~wv~vs~~~~~~~l~~~i~ 225 (250)
+..++||+.+++.+.+++. ......+.|+|++|+|||||++.+++...-... --..+|+..+...+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999887 455778999999999999999999987642110 12567888777778888889998
Q ss_pred HHhCCCCC--CCCHHHHHHHHHHHh
Q 036637 226 DKLGLIFF--EETESGRARSLYNRL 248 (250)
Q Consensus 226 ~~l~~~~~--~~~~~~~~~~l~~~L 248 (250)
.+++.+.. ..+..+....+.+.|
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 88876543 223444455555544
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.55 E-value=7.9e-07 Score=76.15 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=73.7
Q ss_pred cCCCcChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHhcCCC---CCC-eEEEEEcCCCCCHHHHHH
Q 036637 151 YEAFESRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ---FFD-QVIFVEVPHIPDIRKIQG 222 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~---~Fd-~~~wv~vs~~~~~~~l~~ 222 (250)
+..++||+.+++.+.+++. ......+.|+|++|+||||||+.+++...-.. ..+ ..+|+......+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3678999999999999884 34567889999999999999999998763210 112 467888888889999999
Q ss_pred HHHHHhCCCCC--CCCHHHHHHHHHHHh
Q 036637 223 EIADKLGLIFF--EETESGRARSLYNRL 248 (250)
Q Consensus 223 ~i~~~l~~~~~--~~~~~~~~~~l~~~L 248 (250)
.|+.+++.+.. ..+..+....+.+.+
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999977543 233455556666555
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.50 E-value=3.8e-07 Score=78.33 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=70.9
Q ss_pred CCCcChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHhcCC----CCC--CeEEEEEcCCCC-CHHHH
Q 036637 152 EAFESRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRD----QFF--DQVIFVEVPHIP-DIRKI 220 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~----~~F--d~~~wv~vs~~~-~~~~l 220 (250)
..++||+.+++.+.+++. ....+.+.|+|++|+||||||+.+++...-. ..+ -..+|+..+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 578999999998887665 4456789999999999999999999875321 112 356788877777 88999
Q ss_pred HHHHHHHh-CCCCC--CCCHHHHHHHHHHHhc
Q 036637 221 QGEIADKL-GLIFF--EETESGRARSLYNRLK 249 (250)
Q Consensus 221 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~L~ 249 (250)
+..++.++ +.+.. ..+.......+.+.++
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 131 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR 131 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99998888 44322 2334455556665553
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.49 E-value=1.8e-07 Score=79.16 Aligned_cols=72 Identities=13% Similarity=0.222 Sum_probs=56.6
Q ss_pred CCcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC------CHHHHHH
Q 036637 149 KDYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP------DIRKIQG 222 (250)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~------~~~~l~~ 222 (250)
..+..++||+.+++.|.+++.+. +++.|+|++|+|||||++.+++.. + .+|+.+.... +...++.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 34567999999999999987653 789999999999999999999874 1 6778775432 6677777
Q ss_pred HHHHHhC
Q 036637 223 EIADKLG 229 (250)
Q Consensus 223 ~i~~~l~ 229 (250)
.+...++
T Consensus 80 ~l~~~l~ 86 (350)
T 2qen_A 80 ELQSTIS 86 (350)
T ss_dssp HHHHHSC
T ss_pred HHHHHHH
Confidence 7766654
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.48 E-value=2.1e-06 Score=73.65 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=72.2
Q ss_pred CCCcChHHHHHHHHHHhcC----CCce--EEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 036637 152 EAFESRSSTLNNVLRALQD----PDVN--MVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIA 225 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~----~~~~--vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~ 225 (250)
..++||+.+++.+.+++.. .... .+.|+|.+|+|||||++.+++...-... -..+|+..+...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 5789999999999888873 3334 8999999999999999999988753211 2567788788888999999999
Q ss_pred HHhCCCCC--CCCHHHHHHHHHHHh
Q 036637 226 DKLGLIFF--EETESGRARSLYNRL 248 (250)
Q Consensus 226 ~~l~~~~~--~~~~~~~~~~l~~~L 248 (250)
..++.... ..+.......+.+.|
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l 120 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHL 120 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHH
Confidence 99976543 234445555555544
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.43 E-value=9.5e-07 Score=74.75 Aligned_cols=70 Identities=13% Similarity=0.271 Sum_probs=53.8
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCC-----CCHHHHHHHH
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHI-----PDIRKIQGEI 224 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~-----~~~~~l~~~i 224 (250)
.+..++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+..... .+...++..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 45678999999999999 655 69999999999999999999988642 2588887642 3556666555
Q ss_pred HHHh
Q 036637 225 ADKL 228 (250)
Q Consensus 225 ~~~l 228 (250)
...+
T Consensus 82 ~~~l 85 (357)
T 2fna_A 82 QKEI 85 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.16 E-value=7.9e-06 Score=64.00 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=53.4
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCC-eEEEEEcCCCCCHHHHHHHH
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFD-QVIFVEVPHIPDIRKIQGEI 224 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd-~~~wv~vs~~~~~~~l~~~i 224 (250)
....++|++..++.+.+++.......+.|+|.+|+|||||++.+++..... .+. ..+.+..+...+...+...+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHHHHHH
Confidence 445688999999999999887666568999999999999999999875322 222 34455555555555554443
No 14
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.15 E-value=4.1e-06 Score=64.12 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=42.2
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|++..++.+.+++.......+.|+|.+|+||||||+.+.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999987767778899999999999999998875
No 15
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.05 E-value=5.8e-06 Score=63.11 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=42.2
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|++..++.+++.+.......+-|+|.+|+||||||+.+.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999987767777899999999999999999876
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.98 E-value=3.1e-05 Score=64.98 Aligned_cols=78 Identities=9% Similarity=0.106 Sum_probs=59.0
Q ss_pred CCcChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCC---C-C-eEEEEEcCCCCCHHHHHHH
Q 036637 153 AFESRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQF---F-D-QVIFVEVPHIPDIRKIQGE 223 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~---F-d-~~~wv~vs~~~~~~~l~~~ 223 (250)
.+.||+.+.+.|..+|. +.....+-|+|++|+|||++++.|.+....... . + ..+.+....-.+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 37789999999887776 567788899999999999999999998853211 1 1 3455665566788899999
Q ss_pred HHHHhCC
Q 036637 224 IADKLGL 230 (250)
Q Consensus 224 i~~~l~~ 230 (250)
|++++..
T Consensus 101 I~~~L~g 107 (318)
T 3te6_A 101 IWFAISK 107 (318)
T ss_dssp HHHHHSC
T ss_pred HHHHhcC
Confidence 9999954
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.93 E-value=1.5e-05 Score=63.09 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=41.4
Q ss_pred CcCCCcChHHHHHHHHHHhcCC-CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDP-DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|++..++.+..++... ..+.+.|+|.+|+|||||++.+++...
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456899999999999988744 346889999999999999999998764
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=3.3e-05 Score=64.40 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=50.4
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCC-eEEEEEcCCCCCHHHH
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFD-QVIFVEVPHIPDIRKI 220 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd-~~~wv~vs~~~~~~~l 220 (250)
....++|++..++.+.+++.......+.++|++|+||||+|+.+++...-. .+. ..+++..+...+...+
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~i 89 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR-SYADGVLELNASDDRGIDVV 89 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GHHHHEEEECTTSCCSHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCCEEEecCccccChHHH
Confidence 445688999999999999887655458999999999999999999875321 122 3455555554454443
No 19
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=8.5e-05 Score=61.96 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=41.1
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|++..++.+..++.......+-++|++|+||||+|+.+++..
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 445689999999999998886655558999999999999999999875
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.53 E-value=0.00011 Score=60.24 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=40.2
Q ss_pred CcCCCcChHHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQD-------------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+++.. ....-+-|+|.+|+||||||+.+.+...
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 456789999999888887642 3456789999999999999999998764
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.46 E-value=0.00038 Score=58.05 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=49.1
Q ss_pred CcCCCcChHHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 036637 150 DYEAFESRSSTLNNVLRALQ-----DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEI 224 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i 224 (250)
....++|++..+..+..++. ......+-|+|.+|+||||||+.+++.... ..+++..+......++...+
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~~l 84 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAAIL 84 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHHHH
Confidence 44578999988888877765 234567889999999999999999987642 23455555444555554433
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.45 E-value=0.00033 Score=55.48 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=40.9
Q ss_pred cCCCcCh---HHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 151 YEAFESR---SSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 151 ~~~~~gr---~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
...++|. ...++.+..++.......+.|+|.+|+||||||+.+.+..... .....|++.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~ 89 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLG 89 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHH
Confidence 3455552 3556666666655567788999999999999999999876532 2244556554
No 23
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.38 E-value=0.00022 Score=63.05 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=40.4
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...++|++.+++.+++.|......-+-++|.+|+|||+||+.+.+..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999876555556799999999999999999875
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=0.00016 Score=61.09 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=40.3
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|++..++.+..++.......+-++|.+|+||||+|+.+.+..
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445688999899999998886654448999999999999999998774
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.35 E-value=0.00032 Score=57.85 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=39.3
Q ss_pred CcCCCcChHHHHHHHHHHhcC------------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQD------------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.+.+++.. ...+.+-++|.+|+||||||+.+.+...
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 445689999988888887631 2356788999999999999999998764
No 26
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.35 E-value=0.00018 Score=53.00 Aligned_cols=45 Identities=29% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCcChHHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 153 AFESRSSTLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++|.+....++.+.+. .....-|-|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46788777777777664 2333446799999999999999998764
No 27
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.34 E-value=0.00026 Score=58.73 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=40.7
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|++..++.+.+++.......+-++|.+|+||||+|+.+.+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 345688999999999998886655558999999999999999998875
No 28
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.30 E-value=0.00039 Score=59.10 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=40.8
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|++..++.+.+++.... .+.+-|+|..|+||||+|+.+.+...
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34568999999999999887443 46788999999999999999988764
No 29
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.30 E-value=0.00039 Score=57.62 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=35.6
Q ss_pred CCcChHHHHHHHHHHhc---------------CCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 153 AFESRSSTLNNVLRALQ---------------DPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.++|.+..++.+.+++. ......+-++|.+|+|||+||+.+.+....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47888877777765543 234557899999999999999988776643
No 30
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.29 E-value=0.00057 Score=60.06 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=41.1
Q ss_pred CcCCCcChHHHH---HHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTL---NNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..+ ..|...+.......+-++|.+|+||||||+.+.+...
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 456788988877 6777777777778889999999999999999998764
No 31
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=0.00037 Score=62.43 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=41.0
Q ss_pred CcCCCcChHHHHHHHHHHhcC-----------------CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQD-----------------PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|++..++.+.+++.. ...+.+-++|++|+||||+|+.+.+..
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999874 134688999999999999999999876
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.26 E-value=0.00036 Score=58.69 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=40.0
Q ss_pred CcCCCcChHHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQ-----DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|++..++.+..++. ......+-|+|.+|+|||+||+.+.+...
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45678999998888888776 24456789999999999999999987753
No 33
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.25 E-value=0.00042 Score=53.99 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 157 RSSTLNNVLRALQD---PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 157 r~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
++..++.|.+.+.. ....+|+|+|..|+||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566777777763 356799999999999999999998755
No 34
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.19 E-value=0.00057 Score=53.00 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCC----CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 160 TLNNVLRALQDP----DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 160 ~~~~l~~~L~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
.++.+.+++... ....+.|+|.+|+||||||+.+++..... ....+|++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~ 91 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH
Confidence 445555555432 22678999999999999999999887532 3345666543
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.19 E-value=0.00055 Score=55.19 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=35.6
Q ss_pred cCCCcChHHHHHHHHHHhc---C---------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQ---D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...++|.+..++.+.+++. . ...+-+-++|.+|+|||++|+.+.+...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567888877766655432 2 2345678999999999999999998764
No 36
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.00031 Score=59.39 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=38.4
Q ss_pred CcCCCcChHHHHHHHHHHh-cCCCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 150 DYEAFESRSSTLNNVLRAL-QDPDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L-~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
....++|.+...+.+.+++ .......+.++|..|+||||+++.+.+.
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999888 5444333899999999999999999885
No 37
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.17 E-value=0.00049 Score=57.14 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=37.7
Q ss_pred cCCCcChHHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQD-------------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+.|.+..++.|.+++.. ...+.+.++|.+|+||||||+.+.+...
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 44688888877777766541 3456789999999999999999998764
No 38
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.16 E-value=0.00071 Score=57.62 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=39.1
Q ss_pred CcCCCcChHHHHHHHHHHhc------------CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQ------------DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+.+. ....+-+-++|.+|+|||+||+.+.+...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 34568899988888887763 23456788999999999999999998753
No 39
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.11 E-value=0.00033 Score=53.40 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 157 RSSTLNNVLRALQD---PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 157 r~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++.+.+++.+ .....+.++|..|+|||||++.+++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445555555442 3457889999999999999999998764
No 40
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.11 E-value=0.00067 Score=53.07 Aligned_cols=39 Identities=31% Similarity=0.493 Sum_probs=30.8
Q ss_pred HHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 160 TLNNVLRALQD--PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
-.++|.+.+.. ....+++|+|..|+|||||++.+..-..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45566666653 4667999999999999999999987654
No 41
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.07 E-value=0.00052 Score=65.21 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=41.5
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|++.++..+++.|......-+.++|.+|+||||||+.+.+..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 345689999999999999886655667899999999999999999876
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.07 E-value=0.0011 Score=55.61 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=39.3
Q ss_pred CcCCCcChHHHHHHHHHHhc------------CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQ------------DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+++. ....+-+-++|.+|+|||+||+.+.+...
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 45678999999998888772 12345688999999999999999998764
No 43
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.04 E-value=0.00075 Score=56.92 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=39.0
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..++.|..++....+..+.++|..|+||||+|+.+.+..
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578888888888888776655448999999999999999998774
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.03 E-value=0.00078 Score=63.11 Aligned_cols=48 Identities=27% Similarity=0.389 Sum_probs=41.1
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|++..++.+++.|......-+-++|.+|+||||+|+.+.+..
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999876555557899999999999999999875
No 45
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.03 E-value=0.00034 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+|.|+|++|+||||+++.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 443
No 46
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.02 E-value=0.00098 Score=62.39 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=54.7
Q ss_pred cCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcC---CC-CCCeEEEE-EcC-------CCCCHH
Q 036637 151 YEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGR---DQ-FFDQVIFV-EVP-------HIPDIR 218 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v---~~-~Fd~~~wv-~vs-------~~~~~~ 218 (250)
...++|++.++..+++.|......-+-++|.+|+||||+|+.+.+...- .. .+++.+|. ..+ ..-..+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e 264 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHH
Confidence 4568999999999999998666666789999999999999999876521 11 12444432 111 112456
Q ss_pred HHHHHHHHHhC
Q 036637 219 KIQGEIADKLG 229 (250)
Q Consensus 219 ~l~~~i~~~l~ 229 (250)
+.++.++..+.
T Consensus 265 ~~l~~~~~~~~ 275 (758)
T 1r6b_X 265 KRFKALLKQLE 275 (758)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 66677776664
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.0011 Score=55.52 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=37.6
Q ss_pred CcCCCcChHHHHHHHHHHhc------------CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQ------------DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+.|.+..++.|.+.+. ....+-+-++|++|+|||+||+.+.+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 34568888888888777653 1234678899999999999999999876
No 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.99 E-value=0.00094 Score=56.28 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=36.4
Q ss_pred CcCCCcChHHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQ-----DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.+-..+. ...+..+.++|.+|+|||||++.+.+...
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34457787766666554443 23457789999999999999999998763
No 49
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.95 E-value=0.00099 Score=53.75 Aligned_cols=49 Identities=24% Similarity=0.231 Sum_probs=35.1
Q ss_pred CcCCCcChHHHHHHHHHH---hcC---------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRA---LQD---------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~---L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.+.+. +.. ...+-+.++|.+|+||||||+.+.+...
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 445688887766655443 322 1234578999999999999999998764
No 50
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.95 E-value=0.00077 Score=55.64 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=37.5
Q ss_pred CCCcChHHHHHHHHHHhcC--------------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 152 EAFESRSSTLNNVLRALQD--------------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..++|++..++.+...+.. ....-+-++|.+|+|||++|+.+.+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999888888776643 2345678999999999999999998773
No 51
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.95 E-value=0.00092 Score=52.63 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 161 LNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.+.+.+......+|.|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44444444455688999999999999999999988753
No 52
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.94 E-value=0.00055 Score=51.38 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 53
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.92 E-value=0.00061 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 54
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.92 E-value=0.00062 Score=51.57 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|.|+|++|+||||+++.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999987653
No 55
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.92 E-value=0.00061 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999865
No 56
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.91 E-value=0.0012 Score=55.94 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=37.4
Q ss_pred cCCCcChHHHHHH---HHHHhcCCC--ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNN---VLRALQDPD--VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~---l~~~L~~~~--~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...++|++..++. +.+.+.... .+.+-++|.+|+|||+||+.+.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5578999877655 455554433 35889999999999999999999876
No 57
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.91 E-value=0.0014 Score=54.71 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=40.7
Q ss_pred CcCCCcChHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.+.+++.... .+++-+.|.+|+||||+|+.+.+...
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 45678899999999999888554 46777888899999999999988763
No 58
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.89 E-value=0.0022 Score=50.11 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=38.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGL 230 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~ 230 (250)
.-.++.|+|.+|+|||||+..+.. .. =..++|++....++...+.+ ++..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~ 71 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ-MAETRGL 71 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH-HHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH-HHHhcCC
Confidence 346899999999999999999988 21 24678888877666665543 4444443
No 59
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00064 Score=51.92 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 60
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.87 E-value=0.0019 Score=55.61 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=39.5
Q ss_pred CcCCCcChHHHHHHHHHHhc------------CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQ------------DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+++. ....+-+-++|.+|+|||+||+.+.+...
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 45678999999999888773 12346788999999999999999987753
No 61
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.86 E-value=0.00057 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987653
No 62
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.86 E-value=0.0007 Score=52.51 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+|.|+|+.|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998665
No 63
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.85 E-value=0.0045 Score=49.04 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=41.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC----CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ----FFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~----~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++.|+|.+|+|||||+..+........ .-..++|+.....++...+. .++.+++.+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~ 85 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLS 85 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCC
Confidence 346899999999999999999998643221 12478888887766665543 345556544
No 64
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.83 E-value=0.00084 Score=52.13 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=25.7
Q ss_pred cCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 169 QDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 169 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
......+|.|+|+.|+|||||++.+.....
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999987764
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.81 E-value=0.00094 Score=54.15 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=32.6
Q ss_pred CCCcChHHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 152 EAFESRSSTLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..++|.+.....+++.+. .....-+-|+|..|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 356788777777766554 23335567999999999999999997653
No 66
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.81 E-value=0.0016 Score=53.29 Aligned_cols=47 Identities=28% Similarity=0.313 Sum_probs=33.3
Q ss_pred cCCCcChHHHHHHHHHHhc----C----------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQ----D----------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~----------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+.|.+..++.|.+.+. . -..+ +.++|.+|+|||||++.+.+...
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcC
Confidence 3456777777777766543 1 1233 89999999999999999998764
No 67
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.80 E-value=0.0009 Score=51.94 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456799999999999999999998765
No 68
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.78 E-value=0.00076 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+|.|+|+.|+||||+++.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998775
No 69
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.77 E-value=0.0024 Score=56.03 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=38.7
Q ss_pred CcCCCcChHHHHHHHHHHhc------------CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 150 DYEAFESRSSTLNNVLRALQ------------DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....++|.+..++.|.+.+. ....+-+-++|++|+|||+||+.+.+..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899988888887763 1234678899999999999999999876
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.77 E-value=0.0025 Score=51.20 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHhc
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+.|+|..|+|||||++.+++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 71
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.77 E-value=0.00096 Score=52.05 Aligned_cols=28 Identities=43% Similarity=0.597 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|+|+|..|+|||||++.+..-..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999988643
No 72
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.77 E-value=0.0017 Score=55.22 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=37.8
Q ss_pred CcCCCcChHHHHHHHHHHhc------------CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQ------------DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.|.+.+. ....+-|-++|.+|+|||+||+.+.+...
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34568898888888887763 12234578999999999999999998874
No 73
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.76 E-value=0.00087 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998763
No 74
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.001 Score=50.85 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|.|.|+.|+||||+++.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 75
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.75 E-value=0.0012 Score=51.70 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 158 SSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+.+...+......+|.|+|.+|+|||||+..+....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555554445578899999999999999999988764
No 76
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.74 E-value=0.0012 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987653
No 77
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.74 E-value=0.001 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...|.++|+.|+||||+++.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987653
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.74 E-value=0.00048 Score=50.59 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=30.8
Q ss_pred CCcChHHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 153 AFESRSSTLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++|.+...+++.+.+. .....-|-|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 46777777777766654 1223346799999999999999987643
No 79
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.73 E-value=0.0011 Score=50.09 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 80
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.73 E-value=0.0019 Score=52.52 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=33.2
Q ss_pred CCcChHHHHHHHHH-------Hhc---CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 153 AFESRSSTLNNVLR-------ALQ---DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 153 ~~~gr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.++|.....+.++. .+. .....-+-++|.+|+|||+||+.+.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45666555444444 332 45567888999999999999999998753
No 81
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.70 E-value=0.0023 Score=54.26 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 156 SRSSTLNNVLRALQ----DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 156 gr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.+.-.+.+++.+. ......|.++|+.|+||||+++.+....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 44445555555543 3456678999999999999999887654
No 82
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.70 E-value=0.0012 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998654
No 83
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.70 E-value=0.00089 Score=51.36 Aligned_cols=25 Identities=32% Similarity=0.471 Sum_probs=22.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999997653
No 84
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.69 E-value=0.0022 Score=52.98 Aligned_cols=28 Identities=14% Similarity=0.053 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|+|+|..|+|||||++.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4577999999999999999999876654
No 85
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.69 E-value=0.0011 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 86
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.69 E-value=0.0011 Score=50.52 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|.|.|++|+||||+++.+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988654
No 87
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.68 E-value=0.00089 Score=54.29 Aligned_cols=48 Identities=25% Similarity=0.238 Sum_probs=32.3
Q ss_pred cCCCcChHHHHHHHHHHhc---C---------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQ---D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...++|.+..++.+.+.+. . ...+-+-++|.+|+|||+||+.+.+...
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3457776655544444332 1 1233467999999999999999998764
No 88
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.68 E-value=0.0013 Score=50.76 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
....+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45779999999999999999998764
No 89
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.67 E-value=0.0012 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.735 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998664
No 90
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.67 E-value=0.0011 Score=50.32 Aligned_cols=26 Identities=42% Similarity=0.593 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...|.|+|++|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999987653
No 91
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.66 E-value=0.0011 Score=51.60 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+|.|+|+.|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35688999999999999999998765
No 92
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.66 E-value=0.003 Score=52.77 Aligned_cols=39 Identities=31% Similarity=0.303 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCC--CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 160 TLNNVLRALQDP--DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 160 ~~~~l~~~L~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+..++..+ ....+.|+|.+|+||||||+.+.+...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 344455544443 356789999999999999999998764
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.66 E-value=0.0016 Score=48.22 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=26.7
Q ss_pred HHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 166 RALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 166 ~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..|..-....+.|+|..|+|||||++.+++....
T Consensus 29 ~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3333325668999999999999999999987753
No 94
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.66 E-value=0.0045 Score=51.29 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=36.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHHHhCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP-HIPDIRKIQGEIADKLGLIF 232 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs-~~~~~~~l~~~i~~~l~~~~ 232 (250)
...+++++|.+|+||||++..+..-....... .+..+... ..+...+-+....+.++++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~ 164 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPL 164 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCe
Confidence 46799999999999999999988766432222 23334332 22334444444455555543
No 95
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.0013 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+|.|.|+.|+||||+++.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999887653
No 96
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.65 E-value=0.0027 Score=52.44 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=35.8
Q ss_pred CCcChHHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 153 AFESRSSTLNNVLRALQD---------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.++|.+..++.+...+.. .....+.++|.+|+||||+|+.+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 467888777777766652 1246889999999999999999998763
No 97
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.65 E-value=0.0012 Score=50.50 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.++|+|..|+|||||++.+.....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5799999999999999999987653
No 98
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.65 E-value=0.0016 Score=49.70 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|.++|++|+||||+++.+.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999987764
No 99
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.63 E-value=0.0037 Score=51.05 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=33.1
Q ss_pred CcCCCcChHHHHHHHHHHhc---C----------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQ---D----------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~---~----------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..+.++.+... . -..+ +.|+|..|+|||||++.+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHcC
Confidence 34567787765555443322 1 1223 88999999999999999998764
No 100
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.63 E-value=0.0012 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 101
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.63 E-value=0.0012 Score=55.48 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=35.9
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..+..+...+......-+-++|.+|+|||+||+.+.+...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456889887666554444443344488999999999999999998764
No 102
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.63 E-value=0.0014 Score=49.22 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+..+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999987764
No 103
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.63 E-value=0.0014 Score=51.23 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+|+|+|+.|+|||||++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345789999999999999999998765
No 104
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.62 E-value=0.0017 Score=50.30 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+|.|.|+.|+||||+++.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998764
No 105
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.62 E-value=0.0025 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+|.|+|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 106
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.61 E-value=0.00099 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=19.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~ 194 (250)
...+++|+|..|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35689999999999999999633
No 107
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.61 E-value=0.0013 Score=51.90 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999987654
No 108
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.60 E-value=0.0015 Score=50.06 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+|.|.|+.|+||||+++.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987653
No 109
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.60 E-value=0.0011 Score=51.42 Aligned_cols=25 Identities=32% Similarity=0.370 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998764
No 110
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.59 E-value=0.0096 Score=50.58 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=40.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIF 232 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~ 232 (250)
-.++.|.|.+|+|||||+.++.......+ ..++|++....++.. .+++++.+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~ 113 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDL 113 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCch
Confidence 46999999999999999999987764321 357888888877765 566666653
No 111
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.59 E-value=0.0015 Score=52.77 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|.|+|+.|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987753
No 112
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.57 E-value=0.0016 Score=52.28 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+|+|+|+.|+|||||++.+.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999996654
No 113
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.55 E-value=0.0072 Score=50.46 Aligned_cols=59 Identities=14% Similarity=0.267 Sum_probs=44.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC---------CC-----CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ---------FF-----DQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~---------~F-----d~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++-|.|.+|+|||||+.++........ .. ..++|++...+++...+.. ++..++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~ 169 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGID 169 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 346899999999999999999987643211 11 4789999999888887764 45667665
No 114
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.55 E-value=0.0016 Score=50.71 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
...+|+|+|+.|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998764
No 115
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.54 E-value=0.0078 Score=50.38 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=44.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCC----CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQF----FDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~----Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++.|+|.+|+|||||+.++......... =..++|++....++...+.. +++.++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~ 168 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLD 168 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCC
Confidence 3468999999999999999999877543211 24789999999888877764 45667664
No 116
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.54 E-value=0.0014 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.|+|++|+||||+++.+.....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987664
No 117
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.53 E-value=0.0018 Score=49.45 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
....|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999876
No 118
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.52 E-value=0.0017 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+|.|.|+.|+||||+++.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 119
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.52 E-value=0.0023 Score=53.24 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=35.0
Q ss_pred CCcChHHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 153 AFESRSSTLNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++|.+.....+.+.+. .....-+-|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 46788777777777665 2344556799999999999999999864
No 120
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.52 E-value=0.0019 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...|.+.|+.|+||||+++.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998755
No 121
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.52 E-value=0.0018 Score=49.13 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+++|+|..|+|||||+..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 467899999999999999999987754
No 122
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.51 E-value=0.0019 Score=49.27 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 123
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0048 Score=53.81 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=39.5
Q ss_pred CcCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 150 DYEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
....+.|.+..++.|.+.+. . ..++=|-++|++|+|||+||+.+.+....
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 35567889988888877644 2 24667789999999999999999988753
No 124
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0014 Score=50.88 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 125
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.49 E-value=0.002 Score=52.26 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..+|.|+|++|+||||+++.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 126
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.49 E-value=0.0019 Score=53.96 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP 212 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs 212 (250)
....+|+|+|..|+|||||++.+..-......-..+.+|.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 456799999999999999999998766432111234555443
No 127
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.49 E-value=0.0019 Score=52.06 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=23.9
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.....+|+|.|+.|+||||+++.+.....
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999987654
No 128
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.49 E-value=0.0021 Score=49.86 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
...|.|.|+.|+||||+++.+......
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 357999999999999999999987764
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.48 E-value=0.0015 Score=49.74 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|.|+|++|+||||+++.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.48 E-value=0.0098 Score=51.37 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=42.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC----CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ----FFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~----~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++.|+|.+|+|||||+..++-...... .-..++|+.....++...+. .+++.++.+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~ 239 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLD 239 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCC
Confidence 346899999999999999998875543321 22468889888777766554 366777654
No 131
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.46 E-value=0.0037 Score=53.16 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=36.4
Q ss_pred CCcChHHHHHHHHHHhc---------------CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 153 AFESRSSTLNNVLRALQ---------------DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.++|.+..++.+...+. ......+-++|.+|+|||++|+.+.+...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36888888888877772 11346788999999999999999998763
No 132
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.46 E-value=0.0018 Score=50.49 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 133
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.46 E-value=0.0014 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+|.|.|+.|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999987654
No 134
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.44 E-value=0.0018 Score=48.67 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|.|.|+.|+||||+++.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987653
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.43 E-value=0.0025 Score=49.29 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....|.|+|+.|+||||+++.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987653
No 136
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.43 E-value=0.012 Score=49.61 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=44.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC----CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ----FFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~----~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++.|.|.+|+|||||+.++........ .=..++|++....++...+.. ++..++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~ 183 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVD 183 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 346889999999999999999998754321 124789999999888877654 45666654
No 137
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.43 E-value=0.0018 Score=54.12 Aligned_cols=28 Identities=32% Similarity=0.720 Sum_probs=23.4
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++.+||+|.|-|||||||.+-++---..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA 73 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS 73 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH
Confidence 5789999999999999999988765553
No 138
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.43 E-value=0.0099 Score=50.39 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=40.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCC----CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFF----DQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~F----d~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++.|+|..|+|||||+..+.......... ..++|++-...+....+ ..++..++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~ 192 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLD 192 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCC
Confidence 45799999999999999999999875322111 24589988776654443 3455555543
No 139
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.42 E-value=0.0022 Score=49.07 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998866
No 140
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.42 E-value=0.0023 Score=50.29 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....|.+.|+.|+||||+++.+.....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346789999999999999999987654
No 141
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.41 E-value=0.0028 Score=50.02 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=25.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...++|.|.|++|+||||.|+.+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4678999999999999999999998875
No 142
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.41 E-value=0.0017 Score=51.20 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45688999999999999999998754
No 143
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.41 E-value=0.0024 Score=49.62 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998764
No 144
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.40 E-value=0.0023 Score=53.27 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=24.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+++|+|..|+|||||++.+..-..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 567999999999999999999987664
No 145
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.40 E-value=0.0019 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.|.|+|+.|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998764
No 146
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.40 E-value=0.0025 Score=51.12 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+|+|.|..|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999998754
No 147
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.40 E-value=0.003 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+|.++|++|+||||+++.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987653
No 148
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.39 E-value=0.0023 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
No 149
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.39 E-value=0.0045 Score=52.81 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=35.0
Q ss_pred CCcChHHHHHHHHHHhc------------------------------CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 153 AFESRSSTLNNVLRALQ------------------------------DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.++|.+..++.|...+. ......+-++|.+|+||||+|+.+.+...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788877777776652 11345678999999999999999998763
No 150
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.39 E-value=0.01 Score=46.56 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=37.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC----CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ----FFDQVIFVEVPHIPDIRKIQGEIADKLGL 230 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~----~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~ 230 (250)
.-.+++|+|..|+|||||++.+........ .-...+|+.-...+.... +..+++.++.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 346899999999999999999987543311 123577877655544433 2334444444
No 151
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.38 E-value=0.0026 Score=49.48 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=26.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCe
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQ 205 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~ 205 (250)
...+|.|.|+.|+||||+++.+.+.... .+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 3568999999999999999999987643 24554
No 152
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.38 E-value=0.0037 Score=52.36 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.+|+|.|..|+|||||++.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 566999999999999999999987654
No 153
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.37 E-value=0.0026 Score=49.49 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=25.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCe
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQ 205 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~ 205 (250)
..+|.|.|+.|+||||+++.+.+.... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999887543 24555
No 154
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.36 E-value=0.003 Score=48.91 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+-.+|+|+|+.|+||||+++.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999998763
No 155
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.34 E-value=0.0027 Score=47.55 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=23.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-.+++++|..|+|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455689999999999999999999865
No 156
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.34 E-value=0.0024 Score=51.51 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
....+|+|+|+.|+||||+++.+...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998743
No 157
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0071 Score=52.67 Aligned_cols=49 Identities=27% Similarity=0.286 Sum_probs=38.5
Q ss_pred cCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 151 YEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..++.|.+..++.|.+.+. . ..++=+-++|++|+|||+||+.+.+....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567888888888777654 1 24556789999999999999999988753
No 158
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.33 E-value=0.0065 Score=48.67 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=23.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....|.|.|++|+||||+++.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 466789999999999999999998765
No 159
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.30 E-value=0.0027 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...|.|.|+.|+||||+++.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999987653
No 160
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.29 E-value=0.0029 Score=52.26 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+..+-++|++|+|||+||+.+.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456788999999999999999999875
No 161
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.29 E-value=0.0078 Score=47.82 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=26.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCe
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQ 205 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~ 205 (250)
....|.|.|+.|+||||+++.+.+.... .+++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence 4568999999999999999999998864 4554
No 162
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.28 E-value=0.006 Score=53.64 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=36.0
Q ss_pred cCCCcChHHHHHHHHH---HhcCC--CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLR---ALQDP--DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~---~L~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...++|.+..++.+.. ++... ..+-+-++|++|+|||+||+.+.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3578898887665444 33332 335678999999999999999999875
No 163
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0069 Score=52.87 Aligned_cols=49 Identities=27% Similarity=0.438 Sum_probs=37.8
Q ss_pred cCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 151 YEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..++.|.+..++.|.+.+. . ..++=|-++|++|+|||+||+.|.+....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4557788887777766554 1 24567789999999999999999998753
No 164
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.28 E-value=0.0059 Score=53.45 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 160 TLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 160 ~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+..+....+ ...+.|+|.+|+||||||+.+++...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444444444443 67889999999999999999998764
No 165
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.27 E-value=0.0027 Score=50.23 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.-.+++|+|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999998754
No 166
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.27 E-value=0.0026 Score=53.24 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=35.9
Q ss_pred CCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 152 EAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..++|++..++.+...+... +-+-++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35788888888888777653 356799999999999999998865
No 167
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.27 E-value=0.003 Score=48.45 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 168
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.26 E-value=0.0014 Score=51.09 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|+|.|..|+||||+++.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999987764
No 169
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.26 E-value=0.0071 Score=53.69 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=37.6
Q ss_pred cCCCcChHHHHHHHHHHhc-------------CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 151 YEAFESRSSTLNNVLRALQ-------------DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...++|.+..++.|.+++. .....-+-|+|.+|+|||+||+.+.+..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3468899888888877664 2345568899999999999999998775
No 170
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.24 E-value=0.014 Score=49.03 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHHHhCCC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVP-HIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs-~~~~~~~l~~~i~~~l~~~ 231 (250)
....+++++|..|+||||+++.+..-..-. .. .+.++... ......+-++....+++.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g-~V~l~g~D~~r~~a~eql~~~~~~~gv~ 186 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GF-SVVIAASDTFRAGAIEQLEEHAKRIGVK 186 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TC-CEEEEEECCSSTTHHHHHHHHHHHTTCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CC-EEEEEeecccccchHHHHHHHHHHcCce
Confidence 467899999999999999999988766432 12 23333222 1223344444555566543
No 171
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.24 E-value=0.0031 Score=47.77 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+|.++|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998764
No 172
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.24 E-value=0.022 Score=48.29 Aligned_cols=53 Identities=28% Similarity=0.353 Sum_probs=39.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
.-.++.|.|.+|+|||||+.++.......+ ..++|++....++.. .+.+++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~-----~a~~lG~~ 112 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE-----YAKKLGVD 112 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH-----HHHHcCCC
Confidence 356899999999999999999886654221 368899998877754 25666655
No 173
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.22 E-value=0.0036 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 174
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.22 E-value=0.0033 Score=49.13 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999977653
No 175
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.22 E-value=0.0068 Score=51.48 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=29.2
Q ss_pred HHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 161 LNNVLRALQ--DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 161 ~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+++.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555555 5577899999999999999999987654
No 176
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.22 E-value=0.0031 Score=49.62 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...|.|.|+.|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988765
No 177
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.0026 Score=49.08 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+++|+|..|+|||||++.+....+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999987653
No 178
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.20 E-value=0.0034 Score=48.44 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...|.|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
No 179
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.19 E-value=0.012 Score=51.35 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=25.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRD 200 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~ 200 (250)
..+++|.++|.+|+||||++..+......+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999988766543
No 180
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.19 E-value=0.0037 Score=48.83 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|.|+|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999987653
No 181
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.17 E-value=0.016 Score=50.65 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.+.+|.++|.+|+||||++..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998876653
No 182
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.16 E-value=0.0037 Score=52.01 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|+|+|..|+|||||++.+..-..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999988653
No 183
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.16 E-value=0.0035 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.645 Sum_probs=21.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~ 194 (250)
....+|+|.|+.|+||||+++.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999987
No 184
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0037 Score=51.93 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+++++|..|+||||+++.+..-..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987654
No 185
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.15 E-value=0.0037 Score=48.90 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997665
No 186
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.13 E-value=0.0032 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~ 194 (250)
.-.+++|+|..|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45689999999999999999988
No 187
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0093 Score=51.40 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=37.8
Q ss_pred cCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 151 YEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..++.|.+..+++|.+.+. . ..++=+-++|++|+|||.||+.+.+....
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 4567788888777766544 1 24566789999999999999999988763
No 188
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.12 E-value=0.0053 Score=51.34 Aligned_cols=51 Identities=25% Similarity=0.366 Sum_probs=34.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEc--CCC-----CCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEV--PHI-----PDIRKIQGEIADKL 228 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~v--s~~-----~~~~~l~~~i~~~l 228 (250)
.+++-|+|++|+||||||.++..... ..++|+++ +.. .+.+.+++.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSGYNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhhhhcCHHHHHHHHHHHH
Confidence 35678999999999999999987621 23456666 211 35677666555444
No 189
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.11 E-value=0.0036 Score=50.20 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.. .+++|+|..|+|||||.+.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 899999999999999999998653
No 190
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.012 Score=51.52 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=38.3
Q ss_pred cCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 151 YEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
...+.|.+..++.|.+.+. . ..++=|-++|++|+|||+||+.|.+....
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 3457888888888776543 1 35667789999999999999999988763
No 191
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0033 Score=50.75 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
-.+|.|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999987553
No 192
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.05 E-value=0.03 Score=47.70 Aligned_cols=52 Identities=31% Similarity=0.369 Sum_probs=39.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLI 231 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~ 231 (250)
-.++-|.|.+|+|||||+.++.......+ ..++|++....++.. .+.+++.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-----~a~~~g~d 125 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVN 125 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-----HHHHcCCC
Confidence 45888999999999999999887654222 368999998887764 25566665
No 193
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.04 E-value=0.0035 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999987544
No 194
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.04 E-value=0.0023 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=16.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHH-HHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVA-IQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~-~~~ 197 (250)
...+++|+|+.|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 543
No 195
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.03 E-value=0.019 Score=47.89 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=38.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADK 227 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~ 227 (250)
.-.++.|.|.+|+|||||+.++..+.-.++ ..++|++.. -+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346889999999999999999987765433 578888766 3466666665543
No 196
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.03 E-value=0.0045 Score=47.09 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998764
No 197
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.03 E-value=0.0021 Score=48.82 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.+++|+|..|+|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999998876543
No 198
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.03 E-value=0.0043 Score=47.99 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987643
No 199
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.01 E-value=0.0044 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.++|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 200
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.00 E-value=0.0033 Score=49.86 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999988543
No 201
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.98 E-value=0.0033 Score=49.27 Aligned_cols=25 Identities=40% Similarity=0.347 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.-.+++|+|..|+|||||++.+..-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458899999999999999999865
No 202
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.94 E-value=0.015 Score=48.52 Aligned_cols=55 Identities=9% Similarity=-0.024 Sum_probs=41.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIFF 233 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~~ 233 (250)
+++-|.|.+|+|||||+-++.....-...=..++|++..++++.. -++++|.+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d 83 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPE 83 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHH
Confidence 378899999999999998887665421112478999998888864 3788887754
No 203
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.92 E-value=0.022 Score=45.22 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
-..++|.|++|+||||+++.+.+....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCC
Confidence 346799999999999999999987753
No 204
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0054 Score=52.22 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+++|+|..|+||||+++.+..-..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 457999999999999999999987764
No 205
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.92 E-value=0.0056 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 206
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.016 Score=50.24 Aligned_cols=49 Identities=31% Similarity=0.390 Sum_probs=38.0
Q ss_pred cCCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 151 YEAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..++.|.+..+++|.+.+. . ..++=|-++|++|+|||.||+.+.+....
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 4567788887777766543 2 24567889999999999999999988763
No 207
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.0056 Score=50.94 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|.|+|.+|+||||++..+.....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 3467999999999999999999887664
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.90 E-value=0.021 Score=49.77 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
...+|.++|.+|+||||++..+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998876653
No 209
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.90 E-value=0.0039 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988543
No 210
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.89 E-value=0.0048 Score=49.77 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.-.+++|+|..|+|||||++.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999974
No 211
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.89 E-value=0.0056 Score=48.05 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..|.|.|++|+||||+++.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987764
No 212
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.88 E-value=0.005 Score=47.39 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...++|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998763
No 213
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.88 E-value=0.006 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+|.|.|+.|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987664
No 214
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.88 E-value=0.0057 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 215
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.88 E-value=0.0047 Score=49.43 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 216
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.86 E-value=0.0068 Score=47.41 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhc
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+|.+.|++|+||+|.|+.+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998875
No 217
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.86 E-value=0.0064 Score=45.75 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=27.3
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHH
Q 036637 161 LNNVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 161 ~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
..++++.+.+ .....|.|+|.+|+|||||...+.+
T Consensus 5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3445555565 5667789999999999999998874
No 218
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.85 E-value=0.013 Score=51.67 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=34.4
Q ss_pred cCCCcChHHHHHHHHHH---hcCC---------CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRA---LQDP---------DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+.|.+..++++.+. +... -++-+.++|++|+||||||+.+.+...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34678887766555544 3221 233477999999999999999998775
No 219
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.85 E-value=0.0042 Score=49.76 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 220
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.84 E-value=0.0057 Score=54.40 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=35.4
Q ss_pred CCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 152 EAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..++|.+..++.+...+... .-+-++|.+|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 35788888888877776644 356799999999999999998755
No 221
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.83 E-value=0.0052 Score=50.09 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.-.+++|+|..|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999974
No 222
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.83 E-value=0.0043 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999987544
No 223
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.82 E-value=0.0049 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999987543
No 224
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.82 E-value=0.0044 Score=49.27 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 225
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.81 E-value=0.0061 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 226
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.80 E-value=0.011 Score=53.07 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=34.5
Q ss_pred CCcChHHHHHHHHHHhc------CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 153 AFESRSSTLNNVLRALQ------DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.++|.+.-++.+.+.+. +-....+.++|.+|+||||||+.+.+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46777766666554433 23456899999999999999999998763
No 227
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.79 E-value=0.0064 Score=49.36 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-.+++|+|..|+|||||++.+..-.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 456799999999999999999987643
No 228
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.79 E-value=0.0049 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988653
No 229
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0091 Score=45.23 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 161 LNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
+.++.+ +.......|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 345566 45566677899999999999999999854
No 230
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.78 E-value=0.004 Score=49.02 Aligned_cols=26 Identities=42% Similarity=0.577 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44588999999999999999998654
No 231
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.77 E-value=0.0047 Score=50.26 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 55689999999999999999988644
No 232
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.76 E-value=0.0048 Score=49.70 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987654
No 233
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.76 E-value=0.0073 Score=47.90 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...|.+.|+.|+||||+++.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987764
No 234
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.76 E-value=0.0069 Score=51.07 Aligned_cols=25 Identities=40% Similarity=0.476 Sum_probs=22.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+|+|+|+.|+||||||+.+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999987753
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.75 E-value=0.0069 Score=53.61 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+++|+|..|+|||||++.+..-..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 467999999999999999999987654
No 236
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.75 E-value=0.0061 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++|+|..|+|||||.+.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999765
No 237
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.75 E-value=0.021 Score=48.52 Aligned_cols=44 Identities=32% Similarity=0.408 Sum_probs=33.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDI 217 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~ 217 (250)
.-.++.|.|.+|+||||||.++.......+ ..++|++....++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~ 105 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDP 105 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccH
Confidence 346889999999999999999887654322 35788888776654
No 238
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.75 E-value=0.0076 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..|.++|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457999999999999999988654
No 239
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.74 E-value=0.0055 Score=49.92 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999988643
No 240
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.73 E-value=0.0098 Score=44.97 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=25.2
Q ss_pred HHHhcC--CCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 165 LRALQD--PDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 165 ~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
++.+.. .....|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 444444 45667899999999999999998765
No 241
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.73 E-value=0.0066 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998763
No 242
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.72 E-value=0.005 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998653
No 243
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.72 E-value=0.01 Score=47.70 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356888999999999999999987665
No 244
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.72 E-value=0.0038 Score=51.57 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=20.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+|+|.|..|+||||+++.+.+..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999988753
No 245
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.71 E-value=0.0075 Score=50.49 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|+|+|.+|+||||++..+..-..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999876654
No 246
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.71 E-value=0.0066 Score=44.51 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.++|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 247
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.71 E-value=0.0051 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998654
No 248
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.70 E-value=0.0052 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999997643
No 249
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.69 E-value=0.008 Score=52.56 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=36.6
Q ss_pred CCCcChHHHHHHHHHHhcC--------------CCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 152 EAFESRSSTLNNVLRALQD--------------PDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..++|.+..++.+...+.. ...+-|-++|++|+||||+|+.+......
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3578888888777666521 13456889999999999999999987753
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.67 E-value=0.0049 Score=58.14 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=35.3
Q ss_pred cCCCcChHHHHHHHHHHhc-------------CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 151 YEAFESRSSTLNNVLRALQ-------------DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...++|.+..+++|.+++. -....-+.++|.+|+||||||+.+.+..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3457887777766666553 1345578999999999999999998764
No 251
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.67 E-value=0.015 Score=51.09 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 157 RSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 157 r~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
....+..++.++.+.+ +.+.|.|.+|+||||++..+......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3445555555655443 38899999999999999998877753
No 252
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.66 E-value=0.0071 Score=44.61 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999999998754
No 253
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.66 E-value=0.0055 Score=49.91 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999988643
No 254
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.65 E-value=0.0079 Score=47.14 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=33.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGL 230 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~ 230 (250)
-.++.|+|..|+|||||++.+.......+ ..++|+.... ....+...+ .+++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~-~~~~~ 75 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQA-KQFNW 75 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHH-HHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHH-HHhcc
Confidence 46889999999999999999986543211 2455655433 344444433 24443
No 255
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.65 E-value=0.0056 Score=49.36 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34588999999999999999987643
No 256
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.63 E-value=0.0084 Score=46.33 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 161 LNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+.+-+.......-.|.|+|.+|+|||||+..+.++.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3333343444555677999999999999999888754
No 257
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.62 E-value=0.0063 Score=46.14 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~ 195 (250)
-|+|+|.+|+|||||++.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 258
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.61 E-value=0.0058 Score=50.15 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999988654
No 259
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.61 E-value=0.0067 Score=45.90 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..|+++|.+|+|||||+..+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 260
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.60 E-value=0.0058 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998654
No 261
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.60 E-value=0.0091 Score=47.44 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+|+|+|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999988654
No 262
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.60 E-value=0.0074 Score=50.16 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.-.+++|+|..|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456789999999999999999998765
No 263
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.59 E-value=0.0077 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-.|.++|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998765
No 264
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.58 E-value=0.0098 Score=47.39 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...|.|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998763
No 265
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.55 E-value=0.008 Score=49.71 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=23.8
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|+|+|-||+||||++..+..-..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La 66 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS 66 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH
Confidence 45788999999999999999998876654
No 266
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.55 E-value=0.013 Score=45.07 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=24.2
Q ss_pred HHHHh-cCCCceEEEEEccCCCCHHHHHHHHHH
Q 036637 164 VLRAL-QDPDVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 164 l~~~L-~~~~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
+++.+ .......|+++|.+|+|||||+..+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 44444 244455689999999999999999874
No 267
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.54 E-value=0.0092 Score=49.33 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+++++|.+|+||||++..+..-..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987764
No 268
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.54 E-value=0.022 Score=50.55 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=34.3
Q ss_pred CcCCCcChHHHHHHHHHH---hcCC---------CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRA---LQDP---------DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+.|.+..+.++.+. +.+. -.+=+.++|.+|+||||||+.+.+...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688887665555443 3221 122388999999999999999998764
No 269
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.53 E-value=0.0085 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-|.++|.+|+|||||+..+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999998765
No 270
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.52 E-value=0.052 Score=48.22 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+|.|+|.+|+||||++..+.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999886654
No 271
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.52 E-value=0.0094 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=22.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+|.|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998765
No 272
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.52 E-value=0.025 Score=45.10 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=34.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIA 225 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~ 225 (250)
...|.|.|..|+||||+++.+.+..... .+.......-+......+.++.++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887643 466444443332223334444444
No 273
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.52 E-value=0.02 Score=49.07 Aligned_cols=28 Identities=29% Similarity=0.108 Sum_probs=24.2
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-....+++|+|+.|+|||||++.+....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456799999999999999999999754
No 274
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.52 E-value=0.0087 Score=44.08 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 275
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.51 E-value=0.0093 Score=43.86 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998765
No 276
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.50 E-value=0.014 Score=53.27 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=37.0
Q ss_pred CcCCCcChHHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 150 DYEAFESRSSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....++|.+..++.+...+... ..+.|+|..|+||||||+.+..-..
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3456889888787766666544 5789999999999999999988653
No 277
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.50 E-value=0.0085 Score=45.47 Aligned_cols=24 Identities=33% Similarity=0.209 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.--|.|+|.+|+|||||++.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 346799999999999999877654
No 278
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.011 Score=44.82 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....|.|+|.+|+|||||+..+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999988754
No 279
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.45 E-value=0.0092 Score=51.82 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....+|.|+|++|+||||+++.+....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467899999999999999999987543
No 280
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.45 E-value=0.0059 Score=48.40 Aligned_cols=25 Identities=32% Similarity=0.155 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
...+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998765
No 281
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.45 E-value=0.01 Score=45.34 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=20.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.....|.++|.+|+|||||...+.++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999874
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.43 E-value=0.03 Score=48.64 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=36.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHH--HHHHHHHHHhCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIR--KIQGEIADKLGLI 231 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~--~l~~~i~~~l~~~ 231 (250)
...+|.++|.+|+||||++..+..-.... .. .+..+.. ..+... +-+.....+.+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~-~Vllvd~-D~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GR-RPLLVAA-DTQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TC-CEEEEEC-CSSCHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CC-eEEEeec-cccCchhHHHHHHhcccCCcc
Confidence 46799999999999999999998777533 22 2333332 333332 2244455566665
No 283
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.42 E-value=0.0096 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467999999999999999998764
No 284
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.42 E-value=0.015 Score=48.42 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCC---CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 159 STLNNVLRALQDP---DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 159 ~~~~~l~~~L~~~---~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+..+.+++... ...-+-++|.+|+|||+||..+++...
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444555555521 246788999999999999999998765
No 285
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.41 E-value=0.026 Score=46.63 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..+++++|.+|+||||++..+.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999887664
No 286
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.40 E-value=0.01 Score=43.61 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.|+|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999988664
No 287
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.40 E-value=0.016 Score=50.40 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=27.6
Q ss_pred HHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 163 NVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 163 ~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.+. ....-.+++|+|..|+|||||++.+.....
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 33343 446667999999999999999999987664
No 288
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.39 E-value=0.0091 Score=48.72 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=30.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCC--------CCCeEEEEEcCCCC
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQ--------FFDQVIFVEVPHIP 215 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~--------~Fd~~~wv~vs~~~ 215 (250)
.-.++.|+|.+|+|||||+..+........ .-..++|+++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH
Confidence 346899999999999999999886543210 01346677776543
No 289
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.39 E-value=0.023 Score=44.97 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADK 227 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~ 227 (250)
.....|.+.|..|+||||+++.+.+.......+++.....-+......+.+++++..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~ 75 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFK 75 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhC
Confidence 356789999999999999999999877541234544322222233345556666553
No 290
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.38 E-value=0.0079 Score=48.92 Aligned_cols=24 Identities=38% Similarity=0.375 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
-.+++|+|..|+|||||.+.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458899999999999999999854
No 291
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.38 E-value=0.01 Score=43.76 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.++|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988765
No 292
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.38 E-value=0.011 Score=48.70 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=35.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADK 227 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~ 227 (250)
..-.+++|+|.+|+|||||++.+......... ..++|+.... +..++.+.++..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcC--CHHHHHHHHHHH
Confidence 34568999999999999999999877643211 1455665443 345555554433
No 293
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.37 E-value=0.01 Score=43.80 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998765
No 294
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.37 E-value=0.01 Score=44.91 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998764
No 295
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.35 E-value=0.013 Score=43.78 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345678999999999999999987643
No 296
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.35 E-value=0.01 Score=44.31 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...-|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 44568999999999999999988754
No 297
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.34 E-value=0.0096 Score=50.61 Aligned_cols=26 Identities=35% Similarity=0.279 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45688999999999999999998654
No 298
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.34 E-value=0.0085 Score=44.99 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 467999999999999999998653
No 299
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.34 E-value=0.035 Score=43.54 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
..|.+-|..|+||||+++.+.+..... .+..+++..-+....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887643 3433333333233335566666665
No 300
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.33 E-value=0.0098 Score=49.68 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...++.|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999999754
No 301
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.33 E-value=0.011 Score=44.23 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...-|.|+|..|+|||||+..+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999998764
No 302
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.0088 Score=44.21 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|.+|+|||||+..+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998643
No 303
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.31 E-value=0.012 Score=44.53 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
.++.+|+|..|+|||||+..|+-
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34889999999999999999975
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.29 E-value=0.011 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467999999999999999998654
No 305
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.29 E-value=0.014 Score=43.38 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987543
No 306
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.28 E-value=0.011 Score=43.48 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998753
No 307
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.27 E-value=0.011 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567999999999999998877654
No 308
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.27 E-value=0.014 Score=45.35 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....|.++|.+|+|||||+..+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998765
No 309
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.27 E-value=0.011 Score=43.94 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|.+|+|||||+..+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998765
No 310
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.27 E-value=0.011 Score=50.47 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-.+++|+|..|+|||||++.+..-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 355689999999999999999988644
No 311
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.27 E-value=0.0089 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.26 E-value=0.012 Score=44.71 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....|.|+|.+|+|||||...+.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356678999999999999999987543
No 313
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.26 E-value=0.012 Score=43.49 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 457999999999999999987654
No 314
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.24 E-value=0.01 Score=43.71 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.5
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~ 195 (250)
-|.++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998853
No 315
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.23 E-value=0.014 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
....+++|+|..|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 4567999999999999999999987
No 316
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.22 E-value=0.017 Score=48.03 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+|.|+|+.|+|||||+..+....
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 345789999999999999999998765
No 317
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.22 E-value=0.012 Score=44.71 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4567999999999999999988765
No 318
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.21 E-value=0.014 Score=49.52 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+++|+|..|+|||||++.+..-.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445599999999999999999886543
No 319
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.21 E-value=0.014 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..+|.|+|+.|+|||||+..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999998654
No 320
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.013 Score=44.60 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3467999999999999999998876
No 321
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.20 E-value=0.012 Score=48.13 Aligned_cols=26 Identities=35% Similarity=0.699 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.++|+|.|-||+||||++..+..-..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La 27 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH
Confidence 47899999999999999999876664
No 322
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.20 E-value=0.014 Score=43.04 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.7
Q ss_pred eEEEEEccCCCCHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~ 194 (250)
--|.|+|.+|+|||||+..+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999985
No 323
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.20 E-value=0.011 Score=50.09 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 324
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.20 E-value=0.012 Score=47.63 Aligned_cols=25 Identities=40% Similarity=0.708 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
++|+|.|-||+||||++..+..-..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la 26 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH 26 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH
Confidence 5788999999999999999887765
No 325
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.20 E-value=0.011 Score=45.09 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=23.8
Q ss_pred HhcCCCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 167 ALQDPDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 167 ~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.+.....--|.|+|.+|+|||||+..+.+.
T Consensus 23 ~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 23 RIFGKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp GTTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred HhccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 344455567899999999999999998643
No 326
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.19 E-value=0.013 Score=43.40 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467999999999999999997654
No 327
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.19 E-value=0.014 Score=49.36 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.+..+|+|+|.+|+|||||...+...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999864
No 328
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.19 E-value=0.052 Score=42.50 Aligned_cols=52 Identities=17% Similarity=0.106 Sum_probs=33.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
...|.+-|+.|+||||+++.+.+..... .+++.. ..-+......+.+++++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~-~~~p~~~~~g~~i~~~l~ 57 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQL-TREPGGTPLAERIRELLL 57 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEE-EESSCSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCccc-ccCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999887643 455532 222222223344555544
No 329
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.18 E-value=0.01 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.--|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998754
No 330
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.17 E-value=0.01 Score=49.25 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~ 195 (250)
-|+|+|..|+|||||++.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999999874
No 331
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.15 E-value=0.013 Score=44.01 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..--|.|+|.+|+|||||+..+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567999999999999999998764
No 332
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.14 E-value=0.013 Score=44.09 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.++.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3567899999999999999998765
No 333
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.13 E-value=0.013 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|.+|+|||||+..+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998765
No 334
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.13 E-value=0.013 Score=44.51 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|..|+|||||+..+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999988754
No 335
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.12 E-value=0.012 Score=49.96 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45688999999999999999998654
No 336
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.12 E-value=0.013 Score=43.93 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998655
No 337
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.11 E-value=0.013 Score=49.98 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45688999999999999999998654
No 338
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.10 E-value=0.014 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998754
No 339
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.10 E-value=0.013 Score=50.27 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45688999999999999999998654
No 340
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.10 E-value=0.014 Score=43.84 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.++|.+|+|||||+..+.++.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999988654
No 341
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.09 E-value=0.014 Score=44.20 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....|.|+|..|+|||||+..+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999998764
No 342
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.09 E-value=0.0079 Score=50.02 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-.+++|+|..|+|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356689999999999999999987644
No 343
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.08 E-value=0.014 Score=43.78 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|.+|+|||||+..+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568999999999999999998765
No 344
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.08 E-value=0.017 Score=48.73 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
-....+++|+|..|+|||||.+.+..-
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999999999999854
No 345
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.07 E-value=0.014 Score=43.65 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999987654
No 346
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.07 E-value=0.013 Score=50.09 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 44688999999999999999998654
No 347
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.07 E-value=0.016 Score=43.74 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 165 LRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 165 ~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
++.+.. ....-|.|+|.+|+|||||+..+.+..
T Consensus 9 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 9 LKKMKQKERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp --------CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred HHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 333444 556678999999999999999988654
No 348
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.06 E-value=0.014 Score=43.40 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|..|+|||||+..+.++.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999998654
No 349
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.05 E-value=0.014 Score=44.53 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...--|.|+|.+|+|||||+..+.+..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 344568999999999999999998764
No 350
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.05 E-value=0.031 Score=52.32 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=36.2
Q ss_pred CCCcChHHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 152 EAFESRSSTLNNVLRALQD---------PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..++|.+..++.+.+.+.. .....+-++|.+|+|||++|+.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578988888777776651 123368999999999999999999875
No 351
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.05 E-value=0.014 Score=43.58 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-|.|+|.+|+|||||+..+.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999988764
No 352
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.04 E-value=0.016 Score=48.78 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+|.|+|+.|+|||||+..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998654
No 353
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.04 E-value=0.0099 Score=51.89 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+.+|.|+|.+|+||||++..+.....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999877653
No 354
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.04 E-value=0.013 Score=49.94 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...++|+|..|+|||||++.+..-..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999987654
No 355
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.02 E-value=0.031 Score=49.75 Aligned_cols=45 Identities=7% Similarity=-0.054 Sum_probs=32.9
Q ss_pred cChHHHHHHHHHHh--cCCCceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 155 ESRSSTLNNVLRAL--QDPDVNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 155 ~gr~~~~~~l~~~L--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
..+..-.+.+.+.. ..+...+|.+.|+.|+||||+++.+......
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34444445555544 2345678999999999999999999998864
No 356
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.02 E-value=0.014 Score=49.95 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45688999999999999999998654
No 357
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.02 E-value=0.014 Score=44.09 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988654
No 358
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.01 E-value=0.01 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.++|.+|+|||||+..+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 457899999999999999988753
No 359
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.00 E-value=0.016 Score=44.30 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998753
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.015 Score=43.36 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.--|.++|.+|+|||||+..+.+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 34679999999999999999887553
No 361
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.99 E-value=0.015 Score=44.52 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...-|.|+|.+|+|||||+..+.++.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568999999999999999988765
No 362
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.99 E-value=0.015 Score=44.18 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|..|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4468999999999999999998764
No 363
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.015 Score=44.24 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|..|+|||||+..+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998765
No 364
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.98 E-value=0.023 Score=48.58 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-....+++|+|..|+|||||++.+..-.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3556789999999999999999987643
No 365
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.97 E-value=0.015 Score=44.57 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999988765
No 366
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.97 E-value=0.014 Score=43.60 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..--|.|+|.+|+|||||+..+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456799999999999999998754
No 367
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.96 E-value=0.014 Score=45.53 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+|+|+|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999887654
No 368
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.96 E-value=0.011 Score=45.35 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVA 194 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~ 194 (250)
....|.|+|.+|+|||||+..+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999984
No 369
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.96 E-value=0.027 Score=46.60 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 161 LNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+++|.+.+. -.+++++|..|+|||||++.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455666554 3588999999999999999998 54
No 370
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.95 E-value=0.016 Score=44.55 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...-|.|+|.+|+|||||+..+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45578999999999999999998765
No 371
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.95 E-value=0.008 Score=46.44 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=21.7
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHH
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
-.....++|+|..|+|||||.+.+..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34456789999999999999998764
No 372
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.94 E-value=0.039 Score=46.48 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....+|+|+|.+|+|||||+..+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999987554
No 373
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.94 E-value=0.016 Score=43.94 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467999999999999999998755
No 374
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.94 E-value=0.016 Score=44.93 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...-|.|+|.+|+|||||+..+.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998764
No 375
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.93 E-value=0.016 Score=44.87 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999998765
No 376
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.93 E-value=0.024 Score=44.25 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=27.4
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 161 LNNVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 161 ~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+..+..++.. +..+.+.++|++|+||||+|..+.+...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444443 2234689999999999999999888763
No 377
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.92 E-value=0.018 Score=45.53 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=31.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGE 223 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~ 223 (250)
-.++.|.|.+|+|||||+.++....... =..++|++...+ ..++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH
Confidence 4588999999999999988876554211 135677765543 3444433
No 378
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.91 E-value=0.012 Score=44.98 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..-|.++|.+|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456799999999999999977763
No 379
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.016 Score=44.72 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|.+|+|||||+..+.+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999987654
No 380
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.89 E-value=0.069 Score=44.24 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHhcCC--CCCCeEEEEEcCC-CCCHHHHHHHHHHHh
Q 036637 158 SSTLNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQFGRD--QFFDQVIFVEVPH-IPDIRKIQGEIADKL 228 (250)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~--~~Fd~~~wv~vs~-~~~~~~l~~~i~~~l 228 (250)
+...+.|...+..+.....-++|+.|+||||+|+.+.+..... .+.|. .++..+. ...+.++ +.+++.+
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFL 74 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHH
Confidence 4445666776765557788899999999999999998753211 23444 4455443 4444443 4455555
No 381
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.88 E-value=0.017 Score=43.95 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..--|.++|.+|+|||||+..+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34567999999999999999998765
No 382
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.017 Score=43.97 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...-|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 34568999999999999999998754
No 383
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.85 E-value=0.017 Score=43.77 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|..|+|||||+..+.++.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998765
No 384
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.85 E-value=0.017 Score=48.86 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=27.2
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 164 VLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 164 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.++-++. ..-.+++|+|..|+|||||++.+.+...
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444432 3456889999999999999999999865
No 385
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.85 E-value=0.018 Score=43.80 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|..|+|||||+..+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999988654
No 386
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.84 E-value=0.017 Score=47.75 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....|+|+|.+|+|||||...+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34689999999999999999998653
No 387
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.83 E-value=0.018 Score=43.62 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998765
No 388
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.81 E-value=0.018 Score=43.59 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|..|+|||||+..+.+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999988654
No 389
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.80 E-value=0.013 Score=44.78 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4567899999999999999987554
No 390
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.79 E-value=0.011 Score=49.99 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 44689999999999999999998654
No 391
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.78 E-value=0.022 Score=50.89 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....+|.++|++|+||||+++.+....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999997665
No 392
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.019 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|.+|+|||||+..+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999998764
No 393
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.75 E-value=0.019 Score=43.96 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+...-|.|+|.+|+|||||+..+.+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 345678999999999999999987654
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.73 E-value=0.016 Score=44.44 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999988654
No 395
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.73 E-value=0.014 Score=44.81 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=20.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..--|.|+|.+|+|||||+..+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34567999999999999999987543
No 396
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.72 E-value=0.018 Score=49.52 Aligned_cols=26 Identities=31% Similarity=0.366 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..-.+++|+|..|+|||||.+.+..-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 35568899999999999999999853
No 397
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.69 E-value=0.02 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|.+|+|||||+..+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467999999999999999988754
No 398
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.02 Score=44.19 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|.+|+|||||+..+.++.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988753
No 399
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.67 E-value=0.03 Score=50.35 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+|.|+|+.|+|||||++.+.....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457899999999999999999998764
No 400
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.66 E-value=0.022 Score=53.42 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=43.8
Q ss_pred CCCcChHHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEc----CCC
Q 036637 152 EAFESRSSTLNNVLRALQ----D---------PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEV----PHI 214 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~v----s~~ 214 (250)
..+.|.+..+++|.+++. . ..++=|-++|++|+|||+||+.|.+.... ..+.|.. +..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKL 278 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHHHHSSC
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHHhhccc
Confidence 345666655555544432 2 24567889999999999999999976542 1233432 222
Q ss_pred C-CHHHHHHHHHHHh
Q 036637 215 P-DIRKIQGEIADKL 228 (250)
Q Consensus 215 ~-~~~~l~~~i~~~l 228 (250)
. .-+..++.++...
T Consensus 279 ~gese~~lr~lF~~A 293 (806)
T 3cf2_A 279 AGESESNLRKAFEEA 293 (806)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 2 2344566666654
No 401
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.65 E-value=0.019 Score=45.11 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....|.|+|.+|+|||||+..+.+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445678999999999999999987653
No 402
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.63 E-value=0.031 Score=43.43 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=36.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCC-eEEEEEcCCCCCHHHHHHH-HHHHhCCCCC
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFD-QVIFVEVPHIPDIRKIQGE-IADKLGLIFF 233 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd-~~~wv~vs~~~~~~~l~~~-i~~~l~~~~~ 233 (250)
....+|+|+||.|+||+|.|..+-+... |+ +.+ +.+.+.++. .+...|++.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g----~~~~~v-------v~msD~iK~~~a~~~gl~~~ 62 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLG----ADVCAV-------LRLSGPLKEQYAQEHGLNFQ 62 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHC----TTTEEE-------ECTHHHHHHHHHHTTTCCCC
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcC----CCCceE-------EEccHHHHHHHHHHcCCCch
Confidence 4567999999999999999998866442 11 211 356677764 5677776643
No 403
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.63 E-value=0.024 Score=49.90 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|.++|++|+||||+++.+.....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556889999999999999999987654
No 404
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.021 Score=43.35 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-|.|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 405
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.62 E-value=0.01 Score=50.39 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45688999999999999999998644
No 406
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.60 E-value=0.016 Score=45.13 Aligned_cols=26 Identities=35% Similarity=0.275 Sum_probs=20.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..--|.|+|.+|+|||||+..+.+..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999987543
No 407
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.60 E-value=0.011 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=10.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|.+|+|||||+..+.++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEEECCCCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999887553
No 408
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.59 E-value=0.025 Score=48.72 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+|.|+|+.|+|||||+..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 588999999999999999998765
No 409
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.57 E-value=0.049 Score=50.90 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=35.6
Q ss_pred CCCcChHHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 152 EAFESRSSTLNNVLRALQD---------PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 152 ~~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..++|.+..++.+...+.. .....+-++|.+|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3477888877777766551 133478999999999999999999876
No 410
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.55 E-value=0.025 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998654
No 411
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.55 E-value=0.036 Score=45.81 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 161 LNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
++++.+.+. -.+++++|..|+|||||.+.+....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 455555554 3588999999999999999987543
No 412
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.55 E-value=0.021 Score=45.34 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.....|+++|..|+|||||...+.....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3456789999999999999999886543
No 413
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.55 E-value=0.023 Score=43.65 Aligned_cols=25 Identities=28% Similarity=0.221 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|.+|+|||||+..+.++.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999988754
No 414
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.54 E-value=0.018 Score=49.04 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44588999999999999999998654
No 415
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.54 E-value=0.023 Score=43.78 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-|.|+|.+|+|||||+..+.+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4567999999999999999988654
No 416
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.53 E-value=0.023 Score=43.69 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..--|.|+|.+|+|||||+..+.+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 34578999999999999999987654
No 417
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.52 E-value=0.023 Score=43.88 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999988654
No 418
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.52 E-value=0.028 Score=42.96 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=19.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++.++|..|+||||++..+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 477899999999999986666554
No 419
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.50 E-value=0.023 Score=47.13 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+.|+|+|.+|+|||||...+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356789999999999999999988654
No 420
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.49 E-value=0.018 Score=43.34 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-.|.|+|..|+|||||...+.+..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999998653
No 421
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.47 E-value=0.026 Score=42.92 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....|.|+|.+|+|||||+..+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999987543
No 422
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.02 Score=50.38 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..-.+++|+|..|+|||||++.++.-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345678999999999999999988743
No 423
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.46 E-value=0.024 Score=44.08 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467899999999999999988764
No 424
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.45 E-value=0.029 Score=43.53 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
.+|.|.|+.|+||||+++.+......
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999887653
No 425
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.44 E-value=0.014 Score=47.07 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....|.|.|..|+||||+++.+.+..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999877543
No 426
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.41 E-value=0.02 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.4
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~ 196 (250)
++|+|..|+|||||++.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999764
No 427
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.38 E-value=0.025 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+++|+|..|+|||||++.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 5889999999999999999986543
No 428
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.34 E-value=0.025 Score=44.20 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
...-|.|+|.+|+|||||+..+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998863
No 429
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.32 E-value=0.034 Score=41.96 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.4
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
...--|.|+|.+|+|||||+..+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4556789999999999999999854
No 430
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.28 E-value=0.025 Score=43.06 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=19.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
--|.|+|..|+|||||+..+.++.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999987554
No 431
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.28 E-value=0.099 Score=41.02 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=24.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
...|.+-|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457899999999999999999998864
No 432
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.28 E-value=0.059 Score=42.60 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=29.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRK 219 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~ 219 (250)
.|+|.|-||+||||++..+..-....+ ..++-|......+...
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 367799999999999999988776433 2345555544344443
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.24 E-value=0.028 Score=49.11 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
..-..++|+|..|+|||||++.+.+-..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3456889999999999999999998865
No 434
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.23 E-value=0.091 Score=40.54 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=32.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADK 227 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~ 227 (250)
|+|=|.-|+||||.++.+++..+.++ .+ +++..-+......+.++.++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhhc
Confidence 67889999999999999998876432 23 3333333333455555555543
No 435
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.23 E-value=0.067 Score=48.39 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=24.5
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+...+|.|.|+.|+||||+|+.+.....
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999999987654
No 436
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.21 E-value=0.032 Score=47.20 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=24.1
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+++.+.|-||+||||+|..+..-..
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 45678999999999999999998776554
No 437
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.21 E-value=0.024 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-|.|+|-+|+|||+|+....++.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 47899999999999999877543
No 438
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.18 E-value=0.034 Score=44.64 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999987654
No 439
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.16 E-value=0.031 Score=44.22 Aligned_cols=31 Identities=23% Similarity=0.007 Sum_probs=23.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCe
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQ 205 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~ 205 (250)
-.|.+.|.||+||||++-.+......+ .++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V 37 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRV 37 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCCE
Confidence 347789999999999988888776533 3454
No 440
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.13 E-value=0.028 Score=43.17 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=20.5
Q ss_pred eEEEEE-ccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIY-GMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~-G~gGvGKTtLa~~v~~~~~ 198 (250)
++|+|+ +-||+||||++..+..-..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la 27 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS 27 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 578888 6789999999999876654
No 441
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.11 E-value=0.034 Score=43.99 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=22.8
Q ss_pred CceEEEEEc-cCCCCHHHHHHHHHHHhcC
Q 036637 172 DVNMVGIYG-MGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 172 ~~~vi~I~G-~gGvGKTtLa~~v~~~~~v 199 (250)
..++|+|++ -||+||||++..+..-...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~ 31 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQ 31 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHh
Confidence 457888885 5789999999999877754
No 442
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.15 E-value=0.0089 Score=46.01 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=22.8
Q ss_pred hcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 168 LQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 168 L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.....--|.|+|.+|+|||||+..+.++.
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 334455567999999999999997776543
No 443
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.09 E-value=0.06 Score=43.54 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=26.8
Q ss_pred HHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 161 LNNVLRALQD--PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 161 ~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.++++.+.. .....|.++|.+|+|||||...+++..
T Consensus 25 l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444442 245678999999999999999998655
No 444
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.07 E-value=0.07 Score=42.96 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=27.0
Q ss_pred HHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 161 LNNVLRALQD--PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 161 ~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.++++.+.. .....|+++|..|+|||||+..+.+..
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444442 345678999999999999999998755
No 445
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.06 E-value=0.06 Score=51.09 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=35.2
Q ss_pred CCcChHHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 153 AFESRSSTLNNVLRALQD---------PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++|.+..++.+...+.. .....+-++|..|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 468888877777666541 123578899999999999999998876
No 446
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.05 E-value=0.03 Score=50.29 Aligned_cols=27 Identities=41% Similarity=0.484 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.-.+++|+|..|+|||||++.++.-..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999997543
No 447
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.04 E-value=0.061 Score=43.91 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=27.6
Q ss_pred HHHHHHHhcC------CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 161 LNNVLRALQD------PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 161 ~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
++++.+.|.. .....|+|+|.+|+|||||...+....
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 4555555542 245579999999999999999998654
No 448
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.04 E-value=0.024 Score=42.95 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-.|.|+|..|+|||||...+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999988665
No 449
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.04 E-value=0.031 Score=43.28 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|..|+|||||+..+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3567999999999999999988643
No 450
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.04 E-value=0.031 Score=49.40 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+++|+|..|+|||||++.+..-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 8999999999999999999987653
No 451
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.03 E-value=0.035 Score=45.96 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+.|+|+|.+|+|||||+..+....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578999999999999999988654
No 452
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.03 E-value=0.022 Score=47.86 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-.+++|+|..|+|||||++.+..-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4588999999999999999988654
No 453
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.02 E-value=0.071 Score=46.46 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHhcC-----------CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 156 SRSSTLNNVLRALQD-----------PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 156 gr~~~~~~l~~~L~~-----------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|.++-++.+.+.+.+ ++...++|+|.+|+|||||.+.+....
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 455556666655531 123578999999999999999998654
No 454
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.99 E-value=0.027 Score=51.22 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=29.7
Q ss_pred CCcChHHHHHHHHHHhcCCCce-----------EEEEEccCCCCHHHHHHHHHHHh
Q 036637 153 AFESRSSTLNNVLRALQDPDVN-----------MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 153 ~~~gr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++|.+..+..+.-.|.....+ -+-++|.+|+|||+||+.+.+..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4566666555544433333211 47899999999999999887543
No 455
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.97 E-value=0.045 Score=40.22 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
.++..|+|..|+|||||...++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999874
No 456
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.035 Score=43.33 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|.|+|.+|+|||||+..+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 457
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.94 E-value=0.025 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 036637 176 VGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 176 i~I~G~gGvGKTtLa~~v~~~~ 197 (250)
|+|+|..|+|||||++.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999998654
No 458
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.92 E-value=0.033 Score=50.03 Aligned_cols=25 Identities=44% Similarity=0.506 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.-.+++|+|..|+|||||++.+..-
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999864
No 459
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.92 E-value=0.099 Score=44.88 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=35.8
Q ss_pred HHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhcCC-CCCCeEEEEEcCCCC
Q 036637 162 NNVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFGRD-QFFDQVIFVEVPHIP 215 (250)
Q Consensus 162 ~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~-~~Fd~~~wv~vs~~~ 215 (250)
-++++.+.. ..-..++|+|..|+|||||++.+.+..... ..++| +++-+++.+
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 456676663 345588999999999999999987754321 22443 457777654
No 460
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.91 E-value=0.031 Score=44.34 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHhcC
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQFGR 199 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~~v 199 (250)
...|.|-|+.|+||||+++.+.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999987753
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.91 E-value=0.15 Score=39.52 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=32.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
.-|+|=|.-|+||||+++.+.+... ..++++. ..-+......+.++.++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~~-~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV--KDYDVIM-TREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT--TTSCEEE-EESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH--CCCCEEE-eeCCCCChHHHHHHHHHh
Confidence 3578889999999999999998875 3455332 222222334455555543
No 462
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.89 E-value=0.088 Score=47.32 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHh--cCCCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 157 RSSTLNNVLRAL--QDPDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 157 r~~~~~~l~~~L--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
+..-.+.+.+.. ..+...+|.+.|++|+||||+++.+.....
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 333344444444 234567899999999999999999987653
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.88 E-value=0.028 Score=50.45 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
-.+++|+|..|+|||||++.++.-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 464
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.86 E-value=0.041 Score=44.85 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999999864
No 465
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.86 E-value=0.037 Score=47.15 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=21.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
++..+|+|+|.+|+|||||.+.+.+..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 356779999999999999999987543
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.82 E-value=0.037 Score=42.95 Aligned_cols=26 Identities=31% Similarity=0.160 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-+.|.|+|..|+||||||..+...-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34678899999999999999987543
No 467
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.77 E-value=0.13 Score=43.18 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=33.4
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 036637 170 DPDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQ 221 (250)
Q Consensus 170 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~ 221 (250)
....+++.+.|-||+||||+|..+..-....+ ..++-|.....++....+
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~l~~~l 62 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHNLSDAF 62 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCChhHHh
Confidence 45578888999999999999999887765322 234445555444444433
No 468
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.75 E-value=0.022 Score=44.43 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCCHHHHHHH-HHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKE-VAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~-v~~~ 196 (250)
.--|.|+|.+|+|||||+.. +.+.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999 4444
No 469
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.75 E-value=0.047 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
...+|.+.|+.|+||||+++.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 470
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.72 E-value=0.12 Score=40.02 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=29.3
Q ss_pred EEEEE-ccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 036637 175 MVGIY-GMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKI 220 (250)
Q Consensus 175 vi~I~-G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l 220 (250)
+|+|+ +-||+||||++..+..-....+ .+.-|......+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHH
Confidence 67775 7789999999999887775432 4555666554444433
No 471
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.72 E-value=0.098 Score=43.78 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 157 RSSTLNNVLRALQDPD-VNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 157 r~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
.+...+.+...+..+. .+.+-++|..|+||||+|+.+.+...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 4556677777776554 56789999999999999999987754
No 472
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.70 E-value=0.15 Score=44.46 Aligned_cols=52 Identities=13% Similarity=-0.002 Sum_probs=37.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIAD 226 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~ 226 (250)
.-.++.|.|.+|+|||||+.++..+...... ..++|++... +..++...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCC--CHHHHHHHHHH
Confidence 3458899999999999999999877643211 2577776653 46677766643
No 473
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.70 E-value=0.039 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..|+++|.+|+|||||...+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999988653
No 474
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.70 E-value=0.015 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=4.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
--|.|+|..|+|||||+..+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46799999999999999988766
No 475
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.67 E-value=0.029 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
--|.|+|.+|+|||||...++.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3579999999999999998653
No 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.66 E-value=0.034 Score=49.90 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.-.+++|+|..|+|||||++.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999998864
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.63 E-value=0.039 Score=50.25 Aligned_cols=26 Identities=42% Similarity=0.512 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999754
No 478
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.60 E-value=0.047 Score=46.24 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+...++++|.+|+|||||...+....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999987643
No 479
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.59 E-value=0.15 Score=44.91 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=47.4
Q ss_pred HHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC-CHHHHHHHHHHH
Q 036637 163 NVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP-DIRKIQGEIADK 227 (250)
Q Consensus 163 ~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~-~~~~l~~~i~~~ 227 (250)
+.++.|.- ..-.-++|.|..|+|||+|+..+.++... .+-++++++-+++.. ...++++++...
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 35565552 23456799999999999999999887532 345889999999876 566777777654
No 480
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.59 E-value=0.041 Score=44.00 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.--|+++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567999999999999999987544
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.041 Score=50.13 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.+++|+|..|+|||||++.+..-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999998654
No 482
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.56 E-value=0.14 Score=44.94 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=47.3
Q ss_pred HHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCC-CHHHHHHHHHHH
Q 036637 163 NVLRALQD-PDVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIP-DIRKIQGEIADK 227 (250)
Q Consensus 163 ~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~-~~~~l~~~i~~~ 227 (250)
+.++.|.. ..-.-++|.|..|+|||+|+..+.+.... .+-+.++++-+++.. .+.++++++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 45666662 23456799999999999999999887532 345778889999876 556777777654
No 483
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.55 E-value=0.05 Score=46.35 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=22.8
Q ss_pred CCceEEEEEc-cCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYG-MGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G-~gGvGKTtLa~~v~~~~~ 198 (250)
...++|+|+| -||+||||+|-.+..-..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La 169 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA 169 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH
Confidence 4678999985 899999999988776553
No 484
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.47 E-value=0.043 Score=49.95 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45689999999999999999988643
No 485
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.45 E-value=0.028 Score=43.73 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=23.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.....|.|+|..|+|||||+..+.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 355678999999999999999998765
No 486
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.44 E-value=0.057 Score=42.63 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
....+|+|.|+.|+||||+++.+.....
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 3456999999999999999999988764
No 487
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.42 E-value=0.031 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
--|+|+|..|+|||||+..++.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHhC
Confidence 3469999999999999999865
No 488
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.42 E-value=0.19 Score=42.23 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=36.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADK 227 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~ 227 (250)
.-.++.|.|.+|+|||||+.++..+....+ ..++|++.- -+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCC--CCHHHHHHHHHHH
Confidence 345889999999999999999987765321 356676654 4566776666443
No 489
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.38 E-value=0.069 Score=41.76 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHH
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAI 195 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~ 195 (250)
.+...|+++|.-|+||||+++.+-.
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998754
No 490
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.37 E-value=0.017 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.+++|+|..|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 58899999999999999998643
No 491
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.33 E-value=0.032 Score=52.63 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=36.1
Q ss_pred cCCCcChHHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHHHhc
Q 036637 151 YEAFESRSSTLNNVLRALQD-------------PDVNMVGIYGMGGIGKTTLAKEVAIQFG 198 (250)
Q Consensus 151 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 198 (250)
...+.|.+..++.|.+.+.- .....+.++|.+|+||||||+.+.+...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 34567777777777766541 1345678999999999999999998875
No 492
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.32 E-value=0.051 Score=46.30 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 036637 175 MVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 175 vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.|+|+|.+|+|||||...+.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998764
No 493
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.32 E-value=0.12 Score=42.01 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHHHhcCC--CceEEEEEccCCCCHHHHHHHHHHH
Q 036637 161 LNNVLRALQDP--DVNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 161 ~~~l~~~L~~~--~~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
..-+..||... ...-|.++|++|.|||++|..+.+.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44566666643 2457999999999999999999986
No 494
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.31 E-value=0.046 Score=44.07 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHh
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
..|+++|.+|+|||||...+....
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999998644
No 495
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.30 E-value=0.29 Score=50.33 Aligned_cols=69 Identities=28% Similarity=0.275 Sum_probs=0.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQFGRDQFFDQVIFVEVPHIPDIRKIQGEIADKLGLIFF------EETESGRARSLYNR 247 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~~~v~~~Fd~~~wv~vs~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 247 (250)
+.+-|+|++|+||||||.++.......+. .++|+++.+.++... ++.+|.+.+ ..+..+....++..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~--~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTC--CEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Q ss_pred hc
Q 036637 248 LK 249 (250)
Q Consensus 248 L~ 249 (250)
.+
T Consensus 1501 vr 1502 (2050)
T 3cmu_A 1501 AR 1502 (2050)
T ss_dssp HH
T ss_pred Hh
No 496
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.30 E-value=0.1 Score=42.24 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 161 LNNVLRALQDPDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.++|++.+...- ..+.++|.+|+|||||...+....
T Consensus 88 i~~L~~~l~~~~-~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 88 KVLLKKLSFDRL-ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp HHHHHHHCCCTT-CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh-hheEEeCCCCCCHHHHHHHHhccc
Confidence 456666654322 568999999999999999988654
No 497
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.28 E-value=0.053 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHHH
Q 036637 173 VNMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 173 ~~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
...++|+|.+|+|||||.+.+...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999874
No 498
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.27 E-value=0.051 Score=49.25 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 171 PDVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 171 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
+.-.+++|+|..|+|||||++.+..-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345688999999999999999998654
No 499
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.25 E-value=0.064 Score=42.90 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH
Q 036637 174 NMVGIYGMGGIGKTTLAKEVAIQ 196 (250)
Q Consensus 174 ~vi~I~G~gGvGKTtLa~~v~~~ 196 (250)
.+|+|+|+.|+||||+++.+-..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988654
No 500
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.18 E-value=0.054 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHHHh
Q 036637 172 DVNMVGIYGMGGIGKTTLAKEVAIQF 197 (250)
Q Consensus 172 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 197 (250)
.-.+++|+|..|+|||||++.+..-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45689999999999999999998654
Done!