BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036642
(938 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 191/664 (28%), Positives = 278/664 (41%), Gaps = 80/664 (12%)
Query: 266 QLVFLDLRRNNFQGPIPE--GLQNLTSLKHLLLDSNR--FNSSIPNWLYRFNRLESLGVS 321
L LDL RN+ GP+ L + + LK L + SN F + L + N LE L +S
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 156
Query: 322 NNSLQGRVIRS--MASLCN-LRSVMLSCVKLSQEIS-------EIFDIFSGCVSSG---- 367
NS+ G + ++ C L+ + +S K+S ++ E D+ S S+G
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 368 -----LEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422
L+ L + G+ +SG + + L L++S+N VGPIP L +LQ++ L+
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 274
Query: 423 YNELNGMNDNWIPPF------QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS 476
N+ G IP F L L L H P + S L L LS + +G
Sbjct: 275 ENKFTG----EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 477 IPNIFWSSASQIYVLDLSFNQIHGQIP-NLTN-AAQLEVLSLGSNSFSGA-LPLISSN-- 531
+P + VLDLSFN+ G++P +LTN +A L L L SN+FSG LP + N
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 532 --LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL 589
L EL NN +G I + +L L+L N+L G + + L L L
Sbjct: 391 NTLQELYLQNNGFTGKIPPTL----SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 590 SNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTIHS-LKNCTALLTLDVGENEFVENIPTW 648
N G N+L+G I S L NCT L + + N IP W
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
IG R + +L L +N F +P L D L +DL N +G +P + + N
Sbjct: 507 IG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 709 SHAGKAIQY-------------------------QFLLYASRAPSTAMLLEDALVVMKGR 743
AGK Y Q ++R P V G
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI-----TSRVYGGH 620
Query: 744 AAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLE 803
+ + +D S N SG IP E+ ++ L NL +N +G IP+ +G +R L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 804 SIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDASSYAGN-DLCGA 862
+D S N+L G IPQ+M +G IP Q ++F + + N LCG
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 740
Query: 863 PLPR 866
PLPR
Sbjct: 741 PLPR 744
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 124/474 (26%), Positives = 193/474 (40%), Gaps = 89/474 (18%)
Query: 381 HLTYKLGQFK---NLYYLDLSNNSIVGPIPF--SLGHLSTLQFIDLSYNELNGMNDNWIP 435
H+ + FK +L LDLS NS+ GP+ SLG S L+F+++S N L+
Sbjct: 85 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 136
Query: 436 PFQLATLGLRHCHLGSRFPSWLHSQKHLN---YLDLSYSGITGS--IPNIFWSSASQIYV 490
FP + LN LDLS + I+G+ + + ++
Sbjct: 137 -----------------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 179
Query: 491 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS--SNLIELDFSNNSISGSIFH 548
L +S N+I G + +++ LE L + SN+FS +P + S L LD S N +SG
Sbjct: 180 LAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 238
Query: 549 FICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXX 608
I +L+ L + N G + + ++L L L+ NKFTG
Sbjct: 239 AI----STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI---------- 282
Query: 609 XXXXXRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS 668
+ LSG C L LD+ N F +P + G + + +N
Sbjct: 283 ------PDFLSGA------CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 669 LLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPS 728
L L + L+++DL+ N SGE+P + NL A + + L + P
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 729 TAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFF 788
N ++ + N F+GKIP ++N L S +LS N+
Sbjct: 391 -----------------------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 789 TGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPS 842
+G IP S+G++ L + LN L GEIPQ + TG+IPS
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 141/512 (27%), Positives = 203/512 (39%), Gaps = 133/512 (25%)
Query: 136 RFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDL 195
R I + L+ LN+S QFVG IPP L +LQYL L+ N E +P
Sbjct: 238 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE----IPDF------ 285
Query: 196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS 255
LS A D +L L LS + P + S L +L L N F
Sbjct: 286 ------LSGACD---------TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 256 FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT-------------------------- 289
+ + + L LDL N F G +PE L NL+
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 290 -SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVK 348
+L+ L L +N F IP L + L SL +S N L G + S+ SL LR + L
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 349 LSQEISE-------------IFDIFSGCVSSGLEI------LVLRGSSVSGHLTYKLGQF 389
L EI + F+ +G + SGL + L + ++G + +G+
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG------ 443
+NL L LSNNS G IP LG +L ++DL+ N NG IP G
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT----IPAAMFKQSGKIAANF 566
Query: 444 --------------LRHCH------------------LGSRFPSWLHSQKH--------- 462
+ CH L +R P + S+ +
Sbjct: 567 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 463 ----LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLG 517
+ +LD+SY+ ++G IP S +++L+L N I G IP+ + + L +L L
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 518 SNSFSGALPLISSN---LIELDFSNNSISGSI 546
SN G +P S L E+D SNN++SG I
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 175/406 (43%), Gaps = 37/406 (9%)
Query: 127 NDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLS-NLQYLDLSWNFLYVENLWW 185
N+F G + M L+ L+LS+ +F G +P L NLS +L LDLS N
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP---I 381
Query: 186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS---LVKLRLSRCQLHHLPPLAIANFSTL 242
LP L L + L ++ TL + LV L LS L P ++ + S L
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 243 TTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN 302
L L N + +P + + L L L N+ G IP GL N T+L + L +NR
Sbjct: 442 RDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 303 SSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSG 362
IP W+ R L L +SNNS G + + +L + L+ + I SG
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 363 CVS----SGLEILVLR--GSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL----GH 412
++ +G + ++ G H L +F+ + L+ S P + GH
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 413 LS-------TLQFIDLSYNELNGMNDNWIP------PFQLATLGLRHCHLGSRFPSWLHS 459
S ++ F+D+SYN L+G +IP P+ L L L H + P +
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSG----YIPKEIGSMPY-LFILNLGHNDISGSIPDEVGD 675
Query: 460 QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNL 505
+ LN LDLS + + G IP S+ + + +DLS N + G IP +
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 191/664 (28%), Positives = 278/664 (41%), Gaps = 80/664 (12%)
Query: 266 QLVFLDLRRNNFQGPIPE--GLQNLTSLKHLLLDSNR--FNSSIPNWLYRFNRLESLGVS 321
L LDL RN+ GP+ L + + LK L + SN F + L + N LE L +S
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 159
Query: 322 NNSLQGRVIRS--MASLCN-LRSVMLSCVKLSQEIS-------EIFDIFSGCVSSG---- 367
NS+ G + ++ C L+ + +S K+S ++ E D+ S S+G
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 368 -----LEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422
L+ L + G+ +SG + + L L++S+N VGPIP L +LQ++ L+
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277
Query: 423 YNELNGMNDNWIPPF------QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS 476
N+ G IP F L L L H P + S L L LS + +G
Sbjct: 278 ENKFTG----EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 477 IPNIFWSSASQIYVLDLSFNQIHGQIP-NLTN-AAQLEVLSLGSNSFSGA-LPLISSN-- 531
+P + VLDLSFN+ G++P +LTN +A L L L SN+FSG LP + N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 532 --LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL 589
L EL NN +G I + +L L+L N+L G + + L L L
Sbjct: 394 NTLQELYLQNNGFTGKIPPTL----SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 590 SNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTIHS-LKNCTALLTLDVGENEFVENIPTW 648
N G N+L+G I S L NCT L + + N IP W
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
IG R + +L L +N F +P L D L +DL N +G +P + + N
Sbjct: 510 IG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 709 SHAGKAIQY-------------------------QFLLYASRAPSTAMLLEDALVVMKGR 743
AGK Y Q ++R P V G
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI-----TSRVYGGH 623
Query: 744 AAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLE 803
+ + +D S N SG IP E+ ++ L NL +N +G IP+ +G +R L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 804 SIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDASSYAGN-DLCGA 862
+D S N+L G IPQ+M +G IP Q ++F + + N LCG
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743
Query: 863 PLPR 866
PLPR
Sbjct: 744 PLPR 747
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 124/474 (26%), Positives = 193/474 (40%), Gaps = 89/474 (18%)
Query: 381 HLTYKLGQFK---NLYYLDLSNNSIVGPIPF--SLGHLSTLQFIDLSYNELNGMNDNWIP 435
H+ + FK +L LDLS NS+ GP+ SLG S L+F+++S N L+
Sbjct: 88 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 139
Query: 436 PFQLATLGLRHCHLGSRFPSWLHSQKHLN---YLDLSYSGITGS--IPNIFWSSASQIYV 490
FP + LN LDLS + I+G+ + + ++
Sbjct: 140 -----------------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 491 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS--SNLIELDFSNNSISGSIFH 548
L +S N+I G + +++ LE L + SN+FS +P + S L LD S N +SG
Sbjct: 183 LAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241
Query: 549 FICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXX 608
I +L+ L + N G + + ++L L L+ NKFTG
Sbjct: 242 AI----STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI---------- 285
Query: 609 XXXXXRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS 668
+ LSG C L LD+ N F +P + G + + +N
Sbjct: 286 ------PDFLSGA------CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 669 LLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPS 728
L L + L+++DL+ N SGE+P + NL A + + L + P
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 729 TAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFF 788
N ++ + N F+GKIP ++N L S +LS N+
Sbjct: 394 -----------------------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 789 TGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPS 842
+G IP S+G++ L + LN L GEIPQ + TG+IPS
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 141/512 (27%), Positives = 203/512 (39%), Gaps = 133/512 (25%)
Query: 136 RFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDL 195
R I + L+ LN+S QFVG IPP L +LQYL L+ N E +P
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE----IPDF------ 288
Query: 196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS 255
LS A D +L L LS + P + S L +L L N F
Sbjct: 289 ------LSGACD---------TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 256 FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT-------------------------- 289
+ + + L LDL N F G +PE L NL+
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 290 -SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVK 348
+L+ L L +N F IP L + L SL +S N L G + S+ SL LR + L
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 349 LSQEISE-------------IFDIFSGCVSSGLEI------LVLRGSSVSGHLTYKLGQF 389
L EI + F+ +G + SGL + L + ++G + +G+
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG------ 443
+NL L LSNNS G IP LG +L ++DL+ N NG IP G
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT----IPAAMFKQSGKIAANF 569
Query: 444 --------------LRHCH------------------LGSRFPSWLHSQKH--------- 462
+ CH L +R P + S+ +
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 463 ----LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLG 517
+ +LD+SY+ ++G IP S +++L+L N I G IP+ + + L +L L
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 518 SNSFSGALPLISSN---LIELDFSNNSISGSI 546
SN G +P S L E+D SNN++SG I
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 175/406 (43%), Gaps = 37/406 (9%)
Query: 127 NDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLS-NLQYLDLSWNFLYVENLWW 185
N+F G + M L+ L+LS+ +F G +P L NLS +L LDLS N
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP---I 384
Query: 186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS---LVKLRLSRCQLHHLPPLAIANFSTL 242
LP L L + L ++ TL + LV L LS L P ++ + S L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 243 TTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN 302
L L N + +P + + L L L N+ G IP GL N T+L + L +NR
Sbjct: 445 RDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 303 SSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSG 362
IP W+ R L L +SNNS G + + +L + L+ + I SG
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 363 CVS----SGLEILVLR--GSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL----GH 412
++ +G + ++ G H L +F+ + L+ S P + GH
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 413 LS-------TLQFIDLSYNELNGMNDNWIP------PFQLATLGLRHCHLGSRFPSWLHS 459
S ++ F+D+SYN L+G +IP P+ L L L H + P +
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSG----YIPKEIGSMPY-LFILNLGHNDISGSIPDEVGD 678
Query: 460 QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNL 505
+ LN LDLS + + G IP S+ + + +DLS N + G IP +
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 30/253 (11%)
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
NN GPIP + LT L +L + + +IP++L + L +L S N+L G + S++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
SL NL + ++S I + + FS +S + + + ++G + NL +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTS----MTISRNRLTGKIPPTFANL-NLAF 201
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFP 454
+DLS N + G G Q I L+ N L F L +GL
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL---------AFDLGKVGL---------- 242
Query: 455 SWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 514
K+LN LDL + I G++P + ++ L++SFN + G+IP N + +V
Sbjct: 243 -----SKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 515 SLGSNSFSGALPL 527
+ +N PL
Sbjct: 297 AYANNKCLCGSPL 309
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 123/294 (41%), Gaps = 76/294 (25%)
Query: 405 PIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLN 464
PIP SL +L L F+ + G+N N + P A L H
Sbjct: 67 PIPSSLANLPYLNFL-----YIGGIN-NLVGPIPPAIAKLTQLH---------------- 104
Query: 465 YLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGA 524
YL ++++ ++G+IP+ F S + LD S+N + G +P
Sbjct: 105 YLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLP--------------------- 142
Query: 525 LPLISS--NLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ 582
P ISS NL+ + F N ISG+I Y + K + + N L G++ + N
Sbjct: 143 -PSISSLPNLVGITFDGNRISGAIPD--SYGSFS-KLFTSMTISRNRLTGKIPPTFANL- 197
Query: 583 NLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTIHSLKNCTALLTLDVGENEFV 642
NL +DLS N G+ KN + IH KN L D+G+
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGS---------DKN--TQKIHLAKNS---LAFDLGKVGLS 243
Query: 643 ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPR 696
+N + L LR+N+ + LP+GL L FL ++++ NNL GE+P+
Sbjct: 244 KN-----------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 131/332 (39%), Gaps = 86/332 (25%)
Query: 34 CLESERRALLRFKQDLQDPSNRLASWIGYEDCC--AWAGVVCDNVTG-------HIVELN 84
C +++ALL+ K+DL +P+ L+SW+ DCC W GV+CD T + LN
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 85 LRNPFTYCDLSQSKAN-P--RSMLVGKVNPXXXXXXXXXXXXXXXNDFQGVQIPRFICSM 141
L P+ + S AN P + +G +N + G IP I +
Sbjct: 62 LPKPYP---IPSSLANLPYLNFLYIGGIN-----------------NLVG-PIPPAIAKL 100
Query: 142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVN 201
L YL +++T G IP L + L LD S+N L P +S
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT---LPPSIS----------- 146
Query: 202 LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTL-TTLDLLYNQFDNSFVPNW 260
+LP+LV + ++ P + +FS L T++ + N+ P
Sbjct: 147 ------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-- 192
Query: 261 VFGLIQLVFLDLRRNNFQG--PIPEGLQNLTSLKHLLLDS-------------------- 298
F + L F+DL RN +G + G T HL +S
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252
Query: 299 -NRFNSSIPNWLYRFNRLESLGVSNNSLQGRV 329
NR ++P L + L SL VS N+L G +
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 26/220 (11%)
Query: 670 LPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPST 729
+P + L L + + N+SG +P + ++ +VTL+ + A+ S P+
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD-FSYNALSGTLPPSISSLPNL 151
Query: 730 AMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT 789
+ D + Y L + S+N +GKIP NL L +LS N
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 790 GRIP-----------------------ESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXX 826
G +G ++L +D N++ G +PQ +
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 827 XXXXXXXXXXTGKIPSSTQLQSFDASSYAGND-LCGAPLP 865
G+IP LQ FD S+YA N LCG+PLP
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 762 NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMX 821
NN G IP + L L +++ +G IP+ + +++L ++DFS N LSG +P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 822 XXXXXXXXXXXXXXXTGKIPSS 843
+G IP S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDS 168
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 137/317 (43%), Gaps = 37/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
L LV + ++ Q+ + PLA N + LT L L NQ + P + L L L+L
Sbjct: 84 LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
N L LTSL+ L SN+ P L LE L +S+N + I +A
Sbjct: 139 NTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 192
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
L NL S++ + ++I DI + + L+ L L G+ + T L NL
Sbjct: 193 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 243
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
LDL+NN I P S L+ L + L N+++ I P L L L L
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 296
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
P + + K+L YL L ++ I+ P SS +++ L S N++ + +L N
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKV-SDVSSLANLTN 350
Query: 511 LEVLSLGSNSFSGALPL 527
+ LS G N S PL
Sbjct: 351 INWLSAGHNQISDLTPL 367
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 150/600 (25%), Positives = 227/600 (37%), Gaps = 106/600 (17%)
Query: 196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS 255
D S++ L++ D L T+ L L+ QL LP +S LT+LD+ +N +
Sbjct: 20 DCSHLKLTQVPDDLPTNITV-----LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SK 73
Query: 256 FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRL 315
P L L L+L+ N + T+L L L SN N + L
Sbjct: 74 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 133
Query: 316 ESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG 375
+L +S+N L + + L NL+ ++LS K+ SE DIF+ LE+ +
Sbjct: 134 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 193
Query: 376 SSVSGHLTYKLGQFKNLYY--------------LDLSNNSIVGPIPFSLGHLST------ 415
S + +G+ L+ L+L+N SI + S LST
Sbjct: 194 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN-LSLSNSQLSTTSNTTF 252
Query: 416 -------LQFIDLSYNELNGMNDN---WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNY 465
L +DLSYN LN + ++ W+P QL L + ++ F LH ++ Y
Sbjct: 253 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLFNVRY 310
Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSF-------------NQIHGQIPNL-TNAAQL 511
L+L S SI S AS + D SF N I G N+ T L
Sbjct: 311 LNLKRSFTKQSI-----SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 365
Query: 512 EVLSLGSNSFSGALPLISSNLIE--------LDFSNNSISGSIFHFICYRAHELKKLQFL 563
+ LSL SNSF+ L + + L+ + N IS + H L+ L
Sbjct: 366 KYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH----LEVL 420
Query: 564 YLRGNFLQGELT-DCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTI 622
L N + ELT W +N+ + LS NK+ R+ L
Sbjct: 421 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 480
Query: 623 HS------LKNCT---------------------ALLTLDVGENEFVE-------NIPTW 648
S L+N T L LD+ N P +
Sbjct: 481 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 540
Query: 649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
+ S + +L L SN F + + DL L+I+DL NNL+ +N ++ +LN
Sbjct: 541 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 600
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 182/452 (40%), Gaps = 72/452 (15%)
Query: 196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS 255
D S++ L++ D L T+ L L+ QL LP +S LT+LD+ +N +
Sbjct: 10 DCSHLKLTQVPDDLPTNITV-----LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SK 63
Query: 256 FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRL 315
P L L L+L+ N + T+L L L SN N + L
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 316 ESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG 375
+L +S+N L + + L NL+ ++LS K+ SE DIF+ LE+ +
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 376 SSVSGHLTYKLGQFKNLYY--------------LDLSNNSIVGPIPFSLGHLST------ 415
S + +G+ L+ L+L+N SI + S LST
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN-LSLSNSQLSTTSNTTF 242
Query: 416 -------LQFIDLSYNELNGMNDN---WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNY 465
L +DLSYN LN + ++ W+P QL L + ++ F LH ++ Y
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSF-------------NQIHGQIPNL-TNAAQL 511
L+L S SI S AS + D SF N I G N+ T L
Sbjct: 301 LNLKRSFTKQSI-----SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355
Query: 512 EVLSLGSNSFSGALPLISSNLIE--------LDFSNNSISGSIFHFICYRAHELKKLQFL 563
+ LSL SNSF+ L + + L+ + N IS + H L+ L
Sbjct: 356 KYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH----LEVL 410
Query: 564 YLRGNFLQGELT-DCWMNYQNLMILDLSNNKF 594
L N + ELT W +N+ + LS NK+
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 182/452 (40%), Gaps = 72/452 (15%)
Query: 196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS 255
D S++ L++ D L T+ L L+ QL LP +S LT+LD+ +N +
Sbjct: 15 DCSHLKLTQVPDDLPTNITV-----LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SK 68
Query: 256 FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRL 315
P L L L+L+ N + T+L L L SN N + L
Sbjct: 69 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 128
Query: 316 ESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG 375
+L +S+N L + + L NL+ ++LS K+ SE DIF+ LE+ +
Sbjct: 129 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 188
Query: 376 SSVSGHLTYKLGQFKNLYY--------------LDLSNNSIVGPIPFSLGHLST------ 415
S + +G+ L+ L+L+N SI + S LST
Sbjct: 189 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN-LSLSNSQLSTTSNTTF 247
Query: 416 -------LQFIDLSYNELNGMNDN---WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNY 465
L +DLSYN LN + ++ W+P QL L + ++ F LH ++ Y
Sbjct: 248 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLFNVRY 305
Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSF-------------NQIHGQIPNL-TNAAQL 511
L+L S SI S AS + D SF N I G N+ T L
Sbjct: 306 LNLKRSFTKQSI-----SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 360
Query: 512 EVLSLGSNSFSGALPLISSNLIE--------LDFSNNSISGSIFHFICYRAHELKKLQFL 563
+ LSL SNSF+ L + + L+ + N IS + H L+ L
Sbjct: 361 KYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH----LEVL 415
Query: 564 YLRGNFLQGELT-DCWMNYQNLMILDLSNNKF 594
L N + ELT W +N+ + LS NK+
Sbjct: 416 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 447
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 135/317 (42%), Gaps = 37/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
L LV + ++ Q+ + PLA N + LT L L NQ + + + L L L+L
Sbjct: 84 LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
N L LTSL+ L SN+ P L LE L +S+N + I +A
Sbjct: 139 NTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 192
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
L NL S++ + ++I DI + + L+ L L G+ + T L NL
Sbjct: 193 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 243
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
LDL+NN I P S L+ L + L N+++ I P L L L L
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 296
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
P + + K+L YL L ++ I+ P SS +++ L +N + +L N
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL-FFYNNKVSDVSSLANLTN 350
Query: 511 LEVLSLGSNSFSGALPL 527
+ LS G N S PL
Sbjct: 351 INWLSAGHNQISDLTPL 367
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%)
Query: 127 NDFQGVQIPRFICSMGNLRYLNLSYT--QFVGMIPPQLGNLSNLQYLDLSWNFLYVENLW 184
N F V +P +L +L+LS F G ++L+YLDLS+N + +
Sbjct: 339 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 185 WLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTT 244
+L GL L+ LD + NL + S++ V +L +L+ L +S S+L
Sbjct: 392 FL-GLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS 304
L + N F +F+P+ L L FLDL + + P +L+SL+ L + SN+ S
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KS 508
Query: 305 IPNWLYRFNRLESL 318
+P+ + F+RL SL
Sbjct: 509 VPDGI--FDRLTSL 520
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 14/214 (6%)
Query: 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN--NFQ 278
L L C+ P L + + LT N+ N+F L L FLDL RN +F+
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 362
Query: 279 GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCN 338
G + TSLK+L L N + N+L +LE L +++L + + + +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL--KQMSEFSVFLS 419
Query: 339 LRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQFKNLYYLDL 397
LR+++ + + IF+G S LE+L + G+S + L + +NL +LDL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 398 SNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMND 431
S + P + LS+LQ ++++ N+L + D
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 149/391 (38%), Gaps = 93/391 (23%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
L SL KL L L I + TL L++ +N + +P + L L LDL
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 275 NNFQGPIPEGLQNLTSLKHL------------LLDSNRFNSSIPNWLYRFNRLESLGVSN 322
N Q L+ L + L + F + L N +SL V
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 323 NSLQG-------RVI---------------RSMASLCNLRSVMLSCVKLSQEISEIFDIF 360
+QG R++ ++ LCNL L + +I D+F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 361 SGCVS-----SGLEILVLRGSSVS-----GHLTY---KLGQFK----------------- 390
+ C++ S + + + R S HL K GQF
Sbjct: 279 N-CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 391 ----------NLYYLDLSNN--SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ 438
+L +LDLS N S G S ++L+++DLS+N + M+ N++ Q
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 439 LATLGLRHCHLG--SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFN 496
L L +H +L S F +L S ++L YLD+S++ + IF + S + VL ++ N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGN 455
Query: 497 --------QIHGQIPNLT----NAAQLEVLS 515
I ++ NLT + QLE LS
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 124/476 (26%), Positives = 189/476 (39%), Gaps = 106/476 (22%)
Query: 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQF 252
K+LDLS+ L + + P L L LSRC++ + A + S L+TL L N
Sbjct: 31 KNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 253 DN----------------------SFVPNWVFG-LIQLVFLDLRRNNFQG-PIPEGLQNL 288
+ + + N+ G L L L++ N Q +PE NL
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV--IRSMASLCNLRSVMLSC 346
T+L+HL L SN+ S L +++ L +S + + I+ A + + L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLHK 204
Query: 347 VKLSQEISEIFDIFSGCVS--SGLEI--LVL------------RGSSVSGHLTYKLGQFK 390
+ L + ++ C+ +GLE+ LVL S++ G + +F+
Sbjct: 205 LTLRNNFDSL-NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 391 NLYYLDLSNNSIVGPI-------PFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG 443
L YLD + I+ FSL ++ + D SYN F L
Sbjct: 264 -LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN------------FGWQHLE 310
Query: 444 LRHCHLGSRFPSW-LHSQKH-------------------LNYLDLSYSGIT--GSIPNIF 481
L +C G +FP+ L S K L +LDLS +G++ G
Sbjct: 311 LVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 482 WSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGS------NSFSGALPLISSNLIEL 535
+ + S Y LDLSFN + N QLE L + FS L L NLI L
Sbjct: 370 FGTTSLKY-LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL--RNLIYL 426
Query: 536 DFSNNSISGSIFHFICYRAHELKKLQFLYLRGN-FLQGELTDCWMNYQNLMILDLS 590
D S+ + F+ I + L L+ L + GN F + L D + +NL LDLS
Sbjct: 427 DISHTHTRVA-FNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 135/317 (42%), Gaps = 37/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
L LV + ++ Q+ + PLA N + LT L L NQ + + + L L L+L
Sbjct: 84 LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
N L LTSL+ L SN+ P L LE L +S+N + I +A
Sbjct: 139 NTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 192
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
L NL S++ + ++I DI + + L+ L L G+ + T L NL
Sbjct: 193 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 243
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
LDL+NN I P S L+ L + L N+++ I P L L L L
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 296
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
P + + K+L YL L ++ I+ P SS +++ L +N + +L N
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL-FFYNNKVSDVSSLANLTN 350
Query: 511 LEVLSLGSNSFSGALPL 527
+ LS G N S PL
Sbjct: 351 INWLSAGHNQISDLTPL 367
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 128 DFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP 187
D + VQ ++ + N+RYL L + + L L+NL YL L+ N L
Sbjct: 52 DIKSVQGIQY---LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD 106
Query: 188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDL 247
L+ LK+L L L D V + L +L L L+ QL LP + LT LDL
Sbjct: 107 KLTNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 248 LYNQFDNSFVPNWVFG-LIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSI 305
YNQ + +P VF L QL L L +N + +P+G+ LTSL+++ L N ++ +
Sbjct: 165 SYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC 221
Query: 306 PNWLY 310
P Y
Sbjct: 222 PGIRY 226
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 330 IRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQF 389
I ++ L NL ++L+ +L + +FD + L+ LVL + + +
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTN-----LKELVLVENQLQSLPDGVFDKL 132
Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGM 429
NL YL+L++N + L+ L +DLSYN+L +
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 137/319 (42%), Gaps = 42/319 (13%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
L LV + ++ Q+ + PLA N + LT L L NQ + + + L L L+L
Sbjct: 84 LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNW--LYRFNRLESLGVSNNSLQGRVIRS 332
N L LTSL+ L F + + + L LE L +S+N + I
Sbjct: 139 NTISDI--SALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189
Query: 333 MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNL 392
+A L NL S++ + ++I DI + + L+ L L G+ + T L NL
Sbjct: 190 LAKLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 240
Query: 393 YYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCH 448
LDL+NN I P S L+ L + L N+++ I P L L L
Sbjct: 241 TDLDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQ 293
Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 508
L P + + K+L YL L ++ I+ P SS +++ L S N++ + +L N
Sbjct: 294 LEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKV-SDVSSLANL 347
Query: 509 AQLEVLSLGSNSFSGALPL 527
+ LS G N S PL
Sbjct: 348 TNINWLSAGHNQISDLTPL 366
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 13/187 (6%)
Query: 142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF--LKDLDLSY 199
+ + L+L + + L+ L+ L L+ N L LP F LK+L+ +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-----LPAGIFKELKNLETLW 91
Query: 200 VNLSKASDW-LRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVP 258
V +K + V + L +L +LRL R QL LPP + + LT L L YN+ + +P
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LP 149
Query: 259 NWVFG-LIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLE 316
VF L L L L N + +PEG LT LK L LD+N+ +L+
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 317 SLGVSNN 323
L + N
Sbjct: 209 MLQLQEN 215
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 9/154 (5%)
Query: 213 NTLPS-----LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSF--VPNWVFG-L 264
++LPS L KLRL + L L F L L+ L+ DN +P VF L
Sbjct: 50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT-DNKLQALPIGVFDQL 108
Query: 265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNS 324
+ L L L RN + P +LT L +L L N S + L+ L + NN
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168
Query: 325 LQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFD 358
L+ + L L+++ L +L + FD
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 528 ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMIL 587
I ++ +LD +N +S H L KL+ LYL N LQ + +NL L
Sbjct: 35 IPADTKKLDLQSNKLSS----LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90
Query: 588 DLSNNKFTGNXXXXXXXXXXXXXXXXRKNNL-SGTIHSLKNCTALLTLDVGENEFVENIP 646
+++NK +N L S + T L L +G NE ++++P
Sbjct: 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLP 149
Query: 647 TWIGERFSRMVVLILRSNKFHSLLPKGLCD-LAFLQIVDLADNNLSGEVP 695
+ ++ + + L L +N+ +P+G D L L+ + L DNN VP
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKL-DNNQLKRVP 197
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 136/317 (42%), Gaps = 38/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
L LV + ++ Q+ + PLA N + LT L L NQ + + + L L L+L
Sbjct: 88 LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 142
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
N L LTSL+ L N+ P L LE L +S+N + I +A
Sbjct: 143 NTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 195
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
L NL S++ + ++I DI + + L+ L L G+ + T L NL
Sbjct: 196 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 246
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
LDL+NN I P S L+ L + L N+++ I P L L L L
Sbjct: 247 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 299
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
P + + K+L YL L ++ I+ P SS +++ L + N++ + +L N
Sbjct: 300 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVS-DVSSLANLTN 353
Query: 511 LEVLSLGSNSFSGALPL 527
+ LS G N S PL
Sbjct: 354 INWLSAGHNQISDLTPL 370
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 127 NDFQGVQIPRFICSMGNLRYLNLSYT--QFVGMIPPQLGNLSNLQYLDLSWNFLYVENLW 184
N F V +P +L +L+LS F G ++L+YLDLS+N + +
Sbjct: 339 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 185 WLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTT 244
+L GL L+ LD + NL + S++ V +L +L+ L +S S+L
Sbjct: 392 FL-GLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS 304
L + N F +F+P+ L L FLDL + + P +L+SL+ L + N F S
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FS 508
Query: 305 IPNWLYR-FNRLESLGVSNNSL 325
+ + Y+ N L+ L S N +
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHI 530
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 14/207 (6%)
Query: 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN--NFQ 278
L L C+ P L + + LT N+ N+F L L FLDL RN +F+
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 362
Query: 279 GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCN 338
G + TSLK+L L N + N+L +LE L +++L + + + +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL--KQMSEFSVFLS 419
Query: 339 LRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQFKNLYYLDL 397
LR+++ + + IF+G S LE+L + G+S + L + +NL +LDL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 398 SNNSIVGPIPFSLGHLSTLQFIDLSYN 424
S + P + LS+LQ +++S+N
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 128/479 (26%), Positives = 189/479 (39%), Gaps = 112/479 (23%)
Query: 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ-----------LHHLPPL------- 234
K+LDLS+ L + + P L L LSRC+ L HL L
Sbjct: 31 KNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 235 ---AIANFSTLTTLDLLYNQFDN-SFVPNWVFG-LIQLVFLDLRRNNFQG-PIPEGLQNL 288
A+ FS L++L L N + + N+ G L L L++ N Q +PE NL
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV--IRSMASLCNLRSVMLSC 346
T+L+HL L SN+ S L +++ L +S + + I+ A + + L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLHK 204
Query: 347 VKLSQEISEIFDIFSGCVS--SGLEI--LVL------------RGSSVSGHLTYKLGQFK 390
+ L + ++ C+ +GLE+ LVL S++ G + +F+
Sbjct: 205 LTLRNNFDSL-NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 391 NLYYLDLSNNSIVGPI-------PFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG 443
L YLD + I+ FSL ++ + D SYN F L
Sbjct: 264 -LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN------------FGWQHLE 310
Query: 444 LRHCHLGSRFPSW-LHSQKH-------------------LNYLDLSYSGIT--GSIPNIF 481
L +C G +FP+ L S K L +LDLS +G++ G
Sbjct: 311 LVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 482 WSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGS------NSFSGALPLISSNLIEL 535
+ + S Y LDLSFN + N QLE L + FS L L NLI L
Sbjct: 370 FGTTSLKY-LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL--RNLIYL 426
Query: 536 DFSNNSIS---GSIFHFICYRAHELKKLQFLYLRGN-FLQGELTDCWMNYQNLMILDLS 590
D S+ IF + L L+ L + GN F + L D + +NL LDLS
Sbjct: 427 DISHTHTRVAFNGIF-------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 55/208 (26%)
Query: 392 LYYLDLSNN--SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHL 449
L +LDLS N S G S ++L+++DLS+N + M+ N++ QL L +H +L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 450 G--SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTN 507
S F +L S ++L YLD+S++ + IF +S
Sbjct: 409 KQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSS--------------------- 446
Query: 508 AAQLEVLSLGSNSF-SGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLR 566
LEVL + NSF LP I + EL+ L FL L
Sbjct: 447 ---LEVLKMAGNSFQENFLPDIFT-------------------------ELRNLTFLDLS 478
Query: 567 GNFLQGELTDCWMNYQNLMILDLSNNKF 594
L+ + + +L +L++S+N F
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 135/319 (42%), Gaps = 42/319 (13%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
L LV + ++ Q+ + PLA N + LT L L NQ + + + L L L+L
Sbjct: 84 LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNW--LYRFNRLESLGVSNNSLQGRVIRS 332
N L LTSL+ L F + + + L LE L +S+N + I
Sbjct: 139 NTISDI--SALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189
Query: 333 MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNL 392
+A L NL S++ + ++I DI + + L+ L L G+ + T L NL
Sbjct: 190 LAKLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 240
Query: 393 YYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCH 448
LDL+NN I P S L+ L + L N+++ I P L L L
Sbjct: 241 TDLDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQ 293
Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 508
L P + + K+L YL L ++ I+ P SS +++ L +N + +L N
Sbjct: 294 LEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL-FFYNNKVSDVSSLANL 347
Query: 509 AQLEVLSLGSNSFSGALPL 527
+ LS G N S PL
Sbjct: 348 TNINWLSAGHNQISDLTPL 366
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 166 SNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR 225
++L+YLDLS+N + + +L GL L+ LD + NL + S++ V +L +L+ L +S
Sbjct: 78 TSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISH 135
Query: 226 CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGL 285
S+L L + N F +F+P+ L L FLDL + + P
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 286 QNLTSLKHLLLDSNRFNSSIPNWLYR-FNRLESLGVSNNSL 325
+L+SL+ L + N F S+ + Y+ N L+ L S N +
Sbjct: 196 NSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 11/204 (5%)
Query: 225 RCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLRRN--NFQGPI 281
RC L + S+ T L+L N+ + +P+ VF L QL L L N +F+G
Sbjct: 13 RCNSKGLTSVPTGIPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFKGCC 70
Query: 282 PEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
+ TSLK+L L N + N+L +LE L +++L + + + +LR+
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL--KQMSEFSVFLSLRN 127
Query: 342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQFKNLYYLDLSNN 400
++ + + IF+G S LE+L + G+S + L + +NL +LDLS
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 401 SIVGPIPFSLGHLSTLQFIDLSYN 424
+ P + LS+LQ +++S+N
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 134/317 (42%), Gaps = 38/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
L LV + ++ Q+ + PLA N + LT L L NQ + + + L L L+L
Sbjct: 89 LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 143
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
N L LTSL+ L N+ P L LE L +S+N + I +A
Sbjct: 144 NTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 196
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
L NL S++ + ++I DI + + L+ L L G+ + T L NL
Sbjct: 197 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 247
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
LDL+NN I P S L+ L + L N+++ I P L L L L
Sbjct: 248 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 300
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
P + + K+L YL L ++ I+ P SS +++ L +N + +L N
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL-FFYNNKVSDVSSLANLTN 354
Query: 511 LEVLSLGSNSFSGALPL 527
+ LS G N S PL
Sbjct: 355 INWLSAGHNQISDLTPL 371
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 13/202 (6%)
Query: 127 NDFQGVQIPRFICSMGNLRYLNLSYT--QFVGMIPPQLGNLSNLQYLDLSWNFLYVENLW 184
N F V +P +L +L+LS F G +L+YLDLS+N + +
Sbjct: 363 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415
Query: 185 WLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTT 244
+L GL L+ LD + NL + S++ V +L +L+ L +S S+L
Sbjct: 416 FL-GLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473
Query: 245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS 304
L + N F +F+P+ L L FLDL + + P +L+SL+ L + N F S
Sbjct: 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FS 532
Query: 305 IPNWLYR-FNRLESLGVSNNSL 325
+ + Y+ N L+ L S N +
Sbjct: 533 LDTFPYKCLNSLQVLDYSLNHI 554
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 14/207 (6%)
Query: 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN--NFQ 278
L L C+ P L + + LT N+ N+F L L FLDL RN +F+
Sbjct: 333 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 386
Query: 279 GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCN 338
G + SLK+L L N + N+L +LE L +++L + + + +
Sbjct: 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL--KQMSEFSVFLS 443
Query: 339 LRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQFKNLYYLDL 397
LR+++ + + IF+G S LE+L + G+S + L + +NL +LDL
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 398 SNNSIVGPIPFSLGHLSTLQFIDLSYN 424
S + P + LS+LQ +++S+N
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 128/479 (26%), Positives = 189/479 (39%), Gaps = 112/479 (23%)
Query: 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ-----------LHHLPPL------- 234
K+LDLS+ L + + P L L LSRC+ L HL L
Sbjct: 55 KNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112
Query: 235 ---AIANFSTLTTLDLLYNQFDN-SFVPNWVFG-LIQLVFLDLRRNNFQG-PIPEGLQNL 288
A+ FS L++L L N + + N+ G L L L++ N Q +PE NL
Sbjct: 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172
Query: 289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV--IRSMASLCNLRSVMLSC 346
T+L+HL L SN+ S L +++ L +S + + I+ A + + L
Sbjct: 173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLHK 228
Query: 347 VKLSQEISEIFDIFSGCVS--SGLEI--LVL------------RGSSVSGHLTYKLGQFK 390
+ L + ++ C+ +GLE+ LVL S++ G + +F+
Sbjct: 229 LTLRNNFDSL-NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287
Query: 391 NLYYLDLSNNSIVGPI-------PFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG 443
L YLD + I+ FSL ++ + D SYN F L
Sbjct: 288 -LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYN------------FGWQHLE 334
Query: 444 LRHCHLGSRFPSW-LHSQKH-------------------LNYLDLSYSGIT--GSIPNIF 481
L +C G +FP+ L S K L +LDLS +G++ G
Sbjct: 335 LVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 393
Query: 482 WSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGS------NSFSGALPLISSNLIEL 535
+ + S Y LDLSFN + N QLE L + FS L L NLI L
Sbjct: 394 FGTISLKY-LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL--RNLIYL 450
Query: 536 DFSNNSIS---GSIFHFICYRAHELKKLQFLYLRGN-FLQGELTDCWMNYQNLMILDLS 590
D S+ IF + L L+ L + GN F + L D + +NL LDLS
Sbjct: 451 DISHTHTRVAFNGIF-------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 55/209 (26%)
Query: 391 NLYYLDLSNN--SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
+L +LDLS N S G S +L+++DLS+N + M+ N++ QL L +H +
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 431
Query: 449 LG--SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLT 506
L S F +L S ++L YLD+S++ + IF +S
Sbjct: 432 LKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSS-------------------- 470
Query: 507 NAAQLEVLSLGSNSF-SGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYL 565
LEVL + NSF LP I + EL+ L FL L
Sbjct: 471 ----LEVLKMAGNSFQENFLPDIFT-------------------------ELRNLTFLDL 501
Query: 566 RGNFLQGELTDCWMNYQNLMILDLSNNKF 594
L+ + + +L +L++S+N F
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Query: 130 QGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGL 189
QG+Q + N+RYL L + + L L+NL YL L+ N L L
Sbjct: 57 QGIQY------LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 190 SFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLY 249
+ LK+L L L D V + L +L L L QL LP + LT LDL
Sbjct: 109 TNLKELVLVENQLQSLPDG--VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 250 NQFDNSFVPNWVFG-LIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPN 307
NQ + +P VF L QL L L N + +P+G+ LTSL H+ L +N ++ + +
Sbjct: 167 NQLQS--LPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCACSD 223
Query: 308 WLY 310
LY
Sbjct: 224 ILY 226
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLR 273
LP++ L L +LH + A+ + LT L L NQ + +PN VF L L L L
Sbjct: 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQS--LPNGVFDKLTNLKELVLV 117
Query: 274 RNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRS 332
N Q +P+G+ LT+L +L L N+ S + L L + NN LQ
Sbjct: 118 ENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGV 176
Query: 333 MASLCNLRSVMLSCVKLSQEISEIFD 358
L L+ + L+ +L +FD
Sbjct: 177 FDKLTQLKQLSLNDNQLKSVPDGVFD 202
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN+L + L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
NL +++L
Sbjct: 172 ENLDTLLLQ 180
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN+L + L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 337 CNLRSVML 344
NL +++L
Sbjct: 172 ENLDTLLL 179
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN+L + L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
NL +++L
Sbjct: 172 ENLDTLLLQ 180
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN L + L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
NL +++L
Sbjct: 172 ENLDTLLLQ 180
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN L + L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
NL +++L
Sbjct: 172 ENLDTLLLQ 180
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 144 LRYLNLSYTQFVGMIPPQLGN-LSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
L L+LS+ Q + P LG L L LD+S+N L L L GL L++L L L
Sbjct: 79 LGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
L +T T P L KL L+ QL LP + L TL L N +P F
Sbjct: 137 KTLPPGL-LTPT-PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFF 192
Query: 263 G--LIQLVFL 270
G L+ FL
Sbjct: 193 GSHLLPFAFL 202
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN L + L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
NL +++L
Sbjct: 172 ENLDTLLLQ 180
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 144 LRYLNLSYTQFVGMIPPQLGN-LSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
L L+LS+ Q + P LG L L LD+S+N L L L GL L++L L L
Sbjct: 79 LGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
L +T T P L KL L+ QL LP + L TL L N +P F
Sbjct: 137 KTLPPGL-LTPT-PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFF 192
Query: 263 G--LIQLVFL 270
G L+ FL
Sbjct: 193 GSHLLPFAFL 202
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 211 VTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG-LIQLVF 269
V ++L +L +L L QL LP + + LT LDL NQ + +P+ VF L+ L
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKE 116
Query: 270 LDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESL 318
L + N +P G++ LT L HL LD N+ SIP+ F+RL SL
Sbjct: 117 LFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHG--AFDRLSSL 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN+L + L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 337 CNLRSVML 344
NL +++L
Sbjct: 172 ENLDTLLL 179
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN L + L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
NL +++L
Sbjct: 172 ENLDTLLLQ 180
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 144 LRYLNLSYTQFVGMIPPQLG-NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
L L+LS+ Q + P LG L L LD+S+N L L L GL L++L L L
Sbjct: 79 LGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
L +T T P L KL L+ QL LP + L TL L N +P F
Sbjct: 137 KTLPPGL-LTPT-PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFF 192
Query: 263 G--LIQLVFL 270
G L+ FL
Sbjct: 193 GSHLLPFAFL 202
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 26 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 79
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 80 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 115
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN+L + L
Sbjct: 116 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 172
Query: 337 CNLRSVML 344
NL +++L
Sbjct: 173 ENLDTLLL 180
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
+PP L + + L LS N LY +L L + L L+L L+K L+V TLP
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
L L LS QL LP L LT LD+ +N+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
+P G L+ L L+ L L N + P L +LE L ++NN L + L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
NL +++L
Sbjct: 172 ENLDTLLLQ 180
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 144 LRYLNLSYTQFVGMIPPQLG-NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
L L+LS+ Q + P LG L L LD+S+N L L L GL L++L L L
Sbjct: 79 LGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
L +T T P L KL L+ QL LP + L TL L N +P F
Sbjct: 137 KTLPPGL-LTPT-PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFF 192
Query: 263 G--LIQLVFL 270
G L+ FL
Sbjct: 193 GSHLLPFAFL 202
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 119/501 (23%), Positives = 190/501 (37%), Gaps = 61/501 (12%)
Query: 142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVN 201
N+ LNL++ Q + P S L LD +N + L LK L+L +
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 202 LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV 261
LS+ SD V T +L +L L +H + N L LDL +N ++ + V
Sbjct: 85 LSQISDQTFVFCT--NLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGV 142
Query: 262 FGLIQLVFLDLRRNNFQGPIPEGLQNL--TSLKHLLLDSNRFNSSIPNWLYRFNRLESLG 319
L L +N E L+ L +SL+ L L SN P +L +L
Sbjct: 143 QLENLQE-LLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL 201
Query: 320 VSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVS 379
++N L + + + S+ + +Q ++ FSG + L L L +++
Sbjct: 202 LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH 261
Query: 380 GHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFID------------------- 420
+L YL L N+I P S LS L+++
Sbjct: 262 DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNID 321
Query: 421 ------LSYNELNGMNDNWIPPFQLAT----LGLRHCHLGSRFPSWLHSQKHLNYLDLSY 470
L Y E M+DN IP + T + L++ L F S L + + ++ L++
Sbjct: 322 DFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTS-LQTLTNETFVSLAH 380
Query: 471 SGI---------TGSIPNIFWSSASQIYVLDLSFNQIHGQIP-----NLTNAAQL----- 511
S + I N +S Q+ +LDL N+I ++ L N ++
Sbjct: 381 SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Query: 512 EVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ 571
+ L L ++SF+ L L + N IS S F L+ L L L N +
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPF-------RPLRNLTILDLSNNNIA 493
Query: 572 GELTDCWMNYQNLMILDLSNN 592
D +NL ILD +N
Sbjct: 494 NINEDLLEGLENLEILDFQHN 514
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 152/388 (39%), Gaps = 71/388 (18%)
Query: 141 MGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE-NLWWLPGL---SFLKDLD 196
+ +LRYL+L Y + P LSNL+YL L F +L P + SF
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKY 330
Query: 197 LSYVNLSKASDWLRVTNTLPSLVKLR---LSRCQLHHLPPLAIANF-----STLTTLDLL 248
L Y+N+ + +NT LV L+ LS+ L L F S L TL+L
Sbjct: 331 LEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT-FTSLQTLTNETFVSLAHSPLLTLNLT 389
Query: 249 YNQFDNSFVPNWVFG-LIQLVFLDLRRNNFQGPIP----EGLQNLTSLKHLLLDSNRFNS 303
N S + N F L QL LDL N + + GL+N+ +
Sbjct: 390 KNHI--SKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEI------------ 435
Query: 304 SIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGC 363
+N+ L S+ +L + R M LR V L V +S
Sbjct: 436 -----YLSYNKYLQLSTSSFALVPSLQRLM-----LRRVALKNVDISPSPFRPL------ 479
Query: 364 VSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIV---------GPIPFSLGHLS 414
L IL L ++++ L +NL LD +N++ GP+ F G LS
Sbjct: 480 --RNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKG-LS 536
Query: 415 TLQFIDLSYNELNGMNDNWIPP------FQLATLGLRHCHLGSRFPSWLHSQKHLNYLDL 468
L ++L E NG+++ IP F+L ++ L +L P Q L L+L
Sbjct: 537 HLHILNL---ESNGLDE--IPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNL 591
Query: 469 SYSGITGSIPNIFWSSASQIYVLDLSFN 496
+ IT ++F + LD+ FN
Sbjct: 592 QKNLITSVEKDVFGPPFQNLNSLDMRFN 619
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 19/202 (9%)
Query: 142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENL--WWLPGLSFLKDLDLSY 199
GN++ L+L VG L L NLQ LDLS N + + L LS L+ L+LS+
Sbjct: 331 GNVKKLHLG----VGC----LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSH 382
Query: 200 VN-LSKASDWLRVTNTLPSLVKLRLSRCQLH-HLPPLAIANFSTLTTLDLLYNQFDNSFV 257
L S + P L L L+ +LH + P N L L+L Y D S
Sbjct: 383 NEPLGLQSQAFK---ECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTS-N 438
Query: 258 PNWVFGLIQLVFLDLRRNNFQ-GPIPEG--LQNLTSLKHLLLDSNRFNSSIPNWLYRFNR 314
+ + GL L L+L+ N+FQ G I + LQ + SL+ L+L S S + +
Sbjct: 439 QHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGK 498
Query: 315 LESLGVSNNSLQGRVIRSMASL 336
+ + +S+NSL I S++ L
Sbjct: 499 MSHVDLSHNSLTCDSIDSLSHL 520
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 174/437 (39%), Gaps = 83/437 (18%)
Query: 415 TLQFIDLSYNELNGM-NDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGI 473
T +F++ S+N L + N + L L L C + +W+H ++ LS +
Sbjct: 31 TTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQI-----NWIHEDTFQSHHQLSTLVL 85
Query: 474 TGSIPNIFWSSAS-------------QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 520
TG+ P IF + S Q + +L F +H N LE L LGSN
Sbjct: 86 TGN-PLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVH-------NLENLESLYLGSNH 137
Query: 521 FSG-ALP--LISSNLIELDFSNNSISGSIFHFICYRAHELKKL-QFLYLRGNFLQGELTD 576
S P + NL LDF NN+I H+I +++ L Q + L NF +
Sbjct: 138 ISSIKFPKDFPARNLKVLDFQNNAI-----HYISRE--DMRSLEQAINLSLNFNGNNVKG 190
Query: 577 CWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTIHSLKNCTAL-LTLD 635
+ + I N F G NLS + L+N T L L
Sbjct: 191 IELGAFDSTIFQSLN--FGGTP------------------NLSVIFNGLQNSTTQSLWLG 230
Query: 636 VGENEFVENIPTWIGERFSRMVV--LILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGE 693
E+ E+I + + + M V L L+ ++F + LQ +DL +L G
Sbjct: 231 TFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG- 289
Query: 694 VP---RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYK-- 748
+P + ++ L+ +V +H + Q + A+ PS L ++G +
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQ----ISAANFPSLTHL------YIRGNVKKLHLG 339
Query: 749 --CILNL--VRIIDFSKNNFSGK--IPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSL 802
C+ L ++ +D S N+ L++ NL LQ+ NLS+N G ++ L
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL 399
Query: 803 ESIDFSLNQLSGEIPQS 819
E +D + +L PQS
Sbjct: 400 ELLDLAFTRLHINAPQS 416
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 101/243 (41%), Gaps = 46/243 (18%)
Query: 141 MGNLRYLNLSYTQFVGMIP------PQL-------------------GNLSNLQYLDLSW 175
+ +L+ LNLS+ + +G+ PQL NL LQ L+L++
Sbjct: 372 LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Query: 176 NFLYVENLWWLPGLSFLKDLDLSYVNLSKAS-DWLRVTNTLPSLVKLRLSRCQLHHLPPL 234
FL N L GL L+ L+L + + + T+ SL L LS C L +
Sbjct: 432 CFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQ 491
Query: 235 AIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL--VFLDLRRNNFQGPIPEGL-----QN 287
A + ++ +DL + NS + + L L ++L+L N+ P L Q+
Sbjct: 492 AFHSLGKMSHVDLSH----NSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQS 547
Query: 288 LTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV 347
+L H LD N W Y+ N + L+G + A+ +LR V LS V
Sbjct: 548 TINLSHNPLDCTCSNIHFLTW-YKENL--------HKLEGSEETTCANPPSLRGVKLSDV 598
Query: 348 KLS 350
KLS
Sbjct: 599 KLS 601
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 209 LRVTNTLPS-LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL 267
+ + LPS LV+LR+ ++ +P + + +++ N +NS F ++L
Sbjct: 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174
Query: 268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG 327
+L + G IP+ L +L L LD N+ + L R+++L LG+ +N ++
Sbjct: 175 NYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 328 RVIRSMASLCNLRSVMLSCVKLSQEISEIFDI 359
S++ L LR + L KLS+ + + D+
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 146/336 (43%), Gaps = 48/336 (14%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLY---VENLWWL---PGLSFLKDLDLSYVNLSKASDWLRV 211
+P NL+NL ++DLS+N++ V +L +L P ++ D+ L+ ++ + + +
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204
Query: 212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD 271
+LH L NF++ + V + G F D
Sbjct: 205 ---------------KLHELT--LRGNFNSSNIMKTCLQNLAGLHVHRLILG----EFKD 243
Query: 272 LRR-NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVI 330
R F+ I EGL ++T + L +N F+ I +F+ L VS SL G I
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI----VKFHCLA--NVSAMSLAGVSI 297
Query: 331 RSMASL-CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQF 389
+ + + + + LS ++ + D+ L+ L L + G +++K
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLKQFPTLDL------PFLKSLTLTMN--KGSISFKKVAL 349
Query: 390 KNLYYLDLSNN--SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHC 447
+L YLDLS N S G +S ++L+ +DLS+N M+ N++ +L L +H
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409
Query: 448 HLG--SRFPSWLHSQKHLNYLDLSYSGITGSIPNIF 481
L + F ++L +K L YLD+SY+ IF
Sbjct: 410 TLKRVTEFSAFLSLEKLL-YLDISYTNTKIDFDGIF 444
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Query: 145 RYLNLSYTQFVGMIPPQLGNLSNLQYLDLS-WNFLYVENLWWLPGLSFLKDLDLSYVNLS 203
+ ++LS+ + N S LQ+LDLS +E+ W GL L +L L+ +
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTGNPIQ 93
Query: 204 KASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG 263
S + L SL L +L L I TL L++ +N + +P +
Sbjct: 94 SFSPG--SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 264 LIQLVFLDLRRNNFQGPIPEGLQ 286
L LV +DL N Q LQ
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQ 174
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 103/423 (24%), Positives = 168/423 (39%), Gaps = 80/423 (18%)
Query: 166 SNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNT----LPSLVKL 221
+++ Y+DLS N ++ L SF + DL ++ + + + L + N L SL+ L
Sbjct: 30 AHVNYVDLSLN-----SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 222 RLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVP-NWVFGLIQLVFLDLRRNNFQGP 280
+L Q L A + L L L D + + N+ L L L LR NN +
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
Query: 281 IPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFN-------RLESLGVSNNS---LQGRV 329
P N+ L L N+ S L F RL S+ + + + L
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 330 IRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGS----SVSGH---- 381
+ ++ ++ LS + +++ F F + ++ L+L S S GH
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRF--FDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262
Query: 382 ----LTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF 437
T+K + + DLS + I + H + L+ + L+ NE+N ++DN
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN----- 317
Query: 438 QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ 497
A GL HL L+LS + + GSI + + + ++ VLDLS+N
Sbjct: 318 --AFWGL----------------THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNH 358
Query: 498 IHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHEL 557
I +LG SF G LP NL EL N + S+ I R L
Sbjct: 359 IR---------------ALGDQSFLG-LP----NLKELALDTNQLK-SVPDGIFDRLTSL 397
Query: 558 KKL 560
+K+
Sbjct: 398 QKI 400
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 146/336 (43%), Gaps = 48/336 (14%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLY---VENLWWL---PGLSFLKDLDLSYVNLSKASDWLRV 211
+P NL+NL ++DLS+N++ V +L +L P ++ D+ L+ ++ + + +
Sbjct: 140 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 199
Query: 212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD 271
+LH L NF++ + V + G F D
Sbjct: 200 ---------------KLHELT--LRGNFNSSNIMKTCLQNLAGLHVHRLILG----EFKD 238
Query: 272 LRR-NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVI 330
R F+ I EGL ++T + L +N F+ I +F+ L VS SL G I
Sbjct: 239 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI----VKFHCLA--NVSAMSLAGVSI 292
Query: 331 RSMASL-CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQF 389
+ + + + + LS ++ + D+ L+ L L + G +++K
Sbjct: 293 KYLEDVPKHFKWQSLSIIRCQLKQFPTLDL------PFLKSLTLTMN--KGSISFKKVAL 344
Query: 390 KNLYYLDLSNN--SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHC 447
+L YLDLS N S G +S ++L+ +DLS+N M+ N++ +L L +H
Sbjct: 345 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 404
Query: 448 HLG--SRFPSWLHSQKHLNYLDLSYSGITGSIPNIF 481
L + F ++L +K L YLD+SY+ IF
Sbjct: 405 TLKRVTEFSAFLSLEKLL-YLDISYTNTKIDFDGIF 439
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Query: 145 RYLNLSYTQFVGMIPPQLGNLSNLQYLDLS-WNFLYVENLWWLPGLSFLKDLDLSYVNLS 203
+ ++LS+ + N S LQ+LDLS +E+ W GL L +L L+ +
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTGNPIQ 88
Query: 204 KASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG 263
S + L SL L +L L I TL L++ +N + +P +
Sbjct: 89 SFSPG--SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 264 LIQLVFLDLRRNNFQGPIPEGLQ 286
L LV +DL N Q LQ
Sbjct: 147 LTNLVHVDLSYNYIQTITVNDLQ 169
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 118/276 (42%), Gaps = 54/276 (19%)
Query: 217 SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRN 275
++ KL + + +LPP N LT L L N D S +P +F +L L + N
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN--DLSSLPRGIFHNTPKLTTLSMSNN 157
Query: 276 NFQGPIPEGLQNLTSLKHLLLDSNRFN----SSIPNWLY---RFNRL---------ESLG 319
N + + Q TSL++L L SNR S IP+ + +N L E L
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217
Query: 320 VSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDI-----FSGCVSSGLEILVLR 374
S+NS+ V+R +V L+ +KL + + D + G V L L
Sbjct: 218 ASHNSIN--VVRGPV------NVELTILKLQH--NNLTDTAWLLNYPGLVEVDLSYNEL- 266
Query: 375 GSSVSGHLTYKLGQFKNLYYLDLSNNSIVG------PIPFSLGHLSTLQFIDLSYNELNG 428
+ H K+ + + LY +SNN +V PIP TL+ +DLS+N L
Sbjct: 267 -EKIMYHPFVKMQRLERLY---ISNNRLVALNLYGQPIP-------TLKVLDLSHNHLLH 315
Query: 429 MNDNWIPPF-QLATLGLRHCHLGSRFPSWLHSQKHL 463
+ N P F +L L L H + + S H+ K+L
Sbjct: 316 VERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 26/262 (9%)
Query: 358 DIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQ 417
+ F+G S + L L V + K+L L+L+ N I + L LQ
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 418 FIDLSYN---ELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGIT 474
++LSYN EL N +P ++A + L+ H+ + L LDL + +T
Sbjct: 318 VLNLSYNLLGELYSSNFYGLP--KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 475 G-----SIPNIFWSSASQIYV--LDLSFNQIHGQIPNLTN---------AAQLEVLSLGS 518
SIP+IF S + + ++L+ N IH L N L++L L
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435
Query: 519 NSFSGA----LPLISSNLIELDFSNNSISGSIFHFICYRAHE-LKKLQFLYLRGNFLQGE 573
N FS P + +L +L N + + +C+ E L LQ LYL N+L
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 574 LTDCWMNYQNLMILDLSNNKFT 595
+ + L L L++N+ T
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLT 517
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 25/138 (18%)
Query: 136 RFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF---LYVENLWWLPGLSFL 192
R ++ +L+ LNL+Y + + L NLQ L+LS+N LY N + LP ++++
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 193 KDLDLSYV---------------NLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI- 236
DL +++ L + L + +PS+ + LS +L LP + +
Sbjct: 344 -DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402
Query: 237 ANF-----STLTTLDLLY 249
AN + L LD+LY
Sbjct: 403 ANLIHLSENRLENLDILY 420
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 32/158 (20%)
Query: 166 SNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR 225
S++++LDLS F++ N L LK L+L+Y ++K +D
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE----------------- 308
Query: 226 CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGL 285
A L L+L YN + N+ +GL ++ ++DL++N+ +
Sbjct: 309 ---------AFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQDQTF 358
Query: 286 QNLTSLKHLLLDSN-----RFNSSIPNWLYRFNRLESL 318
+ L L+ L L N F SIP+ N+L +L
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 774 NLKALQSFNLSNNFFTG-RIPESIGAMRSLESIDFSLNQL 812
NLKAL +LS N + S G + SL+SIDFS NQ+
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 118/276 (42%), Gaps = 54/276 (19%)
Query: 217 SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRN 275
++ KL + + +LPP N LT L L N D S +P +F +L L + N
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN--DLSSLPRGIFHNTPKLTTLSMSNN 151
Query: 276 NFQGPIPEGLQNLTSLKHLLLDSNRFN----SSIPNWLY---RFNRL---------ESLG 319
N + + Q TSL++L L SNR S IP+ + +N L E L
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211
Query: 320 VSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDI-----FSGCVSSGLEILVLR 374
S+NS+ V+R +V L+ +KL + + D + G V L L
Sbjct: 212 ASHNSIN--VVRGPV------NVELTILKLQH--NNLTDTAWLLNYPGLVEVDLSYNELE 261
Query: 375 GSSVSGHLTYKLGQFKNLYYLDLSNNSIVG------PIPFSLGHLSTLQFIDLSYNELNG 428
+ H K+ + + LY +SNN +V PIP TL+ +DLS+N L
Sbjct: 262 --KIMYHPFVKMQRLERLY---ISNNRLVALNLYGQPIP-------TLKVLDLSHNHLLH 309
Query: 429 MNDNWIPPF-QLATLGLRHCHLGSRFPSWLHSQKHL 463
+ N P F +L L L H + + S H+ K+L
Sbjct: 310 VERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 74/181 (40%), Gaps = 8/181 (4%)
Query: 167 NLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRC 226
NL L L N L + GL+ L+ LDLS ++ D + L L L L RC
Sbjct: 56 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRC 114
Query: 227 QLHHLPPLAIANFSTLTTLDLLYNQFDNSF--VPNWVF-GLIQLVFLDLRRNNFQGPIPE 283
L L P F L L LY Q DN+ +P+ F L L L L N
Sbjct: 115 GLQELGP---GLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 170
Query: 284 GLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVM 343
+ L SL LLL NR P+ RL +L + N+L ++A L L+ +
Sbjct: 171 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 230
Query: 344 L 344
L
Sbjct: 231 L 231
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 74/181 (40%), Gaps = 8/181 (4%)
Query: 167 NLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRC 226
NL L L N L + GL+ L+ LDLS ++ D + L L L L RC
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRC 115
Query: 227 QLHHLPPLAIANFSTLTTLDLLYNQFDNSF--VPNWVF-GLIQLVFLDLRRNNFQGPIPE 283
L L P F L L LY Q DN+ +P+ F L L L L N
Sbjct: 116 GLQELGP---GLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171
Query: 284 GLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVM 343
+ L SL LLL NR P+ RL +L + N+L ++A L L+ +
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
Query: 344 L 344
L
Sbjct: 232 L 232
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL----- 197
N RYLNL + +L +L+ L LS N + + GL L L+L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 198 ------SYVNLSKASD-WLR----------VTNTLPSLVKLRLSRCQLHHLPPLAIANFS 240
++ LSK + WLR N +PSL +L L +L L ++ A F
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--ELKRLEYISEAAFE 153
Query: 241 TLTTLDLLYNQFDN-SFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN 299
L L L N +PN + L++L L+L N P Q LTSL+ L L
Sbjct: 154 GLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 300 RFNSSIPNWLYRFNRLESLGVSNNSL 325
+ + N LE L +S+N+L
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL----- 197
N RYLNL + +L +L+ L LS N + + GL L L+L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 198 ------SYVNLSKASD-WLR----------VTNTLPSLVKLRLSRCQLHHLPPLAIANFS 240
++ LSK + WLR N +PSL +L L +L L ++ A F
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--ELKRLEYISEAAFE 153
Query: 241 TLTTLDLLYNQFDN-SFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN 299
L L L N +PN + L++L L+L N P Q LTSL+ L L
Sbjct: 154 GLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 300 RFNSSIPNWLYRFNRLESLGVSNNSL 325
+ + N LE L +S+N+L
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 9/187 (4%)
Query: 164 NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRL 223
NL NL L L N + + L L+ L LS L + + + T L +LR+
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT-----LQELRV 128
Query: 224 SRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIP 282
++ + + + ++L N +S + N F G+ +L ++ + N IP
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP 187
Query: 283 EGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
+GL SL L LD N+ L N L LG+S NS+ S+A+ +LR +
Sbjct: 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 343 MLSCVKL 349
L+ KL
Sbjct: 246 HLNNNKL 252
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 93/233 (39%), Gaps = 23/233 (9%)
Query: 268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG 327
LDL+ N +NL +L L+L +N+ + P +LE L +S N L+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 328 RVIRSMASLCNLRSVMLSCVKLSQEI----SEIFDIFSGC---VSSGLEILVLRGSSVSG 380
+ +L LR K+ + + +++ + G SSG+E +G
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 381 HL--------TYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDN 432
++ T G +L L L N I SL L+ L + LS+N ++ +++
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 433 WIPPFQLATLGLRHCHLGS----RFPSWLHSQKHLNYLDLSYSGITGSIPNIF 481
+ T LR HL + + P L K++ + L + I+ N F
Sbjct: 235 SL----ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 9/187 (4%)
Query: 164 NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRL 223
NL NL L L N + + L L+ L LS L + + + T L +LR+
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT-----LQELRV 128
Query: 224 SRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIP 282
++ + + + ++L N +S + N F G+ +L ++ + N IP
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP 187
Query: 283 EGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
+GL SL L LD N+ L N L LG+S NS+ S+A+ +LR +
Sbjct: 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 343 MLSCVKL 349
L+ KL
Sbjct: 246 HLNNNKL 252
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 93/233 (39%), Gaps = 23/233 (9%)
Query: 268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG 327
LDL+ N +NL +L L+L +N+ + P +LE L +S N L+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 328 RVIRSMASLCNLRSVMLSCVKLSQEI----SEIFDIFSGC---VSSGLEILVLRGSSVSG 380
+ +L LR K+ + + +++ + G SSG+E +G
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 381 HL--------TYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDN 432
++ T G +L L L N I SL L+ L + LS+N ++ +++
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 433 WIPPFQLATLGLRHCHLGS----RFPSWLHSQKHLNYLDLSYSGITGSIPNIF 481
+ T LR HL + + P L K++ + L + I+ N F
Sbjct: 235 SL----ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 53/248 (21%)
Query: 460 QKHLNYLDLSYSG-------ITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 512
Q L++ D YSG I + ++F S IY + + N I N T +
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN-----IKNFTVS---- 310
Query: 513 VLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ- 571
G+ P S + LDFSNN ++ ++F L +L+ L L+ N L+
Sbjct: 311 ----GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKE 362
Query: 572 -GELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTIHSLKNCTA 630
++ + ++L LD+S N + + +K + S T +
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYD---------------EKKGDCSWT-------KS 400
Query: 631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL 690
LL+L++ N + I + R VL L SNK S +PK + L LQ +++A N L
Sbjct: 401 LLSLNMSSNILTDTIFRCLPPRIK---VLDLHSNKIKS-IPKQVVKLEALQELNVASNQL 456
Query: 691 SGEVPRCI 698
VP I
Sbjct: 457 KS-VPDGI 463
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 19/216 (8%)
Query: 319 GVSNNSLQGRV-IRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSS 377
+SN LQG++ R + L + + Q +S++F + + ++ +
Sbjct: 253 SISNVKLQGQLDFRDF----DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308
Query: 378 VSGHLTYKL---GQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI 434
VSG + + +LD SNN + + + GHL+ L+ + L N+L ++ I
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK--I 366
Query: 435 PPFQLATLGLRHCHLGSRFPSWLHSQ------KHLNYLDLSYSGITGSIPNIFWSSASQI 488
L+ + S+ + K L L++S + +T + IF +I
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT---IFRCLPPRI 423
Query: 489 YVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGA 524
VLDL N+I + L+ L++ SN
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 747 YKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI-GAMRSLESI 805
++C+ ++++D N IP +V L+ALQ N+++N +P+ I + SL+ I
Sbjct: 416 FRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKI 473
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 101/416 (24%), Positives = 163/416 (39%), Gaps = 89/416 (21%)
Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
NL+ L L+ + +L +L++LDLS+N+L + W LS L L+L L
Sbjct: 51 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL----L 106
Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
L T+ L KL++ R + N T T + F
Sbjct: 107 GNPYKTLGETSLFSHLTKLQILR----------VGNMDTFTKIQ------RKDFA----- 145
Query: 263 GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNR----------FNSSIPNWLYRF 312
GL L L++ ++ Q P+ L+++ ++ HL+L + SS+ R
Sbjct: 146 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 205
Query: 313 NRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS------CVKLSQEISEIFDI-FSGCVS 365
L++ S L S+ R+V ++ +KL +IS + ++ F C
Sbjct: 206 TDLDTFHFSE--LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDCTL 263
Query: 366 SG-----------------LEILVLRGSSVSG-HLTYKLGQFKNLYYLD------LSNNS 401
+G +E L +R + +L Y L LY L NS
Sbjct: 264 NGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLS---TLYSLTERVKRITVENS 320
Query: 402 IVGPIPFSLG-HLSTLQFIDLSYNEL-------NGMNDNWIPPFQLATLGLRHCHLGS-- 451
V +P L HL +L+++DLS N + + D W P Q TL LR HL S
Sbjct: 321 KVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAW-PSLQ--TLILRQNHLASLE 377
Query: 452 RFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH---GQIPN 504
+ L + K+L +D+S + W ++ L+LS +IH G IP
Sbjct: 378 KTGETLLTLKNLTNIDISKNSFHSMPETCQW--PEKMKYLNLSSTRIHSVTGCIPK 431
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLRRNNFQ 278
KL L L L + LT L+L YNQ + VF L +L L L N
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQL- 95
Query: 279 GPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLY-RFNRLESLGVSNNSLQGRVIRSMASL 336
+P G+ +LT L L L N+ S+P+ ++ R +L+ L ++ N LQ + L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 337 CNLRSVMLSCVKLSQEISEIFD 358
NL+++ LS +L FD
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFD 176
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 141 MGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV 200
+ L +LNL Y Q + +L+ L L L+ N L L L+ L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 201 NLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNW 260
L V + L L +LRL+ QL +P A + L TL L NQ + VP+
Sbjct: 118 QLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS--VPHG 173
Query: 261 VF---GLIQLVFL 270
F G +Q + L
Sbjct: 174 AFDRLGKLQTITL 186
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLRRNNFQ 278
KL L L L + LT L+L YNQ + VF L +L L L N
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQL- 95
Query: 279 GPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLY-RFNRLESLGVSNNSLQGRVIRSMASL 336
+P G+ +LT L L L N+ S+P+ ++ R +L+ L ++ N LQ + L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 337 CNLRSVMLSCVKLSQEISEIFD 358
NL+++ LS +L FD
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFD 176
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 141 MGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV 200
+ L +LNL Y Q + +L+ L L L+ N L L L+ L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 201 NLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNW 260
L V + L L +LRL+ QL +P A + L TL L NQ + VP+
Sbjct: 118 QLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS--VPHG 173
Query: 261 VF---GLIQLVFL 270
F G +Q + L
Sbjct: 174 AFDRLGKLQTITL 186
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIP 282
LS+ ++ L ++F+ L L L N+ N N +GL L L L N + +P
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLKELALDTNQLKS-VP 339
Query: 283 EGL-QNLTSLKHLLLDSNRFNSSIP------NWLYRFNRLESLGVSNNSLQGRVIRSM 333
+G+ LTSL+ + L +N ++ S P WL + N + G + S G+ +RS+
Sbjct: 340 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK-NSQKEQGSAKCSGSGKPVRSI 396
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 119/295 (40%), Gaps = 35/295 (11%)
Query: 166 SNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNT----LPSLVKL 221
+++ Y+DLS N ++ L SF + DL ++ + + + L + N L SL+ L
Sbjct: 30 AHVNYVDLSLN-----SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 222 RLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVP-NWVFGLIQLVFLDLRRNNFQGP 280
+L Q L A + L L L D + + N+ L L L LR NN +
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
Query: 281 IPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFN-------RLESLGVSNNS---LQGRV 329
P N+ L L N+ S L F RL S+ + + + L
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 330 IRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGS----SVSGH---- 381
+ ++ ++ LS + +++ F F + ++ L+L S S GH
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRF--FDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262
Query: 382 ----LTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDN 432
T+K + + DLS + I + H + L+ + L+ NE+N ++DN
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 462 HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLT-------NAAQLEVL 514
H+NY+DLS + SI + +S S++ DL F ++ Q P L + L +L
Sbjct: 31 HVNYVDLSLN----SIAELNETSFSRLQ--DLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 515 SLGSNSF----SGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFL 570
L N F +GA + +NL L + ++ G++ ++ L L+ L LR N +
Sbjct: 85 KLDYNQFLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKP--LTSLEMLVLRDNNI 141
Query: 571 QG-ELTDCWMNYQNLMILDLSNNK 593
+ + ++N + +LDL+ NK
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNK 165
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 138 ICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL 197
+ + NL+ L L Q + P L L+NLQYL + N V +L L LS L L
Sbjct: 131 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNN--QVNDLTPLANLSKLTTLR- 185
Query: 198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDL 247
+ +K SD + +LP+L+++ L Q+ + PL AN S L + L
Sbjct: 186 --ADDNKISD-ISPLASLPNLIEVHLKDNQISDVSPL--ANLSNLFIVTL 230
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 266 QLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLES---LGVS 321
Q +LDL N+ + +P G+ LTSL L L N+ S+PN + FN+L S L +S
Sbjct: 29 QTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGV--FNKLTSLTYLNLS 84
Query: 322 NNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFS 361
N LQ L L+ + L+ +L +FD +
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT 124
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 51/262 (19%)
Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLS 350
+K L L N + L F +LE L +S+N L + + SL LR++ L+ +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLN----N 89
Query: 351 QEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL 410
+ E+ V +E L +++S ++ GQ K YL +NN I
Sbjct: 90 NYVQELL------VGPSIETLHAANNNIS-RVSCSRGQGKKNIYL--ANNKITMLRDLDE 140
Query: 411 GHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSY 470
G S +Q++DL NE++ +N F S L +L+L Y
Sbjct: 141 GCRSRVQYLDLKLNEIDTVN----------------------FAELAASSDTLEHLNLQY 178
Query: 471 SGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISS 530
+ I + + +++ LDLS N++ P +AA + +SL +N L LI
Sbjct: 179 NFIYDVKGQVVF---AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK----LVLIEK 231
Query: 531 NLIELDFSNN----SISGSIFH 548
L FS N + G+ FH
Sbjct: 232 ---ALRFSQNLEHFDLRGNGFH 250
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 65/166 (39%), Gaps = 16/166 (9%)
Query: 167 NLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNT-----LPSLVKL 221
NL L L N L + GL+ L+ LDLS + LRV + L L L
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLS------DNAQLRVVDPTTFRGLGHLHTL 109
Query: 222 RLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN-SFVPNWVF-GLIQLVFLDLRRNNFQG 279
L RC L L P F L L LY Q +N +P+ F L L L L N
Sbjct: 110 HLDRCGLQELGP---GLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS 166
Query: 280 PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
+ L SL LLL N P+ RL +L + N+L
Sbjct: 167 VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 258 PNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYR-FNRLE 316
P GL L +L L+ NN Q ++L +L HL L NR S+P +R + L+
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI-PSVPEHAFRGLHSLD 179
Query: 317 SLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIF 357
L + N + + L L ++ L LS +E+
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVL 220
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 22/116 (18%)
Query: 138 ICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL 197
I + +++ L+L+ TQ + P L LSNLQ L L N + N+ L GL+ L+ L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN--QITNISPLAGLTNLQYLSI 158
Query: 198 S---------YVNLSK----ASDWLRVTN-----TLPSLVKLRLSRCQLHHLPPLA 235
NLSK +D ++++ +LP+L+++ L Q+ + PLA
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLA 214
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
LDLSWN L + L+ LDLS + D +L L L L+ +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPIQS 92
Query: 231 LPPLAIANFSTLTTLDLLYNQFDN-SFVPNWVFG-LIQLVFLDLRRNNFQG-PIPEGLQN 287
L A+ FS L++L L N + + N+ G L L L++ N Q +PE N
Sbjct: 93 L---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 288 LTSLKHLLLDSNRFNS 303
LT+L+HL L SN+ S
Sbjct: 150 LTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
LDLSWN L + L+ LDLS + D +L L L L+ +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPIQS 91
Query: 231 LPPLAIANFSTLTTLDLLYNQFDN-SFVPNWVFG-LIQLVFLDLRRNNFQG-PIPEGLQN 287
L A+ FS L++L L N + + N+ G L L L++ N Q +PE N
Sbjct: 92 L---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 288 LTSLKHLLLDSNRFNS 303
LT+L+HL L SN+ S
Sbjct: 149 LTNLEHLDLSSNKIQS 164
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 39/163 (23%)
Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHL 449
KN+Y L+NN I G S +Q++DL NE++ +N
Sbjct: 123 KNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------------------- 160
Query: 450 GSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAA 509
F S L +L+L Y+ I + + +++ LDLS N++ P +AA
Sbjct: 161 ---FAELAASSDTLEHLNLQYNFIYDVKGQVVF---AKLKTLDLSSNKLAFMGPEFQSAA 214
Query: 510 QLEVLSLGSNSFSGALPLISSNLIELDFSNN----SISGSIFH 548
+ +SL +N L LI L FS N + G+ FH
Sbjct: 215 GVTWISLRNNK----LVLIEK---ALRFSQNLEHFDLRGNGFH 250
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 290 SLKHLLLDSNRFN--SSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV 347
SLK LL+D+N S +P L E LGVSNN L+ +S + V + +
Sbjct: 112 SLKSLLVDNNNLKALSDLPPLL------EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165
Query: 348 KLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG--P 405
K ++ + + + E+ L+ + K L L LS SIV
Sbjct: 166 KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225
Query: 406 IPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNY 465
I L L L F+ Y + N + P L L +R +L + P S L +
Sbjct: 226 ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL-TDLPELPQS---LTF 281
Query: 466 LDLS---YSGITGSIPNIFWSSAS 486
LD+S +SG++ PN+++ +AS
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNAS 305
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 165 LSNLQYLDLSWNFLYV-ENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRL 223
L++L L S FL V EN++ GLS L +L Y+N S +++ + + PSL +L +
Sbjct: 269 LTDLPELPQSLTFLDVSENIFS--GLSELPP-NLYYLNAS-SNEIRSLCDLPPSLEELNV 324
Query: 224 SRCQLHHLPPLA------IANFSTLTTLDLL---YNQFDNSFVPNWVFGLIQLVFLDLRR 274
S +L LP L IA+F+ L + L Q + P F I DLR
Sbjct: 325 SNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 384
Query: 275 NNFQGPIPEGLQNLTSL 291
N+ +PE QNL L
Sbjct: 385 NSHLAEVPELPQNLKQL 401
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 36/216 (16%)
Query: 136 RFICSMGNLRYLNLSYTQFVG--MIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK 193
R + + NL+ L+LS++ QL NL +LQYL+LS+N E L L+
Sbjct: 343 RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYN----EPLG-------LE 391
Query: 194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH-HLPPLAIANFSTLTTLDLLYNQF 252
D + P L L ++ LH P N L L+L +
Sbjct: 392 D---------------QAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 253 DNSFVPNWVFGLIQLVFLDLRRNNFQ-GPIPEG--LQNLTSLKHLLLDSNRFNSSIPNWL 309
D S + + GL L L+L+ N+FQ G I + LQ + SL+ L+L S S
Sbjct: 437 DTS-NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAF 495
Query: 310 YRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345
+ + L +S+NSL G SM +L +L+ + L+
Sbjct: 496 HGLRNVNHLDLSHNSLTG---DSMDALSHLKGLYLN 528
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 97/243 (39%), Gaps = 46/243 (18%)
Query: 140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE------------------ 181
++ +L+YLNLSY + +G+ L+ LD+++ L+V+
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Query: 182 -------NLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLP---SLVKLRLSRCQLHHL 231
N L GL L+ L+L + S + TN L SL L LS C L +
Sbjct: 433 HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS--ISKTNLLQMVGSLEILILSSCNLLSI 490
Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGL-----Q 286
A + LDL +N + ++ ++L++ NN + P L Q
Sbjct: 491 DQQAFHGLRNVNHLDLSHNSLTGDSMD--ALSHLKGLYLNMASNNIRIIPPHLLPALSQQ 548
Query: 287 NLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC 346
++ +L H LD N W Y+ N + L+ + A+ +LR V LS
Sbjct: 549 SIINLSHNPLDCTCSNIHFITW-YKENL--------HKLEDSEETTCANPPSLRGVKLSD 599
Query: 347 VKL 349
VKL
Sbjct: 600 VKL 602
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 119/294 (40%), Gaps = 23/294 (7%)
Query: 144 LRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF--LKDLDLSYV- 200
++ L+L+ G+ P + +++L+ L L+ N + L + SF L+DL Y+
Sbjct: 279 VQELDLTAAHLNGL-PSGIEGMNSLKKLVLNAN--SFDQLCQINAASFPSLRDL---YIK 332
Query: 201 -NLSKASDWLRVTNTLPSLVKLRLSRCQLH--HLPPLAIANFSTLTTLDLLYNQ----FD 253
N+ K R L +L KL LS + L + N L L+L YN+ D
Sbjct: 333 GNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLED 392
Query: 254 NSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFN 313
+F L+ + F L P QNL L+ L L ++S + L
Sbjct: 393 QAFKECPQLELLDVAFTHLHVKAPHSP----FQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 314 RLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVL 373
L L + NS Q I L + S+ + + +S F G + L L
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGL--RNVNHLDL 506
Query: 374 RGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELN 427
+S++G L K LY SNN + P P L LS I+LS+N L+
Sbjct: 507 SHNSLTGDSMDALSHLKGLYLNMASNNIRIIP-PHLLPALSQQSIINLSHNPLD 559
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 32/169 (18%)
Query: 160 PQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF-LKDLDLSYVNLSKASDWLRVTNTLPSL 218
P + + N+ Y + NF + + L F K+LDLS+ L + + P L
Sbjct: 4 PCVEVVPNITYQCMELNFYKIPD-----NLPFSTKNLDLSFNPLRHLGSYSFFS--FPEL 56
Query: 219 VKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN----------------------SF 256
L LSRC++ + A + S L+TL L N + +
Sbjct: 57 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLAS 116
Query: 257 VPNWVFG-LIQLVFLDLRRNNFQG-PIPEGLQNLTSLKHLLLDSNRFNS 303
+ N+ G L L L++ N Q +PE NLT+L+HL L SN+ S
Sbjct: 117 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 32/169 (18%)
Query: 160 PQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF-LKDLDLSYVNLSKASDWLRVTNTLPSL 218
P + + N+ Y + NF + + L F K+LDLS+ L + + P L
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPD-----NLPFSTKNLDLSFNPLRHLGSYSFFS--FPEL 54
Query: 219 VKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN----------------------SF 256
L LSRC++ + A + S L+TL L N + +
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 257 VPNWVFG-LIQLVFLDLRRNNFQG-PIPEGLQNLTSLKHLLLDSNRFNS 303
+ N+ G L L L++ N Q +PE NLT+L+HL L SN+ S
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 747 YKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNN 786
++C+ V+++D NN IP +VT+L+ALQ N+++N
Sbjct: 445 FRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASN 483
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 139 CSMGNLRYLNLSYTQF-VGMIPPQLGNLSNLQYLDLS 174
C M +LR+L+LS+ F V + + GNL+ L +L LS
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
L+ R N +G + +L SL+HL L N +S +W + L+ L + N Q
Sbjct: 55 LILKSSRINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 327 GRVIRSM-ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYK 385
+ S+ +L NL+++ + V+ EI I F+G S L L ++ S+ + +
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRI--DFAGLTS--LNELEIKALSLRNYQSQS 167
Query: 386 LGQFKNLYYLDL 397
L +++++L L
Sbjct: 168 LKSIRDIHHLTL 179
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
L+ R N +G + +L SL+HL L N +S +W + L+ L + N Q
Sbjct: 81 LILKSSRINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Query: 327 GRVIRSM-ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYK 385
+ S+ +L NL+++ + V+ EI I F+G S L L ++ S+ + +
Sbjct: 138 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRI--DFAGLTS--LNELEIKALSLRNYQSQS 193
Query: 386 LGQFKNLYYLDL 397
L +++++L L
Sbjct: 194 LKSIRDIHHLTL 205
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQF 252
K+LDLS+ L + + P L L LSRC++ + A + S L+TL L N
Sbjct: 32 KNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 253 DN----------------------SFVPNWVFG-LIQLVFLDLRRNNFQG-PIPEGLQNL 288
+ + + N+ G L L L++ N Q +PE NL
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 289 TSLKHLLLDSNRFNS 303
T+L+HL L SN+ S
Sbjct: 150 TNLEHLDLSSNKIQS 164
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 239 FSTLTTLDLLY-NQFDNSFVPNWVFG-LIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLL 295
F L L LY N + +P VF L QL LDL N+ + IP G NL SL H+
Sbjct: 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIY 111
Query: 296 LDSNRFNSSIPNWLYRFN 313
L +N ++ + +Y N
Sbjct: 112 LYNNPWDCECRDIMYLRN 129
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 454 PSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ-LE 512
P L + KHL +DLS + I+ ++ N +S+ +Q+ L LS+N++ P + + L
Sbjct: 47 PKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 513 VLSLGSNSFS 522
+LSL N S
Sbjct: 106 LLSLHGNDIS 115
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 628 CTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLAD 687
CT L T+ N+ ++ +P I + L L N+F +L+PK L + L ++DL++
Sbjct: 8 CTCLDTVVRCSNKGLKVLPKGIPRDVTE---LYLDGNQF-TLVPKELSNYKHLTLIDLSN 63
Query: 688 NNLSGEVPRCIHNLRAMVTL 707
N +S + N+ ++TL
Sbjct: 64 NRISTLSNQSFSNMTQLLTL 83
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 391 NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF 437
NL L L++N I S L +L+ +DLSYN L+ ++ +W P
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 25/154 (16%)
Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
NL+ L L+ + +L +L++LDLS+N+L + W LS L L+L L
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL----L 132
Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
L T+ L KL++ L + N T T + F
Sbjct: 133 GNPYKTLGETSLFSHLTKLQI----------LRVGNMDTFTKIQ------RKDFA----- 171
Query: 263 GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLL 296
GL L L++ ++ Q P+ L+++ ++ HL+L
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 115/289 (39%), Gaps = 45/289 (15%)
Query: 239 FSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDS 298
FS L LDL S +P+ + GL L L L N F+ N SL HL +
Sbjct: 277 FSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334
Query: 299 NRFNSSI-PNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVK-----LSQE 352
N + L L L +S++ ++ + CNL+ LS ++ ++
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIE------TSDCCNLQLRNLSHLQSLNLSYNEP 388
Query: 353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQ--FKNLY----------YLDLSNN 400
+S + F C LE+L L + L K Q F+NL+ LD+S+
Sbjct: 389 LSLKTEAFKEC--PQLELLDLAFT----RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442
Query: 401 SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ----LATLGLRHCHLGSRFPSW 456
+ +P LQ ++L N N Q L L L C L S
Sbjct: 443 QLFDGLP-------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495
Query: 457 LHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNL 505
S K +N++DLS++ +T S S IY L+L+ N I +P+L
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEAL-SHLKGIY-LNLASNHISIILPSL 542
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 38/217 (17%)
Query: 141 MGNLRYLNLSY--TQFVGMIPPQLGNLSNLQYLDLSWN---FLYVENLWWLPGLS----- 190
+ NLR L+LS+ + QL NLS+LQ L+LS+N L E P L
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408
Query: 191 -----------------FLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
LK L+LS+ L +S+ L + LP+L L L Q +H P
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNL---QGNHFPK 463
Query: 234 LAIANFSTLTT---LDLLYNQF-DNSFVPNWVFGLIQLV-FLDLRRNNFQGPIPEGLQNL 288
I ++L T L++L F D S + F ++++ +DL N E L +L
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
+ +L L SN + +P+ L ++ ++ + N L
Sbjct: 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 118/301 (39%), Gaps = 48/301 (15%)
Query: 214 TLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDL 272
+ P L +L L+ + + P A N L TL L N+ +P VF GL L LD+
Sbjct: 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDI 111
Query: 273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRS 332
N + Q+L +LK SL V +N L R+
Sbjct: 112 SENKIVILLDYMFQDLYNLK------------------------SLEVGDNDLVYISHRA 147
Query: 333 MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVS---SGLEILVLRGSSVSGHLTYKLGQF 389
+ L +L + L L+ +E G + L I +R S K+ +
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207
Query: 390 KNLYYLD-LSNNSIVG--------------PIPF-SLGHLSTLQFIDLSYNELNGMNDNW 433
+ YLD ++ N + G +P+ ++ HL L+F++LSYN ++ + +
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
Query: 434 IPP-FQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSAS-QIYVL 491
+ +L + L L P +L L++S + +T ++F S + + +L
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327
Query: 492 D 492
D
Sbjct: 328 D 328
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 22/130 (16%)
Query: 140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY 199
S +L L L+ + P NL NL+ L L N L + L GLS L LD+S
Sbjct: 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113
Query: 200 VNLSKASDWL----------------------RVTNTLPSLVKLRLSRCQLHHLPPLAIA 237
+ D++ R + L SL +L L +C L +P A++
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Query: 238 NFSTLTTLDL 247
+ L L L
Sbjct: 174 HLHGLIVLRL 183
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 323 NSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG 380
N + G V A + + + +++E SEI D V +G+ ++V RG++VSG
Sbjct: 97 NGMIGEVFYQRADMA------IGSLTINEERSEIVDFSVPFVETGISVMVARGTTVSG 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,789,559
Number of Sequences: 62578
Number of extensions: 1037540
Number of successful extensions: 2562
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1797
Number of HSP's gapped (non-prelim): 373
length of query: 938
length of database: 14,973,337
effective HSP length: 108
effective length of query: 830
effective length of database: 8,214,913
effective search space: 6818377790
effective search space used: 6818377790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)