Query 036642
Match_columns 938
No_of_seqs 895 out of 5621
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.2E-71 7E-76 695.2 48.2 581 36-863 28-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-56 3.7E-61 562.1 42.0 513 216-861 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.2E-38 2.6E-43 321.6 -11.5 481 241-813 46-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 7.1E-36 1.5E-40 314.6 7.5 371 169-618 81-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 8.3E-38 1.8E-42 315.6 -9.4 478 263-859 43-540 (565)
6 KOG4194 Membrane glycoprotein 100.0 1.6E-35 3.5E-40 311.9 5.7 298 391-694 79-381 (873)
7 KOG0618 Serine/threonine phosp 100.0 2.2E-35 4.7E-40 327.9 -3.2 407 218-704 23-432 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.2E-34 2.7E-39 321.9 -3.7 498 107-688 11-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.5E-32 3.1E-37 291.0 -2.9 374 114-623 4-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.2E-31 2.5E-36 284.2 1.7 366 264-813 6-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 6E-25 1.3E-29 222.8 -1.5 433 280-834 60-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 1E-21 2.2E-26 246.9 25.3 337 384-811 552-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 3E-21 6.5E-26 242.7 26.2 341 330-688 551-903 (1153)
14 KOG4237 Extracellular matrix p 99.9 2.2E-24 4.8E-29 218.7 -1.9 287 108-428 60-360 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 2.6E-21 5.6E-26 224.7 17.0 79 755-842 385-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2.5E-21 5.4E-26 224.8 15.5 266 464-824 204-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4.8E-19 1E-23 207.5 11.9 55 755-813 370-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.8E-19 1.5E-23 206.3 12.9 245 512-838 181-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-18 2.9E-23 190.5 3.1 160 532-691 25-206 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 8.1E-18 1.7E-22 184.3 5.0 107 245-351 3-122 (319)
21 KOG0617 Ras suppressor protein 99.6 9.4E-18 2E-22 151.2 -4.5 167 112-335 28-194 (264)
22 KOG0617 Ras suppressor protein 99.6 1.8E-17 3.9E-22 149.4 -3.3 181 605-841 32-216 (264)
23 PLN03150 hypothetical protein; 99.6 5.3E-15 1.1E-19 173.6 12.3 116 754-869 420-538 (623)
24 PLN03150 hypothetical protein; 99.5 7.6E-14 1.6E-18 163.9 12.1 149 33-200 368-525 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 9.2E-13 2E-17 141.0 -4.1 193 559-811 76-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.3E-17 140.5 -3.7 195 581-835 74-271 (722)
27 KOG1909 Ran GTPase-activating 99.2 6.4E-12 1.4E-16 127.4 0.6 241 109-349 22-310 (382)
28 COG4886 Leucine-rich repeat (L 99.1 5.9E-11 1.3E-15 133.8 7.4 199 562-819 97-296 (394)
29 COG4886 Leucine-rich repeat (L 99.1 7.6E-11 1.7E-15 132.9 7.6 197 586-841 97-294 (394)
30 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 127.8 0.5 213 115-352 119-341 (505)
31 PF14580 LRR_9: Leucine-rich r 99.1 5.9E-11 1.3E-15 113.8 2.6 108 115-228 17-125 (175)
32 KOG1909 Ran GTPase-activating 99.0 6.4E-11 1.4E-15 120.3 1.4 255 137-403 25-311 (382)
33 KOG3207 Beta-tubulin folding c 99.0 6.4E-11 1.4E-15 123.5 -0.6 165 163-327 118-285 (505)
34 PF14580 LRR_9: Leucine-rich r 99.0 5.4E-10 1.2E-14 107.1 4.9 63 139-205 16-79 (175)
35 KOG1259 Nischarin, modulator o 98.9 3.1E-10 6.6E-15 112.3 1.9 106 558-668 307-413 (490)
36 KOG1259 Nischarin, modulator o 98.9 7.6E-10 1.7E-14 109.5 3.2 205 109-326 206-412 (490)
37 PF08263 LRRNT_2: Leucine rich 98.8 4.6E-09 9.9E-14 75.3 4.2 39 36-74 2-43 (43)
38 KOG0531 Protein phosphatase 1, 98.8 7.6E-10 1.6E-14 124.8 -2.4 197 115-327 70-269 (414)
39 PF13855 LRR_8: Leucine rich r 98.7 8.5E-09 1.8E-13 81.1 3.4 60 777-836 2-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.7 1.1E-08 2.4E-13 122.8 5.0 251 143-405 546-809 (889)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.7E-08 3.7E-13 121.3 6.2 150 190-345 523-676 (889)
42 PF13855 LRR_8: Leucine rich r 98.6 2.2E-08 4.8E-13 78.8 3.6 60 753-812 2-61 (61)
43 KOG0531 Protein phosphatase 1, 98.6 3.8E-09 8.3E-14 119.1 -1.3 85 754-841 234-322 (414)
44 KOG2120 SCF ubiquitin ligase, 98.4 5.8E-09 1.3E-13 103.5 -7.5 183 118-324 186-374 (419)
45 KOG4579 Leucine-rich repeat (L 98.4 2.1E-08 4.5E-13 88.2 -3.2 86 755-843 80-165 (177)
46 KOG1859 Leucine-rich repeat pr 98.4 5.8E-09 1.3E-13 115.2 -8.3 181 110-302 102-292 (1096)
47 KOG1859 Leucine-rich repeat pr 98.4 1.2E-08 2.5E-13 112.9 -6.2 198 581-839 83-294 (1096)
48 KOG4579 Leucine-rich repeat (L 98.3 5.4E-08 1.2E-12 85.6 -3.0 86 754-843 55-141 (177)
49 KOG2120 SCF ubiquitin ligase, 98.2 2.7E-08 5.8E-13 98.9 -6.7 181 166-350 185-376 (419)
50 KOG2982 Uncharacterized conser 98.2 1.1E-06 2.3E-11 87.8 3.2 111 167-277 46-158 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.2 1.6E-06 3.4E-11 85.4 4.0 37 164-200 28-68 (388)
52 COG5238 RNA1 Ran GTPase-activa 98.1 5.5E-07 1.2E-11 88.6 -0.4 138 213-350 154-316 (388)
53 KOG2982 Uncharacterized conser 98.0 1.3E-06 2.8E-11 87.2 0.7 61 239-299 70-131 (418)
54 KOG1644 U2-associated snRNP A' 97.9 1.6E-05 3.5E-10 75.4 6.1 125 119-249 21-149 (233)
55 PRK15386 type III secretion pr 97.8 5.2E-05 1.1E-09 82.0 8.5 77 602-690 48-124 (426)
56 PF12799 LRR_4: Leucine Rich r 97.7 2.2E-05 4.8E-10 56.3 2.7 35 778-813 3-37 (44)
57 PRK15386 type III secretion pr 97.7 0.0001 2.2E-09 79.8 8.9 55 412-471 50-104 (426)
58 KOG3665 ZYG-1-like serine/thre 97.6 1.6E-05 3.5E-10 93.6 1.4 112 165-280 147-265 (699)
59 PF12799 LRR_4: Leucine Rich r 97.6 4.1E-05 9E-10 54.9 2.9 36 753-789 2-37 (44)
60 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.4E-09 69.8 6.1 67 212-278 60-126 (233)
61 KOG3665 ZYG-1-like serine/thre 97.5 4.9E-05 1.1E-09 89.5 2.5 141 166-333 122-270 (699)
62 KOG2739 Leucine-rich acidic nu 97.4 5.9E-05 1.3E-09 75.0 2.1 115 106-223 32-150 (260)
63 KOG4341 F-box protein containi 97.3 6.7E-06 1.4E-10 86.3 -6.7 231 117-349 138-384 (483)
64 KOG4341 F-box protein containi 97.2 4.6E-05 1E-09 80.1 -2.0 88 335-425 292-383 (483)
65 PF13306 LRR_5: Leucine rich r 97.0 0.0017 3.7E-08 60.0 6.6 36 212-248 54-89 (129)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00048 1E-08 68.7 1.8 93 135-230 36-130 (260)
67 PF13306 LRR_5: Leucine rich r 96.9 0.002 4.3E-08 59.5 5.9 61 211-274 30-90 (129)
68 KOG2123 Uncharacterized conser 96.2 0.00044 9.5E-09 68.9 -3.1 100 557-660 18-123 (388)
69 KOG2123 Uncharacterized conser 95.9 0.00039 8.4E-09 69.3 -5.2 79 238-319 39-123 (388)
70 KOG1947 Leucine rich repeat pr 95.8 0.0019 4.2E-08 75.1 -1.1 113 116-228 187-307 (482)
71 PF00560 LRR_1: Leucine Rich R 95.7 0.0046 1E-07 36.8 0.9 19 802-821 2-20 (22)
72 KOG1947 Leucine rich repeat pr 95.3 0.0022 4.8E-08 74.6 -2.7 13 288-300 294-306 (482)
73 PF00560 LRR_1: Leucine Rich R 95.1 0.0071 1.5E-07 36.0 0.4 19 754-773 2-20 (22)
74 KOG4308 LRR-containing protein 94.5 0.00061 1.3E-08 77.0 -9.9 184 488-692 89-304 (478)
75 KOG4308 LRR-containing protein 94.3 0.00094 2E-08 75.5 -8.8 61 560-620 235-304 (478)
76 KOG0473 Leucine-rich repeat pr 90.6 0.012 2.6E-07 57.5 -5.4 82 753-837 43-124 (326)
77 PF13504 LRR_7: Leucine rich r 89.3 0.2 4.4E-06 27.5 1.0 11 802-812 3-13 (17)
78 KOG3864 Uncharacterized conser 88.8 0.088 1.9E-06 50.8 -1.0 81 168-248 103-184 (221)
79 KOG3864 Uncharacterized conser 87.0 0.18 3.9E-06 48.7 -0.2 83 313-398 101-184 (221)
80 smart00370 LRR Leucine-rich re 85.4 0.74 1.6E-05 28.5 2.1 21 216-236 2-22 (26)
81 smart00369 LRR_TYP Leucine-ric 85.4 0.74 1.6E-05 28.5 2.1 21 216-236 2-22 (26)
82 KOG0473 Leucine-rich repeat pr 84.7 0.022 4.7E-07 55.7 -7.5 94 229-326 31-124 (326)
83 smart00369 LRR_TYP Leucine-ric 83.3 0.88 1.9E-05 28.2 1.8 14 800-813 2-15 (26)
84 smart00370 LRR Leucine-rich re 83.3 0.88 1.9E-05 28.2 1.8 14 800-813 2-15 (26)
85 PF13516 LRR_6: Leucine Rich r 79.6 0.98 2.1E-05 27.3 1.0 20 313-332 2-21 (24)
86 KOG4242 Predicted myosin-I-bin 78.9 16 0.00034 40.5 10.3 59 560-618 415-480 (553)
87 PF13516 LRR_6: Leucine Rich r 78.2 0.8 1.7E-05 27.7 0.3 20 678-697 2-21 (24)
88 PF04478 Mid2: Mid2 like cell 73.9 1.2 2.6E-05 40.9 0.3 50 889-938 50-101 (154)
89 smart00365 LRR_SD22 Leucine-ri 71.3 3.4 7.3E-05 25.7 1.8 15 799-813 1-15 (26)
90 smart00364 LRR_BAC Leucine-ric 66.2 4 8.6E-05 25.3 1.3 13 777-789 3-15 (26)
91 KOG4242 Predicted myosin-I-bin 64.1 71 0.0015 35.6 11.1 21 142-162 165-185 (553)
92 PF15102 TMEM154: TMEM154 prot 55.0 10 0.00023 34.7 2.6 30 888-917 58-88 (146)
93 smart00368 LRR_RI Leucine rich 50.9 11 0.00025 23.8 1.6 14 531-544 3-16 (28)
94 KOG3763 mRNA export factor TAP 48.2 10 0.00023 42.7 1.9 15 557-571 217-231 (585)
95 TIGR00864 PCC polycystin catio 46.8 11 0.00024 51.0 2.0 34 782-815 1-34 (2740)
96 KOG3763 mRNA export factor TAP 44.7 13 0.00028 42.1 1.8 38 189-226 217-254 (585)
97 PF08374 Protocadherin: Protoc 38.9 23 0.00051 34.7 2.4 27 885-911 35-61 (221)
98 PF08693 SKG6: Transmembrane a 35.1 47 0.001 23.1 2.7 22 888-909 12-33 (40)
99 PTZ00382 Variant-specific surf 34.4 22 0.00048 30.5 1.3 26 890-915 68-93 (96)
100 PF02439 Adeno_E3_CR2: Adenovi 29.4 39 0.00085 23.1 1.6 8 895-902 10-17 (38)
101 PF07172 GRP: Glycine rich pro 28.0 32 0.00068 29.5 1.2 20 4-23 5-24 (95)
102 TIGR00864 PCC polycystin catio 27.8 33 0.00072 46.8 1.9 64 758-824 1-69 (2740)
103 PF01102 Glycophorin_A: Glycop 27.5 28 0.00061 31.2 0.9 21 890-910 66-86 (122)
104 smart00367 LRR_CC Leucine-rich 24.0 54 0.0012 20.1 1.5 11 142-152 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-71 Score=695.24 Aligned_cols=581 Identities=35% Similarity=0.549 Sum_probs=391.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccC
Q 036642 36 ESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLD 115 (938)
Q Consensus 36 ~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~ 115 (938)
++|++||++||+++.+|.+.+.+|+..++||.|.||+|+. .++|+.++|++ +.+.|.+++.+..
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~---------------~~i~~~~~~~~~~ 91 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG---------------KNISGKISSAIFR 91 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC---------------CCccccCChHHhC
Confidence 5899999999999988888889997668999999999985 57999999988 3677888888899
Q ss_pred CCCCCEEeCCCCCCCCCccccccc-CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642 116 LKHLSYLDLSYNDFQGVQIPRFIC-SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD 194 (938)
Q Consensus 116 l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 194 (938)
+++|++|+|++|.+++. +|..+. .+++|++|+|++|++++.+|. +.+++|++|++++|.+
T Consensus 92 l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~---------------- 152 (968)
T PLN00113 92 LPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML---------------- 152 (968)
T ss_pred CCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc----------------
Confidence 99999999999998873 776544 888899999999888877764 3455555555554433
Q ss_pred EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642 195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274 (938)
Q Consensus 195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 274 (938)
++..+..++++++|++|++++|.+.+.. |..+.++++|++|++++
T Consensus 153 ----------------------------------~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 153 ----------------------------------SGEIPNDIGSFSSLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTLAS 197 (968)
T ss_pred ----------------------------------cccCChHHhcCCCCCEEECccCcccccC-ChhhhhCcCCCeeeccC
Confidence 3333334444445555555555444433 44555555555555555
Q ss_pred CcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchh
Q 036642 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEIS 354 (938)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 354 (938)
|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+..|..++++++|+.|++++|.+.+.+
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~- 276 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI- 276 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC-
Confidence 5555555555555555555555555555555555555555555555555555555544444444444444333333222
Q ss_pred hHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCC
Q 036642 355 EIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI 434 (938)
Q Consensus 355 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 434 (938)
|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++
T Consensus 277 ----------------------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~------ 322 (968)
T PLN00113 277 ----------------------------PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG------ 322 (968)
T ss_pred ----------------------------chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC------
Confidence 2233444455555555555555555445555555555554444433
Q ss_pred CccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCcee
Q 036642 435 PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 514 (938)
Q Consensus 435 ~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L 514 (938)
..|..+..+++|+.|++++|.+.+.+|..+
T Consensus 323 -----------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--------------------------------- 352 (968)
T PLN00113 323 -----------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNL--------------------------------- 352 (968)
T ss_pred -----------------cCChhHhcCCCCCEEECcCCCCcCcCChHH---------------------------------
Confidence 223333333333333333333332222221
Q ss_pred ecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcc
Q 036642 515 SLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKF 594 (938)
Q Consensus 515 ~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 594 (938)
+.+++|+.|++++|++++.+|..+..+++|+.|++++|++
T Consensus 353 ----------------------------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 353 ----------------------------------------GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred ----------------------------------------hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 2233444444444444444455555555555555555555
Q ss_pred cccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCcc
Q 036642 595 TGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKG 673 (938)
Q Consensus 595 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 673 (938)
.+.+|..++.+++|+.|++++|++++.+| .+.++++|+.|++++|++.+.+|.++. .+++|+.|++++|++.+.+|..
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCcc
Confidence 55555555555555555555555555555 555555666666666666665555554 4666666677767666666655
Q ss_pred ccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccc
Q 036642 674 LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNL 753 (938)
Q Consensus 674 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (938)
+ ..++|+.|++++|++++.+|..+.++++|
T Consensus 472 ~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L------------------------------------------------- 501 (968)
T PLN00113 472 F-GSKRLENLDLSRNQFSGAVPRKLGSLSEL------------------------------------------------- 501 (968)
T ss_pred c-ccccceEEECcCCccCCccChhhhhhhcc-------------------------------------------------
Confidence 4 34788999999999998888887776655
Q ss_pred eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642 754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN 833 (938)
Q Consensus 754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 833 (938)
+.|+|++|++.|.+|+.++++++|+.|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+.++++|+++++++
T Consensus 502 -~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 502 -MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580 (968)
T ss_pred -CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcCCCcCCCCcCCC-CCCCCC
Q 036642 834 NNLTGKIPSSTQLQSFDASSYAGN-DLCGAP 863 (938)
Q Consensus 834 N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 863 (938)
|+++|.+|..+++.++...+|.|| .+||.+
T Consensus 581 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 581 NHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999 899864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-56 Score=562.09 Aligned_cols=513 Identities=33% Similarity=0.533 Sum_probs=379.5
Q ss_pred CCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccc-cCCCCCCEEEccCCcccCCCCccccCCCCCCEE
Q 036642 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV-FGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL 294 (938)
Q Consensus 216 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 294 (938)
.+++.|++++|.+++..+..+..+++|++|+|++|++.+.+ |..+ ..+++|++|++++|.+++.+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~i-p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI-PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcC-ChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 35666666666666666666777777777777777776655 4433 3677777777777777666664 346677777
Q ss_pred ECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEcc
Q 036642 295 LLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLR 374 (938)
Q Consensus 295 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~ 374 (938)
++++|.+++.+|..++++++|++|++++|.+.+..|..++++++|+.|++++|.+.+.+|.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~------------------- 206 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR------------------- 206 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-------------------
Confidence 7777777767777777777777777777777766676666666666666666665554444
Q ss_pred CCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCC
Q 036642 375 GSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFP 454 (938)
Q Consensus 375 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p 454 (938)
.++.+++|++|++++|++.+.+|..+..+++|++|++++|.+++ .+|
T Consensus 207 ----------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------------~~p 253 (968)
T PLN00113 207 ----------ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-----------------------PIP 253 (968)
T ss_pred ----------HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc-----------------------ccC
Confidence 33344444444444444444444444444444444444444433 233
Q ss_pred cccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCc
Q 036642 455 SWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLI 533 (938)
Q Consensus 455 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~ 533 (938)
..+.++++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+.+..|
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------- 325 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------- 325 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-------
Confidence 334444444444444444444444433 234455555555555554444 33444445555555555444333
Q ss_pred EEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEc
Q 036642 534 ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHL 613 (938)
Q Consensus 534 ~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 613 (938)
..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus 326 ------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 326 ------------------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred ------------------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 23445788999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccccc
Q 036642 614 RKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG 692 (938)
Q Consensus 614 ~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 692 (938)
++|++.+.+| .+..+++|+.|++++|++++.+|..+. .+++|+.|++++|++++.+|..+..+++|+.|++++|++.+
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 9999999888 899999999999999999999998887 79999999999999999999999999999999999999998
Q ss_pred ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhc
Q 036642 693 EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEV 772 (938)
Q Consensus 693 ~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l 772 (938)
.+|..+.. . .|+.||+++|++++.+|..+
T Consensus 467 ~~p~~~~~-~--------------------------------------------------~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 467 GLPDSFGS-K--------------------------------------------------RLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred ecCccccc-c--------------------------------------------------cceEEECcCCccCCccChhh
Confidence 88865421 2 24789999999999999999
Q ss_pred cCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCC-CcCCCcCC
Q 036642 773 TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS-TQLQSFDA 851 (938)
Q Consensus 773 ~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~ 851 (938)
.++++|+.|+|++|++++.+|+.++++++|++|+|++|+++|.+|..+..+++|+.|++++|+++|.+|.. ..+..+..
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965 34455555
Q ss_pred CCcCCCCCCC
Q 036642 852 SSYAGNDLCG 861 (938)
Q Consensus 852 ~~~~~n~lc~ 861 (938)
..+.+|.+.|
T Consensus 576 l~ls~N~l~~ 585 (968)
T PLN00113 576 VNISHNHLHG 585 (968)
T ss_pred EeccCCccee
Confidence 5667775543
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-38 Score=321.57 Aligned_cols=481 Identities=23% Similarity=0.282 Sum_probs=251.7
Q ss_pred CCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEc
Q 036642 241 TLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGV 320 (938)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 320 (938)
.|+.+.+++|.+.. ....+.++..|.+|++.+|.+. ..|++++.+..++.++.++|++. .+|..++.+.+|.++++
T Consensus 46 ~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 34444444444432 1333444444555555555444 34444555555555555555544 34444555555555555
Q ss_pred cCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCC
Q 036642 321 SNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNN 400 (938)
Q Consensus 321 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 400 (938)
++|.+. ..++.++.+..++.++..+|++...++.++ .+. ++..+++.+|++....|..+. ++.|++||...|
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~-----~~~-~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N 193 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMV-----NLS-KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN 193 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccccCchHHH-----HHH-HHHHhhccccchhhCCHHHHH-HHHHHhcccchh
Confidence 555444 233344444444444444444444333311 111 344444444444443333333 666666666666
Q ss_pred eecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchh
Q 036642 401 SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNI 480 (938)
Q Consensus 401 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 480 (938)
-++ .+|..++.+.+|..|++..|++..+| +|..+..|+++.+..|.+.........+++++..||+..|+++ +.|+.
T Consensus 194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 194 LLE-TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred hhh-cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 655 55666666677777777777666654 4444444555555555544222222234455555555555554 44443
Q ss_pred HhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCc
Q 036642 481 FWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKL 560 (938)
Q Consensus 481 ~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L 560 (938)
+ ..+.+|.+||+|+|.+++.+++++++ .|+.|.+.+|.+...-... +++ + .... ++.|
T Consensus 271 ~-clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~i-------------i~~--g--T~~v---LKyL 328 (565)
T KOG0472|consen 271 I-CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREI-------------ISK--G--TQEV---LKYL 328 (565)
T ss_pred H-HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHH-------------Hcc--c--HHHH---HHHH
Confidence 3 12344455555555555444444444 4444444444432100000 000 0 0000 0001
Q ss_pred ce----eeccCcc---C-CCc----cchhhhcCCCCCEEEcCCCcccccCCcccCCCCC---CcEEEccccccccccccc
Q 036642 561 QF----LYLRGNF---L-QGE----LTDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS---LQSLHLRKNNLSGTIHSL 625 (938)
Q Consensus 561 ~~----L~ls~n~---l-~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~~~l 625 (938)
+. =.++.-+ - ++. .........+.+.|++++-+++ .+|+.+..-.. ....++++|++...+..+
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence 00 0000000 0 000 1111233456777888887777 56655433333 677888888887655566
Q ss_pred ccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhh
Q 036642 626 KNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMV 705 (938)
Q Consensus 626 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 705 (938)
..+..+.+.-+..|+..+-+|..+. .+++|..|+|++|-+.. +|..++.+..|+.||++.|+|. .+|+++..+..++
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~-~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELS-QLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLE 484 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHH-hhhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHH
Confidence 6666655443334444454555555 67888888888776654 7777777878888888888877 7777777666553
Q ss_pred hccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcC
Q 036642 706 TLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSN 785 (938)
Q Consensus 706 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 785 (938)
.+ -.++|++....|..++++.+|..|||.+
T Consensus 485 tl--------------------------------------------------las~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 485 TL--------------------------------------------------LASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred HH--------------------------------------------------HhccccccccChHHhhhhhhcceeccCC
Confidence 22 2345666644444477777777777777
Q ss_pred ccCcccCCccccccCCCCEEECCCCccc
Q 036642 786 NFFTGRIPESIGAMRSLESIDFSLNQLS 813 (938)
Q Consensus 786 N~l~~~ip~~~~~l~~L~~LdLs~N~l~ 813 (938)
|.+- .||+.+|++++|++|++++|++.
T Consensus 515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Cchh-hCChhhccccceeEEEecCCccC
Confidence 7776 67777777777777777777776
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-36 Score=314.62 Aligned_cols=371 Identities=22% Similarity=0.207 Sum_probs=237.7
Q ss_pred cEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECC
Q 036642 169 QYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLL 248 (938)
Q Consensus 169 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~ 248 (938)
++||+++|++..++...|.++++|+.+++..|.++.++. ......+|+.|+|.+|.|+.+..+.++.++.|+.|||+
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~---f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPR---FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhccc---ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 346666666666666666666666666666666666543 22334568888888888888888888888888888888
Q ss_pred CCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCch
Q 036642 249 YNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGR 328 (938)
Q Consensus 249 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 328 (938)
.|.++... ...+..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.
T Consensus 158 rN~is~i~-~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLISEIP-KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhhccc-CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88877533 34455556788888888888877777888888888888888888877777777888899999888888766
Q ss_pred hhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccc
Q 036642 329 VIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPF 408 (938)
Q Consensus 329 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 408 (938)
..-.|.++++|+.|.+..|++......+| -.+. ++++|+++.|++...-..++-+++.|+.|++++|.|...-++
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~F----y~l~-kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAF----YGLE-KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcce----eeec-ccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 56678888888888887777765433321 1111 344444444444444444444444444444444444444444
Q ss_pred cccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCc
Q 036642 409 SLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQI 488 (938)
Q Consensus 409 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 488 (938)
.+..+++|++|+|++|+|+.+ .+..|..+..|++|.|++|.+. .+.+..|..+++|
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l-----------------------~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL 367 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRL-----------------------DEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSL 367 (873)
T ss_pred hhhhcccceeEeccccccccC-----------------------ChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhh
Confidence 444444444444444444442 2333444445555555555544 3333333334444
Q ss_pred cEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCc
Q 036642 489 YVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGN 568 (938)
Q Consensus 489 ~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n 568 (938)
+.|||++|.++.. +.+ ....+..+++|+.|++.+|
T Consensus 368 ~~LdLr~N~ls~~-----------------------IED----------------------aa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 368 HKLDLRSNELSWC-----------------------IED----------------------AAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred hhhcCcCCeEEEE-----------------------Eec----------------------chhhhccchhhhheeecCc
Confidence 4444444443332 221 1123455788888888888
Q ss_pred cCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccc
Q 036642 569 FLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618 (938)
Q Consensus 569 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 618 (938)
++......+|.++++|++|||.+|.|..+.|.+|..+ .|+.|.+..-.+
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 8887777788888999999999999888888888888 888887765443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.3e-38 Score=315.58 Aligned_cols=478 Identities=27% Similarity=0.347 Sum_probs=298.4
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCee
Q 036642 263 GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342 (938)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 342 (938)
.-..++.+.+++|.++ .+.+.+.++..|.+|++++|+++ ..|..++.+..++.++.+.|+++ ..|+.++.+.+++.+
T Consensus 43 ~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL 119 (565)
T ss_pred hhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence 4456788888888887 44555777888888888888887 56777888888888888888776 456666666666666
Q ss_pred ecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEcc
Q 036642 343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422 (938)
Q Consensus 343 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 422 (938)
+.+.|.+....++ ++.+..++.++..+|+++ ..|..+.++.+|..+++.
T Consensus 120 ~~s~n~~~el~~~------------------------------i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~ 168 (565)
T KOG0472|consen 120 DCSSNELKELPDS------------------------------IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLE 168 (565)
T ss_pred hccccceeecCch------------------------------HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcc
Confidence 6666665544333 344455555555555555 344555555555555665
Q ss_pred CccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccC
Q 036642 423 YNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI 502 (938)
Q Consensus 423 ~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 502 (938)
+|++...++.......|++++..+|-++ .+|..++.+.+|..|++..|++. . .
T Consensus 169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~-------------------------l 221 (565)
T KOG0472|consen 169 GNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F-------------------------L 221 (565)
T ss_pred ccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c-------------------------C
Confidence 5555554444333333444443333333 23333444444444444444443 2 2
Q ss_pred CCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCC
Q 036642 503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ 582 (938)
Q Consensus 503 ~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 582 (938)
|+|..+..|.+++++.|++.- +| .+...+++++.+||+.+|+++ +.|+.+..+.
T Consensus 222 Pef~gcs~L~Elh~g~N~i~~----------------------lp---ae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIEM----------------------LP---AEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred CCCCccHHHHHHHhcccHHHh----------------------hH---HHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 244444444444444443331 11 123346788888888888888 6788888888
Q ss_pred CCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccccccc------CcCCcE----EECCCCc----cCCCCChh
Q 036642 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKN------CTALLT----LDVGENE----FVENIPTW 648 (938)
Q Consensus 583 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~------l~~L~~----L~Ls~N~----l~~~~p~~ 648 (938)
+|+.||+|+|.++ .+|.+++++ +|+.|.+.||++...=..+-+ ++.|+. =.++.-+ -.+..|.+
T Consensus 276 sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 276 SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 9999999999998 678889998 899999999987531111100 001110 0011000 01111222
Q ss_pred Hh---hhcCcccEEeeCCCcccccCCccccCCC---ccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhc
Q 036642 649 IG---ERFSRMVVLILRSNKFHSLLPKGLCDLA---FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLY 722 (938)
Q Consensus 649 ~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~ 722 (938)
.+ ....+.+.|++++-+++. +|+....-. -.+.++++.|++. ++|..+..++.+.+.-...+.
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn--------- 422 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN--------- 422 (565)
T ss_pred cccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC---------
Confidence 21 134567788888877776 444433222 2778889999887 788887777776543222111
Q ss_pred cCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCC
Q 036642 723 ASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSL 802 (938)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L 802 (938)
..+..+...+.++.+..|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|+.+..+..+
T Consensus 423 -----------------~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l 483 (565)
T KOG0472|consen 423 -----------------KISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL 483 (565)
T ss_pred -----------------ccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH
Confidence 12334455667778888999988887 78999999999999999999888 788877777777
Q ss_pred CEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcCCCCC
Q 036642 803 ESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDL 859 (938)
Q Consensus 803 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l 859 (938)
|.+-.++|++...-|+.+.++..|.+||+.+|.+..-.|.-+.++++......||.+
T Consensus 484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 777777788877666768888888888888888874434446666665555555533
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-35 Score=311.93 Aligned_cols=298 Identities=25% Similarity=0.198 Sum_probs=168.9
Q ss_pred CccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccC
Q 036642 391 NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSY 470 (938)
Q Consensus 391 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~ 470 (938)
.-+.||+++|++....+..|.++++|+++++.+|.++.+|........++.|+|.+|.+...-.+.+..++.|+.||||.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 45578899998888888888899999999999998888776555555677777777777766666677777777777777
Q ss_pred cccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCC---CCCCcEEEccCCcccccc
Q 036642 471 SGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLI---SSNLIELDFSNNSISGSI 546 (938)
Q Consensus 471 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~ 546 (938)
|.|+ .+|..-|..-.++++|+|++|.|+..-. .|..+.+|..|.|+.|+++...+.. +++|+.|++..|+|.-.-
T Consensus 159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 7776 4554444445567777777777765444 4555555666666666655443332 234444444444443210
Q ss_pred chhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-cc
Q 036642 547 FHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SL 625 (938)
Q Consensus 547 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l 625 (938)
...|.++++|+.|.+..|.+...-...|..+.++++|+|+.|++...-..++.++++|+.|+|+.|.|...-+ +.
T Consensus 238 ----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 238 ----GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred ----hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 1223444555555555555544444444455555555555555554444444455555555555555544333 44
Q ss_pred ccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccccccc
Q 036642 626 KNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEV 694 (938)
Q Consensus 626 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 694 (938)
..+++|++|||++|+++.--+..+ ..+..|++|+|++|++...-...|..+++|++|||++|.+++.|
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhcccceeEeccccccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 444455555555555443222222 23444555555555444444444444444555555555444433
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-35 Score=327.92 Aligned_cols=407 Identities=25% Similarity=0.297 Sum_probs=217.3
Q ss_pred CcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECc
Q 036642 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLD 297 (938)
Q Consensus 218 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 297 (938)
++.|+++.|.+-..|-....+.-+|+.||+++|++.. .|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 6666666666666555555555568888888887765 3677777788888888888776 567777788888888888
Q ss_pred CCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCc
Q 036642 298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSS 377 (938)
Q Consensus 298 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 377 (938)
+|.+. ..|..+..+.+|+.|+++.|++. .+|..+..+..+..+..++|......+. . .++.+++..|.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--------~--~ik~~~l~~n~ 167 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ--------T--SIKKLDLRLNV 167 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc--------c--cchhhhhhhhh
Confidence 87775 57888888888888888888775 5666777777777777777722221111 1 35666666666
Q ss_pred CccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCccc
Q 036642 378 VSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWL 457 (938)
Q Consensus 378 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l 457 (938)
+.+.++..+..++. .|||++|.+. . ..+..+.+|+.+....|++..+.
T Consensus 168 l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~--------------------------- 215 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE--------------------------- 215 (1081)
T ss_pred cccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE---------------------------
Confidence 66666666655555 5777777766 1 24556666777776666665431
Q ss_pred CCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEc
Q 036642 458 HSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDF 537 (938)
Q Consensus 458 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~l 537 (938)
..-++|+.|+.++|.++...+.. ...+|+++++++|++++.+..+..+.+|+.++..+|++..
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~-------------- 278 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA-------------- 278 (1081)
T ss_pred ecCcchheeeeccCcceeecccc---ccccceeeecchhhhhcchHHHHhcccceEecccchhHHh--------------
Confidence 11234555555555554222211 1233444444444444332222233333333333332211
Q ss_pred cCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCccc-CCCC-CCcEEEccc
Q 036642 538 SNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISL-GSLI-SLQSLHLRK 615 (938)
Q Consensus 538 s~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~-~L~~L~L~~ 615 (938)
.+..+...++|+.|.+..|.+. .+|+....+.+|++|+|..|++. ..|+.+ .-+. +|..|+.+.
T Consensus 279 ------------lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 279 ------------LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred ------------hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence 0111222344455555555544 33334444455555555555554 223221 1111 234444444
Q ss_pred cccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccccccc
Q 036642 616 NNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEV 694 (938)
Q Consensus 616 n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 694 (938)
|++...+. .=...+.|+.|.+.+|.++...-+-+- ++++|++|+|++|++.......+.++..|+.|+||+|+++ .+
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~L 422 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TL 422 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hh
Confidence 44433222 222333444444555544443322222 3444555555555444433334444444455555555444 44
Q ss_pred chhhhcchhh
Q 036642 695 PRCIHNLRAM 704 (938)
Q Consensus 695 p~~l~~l~~L 704 (938)
|+++.++..|
T Consensus 423 p~tva~~~~L 432 (1081)
T KOG0618|consen 423 PDTVANLGRL 432 (1081)
T ss_pred hHHHHhhhhh
Confidence 4444444444
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.2e-34 Score=321.88 Aligned_cols=498 Identities=25% Similarity=0.264 Sum_probs=320.8
Q ss_pred ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL 186 (938)
Q Consensus 107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~ 186 (938)
..||..+..-.++..|++++|-+-..+ -+++.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.|...+ ...
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp-~s~ 87 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP-SSC 87 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-hhh
Confidence 456666666666888888888776432 234455556888888888877 67888888888888888888776543 334
Q ss_pred CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642 187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ 266 (938)
Q Consensus 187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 266 (938)
.++.+|+++.|.+|.+... |..+..+++|+.|+++.|.+.. .|..+..+..
T Consensus 88 ~~~~~l~~lnL~~n~l~~l---------------------------P~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~ 138 (1081)
T KOG0618|consen 88 SNMRNLQYLNLKNNRLQSL---------------------------PASISELKNLQYLDLSFNHFGP--IPLVIEVLTA 138 (1081)
T ss_pred hhhhcchhheeccchhhcC---------------------------chhHHhhhcccccccchhccCC--CchhHHhhhH
Confidence 4455555555555544443 2355555666666666666543 3555666666
Q ss_pred CCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCC
Q 036642 267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC 346 (938)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 346 (938)
+..+..++|..... ++.. .++.+++..|.+.+.++..+..++. .|+|.+|.+. ...+..+++|+.+....
T Consensus 139 ~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~r 208 (1081)
T KOG0618|consen 139 EEELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCER 208 (1081)
T ss_pred HHHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhh
Confidence 66666666622111 1111 1666666666666666666666555 6777777665 23455666667666666
Q ss_pred CcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccC
Q 036642 347 VKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNEL 426 (938)
Q Consensus 347 n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 426 (938)
|++.... ..-++++.|+...|.++...+. ....+|++++++.|++++ +|.++..+.+|+.++..+|.+
T Consensus 209 n~ls~l~---------~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 209 NQLSELE---------ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred cccceEE---------ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhH
Confidence 6665321 1122778888888887743332 234578899999999884 568999999999999999999
Q ss_pred CCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcC-ccEEecccccccccCC-C
Q 036642 427 NGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQ-IYVLDLSFNQIHGQIP-N 504 (938)
Q Consensus 427 ~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~-~ 504 (938)
+.++...+...+|+.|.+..|.+. .+|......++|++|+|..|++. .+|+.++..... +..|+.+.|++...+. +
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence 888888888888999998888887 56666788999999999999998 677766655544 6677777766654332 1
Q ss_pred ccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCC
Q 036642 505 LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584 (938)
Q Consensus 505 l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 584 (938)
-... +.|+.|.+.+|.+++..+. .+.+.++|+.|+|++|++.......+.++..|
T Consensus 355 e~~~---------------------~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 355 ENNH---------------------AALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL 409 (1081)
T ss_pred chhh---------------------HHHHHHHHhcCcccccchh----hhccccceeeeeecccccccCCHHHHhchHHh
Confidence 1222 3445555555555544332 23446677777777777765444556677777
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC
Q 036642 585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN 664 (938)
Q Consensus 585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n 664 (938)
++|+||+|+++ .+|..+..++.|++|...+|++.. .|.+..++.|+.+|+|.|+++...-.... ..++|++|++++|
T Consensus 410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fPe~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FPELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGN 486 (1081)
T ss_pred HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-chhhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCC
Confidence 77777777777 566777777777777777777764 33677777777777777776543222211 2267777777777
Q ss_pred cccccCCccccCCCccCeeecccc
Q 036642 665 KFHSLLPKGLCDLAFLQIVDLADN 688 (938)
Q Consensus 665 ~l~~~~~~~l~~l~~L~~L~Ls~N 688 (938)
.-....-..|..+..+...++.-|
T Consensus 487 ~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 487 TRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccccchhhhHHhhhhhheecccC
Confidence 543333344444555555555444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-32 Score=291.03 Aligned_cols=374 Identities=26% Similarity=0.312 Sum_probs=218.4
Q ss_pred cCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642 114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK 193 (938)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 193 (938)
+-++.+|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++..+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v------------ 70 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV------------ 70 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh------------
Confidence 345678889999999998789999999999999999999988 7899999999999999988876532
Q ss_pred EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCC-CcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642 194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL-PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL 272 (938)
Q Consensus 194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 272 (938)
...+..++.|+.+.+.+|++... .|..+..+..|++|||++|++.. .|..+..-+++-+|+|
T Consensus 71 ---------------hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 71 ---------------HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNL 133 (1255)
T ss_pred ---------------hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEEc
Confidence 12333444555555555544211 22344455666666666666554 3555555556666666
Q ss_pred cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccc
Q 036642 273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQE 352 (938)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 352 (938)
++|+|..+....+.+++.|-.|+|++|++. .+|+-+..+..|++|+|++|.+...-...+..+++
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-------------- 198 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-------------- 198 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh--------------
Confidence 666655322233445555555666655554 34444555555555555555544333332333333
Q ss_pred hhhHHHhhhcccccCccEEEccCCcCc-cccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCC
Q 036642 353 ISEIFDIFSGCVSSGLEILVLRGSSVS-GHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMND 431 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 431 (938)
|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. .+|..+.++++|+.|+||+|+|+.+..
T Consensus 199 ---------------L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 199 ---------------LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM 262 (1255)
T ss_pred ---------------hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec
Confidence 333333332221 234556667777777777777776 567777777777777777777776533
Q ss_pred CCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccC
Q 036642 432 NWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQL 511 (938)
Q Consensus 432 ~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L 511 (938)
..... .+|++|++|.|+++ .+|+.+. .++.|+.|.+.+|+++-
T Consensus 263 ~~~~W------------------------~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~F----------- 305 (1255)
T KOG0444|consen 263 TEGEW------------------------ENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTF----------- 305 (1255)
T ss_pred cHHHH------------------------hhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCcccc-----------
Confidence 22222 34444444444444 3333331 23333333333333220
Q ss_pred ceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCC
Q 036642 512 EVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSN 591 (938)
Q Consensus 512 ~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 591 (938)
.-++..++.+..|+++..++|.+. ..|+.++.|..|+.|.|+.
T Consensus 306 ------------------------------------eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 306 ------------------------------------EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred ------------------------------------cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 001123444555666666665555 5666666666666666666
Q ss_pred CcccccCCcccCCCCCCcEEEccccccccccc
Q 036642 592 NKFTGNLPISLGSLISLQSLHLRKNNLSGTIH 623 (938)
Q Consensus 592 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 623 (938)
|++. .+|+.+.-++.|+.|+++.|.-.-.+|
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 6666 566666666666666666665443443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.2e-31 Score=284.24 Aligned_cols=366 Identities=24% Similarity=0.370 Sum_probs=219.0
Q ss_pred CCCCCEEEccCCcccC-CCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCee
Q 036642 264 LIQLVFLDLRRNNFQG-PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342 (938)
Q Consensus 264 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 342 (938)
++-.+-.|+++|.++| .+|.....+++++.|.|...++. .+|..++.+.+|++|.+++|++... ...
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGE---------- 73 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGE---------- 73 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhh----------
Confidence 3444556666666663 45666666666666666655554 4555566666666666555554321 111
Q ss_pred ecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeec-ccccccccCCCCCcEEEc
Q 036642 343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIV-GPIPFSLGHLSTLQFIDL 421 (938)
Q Consensus 343 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L 421 (938)
+..++.|+.+++..|++. .-+|..+-.+..|+.|||
T Consensus 74 -------------------------------------------Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 74 -------------------------------------------LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred -------------------------------------------hccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 334445555555555443 234555556666666666
Q ss_pred cCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEeccccccccc
Q 036642 422 SYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQ 501 (938)
Q Consensus 422 s~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 501 (938)
|+|++.++| ..+..-+++-.|+||+|+|. .||...+.+++.|-+||||+|++...
T Consensus 111 ShNqL~EvP------------------------~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~L 165 (1255)
T KOG0444|consen 111 SHNQLREVP------------------------TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEML 165 (1255)
T ss_pred chhhhhhcc------------------------hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhc
Confidence 666666543 33334445555555555555 56666666677777777777777766
Q ss_pred CCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCC-Cccchhhhc
Q 036642 502 IPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ-GELTDCWMN 580 (938)
Q Consensus 502 ~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~-~~~~~~~~~ 580 (938)
+|.+..+..|++|++++|.+.-. -...+..+++|++|.+++.+-+ ..+|.++..
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hf-------------------------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHF-------------------------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHH-------------------------HHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 66666666666666666654311 0112233567777888876544 357888888
Q ss_pred CCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEe
Q 036642 581 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLI 660 (938)
Q Consensus 581 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~ 660 (938)
+.+|..+|+|.|.+. .+|+.+-.+++|+.|+|++|+++..--......+|++|++|.|+++. +|
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP-------------- 284 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-LP-------------- 284 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-ch--------------
Confidence 889999999999888 88888888889999999888887543344444455555555555432 44
Q ss_pred eCCCcccccCCccccCCCccCeeeccccccc-cccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeee
Q 036642 661 LRSNKFHSLLPKGLCDLAFLQIVDLADNNLS-GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV 739 (938)
Q Consensus 661 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (938)
+.++.++.|+.|.+.+|+++ .-||..++.+.+|+.
T Consensus 285 -----------~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev--------------------------------- 320 (1255)
T KOG0444|consen 285 -----------DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV--------------------------------- 320 (1255)
T ss_pred -----------HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH---------------------------------
Confidence 44444555555555555443 134555555555422
Q ss_pred ecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccc
Q 036642 740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLS 813 (938)
Q Consensus 740 ~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~ 813 (938)
+..++|++. ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+--
T Consensus 321 -----------------f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 321 -----------------FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -----------------HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 223445544 56666666666666666666666 56666666666777777666544
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=6e-25 Score=222.84 Aligned_cols=433 Identities=22% Similarity=0.241 Sum_probs=265.3
Q ss_pred CCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCC-CcCccchhhHHH
Q 036642 280 PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC-VKLSQEISEIFD 358 (938)
Q Consensus 280 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~ 358 (938)
.+|..+. +.-.+++|..|.|+...|..|+.+++|+.|||++|.|+.+.|.+|.+++++..|.+.+ |+++......|
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F- 136 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF- 136 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-
Confidence 4454332 3567788888888887778888888888888888888888888888888888777776 67766555533
Q ss_pred hhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccc
Q 036642 359 IFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ 438 (938)
Q Consensus 359 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 438 (938)
+.+. .++.|.+.-|++.-.....|..++++..|.+.+|.+...--..|..+..++.+.+..|.+...- ..+.
T Consensus 137 ---~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC----nL~w 208 (498)
T KOG4237|consen 137 ---GGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC----NLPW 208 (498)
T ss_pred ---hhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc----ccch
Confidence 3333 6777777777777777777888888888888888887544447888888888888888754320 0000
Q ss_pred cceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCC
Q 036642 439 LATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGS 518 (938)
Q Consensus 439 L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~ 518 (938)
+.. + ....|..+++.+...-..+.+.++...-+..|... ++.+
T Consensus 209 la~-~------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--------------------------~esl---- 251 (498)
T KOG4237|consen 209 LAD-D------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--------------------------LESL---- 251 (498)
T ss_pred hhh-H------HhhchhhcccceecchHHHHHHHhcccchhhhhhh--------------------------HHhH----
Confidence 000 0 00112222222222222222333221111111100 0000
Q ss_pred ccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccC
Q 036642 519 NSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNL 598 (938)
Q Consensus 519 n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 598 (938)
..=-.+.+...+..|. .-|+.+++|+.|++++|++++.-+.+|.+...+++|.|..|++...-
T Consensus 252 --------------~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~ 314 (498)
T KOG4237|consen 252 --------------PSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS 314 (498)
T ss_pred --------------HHhhccccCcCCcChH---HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH
Confidence 0000011111122221 23567888999999999999888888999999999999999988777
Q ss_pred CcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCC-ChhHhhhcCcccEEeeCCCcccccCCccccC
Q 036642 599 PISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENI-PTWIGERFSRMVVLILRSNKFHSLLPKGLCD 676 (938)
Q Consensus 599 p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 676 (938)
...|.++..|+.|+|.+|+|+...| +|..+.+|.+|.+-.|++.-.- -.|+++.+ +.++-.|..| . +.
T Consensus 315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl--------r~~~~~~~~~-C-q~ 384 (498)
T KOG4237|consen 315 SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL--------RKKSVVGNPR-C-QS 384 (498)
T ss_pred HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH--------hhCCCCCCCC-C-CC
Confidence 7788889999999999999988878 8888889999999888875431 23444322 2222222111 1 11
Q ss_pred CCccCeeecccccccc---ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccc
Q 036642 677 LAFLQIVDLADNNLSG---EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNL 753 (938)
Q Consensus 677 l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (938)
-..++.+++++..+.. .-|++.+...+ +..| ++..+.-
T Consensus 385 p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s--------------------~~cP-----------------~~c~c~~-- 425 (498)
T KOG4237|consen 385 PGFVRQIPISDVAFGDFRCGGPEELGCLTS--------------------SPCP-----------------PPCTCLD-- 425 (498)
T ss_pred CchhccccchhccccccccCCccccCCCCC--------------------CCCC-----------------CCcchhh--
Confidence 2235555565554431 11221111000 0000 0001111
Q ss_pred eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642 754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN 833 (938)
Q Consensus 754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 833 (938)
+...-|++.+. .+|..+. ..-.+|++.+|.++ .+|+. .+.+| .+|+|+|+++..--..|.++++|.+|-+||
T Consensus 426 -tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 426 -TVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred -hhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 12223444444 5555443 34567889999998 78877 67788 889999999887778889999999999988
Q ss_pred C
Q 036642 834 N 834 (938)
Q Consensus 834 N 834 (938)
|
T Consensus 498 n 498 (498)
T KOG4237|consen 498 N 498 (498)
T ss_pred C
Confidence 7
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1e-21 Score=246.88 Aligned_cols=337 Identities=21% Similarity=0.265 Sum_probs=205.4
Q ss_pred cccCCCCCccEEEccCCe------ecccccccccCCC-CCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcc
Q 036642 384 YKLGQFKNLYYLDLSNNS------IVGPIPFSLGHLS-TLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSW 456 (938)
Q Consensus 384 ~~l~~l~~L~~L~Ls~n~------l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~ 456 (938)
..|..+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+..+|..+ .+.+|+.|++.+|.+. .++..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 346677778877776543 2234555555553 5777777777777776554 3466777777776665 34455
Q ss_pred cCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCcEE
Q 036642 457 LHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIEL 535 (938)
Q Consensus 457 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L 535 (938)
+..+++|+.|+++++...+.+|. +..+++|+.|++++|.....+| .+..+++|+.|++++|...+.+|..
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~------- 700 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG------- 700 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-------
Confidence 56666667777666654445554 2445666666666655444444 4555555555555555433333321
Q ss_pred EccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccc
Q 036642 536 DFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 615 (938)
Q Consensus 536 ~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 615 (938)
.++++|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|+.|++.+
T Consensus 701 -------------------i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 701 -------------------INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE 756 (1153)
T ss_pred -------------------CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence 12455666666665544444432 345666666666665 455444 456666666655
Q ss_pred ccccc-------ccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccc
Q 036642 616 NNLSG-------TIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLAD 687 (938)
Q Consensus 616 n~l~~-------~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 687 (938)
+.... ..+ ....+++|+.|++++|...+.+|.++. ++++|+.|++++|...+.+|..+ .+++|+.|++++
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG 834 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCC
Confidence 43211 111 222345677777777766666776665 57777777777765555566554 566777777777
Q ss_pred cccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc
Q 036642 688 NNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK 767 (938)
Q Consensus 688 N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ 767 (938)
|.....+|.. ..+++.|+|++|.++ .
T Consensus 835 c~~L~~~p~~-----------------------------------------------------~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 835 CSRLRTFPDI-----------------------------------------------------STNISDLNLSRTGIE-E 860 (1153)
T ss_pred CCcccccccc-----------------------------------------------------ccccCEeECCCCCCc-c
Confidence 6544333321 123467888888887 6
Q ss_pred CchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCc
Q 036642 768 IPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQ 811 (938)
Q Consensus 768 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~ 811 (938)
+|..++.+++|+.|+|++|.--..+|..+..+++|+.|++++|.
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 88888888888888888854444678888888888888888885
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3e-21 Score=242.67 Aligned_cols=341 Identities=21% Similarity=0.233 Sum_probs=162.7
Q ss_pred hHhhhccCCCCeeecCCCcCc------cchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeec
Q 036642 330 IRSMASLCNLRSVMLSCVKLS------QEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIV 403 (938)
Q Consensus 330 ~~~l~~l~~L~~L~L~~n~l~------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 403 (938)
+..|.++++|+.|.+..+... ..+|. .+..++.+|+.|.+.++.+.. +|..+ .+.+|+.|++.+|++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~----~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE----GFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCc----chhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc
Confidence 456777778887777654321 22233 223344466777776666543 34334 3566777777777665
Q ss_pred ccccccccCCCCCcEEEccCcc-CCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHh
Q 036642 404 GPIPFSLGHLSTLQFIDLSYNE-LNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFW 482 (938)
Q Consensus 404 ~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 482 (938)
.++..+..+++|+.|+|+++. +..+| .+....+|++|++++|.....+|..+..+++|+.|++++|...+.+|...
T Consensus 625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 625 -KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred -ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 355556666777777776654 33332 34445566666666665555556666666666666666654444455432
Q ss_pred hcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCC--CCCCcEEEccCCccc---cccchhhhhhhccC
Q 036642 483 SSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLI--SSNLIELDFSNNSIS---GSIFHFICYRAHEL 557 (938)
Q Consensus 483 ~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~--~~~L~~L~ls~n~l~---~~~~~~~~~~l~~l 557 (938)
.+++|+.|++++|.....+|.+ ..+|+.|++++|.+.. +|.. +++|++|.+.++... +.............
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhcc
Confidence 3455555555555433333322 2345555555555432 2221 334444444432210 00000000001112
Q ss_pred CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECC
Q 036642 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG 637 (938)
Q Consensus 558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls 637 (938)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.+ .++|+.|+++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECC
Confidence 344455555544444444444455555555555443333444433 3444555555544333322211 1344444454
Q ss_pred CCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccc
Q 036642 638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN 688 (938)
Q Consensus 638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 688 (938)
+|.+. .+|.++. .+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus 855 ~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 855 RTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 44443 2444443 3444444444443333334444444444444444444
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=2.2e-24 Score=218.74 Aligned_cols=287 Identities=22% Similarity=0.178 Sum_probs=188.3
Q ss_pred cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCC-CcccccCcccc
Q 036642 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW-NFLYVENLWWL 186 (938)
Q Consensus 108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~-n~i~~~~~~~~ 186 (938)
++|..+.. .-+.++|..|+|+.+ -|..|+.+++||.||||+|+|+.+-|.+|.++.+|.+|.+.+ |+|+......|
T Consensus 60 eVP~~LP~--~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 60 EVPANLPP--ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cCcccCCC--cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 44444432 456788999999954 455788999999999999999989999999999888877766 88998888899
Q ss_pred CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccC---------
Q 036642 187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFV--------- 257 (938)
Q Consensus 187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------- 257 (938)
.++..|+.|.+.-|++.-+.. ..+..+++|..|.+.+|.+..+....|..+..++.+.+..|.+-...-
T Consensus 137 ~gL~slqrLllNan~i~Cir~--~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQ--DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hhHHHHHHHhcChhhhcchhH--HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 999999999888888877644 678888899999999999888888888888889988888887432110
Q ss_pred --cccccCCCCCCEEEccCCcccCCCCccccC-CCCCCEEECcCCcCCCccc-hhhhcCCCCCEEEccCCcCCchhhHhh
Q 036642 258 --PNWVFGLIQLVFLDLRRNNFQGPIPEGLQN-LTSLKHLLLDSNRFNSSIP-NWLYRFNRLESLGVSNNSLQGRVIRSM 333 (938)
Q Consensus 258 --~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l 333 (938)
+..++...-..-..+.+.++....+..+.. +..+.+-..+.+...+..| ..|..+++|++|+|++|++++..+.+|
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 111112222222222222222111111110 0111111111111212222 234555555555555555555555555
Q ss_pred hccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCC
Q 036642 334 ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413 (938)
Q Consensus 334 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 413 (938)
.+...+++|.|..|++ ..+-...|.++..|+.|+|++|+|+...|.+|..+
T Consensus 295 e~~a~l~eL~L~~N~l-----------------------------~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKL-----------------------------EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred cchhhhhhhhcCcchH-----------------------------HHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 5555555555555544 43334457778888899999999998888889999
Q ss_pred CCCcEEEccCccCCC
Q 036642 414 STLQFIDLSYNELNG 428 (938)
Q Consensus 414 ~~L~~L~Ls~n~l~~ 428 (938)
..|.+|+|-.|.+.-
T Consensus 346 ~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNC 360 (498)
T ss_pred ceeeeeehccCcccC
Confidence 999999988887653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.6e-21 Score=224.66 Aligned_cols=79 Identities=25% Similarity=0.353 Sum_probs=50.0
Q ss_pred eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN 834 (938)
Q Consensus 755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 834 (938)
+.|++++|+++ .+|... ++|+.|++++|+++ .+|... .+|+.|++++|+|+ .+|..+.+++.|+.|++++|
T Consensus 385 ~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 385 KELIVSGNRLT-SLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred ceEEecCCccc-CCCCcc---cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 45666667666 355432 45666777777776 355432 34566777777776 56777777777777777777
Q ss_pred cccccCCC
Q 036642 835 NLTGKIPS 842 (938)
Q Consensus 835 ~l~g~ip~ 842 (938)
+|+|.+|.
T Consensus 456 ~Ls~~~~~ 463 (788)
T PRK15387 456 PLSERTLQ 463 (788)
T ss_pred CCCchHHH
Confidence 77766553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.5e-21 Score=224.80 Aligned_cols=266 Identities=26% Similarity=0.362 Sum_probs=179.2
Q ss_pred cEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccc
Q 036642 464 NYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSIS 543 (938)
Q Consensus 464 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~ 543 (938)
..|+++++.++ .+|..+. ++|+.|++++|+++.. |.. .++|++|++++|+++. +|..+++|+.|++++|.++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~l--p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PAL--PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CCC--CCCCcEEEecCCccCc-ccCcccccceeeccCCchh
Confidence 34555555555 4444332 2455555555555542 221 3456666666666663 3444567777777777665
Q ss_pred cccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc
Q 036642 544 GSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH 623 (938)
Q Consensus 544 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 623 (938)
. +|. ..++|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.+++. |
T Consensus 276 ~-Lp~-------lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L-P 338 (788)
T PRK15387 276 H-LPA-------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL-P 338 (788)
T ss_pred h-hhh-------chhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccccc-c
Confidence 3 221 12567778888888774 4432 4678888888888884 4432 24577788888888753 3
Q ss_pred ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchh
Q 036642 624 SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRA 703 (938)
Q Consensus 624 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 703 (938)
.+ ..+|+.|++++|++.+ +|. ..++|+.|++++|++++ +|.. .++|+.|++++|++++ +|... +
T Consensus 339 ~l--p~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s- 402 (788)
T PRK15387 339 TL--PSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---S- 402 (788)
T ss_pred cc--ccccceEecCCCccCC-CCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---c-
Confidence 22 2478888888888875 554 23577888888888875 5543 3568899999998873 55321 1
Q ss_pred hhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeC
Q 036642 704 MVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNL 783 (938)
Q Consensus 704 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L 783 (938)
.|+.|++++|+++ .+|... ..|+.|++
T Consensus 403 -------------------------------------------------~L~~LdLS~N~Ls-sIP~l~---~~L~~L~L 429 (788)
T PRK15387 403 -------------------------------------------------ELKELMVSGNRLT-SLPMLP---SGLLSLSV 429 (788)
T ss_pred -------------------------------------------------CCCEEEccCCcCC-CCCcch---hhhhhhhh
Confidence 1367899999998 477643 46788999
Q ss_pred cCccCcccCCccccccCCCCEEECCCCcccccCCccccCCC
Q 036642 784 SNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT 824 (938)
Q Consensus 784 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 824 (938)
++|+|+ .+|+.++++++|+.|+|++|++++.+|..+..++
T Consensus 430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 430 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred ccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 999998 7899999999999999999999999888875543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=4.8e-19 Score=207.54 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=28.4
Q ss_pred eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccc----ccCCCCEEECCCCccc
Q 036642 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIG----AMRSLESIDFSLNQLS 813 (938)
Q Consensus 755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~----~l~~L~~LdLs~N~l~ 813 (938)
+.|++++|+++ .+|..+. ..|+.|++++|+++ .+|+.+. .++.+..|++.+|+++
T Consensus 370 ~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 370 TTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 45555555555 3454443 24555556666555 3443332 2355566666666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6.8e-19 Score=206.27 Aligned_cols=245 Identities=24% Similarity=0.355 Sum_probs=160.7
Q ss_pred ceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCC
Q 036642 512 EVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSN 591 (938)
Q Consensus 512 ~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 591 (938)
..|+++++.++......+++++.|++++|+++. +|... .++|++|++++|+++ .+|..+. .+|+.|++++
T Consensus 181 ~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 181 TELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred eEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhh------ccCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 344444444443222223455555555555553 22111 245667777777666 3454443 3577777777
Q ss_pred CcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCC
Q 036642 592 NKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLP 671 (938)
Q Consensus 592 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 671 (938)
|.+. .+|..+. ++|+.|++++|+++..+..+. ++|+.|++++|++.+ +|..+. ++|+.|++++|+++. +|
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp---~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP---SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch---hhHHHHHhcCCcccc-CC
Confidence 7776 5565543 467777777777764322332 467777777777764 554432 467778888888875 44
Q ss_pred ccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhc
Q 036642 672 KGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCIL 751 (938)
Q Consensus 672 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (938)
..+ .++|+.|++++|.+++ +|..+.
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~---------------------------------------------------- 345 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP---------------------------------------------------- 345 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc----------------------------------------------------
Confidence 433 2678888888888874 554331
Q ss_pred cceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCcccc----CCCCCC
Q 036642 752 NLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS----SLTYLN 827 (938)
Q Consensus 752 ~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~----~l~~L~ 827 (938)
+.|+.|++++|+++ .+|..+. +.|+.|+|++|.++ .+|+.+. .+|+.||+++|+++ .+|..+. .++.+.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 12478999999998 6887664 68999999999999 6787765 37999999999998 5666544 457889
Q ss_pred eEeCcCCcccc
Q 036642 828 HLNLSNNNLTG 838 (938)
Q Consensus 828 ~L~ls~N~l~g 838 (938)
.+++.+|+++.
T Consensus 419 ~L~L~~Npls~ 429 (754)
T PRK15370 419 RIIVEYNPFSE 429 (754)
T ss_pred EEEeeCCCccH
Confidence 99999999974
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.4e-18 Score=190.47 Aligned_cols=160 Identities=26% Similarity=0.234 Sum_probs=78.9
Q ss_pred CcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC------ccchhhhcCCCCCEEEcCCCcccccCCcccCCC
Q 036642 532 LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG------ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSL 605 (938)
Q Consensus 532 L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 605 (938)
|++++++++.+++.....++..+...+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 44455555544433333334444455556666666665541 223344555666666666666654444444433
Q ss_pred CC---CcEEEcccccccc----ccc-ccccC-cCCcEEECCCCccCCCCChhHh---hhcCcccEEeeCCCccccc----
Q 036642 606 IS---LQSLHLRKNNLSG----TIH-SLKNC-TALLTLDVGENEFVENIPTWIG---ERFSRMVVLILRSNKFHSL---- 669 (938)
Q Consensus 606 ~~---L~~L~L~~n~l~~----~~~-~l~~l-~~L~~L~Ls~N~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~---- 669 (938)
.+ |++|++++|++++ .+. .+..+ ++|++|++++|.+++..+..+. ..+++|++|++++|.+++.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 33 6666666666552 111 33444 5566666666665532221111 1334555666665555532
Q ss_pred CCccccCCCccCeeeccccccc
Q 036642 670 LPKGLCDLAFLQIVDLADNNLS 691 (938)
Q Consensus 670 ~~~~l~~l~~L~~L~Ls~N~l~ 691 (938)
++..+..+++|+.|++++|.++
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccC
Confidence 2223334455666666666554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=8.1e-18 Score=184.33 Aligned_cols=107 Identities=24% Similarity=0.228 Sum_probs=50.4
Q ss_pred EECCCCCCCCccCcccccCCCCCCEEEccCCcccC----CCCccccCCCCCCEEECcCCcCCC------ccchhhhcCCC
Q 036642 245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG----PIPEGLQNLTSLKHLLLDSNRFNS------SIPNWLYRFNR 314 (938)
Q Consensus 245 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~ 314 (938)
|+|..+.+++......+..+.+|++|+++++.++. .++..+...+++++++++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 33444444332223333444445555555554432 123333444455555555554431 22334455556
Q ss_pred CCEEEccCCcCCchhhHhhhccCC---CCeeecCCCcCcc
Q 036642 315 LESLGVSNNSLQGRVIRSMASLCN---LRSVMLSCVKLSQ 351 (938)
Q Consensus 315 L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~ 351 (938)
|+.|++++|.+.+..+..+..+.+ |++|++++|++.+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 666666666655444444444443 6666666555553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=9.4e-18 Score=151.23 Aligned_cols=167 Identities=30% Similarity=0.466 Sum_probs=124.9
Q ss_pred CccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCC
Q 036642 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF 191 (938)
Q Consensus 112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~ 191 (938)
.+.++.+++.|-||+|+++ .+|..+..+.+|+.|++++|++. .+|.+++.+++|++|+++-|++..
T Consensus 28 gLf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~----------- 93 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI----------- 93 (264)
T ss_pred cccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-----------
Confidence 3567778888999999998 47888889999999999999988 788888888888888887665431
Q ss_pred CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEE
Q 036642 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD 271 (938)
Q Consensus 192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 271 (938)
.|..|+.++.|++|||++|++....+|..|+.+..|+.|.
T Consensus 94 ----------------------------------------lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 94 ----------------------------------------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred ----------------------------------------CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 2345666666666666666666555677777777777778
Q ss_pred ccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhc
Q 036642 272 LRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMAS 335 (938)
Q Consensus 272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 335 (938)
|++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.+++|++|.+.+|+++.. |..+++
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vl-ppel~~ 194 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVL-PPELAN 194 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeec-Chhhhh
Confidence 8888777 67777888888888888888776 5777788888888888888877643 333443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.8e-17 Score=149.38 Aligned_cols=181 Identities=24% Similarity=0.471 Sum_probs=126.7
Q ss_pred CCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeee
Q 036642 605 LISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVD 684 (938)
Q Consensus 605 l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 684 (938)
+.+++.|.|++|+++..+|.+..+.+|+.|++++|++.. +|..+. .+++|+.|++.-|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhh-hchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 344445555555555444455555555555555555432 555554 5666666666666664 3678888888888888
Q ss_pred cccccccc-ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCc
Q 036642 685 LADNNLSG-EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNN 763 (938)
Q Consensus 685 Ls~N~l~~-~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~ 763 (938)
+++|++.. .+|..|..++.| +.|+|+.|.
T Consensus 109 ltynnl~e~~lpgnff~m~tl--------------------------------------------------ralyl~dnd 138 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTL--------------------------------------------------RALYLGDND 138 (264)
T ss_pred ccccccccccCCcchhHHHHH--------------------------------------------------HHHHhcCCC
Confidence 88888863 556666555554 455678888
Q ss_pred cCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCC---CeEeCcCCcccccC
Q 036642 764 FSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYL---NHLNLSNNNLTGKI 840 (938)
Q Consensus 764 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L---~~L~ls~N~l~g~i 840 (938)
+. .+|.+++++++|+.|.+..|.+- ..|..++.++.|++|.+.+|+++ .+|..++++.-. +++.+.+|++.-+|
T Consensus 139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 87 78999999999999999999998 78999999999999999999998 788888776532 34556677776544
Q ss_pred C
Q 036642 841 P 841 (938)
Q Consensus 841 p 841 (938)
.
T Consensus 216 a 216 (264)
T KOG0617|consen 216 A 216 (264)
T ss_pred H
Confidence 4
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=5.3e-15 Score=173.62 Aligned_cols=116 Identities=38% Similarity=0.690 Sum_probs=103.8
Q ss_pred eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642 754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN 833 (938)
Q Consensus 754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 833 (938)
++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|+.++.+++|+.|||++|+++|.+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCC--CcCCCcCCCCcCCC-CCCCCCCCCCCC
Q 036642 834 NNLTGKIPSS--TQLQSFDASSYAGN-DLCGAPLPRNCS 869 (938)
Q Consensus 834 N~l~g~ip~~--~~~~~~~~~~~~~n-~lc~~~~~~~c~ 869 (938)
|+++|.+|.. ..+.......+.+| .+||.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999964 11223334568899 899987656674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=7.6e-14 Score=163.90 Aligned_cols=149 Identities=32% Similarity=0.456 Sum_probs=120.0
Q ss_pred CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc----cccceeeCC--CC--CcEEEEecCCCCCccCCccCCCCCCcc
Q 036642 33 GCLESERRALLRFKQDLQDPSNRLASWIGYEDCC----AWAGVVCDN--VT--GHIVELNLRNPFTYCDLSQSKANPRSM 104 (938)
Q Consensus 33 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~--~~--~~v~~l~L~~~~~~~~~~~~~~~~~~~ 104 (938)
.+.++|.+||+++|+++.++.. .+|.+ ++|| .|.||.|.. .. .+|+.|+|++ +.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~---------------n~ 429 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN---------------QG 429 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCC---------------CC
Confidence 3567899999999999976532 48976 5554 799999952 22 2589999988 47
Q ss_pred cCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcc
Q 036642 105 LVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLW 184 (938)
Q Consensus 105 ~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~ 184 (938)
+.|.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|+|++|.+....+.
T Consensus 430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred ccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 8899999999999999999999999985 999999999999999999999999999999999999999999988765555
Q ss_pred ccCCC-CCCCEEeCCCC
Q 036642 185 WLPGL-SFLKDLDLSYV 200 (938)
Q Consensus 185 ~~~~l-~~L~~L~Ls~n 200 (938)
.+... .++..+++.+|
T Consensus 509 ~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 509 ALGGRLLHRASFNFTDN 525 (623)
T ss_pred HHhhccccCceEEecCC
Confidence 44432 23344444444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=9.2e-13 Score=141.02 Aligned_cols=193 Identities=27% Similarity=0.363 Sum_probs=113.9
Q ss_pred CcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCC
Q 036642 559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGE 638 (938)
Q Consensus 559 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~ 638 (938)
.-...|++.|++. ++|..+..+..|+.+.+..|.+. .+|..++++..|+.|+|+.|+++-.+..+..|+ |+.|-+++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 3444566666665 45555666666666666666666 566666666666666666666654433444443 55555555
Q ss_pred CccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhh
Q 036642 639 NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQ 718 (938)
Q Consensus 639 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~ 718 (938)
|+++ .+|..++ ..+.|..|+.+.|.+.. +|..++.+.+|+.|.+..|++. .+|+.+..|+
T Consensus 153 Nkl~-~lp~~ig-~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp---------------- 212 (722)
T KOG0532|consen 153 NKLT-SLPEEIG-LLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP---------------- 212 (722)
T ss_pred Cccc-cCCcccc-cchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc----------------
Confidence 5543 2555555 45555555555555543 4555555666666666666555 3444333221
Q ss_pred hhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccc--
Q 036642 719 FLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI-- 796 (938)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~-- 796 (938)
|..||+|+|+++ .||-+|.+|+.|++|-|.+|.+. ..|..+
T Consensus 213 -----------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 213 -----------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred -----------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 356777888877 67878888888888888888777 555544
Q ss_pred -cccCCCCEEECCCCc
Q 036642 797 -GAMRSLESIDFSLNQ 811 (938)
Q Consensus 797 -~~l~~L~~LdLs~N~ 811 (938)
|...-.++|+..-++
T Consensus 256 kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccceeeeeeecchhcc
Confidence 333445566666553
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1.1e-12 Score=140.55 Aligned_cols=195 Identities=26% Similarity=0.412 Sum_probs=138.2
Q ss_pred CCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEe
Q 036642 581 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLI 660 (938)
Q Consensus 581 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~ 660 (938)
+.--...|++.|++. .+|..+..+..|+.+.|..|.+...+..+.++..|+.+||+.|+++. +|..+. .--|+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC--~lpLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH-LPDGLC--DLPLKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc-CChhhh--cCcceeEE
Confidence 444556788999988 78888888889999999999887655588888888888888888764 666665 23477888
Q ss_pred eCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeee
Q 036642 661 LRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVM 740 (938)
Q Consensus 661 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (938)
+++|+++. +|+.++.+..|..||.+.|.+. .+|..++.+.+|
T Consensus 150 ~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl------------------------------------ 191 (722)
T KOG0532|consen 150 VSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL------------------------------------ 191 (722)
T ss_pred EecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH------------------------------------
Confidence 88888764 6667777777777777777776 566666666655
Q ss_pred cCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccc
Q 036642 741 KGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSM 820 (938)
Q Consensus 741 ~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l 820 (938)
+.|.+..|++. .+|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|+|.. -|..+
T Consensus 192 --------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI 253 (722)
T KOG0532|consen 192 --------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQI 253 (722)
T ss_pred --------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence 33445566666 567777754 3667777777777 677777777777777777777763 34433
Q ss_pred ---cCCCCCCeEeCcCCc
Q 036642 821 ---SSLTYLNHLNLSNNN 835 (938)
Q Consensus 821 ---~~l~~L~~L~ls~N~ 835 (938)
+...-.++|+..-++
T Consensus 254 C~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 254 CEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Hhccceeeeeeecchhcc
Confidence 234445666666553
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=6.4e-12 Score=127.40 Aligned_cols=241 Identities=25% Similarity=0.232 Sum_probs=135.8
Q ss_pred ccCCccCCCCCCEEeCCCCCCCCC---cccccccCCCCCcEEecCCC---cCCCCCCcC-------CCCCCcccEEECCC
Q 036642 109 VNPSLLDLKHLSYLDLSYNDFQGV---QIPRFICSMGNLRYLNLSYT---QFVGMIPPQ-------LGNLSNLQYLDLSW 175 (938)
Q Consensus 109 l~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~Ls~n---~l~~~~p~~-------~~~L~~L~~L~Ls~ 175 (938)
+-+.+.....+++++||+|.|... .+...+.+.++|+..++|+- +....+|+. +..+++|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334455667778888888877531 12334556677777777653 222334433 34556788888888
Q ss_pred CcccccCccc----cCCCCCCCEEeCCCCCCCCCcc-----------hhhhhCCCCCCcEEEcCCCCCCCCCc----ccc
Q 036642 176 NFLYVENLWW----LPGLSFLKDLDLSYVNLSKASD-----------WLRVTNTLPSLVKLRLSRCQLHHLPP----LAI 236 (938)
Q Consensus 176 n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~~~l~~L~~L~L~~n~i~~~~~----~~l 236 (938)
|.+....++. +..+..|++|.|.+|.+..... .......-++|+++...+|++...+. ..|
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 8776655543 3456777777777776654311 11223445667777777777665543 344
Q ss_pred cCCCCCCEEECCCCCCCCcc---CcccccCCCCCCEEEccCCcccCC----CCccccCCCCCCEEECcCCcCCCccchhh
Q 036642 237 ANFSTLTTLDLLYNQFDNSF---VPNWVFGLIQLVFLDLRRNNFQGP----IPEGLQNLTSLKHLLLDSNRFNSSIPNWL 309 (938)
Q Consensus 237 ~~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 309 (938)
...+.|+.+.++.|.|.... ....+..+++|++|||.+|.++.. +...+..+++|++|++++|.+.......+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 55567777777777665321 123455666777777777666532 22334555666666666666654333332
Q ss_pred h-----cCCCCCEEEccCCcCCchh----hHhhhccCCCCeeecCCCcC
Q 036642 310 Y-----RFNRLESLGVSNNSLQGRV----IRSMASLCNLRSVMLSCVKL 349 (938)
Q Consensus 310 ~-----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l 349 (938)
. ..++|+++.+.+|.++... ...+...+.|+.|++++|.+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 3456666666666655322 12233445555555555555
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=5.9e-11 Score=133.77 Aligned_cols=199 Identities=30% Similarity=0.483 Sum_probs=108.0
Q ss_pred eeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCC-CCcEEEcccccccccccccccCcCCcEEECCCCc
Q 036642 562 FLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLI-SLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENE 640 (938)
Q Consensus 562 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~ 640 (938)
.++.+.|.+...+. .+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++......+.+++.|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 56777776643322 2344567777777777777 4555555553 7777777777776543456667777777777777
Q ss_pred cCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhh
Q 036642 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFL 720 (938)
Q Consensus 641 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~ 720 (938)
+.. +|.... ..+.|+.|++++|++.. +|........|+++++++|+.. .++..+.++..+
T Consensus 175 l~~-l~~~~~-~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l---------------- 234 (394)
T COG4886 175 LSD-LPKLLS-NLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL---------------- 234 (394)
T ss_pred hhh-hhhhhh-hhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc----------------
Confidence 654 443332 35555666666665554 3333333344555555555322 222223222222
Q ss_pred hccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccC
Q 036642 721 LYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMR 800 (938)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 800 (938)
..+.+++|++. .+|..++.++.++.|++++|.++ .++. ++.+.
T Consensus 235 ----------------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~ 277 (394)
T COG4886 235 ----------------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLT 277 (394)
T ss_pred ----------------------------------cccccCCceee-eccchhccccccceecccccccc-cccc-ccccC
Confidence 23334555554 23555555555666666666655 3333 55555
Q ss_pred CCCEEECCCCcccccCCcc
Q 036642 801 SLESIDFSLNQLSGEIPQS 819 (938)
Q Consensus 801 ~L~~LdLs~N~l~~~ip~~ 819 (938)
+++.||+++|.++...|..
T Consensus 278 ~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 278 NLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccCEEeccCccccccchhh
Confidence 6666666666555544443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=7.6e-11 Score=132.89 Aligned_cols=197 Identities=35% Similarity=0.505 Sum_probs=106.8
Q ss_pred EEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCc-CCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC
Q 036642 586 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCT-ALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN 664 (938)
Q Consensus 586 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n 664 (938)
.++++.|.+... +..+..++.++.|++.+|.++...+.....+ +|+.|++++|++.. +|..+. .++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~-~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLR-NLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhh-ccccccccccCCc
Confidence 455555555322 2223344556666666666665444444443 66666666666543 333333 5666666666666
Q ss_pred cccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcc
Q 036642 665 KFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRA 744 (938)
Q Consensus 665 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (938)
++.. +|...+..+.|+.|++++|+++ .+|........|
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L---------------------------------------- 211 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL---------------------------------------- 211 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh----------------------------------------
Confidence 6654 3333335566666666666665 444433222222
Q ss_pred hhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCC
Q 036642 745 AEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT 824 (938)
Q Consensus 745 ~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 824 (938)
..+++++|++. .++..+.++..+..+.+++|++. .+|..++.+++++.|++++|.++. ++. +..+.
T Consensus 212 ----------~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~ 277 (394)
T COG4886 212 ----------EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLT 277 (394)
T ss_pred ----------hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccC
Confidence 34445555433 35555666666666666666665 335556666666666666666663 232 56666
Q ss_pred CCCeEeCcCCcccccCC
Q 036642 825 YLNHLNLSNNNLTGKIP 841 (938)
Q Consensus 825 ~L~~L~ls~N~l~g~ip 841 (938)
.++.|++++|.++...|
T Consensus 278 ~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 278 NLRELDLSGNSLSNALP 294 (394)
T ss_pred ccCEEeccCccccccch
Confidence 66666666666655444
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.6e-11 Score=127.80 Aligned_cols=213 Identities=27% Similarity=0.260 Sum_probs=93.8
Q ss_pred CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCC--cCCCCCCcccEEECCCCcccccCcccc-CCCCC
Q 036642 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIP--PQLGNLSNLQYLDLSWNFLYVENLWWL-PGLSF 191 (938)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~L~~L~~L~Ls~n~i~~~~~~~~-~~l~~ 191 (938)
+++.|+...|.+..+...........|++++.||||.|-+..-.| .-...|++|+.|+++.|++........ ..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 344455555544444321111233445555555555554432111 122344555555555554432222111 12344
Q ss_pred CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEE
Q 036642 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD 271 (938)
Q Consensus 192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 271 (938)
|+.|.++.|.++ -.++......+|+|+.|+|..|....+.......+..|+.|||++|.+-....-..
T Consensus 199 lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~----------- 266 (505)
T KOG3207|consen 199 LKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK----------- 266 (505)
T ss_pred hheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc-----------
Confidence 444444444444 22223333444444444444443222222233333444444444444433211123
Q ss_pred ccCCcccCCCCccccCCCCCCEEECcCCcCCCc-cchh-----hhcCCCCCEEEccCCcCCch-hhHhhhccCCCCeeec
Q 036642 272 LRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS-IPNW-----LYRFNRLESLGVSNNSLQGR-VIRSMASLCNLRSVML 344 (938)
Q Consensus 272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L 344 (938)
.+.++.|+.|+++.+.+... .|+. ...+++|++|++..|++... ....+..+++|+.|.+
T Consensus 267 -------------~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 267 -------------VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred -------------cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 34455555555555554431 1211 23556777777777766321 1233455666777777
Q ss_pred CCCcCccc
Q 036642 345 SCVKLSQE 352 (938)
Q Consensus 345 ~~n~l~~~ 352 (938)
..|.+..+
T Consensus 334 ~~n~ln~e 341 (505)
T KOG3207|consen 334 TLNYLNKE 341 (505)
T ss_pred cccccccc
Confidence 77777654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=5.9e-11 Score=113.77 Aligned_cols=108 Identities=26% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCCCCCEEeCCCCCCCCCccccccc-CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642 115 DLKHLSYLDLSYNDFQGVQIPRFIC-SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK 193 (938)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 193 (938)
+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+.. +.+..+++|++|++++|+|+.+.......+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 344567777777777643 2233 466777777777777643 2466666777777776666654322122345555
Q ss_pred EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCC
Q 036642 194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQL 228 (938)
Q Consensus 194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i 228 (938)
+|++++|++....++ ..+..+++|+.|++.+|.+
T Consensus 92 ~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 92 ELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GG
T ss_pred EEECcCCcCCChHHh-HHHHcCCCcceeeccCCcc
Confidence 555555555544331 2233344444444444433
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=6.4e-11 Score=120.26 Aligned_cols=255 Identities=22% Similarity=0.213 Sum_probs=138.9
Q ss_pred cccCCCCCcEEecCCCcCCCC----CCcCCCCCCcccEEECCCCcccccC---c-------cccCCCCCCCEEeCCCCCC
Q 036642 137 FICSMGNLRYLNLSYTQFVGM----IPPQLGNLSNLQYLDLSWNFLYVEN---L-------WWLPGLSFLKDLDLSYVNL 202 (938)
Q Consensus 137 ~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~L~~L~~L~Ls~n~i~~~~---~-------~~~~~l~~L~~L~Ls~n~l 202 (938)
.+..+..+++++||+|.+... +...+.+.++|+..++++-...... + .++..+++|+.++||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345677888889998887644 3344566678888887754322111 1 1344556677777777755
Q ss_pred CC--CcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCC
Q 036642 203 SK--ASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGP 280 (938)
Q Consensus 203 ~~--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 280 (938)
.. ++.+...+..+..|++|+|.+|.+.-.....++. .|..|. .......-++|+++...+|++...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------HHhccCCCcceEEEEeeccccccc
Confidence 42 3444445556666666666666654433222111 000000 011122334555555555554421
Q ss_pred ----CCccccCCCCCCEEECcCCcCCC----ccchhhhcCCCCCEEEccCCcCCch----hhHhhhccCCCCeeecCCCc
Q 036642 281 ----IPEGLQNLTSLKHLLLDSNRFNS----SIPNWLYRFNRLESLGVSNNSLQGR----VIRSMASLCNLRSVMLSCVK 348 (938)
Q Consensus 281 ----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~ 348 (938)
+...+...+.|+.+.+..|.+.. .+...+..+++|++|||.+|.++.. +...+..+++|+.+++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 12234445566666666665532 1223455666666666666666532 23445556667777777776
Q ss_pred CccchhhHHHhhhcccccCccEEEccCCcCccc----cccccCCCCCccEEEccCCeec
Q 036642 349 LSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH----LTYKLGQFKNLYYLDLSNNSIV 403 (938)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~ 403 (938)
+.......|...+....++|+.+.+.+|.++.. +.......+.|+.|+|++|.+.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 665544433333333344777777777776632 2223455788888888888883
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6.4e-11 Score=123.46 Aligned_cols=165 Identities=22% Similarity=0.151 Sum_probs=96.9
Q ss_pred CCCCcccEEECCCCcccccCc-cccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCccc-ccCCC
Q 036642 163 GNLSNLQYLDLSWNFLYVENL-WWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA-IANFS 240 (938)
Q Consensus 163 ~~L~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-l~~l~ 240 (938)
+++.+|+...|.++.+..... .....+++++.|||+.|-+............+|+|+.|+++.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 344555555555554443332 2345566666666666666666556666777788888888887765543322 22456
Q ss_pred CCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCcc-chhhhcCCCCCEEE
Q 036642 241 TLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSI-PNWLYRFNRLESLG 319 (938)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~ 319 (938)
+|+.|.+++|.++...+..-...+++|+.|+|..|...........-+..|++|+|++|++.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 77777777777764333334456677777777777533232333344566777777777665321 13345666777777
Q ss_pred ccCCcCCc
Q 036642 320 VSNNSLQG 327 (938)
Q Consensus 320 L~~n~l~~ 327 (938)
++.+.+..
T Consensus 278 ls~tgi~s 285 (505)
T KOG3207|consen 278 LSSTGIAS 285 (505)
T ss_pred ccccCcch
Confidence 77666553
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=5.4e-10 Score=107.14 Aligned_cols=63 Identities=41% Similarity=0.434 Sum_probs=11.7
Q ss_pred cCCCCCcEEecCCCcCCCCCCcCCC-CCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCC
Q 036642 139 CSMGNLRYLNLSYTQFVGMIPPQLG-NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKA 205 (938)
Q Consensus 139 ~~l~~L~~L~Ls~n~l~~~~p~~~~-~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 205 (938)
.+..++++|+|++|.|+.+ +.++ .+.+|++|++++|.|.... .++.++.|++|++++|+++.+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc
Confidence 3555677888888877743 3454 4667777777777665432 344444444444444444443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=3.1e-10 Score=112.26 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=48.3
Q ss_pred CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECC
Q 036642 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG 637 (938)
Q Consensus 558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls 637 (938)
+.++.|++|+|.+.. + +.+..+++|+.||+|+|.++ .+-.+-..+-++++|.|++|.+. .+..+..+-+|..||++
T Consensus 307 Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLS 382 (490)
T ss_pred cceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheecccc
Confidence 444444444444442 1 11444455555555555554 22233334445555555555443 12234444555555555
Q ss_pred CCccCCCC-ChhHhhhcCcccEEeeCCCcccc
Q 036642 638 ENEFVENI-PTWIGERFSRMVVLILRSNKFHS 668 (938)
Q Consensus 638 ~N~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~ 668 (938)
+|++...- -..++ ++|.|+.+.|.+|.+.+
T Consensus 383 ~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 383 SNQIEELDEVNHIG-NLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccchhhHHHhcccc-cccHHHHHhhcCCCccc
Confidence 55543210 01223 45555555566665554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=7.6e-10 Score=109.50 Aligned_cols=205 Identities=23% Similarity=0.218 Sum_probs=108.8
Q ss_pred ccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccC-ccccC
Q 036642 109 VNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVEN-LWWLP 187 (938)
Q Consensus 109 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~-~~~~~ 187 (938)
+|-.+.-+++|+.+.+|++.-.. +-.....-|.|+++...+..++.. | .+-....+....-+.-...... ...+.
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred cccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEecc
Confidence 44556677888888888876542 222222346788888776655522 1 1111112211111111110000 11233
Q ss_pred CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCC
Q 036642 188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL 267 (938)
Q Consensus 188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 267 (938)
..+.|+++|||+|.++.+. ....-.|+++.|++++|.+..+.. +..+++|+.|||++|.++. ...|-..+.++
T Consensus 282 TWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNI 354 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE--CVGWHLKLGNI 354 (490)
T ss_pred hHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHh--hhhhHhhhcCE
Confidence 3456777777777776653 344556777777777777776653 6667777777777776653 13344455566
Q ss_pred CEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCc-cchhhhcCCCCCEEEccCCcCC
Q 036642 268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS-IPNWLYRFNRLESLGVSNNSLQ 326 (938)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 326 (938)
+.|.|+.|.+... ..++++-+|..|++++|++... --..+++++.|+++.|.+|.+.
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6666666655421 3345555556666666555421 1123445555555555555544
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.82 E-value=4.6e-09 Score=75.34 Aligned_cols=39 Identities=51% Similarity=1.031 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhcCC-CCCCCCCCCCCC--CCCccccceeeC
Q 036642 36 ESERRALLRFKQDLQ-DPSNRLASWIGY--EDCCAWAGVVCD 74 (938)
Q Consensus 36 ~~~~~~ll~~k~~~~-~~~~~l~~W~~~--~~~c~w~gv~c~ 74 (938)
++|++||++||+++. +|.+.+.+|+.. ++||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999998 577889999764 799999999995
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=7.6e-10 Score=124.78 Aligned_cols=197 Identities=29% Similarity=0.311 Sum_probs=134.8
Q ss_pred CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD 194 (938)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 194 (938)
.+..++.+++..|.+.. +-..++.+.+|++|++.+|.|... ...+..+++|++|++++|.|+.+ ..+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 55667777788887773 334467778888888888888743 33377788888888888887654 34555666888
Q ss_pred EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc-ccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEcc
Q 036642 195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP-LAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLR 273 (938)
Q Consensus 195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 273 (938)
|++++|.++.+.. +..++.|+.+++++|.+..+.. . ...+.+++.+++.+|.+.. ...+..+..+..+++.
T Consensus 145 L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~---i~~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 145 LNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE---IEGLDLLKKLVLLSLL 216 (414)
T ss_pred heeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc---ccchHHHHHHHHhhcc
Confidence 8888888877643 3447788888888888877765 3 5677788888888887764 4455555666666777
Q ss_pred CCcccCCCCccccCCCC--CCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCc
Q 036642 274 RNNFQGPIPEGLQNLTS--LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG 327 (938)
Q Consensus 274 ~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 327 (938)
.|.++..-+ +..+.. |+.+++++|.+.. .+..+..+..+..+++.+|++..
T Consensus 217 ~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 217 DNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc
Confidence 777764322 222233 7788888887763 33455667777777777777653
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=8.5e-09 Score=81.14 Aligned_cols=60 Identities=43% Similarity=0.596 Sum_probs=37.2
Q ss_pred CCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcc
Q 036642 777 ALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNL 836 (938)
Q Consensus 777 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 836 (938)
+|+.|++++|+++...++.|..+++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666644445666666666666666666655556666666666666666654
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.1e-08 Score=122.84 Aligned_cols=251 Identities=22% Similarity=0.177 Sum_probs=108.5
Q ss_pred CCcEEecCCCc--CCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcE
Q 036642 143 NLRYLNLSYTQ--FVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVK 220 (938)
Q Consensus 143 ~L~~L~Ls~n~--l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~ 220 (938)
+|++|-+..|. +....+..|..++.|++|||++|.-...-|..++.+-+||+|++++..+.. +|..+.++.+|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~---LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH---LPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc---cchHHHHHHhhhe
Confidence 44444444443 222222234445555555555444333344444444444444444444443 2345555556666
Q ss_pred EEcCCCCCCCCCcccccCCCCCCEEECCCCCCC-CccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCC----EEE
Q 036642 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD-NSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLK----HLL 295 (938)
Q Consensus 221 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~ 295 (938)
|++..+.-...++.....+.+|++|.+...... +......+.++.+|+.+....... .+-..+...+.|. .+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence 666655544444445555666666666554311 111122334444444444433222 0001111122221 222
Q ss_pred CcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhc------cCCCCeeecCCCcCccchhhHHHhhhcccccCcc
Q 036642 296 LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMAS------LCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLE 369 (938)
Q Consensus 296 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~ 369 (938)
+.++... ..+..+..+.+|+.|.+.++.+.......... ++++..+....+...... ....++++|+
T Consensus 701 ~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l------~~~~f~~~L~ 773 (889)
T KOG4658|consen 701 IEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL------TWLLFAPHLT 773 (889)
T ss_pred hcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc------chhhccCccc
Confidence 2222211 33445556667777777776664332222111 111222222222111111 1112344777
Q ss_pred EEEccCCcCccccccccCCCCCccEEEccCCeeccc
Q 036642 370 ILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGP 405 (938)
Q Consensus 370 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 405 (938)
.|.+..+.....+.+....+..++.+-+..+.+.+.
T Consensus 774 ~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 774 SLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred EEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 777777766655555555555555544555554443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.7e-08 Score=121.31 Aligned_cols=150 Identities=23% Similarity=0.327 Sum_probs=103.5
Q ss_pred CCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCC--CCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCC
Q 036642 190 SFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ--LHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL 267 (938)
Q Consensus 190 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 267 (938)
...+...+-+|.+..+.. -...++|+.|-+..|. +..+....|..++.|++|||++|.--+. +|..++.+-+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhh
Confidence 345555555555544322 1234578888888875 6666667788888888888888654444 38888888888
Q ss_pred CEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCc--CCchhhHhhhccCCCCeeecC
Q 036642 268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNS--LQGRVIRSMASLCNLRSVMLS 345 (938)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~ 345 (938)
++|++++..+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+.... ........+..+..|+.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 88888888887 788888888888888888877666667777778888888887654 223334445555555555543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2.2e-08 Score=78.78 Aligned_cols=60 Identities=30% Similarity=0.455 Sum_probs=55.2
Q ss_pred ceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcc
Q 036642 753 LVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQL 812 (938)
Q Consensus 753 ~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l 812 (938)
.|+.|++++|+++...+..|.++++|+.|++++|.++...|++|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999965557889999999999999999988889999999999999999986
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=3.8e-09 Score=119.11 Aligned_cols=85 Identities=24% Similarity=0.240 Sum_probs=54.3
Q ss_pred eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccccc---CCcc-ccCCCCCCeE
Q 036642 754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE---IPQS-MSSLTYLNHL 829 (938)
Q Consensus 754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L 829 (938)
++.+++++|.+. .+|..+..+..+..|++++|++...- .+.....+..+..+.|++... .... ......+..+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 466777778777 45566777777888888888776432 244456667777777776532 1121 4455667777
Q ss_pred eCcCCcccccCC
Q 036642 830 NLSNNNLTGKIP 841 (938)
Q Consensus 830 ~ls~N~l~g~ip 841 (938)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 777777766544
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=5.8e-09 Score=103.52 Aligned_cols=183 Identities=25% Similarity=0.212 Sum_probs=102.6
Q ss_pred CCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCc-ccccCcc-ccCCCCCCCEE
Q 036642 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF-LYVENLW-WLPGLSFLKDL 195 (938)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L 195 (938)
.|++||||...|+...+-..+..|.+|+.|.|.++++.+.+...+++-.+|+.|+++.+. ++..... .+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588899998888755555667788889999999888888877888888888888888764 2211111 24556666666
Q ss_pred eCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCC
Q 036642 196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN 275 (938)
Q Consensus 196 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 275 (938)
+++.|.+....-....-.--++|+.|+++++.-. +....+..-...+++|.+|||++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn----------------------l~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN----------------------LQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh----------------------hhhhHHHHHHHhCCceeeeccccc
Confidence 6666655432110111111234444444443210 111111222334556666666654
Q ss_pred c-ccCCCCccccCCCCCCEEECcCCcCCCccchhh---hcCCCCCEEEccCCc
Q 036642 276 N-FQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWL---YRFNRLESLGVSNNS 324 (938)
Q Consensus 276 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~ 324 (938)
. ++...-..+.+++.|++|.++.|.. .+|..+ ...+.|.+|++.++-
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 3 2322233445566666666666643 344433 345667777776653
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2.1e-08 Score=88.16 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=47.8
Q ss_pred eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN 834 (938)
Q Consensus 755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 834 (938)
+.++|++|.++ .+|.++..++.|+.||++.|.+. ..|+.+..|.++..||..+|.+. +||..+-.-+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 44556666666 56666666666666666666666 45555555666666666666655 34433322233333444555
Q ss_pred cccccCCCC
Q 036642 835 NLTGKIPSS 843 (938)
Q Consensus 835 ~l~g~ip~~ 843 (938)
++.+..|.+
T Consensus 157 pl~~~~~~k 165 (177)
T KOG4579|consen 157 PLGDETKKK 165 (177)
T ss_pred cccccCccc
Confidence 666555543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=5.8e-09 Score=115.18 Aligned_cols=181 Identities=27% Similarity=0.219 Sum_probs=108.9
Q ss_pred cCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCc--C-------CCCCCcCCCCCCcccEEECCCCcccc
Q 036642 110 NPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQ--F-------VGMIPPQLGNLSNLQYLDLSWNFLYV 180 (938)
Q Consensus 110 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~--l-------~~~~p~~~~~L~~L~~L~Ls~n~i~~ 180 (938)
|-++..++.||+|.|.++++... -...+--..|++|.-++.- + .|.+-.++.. -+|.+.+.+.|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~W-n~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVW-NKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhh-hhHhhhhcchhhHHh
Confidence 55788999999999999988632 1111111234444332210 0 0111111111 245556666666543
Q ss_pred cCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCccc
Q 036642 181 ENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNW 260 (938)
Q Consensus 181 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 260 (938)
. ...+.-++.|++|+|++|+++++ ..+..+++|++|||+.|.+..++.-....+. |+.|.+++|.++. ...
T Consensus 179 m-D~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t---L~g 249 (1096)
T KOG1859|consen 179 M-DESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT---LRG 249 (1096)
T ss_pred H-HHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh---hhh
Confidence 2 23455566777777777777665 3566677777777777777777665556665 7777777777765 456
Q ss_pred ccCCCCCCEEEccCCcccCCC-CccccCCCCCCEEECcCCcCC
Q 036642 261 VFGLIQLVFLDLRRNNFQGPI-PEGLQNLTSLKHLLLDSNRFN 302 (938)
Q Consensus 261 ~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~ 302 (938)
+.++.+|+.||+++|-+.+.- -..+..+..|+.|+|.+|.+.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 677777788888877665421 122445567777888887764
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=1.2e-08 Score=112.91 Aligned_cols=198 Identities=26% Similarity=0.288 Sum_probs=117.9
Q ss_pred CCCCCEEEcCCCcccccC-CcccCCCCCCcEEEcccccccccccccccCc-CCcEEECCCCcc----------CCCCChh
Q 036642 581 YQNLMILDLSNNKFTGNL-PISLGSLISLQSLHLRKNNLSGTIHSLKNCT-ALLTLDVGENEF----------VENIPTW 648 (938)
Q Consensus 581 l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~-~L~~L~Ls~N~l----------~~~~p~~ 648 (938)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.|++|.+.. ..++..+. .|+.|.- +|.+ .|.+...
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc
Confidence 344444444333322222 6667778999999999999864 22222221 2333321 1211 0111111
Q ss_pred HhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcc
Q 036642 649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPS 728 (938)
Q Consensus 649 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 728 (938)
. ....|...+.+.|++.. ...++.-++.|+.|||++|+++..- .+.
T Consensus 161 ~--~Wn~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr----------------------------- 206 (1096)
T KOG1859|consen 161 P--VWNKLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLR----------------------------- 206 (1096)
T ss_pred h--hhhhHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHH-----------------------------
Confidence 1 12345666666666653 3445555677777777777765210 111
Q ss_pred hhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchh-ccCccCCCEEeCcCccCcccCCccccccCCCCEEEC
Q 036642 729 TAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLE-VTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDF 807 (938)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdL 807 (938)
.++.|+.|||+.|.+. .+|.- ...++ |+.|++++|.++.. ..+.+|.+|+.||+
T Consensus 207 ---------------------~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 207 ---------------------RLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDL 261 (1096)
T ss_pred ---------------------hcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccch
Confidence 1234578899999998 56542 23333 89999999998843 34778899999999
Q ss_pred CCCcccccC-CccccCCCCCCeEeCcCCccccc
Q 036642 808 SLNQLSGEI-PQSMSSLTYLNHLNLSNNNLTGK 839 (938)
Q Consensus 808 s~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ 839 (938)
|+|-|++-- -.-+..|.+|..|+|.+|++.+.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999887641 12244567788899999999874
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=5.4e-08 Score=85.61 Aligned_cols=86 Identities=29% Similarity=0.471 Sum_probs=74.6
Q ss_pred eeEEEeecCccCccCchhccCc-cCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCc
Q 036642 754 VRIIDFSKNNFSGKIPLEVTNL-KALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLS 832 (938)
Q Consensus 754 l~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 832 (938)
|+.++||+|.+. ..|+.|... +.++.|||++|+++ .+|+.+..++.|+.|+++.|++. ..|.-+..|.+|-+|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 477899999999 577777544 58999999999999 89999999999999999999999 578888889999999999
Q ss_pred CCcccccCCCC
Q 036642 833 NNNLTGKIPSS 843 (938)
Q Consensus 833 ~N~l~g~ip~~ 843 (938)
+|... +||..
T Consensus 132 ~na~~-eid~d 141 (177)
T KOG4579|consen 132 ENARA-EIDVD 141 (177)
T ss_pred CCccc-cCcHH
Confidence 98876 67765
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.7e-08 Score=98.90 Aligned_cols=181 Identities=24% Similarity=0.214 Sum_probs=130.1
Q ss_pred CcccEEECCCCcccccCcc-ccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCC-CCCCCc-ccccCCCCC
Q 036642 166 SNLQYLDLSWNFLYVENLW-WLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ-LHHLPP-LAIANFSTL 242 (938)
Q Consensus 166 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~l~~l~~L 242 (938)
+.||+|||+...|+..... .+.++.+|+.|.+.++++.+ ++...+.+-.+|+.|+++.+. ++.... -.+.+++.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 3588888888776644333 46788899999999888876 456778888999999999874 443322 346789999
Q ss_pred CEEECCCCCCCCccCcccccC-CCCCCEEEccCCcc---cCCCCccccCCCCCCEEECcCCc-CCCccchhhhcCCCCCE
Q 036642 243 TTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLRRNNF---QGPIPEGLQNLTSLKHLLLDSNR-FNSSIPNWLYRFNRLES 317 (938)
Q Consensus 243 ~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~ 317 (938)
+.|+++++.+....+...+.. -++|+.|+|+++.- ...+..-...+++|.+|||++|. ++...-..|.+++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 999999998876443333333 25789999998752 11222334678999999999875 34344456778999999
Q ss_pred EEccCCcCCchhhHh---hhccCCCCeeecCCCcCc
Q 036642 318 LGVSNNSLQGRVIRS---MASLCNLRSVMLSCVKLS 350 (938)
Q Consensus 318 L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~ 350 (938)
|.++.|.. .+|.. +...+.|.+|+..++--.
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence 99999963 44544 567789999999877544
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.1e-06 Score=87.77 Aligned_cols=111 Identities=21% Similarity=0.131 Sum_probs=75.6
Q ss_pred cccEEECCCCcccccCcc-cc-CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCE
Q 036642 167 NLQYLDLSWNFLYVENLW-WL-PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTT 244 (938)
Q Consensus 167 ~L~~L~Ls~n~i~~~~~~-~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 244 (938)
.++.|.+.++.|..+... .| ...+.++.+||.+|.++...++...+.++|.|+.|+++.|++...+...-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 344444444444433222 22 2356777788888888887777778888888899998888887654433245678888
Q ss_pred EECCCCCCCCccCcccccCCCCCCEEEccCCcc
Q 036642 245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277 (938)
Q Consensus 245 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 277 (938)
|-|.+..+........+..++.++.|.++.|.+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 888888776655566677788888888887744
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=1.6e-06 Score=85.41 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=20.8
Q ss_pred CCCcccEEECCCCcccccCcccc----CCCCCCCEEeCCCC
Q 036642 164 NLSNLQYLDLSWNFLYVENLWWL----PGLSFLKDLDLSYV 200 (938)
Q Consensus 164 ~L~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~Ls~n 200 (938)
-+..++.+|||+|.|......++ ++-.+|+..+++.-
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ 68 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA 68 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence 35667777777777665544432 33445555555443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=5.5e-07 Score=88.55 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=74.7
Q ss_pred CCCCCCcEEEcCCCCCCCCCcc----cccCCCCCCEEECCCCCCCCccC----cccccCCCCCCEEEccCCcccCC----
Q 036642 213 NTLPSLVKLRLSRCQLHHLPPL----AIANFSTLTTLDLLYNQFDNSFV----PNWVFGLIQLVFLDLRRNNFQGP---- 280 (938)
Q Consensus 213 ~~l~~L~~L~L~~n~i~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~---- 280 (938)
..-|.|+......|++...+.. .+..-..|+++.+..|.|.-..+ -..++.+.+|+.|||..|.++-.
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 3445666666666666544331 22222566677777776652210 11234566777777777776532
Q ss_pred CCccccCCCCCCEEECcCCcCCCccchhhh------cCCCCCEEEccCCcCCchhhHh-----h--hccCCCCeeecCCC
Q 036642 281 IPEGLQNLTSLKHLLLDSNRFNSSIPNWLY------RFNRLESLGVSNNSLQGRVIRS-----M--ASLCNLRSVMLSCV 347 (938)
Q Consensus 281 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~------~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~L~~n 347 (938)
+...+...+.|++|.+.+|-++......+. ..++|..|...+|.+.+.+... + ..++-|..+.+.+|
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 223445566678888887777654433321 3467777777777655433211 1 23444445555555
Q ss_pred cCc
Q 036642 348 KLS 350 (938)
Q Consensus 348 ~l~ 350 (938)
.+.
T Consensus 314 r~~ 316 (388)
T COG5238 314 RIK 316 (388)
T ss_pred cch
Confidence 544
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=1.3e-06 Score=87.22 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=26.2
Q ss_pred CCCCCEEECCCCCCCCcc-CcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCC
Q 036642 239 FSTLTTLDLLYNQFDNSF-VPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN 299 (938)
Q Consensus 239 l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 299 (938)
++.++.+||.+|.++.-. +..-+.+++.|++|+++.|++...+...-....+|+.|-|.+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 345555555555554311 0112234555555555555544332211123344444444443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1.6e-05 Score=75.39 Aligned_cols=125 Identities=20% Similarity=0.163 Sum_probs=74.6
Q ss_pred CCEEeCCCCCCCCCccccccc-CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeC
Q 036642 119 LSYLDLSYNDFQGVQIPRFIC-SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL 197 (938)
Q Consensus 119 L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 197 (938)
=+.+||.+.++..+ .. ++ -+.+...+||++|.+... ..|..++.|.+|.+++|+|+.+.+..-..+++|+.|.|
T Consensus 21 e~e~~LR~lkip~i--en-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI--EN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred ccccccccccccch--hh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 35566666655422 11 11 133566778888877633 34677788888888888888777776666777777777
Q ss_pred CCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc---ccccCCCCCCEEECCC
Q 036642 198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP---LAIANFSTLTTLDLLY 249 (938)
Q Consensus 198 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~l~~l~~L~~L~L~~ 249 (938)
.+|++..+.++ ..+..+|+|+.|.+-+|.++.... -.+..+++|++||...
T Consensus 96 tnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 96 TNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777665442 334455666666666665554332 2334444444444443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=5.2e-05 Score=82.00 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=51.4
Q ss_pred cCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccC
Q 036642 602 LGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQ 681 (938)
Q Consensus 602 ~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 681 (938)
+..+.+++.|++++|.++..+ .-..+|++|.++++.-...+|..+ .++|+.|++++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------ccc
Confidence 335688999999999877543 233468999998876656677644 25788888888833333443 466
Q ss_pred eeecccccc
Q 036642 682 IVDLADNNL 690 (938)
Q Consensus 682 ~L~Ls~N~l 690 (938)
.|+++++..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 677766554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.2e-05 Score=56.31 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=14.1
Q ss_pred CCEEeCcCccCcccCCccccccCCCCEEECCCCccc
Q 036642 778 LQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLS 813 (938)
Q Consensus 778 L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~ 813 (938)
|++|++++|+|+ .+|+.++++++|+.||+++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.0001 Score=79.79 Aligned_cols=55 Identities=11% Similarity=0.245 Sum_probs=26.2
Q ss_pred CCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCc
Q 036642 412 HLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471 (938)
Q Consensus 412 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n 471 (938)
.+.+++.|++++|.++.+| .-+.+|++|.+++|.-...+|..+ .++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3455666666666655554 122345555555544333334322 134455555544
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=1.6e-05 Score=93.56 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCcccEEECCCCcccccC-ccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCC-CCcccccCCCCC
Q 036642 165 LSNLQYLDLSWNFLYVEN-LWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH-LPPLAIANFSTL 242 (938)
Q Consensus 165 L~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L 242 (938)
||.|++|.+++-.+...+ .....++++|+.||+|+.+++.+ ..++.+++|+.|.+.+=.+.. ..-..+.++++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 455555555443332222 12234455555555555555543 344555555555555544443 122344556666
Q ss_pred CEEECCCCCCCCcc--C---cccccCCCCCCEEEccCCcccCC
Q 036642 243 TTLDLLYNQFDNSF--V---PNWVFGLIQLVFLDLRRNNFQGP 280 (938)
Q Consensus 243 ~~L~L~~n~l~~~~--~---~~~~~~l~~L~~L~L~~n~l~~~ 280 (938)
++||+|........ + .+.-..+++|+.||.|++.+...
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 66666655433211 0 11122466777777776666543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.1e-05 Score=54.91 Aligned_cols=36 Identities=36% Similarity=0.592 Sum_probs=32.2
Q ss_pred ceeEEEeecCccCccCchhccCccCCCEEeCcCccCc
Q 036642 753 LVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT 789 (938)
Q Consensus 753 ~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 789 (938)
.|+.|++++|+++ .+|.++++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5789999999999 68889999999999999999998
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=0.00011 Score=69.81 Aligned_cols=67 Identities=22% Similarity=0.178 Sum_probs=36.8
Q ss_pred hCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCccc
Q 036642 212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQ 278 (938)
Q Consensus 212 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 278 (938)
|..++.|..|.+++|+|+.+.+.--..+++|+.|.|.+|.+....-...+..+++|++|.+-+|..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 3345555566666666666655555555666666666666654332334445555555555555443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=4.9e-05 Score=89.53 Aligned_cols=141 Identities=21% Similarity=0.255 Sum_probs=66.4
Q ss_pred CcccEEECCCCcccc-cCcccc-CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCC
Q 036642 166 SNLQYLDLSWNFLYV-ENLWWL-PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLT 243 (938)
Q Consensus 166 ~~L~~L~Ls~n~i~~-~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 243 (938)
.+|++||+++..... ..+..+ ..+|.|++|.+++-.+... ++.....++|+|..||+++.+++.+ ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 356666665543211 111112 2355555555555444332 1334444555555555555555554 3455555555
Q ss_pred EEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCcc------chhhhcCCCCCE
Q 036642 244 TLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSI------PNWLYRFNRLES 317 (938)
Q Consensus 244 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~ 317 (938)
+|.+.+-.+........+++ +++|+.||+|........ -+.-..+|+|+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~------------------------L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrf 254 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN------------------------LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRF 254 (699)
T ss_pred HHhccCCCCCchhhHHHHhc------------------------ccCCCeeeccccccccchHHHHHHHHhcccCccccE
Confidence 55555444433211233444 445555555443332111 011123667777
Q ss_pred EEccCCcCCchhhHhh
Q 036642 318 LGVSNNSLQGRVIRSM 333 (938)
Q Consensus 318 L~L~~n~l~~~~~~~l 333 (938)
||.++..+.....+.+
T Consensus 255 LDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 255 LDCSGTDINEEILEEL 270 (699)
T ss_pred EecCCcchhHHHHHHH
Confidence 7777777766555444
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=5.9e-05 Score=75.01 Aligned_cols=115 Identities=26% Similarity=0.230 Sum_probs=74.4
Q ss_pred CccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCC--cCCCCCCcCCCCCCcccEEECCCCccccc-C
Q 036642 106 VGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYT--QFVGMIPPQLGNLSNLQYLDLSWNFLYVE-N 182 (938)
Q Consensus 106 ~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~-~ 182 (938)
.|.+..-.-.+..|+.|++.+..++.. ..+-.+++|++|.+|.| ++.+.++....++++|++|++++|+|... .
T Consensus 32 ~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 32 AGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred CCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence 344444445556667777766666532 22446788999999999 66766666667779999999999988742 3
Q ss_pred ccccCCCCCCCEEeCCCCCCCCCcchh-hhhCCCCCCcEEEc
Q 036642 183 LWWLPGLSFLKDLDLSYVNLSKASDWL-RVTNTLPSLVKLRL 223 (938)
Q Consensus 183 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~l~~L~~L~L 223 (938)
...++.+.+|..|++.+|..+...+.- ..|.-+++|+.|+-
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 344566677777777777766653322 23444555555543
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.30 E-value=6.7e-06 Score=86.27 Aligned_cols=231 Identities=20% Similarity=0.106 Sum_probs=115.0
Q ss_pred CCCCEEeCCCCCCCCC-cccccccCCCCCcEEecCCCc-CCCCCCcCC-CCCCcccEEECCCCc-ccccCcc-ccCCCCC
Q 036642 117 KHLSYLDLSYNDFQGV-QIPRFICSMGNLRYLNLSYTQ-FVGMIPPQL-GNLSNLQYLDLSWNF-LYVENLW-WLPGLSF 191 (938)
Q Consensus 117 ~~L~~L~Ls~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~-~~L~~L~~L~Ls~n~-i~~~~~~-~~~~l~~ 191 (938)
..||.|.++++.=.+. ++-.+..+++++++|++.++. +++..-.++ ..+++|++|++..|. ++..... .-..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3567777777643322 233445677788888777775 222111122 356777777777642 3333323 2345677
Q ss_pred CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccc----cCCCCCCEEECCCCC-CCCccCcccccCCCC
Q 036642 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI----ANFSTLTTLDLLYNQ-FDNSFVPNWVFGLIQ 266 (938)
Q Consensus 192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l----~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~ 266 (938)
|++++++.+.--.-..+-....++..++.+.+.+|.=. ....+ ..+..+.++++.++. +++..+...-..+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 77777777643222223334455555666655544211 11111 233444555544442 332211122234566
Q ss_pred CCEEEccCCcccC-CCCccc-cCCCCCCEEECcCCc-CCCccchhhh-cCCCCCEEEccCCcCCc--hhhHhhhccCCCC
Q 036642 267 LVFLDLRRNNFQG-PIPEGL-QNLTSLKHLLLDSNR-FNSSIPNWLY-RFNRLESLGVSNNSLQG--RVIRSMASLCNLR 340 (938)
Q Consensus 267 L~~L~L~~n~l~~-~~p~~l-~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~ 340 (938)
|++|+.+++...+ ..-..+ .+..+|+.|.++.++ ++..--..++ +.+.|+.+++.++.... .+...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 7777777665322 111122 345677777777765 2222222222 45667777777664321 1222223566677
Q ss_pred eeecCCCcC
Q 036642 341 SVMLSCVKL 349 (938)
Q Consensus 341 ~L~L~~n~l 349 (938)
.+.++++..
T Consensus 376 ~lslshce~ 384 (483)
T KOG4341|consen 376 VLSLSHCEL 384 (483)
T ss_pred cCChhhhhh
Confidence 777766644
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.19 E-value=4.6e-05 Score=80.14 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=40.5
Q ss_pred ccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcC-cccccccc-CCCCCccEEEccCCeecc--cccccc
Q 036642 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSV-SGHLTYKL-GQFKNLYYLDLSNNSIVG--PIPFSL 410 (938)
Q Consensus 335 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~l-~~l~~L~~L~Ls~n~l~~--~~~~~l 410 (938)
.+..|+.++.+++...+..+- ..++.-..+|+.+.+..++. +......+ .+++.|+.+++..+.... .+...-
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l---~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVL---WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhhHhhhhcccCCCCCchHHH---HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 345566666665544222111 13333334666666666642 11111111 345666666666654431 111222
Q ss_pred cCCCCCcEEEccCcc
Q 036642 411 GHLSTLQFIDLSYNE 425 (938)
Q Consensus 411 ~~l~~L~~L~Ls~n~ 425 (938)
.+++.|+.+.++++.
T Consensus 369 ~~C~~lr~lslshce 383 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCE 383 (483)
T ss_pred cCCchhccCChhhhh
Confidence 345666666666554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.98 E-value=0.0017 Score=60.02 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=12.5
Q ss_pred hCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECC
Q 036642 212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLL 248 (938)
Q Consensus 212 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~ 248 (938)
+..+++++.+.+.+ .+..+....|..+++|+.+++.
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred eecccccccccccc-cccccccccccccccccccccC
Confidence 33333444444432 3333333344444444444443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00048 Score=68.72 Aligned_cols=93 Identities=23% Similarity=0.191 Sum_probs=55.3
Q ss_pred cccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCC--cccccCccccCCCCCCCEEeCCCCCCCCCcchhhhh
Q 036642 135 PRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWN--FLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVT 212 (938)
Q Consensus 135 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 212 (938)
......+..|+.|++.+..++.. ..+-.|++|+.|+++.| ++..........+++|+++++++|++..+.. ...+
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl 112 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPL 112 (260)
T ss_pred ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchh
Confidence 33344556777777777776633 34666778888888887 4544444444555777777777776665322 2334
Q ss_pred CCCCCCcEEEcCCCCCCC
Q 036642 213 NTLPSLVKLRLSRCQLHH 230 (938)
Q Consensus 213 ~~l~~L~~L~L~~n~i~~ 230 (938)
..+.+|..|++.+|..+.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 445555556665555444
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.002 Score=59.52 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=26.2
Q ss_pred hhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642 211 VTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274 (938)
Q Consensus 211 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 274 (938)
.|..+++|+.+.+.++ +..+....|.++++|+.+.+.+ .+.... ...+..+++|+.+++..
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~-~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG-DNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTTTT-TTECEEEETT
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccc-cccccccccccccccCc
Confidence 3444555555555543 5555555666666666666644 221111 22334455555555543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00044 Score=68.94 Aligned_cols=100 Identities=27% Similarity=0.196 Sum_probs=69.0
Q ss_pred CCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcEE
Q 036642 557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTL 634 (938)
Q Consensus 557 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L 634 (938)
+.+.+.|++.+|.++.+ .....++.|++|.||-|+|+..-| +..|++|+.|+|+.|.|...-. -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45667777788777742 124567888888888888885543 6678888888888888875433 67888888888
Q ss_pred ECCCCccCCCCChhH----hhhcCcccEEe
Q 036642 635 DVGENEFVENIPTWI----GERFSRMVVLI 660 (938)
Q Consensus 635 ~Ls~N~l~~~~p~~~----~~~l~~L~~L~ 660 (938)
.|..|+-.|.-+... ..-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888777655432 22455555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.00039 Score=69.32 Aligned_cols=79 Identities=28% Similarity=0.244 Sum_probs=37.7
Q ss_pred CCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCC-CccccCCCCCCEEECcCCcCCCccch-----hhhc
Q 036642 238 NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPI-PEGLQNLTSLKHLLLDSNRFNSSIPN-----WLYR 311 (938)
Q Consensus 238 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~-----~l~~ 311 (938)
+++.|++|.|+-|+|+. ...+..|++|++|.|..|.|.... -.-+.++++|+.|.|..|.-.|.-+. .+.-
T Consensus 39 kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 33444444444444433 333444444555555544443210 12234566666666666655544333 2445
Q ss_pred CCCCCEEE
Q 036642 312 FNRLESLG 319 (938)
Q Consensus 312 l~~L~~L~ 319 (938)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 66676664
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.76 E-value=0.0019 Score=75.09 Aligned_cols=113 Identities=26% Similarity=0.197 Sum_probs=58.3
Q ss_pred CCCCCEEeCCCC-CCCCCcccccccCCCCCcEEecCCC-cCCCCCC----cCCCCCCcccEEECCCCc-ccccCccccCC
Q 036642 116 LKHLSYLDLSYN-DFQGVQIPRFICSMGNLRYLNLSYT-QFVGMIP----PQLGNLSNLQYLDLSWNF-LYVENLWWLPG 188 (938)
Q Consensus 116 l~~L~~L~Ls~n-~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~~~~L~~L~~L~Ls~n~-i~~~~~~~~~~ 188 (938)
.+.|+.|.+.++ .+....+-.....+++|+.|+++++ ......+ .....+.+|+.|+++++. ++......+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666665 2332112234456677777777652 1111111 223445666777776665 44444444433
Q ss_pred -CCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCC
Q 036642 189 -LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQL 228 (938)
Q Consensus 189 -l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i 228 (938)
+++|++|.+.++.-.....+......++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5666666655554212223344455566666666666544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0046 Score=36.78 Aligned_cols=19 Identities=53% Similarity=0.719 Sum_probs=9.7
Q ss_pred CCEEECCCCcccccCCcccc
Q 036642 802 LESIDFSLNQLSGEIPQSMS 821 (938)
Q Consensus 802 L~~LdLs~N~l~~~ip~~l~ 821 (938)
|++|||++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.31 E-value=0.0022 Score=74.59 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=6.3
Q ss_pred CCCCCEEECcCCc
Q 036642 288 LTSLKHLLLDSNR 300 (938)
Q Consensus 288 l~~L~~L~L~~n~ 300 (938)
+++|++|+++++.
T Consensus 294 ~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 294 CPSLRELDLSGCH 306 (482)
T ss_pred cCcccEEeeecCc
Confidence 4445555555443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.10 E-value=0.0071 Score=35.98 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=9.0
Q ss_pred eeEEEeecCccCccCchhcc
Q 036642 754 VRIIDFSKNNFSGKIPLEVT 773 (938)
Q Consensus 754 l~~L~Ls~N~l~g~ip~~l~ 773 (938)
|+.|||++|+++ .||++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344555555554 4444443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.47 E-value=0.00061 Score=76.97 Aligned_cols=184 Identities=23% Similarity=0.223 Sum_probs=90.4
Q ss_pred ccEEecccccccccCC-----CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccC-CCcc
Q 036642 488 IYVLDLSFNQIHGQIP-----NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHEL-KKLQ 561 (938)
Q Consensus 488 L~~L~Ls~n~l~~~~~-----~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l-~~L~ 561 (938)
+..+.+.+|.+..... .+.....|+.|++++|.+. +.....++..+... ..++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~---------------------~~g~~~l~~~l~~~~~~l~ 147 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG---------------------DEGARLLCEGLRLPQCLLQ 147 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc---------------------cHhHHHHHhhcccchHHHH
Confidence 6667777776654322 2344455555555555554 22222233333332 3344
Q ss_pred eeeccCccCCCc----cchhhhcCCCCCEEEcCCCcccc----cCCcc----cCCCCCCcEEEccccccccc----cc-c
Q 036642 562 FLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFTG----NLPIS----LGSLISLQSLHLRKNNLSGT----IH-S 624 (938)
Q Consensus 562 ~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~----~~~l~~L~~L~L~~n~l~~~----~~-~ 624 (938)
+|++..|.+++. +...+.....++.++++.|.+.. .++.. +....++++|++.+|.++.. +. .
T Consensus 148 ~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~ 227 (478)
T KOG4308|consen 148 TLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV 227 (478)
T ss_pred HHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence 444444444432 22333334455555555554420 11112 22355666777777665531 11 3
Q ss_pred cccCcC-CcEEECCCCccCCCCChhHhh---hc-CcccEEeeCCCcccccCC----ccccCCCccCeeecccccccc
Q 036642 625 LKNCTA-LLTLDVGENEFVENIPTWIGE---RF-SRMVVLILRSNKFHSLLP----KGLCDLAFLQIVDLADNNLSG 692 (938)
Q Consensus 625 l~~l~~-L~~L~Ls~N~l~~~~p~~~~~---~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~N~l~~ 692 (938)
+...++ +.++++..|.+.+..-..+.. .+ ..++.++++.|+++..-. ..+..++.++.+.+++|.+..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 444444 566777777654331111111 12 345677777777765433 334456677777777777753
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.32 E-value=0.00094 Score=75.45 Aligned_cols=61 Identities=34% Similarity=0.340 Sum_probs=32.5
Q ss_pred cceeeccCccCCCc----cchhhhcC-CCCCEEEcCCCcccccC----CcccCCCCCCcEEEcccccccc
Q 036642 560 LQFLYLRGNFLQGE----LTDCWMNY-QNLMILDLSNNKFTGNL----PISLGSLISLQSLHLRKNNLSG 620 (938)
Q Consensus 560 L~~L~ls~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~ 620 (938)
+..+++..|++.+. ..+.+..+ ..+++++++.|.++..- +..+..++.++.+.++.|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44455555554422 22233333 45566666666665322 2334456677777777777654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.63 E-value=0.012 Score=57.49 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=69.7
Q ss_pred ceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCc
Q 036642 753 LVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLS 832 (938)
Q Consensus 753 ~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 832 (938)
..+.||++.|++. ..-..+.-++.|..|+++.|++. ..|+.++++..+..+++..|..+ ..|-++..++.++++++-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4478999999887 45667777888888999999998 78888999999999999888888 678999999999999999
Q ss_pred CCccc
Q 036642 833 NNNLT 837 (938)
Q Consensus 833 ~N~l~ 837 (938)
.|+|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88865
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.26 E-value=0.2 Score=27.52 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=3.4
Q ss_pred CCEEECCCCcc
Q 036642 802 LESIDFSLNQL 812 (938)
Q Consensus 802 L~~LdLs~N~l 812 (938)
|+.|||++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.84 E-value=0.088 Score=50.77 Aligned_cols=81 Identities=25% Similarity=0.261 Sum_probs=35.0
Q ss_pred ccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCC-CCCCCCcccccCCCCCCEEE
Q 036642 168 LQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRC-QLHHLPPLAIANFSTLTTLD 246 (938)
Q Consensus 168 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~ 246 (938)
++.+|-++..|..+....+.+++.++.|.+.+|.--+...+-..-+-.++|+.|++++| +|+...-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44444444444444444444444444444444422211111111123355666666655 34444444444555555544
Q ss_pred CC
Q 036642 247 LL 248 (938)
Q Consensus 247 L~ 248 (938)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.04 E-value=0.18 Score=48.74 Aligned_cols=83 Identities=22% Similarity=0.222 Sum_probs=47.6
Q ss_pred CCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCC-cCccccccccCCCCC
Q 036642 313 NRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGS-SVSGHLTYKLGQFKN 391 (938)
Q Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~ 391 (938)
..++.+|.++..|.....+.+..++.++.|.+.+|+--+..--. .++...++|+.|++++| +|+...-..+..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~---~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE---RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHH---HhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 45677888888887777777888888888888777554332110 22333345666666554 233333333444444
Q ss_pred ccEEEcc
Q 036642 392 LYYLDLS 398 (938)
Q Consensus 392 L~~L~Ls 398 (938)
|+.|.++
T Consensus 178 Lr~L~l~ 184 (221)
T KOG3864|consen 178 LRRLHLY 184 (221)
T ss_pred hHHHHhc
Confidence 5444444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.43 E-value=0.74 Score=28.50 Aligned_cols=21 Identities=52% Similarity=0.708 Sum_probs=12.3
Q ss_pred CCCcEEEcCCCCCCCCCcccc
Q 036642 216 PSLVKLRLSRCQLHHLPPLAI 236 (938)
Q Consensus 216 ~~L~~L~L~~n~i~~~~~~~l 236 (938)
++|+.|+|++|+++.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666666655444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.43 E-value=0.74 Score=28.50 Aligned_cols=21 Identities=52% Similarity=0.708 Sum_probs=12.3
Q ss_pred CCCcEEEcCCCCCCCCCcccc
Q 036642 216 PSLVKLRLSRCQLHHLPPLAI 236 (938)
Q Consensus 216 ~~L~~L~L~~n~i~~~~~~~l 236 (938)
++|+.|+|++|+++.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666666655444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.75 E-value=0.022 Score=55.73 Aligned_cols=94 Identities=21% Similarity=0.224 Sum_probs=59.5
Q ss_pred CCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchh
Q 036642 229 HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNW 308 (938)
Q Consensus 229 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 308 (938)
+.++...+......+.||++.|++.. ....+.-++.|..|+++.|.+. ..|..+.....++.+++..|..+ ..|.+
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s 106 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS 106 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence 34444455666677777777776643 2334455566777777777665 56666666666677777666664 46666
Q ss_pred hhcCCCCCEEEccCCcCC
Q 036642 309 LYRFNRLESLGVSNNSLQ 326 (938)
Q Consensus 309 l~~l~~L~~L~L~~n~l~ 326 (938)
++..++++++++.++.+.
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 777777777776666543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.30 E-value=0.88 Score=28.16 Aligned_cols=14 Identities=50% Similarity=0.619 Sum_probs=7.0
Q ss_pred CCCCEEECCCCccc
Q 036642 800 RSLESIDFSLNQLS 813 (938)
Q Consensus 800 ~~L~~LdLs~N~l~ 813 (938)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.30 E-value=0.88 Score=28.16 Aligned_cols=14 Identities=50% Similarity=0.619 Sum_probs=7.0
Q ss_pred CCCCEEECCCCccc
Q 036642 800 RSLESIDFSLNQLS 813 (938)
Q Consensus 800 ~~L~~LdLs~N~l~ 813 (938)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.58 E-value=0.98 Score=27.33 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=8.9
Q ss_pred CCCCEEEccCCcCCchhhHh
Q 036642 313 NRLESLGVSNNSLQGRVIRS 332 (938)
Q Consensus 313 ~~L~~L~L~~n~l~~~~~~~ 332 (938)
++|++|++++|.+++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34555555555555444433
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=78.85 E-value=16 Score=40.46 Aligned_cols=59 Identities=29% Similarity=0.251 Sum_probs=31.3
Q ss_pred cceeeccCccCCCccchh---hhcCCCCCEEEcCCCcccc----cCCcccCCCCCCcEEEcccccc
Q 036642 560 LQFLYLRGNFLQGELTDC---WMNYQNLMILDLSNNKFTG----NLPISLGSLISLQSLHLRKNNL 618 (938)
Q Consensus 560 L~~L~ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l 618 (938)
+..+.++.|......... ...-+.+..|++++|.... .+|.....-..++....+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 555666666655332222 2334567777777776542 3444444445556555555544
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.23 E-value=0.8 Score=27.72 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=10.6
Q ss_pred CccCeeeccccccccccchh
Q 036642 678 AFLQIVDLADNNLSGEVPRC 697 (938)
Q Consensus 678 ~~L~~L~Ls~N~l~~~~p~~ 697 (938)
++|+.|+|++|++++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666777777666544433
No 88
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=73.86 E-value=1.2 Score=40.91 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=21.8
Q ss_pred eeeehhHHHHHHHHHHHHhhhhcccccchhhhhhhccc--ceEEEEEeeecC
Q 036642 889 LYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVG--DRIVFVNIRTDW 938 (938)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 938 (938)
+++++++|+.+.+++.+++++|..+.|++-..|.+.-. ..+|...+-.+|
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGkvvtay~~n~~~~~ 101 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGKVVTAYRSNKLTKW 101 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecccCccccCCCcEEEEEcCchHHHH
Confidence 34444444433333333444443333333356665333 345555544444
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.29 E-value=3.4 Score=25.70 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=10.2
Q ss_pred cCCCCEEECCCCccc
Q 036642 799 MRSLESIDFSLNQLS 813 (938)
Q Consensus 799 l~~L~~LdLs~N~l~ 813 (938)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.19 E-value=4 Score=25.29 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=6.4
Q ss_pred CCCEEeCcCccCc
Q 036642 777 ALQSFNLSNNFFT 789 (938)
Q Consensus 777 ~L~~L~Ls~N~l~ 789 (938)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555554
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.08 E-value=71 Score=35.62 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=11.6
Q ss_pred CCCcEEecCCCcCCCCCCcCC
Q 036642 142 GNLRYLNLSYTQFVGMIPPQL 162 (938)
Q Consensus 142 ~~L~~L~Ls~n~l~~~~p~~~ 162 (938)
+.+++++++.|.+....|..+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 345666666666655544433
No 92
>PF15102 TMEM154: TMEM154 protein family
Probab=54.97 E-value=10 Score=34.72 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=16.0
Q ss_pred eeeeehh-HHHHHHHHHHHHhhhhcccccch
Q 036642 888 WLYVSIA-LGFMGGFWCLIGPLLASRRWRYK 917 (938)
Q Consensus 888 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 917 (938)
.+++.+. +.+++.++++++++++.||||.+
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 3444433 33444444555566667778764
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.93 E-value=11 Score=23.76 Aligned_cols=14 Identities=50% Similarity=0.714 Sum_probs=7.4
Q ss_pred CCcEEEccCCcccc
Q 036642 531 NLIELDFSNNSISG 544 (938)
Q Consensus 531 ~L~~L~ls~n~l~~ 544 (938)
+|++|++++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555555555543
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.23 E-value=10 Score=42.71 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=7.9
Q ss_pred CCCcceeeccCccCC
Q 036642 557 LKKLQFLYLRGNFLQ 571 (938)
Q Consensus 557 l~~L~~L~ls~n~l~ 571 (938)
.+.+..+.+++|++.
T Consensus 217 ~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY 231 (585)
T ss_pred Ccceeeeecccchhh
Confidence 344555555555543
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=46.83 E-value=11 Score=51.04 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=25.6
Q ss_pred eCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642 782 NLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE 815 (938)
Q Consensus 782 ~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 815 (938)
||++|+|+..-+..|..+++|+.|+|++|++.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5778888866666777778888888888877764
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.70 E-value=13 Score=42.07 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=19.7
Q ss_pred CCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCC
Q 036642 189 LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRC 226 (938)
Q Consensus 189 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n 226 (938)
.+.+..+.|++|++..+..+......-|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44455555566655555444444444455555555555
No 97
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=38.91 E-value=23 Score=34.72 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=17.1
Q ss_pred ccceeeeehhHHHHHHHHHHHHhhhhc
Q 036642 885 LDYWLYVSIALGFMGGFWCLIGPLLAS 911 (938)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (938)
.+.++++++++|.++++++++++.+++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHHH
Confidence 456777777777776665555544443
No 98
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=35.11 E-value=47 Score=23.13 Aligned_cols=22 Identities=14% Similarity=-0.082 Sum_probs=9.7
Q ss_pred eeeeehhHHHHHHHHHHHHhhh
Q 036642 888 WLYVSIALGFMGGFWCLIGPLL 909 (938)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~ 909 (938)
-+.+++++..++..+++.++++
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhh
Confidence 3444555554444443333333
No 99
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=34.37 E-value=22 Score=30.51 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=10.2
Q ss_pred eeehhHHHHHHHHHHHHhhhhccccc
Q 036642 890 YVSIALGFMGGFWCLIGPLLASRRWR 915 (938)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (938)
+++++++.++++.+++++++|+..+|
T Consensus 68 iagi~vg~~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred EEEEEeehhhHHHHHHHHHhheeEEe
Confidence 33333433333333344444433333
No 100
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=29.39 E-value=39 Score=23.08 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 036642 895 LGFMGGFW 902 (938)
Q Consensus 895 ~~~~~~~~ 902 (938)
+++++|+.
T Consensus 10 v~V~vg~~ 17 (38)
T PF02439_consen 10 VAVVVGMA 17 (38)
T ss_pred HHHHHHHH
Confidence 33444433
No 101
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.03 E-value=32 Score=29.45 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHhccc
Q 036642 4 VLVFAFLLFELLAIATVSVS 23 (938)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (938)
++|++.++++++.++++.++
T Consensus 5 ~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44444444444444344443
No 102
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.78 E-value=33 Score=46.83 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=40.2
Q ss_pred EeecCccCccCchhccCccCCCEEeCcCccCccc--C---CccccccCCCCEEECCCCcccccCCccccCCC
Q 036642 758 DFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGR--I---PESIGAMRSLESIDFSLNQLSGEIPQSMSSLT 824 (938)
Q Consensus 758 ~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~--i---p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 824 (938)
||++|+|+..-+..|..+.+|+.|+|++|.+.-. + ..++.. ...+ -.....+.+.-|..+.+.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~-~~v~--v~~~~~i~CasP~~LrG~~ 69 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE-KGVK--VRQPEAALCAGPGALAGQP 69 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHh-cCcc--ccCCcccCCCCChHHCCCC
Confidence 6899999965556678899999999999988621 1 112211 1111 1123457777887766543
No 103
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.46 E-value=28 Score=31.24 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=10.3
Q ss_pred eeehhHHHHHHHHHHHHhhhh
Q 036642 890 YVSIALGFMGGFWCLIGPLLA 910 (938)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~ 910 (938)
+.++++|+++|+++++++++|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHH
Confidence 344445555555555444333
No 104
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=23.97 E-value=54 Score=20.08 Aligned_cols=11 Identities=55% Similarity=0.489 Sum_probs=5.2
Q ss_pred CCCcEEecCCC
Q 036642 142 GNLRYLNLSYT 152 (938)
Q Consensus 142 ~~L~~L~Ls~n 152 (938)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
Done!