Query 036642
Match_columns 938
No_of_seqs 895 out of 5621
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.2E-92 1.8E-96 860.1 51.7 705 34-871 9-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 1E-71 3.5E-76 680.9 45.5 617 109-839 92-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-59 5.4E-64 568.7 50.6 590 142-842 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 8.7E-58 3E-62 553.5 51.5 578 107-817 17-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 8.2E-55 2.8E-59 520.3 43.3 532 107-844 25-567 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 2E-54 6.7E-59 533.8 39.0 245 558-869 338-589 (844)
7 3t6q_A CD180 antigen; protein- 100.0 1.4E-53 4.8E-58 509.6 44.7 533 68-817 14-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-53 4.7E-58 509.7 39.9 545 121-848 15-569 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-51 1.1E-55 489.1 40.0 529 107-817 24-562 (606)
10 4eco_A Uncharacterized protein 100.0 1.1E-52 3.7E-57 500.9 24.8 513 34-692 27-601 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-50 6E-55 498.6 35.2 529 107-817 17-564 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 3.3E-50 1.1E-54 485.7 31.3 521 32-690 264-863 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 9E-48 3.1E-52 456.2 38.8 501 118-846 29-540 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 1.4E-46 4.8E-51 446.0 34.3 509 192-858 9-529 (570)
15 4g8a_A TOLL-like receptor 4; l 100.0 3.5E-45 1.2E-49 440.2 42.5 533 108-843 45-586 (635)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-45 5.3E-50 434.7 36.1 484 240-846 26-519 (549)
17 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-45 1.7E-49 430.3 35.0 482 121-646 9-514 (549)
18 4eco_A Uncharacterized protein 100.0 6.2E-46 2.1E-50 442.6 23.6 451 265-838 81-601 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-45 9E-50 429.4 26.9 460 269-843 4-487 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 6.3E-43 2.2E-47 420.5 38.8 517 79-815 53-582 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-43 6.4E-48 413.6 30.1 457 120-695 3-485 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 1.1E-42 3.9E-47 420.1 32.1 448 289-838 323-841 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-42 9.9E-47 406.9 26.2 463 268-845 34-518 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-40 1E-44 389.7 32.5 460 118-695 32-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.1E-39 3.9E-44 371.3 20.8 300 265-642 11-310 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 2.8E-39 9.5E-44 368.1 22.3 427 113-650 7-437 (454)
27 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-39 4.2E-44 353.4 15.7 293 33-348 2-302 (313)
28 3v47_A TOLL-like receptor 5B a 100.0 8.6E-38 2.9E-42 359.3 30.1 356 438-846 31-417 (455)
29 3v47_A TOLL-like receptor 5B a 100.0 7.5E-38 2.6E-42 359.8 29.5 376 216-696 30-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.6E-36 8.8E-41 343.9 28.6 412 134-700 34-452 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.6E-40 338.8 26.5 357 384-843 36-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 5.6E-34 1.9E-38 327.6 31.3 344 367-839 47-390 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 8.1E-35 2.8E-39 336.4 23.0 322 418-842 15-338 (477)
34 1o6v_A Internalin A; bacterial 100.0 2.7E-33 9.4E-38 321.9 34.4 344 117-500 46-389 (466)
35 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-34 5.3E-39 313.2 19.5 257 558-868 50-312 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 3E-33 1E-37 323.2 26.1 310 108-428 25-334 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 2.8E-32 9.5E-37 306.2 28.4 312 114-476 42-354 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 7.5E-32 2.5E-36 302.7 26.2 329 460-862 44-377 (390)
39 3oja_B Anopheles plasmodium-re 100.0 1.7E-31 5.8E-36 316.4 29.0 312 115-476 49-360 (597)
40 3oja_B Anopheles plasmodium-re 100.0 8.8E-32 3E-36 318.9 26.2 330 460-863 50-384 (597)
41 4fmz_A Internalin; leucine ric 100.0 3E-30 1E-34 285.0 32.0 286 113-428 40-325 (347)
42 4fcg_A Uncharacterized protein 100.0 5E-32 1.7E-36 295.2 13.4 277 34-349 24-313 (328)
43 4fmz_A Internalin; leucine ric 100.0 1.2E-29 4.2E-34 280.0 31.4 307 138-522 40-346 (347)
44 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-33 7.6E-38 323.2 -0.0 308 457-815 52-413 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-32 8.6E-37 314.4 2.7 361 216-619 3-411 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-29 1.2E-33 274.1 24.3 290 117-425 33-331 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 3.8E-29 1.3E-33 274.0 24.4 286 462-835 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 1.4E-28 4.9E-33 269.3 28.2 276 108-425 45-330 (330)
49 1xku_A Decorin; proteoglycan, 100.0 5.4E-28 1.8E-32 264.7 29.5 291 64-401 29-330 (330)
50 3ogk_B Coronatine-insensitive 100.0 9.1E-30 3.1E-34 302.9 6.1 439 110-664 66-548 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 4.2E-28 1.4E-32 268.1 17.4 276 511-842 33-319 (353)
52 4fcg_A Uncharacterized protein 100.0 7.9E-28 2.7E-32 262.0 18.6 226 557-837 80-314 (328)
53 3ogk_B Coronatine-insensitive 100.0 2.7E-29 9.1E-34 298.9 6.2 81 753-833 464-547 (592)
54 2z66_A Variable lymphocyte rec 100.0 2.2E-27 7.5E-32 256.9 20.2 235 558-842 28-266 (306)
55 2z66_A Variable lymphocyte rec 99.9 1.7E-27 5.8E-32 257.8 15.8 274 513-842 11-292 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 2.9E-26 1E-30 262.2 23.7 236 108-351 68-304 (452)
57 2z80_A TOLL-like receptor 2, v 99.9 1.9E-26 6.6E-31 254.8 21.0 284 114-429 28-316 (353)
58 1ozn_A Reticulon 4 receptor; N 99.9 8.9E-27 3E-31 249.2 15.8 229 561-843 14-244 (285)
59 3zyi_A Leucine-rich repeat-con 99.9 8E-26 2.7E-30 258.6 23.3 230 559-841 76-307 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 6.5E-26 2.2E-30 258.4 22.4 250 511-841 45-296 (440)
61 3zyj_A Leucine-rich repeat-con 99.9 1.6E-25 5.5E-30 255.1 23.3 245 487-814 44-293 (440)
62 1wwl_A Monocyte differentiatio 99.9 2.5E-27 8.5E-32 256.7 7.8 227 560-839 65-311 (312)
63 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-25 8.2E-30 238.1 22.6 213 107-325 24-237 (285)
64 2p1m_B Transport inhibitor res 99.9 1.9E-27 6.5E-32 283.1 1.0 110 555-665 429-542 (594)
65 3oja_A Leucine-rich immune mol 99.9 2.6E-25 9E-30 255.5 18.2 220 555-838 31-251 (487)
66 3g06_A SSPH2 (leucine-rich rep 99.9 4.8E-25 1.6E-29 258.1 20.5 288 55-410 11-304 (622)
67 1wwl_A Monocyte differentiatio 99.9 2.7E-26 9.3E-31 248.5 8.2 247 555-861 40-310 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-25 1.1E-29 240.7 16.0 219 555-837 31-250 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 8.6E-24 3E-28 247.4 27.6 270 367-704 41-310 (622)
70 3o53_A Protein LRIM1, AGAP0063 99.9 6.4E-26 2.2E-30 246.2 8.5 149 558-710 120-270 (317)
71 2o6q_A Variable lymphocyte rec 99.9 6.3E-24 2.2E-28 224.8 23.5 217 63-326 2-218 (270)
72 2z62_A TOLL-like receptor 4, v 99.9 2.5E-24 8.7E-29 228.9 19.8 211 582-844 28-244 (276)
73 3oja_A Leucine-rich immune mol 99.9 2.4E-25 8.2E-30 255.8 10.7 235 530-832 34-270 (487)
74 2p1m_B Transport inhibitor res 99.9 2.3E-26 8E-31 273.6 1.8 18 234-251 60-77 (594)
75 2o6q_A Variable lymphocyte rec 99.9 8.5E-23 2.9E-27 216.1 21.5 206 560-842 18-223 (270)
76 3rfs_A Internalin B, repeat mo 99.9 7E-24 2.4E-28 224.6 12.1 223 558-843 19-241 (272)
77 2z62_A TOLL-like receptor 4, v 99.9 1.6E-22 5.5E-27 215.0 20.0 216 107-352 20-239 (276)
78 2ca6_A RAN GTPase-activating p 99.9 1.6E-24 5.4E-29 242.6 2.9 240 552-841 26-320 (386)
79 1p9a_G Platelet glycoprotein I 99.9 2.8E-22 9.5E-27 213.9 19.2 205 555-840 7-211 (290)
80 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4.1E-27 215.1 14.6 208 555-824 38-246 (272)
81 1p9a_G Platelet glycoprotein I 99.9 7.7E-22 2.6E-26 210.5 18.7 202 529-815 9-210 (290)
82 3goz_A Leucine-rich repeat-con 99.9 3.4E-23 1.2E-27 229.2 8.3 130 514-643 3-152 (362)
83 3goz_A Leucine-rich repeat-con 99.9 4E-23 1.4E-27 228.7 7.6 160 535-698 3-187 (362)
84 2ca6_A RAN GTPase-activating p 99.9 4.2E-23 1.4E-27 231.0 7.0 237 530-817 32-320 (386)
85 4glp_A Monocyte differentiatio 99.9 1.2E-22 4.1E-27 219.7 10.2 199 583-838 92-308 (310)
86 3m19_A Variable lymphocyte rec 99.9 3.9E-21 1.3E-25 200.9 20.7 192 64-304 3-194 (251)
87 4glp_A Monocyte differentiatio 99.9 5E-22 1.7E-26 214.8 13.0 232 530-814 64-308 (310)
88 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.3E-26 204.0 15.1 211 583-871 15-232 (251)
89 2ast_B S-phase kinase-associat 99.9 1.9E-22 6.5E-27 221.3 7.6 248 532-842 49-311 (336)
90 2ast_B S-phase kinase-associat 99.9 7.8E-23 2.7E-27 224.4 2.8 271 63-388 34-315 (336)
91 2xwt_C Thyrotropin receptor; s 99.9 1.9E-21 6.7E-26 201.7 12.7 195 583-834 32-236 (239)
92 1h6u_A Internalin H; cell adhe 99.8 1.1E-20 3.7E-25 203.7 17.5 208 563-838 24-231 (308)
93 1h6u_A Internalin H; cell adhe 99.8 2.1E-20 7.3E-25 201.4 18.8 194 114-351 38-231 (308)
94 2xwt_C Thyrotropin receptor; s 99.8 4.1E-21 1.4E-25 199.3 12.5 203 108-323 25-236 (239)
95 2o6s_A Variable lymphocyte rec 99.8 5.7E-20 2E-24 186.1 17.1 161 117-288 28-188 (208)
96 3cvr_A Invasion plasmid antige 99.8 7.7E-20 2.6E-24 211.2 14.4 187 559-823 60-253 (571)
97 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.8E-24 209.0 15.9 210 56-338 33-255 (571)
98 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 176.9 16.8 181 120-314 10-190 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-19 4.5E-24 184.7 10.3 178 632-863 14-193 (220)
100 4ay9_X Follicle-stimulating ho 99.8 1.1E-18 3.6E-23 192.0 17.7 222 558-835 30-257 (350)
101 4ay9_X Follicle-stimulating ho 99.8 6.4E-19 2.2E-23 193.8 14.1 235 561-854 12-253 (350)
102 3e6j_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 175.1 18.4 163 58-254 11-173 (229)
103 2v9t_B SLIT homolog 2 protein 99.8 9.6E-19 3.3E-23 178.3 10.3 157 632-842 14-170 (220)
104 1h6t_A Internalin B; cell adhe 99.7 2.9E-18 9.9E-23 183.0 11.5 189 560-838 26-214 (291)
105 3e6j_A Variable lymphocyte rec 99.7 1.4E-17 5E-22 170.8 15.3 157 631-842 21-177 (229)
106 1dce_A Protein (RAB geranylger 99.7 2.1E-20 7E-25 217.5 -7.0 203 555-842 346-551 (567)
107 1h6t_A Internalin B; cell adhe 99.7 9.9E-18 3.4E-22 178.8 14.1 171 140-327 44-214 (291)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 9.7E-18 3.3E-22 170.8 13.4 157 585-817 14-170 (220)
109 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.6E-22 194.2 17.1 129 557-695 42-170 (605)
110 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.9E-22 194.6 16.5 172 114-327 40-211 (605)
111 1dce_A Protein (RAB geranylger 99.7 4.5E-20 1.5E-24 214.6 -8.0 201 603-863 346-549 (567)
112 2xot_A Amphoterin-induced prot 99.7 8E-18 2.7E-22 185.8 10.3 115 585-703 21-137 (361)
113 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.8E-21 162.2 17.2 128 120-253 14-141 (220)
114 1w8a_A SLIT protein; signaling 99.7 1.7E-17 5.7E-22 165.2 9.3 109 755-863 57-166 (192)
115 2xot_A Amphoterin-induced prot 99.7 1E-16 3.5E-21 176.9 14.1 176 120-326 21-202 (361)
116 4ezg_A Putative uncharacterize 99.7 8.6E-17 2.9E-21 161.0 12.1 81 755-838 115-195 (197)
117 4b8c_D Glucose-repressible alc 99.7 8.7E-18 3E-22 201.8 5.4 215 530-814 173-405 (727)
118 4b8c_D Glucose-repressible alc 99.7 1.8E-17 6.1E-22 199.0 7.8 140 553-697 219-360 (727)
119 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.9E-21 159.3 12.3 155 579-814 41-195 (197)
120 1xeu_A Internalin C; cellular 99.7 3.8E-17 1.3E-21 171.4 7.9 168 115-301 17-184 (263)
121 1w8a_A SLIT protein; signaling 99.7 1.5E-16 5.3E-21 158.2 9.9 155 632-842 11-167 (192)
122 1xeu_A Internalin C; cellular 99.6 1.2E-16 4.2E-21 167.5 8.3 169 140-326 17-185 (263)
123 2wfh_A SLIT homolog 2 protein 99.6 1.2E-15 4.2E-20 151.5 9.5 132 657-842 13-144 (193)
124 3sb4_A Hypothetical leucine ri 99.6 2E-16 6.8E-21 172.3 3.8 294 107-421 13-328 (329)
125 3sb4_A Hypothetical leucine ri 99.6 6E-16 2.1E-20 168.5 7.6 218 557-830 100-327 (329)
126 2ell_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 145.5 10.4 136 654-842 24-164 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 7.4E-15 2.5E-19 142.8 11.2 138 628-819 23-165 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 3.4E-15 1.2E-19 141.9 8.3 129 653-833 16-149 (149)
129 2o6r_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 141.7 12.4 88 755-842 55-142 (177)
130 2je0_A Acidic leucine-rich nuc 99.5 9E-15 3.1E-19 139.0 8.7 129 628-809 16-149 (149)
131 2wfh_A SLIT homolog 2 protein 99.5 1.1E-13 3.7E-18 137.5 13.5 109 143-254 32-140 (193)
132 1ds9_A Outer arm dynein; leuci 99.5 1.2E-15 3.9E-20 152.9 -1.9 153 627-837 16-185 (198)
133 2o6r_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 131.7 16.2 130 119-254 9-138 (177)
134 4fdw_A Leucine rich hypothetic 99.4 3.4E-12 1.1E-16 141.7 21.8 100 143-249 136-235 (401)
135 3g39_A Variable lymphocyte rec 99.4 2.6E-13 8.9E-18 131.7 10.6 90 754-843 32-121 (170)
136 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-13 4.5E-18 134.9 7.6 134 112-250 14-150 (176)
137 4fdw_A Leucine rich hypothetic 99.4 3.1E-12 1E-16 142.0 19.2 224 112-351 131-359 (401)
138 1a9n_A U2A', U2A'; complex (nu 99.4 2.8E-13 9.5E-18 132.6 9.5 81 755-837 67-153 (176)
139 1ds9_A Outer arm dynein; leuci 99.4 1.2E-14 4.1E-19 145.4 -2.7 150 554-708 14-180 (198)
140 2r9u_A Variable lymphocyte rec 99.4 8.8E-13 3E-17 128.4 10.6 89 754-842 35-123 (174)
141 4fs7_A Uncharacterized protein 99.3 2.3E-11 7.8E-16 135.7 19.8 198 137-347 66-263 (394)
142 4fs7_A Uncharacterized protein 99.3 5.9E-11 2E-15 132.4 21.1 219 384-639 156-376 (394)
143 3g39_A Variable lymphocyte rec 99.3 2.5E-11 8.6E-16 117.6 12.9 106 119-254 11-116 (170)
144 3un9_A NLR family member X1; l 99.3 3.4E-13 1.2E-17 148.2 -1.1 62 755-816 186-255 (372)
145 2r9u_A Variable lymphocyte rec 99.2 4.1E-11 1.4E-15 116.5 13.1 58 120-181 15-72 (174)
146 2ifg_A High affinity nerve gro 99.2 3.7E-11 1.3E-15 131.7 10.1 86 755-841 34-120 (347)
147 3un9_A NLR family member X1; l 99.2 3.1E-12 1.1E-16 140.6 0.5 15 190-204 72-86 (372)
148 2ifg_A High affinity nerve gro 99.1 2.5E-10 8.4E-15 125.1 11.0 95 108-205 23-118 (347)
149 4gt6_A Cell surface protein; l 99.1 1.3E-08 4.4E-13 113.3 24.2 103 143-250 65-170 (394)
150 4gt6_A Cell surface protein; l 99.0 6.8E-09 2.3E-13 115.6 20.3 159 155-322 52-214 (394)
151 2ra8_A Uncharacterized protein 98.8 4E-09 1.4E-13 114.6 6.6 80 754-835 254-341 (362)
152 2ra8_A Uncharacterized protein 98.7 9.2E-09 3.2E-13 111.8 6.8 186 554-811 135-341 (362)
153 4h09_A Hypothetical leucine ri 98.7 1.4E-06 4.7E-11 96.4 21.8 288 113-421 42-340 (379)
154 4h09_A Hypothetical leucine ri 98.6 2.3E-06 7.8E-11 94.6 20.6 127 577-708 212-339 (379)
155 1io0_A Tropomodulin; LRR prote 98.4 1.5E-07 5.1E-12 92.1 4.4 65 531-595 37-106 (185)
156 3rw6_A Nuclear RNA export fact 98.4 1.4E-07 4.7E-12 97.0 3.2 78 751-830 169-257 (267)
157 3rw6_A Nuclear RNA export fact 98.3 2.5E-07 8.6E-12 95.0 3.2 84 757-842 148-238 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 1.3E-06 4.4E-11 85.4 6.5 121 282-427 29-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 1.4E-05 4.7E-10 75.9 6.7 85 265-349 61-151 (176)
160 3e4g_A ATP synthase subunit S, 97.6 1.5E-05 5E-10 75.7 1.9 35 142-176 61-95 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.0002 6.9E-09 69.2 4.8 66 530-595 41-111 (197)
162 3rfe_A Platelet glycoprotein I 96.9 0.0013 4.5E-08 59.4 6.7 40 801-840 32-71 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0034 1.1E-07 60.7 7.7 42 311-352 68-113 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0025 8.6E-08 57.5 6.2 58 755-814 11-69 (130)
165 2lz0_A Uncharacterized protein 40.1 37 0.0013 28.2 4.9 40 158-198 12-51 (100)
166 2ks1_B Epidermal growth factor 33.6 16 0.00054 25.1 1.2 18 896-913 20-37 (44)
167 2lz0_A Uncharacterized protein 30.7 56 0.0019 27.0 4.5 41 574-615 12-52 (100)
168 2l2t_A Receptor tyrosine-prote 29.2 18 0.00061 24.8 0.9 9 905-913 28-36 (44)
169 2k1k_A Ephrin type-A receptor 21.2 43 0.0015 22.2 1.6 14 891-904 14-27 (38)
170 2l9u_A Receptor tyrosine-prote 21.2 46 0.0016 21.0 1.6 21 892-912 11-31 (40)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.2e-92 Score=860.10 Aligned_cols=705 Identities=30% Similarity=0.440 Sum_probs=503.2
Q ss_pred CcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCcc---cc
Q 036642 34 CLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGK---VN 110 (938)
Q Consensus 34 ~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~---l~ 110 (938)
+.++|++||++||+++.||. .+++|..+++||.|+||+|+ .|||++++|++. .+.|. +|
T Consensus 9 ~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~---------------~l~g~~~~l~ 70 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK---------------PLNVGFSAVS 70 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS---------------CCCEEHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCC---------------CcCCccCccC
Confidence 46889999999999999988 89999765899999999998 699999999983 77888 89
Q ss_pred CCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCc--CCCCCCcccEEECCCCcccccCcccc-C
Q 036642 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPP--QLGNLSNLQYLDLSWNFLYVENLWWL-P 187 (938)
Q Consensus 111 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~L~~L~~L~Ls~n~i~~~~~~~~-~ 187 (938)
+++.++++|+.++++.+.+. .+|..++++++|++|+|++|.+++.+|. .++++++|++|++++|.+....+..+ .
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred hhHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 99999999999999999876 4678899999999999999999998998 99999999999999999876555544 6
Q ss_pred CCCCCCEEeCCCCCCCCCcch-hhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642 188 GLSFLKDLDLSYVNLSKASDW-LRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ 266 (938)
Q Consensus 188 ~l~~L~~L~Ls~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 266 (938)
++++|++|++++|++++.... ...+.++++|++|++++|.+++..+. ..+++|++|++++|.+.+.. |. ++++++
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~-~~-l~~l~~ 224 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGI-PF-LGDCSA 224 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCC-CB-CTTCCS
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCC-cc-cccCCC
Confidence 777888888887777654321 11256666677777776666654432 55666666666666665533 33 555566
Q ss_pred CCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhcc-CCCCeeecC
Q 036642 267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL-CNLRSVMLS 345 (938)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~ 345 (938)
|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... +
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-------- 294 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-------- 294 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT--------
T ss_pred CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC--------
Confidence 666666666655555555555555666666555555544443 45555555555555555544444332 4
Q ss_pred CCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeeccccccc-ccCCCCCcEEEccCc
Q 036642 346 CVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFS-LGHLSTLQFIDLSYN 424 (938)
Q Consensus 346 ~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n 424 (938)
+|++|++++|.+++.+|..++.+++|++|++++|++++.+|.. +..+++|++|++++|
T Consensus 295 ---------------------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 295 ---------------------TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp ---------------------TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred ---------------------cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 4555555555555555555566666666666666666555543 556666666666666
Q ss_pred cCCC-CCCCCCCcc-ccceeecccccCCCCCCcccCC--CCCCcEEEccCcccccccchhHhhcCcCccEEecccccccc
Q 036642 425 ELNG-MNDNWIPPF-QLATLGLRHCHLGSRFPSWLHS--QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHG 500 (938)
Q Consensus 425 ~l~~-~~~~~~~~~-~L~~L~L~~~~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 500 (938)
++++ ++..+.... +|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+ ..+++|+.|++++|++++
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEES
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccC
Confidence 5553 111111111 2222233333222233333333 4455555555555555544443 334455555555555554
Q ss_pred cCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh
Q 036642 501 QIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM 579 (938)
Q Consensus 501 ~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~ 579 (938)
.+| .+..+++| ++|++++|.+++.+| ..+..+++|++|++++|++++.+|..+.
T Consensus 433 ~~p~~l~~l~~L---------------------~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 433 TIPSSLGSLSKL---------------------RDLKLWLNMLEGEIP----QELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp CCCGGGGGCTTC---------------------CEEECCSSCCCSCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccHHHhcCCCC---------------------CEEECCCCcccCcCC----HHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 444 34444444 444444444444443 2344577788888888888888888888
Q ss_pred cCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccE
Q 036642 580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVV 658 (938)
Q Consensus 580 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~ 658 (938)
++++|++|++++|++++.+|.+++.+++|++|+|++|+++|.+| .+.++++|+.|++++|+++|.+|.+++ ....+..
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~ 566 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIA 566 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBC
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhh
Confidence 88888888888888888888888888888888888888887777 788888888888888888888888776 3444433
Q ss_pred EeeCC---------C-------------cccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhh
Q 036642 659 LILRS---------N-------------KFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQ 716 (938)
Q Consensus 659 L~L~~---------n-------------~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~ 716 (938)
+.+.. + .+.+..+..+..++.++.++++.|.+.|.+|..+..++.|
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L------------ 634 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM------------ 634 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC------------
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc------------
Confidence 33222 1 2345556666667777777788888888887777665554
Q ss_pred hhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccc
Q 036642 717 YQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI 796 (938)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 796 (938)
+.|||++|+++|.+|.++++++.|+.|+|++|+++|.||+.|
T Consensus 635 --------------------------------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 635 --------------------------------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp --------------------------------------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred --------------------------------------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence 789999999999999999999999999999999999999999
Q ss_pred cccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcCCC-CCCCCCCCCCCCCC
Q 036642 797 GAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAPLPRNCSEH 871 (938)
Q Consensus 797 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~~~~c~~~ 871 (938)
+++++|++||||+|+++|.+|..++++++|++||+++|+++|.||.++||++|+..+|.|| ++||.|+. .|...
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999987 89633
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-71 Score=680.87 Aligned_cols=617 Identities=31% Similarity=0.395 Sum_probs=498.3
Q ss_pred ccCCccCCCCCCEEeCCCCCCCCCcccc--cccCCCCCcEEecCCCcCCCCCCcCC-CCCCcccEEECCCCcccccCccc
Q 036642 109 VNPSLLDLKHLSYLDLSYNDFQGVQIPR--FICSMGNLRYLNLSYTQFVGMIPPQL-GNLSNLQYLDLSWNFLYVENLWW 185 (938)
Q Consensus 109 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~L~~L~~L~Ls~n~i~~~~~~~ 185 (938)
+|+.++++++|++|||++|.+++. +|. .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+....+..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 458899999999999999999974 787 89999999999999999999988877 89999999999999998877766
Q ss_pred ---cCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCccccc
Q 036642 186 ---LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262 (938)
Q Consensus 186 ---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 262 (938)
+.++++|++|++++|.+++..+ +..+++|++|++++|.+++..+. ++++++|++|++++|.+++.. +..+.
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~ 244 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAIS 244 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTT
T ss_pred hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHh
Confidence 8999999999999999987543 37899999999999999998877 999999999999999999876 88999
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcC-CCCCEEEccCCcCCchhhHhhhccCCCCe
Q 036642 263 GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRF-NRLESLGVSNNSLQGRVIRSMASLCNLRS 341 (938)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 341 (938)
.+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++..|..++.+++|+.
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence 9999999999999999888875 89999999999999999999998875 99999999999999999999999999999
Q ss_pred eecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCC-CccEEEccCCeecccccccccC--CCCCcE
Q 036642 342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFK-NLYYLDLSNNSIVGPIPFSLGH--LSTLQF 418 (938)
Q Consensus 342 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~ 418 (938)
|++++|.+.+.+|.. .++.++ +|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+.. +++|++
T Consensus 323 L~L~~n~l~~~ip~~---~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 323 LALSSNNFSGELPMD---TLLKMR-GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp EECCSSEEEEECCHH---HHTTCT-TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred EECCCCcccCcCCHH---HHhcCC-CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 999999998777652 244444 677777777777777777666665 7777777777777666666555 566666
Q ss_pred EEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccc
Q 036642 419 IDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI 498 (938)
Q Consensus 419 L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 498 (938)
|++++|.+++ .+|..+..+++|++|++++|.+++.+|..+ ..+++|+.|++++|.+
T Consensus 399 L~L~~n~l~~-----------------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 399 LYLQNNGFTG-----------------------KIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNML 454 (768)
T ss_dssp EECCSSEEEE-----------------------ECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCC
T ss_pred EECCCCcccc-----------------------ccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcc
Confidence 6666666554 577788888888889998888888888765 5578889999998888
Q ss_pred cccCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchh
Q 036642 499 HGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC 577 (938)
Q Consensus 499 ~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~ 577 (938)
++.+| .+..+++|++|++++|++++.+|.. +..+++|++|++++|++++.+|..
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-------------------------l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSG-------------------------LSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-------------------------GGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHH-------------------------HhcCCCCCEEEccCCccCCcCChH
Confidence 88777 6777777777777777777666642 233455555555555555555555
Q ss_pred hhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCC-----------------
Q 036642 578 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGEN----------------- 639 (938)
Q Consensus 578 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N----------------- 639 (938)
++.+++|++|++++|++++.+|..++.+++|+.|++++|+++|.+| .+..+..+..+++..+
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 5555555555555555555555555555555555555555555555 4444433333322221
Q ss_pred -----ccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccch
Q 036642 640 -----EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKA 714 (938)
Q Consensus 640 -----~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~ 714 (938)
.+.+..+..+. .++.++.+++..|.+.|.+|..+..+++|+.||+++|+++|.+|..+++++.|
T Consensus 590 ~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L---------- 658 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL---------- 658 (768)
T ss_dssp SEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC----------
T ss_pred cccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC----------
Confidence 23455566665 67888889999999999999999999999999999999999999999988876
Q ss_pred hhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCc
Q 036642 715 IQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPE 794 (938)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 794 (938)
+.|||++|+++|.||..++++++|+.||||+|+++|.||+
T Consensus 659 ----------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 659 ----------------------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp ----------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred ----------------------------------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 7899999999999999999999999999999999999999
Q ss_pred cccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCc-cccc
Q 036642 795 SIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNN-LTGK 839 (938)
Q Consensus 795 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g~ 839 (938)
.++++++|++||+|+|+++|.||.. ..+..+....+.+|+ |+|.
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred HHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 9999999999999999999999976 344555666677885 6764
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-59 Score=568.73 Aligned_cols=590 Identities=21% Similarity=0.209 Sum_probs=359.7
Q ss_pred CCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEE
Q 036642 142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKL 221 (938)
Q Consensus 142 ~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L 221 (938)
+++++|++++|.+++..+..|+++++|++|++++|.+....+..|.++++|++|++++|.++.++. ..+.++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT--TTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh--hhhccCCCCCEE
Confidence 344444444444444444444444444444444444444433344444444444444444443321 234455555555
Q ss_pred EcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCcccc--CCCCCCEEECcCC
Q 036642 222 RLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQ--NLTSLKHLLLDSN 299 (938)
Q Consensus 222 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n 299 (938)
++++|+++++++..|+++++|++|++++|.+.+.. +..+.++++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 55555555555555666666666666666655543 45555566666666666666554444432 3456666666666
Q ss_pred cCCCccchhhhcCCCCCEEEccCCcCCchhhHhhh---ccCCCCeeecCCCcCccchhhHHHhhhcccc-cCccEEEccC
Q 036642 300 RFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA---SLCNLRSVMLSCVKLSQEISEIFDIFSGCVS-SGLEILVLRG 375 (938)
Q Consensus 300 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~~L~~L~l~~ 375 (938)
.+++..|..+..+++|+.|+++++.+.+.....+. ..++|+.|++++|.+.+..+.. +..+. ++|+.|++++
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~----~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT----FLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT----TGGGGGSCCCEEECTT
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH----hhccCcCCCCEEECCC
Confidence 66666666666666666666666655433322221 2244555555555554444432 11111 1355555555
Q ss_pred CcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCc
Q 036642 376 SSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPS 455 (938)
Q Consensus 376 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~ 455 (938)
|.+.+..+..++.+++|++|++++|++.+..|..+..+++|++|++++|...+... . ..+|.
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--------------~----~~lp~ 319 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS--------------L----ASLPK 319 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------------------------CCE
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc--------------c----ccccc
Confidence 55555444455555555555555555555444455555555555554433221000 0 00111
Q ss_pred ccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCcE
Q 036642 456 WLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIE 534 (938)
Q Consensus 456 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~ 534 (938)
++...+..+++|++|++++|.+++..+ .+..+++|++|++++|.+...
T Consensus 320 ---------------------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~---------- 368 (680)
T 1ziw_A 320 ---------------------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR---------- 368 (680)
T ss_dssp ---------------------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC----------
T ss_pred ---------------------cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh----------
Confidence 011112233444444444444444333 244444444444444433211
Q ss_pred EEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCC-cccCCCCCCcEEEc
Q 036642 535 LDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSLHL 613 (938)
Q Consensus 535 L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L 613 (938)
........-...++|+.|++++|++++..|..+..+++|+.|++++|.+++.+| ..+..+++|++|++
T Consensus 369 -----------~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 369 -----------TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp -----------EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred -----------hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 000000000113578888888888888888888888888999999888887666 67888888999999
Q ss_pred cccccccccc-ccccCcCCcEEECCCCccC--CCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccc
Q 036642 614 RKNNLSGTIH-SLKNCTALLTLDVGENEFV--ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL 690 (938)
Q Consensus 614 ~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 690 (938)
++|++++..+ .+..+++|+.|++++|.+. +.+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 9998887777 8888889999999988876 56777776 789999999999999988888899999999999999998
Q ss_pred ccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCch
Q 036642 691 SGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPL 770 (938)
Q Consensus 691 ~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~ 770 (938)
++..+..+..- .......++.|+.|+|++|+++ .+|.
T Consensus 517 ~~~~~~~~~~~------------------------------------------~~~~~~~l~~L~~L~L~~N~l~-~i~~ 553 (680)
T 1ziw_A 517 ARLWKHANPGG------------------------------------------PIYFLKGLSHLHILNLESNGFD-EIPV 553 (680)
T ss_dssp GGGGSTTSTTS------------------------------------------CCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cccchhhccCC------------------------------------------cchhhcCCCCCCEEECCCCCCC-CCCH
Confidence 85433221100 0001122345689999999999 5665
Q ss_pred -hccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCcccc-CCCCCCeEeCcCCcccccCCC
Q 036642 771 -EVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS-SLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 771 -~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~ 842 (938)
.++++++|+.|+|++|++++..|..|.++++|+.|||++|++++..|..+. .+++|+++++++|++.|.|+.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 589999999999999999987777889999999999999999998888887 789999999999999999986
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.7e-58 Score=553.50 Aligned_cols=578 Identities=22% Similarity=0.242 Sum_probs=420.3
Q ss_pred ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL 186 (938)
Q Consensus 107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~ 186 (938)
.++|..+. +++++|+|++|.++++ .+..++++++|++|++++|.+++..|..|+++++|++|++++|.+.......|
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence 35676665 6899999999999975 56679999999999999999999999999999999999999999998888889
Q ss_pred CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccc--cCC
Q 036642 187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV--FGL 264 (938)
Q Consensus 187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l 264 (938)
.++++|++|++++|.++.++. ..+.++++|++|++++|.+++.++..+.++++|++|++++|.+++.. +..+ ..+
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~ 170 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFAN 170 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTT
T ss_pred ccCCCCCEEECCCCccCccCh--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC-HHHhhcccc
Confidence 999999999999999987753 56889999999999999999999999999999999999999998754 5544 356
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhh---cCCCCCEEEccCCcCCchhhHhhhccCC--C
Q 036642 265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLY---RFNRLESLGVSNNSLQGRVIRSMASLCN--L 339 (938)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L 339 (938)
++|++|++++|.+++..|..+..+++|+.|+++++.+.+.....+. ..++|++|++++|.+.+..+..+..++. |
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 8999999999999999999999999999999999987643332221 3589999999999999999999988865 9
Q ss_pred CeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccc-----cc----cc
Q 036642 340 RSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPI-----PF----SL 410 (938)
Q Consensus 340 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~----~l 410 (938)
+.|++++|.+.+..+. .++.++ +|++|++++|.+.+..|..+..+++|++|++++|...+.+ |. .+
T Consensus 251 ~~L~Ls~n~l~~~~~~----~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGND----SFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp CEEECTTSCCCEECTT----TTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CEEECCCCCcCccCcc----cccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 9999999999988776 455566 9999999999999999999999999999999987655422 22 45
Q ss_pred cCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccc-cchhHhhc--CcC
Q 036642 411 GHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS-IPNIFWSS--ASQ 487 (938)
Q Consensus 411 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~--l~~ 487 (938)
..+++|++|++++|.+++ ..+..+..+++|++|++++|.+... ++...+.. .++
T Consensus 326 ~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~ 382 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPG-----------------------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382 (680)
T ss_dssp TTCTTCCEEECCSCCBCC-----------------------CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred ccCCCCCEEECCCCccCC-----------------------CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence 566666666666666555 3455566777777777777764321 22211111 124
Q ss_pred ccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeecc
Q 036642 488 IYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLR 566 (938)
Q Consensus 488 L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls 566 (938)
|+.|++++|++++..+ .+..+++|++|++++|.+.+.+|. ..+..+++|++|+++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG------------------------QEWRGLENIFEIYLS 438 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS------------------------GGGTTCTTCCEEECC
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc------------------------ccccCcccccEEecC
Confidence 4444444444444333 233333333333333332221110 122334444444444
Q ss_pred CccCCCccchhhhcCCCCCEEEcCCCccc--ccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCC
Q 036642 567 GNFLQGELTDCWMNYQNLMILDLSNNKFT--GNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVE 643 (938)
Q Consensus 567 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~ 643 (938)
+|++++..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++.++ .+.+
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~---------------- 502 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG---------------- 502 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT----------------
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc----------------
Confidence 44444444444444444555554444443 3344444444444444444444444333 3444
Q ss_pred CCChhHhhhcCcccEEeeCCCccccc--------CCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchh
Q 036642 644 NIPTWIGERFSRMVVLILRSNKFHSL--------LPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAI 715 (938)
Q Consensus 644 ~~p~~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~ 715 (938)
+++|++|++++|++++. .+..+..+++|+.|++++|+++...+..|.++++|
T Consensus 503 ---------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L----------- 562 (680)
T 1ziw_A 503 ---------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL----------- 562 (680)
T ss_dssp ---------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred ---------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc-----------
Confidence 45555555555554432 22347788999999999999984333456666655
Q ss_pred hhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcc
Q 036642 716 QYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPES 795 (938)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 795 (938)
+.|||++|++++..|..+.++++|+.|+|++|++++..|..
T Consensus 563 ---------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 563 ---------------------------------------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred ---------------------------------------ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 78899999999666666789999999999999999988888
Q ss_pred cc-ccCCCCEEECCCCcccccCC
Q 036642 796 IG-AMRSLESIDFSLNQLSGEIP 817 (938)
Q Consensus 796 ~~-~l~~L~~LdLs~N~l~~~ip 817 (938)
++ .+++|+.|++++|++.+..+
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBCCC
T ss_pred hcccccccCEEEccCCCcccCCc
Confidence 88 89999999999999998755
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.2e-55 Score=520.27 Aligned_cols=532 Identities=21% Similarity=0.214 Sum_probs=315.3
Q ss_pred ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL 186 (938)
Q Consensus 107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~ 186 (938)
.++|..+.. ++++|||++|.++++ .|..++++++|++|+|++|++.+..|..|+++++|++|++++|++....+..|
T Consensus 25 ~~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 25 NEIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp SSCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred ccCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 356655544 677777777777754 46667777777777777777777677777777777777777777666555555
Q ss_pred CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642 187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ 266 (938)
Q Consensus 187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 266 (938)
.++++|++|++++|.++. +.+..++++++|++|++++|.+.+...+. +..+++
T Consensus 102 ~~l~~L~~L~L~~n~i~~--------------------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~ 154 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISS--------------------------IDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEK 154 (606)
T ss_dssp SSCTTCCEEECTTSCCSC--------------------------GGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTT
T ss_pred cccccccEeeccccCccc--------------------------CCcchhccCCcccEEECCCCcccccCccc-ccCCcc
Confidence 555555555555555444 43444555555555555555555432122 223555
Q ss_pred CCEEEccCCcccCCCCccccCCCCCC--EEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeec
Q 036642 267 LVFLDLRRNNFQGPIPEGLQNLTSLK--HLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML 344 (938)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 344 (938)
|++|++++|.+++..|..++.+++|+ +|++++|.+++..|..+. ..+|++|++++|. ..+..+..+.+++...+
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l 230 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSL 230 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEE
T ss_pred cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhhe
Confidence 66666666665555555566666666 566666666654444433 3456666666664 23444444444333322
Q ss_pred CCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCC--CccEEEccCCeecccccccccCCCCCcEEEcc
Q 036642 345 SCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFK--NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422 (938)
Q Consensus 345 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 422 (938)
....+.+ +....+. +..+..+. +|++|++++|.+++..+..|..+++|++|+++
T Consensus 231 ~~~~~~~----------------~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 231 WLGTFED----------------MDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp ECCCCTT----------------SCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred echhhcc----------------ccccccC--------hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence 2211110 0000000 11111111 56666666666666555556666666666666
Q ss_pred CccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccC
Q 036642 423 YNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI 502 (938)
Q Consensus 423 ~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 502 (938)
+|.++.+ |..+..+++|++|++++|.+++..|..
T Consensus 287 ~n~l~~l------------------------p~~l~~l~~L~~L~l~~n~l~~~~~~~---------------------- 320 (606)
T 3t6q_A 287 ATHLSEL------------------------PSGLVGLSTLKKLVLSANKFENLCQIS---------------------- 320 (606)
T ss_dssp TSCCSCC------------------------CSSCCSCTTCCEEECTTCCCSBGGGGC----------------------
T ss_pred CCccCCC------------------------ChhhcccccCCEEECccCCcCcCchhh----------------------
Confidence 6665542 333444455555555555444322221
Q ss_pred CCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccch-hhhcC
Q 036642 503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTD-CWMNY 581 (938)
Q Consensus 503 ~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~~~l 581 (938)
+.. +++|++|++++|.+.+.+|. .+..+
T Consensus 321 --~~~-------------------------------------------------l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 321 --ASN-------------------------------------------------FPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp --GGG-------------------------------------------------CTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred --hhc-------------------------------------------------cCcCCEEECCCCCcccccchhhhhcc
Confidence 122 22233333333333322221 23344
Q ss_pred CCCCEEEcCCCcccccC--CcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccE
Q 036642 582 QNLMILDLSNNKFTGNL--PISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVV 658 (938)
Q Consensus 582 ~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~ 658 (938)
++|++|++++|.+++.. |..+..+++|++|++++|++.+..+ .+..+++|++|++++|++.+..|...+..+++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 44444444444444332 3444445555555555555544444 44555555555555555554444432235666666
Q ss_pred EeeCCCcccccCCccccCCCccCeeeccccccccccc---hhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccc
Q 036642 659 LILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP---RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED 735 (938)
Q Consensus 659 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (938)
|++++|++++..|..+..+++|+.|++++|++++..+ ..+..+++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~-------------------------------- 477 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR-------------------------------- 477 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT--------------------------------
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC--------------------------------
Confidence 6666666666667777777888888888887775322 33444433
Q ss_pred eeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642 736 ALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE 815 (938)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 815 (938)
|+.|++++|++++.+|..++.+++|+.|+|++|++++.+|+.++++++| .||+++|++++.
T Consensus 478 ------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 478 ------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp ------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred ------------------ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 3788999999998888999999999999999999999999999999999 999999999998
Q ss_pred CCccccCCCCCCeEeCcCCcccccCCCCC
Q 036642 816 IPQSMSSLTYLNHLNLSNNNLTGKIPSST 844 (938)
Q Consensus 816 ip~~l~~l~~L~~L~ls~N~l~g~ip~~~ 844 (938)
.|..+..+++|+++++++|++.|.++..+
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 567 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNPLDCTCSNIY 567 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred CHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence 88889999999999999999999888543
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-54 Score=533.81 Aligned_cols=245 Identities=21% Similarity=0.248 Sum_probs=163.6
Q ss_pred CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECC
Q 036642 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG 637 (938)
Q Consensus 558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls 637 (938)
++|++|++++|++++..+..|.++++|+.|++++|.+++ ++ .+++|+.|++++|+++..+.. ..+++.|+++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls 409 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVTLPKI---NLTANLIHLS 409 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCCCCCCC---CTTCCEEECC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCccccccc---ccccceeecc
Confidence 344444444444444444445555555555555555542 11 245566666666665532211 3456666666
Q ss_pred CCccCCCCChhHhhhcCcccEEeeCCCcccccCCc-cccCCCccCeeecccccccccc-----chhhhcchhhhhccccc
Q 036642 638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK-GLCDLAFLQIVDLADNNLSGEV-----PRCIHNLRAMVTLNSHA 711 (938)
Q Consensus 638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~l~~~~ 711 (938)
+|++.+.-.......+++|++|++++|++++..+. .+..+++|+.|++++|.+++.. |..|..+
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l---------- 479 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL---------- 479 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB----------
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc----------
Confidence 66665532222222577777888888877765433 3455788888899888887332 2333333
Q ss_pred cchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCccc
Q 036642 712 GKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGR 791 (938)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ 791 (938)
+.|+.|||++|++++.+|..+..+++|+.|+|++|++++.
T Consensus 480 ----------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 480 ----------------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp ----------------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred ----------------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 3347889999999988888899999999999999999987
Q ss_pred CCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcCCC-CCCCCCCCCCCC
Q 036642 792 IPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAPLPRNCS 869 (938)
Q Consensus 792 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~~~~c~ 869 (938)
.|..+. ++|+.|||++|++++.+|..+. +|+++++++|++.|.|+..+..+++ ..++ .+||.+....|.
T Consensus 520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~~~~----~~~~~~~~~~~~~~~C~ 589 (844)
T 3j0a_A 520 SHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWL----NHTNVTIAGPPADIYCV 589 (844)
T ss_dssp CCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHHHHH----HHTTTTTCCCGGGCCCS
T ss_pred Chhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccHHHHHHH----HhcCcccccccccCccC
Confidence 777776 8999999999999999998765 6889999999999999864433322 2334 566666555674
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-53 Score=509.60 Aligned_cols=533 Identities=18% Similarity=0.150 Sum_probs=365.5
Q ss_pred ccceeeCCC---------CCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccc
Q 036642 68 WAGVVCDNV---------TGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFI 138 (938)
Q Consensus 68 w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l 138 (938)
+..|.|... ...++.+++++. .+.+..|..|.++++|++|+|++|.++++ .|..+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n---------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~ 77 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFN---------------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTF 77 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTC---------------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTT
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCC---------------ccCcCChhHhccCccceEEECCCCcccee-Chhhc
Confidence 445777542 236788898883 66666678999999999999999999975 68889
Q ss_pred cCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCC
Q 036642 139 CSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSL 218 (938)
Q Consensus 139 ~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L 218 (938)
+++++|++|+|++|++++..|..|+++++|++|++++|.+....+..+.++++|++|++++|.++.++. ..+..+++|
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L 155 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL--PKGFPTEKL 155 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC--CTTCCCTTC
T ss_pred cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc--ccccCCccc
Confidence 999999999999999999999999999999999999999998877778888888888887777766421 112224555
Q ss_pred cEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCC--EEEccCCcccCCCCccccCCCCCCEEEC
Q 036642 219 VKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLV--FLDLRRNNFQGPIPEGLQNLTSLKHLLL 296 (938)
Q Consensus 219 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L 296 (938)
++|++++|.++++.+. .+..+++|+ .|++++|.+++..|..+. ..+|++|++
T Consensus 156 ~~L~L~~n~l~~~~~~-------------------------~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l 209 (606)
T 3t6q_A 156 KVLDFQNNAIHYLSKE-------------------------DMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNF 209 (606)
T ss_dssp CEEECCSSCCCEECHH-------------------------HHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEEC
T ss_pred CEEEcccCcccccChh-------------------------hhhhhcccceeEEecCCCccCccChhHhh-hcccccccc
Confidence 5555555555444444 444555555 555555555544444333 346666776
Q ss_pred cCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCC
Q 036642 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGS 376 (938)
Q Consensus 297 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 376 (938)
++|. .++..+..+.+++...+.-..+. .+....+....+.+. ...+++.+++++|
T Consensus 210 ~~~~---~~~~~~~~l~~~~l~~l~~~~~~-----------~~~~~~i~~~~~~~l-----------~~~~L~~L~l~~n 264 (606)
T 3t6q_A 210 GGTQ---NLLVIFKGLKNSTIQSLWLGTFE-----------DMDDEDISPAVFEGL-----------CEMSVESINLQKH 264 (606)
T ss_dssp TTCS---CHHHHHHHTTTCEEEEEECCCCT-----------TSCCCCCCGGGGGGG-----------GGSEEEEEECTTC
T ss_pred CCch---hHHHHhhhccccchhheechhhc-----------cccccccChhHhchh-----------hcCceeEEEeecC
Confidence 6665 34555555555544444332221 111111221111111 1116888889999
Q ss_pred cCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcc
Q 036642 377 SVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSW 456 (938)
Q Consensus 377 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~ 456 (938)
.+++..+..++.+++|++|++++|+++ .+|..+..+++|++|++++|.+++. .|..
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~-----------------------~~~~ 320 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL-----------------------CQIS 320 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG-----------------------GGGC
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC-----------------------chhh
Confidence 888888888999999999999999998 6788899999999999999988763 4556
Q ss_pred cCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEE
Q 036642 457 LHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELD 536 (938)
Q Consensus 457 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ 536 (938)
+..+++|++|++++|.+.+.+|...+..+++|++|++++|.
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--------------------------------------- 361 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD--------------------------------------- 361 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC---------------------------------------
T ss_pred hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc---------------------------------------
Confidence 77778888888888877655554433333333333333333
Q ss_pred ccCCccccccchhhhhhhccCCCcceeeccCccCCCcc--chhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcc
Q 036642 537 FSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGEL--TDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 614 (938)
Q Consensus 537 ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 614 (938)
+++.. +..+..+++|++|++++|++.+..|..+..+++|+.|+++
T Consensus 362 ---------------------------------l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 362 ---------------------------------IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp ---------------------------------CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred ---------------------------------cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 22221 2334444444455555554444444445555555555555
Q ss_pred ccccccccc--ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCccccc---CCccccCCCccCeeeccccc
Q 036642 615 KNNLSGTIH--SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSL---LPKGLCDLAFLQIVDLADNN 689 (938)
Q Consensus 615 ~n~l~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~Ls~N~ 689 (938)
+|++++..+ .+.++++|++|++++|.+.+..|..+. .+++|++|++++|++++. .+..+..+++|+.|++++|+
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 555544433 245555555555555555554554444 466666666666666552 33567788889999999999
Q ss_pred cccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCc
Q 036642 690 LSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP 769 (938)
Q Consensus 690 l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip 769 (938)
+++..|..+..+++| +.|||++|++++.+|
T Consensus 488 l~~~~~~~~~~l~~L--------------------------------------------------~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMM--------------------------------------------------NHVDLSHNRLTSSSI 517 (606)
T ss_dssp CCEECTTTTTTCTTC--------------------------------------------------CEEECCSSCCCGGGG
T ss_pred cCccChhhhccccCC--------------------------------------------------CEEECCCCccCcCCh
Confidence 888888887776665 688999999999999
Q ss_pred hhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCC
Q 036642 770 LEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIP 817 (938)
Q Consensus 770 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip 817 (938)
..+.+++.| .|+|++|++++.+|+.++.+++|+.||+++|++.+..+
T Consensus 518 ~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999 99999999999999999999999999999999998665
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-53 Score=509.72 Aligned_cols=545 Identities=20% Similarity=0.175 Sum_probs=343.2
Q ss_pred EEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCC
Q 036642 121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV 200 (938)
Q Consensus 121 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 200 (938)
+++.+++.++ .+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 15 ~~~c~~~~l~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLS--KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCS--SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCcc--cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3444444444 2343332 44555555555555444445555555555555555555544445555555555555555
Q ss_pred CCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCC
Q 036642 201 NLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGP 280 (938)
Q Consensus 201 ~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 280 (938)
.++... +..+.++++|++|++++|.++++++..++++++|++|++++|.+.+..+|..++++++|++|++++|.+++.
T Consensus 91 ~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFS--PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCC--TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cccccC--hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 554432 245566666777777777777777667788888888888888877644477888888888888888888877
Q ss_pred CCccccCCCCCC----EEECcCCcCCCccchhhhcCCCCCEEEccCCcCC-chhhHhhhccCCCCeeecCCCcCccchhh
Q 036642 281 IPEGLQNLTSLK----HLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ-GRVIRSMASLCNLRSVMLSCVKLSQEISE 355 (938)
Q Consensus 281 ~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 355 (938)
.|..++.+++|+ +|++++|.+++..+..+.. .+|++|++++|.+. +..+..+.+++.|+.+++..+.+.+..
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-- 245 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER-- 245 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCC--
Confidence 777676665544 7888888887655554444 48888888888887 456677888888887777654433210
Q ss_pred HHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEc-cCCeecccccccccCCCCCcEEEccCccCCCCCCCCC
Q 036642 356 IFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDL-SNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI 434 (938)
Q Consensus 356 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 434 (938)
.++. +....+..+..+ .++.+++ ..+.+.+.+|. +..+++|++|++++|.+..++
T Consensus 246 -----------~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~---- 301 (606)
T 3vq2_A 246 -----------NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE---- 301 (606)
T ss_dssp -----------CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC----
T ss_pred -----------cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchhhh----
Confidence 0000 001111112222 3555666 55666666665 667777777777777665432
Q ss_pred CccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCcee
Q 036642 435 PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 514 (938)
Q Consensus 435 ~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L 514 (938)
.+..+++|++|++++|.+ +.+|.. .+++|+.|++++|...+
T Consensus 302 ---------------------~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~-------------- 342 (606)
T 3vq2_A 302 ---------------------DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSI-------------- 342 (606)
T ss_dssp ---------------------CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCE--------------
T ss_pred ---------------------hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCcc--------------
Confidence 233444444444444444 233311 23333333333331111
Q ss_pred ecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCc--cchhhhcCCCCCEEEcCCC
Q 036642 515 SLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE--LTDCWMNYQNLMILDLSNN 592 (938)
Q Consensus 515 ~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n 592 (938)
.. .+..+++|++|++++|++++. +|..+..+++|++|++++|
T Consensus 343 ---------~~---------------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 343 ---------SF---------------------------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp ---------EC---------------------------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred ---------ch---------------------------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence 00 112345555555555555543 2455555555555555555
Q ss_pred cccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCc
Q 036642 593 KFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK 672 (938)
Q Consensus 593 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~ 672 (938)
.+++ +|..+..+++|+.|++++|++ .+..|...+..+++|++|++++|++++..|.
T Consensus 387 ~l~~-~~~~~~~l~~L~~L~l~~n~l-----------------------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 387 GAII-MSANFMGLEELQHLDFQHSTL-----------------------KRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp SEEE-ECCCCTTCTTCCEEECTTSEE-----------------------ESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccc-chhhccCCCCCCeeECCCCcc-----------------------CCccChhhhhccccCCEEECcCCCCCccchh
Confidence 5553 334455555555555555544 4444422222566667777777777777777
Q ss_pred cccCCCccCeeeccccccccc-cchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhc
Q 036642 673 GLCDLAFLQIVDLADNNLSGE-VPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCIL 751 (938)
Q Consensus 673 ~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (938)
.+..+++|+.|++++|++++. +|..++.+++|
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----------------------------------------------- 475 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL----------------------------------------------- 475 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----------------------------------------------
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-----------------------------------------------
Confidence 777888888888888888873 67777766655
Q ss_pred cceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCC-CCCeEe
Q 036642 752 NLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT-YLNHLN 830 (938)
Q Consensus 752 ~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ 830 (938)
+.|++++|++++.+|..++++++|+.|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|++|+
T Consensus 476 ---~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 476 ---TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN 551 (606)
T ss_dssp ---CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred ---CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEE
Confidence 67889999999888889999999999999999999999999999999999999999999 6888899987 599999
Q ss_pred CcCCcccccCCCCCcCCC
Q 036642 831 LSNNNLTGKIPSSTQLQS 848 (938)
Q Consensus 831 ls~N~l~g~ip~~~~~~~ 848 (938)
+++|++.|.+|..+..++
T Consensus 552 l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 552 LTNNSVACICEHQKFLQW 569 (606)
T ss_dssp CCSCCCCCSSTTHHHHTT
T ss_pred ccCCCcccCCccHHHHHH
Confidence 999999999886543333
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-51 Score=489.07 Aligned_cols=529 Identities=20% Similarity=0.168 Sum_probs=409.3
Q ss_pred ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL 186 (938)
Q Consensus 107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~ 186 (938)
..+|..+. +++++|+|++|.+++. .+..+.++++|++|++++|.+++..|..|+++++|++|++++|.+....+..|
T Consensus 24 ~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 24 SKVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp SSCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred ccCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 45666555 6899999999999964 56689999999999999999998889999999999999999999999989999
Q ss_pred CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCC-cccccCCCCCCEEECCCCCCCCccCcccccCCC
Q 036642 187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP-PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLI 265 (938)
Q Consensus 187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 265 (938)
.++++|++|++++|.++..+. ..++++++|++|++++|.+++.. |..++++++|++|++++|.+++.. +..++.++
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 177 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT-VNDLQFLR 177 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC-TTTTHHHH
T ss_pred CCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC-hhhhhhhh
Confidence 999999999999999988754 35889999999999999999754 789999999999999999998754 66666665
Q ss_pred CC----CEEEccCCcccCCCCccccCCCCCCEEECcCCcCC-CccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCC
Q 036642 266 QL----VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN-SSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR 340 (938)
Q Consensus 266 ~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 340 (938)
+| ++|++++|.+++..+..+.. .+|++|++++|.++ +..|..+.+++.|+.+++..+.+.+. ..+.
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--------~~l~ 248 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE--------RNLE 248 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS--------CCCS
T ss_pred ccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccC--------Cccc
Confidence 55 48999999999665555544 49999999999987 46788899999999999876654321 1111
Q ss_pred eeecCCCcCccchhhHHHhhhcccccCccEEEc-cCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEE
Q 036642 341 SVMLSCVKLSQEISEIFDIFSGCVSSGLEILVL-RGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFI 419 (938)
Q Consensus 341 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 419 (938)
.+ ....+. .+.. -.++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|++|
T Consensus 249 ~~-------~~~~~~----~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L 312 (606)
T 3vq2_A 249 IF-------EPSIME----GLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSL 312 (606)
T ss_dssp CC-------CGGGGT----TGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEE
T ss_pred cc-------ChHHhh----hhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEE
Confidence 11 000110 1111 15667777 66777777777 8899999999999999974 55 88889999999
Q ss_pred EccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEeccccccc
Q 036642 420 DLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH 499 (938)
Q Consensus 420 ~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 499 (938)
++++|.+..+ |. + .+++|++|++++|...+.++ +..+++|++|++++|.++
T Consensus 313 ~l~~n~l~~l------------------------p~-~-~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 313 SIIRCQLKQF------------------------PT-L-DLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEESCCCSSC------------------------CC-C-CCSSCCEEEEESCSSCEECC---CCCCTTCCEEECCSSCEE
T ss_pred EcccccCccc------------------------cc-C-CCCccceeeccCCcCccchh---hccCCCCCEEECcCCccC
Confidence 9999988543 42 3 66777777777775543332 123444444444444443
Q ss_pred ccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh
Q 036642 500 GQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM 579 (938)
Q Consensus 500 ~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~ 579 (938)
+.. .....+..+++|++|++++|.+++ +|..+.
T Consensus 364 ~~~----------------------------------------------~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~ 396 (606)
T 3vq2_A 364 FSG----------------------------------------------CCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396 (606)
T ss_dssp EEE----------------------------------------------ECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred CCc----------------------------------------------chhhhhccCCcccEeECCCCcccc-chhhcc
Confidence 210 001334568899999999999985 668899
Q ss_pred cCCCCCEEEcCCCcccccCC-cccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCccc
Q 036642 580 NYQNLMILDLSNNKFTGNLP-ISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMV 657 (938)
Q Consensus 580 ~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~ 657 (938)
.+++|+.|++++|++.+..| ..+..+++|++|++++|.+++.++ .+.++++|++|++++|++.+.
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------- 463 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN------------- 463 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-------------
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc-------------
Confidence 99999999999999998877 678888888888888888877665 555555555555555554331
Q ss_pred EEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhccccee
Q 036642 658 VLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDAL 737 (938)
Q Consensus 658 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (938)
.+|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 464 -----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------- 499 (606)
T 3vq2_A 464 -----------TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL--------------------------------- 499 (606)
T ss_dssp -----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------
T ss_pred -----------chHHhhccCCCCCEEECCCCcCCccChhhhcccccC---------------------------------
Confidence 256667777888888888888887777777766655
Q ss_pred eeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccC-CCCEEECCCCcccccC
Q 036642 738 VVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMR-SLESIDFSLNQLSGEI 816 (938)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~-~L~~LdLs~N~l~~~i 816 (938)
+.|++++|++++.+|..++++++|+.|+|++|+++ .+|..+..++ +|+.|++++|++.+..
T Consensus 500 -----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 500 -----------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp -----------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred -----------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 67888888888888999999999999999999999 7888899986 6999999999999865
Q ss_pred C
Q 036642 817 P 817 (938)
Q Consensus 817 p 817 (938)
+
T Consensus 562 ~ 562 (606)
T 3vq2_A 562 E 562 (606)
T ss_dssp T
T ss_pred c
Confidence 5
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-52 Score=500.89 Aligned_cols=513 Identities=18% Similarity=0.207 Sum_probs=346.8
Q ss_pred CcHHHHHHHHHhhhcCCCCCC--------CCCCCCCCCCCccc---cceeeCCCCCcEEEEecCCCCCccCCccCCCCCC
Q 036642 34 CLESERRALLRFKQDLQDPSN--------RLASWIGYEDCCAW---AGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPR 102 (938)
Q Consensus 34 ~~~~~~~~ll~~k~~~~~~~~--------~l~~W~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~ 102 (938)
....|++||.++|+++.++.. ..++|+.+++||.| .||+|+. .|||++|+|++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~--------------- 90 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG--------------- 90 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTT---------------
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecC---------------
Confidence 346799999999999865422 24589866899999 9999986 49999999998
Q ss_pred cccCccccCCccCCCCCCEEeCCCCCCC------C-----CcccccccCCCCCcEEecCCCcCCCCCCcCCCC-CCcccE
Q 036642 103 SMLVGKVNPSLLDLKHLSYLDLSYNDFQ------G-----VQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGN-LSNLQY 170 (938)
Q Consensus 103 ~~~~g~l~~~l~~l~~L~~L~Ls~n~l~------~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-L~~L~~ 170 (938)
..+.|.+|++++++++|++|||++|.+. + ..+|... +.+|+ ++++++.+.+.+|..+.. +.++..
T Consensus 91 ~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~ 167 (636)
T 4eco_A 91 FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCIN 167 (636)
T ss_dssp SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhh
Confidence 4889999999999999999999999762 1 0234333 45667 788888888777766653 223333
Q ss_pred EECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCC
Q 036642 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYN 250 (938)
Q Consensus 171 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n 250 (938)
+++....+... ....++.+.+. ...|
T Consensus 168 ~~l~~~~~~~~--------------------------------~~~~l~~l~l~----------------------~~~n 193 (636)
T 4eco_A 168 SDPQQKSIKKS--------------------------------SRITLKDTQIG----------------------QLSN 193 (636)
T ss_dssp HCTTSCCCCCC--------------------------------CCCCCCTTTTT----------------------CCSC
T ss_pred cCccccccccc--------------------------------cccchhhhhhc----------------------cccC
Confidence 33322211100 00011111111 0123
Q ss_pred CCCCccCcccccCCCCCCEEEccCCcccCC-----------------CCcccc--CCCCCCEEECcCCcCCCccchhhhc
Q 036642 251 QFDNSFVPNWVFGLIQLVFLDLRRNNFQGP-----------------IPEGLQ--NLTSLKHLLLDSNRFNSSIPNWLYR 311 (938)
Q Consensus 251 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~ 311 (938)
++++ + |..++++++|++|+|++|.+++. +|+.++ ++++|++|++++|.+.+.+|..+++
T Consensus 194 ~l~~-i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITF-V-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp EEEE-E-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCcc-C-CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 3333 2 44444444444444444444443 666666 6777777777777766667766777
Q ss_pred CCCCCEEEccCCc-CCc-hhhHhhhcc------CCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccc
Q 036642 312 FNRLESLGVSNNS-LQG-RVIRSMASL------CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLT 383 (938)
Q Consensus 312 l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 383 (938)
+++|++|++++|+ +++ .+|..++.+ ++|+.|++++|.++ .+|.. ..++.++ +|++|++++|.+.|.+|
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~--~~l~~l~-~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE--TSLQKMK-KLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH--HHHTTCT-TCCEEECCSCCCEEECC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch--hhhccCC-CCCEEeCcCCcCccchh
Confidence 7777777777776 666 666666665 67777777777776 34430 0223344 67777777777777777
Q ss_pred cccCCCCCccEEEccCCeecccccccccCCCC-CcEEEccCccCCCCCCCCCCcc--ccceeecccccCCCCCCcccC--
Q 036642 384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLST-LQFIDLSYNELNGMNDNWIPPF--QLATLGLRHCHLGSRFPSWLH-- 458 (938)
Q Consensus 384 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~--~L~~L~L~~~~l~~~~p~~l~-- 458 (938)
.++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++.+|..+.... +|+.|++++|.+.+..|..+.
T Consensus 348 -~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp -CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred -hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 7888889999999999988 77888888888 9999999999887776555433 677777877777777777776
Q ss_pred -----CCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCc
Q 036642 459 -----SQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLI 533 (938)
Q Consensus 459 -----~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~ 533 (938)
.+++|++|++++|.++ .+|..++..+++|+.|++++|+++...+......
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~------------------------ 480 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE------------------------ 480 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET------------------------
T ss_pred ccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc------------------------
Confidence 6667777777777777 5666665666666666666666652221111000
Q ss_pred EEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh--cCCCCCEEEcCCCcccccCCcccCCCCCCcEE
Q 036642 534 ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM--NYQNLMILDLSNNKFTGNLPISLGSLISLQSL 611 (938)
Q Consensus 534 ~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 611 (938)
...+.++++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|
T Consensus 481 -----------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L 541 (636)
T 4eco_A 481 -----------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541 (636)
T ss_dssp -----------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred -----------------cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence 001123457888888888888 5777775 78888888888888886 78888888888888
Q ss_pred EcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccc
Q 036642 612 HLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691 (938)
Q Consensus 612 ~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 691 (938)
+|++|+ ++++|++.+.+|.++. .+++|++|++++|++ +.+|..+. ++|+.|++++|++.
T Consensus 542 ~Ls~N~-----------------~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 542 GIRNQR-----------------DAQGNRTLREWPEGIT-LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp ECCSCB-----------------CTTCCBCCCCCCTTGG-GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred ECCCCc-----------------ccccCcccccChHHHh-cCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 887765 4567777777777776 577888888888887 55676655 68888888888776
Q ss_pred c
Q 036642 692 G 692 (938)
Q Consensus 692 ~ 692 (938)
.
T Consensus 601 ~ 601 (636)
T 4eco_A 601 S 601 (636)
T ss_dssp E
T ss_pred c
Confidence 3
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-50 Score=498.57 Aligned_cols=529 Identities=22% Similarity=0.223 Sum_probs=322.1
Q ss_pred ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCC-CcCCCCCCcccEEECCCCcccccCccc
Q 036642 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMI-PPQLGNLSNLQYLDLSWNFLYVENLWW 185 (938)
Q Consensus 107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~L~~L~~L~Ls~n~i~~~~~~~ 185 (938)
..+|. -.++|++|||++|.++++ .|..+.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+....+..
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCC---CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 34555 346889999999998864 6778889999999999998665555 778899999999999999888888888
Q ss_pred cCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc-ccccCCCCCCEEECCCCCCCCccCcccccCC
Q 036642 186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP-LAIANFSTLTTLDLLYNQFDNSFVPNWVFGL 264 (938)
Q Consensus 186 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 264 (938)
|.++++|++|++++|.+++.......+..+++|++|++++|.+++..+ ..|+++++|++|++++|.+++.. +..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccc
Confidence 888888888888888877532112236677777777777777776654 45677777777777777766544 5555555
Q ss_pred --CCCCEEEccCCcccCCCCccccCCCC------CCEEECcCCcCCCccchhhhcC---CCCCEEEccCCcCCchhhHhh
Q 036642 265 --IQLVFLDLRRNNFQGPIPEGLQNLTS------LKHLLLDSNRFNSSIPNWLYRF---NRLESLGVSNNSLQGRVIRSM 333 (938)
Q Consensus 265 --~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~~~~l 333 (938)
++|+.|++++|.+.+..|..+..+++ |++|++++|.+++..+..+... .+++.+.++.+.+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~------ 245 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA------ 245 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC------
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc------
Confidence 66777777777766666655555444 6666666666655555544432 345555554332211
Q ss_pred hccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCC
Q 036642 334 ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413 (938)
Q Consensus 334 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 413 (938)
.+..+.+.+..... +.+...++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+
T Consensus 246 ---------~~~~~~l~~~~~~~---f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 313 (844)
T 3j0a_A 246 ---------GFGFHNIKDPDQNT---FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313 (844)
T ss_dssp ---------SSSCSSSTTGGGTT---TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred ---------cccccccCCCChhh---hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence 01112222211111 001111245555555555555555555555555555555555555444455555
Q ss_pred CCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEec
Q 036642 414 STLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDL 493 (938)
Q Consensus 414 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 493 (938)
++|++|++++|.+++ ..|..+..+++|+.|++++|.+.+..+.
T Consensus 314 ~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~-------------- 356 (844)
T 3j0a_A 314 DNLQVLNLSYNLLGE-----------------------LYSSNFYGLPKVAYIDLQKNHIAIIQDQ-------------- 356 (844)
T ss_dssp SSCCEEEEESCCCSC-----------------------CCSCSCSSCTTCCEEECCSCCCCCCCSS--------------
T ss_pred CCCCEEECCCCCCCc-----------------------cCHHHhcCCCCCCEEECCCCCCCccChh--------------
Confidence 555555555554443 2334444444455555444444322111
Q ss_pred ccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCc
Q 036642 494 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE 573 (938)
Q Consensus 494 s~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 573 (938)
.+..+++|++|++++|.+++. ..+++|+.|++++|+++ .
T Consensus 357 ----------~~~~l~~L~~L~Ls~N~l~~i------------------------------~~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 357 ----------TFKFLEKLQTLDLRDNALTTI------------------------------HFIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp ----------CSCSCCCCCEEEEETCCSCCC------------------------------SSCCSCSEEEEESCCCC-C
T ss_pred ----------hhcCCCCCCEEECCCCCCCcc------------------------------cCCCCcchhccCCCCcc-c
Confidence 223333333333333333211 01344555555555555 2
Q ss_pred cchhhhcCCCCCEEEcCCCcccccCC-cccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhh
Q 036642 574 LTDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGER 652 (938)
Q Consensus 574 ~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 652 (938)
+|.. ..+++.|++++|++++... ..+..+++|+.|+|++|++++..+ ......
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~~~~ 449 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG-----------------------DQTPSE 449 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS-----------------------SSSSCS
T ss_pred cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc-----------------------cccccc
Confidence 2322 3456666666666654211 123355556666666655554332 211113
Q ss_pred cCcccEEeeCCCccc-----ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCc
Q 036642 653 FSRMVVLILRSNKFH-----SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAP 727 (938)
Q Consensus 653 l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 727 (938)
+++|+.|++++|.++ +..+..|..+++|+.|+|++|++++..|..|..+++|
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------- 506 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL----------------------- 506 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-----------------------
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-----------------------
Confidence 455555555555554 3345677888999999999999998888877777665
Q ss_pred chhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEEC
Q 036642 728 STAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDF 807 (938)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdL 807 (938)
+.|||++|++++..|..+. ++|+.|+|++|++++.+|+.|. +|+.|++
T Consensus 507 ---------------------------~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l 554 (844)
T 3j0a_A 507 ---------------------------RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDI 554 (844)
T ss_dssp ---------------------------SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEE
T ss_pred ---------------------------heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEe
Confidence 7889999999976666555 8999999999999999998764 7899999
Q ss_pred CCCcccccCC
Q 036642 808 SLNQLSGEIP 817 (938)
Q Consensus 808 s~N~l~~~ip 817 (938)
++|++.+..+
T Consensus 555 ~~Np~~C~c~ 564 (844)
T 3j0a_A 555 THNKFICECE 564 (844)
T ss_dssp EEECCCCSSS
T ss_pred cCCCcccccc
Confidence 9999998654
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-50 Score=485.73 Aligned_cols=521 Identities=18% Similarity=0.200 Sum_probs=274.3
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCC-----CC--ccc------------cceeeCCCCCcEEEEecCCCCCcc
Q 036642 32 VGCLESERRALLRFKQDLQDPSNRLASWIGYE-----DC--CAW------------AGVVCDNVTGHIVELNLRNPFTYC 92 (938)
Q Consensus 32 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~L~~~~~~~ 92 (938)
.++..+|++||++||+++.+| +|+.+. +| |.| .||+|+. .+||+.|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence 345678999999999999876 675422 45 999 9999986 79999999998
Q ss_pred CCccCCCCCCcccCccccCCccCCCCCCEEeC-CCCCCCCCcccccccCC-CCCc-----EE---------ec-CCCcC-
Q 036642 93 DLSQSKANPRSMLVGKVNPSLLDLKHLSYLDL-SYNDFQGVQIPRFICSM-GNLR-----YL---------NL-SYTQF- 154 (938)
Q Consensus 93 ~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~L-s~n~l~~~~~p~~l~~l-~~L~-----~L---------~L-s~n~l- 154 (938)
..+.|.+|+++++|++|++||| ++|.+.+. .|...... ..+. .+ +. ....+
T Consensus 333 ----------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 333 ----------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp ----------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred ----------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 4899999999999999999999 88877653 22110000 0000 00 00 00000
Q ss_pred ----------CCCCCcCCCCCCcccEEECCC--CcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEE
Q 036642 155 ----------VGMIPPQLGNLSNLQYLDLSW--NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR 222 (938)
Q Consensus 155 ----------~~~~p~~~~~L~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 222 (938)
....+........++.+.+.. |.+.. -+..+.++++|++|+|++|.+++..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~---------------- 464 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDN---------------- 464 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGG----------------
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCc----------------
Confidence 000111111222233333332 44444 2333444444444444444443310
Q ss_pred cCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCccccc--CCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCc
Q 036642 223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF--GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNR 300 (938)
Q Consensus 223 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 300 (938)
++. .+. ..+.|...+.+ |..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|+
T Consensus 465 --------i~~-~~~--------~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 465 --------IAV-DWE--------DANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp --------BSS-SCS--------CTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred --------ccc-ccc--------ccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 000 000 00001111112 44433 44555555555555555555555555555555555554
Q ss_pred -CCC-ccchhhhcCC-------CCCEEEccCCcCCchhhH--hhhccCCCCeeecCCCcCccchhhHHHhhhcccccCcc
Q 036642 301 -FNS-SIPNWLYRFN-------RLESLGVSNNSLQGRVIR--SMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLE 369 (938)
Q Consensus 301 -l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~ 369 (938)
+++ .+|..++.++ +|++|++++|.++ .+|. .++++++|+.|++++|.+
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l-------------------- 585 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV-------------------- 585 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC--------------------
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc--------------------
Confidence 444 4444444333 5555555555554 3333 444444444444444433
Q ss_pred EEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCC-CcEEEccCccCCCCCCCCCCcc--ccceeeccc
Q 036642 370 ILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLST-LQFIDLSYNELNGMNDNWIPPF--QLATLGLRH 446 (938)
Q Consensus 370 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~--~L~~L~L~~ 446 (938)
+ .+| .++.+++|+.|++++|+++ .+|..+..+++ |++|++++|.++.+|..+.... +|+.|++++
T Consensus 586 ---------~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 586 ---------R-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp ---------C-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCS
T ss_pred ---------c-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcC
Confidence 3 333 4555666666666666666 55555666666 6666666666665544333322 255555555
Q ss_pred ccCCCCCCcc---cC--CCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccC
Q 036642 447 CHLGSRFPSW---LH--SQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSF 521 (938)
Q Consensus 447 ~~l~~~~p~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l 521 (938)
|.+.+.+|.. +. .+++|+.|++++|.++ .+|..++..+++|+.|++++|+++...+.+....
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~------------ 720 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPK------------ 720 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT------------
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccc------------
Confidence 5554444322 12 2346777777777777 6666666666677777777776663222211100
Q ss_pred ccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh--cCCCCCEEEcCCCcccccCC
Q 036642 522 SGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM--NYQNLMILDLSNNKFTGNLP 599 (938)
Q Consensus 522 ~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p 599 (938)
...+.++++|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|
T Consensus 721 -----------------------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 721 -----------------------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FP 769 (876)
T ss_dssp -----------------------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred -----------------------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cc
Confidence 000123446666777777666 5566665 67777777777777775 56
Q ss_pred cccCCCCCCcEEEccc------cccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCc
Q 036642 600 ISLGSLISLQSLHLRK------NNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK 672 (938)
Q Consensus 600 ~~~~~l~~L~~L~L~~------n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~ 672 (938)
..+..+++|+.|+|++ |++.+.+| .+.++++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+.
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCEEECG
T ss_pred hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCccChH
Confidence 6677777777777765 44444444 455555555555555555 44444432 3455555555555444444
Q ss_pred cccCCCccCeeecccccc
Q 036642 673 GLCDLAFLQIVDLADNNL 690 (938)
Q Consensus 673 ~l~~l~~L~~L~Ls~N~l 690 (938)
.++....+..+.+.+|+.
T Consensus 846 ~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 846 SVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp GGHHHHHTTCCEEECCTT
T ss_pred HccccccchheeecCCCc
Confidence 444333444444444433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9e-48 Score=456.25 Aligned_cols=501 Identities=21% Similarity=0.203 Sum_probs=281.8
Q ss_pred CCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeC
Q 036642 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL 197 (938)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 197 (938)
++++|||++|.++++ .+..+.++++|++|++++|++++..|..|+++++|++|++++|++....+..
T Consensus 29 ~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------ 95 (570)
T 2z63_A 29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA------------ 95 (570)
T ss_dssp SCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT------------
T ss_pred cccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh------------
Confidence 455555555555542 2334555555555555555555544555555555555555555554444333
Q ss_pred CCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcc
Q 036642 198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277 (938)
Q Consensus 198 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 277 (938)
+.++++|++|++++|+++++++..++++++|++|++++|.+.+..+|..+.++++|++|++++|.+
T Consensus 96 --------------~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 96 --------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp --------------TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred --------------hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 445555555555555555555555666777777777777666533366677777777777777777
Q ss_pred cCCCCccccCCCCC----CEEECcCCcCCCccchhhhcCCCCCEEEccCCcCC-chhhHhhhccCCCCeeecCCCcCccc
Q 036642 278 QGPIPEGLQNLTSL----KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ-GRVIRSMASLCNLRSVMLSCVKLSQE 352 (938)
Q Consensus 278 ~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~ 352 (938)
++..+..++.+++| ++|++++|.+++..|..+... +|++|++++|... ...+..+..++.++...+....+...
T Consensus 162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred ceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 76666666666666 677777777776666665544 6777777777443 23455566666665554432221110
Q ss_pred hhhHHHhhhcccccCccEEEccCCcCccccccccCCCC--CccEEEccCC-eecccccccccCCCCCcEEEccCccCCCC
Q 036642 353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFK--NLYYLDLSNN-SIVGPIPFSLGHLSTLQFIDLSYNELNGM 429 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 429 (938)
. .++ .+. ...+..++ .++.++++++ .+.+..|..+..+++|++|++++|.++++
T Consensus 241 ~-------------~l~--~~~--------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 297 (570)
T 2z63_A 241 G-------------NLE--KFD--------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297 (570)
T ss_dssp S-------------SCE--ECC--------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSC
T ss_pred h-------------hhh--hcc--------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhh
Confidence 0 111 001 11111111 2455566655 55556666666666666666666665543
Q ss_pred CCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccc
Q 036642 430 NDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAA 509 (938)
Q Consensus 430 ~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~ 509 (938)
|.++..+ +|++|++++|.+. .+|. ..+
T Consensus 298 ------------------------~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l------------------------ 324 (570)
T 2z63_A 298 ------------------------KDFSYNF-GWQHLELVNCKFG-QFPT---LKL------------------------ 324 (570)
T ss_dssp ------------------------CBCCSCC-CCSEEEEESCBCS-SCCB---CBC------------------------
T ss_pred ------------------------hhhhccC-CccEEeeccCccc-ccCc---ccc------------------------
Confidence 2223333 4444444444333 1111 011
Q ss_pred cCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEc
Q 036642 510 QLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL 589 (938)
Q Consensus 510 ~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 589 (938)
++|++|++++|.+.+..+. ..+++|++|++
T Consensus 325 ------------------------------------------------~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l 354 (570)
T 2z63_A 325 ------------------------------------------------KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDL 354 (570)
T ss_dssp ------------------------------------------------SSCCEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred ------------------------------------------------cccCEEeCcCCcccccccc--ccCCCCCEEeC
Confidence 2222222222222222211 22333333333
Q ss_pred CCCcccccC--CcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCccc
Q 036642 590 SNNKFTGNL--PISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFH 667 (938)
Q Consensus 590 s~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 667 (938)
++|++++.. |..+..+++|++|++++|.+++.++.+..+++|++|++++|.+.+..|.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------------- 414 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-------------------- 414 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS--------------------
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch--------------------
Confidence 333333221 3333444444444444444444333344444444444444444433332
Q ss_pred ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhh
Q 036642 668 SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEY 747 (938)
Q Consensus 668 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (938)
..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 415 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------------------- 447 (570)
T 2z63_A 415 ----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------------------------------------- 447 (570)
T ss_dssp ----CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-------------------------------------------
T ss_pred ----hhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-------------------------------------------
Confidence 123334444444555554444444444444333
Q ss_pred hhhccceeEEEeecCccC-ccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCC
Q 036642 748 KCILNLVRIIDFSKNNFS-GKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYL 826 (938)
Q Consensus 748 ~~~~~~l~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L 826 (938)
+.|++++|+++ +.+|..++.+++|+.|+|++|++++..|..|+.+++|++|++++|++++..|..+.++++|
T Consensus 448 -------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 448 -------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp -------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 45556666665 4677778888999999999999998889999999999999999999999888889999999
Q ss_pred CeEeCcCCcccccCCCCCcC
Q 036642 827 NHLNLSNNNLTGKIPSSTQL 846 (938)
Q Consensus 827 ~~L~ls~N~l~g~ip~~~~~ 846 (938)
++|++++|+++|.+|....+
T Consensus 521 ~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 521 QKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CEEECCSSCBCCCTTTTHHH
T ss_pred cEEEecCCcccCCCcchHHH
Confidence 99999999999999976554
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-46 Score=445.99 Aligned_cols=509 Identities=20% Similarity=0.179 Sum_probs=344.2
Q ss_pred CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEE
Q 036642 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD 271 (938)
Q Consensus 192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 271 (938)
.+.++.++.+++.++. .+ .+++++|++++|+++++++..|.++++|++|++++|++++.. +..+.++++|++|+
T Consensus 9 ~~~~~c~~~~l~~ip~---~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~ 82 (570)
T 2z63_A 9 NITYQCMELNFYKIPD---NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLI 82 (570)
T ss_dssp TTEEECCSSCCSSCCS---SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC-TTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCccccCC---Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC-cccccCchhCCEEe
Confidence 3456666666666543 11 246888888888888887777888888888888888777643 56677778888888
Q ss_pred ccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCc-hhhHhhhccCCCCeeecCCCcCc
Q 036642 272 LRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG-RVIRSMASLCNLRSVMLSCVKLS 350 (938)
Q Consensus 272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~ 350 (938)
+++|.+++..|..+..+++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|+.|++++|.+.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred CcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 88887777666777777888888888887776555567777777777777777765 34666777777777777777666
Q ss_pred cchhhHHHhhhcccccCc----cEEEccCCcCccccccccCCCCCccEEEccCCeecc-cccccccCCCCCcEEEccCcc
Q 036642 351 QEISEIFDIFSGCVSSGL----EILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG-PIPFSLGHLSTLQFIDLSYNE 425 (938)
Q Consensus 351 ~~~~~~~~~~~~~~~~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~ 425 (938)
+..+..+ +.+. +| +.+++++|.+.+..+..+... +|++|++++|.... .++..+..++.++...+....
T Consensus 163 ~~~~~~~----~~l~-~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 163 SIYCTDL----RVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp EECGGGG----HHHH-TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred eecHHHc----cchh-ccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 5544421 1111 22 444444444444444443333 34444444442211 122233333333333332211
Q ss_pred CCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCc
Q 036642 426 LNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNL 505 (938)
Q Consensus 426 l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l 505 (938)
+... ..++ .++...+..+++
T Consensus 237 ~~~~-------------------------------~~l~-----------~~~~~~~~~l~~------------------ 256 (570)
T 2z63_A 237 FRNE-------------------------------GNLE-----------KFDKSALEGLCN------------------ 256 (570)
T ss_dssp CCCC-------------------------------SSCE-----------ECCTTTTGGGGG------------------
T ss_pred ccCc-------------------------------hhhh-----------hcchhhhccccc------------------
Confidence 1110 0000 000000000110
Q ss_pred cccccCceeecCCc-cCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCC
Q 036642 506 TNAAQLEVLSLGSN-SFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584 (938)
Q Consensus 506 ~~~~~L~~L~L~~n-~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 584 (938)
+ .++.++++++ .+.+..| ..+..+++|++|++++|.++ .+|..+..+ +|
T Consensus 257 --l-~l~~l~l~~~~~~~~~~~-------------------------~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L 306 (570)
T 2z63_A 257 --L-TIEEFRLAYLDYYLDDII-------------------------DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GW 306 (570)
T ss_dssp --S-EEEEEEEEETTEEESCST-------------------------TTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CC
T ss_pred --c-chhhhhhhcchhhhhhch-------------------------hhhcCcCcccEEEecCccch-hhhhhhccC-Cc
Confidence 0 1233333333 2222221 22344677777777777777 466667777 88
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCC--ChhHhhhcCcccEEeeC
Q 036642 585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENI--PTWIGERFSRMVVLILR 662 (938)
Q Consensus 585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~~l~~L~~L~L~ 662 (938)
++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++.+.. |..+. .+++|++|+++
T Consensus 307 ~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~ 381 (570)
T 2z63_A 307 QHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLS 381 (570)
T ss_dssp SEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECC
T ss_pred cEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccccccccc-ccCccCEEECC
Confidence 88888888887 5554 4678888888888887765554 67888888888888877643 56665 78999999999
Q ss_pred CCcccccCCccccCCCccCeeeccccccccccc-hhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeec
Q 036642 663 SNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP-RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMK 741 (938)
Q Consensus 663 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (938)
+|++.+..+. +..+++|+.|++++|.+.+..| ..+.++++|
T Consensus 382 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L------------------------------------- 423 (570)
T 2z63_A 382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL------------------------------------- 423 (570)
T ss_dssp SCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-------------------------------------
T ss_pred CCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC-------------------------------------
Confidence 9999886555 9999999999999999997766 345555544
Q ss_pred CcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCc-ccCCccccccCCCCEEECCCCcccccCCccc
Q 036642 742 GRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT-GRIPESIGAMRSLESIDFSLNQLSGEIPQSM 820 (938)
Q Consensus 742 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l 820 (938)
+.|++++|++++.+|..+.++++|+.|++++|.++ +.+|..++.+++|++||+++|++++..|..+
T Consensus 424 -------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 424 -------------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp -------------CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred -------------CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 78999999999999999999999999999999998 6899999999999999999999999999999
Q ss_pred cCCCCCCeEeCcCCcccccCCCC-CcCCCcCCCCcCCCC
Q 036642 821 SSLTYLNHLNLSNNNLTGKIPSS-TQLQSFDASSYAGND 858 (938)
Q Consensus 821 ~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~ 858 (938)
.++++|++|++++|++++..|.. ..+..+....+.+|.
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999999999999876643 445555555566663
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.5e-45 Score=440.24 Aligned_cols=533 Identities=22% Similarity=0.212 Sum_probs=329.6
Q ss_pred cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccC
Q 036642 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP 187 (938)
Q Consensus 108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~ 187 (938)
++|+.+. +.+++|||++|.|+++ .|..|.++++|++|+|++|+|++..|.+|++|++|++|+|++|++....+.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-- 119 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-- 119 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG--
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH--
Confidence 4565553 3678888888888753 3456777788888888888777666677777777777777777666554444
Q ss_pred CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCC
Q 036642 188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL 267 (938)
Q Consensus 188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 267 (938)
|.++++|++|++++|+++++++..|+++++|++|++++|.+++...|..++.+++|
T Consensus 120 ------------------------f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 120 ------------------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp ------------------------GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ------------------------hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 44555555555555666666666677777777777777777665446677777777
Q ss_pred CEEEccCCcccCCCCccccCCCC----CCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchh-hHhhhccCCCCee
Q 036642 268 VFLDLRRNNFQGPIPEGLQNLTS----LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV-IRSMASLCNLRSV 342 (938)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L 342 (938)
++|++++|++++..+..+..+.+ ...++++.|.+....+. ......++.+++.+|...... +..+..+..++..
T Consensus 176 ~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp CEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred hhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 78888777777766666655443 34677777777643333 333345566777766554322 2334444444433
Q ss_pred ecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEcc
Q 036642 343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422 (938)
Q Consensus 343 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 422 (938)
.+..+..... ..+. ......+..+..+...++.
T Consensus 255 ~l~~~~~~~~-----------------------~~l~------------------------~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 255 RLVLGEFRNE-----------------------GNLE------------------------KFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp EEEEECCTTS-----------------------CCCS------------------------CCCTTTTGGGGGSEEEEEE
T ss_pred cccccccccc-----------------------cccc------------------------cccccccccccchhhhhhh
Confidence 3322111100 0000 0011112222222222222
Q ss_pred CccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccC
Q 036642 423 YNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI 502 (938)
Q Consensus 423 ~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 502 (938)
.+...... ...+..+....+++.+++.++.+....
T Consensus 288 ~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~------------------------- 322 (635)
T 4g8a_A 288 LAYLDYYL--------------------DGIIDLFNCLTNVSSFSLVSVTIERVK------------------------- 322 (635)
T ss_dssp EECCCSCE--------------------EECTTTTGGGTTCSEEEEESCEEEECG-------------------------
T ss_pred hhhhcccc--------------------cchhhhhhhhccccccccccccccccc-------------------------
Confidence 22111100 001111222333444444444433211
Q ss_pred CCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCC
Q 036642 503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ 582 (938)
Q Consensus 503 ~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 582 (938)
.+.....++.|++.+|.+.+..+..+.. |+.+++++|...... ....++
T Consensus 323 -~~~~~~~L~~L~l~~~~~~~~~~~~l~~----------------------------L~~l~l~~n~~~~~~--~~~~l~ 371 (635)
T 4g8a_A 323 -DFSYNFGWQHLELVNCKFGQFPTLKLKS----------------------------LKRLTFTSNKGGNAF--SEVDLP 371 (635)
T ss_dssp -GGGSCCCCSEEEEESCEESSCCCCBCTT----------------------------CCEEEEESCCSCCBC--CCCBCT
T ss_pred -ccccchhhhhhhcccccccCcCcccchh----------------------------hhhcccccccCCCCc--cccccc
Confidence 1122223334444444333322222233 334444444333211 123445
Q ss_pred CCCEEEcCCCccc--ccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEe
Q 036642 583 NLMILDLSNNKFT--GNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLI 660 (938)
Q Consensus 583 ~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~ 660 (938)
+|+.|++++|.+. +..+..+..+.+|+.+++..|......+.+..+++|+.++++.|+.....+...+..+++++.++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 5555555555553 23344445556666666666666554445666666777777766666655555555678888888
Q ss_pred eCCCcccccCCccccCCCccCeeeccccccc-cccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeee
Q 036642 661 LRSNKFHSLLPKGLCDLAFLQIVDLADNNLS-GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV 739 (938)
Q Consensus 661 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (938)
++.|++.+..+..+..+++|+.|++++|.+. +.+|..+..+++|
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L----------------------------------- 496 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL----------------------------------- 496 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----------------------------------
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-----------------------------------
Confidence 8888888888888888899999999998754 3466666666655
Q ss_pred ecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCcc
Q 036642 740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQS 819 (938)
Q Consensus 740 ~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~ 819 (938)
+.|||++|++++.+|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++..|..
T Consensus 497 ---------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 497 ---------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp ---------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred ---------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 78999999999989999999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CCCCeEeCcCCcccccCCCC
Q 036642 820 MSSL-TYLNHLNLSNNNLTGKIPSS 843 (938)
Q Consensus 820 l~~l-~~L~~L~ls~N~l~g~ip~~ 843 (938)
+..+ ++|++|++++|+++|.|...
T Consensus 562 l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred HHhhhCcCCEEEeeCCCCcccCCcH
Confidence 9998 68999999999999988743
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-45 Score=434.67 Aligned_cols=484 Identities=19% Similarity=0.198 Sum_probs=294.7
Q ss_pred CCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEE
Q 036642 240 STLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLG 319 (938)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 319 (938)
++|++|++++|.+++.. +..+.++++|++|++++|.+++..|+.+..+++|++|++++|.+++..|..++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 34555555555554332 44455555555555555555554455555555555555555555555555555555555555
Q ss_pred ccCCcCCch-hhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEcc
Q 036642 320 VSNNSLQGR-VIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLS 398 (938)
Q Consensus 320 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 398 (938)
+++|.+++. .+..++++++|+.|++++|.+.+.++.. .+..++ +|++|++++|.+++..|..++.+++|++|+++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCC-EEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhccc-ccCeeeccCCcccccChhhhhccccCceEecc
Confidence 555555542 3344555555555555555533333210 233333 66677777777777777778888888888888
Q ss_pred CCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccc
Q 036642 399 NNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIP 478 (938)
Q Consensus 399 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 478 (938)
+|.+.......+..+++|++|++++|++++.+.. .......+++|+.|++++|.+++..+
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFS--------------------PLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC--------------------CCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cCcccccchhhHhhcccccEEEccCCcccccccc--------------------ccchhhhhhcccceeccccccchhHH
Confidence 8887643333345688888888888888764210 01112346778888888888876655
Q ss_pred hhHh---hcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhc
Q 036642 479 NIFW---SSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAH 555 (938)
Q Consensus 479 ~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~ 555 (938)
..+. ..+++|+.+++++|.+.+... +... ....+..+++++.|++.++.+.....
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~-------------~~~~~~~l~~L~~L~l~~~~i~~~~~-------- 298 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGD-FNPS-------------ESDVVSELGKVETVTIRRLHIPQFYL-------- 298 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSC-CCCC-------------TTTCCCCCTTCCEEEEESCBCSCGGG--------
T ss_pred HHHHHHhhhhcccccccccccccccccc-cccc-------------chhhhhhhcccccccccccccchhhh--------
Confidence 4432 335566777777776654311 0000 00011113344444444443322100
Q ss_pred cCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCccc-CCCCCCcEEEccccccccccc----ccccCcC
Q 036642 556 ELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNLSGTIH----SLKNCTA 630 (938)
Q Consensus 556 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~----~l~~l~~ 630 (938)
...++..+...++|+.|++++|++. .+|..+ ..+++|++|++++|++++.++ .+..+++
T Consensus 299 ---------------~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 299 ---------------FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp ---------------SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ---------------cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 0011222233445555555555554 444443 345566666666666655432 2455666
Q ss_pred CcEEECCCCccCCCCC-hhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccc
Q 036642 631 LLTLDVGENEFVENIP-TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNS 709 (938)
Q Consensus 631 L~~L~Ls~N~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~ 709 (938)
|++|++++|++++..+ ......+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+.
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~---------- 430 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP---------- 430 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC----------
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc----------
Confidence 6666666666654211 122235777777777777777 36777777888888888888876 3333221
Q ss_pred cccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCc
Q 036642 710 HAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT 789 (938)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 789 (938)
+.|+.||+++|++++.+ +.+++|+.|+|++|+++
T Consensus 431 ------------------------------------------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 431 ------------------------------------------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK 464 (549)
T ss_dssp ------------------------------------------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ------------------------------------------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC
Confidence 12478999999999743 57899999999999999
Q ss_pred ccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcC
Q 036642 790 GRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQL 846 (938)
Q Consensus 790 ~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 846 (938)
.+|+ .+.+++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|....+
T Consensus 465 -~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l 519 (549)
T 2z81_A 465 -TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519 (549)
T ss_dssp -SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred -cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHH
Confidence 7887 578999999999999999999999999999999999999999999854333
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.1e-45 Score=430.28 Aligned_cols=482 Identities=18% Similarity=0.148 Sum_probs=302.0
Q ss_pred EEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCC
Q 036642 121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV 200 (938)
Q Consensus 121 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 200 (938)
+.|.+++.++ .+|..+. ++|++|++++|++++..|..|+++++|++|++++|++....+..|.++++|++|++++|
T Consensus 9 ~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 9 VCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp EEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred eEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3466666666 3555443 56777777777777666667777777777777777777666666777777777777777
Q ss_pred CCCCCcchhhhhCCCCCCcEEEcCCCCCCCC-CcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccC
Q 036642 201 NLSKASDWLRVTNTLPSLVKLRLSRCQLHHL-PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG 279 (938)
Q Consensus 201 ~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 279 (938)
.+++.+. ..+.++++|++|++++|.++++ .+..++++++|++|++++|.+.+.+.+..+.++++|++|++++|.+++
T Consensus 85 ~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 85 HLSSLSS--SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CCCSCCH--HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ccCccCH--HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 7666532 4567777777777777777764 345677788888888888875554434577778888888888888887
Q ss_pred CCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchh---hHhhhccCCCCeeecCCCcCccchhhH
Q 036642 280 PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV---IRSMASLCNLRSVMLSCVKLSQEISEI 356 (938)
Q Consensus 280 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~ 356 (938)
..|..+..+++|++|++++|.+....+..+..+++|++|++++|++++.. ......+++|+.|++++|.+.+..+..
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 77888888888888888888775433333356788888888888777642 122344667777777777777665554
Q ss_pred HHhhhcccccCccEEEccCCcCcccc------ccccCCCCCccEEEccCCeeccc-----ccccccCCCCCcEEEccCcc
Q 036642 357 FDIFSGCVSSGLEILVLRGSSVSGHL------TYKLGQFKNLYYLDLSNNSIVGP-----IPFSLGHLSTLQFIDLSYNE 425 (938)
Q Consensus 357 ~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~ 425 (938)
+........ +++.+++++|.+.+.. ...+..+++|+.|++.++.+... ++..+...++|++|++++|.
T Consensus 243 l~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 243 LLKLLRYIL-ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHGGGGGCT-TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHhhhhc-cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 333333333 6666666666554421 11234455566666655544321 11112223455555555555
Q ss_pred CCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchh--HhhcCcCccEEecccccccccCC
Q 036642 426 LNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNI--FWSSASQIYVLDLSFNQIHGQIP 503 (938)
Q Consensus 426 l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~ 503 (938)
+..+|..+ +..+++|++|++++|++++.+|.. .+..+++|+.|++++|++++..+
T Consensus 322 l~~ip~~~-----------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 322 VFLVPCSF-----------------------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp CCCCCHHH-----------------------HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred cccCCHHH-----------------------HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 54433322 134555555555555555444321 12344555555555555544321
Q ss_pred ---CccccccCceeecCCccCccCCCCC---CCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchh
Q 036642 504 ---NLTNAAQLEVLSLGSNSFSGALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC 577 (938)
Q Consensus 504 ---~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~ 577 (938)
.+..+++|++|++++|++++ +|.. +++|++|++++|++++. +.. -.++|++|++++|++++.+
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l-~~~------~~~~L~~L~Ls~N~l~~~~--- 447 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVV-KTC------IPQTLEVLDVSNNNLDSFS--- 447 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCC-CTT------SCTTCSEEECCSSCCSCCC---
T ss_pred chhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcccc-cch------hcCCceEEECCCCChhhhc---
Confidence 24445555555555555553 2321 34566666666665431 111 1256778888888777643
Q ss_pred hhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCC
Q 036642 578 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIP 646 (938)
Q Consensus 578 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p 646 (938)
..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.++ .+..+++|+.|++++|++.+..|
T Consensus 448 -~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 -LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 46778888888888887 5665 4568888888888888888777 68888888888888888888776
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.2e-46 Score=442.63 Aligned_cols=451 Identities=17% Similarity=0.242 Sum_probs=316.8
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCC------C------ccchhhhcCCCCCEEEccCCcCCchhhHh
Q 036642 265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN------S------SIPNWLYRFNRLESLGVSNNSLQGRVIRS 332 (938)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------~------~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 332 (938)
.+++.|+|++|.+.|.+|+.++++++|++|++++|.+. + .+|... +..|+ +++++|.+.+.++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 46777777777777777777777777777777777651 1 222222 22333 444444444443333
Q ss_pred hhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEc--cCCeecccccccc
Q 036642 333 MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDL--SNNSIVGPIPFSL 410 (938)
Q Consensus 333 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L--s~n~l~~~~~~~l 410 (938)
+..+. ..+..+++....+.. .....++.+.+ ..|++++ +|..+
T Consensus 158 ~~~~~----------------------------~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l 202 (636)
T 4eco_A 158 FSDLI----------------------------KDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAV 202 (636)
T ss_dssp SCHHH----------------------------HHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGG
T ss_pred HHHHH----------------------------HHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHH
Confidence 22110 011111111111110 01112222222 2466666 66667
Q ss_pred cCCCCCcEEEccCccCCC------------------CCCCCC--CccccceeecccccCCCCCCcccCCCCCCcEEEccC
Q 036642 411 GHLSTLQFIDLSYNELNG------------------MNDNWI--PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSY 470 (938)
Q Consensus 411 ~~l~~L~~L~Ls~n~l~~------------------~~~~~~--~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~ 470 (938)
+++++|++|+|++|.+++ +|..+. ...+|++|++++|.+.+.+|..+.++++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 777777777777777766 555555 556666666666666667888888888888888888
Q ss_pred cc-ccc-ccchhHhh-----cCcCccEEecccccccccCC--CccccccCceeecCCccCccCCCCCCCCCcEEEccCCc
Q 036642 471 SG-ITG-SIPNIFWS-----SASQIYVLDLSFNQIHGQIP--NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNS 541 (938)
Q Consensus 471 n~-l~~-~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~--~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~ 541 (938)
|+ +++ .+|..+.. .+++|+.|++++|+++..+. .+..+++|++|++++|.+.|.+|
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--------------- 347 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--------------- 347 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC---------------
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh---------------
Confidence 87 887 77776643 13677777777777773332 35566666666666655554444
Q ss_pred cccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCC-CCEEEcCCCcccccCCcccCCCC--CCcEEEcccccc
Q 036642 542 ISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQN-LMILDLSNNKFTGNLPISLGSLI--SLQSLHLRKNNL 618 (938)
Q Consensus 542 l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l 618 (938)
.++.+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|+.|++++|++
T Consensus 348 -----------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 348 -----------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp -----------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred -----------hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 2345677888888888888 77777888888 888888888888 7787777654 888888888888
Q ss_pred ccccc-ccc-------cCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccc-cC-------CCccCe
Q 036642 619 SGTIH-SLK-------NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGL-CD-------LAFLQI 682 (938)
Q Consensus 619 ~~~~~-~l~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~-------l~~L~~ 682 (938)
++.+| .+. .+++|++|++++|++. .+|..++..+++|++|++++|+++. +|... .. +++|+.
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCE
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccE
Confidence 88777 676 7788999999999988 5787777678999999999999984 55433 32 238999
Q ss_pred eeccccccccccchhhh--cchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEee
Q 036642 683 VDLADNNLSGEVPRCIH--NLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFS 760 (938)
Q Consensus 683 L~Ls~N~l~~~~p~~l~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 760 (938)
|++++|+++ .+|..+. .+++| +.|+|+
T Consensus 493 L~Ls~N~l~-~lp~~~~~~~l~~L--------------------------------------------------~~L~Ls 521 (636)
T 4eco_A 493 IDLRFNKLT-KLSDDFRATTLPYL--------------------------------------------------VGIDLS 521 (636)
T ss_dssp EECCSSCCC-BCCGGGSTTTCTTC--------------------------------------------------CEEECC
T ss_pred EECcCCcCC-ccChhhhhccCCCc--------------------------------------------------CEEECC
Confidence 999999998 7887665 55554 789999
Q ss_pred cCccCccCchhccCccCCCEEeC------cCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642 761 KNNFSGKIPLEVTNLKALQSFNL------SNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN 834 (938)
Q Consensus 761 ~N~l~g~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 834 (938)
+|++++ +|..++++++|+.|+| ++|++.+.+|+.++++++|++|||++|++ +.+|..+. ++|++|++++|
T Consensus 522 ~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp SSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSC
T ss_pred CCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCC
Confidence 999997 9999999999999999 56889999999999999999999999999 68898876 79999999999
Q ss_pred cccc
Q 036642 835 NLTG 838 (938)
Q Consensus 835 ~l~g 838 (938)
++..
T Consensus 598 ~l~~ 601 (636)
T 4eco_A 598 PNIS 601 (636)
T ss_dssp TTCE
T ss_pred CCcc
Confidence 8875
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=429.36 Aligned_cols=460 Identities=18% Similarity=0.217 Sum_probs=308.9
Q ss_pred EEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCc
Q 036642 269 FLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVK 348 (938)
Q Consensus 269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 348 (938)
+|++++|.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|+++++|++|++++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 4444444444 3444333 455555555555555444555555555555555555555555555555555555555555
Q ss_pred CccchhhHHHhhhcccccCccEEEccCCcCcc-ccccccCCCCCccEEEccCCeecccccccccCCCCC--cEEEccCcc
Q 036642 349 LSQEISEIFDIFSGCVSSGLEILVLRGSSVSG-HLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTL--QFIDLSYNE 425 (938)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~Ls~n~ 425 (938)
+++ +|. . .++ +|++|++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.
T Consensus 81 l~~-lp~----~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 81 LVK-ISC----H--PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCE-EEC----C--CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred eee-cCc----c--ccC-CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 542 222 1 122 55555555555554 345566667777777777776664 245555555 666666666
Q ss_pred CCCCCCCCCCccccceeecccccCCCCCCcccCCCC-CCcEEEccCcccccccchhHhhcCcCccEEeccccc-------
Q 036642 426 LNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQK-HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ------- 497 (938)
Q Consensus 426 l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~------- 497 (938)
+.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.
T Consensus 150 l~~---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 150 TYG---------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp TTT---------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred ccc---------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 511 223444444433 233456666666666666555666677777777765
Q ss_pred ccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchh
Q 036642 498 IHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC 577 (938)
Q Consensus 498 l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~ 577 (938)
+.+.++.+..+++|+.|++++|.+ ++..+....... ..++|++|++++|+++|.+|..
T Consensus 209 ~~~~~~~l~~l~~L~~L~l~~~~l---------------------~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 209 FLSILAKLQTNPKLSNLTLNNIET---------------------TWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp HHHHHHGGGGCTTCCEEEEEEEEE---------------------EHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCC
T ss_pred eecchhhhccccchhhcccccccc---------------------CHHHHHHHHHHh-hhCcccEEEeecccccCccccc
Confidence 444444555555555555544443 332222222211 2457888888888888888877
Q ss_pred h-----hcCCCCCEEEcCCCcccccCC-cccCCC---CCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChh
Q 036642 578 W-----MNYQNLMILDLSNNKFTGNLP-ISLGSL---ISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTW 648 (938)
Q Consensus 578 ~-----~~l~~L~~L~Ls~n~l~~~~p-~~~~~l---~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 648 (938)
+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. ....+++|++|++++|++.+.+|.+
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhh
Confidence 7 7788888888888888 455 444444 67888888888875432 2367888888888888888888877
Q ss_pred HhhhcCcccEEeeCCCcccc--cCCccccCCCccCeeeccccccccccchh-hhcchhhhhccccccchhhhhhhhccCC
Q 036642 649 IGERFSRMVVLILRSNKFHS--LLPKGLCDLAFLQIVDLADNNLSGEVPRC-IHNLRAMVTLNSHAGKAIQYQFLLYASR 725 (938)
Q Consensus 649 ~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~~~~~~~~~~~~~~~~~~ 725 (938)
+. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|.. +..+++
T Consensus 344 ~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~---------------------- 400 (520)
T 2z7x_B 344 CG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS---------------------- 400 (520)
T ss_dssp CC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT----------------------
T ss_pred hc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc----------------------
Confidence 76 78889999999998887 56678889999999999999998767754 444443
Q ss_pred CcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEE
Q 036642 726 APSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESI 805 (938)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L 805 (938)
|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|
T Consensus 401 ----------------------------L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 401 ----------------------------LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp ----------------------------CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred ----------------------------CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 37899999999998888776 78999999999999 899988899999999
Q ss_pred ECCCCcccccCCcc-ccCCCCCCeEeCcCCcccccCCCC
Q 036642 806 DFSLNQLSGEIPQS-MSSLTYLNHLNLSNNNLTGKIPSS 843 (938)
Q Consensus 806 dLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~~ 843 (938)
|+++|+++ .+|.. +..+++|++|++++|+++|.++..
T Consensus 450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 99999999 56765 899999999999999999988753
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.3e-43 Score=420.54 Aligned_cols=517 Identities=19% Similarity=0.185 Sum_probs=331.1
Q ss_pred cEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCC
Q 036642 79 HIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMI 158 (938)
Q Consensus 79 ~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 158 (938)
.++.|+|++ +.+.+-.+.+|.++++|++|||++|+|+++ .|..|.++++|++|+|++|++++..
T Consensus 53 ~~~~LdLs~---------------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 53 STKNLDLSF---------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TCCEEECTT---------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCEEEeeC---------------CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCC
Confidence 578899987 355554456899999999999999999964 4567999999999999999999887
Q ss_pred CcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccC
Q 036642 159 PPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIAN 238 (938)
Q Consensus 159 p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~ 238 (938)
+..|+++++|++|++++|++.......|+++++|++|++++|.++... .+..+..+++|++|++++|+++++.+..+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccccccccc
Confidence 888999999999999999999888888888888888888888887642 2345556677777777777777666655544
Q ss_pred CCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCC-ccchhhhcCCCCCE
Q 036642 239 FSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNS-SIPNWLYRFNRLES 317 (938)
Q Consensus 239 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~ 317 (938)
+.+++. ....++++.|.+....+. ......++.+++.+|.... ..+..+..+..++.
T Consensus 196 L~~l~~---------------------~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~ 253 (635)
T 4g8a_A 196 LHQMPL---------------------LNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 253 (635)
T ss_dssp HHTCTT---------------------CCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEE
T ss_pred hhhhhh---------------------hhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCccccc
Confidence 433220 112344444444422222 2222334455555544332 22334455555555
Q ss_pred EEccCCcCC------chhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCC
Q 036642 318 LGVSNNSLQ------GRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKN 391 (938)
Q Consensus 318 L~L~~n~l~------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 391 (938)
..+..+... ......+..+..+....+..+... .........+..+.+
T Consensus 254 ~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~--------------------------~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 254 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD--------------------------YYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC--------------------------SCEEECTTTTGGGTT
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhhc--------------------------ccccchhhhhhhhcc
Confidence 554332221 111112222222222222111110 001111223444556
Q ss_pred ccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCc
Q 036642 392 LYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471 (938)
Q Consensus 392 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n 471 (938)
++.+++.++.+.... .+.....++.|++.+|.+..++. ..
T Consensus 308 l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--------------------------~~------------ 347 (635)
T 4g8a_A 308 VSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT--------------------------LK------------ 347 (635)
T ss_dssp CSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC--------------------------CB------------
T ss_pred ccccccccccccccc--ccccchhhhhhhcccccccCcCc--------------------------cc------------
Confidence 666666666655332 24444556666666555543211 01
Q ss_pred ccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhh
Q 036642 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFIC 551 (938)
Q Consensus 472 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~ 551 (938)
+..|+.++++.|.+.... ....
T Consensus 348 -------------l~~L~~l~l~~n~~~~~~-~~~~-------------------------------------------- 369 (635)
T 4g8a_A 348 -------------LKSLKRLTFTSNKGGNAF-SEVD-------------------------------------------- 369 (635)
T ss_dssp -------------CTTCCEEEEESCCSCCBC-CCCB--------------------------------------------
T ss_pred -------------chhhhhcccccccCCCCc-cccc--------------------------------------------
Confidence 223344444443332111 1111
Q ss_pred hhhccCCCcceeeccCccCC--CccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc--cccc
Q 036642 552 YRAHELKKLQFLYLRGNFLQ--GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKN 627 (938)
Q Consensus 552 ~~l~~l~~L~~L~ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~ 627 (938)
+++|+.+++++|.+. +..+..+..+.+|+.++++.|...+ .+..+..+++|+.+++.+|+.....+ .+..
T Consensus 370 -----l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 370 -----LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp -----CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred -----ccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence 233333333333332 1233444555666666666666553 34455566677777776666655444 5667
Q ss_pred CcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcc-cccCCccccCCCccCeeeccccccccccchhhhcchhhhh
Q 036642 628 CTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKF-HSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 706 (938)
Q Consensus 628 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 706 (938)
+++++.++++.|.+.+..|..+. .++.|+.|++++|++ .+..|..+..+++|+.|+|++|++++.+|..|.++++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L-- 520 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-- 520 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC--
T ss_pred ccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC--
Confidence 77777777777777665555444 678888888888864 44577888999999999999999998888888887776
Q ss_pred ccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCc
Q 036642 707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNN 786 (938)
Q Consensus 707 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 786 (938)
+.|+|++|++++..|..++++++|+.|+|++|
T Consensus 521 ------------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 521 ------------------------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp ------------------------------------------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred ------------------------------------------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 78899999999888889999999999999999
Q ss_pred cCcccCCcccccc-CCCCEEECCCCccccc
Q 036642 787 FFTGRIPESIGAM-RSLESIDFSLNQLSGE 815 (938)
Q Consensus 787 ~l~~~ip~~~~~l-~~L~~LdLs~N~l~~~ 815 (938)
+|++.+|+.|..+ ++|+.|||++|++++.
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999998 7899999999999875
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-43 Score=413.65 Aligned_cols=457 Identities=21% Similarity=0.209 Sum_probs=315.3
Q ss_pred CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCC
Q 036642 120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY 199 (938)
Q Consensus 120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 199 (938)
++||+++|+++ .+|..+. ++|++|++++|.+++..|..|+++++|++|++++|++....+..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57888888888 4676654 7888888888888877777888888888888888888877777888888888888888
Q ss_pred CCCCCCcchhhhhCCCCCCcEEEcCCCCCCCC-CcccccCCCCCCEEECCCCCCCCccCcccccCCCCC--CEEEccCCc
Q 036642 200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL-PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL--VFLDLRRNN 276 (938)
Q Consensus 200 n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~ 276 (938)
|+++.++.. .+++|++|++++|+++++ .|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.
T Consensus 79 N~l~~lp~~-----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 79 NKLVKISCH-----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp SCCCEEECC-----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECT
T ss_pred CceeecCcc-----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccc
Confidence 888765442 688999999999999885 46788999999999999998875 346667777 999999999
Q ss_pred c--cCCCCccccCCC-CCCEEECcCCcCCCccch-hhhcCCCCCEEEccCCc-------CCchhhHhhhccCCCCeeecC
Q 036642 277 F--QGPIPEGLQNLT-SLKHLLLDSNRFNSSIPN-WLYRFNRLESLGVSNNS-------LQGRVIRSMASLCNLRSVMLS 345 (938)
Q Consensus 277 l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~ 345 (938)
+ .+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .++.+++|+.|+++
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLN 228 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccc
Confidence 8 777787777665 344677888887765554 56678899999999987 555555 78888888888888
Q ss_pred CCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccc-----cCCCCCcEEE
Q 036642 346 CVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL-----GHLSTLQFID 420 (938)
Q Consensus 346 ~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~ 420 (938)
+|.+.+..+....... ..++|++|++++|++++.+|..+ ..+++|+.++
T Consensus 229 ~~~l~~~~~~~~~~~~--------------------------~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~ 282 (520)
T 2z7x_B 229 NIETTWNSFIRILQLV--------------------------WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282 (520)
T ss_dssp EEEEEHHHHHHHHHHH--------------------------HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred ccccCHHHHHHHHHHh--------------------------hhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence 8887765433211010 12345555555555555555554 5555555555
Q ss_pred ccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCC---CCCcEEEccCcccccccchhHhhcCcCccEEeccccc
Q 036642 421 LSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQ---KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ 497 (938)
Q Consensus 421 Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 497 (938)
+++|.+ .++. .++..+ .+|+.|++++|.+.... +...+++|++|++++|+
T Consensus 283 l~~n~~-~~p~-----------------------~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 283 VVSDVF-GFPQ-----------------------SYIYEIFSNMNIKNFTVSGTRMVHML---CPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EEECCC-CSCT-----------------------HHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSC
T ss_pred ccccce-ecch-----------------------hhhhcccccCceeEEEcCCCcccccc---chhhCCcccEEEeECCc
Confidence 555555 2211 111111 33444555444443111 00122333333333333
Q ss_pred ccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC--ccc
Q 036642 498 IHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELT 575 (938)
Q Consensus 498 l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~ 575 (938)
+++..| ..++.+++|++|++++|++++ .+|
T Consensus 336 l~~~~~------------------------------------------------~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 336 LTDTVF------------------------------------------------ENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp CCTTTT------------------------------------------------TTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred cChhhh------------------------------------------------hhhccCCCCCEEEccCCccCccccch
Confidence 332211 122335566666666666665 455
Q ss_pred hhhhcCCCCCEEEcCCCcccccCCcc-cCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhc
Q 036642 576 DCWMNYQNLMILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERF 653 (938)
Q Consensus 576 ~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l 653 (938)
..+..+++|++|++++|++++.+|.. +..+++|++|++++|++++.++ .+. ++|++|++++|++. .+|.+++ .+
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l 443 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KL 443 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GC
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cC
Confidence 66777777888888888777645543 6677888888888888877666 443 68888899988887 6888887 79
Q ss_pred CcccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642 654 SRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP 695 (938)
Q Consensus 654 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 695 (938)
++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 444 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999999986433448889999999999999987654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-42 Score=420.05 Aligned_cols=448 Identities=18% Similarity=0.229 Sum_probs=308.4
Q ss_pred CCCCEEECcCCcCCCccchhhhcCCCCCEEEc-cCCcCCchhhHhhhcc-CCCCeee---------------cCCCcCcc
Q 036642 289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGV-SNNSLQGRVIRSMASL-CNLRSVM---------------LSCVKLSQ 351 (938)
Q Consensus 289 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l-~~L~~L~---------------L~~n~l~~ 351 (938)
.+++.|+|++|.+.|.+|+.++++++|++|+| ++|.+.|..+...... ..+.... .....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46788888888888888888888888888888 7776665532110000 0000000 00001111
Q ss_pred chhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccC--CeecccccccccCCCCCcEEEccCccCCC-
Q 036642 352 EISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSN--NSIVGPIPFSLGHLSTLQFIDLSYNELNG- 428 (938)
Q Consensus 352 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~- 428 (938)
..+.. +...+ ...+........++.+.+.. |++++ +|..+.++++|++|+|++|.+++
T Consensus 403 l~~~~----l~~~~--------------~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~ 463 (876)
T 4ecn_A 403 LLQDA----INRNP--------------EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYD 463 (876)
T ss_dssp HHHHH----HHTCT--------------TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGG
T ss_pred HHHHH----hhhCc--------------cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCC
Confidence 11110 00000 00011112223344444443 78887 78888888888888888888887
Q ss_pred -----------------CCCCCC--CccccceeecccccCCCCCCcccCCCCCCcEEEccCcc-ccc-ccchhHhhcCcC
Q 036642 429 -----------------MNDNWI--PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSG-ITG-SIPNIFWSSASQ 487 (938)
Q Consensus 429 -----------------~~~~~~--~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~l~~ 487 (938)
+|..+. .+.+|+.|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+.. ++
T Consensus 464 ~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~- 541 (876)
T 4ecn_A 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LA- 541 (876)
T ss_dssp GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HH-
T ss_pred cccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hh-
Confidence 455444 45555555555555555666666666666666666665 655 55554421 11
Q ss_pred ccEEecccccccccCCCccccccCceeecCCccCccCCCC-----CCCCCcEEEccCCccccccchhhhhhhccCCCcce
Q 036642 488 IYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPL-----ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQF 562 (938)
Q Consensus 488 L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~-----~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~ 562 (938)
..+..+++|++|++++|.+. .+|. .+++|+.|++++|.++ .+| .++.+++|+.
T Consensus 542 ---------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-----~~~~L~~L~~ 599 (876)
T 4ecn_A 542 ---------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-----AFGTNVKLTD 599 (876)
T ss_dssp ---------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-----CCCTTSEESE
T ss_pred ---------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-----hhcCCCcceE
Confidence 00111224444444444444 3333 1345555555555555 333 3466889999
Q ss_pred eeccCccCCCccchhhhcCCC-CCEEEcCCCcccccCCcccCCCCC--CcEEEcccccccccccccc------cCcCCcE
Q 036642 563 LYLRGNFLQGELTDCWMNYQN-LMILDLSNNKFTGNLPISLGSLIS--LQSLHLRKNNLSGTIHSLK------NCTALLT 633 (938)
Q Consensus 563 L~ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~~~l~------~l~~L~~ 633 (938)
|++++|+++ .+|..+.++++ |+.|++++|+++ .+|..+..++. |+.|+|++|++++.+|.+. .+++|+.
T Consensus 600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 999999998 78888999998 999999999998 78888877654 9999999999988776433 4568999
Q ss_pred EECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccC--------CCccCeeeccccccccccchhhh--cchh
Q 036642 634 LDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD--------LAFLQIVDLADNNLSGEVPRCIH--NLRA 703 (938)
Q Consensus 634 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--------l~~L~~L~Ls~N~l~~~~p~~l~--~l~~ 703 (938)
|++++|++. .+|.+++..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++
T Consensus 678 L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 678 VTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY 754 (876)
T ss_dssp EECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT
T ss_pred EEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCC
Confidence 999999998 688888778899999999999998 45555433 338999999999998 7887765 5555
Q ss_pred hhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeC
Q 036642 704 MVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNL 783 (938)
Q Consensus 704 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L 783 (938)
| +.|+|++|++++ +|..++.+++|+.|+|
T Consensus 755 L--------------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 755 L--------------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGI 783 (876)
T ss_dssp C--------------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred c--------------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence 4 789999999997 8999999999999999
Q ss_pred cC------ccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642 784 SN------NFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG 838 (938)
Q Consensus 784 s~------N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 838 (938)
++ |++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.||+++|++..
T Consensus 784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 76 889999999999999999999999999 78999876 689999999999874
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.9e-42 Score=406.88 Aligned_cols=463 Identities=17% Similarity=0.194 Sum_probs=286.2
Q ss_pred CEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCC
Q 036642 268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV 347 (938)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 347 (938)
+++++++|.+++ +|..+. ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 444444444442 333332 44555555555555444445555555555555555555544555555555555555555
Q ss_pred cCccchhhHHHhhhcccccCccEEEccCCcCccc-cccccCCCCCccEEEccCCeecccccccccCCCCC--cEEEccCc
Q 036642 348 KLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTL--QFIDLSYN 424 (938)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~Ls~n 424 (938)
+++. +|. . .++ +|++|++++|.+++. .|..++++++|++|++++|++++. .+..+++| ++|++++|
T Consensus 111 ~l~~-lp~----~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 111 RLQN-ISC----C--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CCCE-ECS----C--CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred cCCc-cCc----c--ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 4442 221 0 111 444444444444432 234555566666666666665542 23333333 55555555
Q ss_pred cCCCCCCCCCCccccceeecccccCCCCCCcccCCCC-CCcEEEccCcccccccchhHhhcCcCccEEeccccc-----c
Q 036642 425 ELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQK-HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ-----I 498 (938)
Q Consensus 425 ~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-----l 498 (938)
.+.. .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|+ +
T Consensus 180 ~l~~---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l 238 (562)
T 3a79_B 180 SYHI---------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238 (562)
T ss_dssp SCCC---------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH
T ss_pred cccc---------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchH
Confidence 5510 234444444433 112446666666665555555556666666666663 2
Q ss_pred cccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhh
Q 036642 499 HGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCW 578 (938)
Q Consensus 499 ~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~ 578 (938)
.+.++.+...++|+.+++ +++.+++.........+ ..++|++|++++|.++|.+|..+
T Consensus 239 ~~~~~~l~~l~~L~~L~L---------------------~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~ 296 (562)
T 3a79_B 239 MTFLSELTRGPTLLNVTL---------------------QHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREE 296 (562)
T ss_dssp HHHHHHHHSCSSCEEEEE---------------------EEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCC
T ss_pred HHHHHHHhccCcceEEEe---------------------cCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchh
Confidence 222223333344444444 33333332221121211 23478888888888887777766
Q ss_pred -----hcCCCCCEEEcCCCcccccCC-cccCC---CCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhH
Q 036642 579 -----MNYQNLMILDLSNNKFTGNLP-ISLGS---LISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWI 649 (938)
Q Consensus 579 -----~~l~~L~~L~Ls~n~l~~~~p-~~~~~---l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 649 (938)
..++.|+.++++.+.+ .+| ..+.. ..+|+.|++++|.+.... ....+++|++|++++|++.+.+|.++
T Consensus 297 ~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (562)
T 3a79_B 297 FTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGC 373 (562)
T ss_dssp CCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred hhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhh
Confidence 5666666666666665 344 22222 256888888888775322 23677888888888888888777777
Q ss_pred hhhcCcccEEeeCCCccccc--CCccccCCCccCeeeccccccccccchh-hhcchhhhhccccccchhhhhhhhccCCC
Q 036642 650 GERFSRMVVLILRSNKFHSL--LPKGLCDLAFLQIVDLADNNLSGEVPRC-IHNLRAMVTLNSHAGKAIQYQFLLYASRA 726 (938)
Q Consensus 650 ~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 726 (938)
. .+++|++|++++|++++. +|..+..+++|+.|++++|++++.+|.. +..+++
T Consensus 374 ~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~----------------------- 429 (562)
T 3a79_B 374 S-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES----------------------- 429 (562)
T ss_dssp C-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT-----------------------
T ss_pred c-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc-----------------------
Confidence 6 688888888888888873 4567888999999999999998766653 444443
Q ss_pred cchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEE
Q 036642 727 PSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESID 806 (938)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~Ld 806 (938)
|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++||
T Consensus 430 ---------------------------L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 430 ---------------------------ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479 (562)
T ss_dssp ---------------------------CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEE
T ss_pred ---------------------------CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEE
Confidence 37899999999988887765 78999999999999 7888888999999999
Q ss_pred CCCCcccccCCcc-ccCCCCCCeEeCcCCcccccCCCCCc
Q 036642 807 FSLNQLSGEIPQS-MSSLTYLNHLNLSNNNLTGKIPSSTQ 845 (938)
Q Consensus 807 Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~~~~ 845 (938)
|++|+++ .+|.. +..+++|++|++++|+++|.||..+.
T Consensus 480 L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 480 VASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp CCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred CCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 9999999 56666 99999999999999999999886543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-40 Score=389.68 Aligned_cols=460 Identities=22% Similarity=0.208 Sum_probs=313.8
Q ss_pred CCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeC
Q 036642 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL 197 (938)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 197 (938)
..+++|+++|+++. +|..+. ++|++|++++|.+++..|..|+++++|++|++++|++....+..|.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~--ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH--VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS--CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc--CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 44888999988884 676553 78899999999988887788999999999999999988888888888999999999
Q ss_pred CCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCC-cccccCCCCCCEEECCCCCCCCccCcccccCCCCC--CEEEccC
Q 036642 198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP-PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL--VFLDLRR 274 (938)
Q Consensus 198 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~ 274 (938)
++|+++.++.. .+++|++|++++|++++++ +..|+++++|++|++++|.+.+. .+..+++| ++|++++
T Consensus 108 s~N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 108 SHNRLQNISCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp TTSCCCEECSC-----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEE
T ss_pred CCCcCCccCcc-----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeec
Confidence 99988866542 7889999999999998875 57899999999999999998753 34444555 9999999
Q ss_pred Ccc--cCCCCccccCCC-CCCEEECcCCcCCCccch-hhhcCCCCCEEEccCCcCC----chhhHhhhccCCCCeeecCC
Q 036642 275 NNF--QGPIPEGLQNLT-SLKHLLLDSNRFNSSIPN-WLYRFNRLESLGVSNNSLQ----GRVIRSMASLCNLRSVMLSC 346 (938)
Q Consensus 275 n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~ 346 (938)
|.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|... ...+..+..+++|+.+++..
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 998 888888887765 122567788887775554 3457788999999988532 12234567778888887777
Q ss_pred CcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccc-----cCCCCCcEEEc
Q 036642 347 VKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL-----GHLSTLQFIDL 421 (938)
Q Consensus 347 n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L 421 (938)
+.+.+....... ..+ ..++|++|++++|.+++.+|..+ ..++.|+.+++
T Consensus 259 ~~l~~~~~~~~~-------------------------~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 259 IETTWKCSVKLF-------------------------QFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp EEECHHHHHHHH-------------------------HHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred CcCcHHHHHHHH-------------------------Hhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 766553222110 001 12356666666666665555554 44444444444
Q ss_pred cCccCCCCCCCCCCccccceeecccccCCCCCCcccC---CCCCCcEEEccCcccccccchhHhhcCcCccEEecccccc
Q 036642 422 SYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLH---SQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI 498 (938)
Q Consensus 422 s~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 498 (938)
+.+.+ .++. .++. ...+|++|++++|.+.... +...+++|++|++++|++
T Consensus 313 ~~~~~-~~p~-----------------------~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 313 KNQVF-LFSK-----------------------EALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EECCC-SSCH-----------------------HHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCC
T ss_pred cccee-ecCh-----------------------hhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCcc
Confidence 44443 1110 1111 1134555555555543111 001223333333333333
Q ss_pred cccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC--ccch
Q 036642 499 HGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELTD 576 (938)
Q Consensus 499 ~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~ 576 (938)
++..+ ..+..+++|++|++++|++++ .+|.
T Consensus 366 ~~~~~------------------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 366 TDSVF------------------------------------------------QGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp CTTTT------------------------------------------------TTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred ccchh------------------------------------------------hhhcccCCCCEEECCCCCcCCcccchh
Confidence 32221 122345666666666666665 3345
Q ss_pred hhhcCCCCCEEEcCCCcccccCCc-ccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcC
Q 036642 577 CWMNYQNLMILDLSNNKFTGNLPI-SLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFS 654 (938)
Q Consensus 577 ~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~ 654 (938)
.+.++++|++|++++|++++.+|. .+..+++|++|++++|++++.++ .+. ++|++|++++|+++ .+|.+++ .++
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~ 473 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQ 473 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSC
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc-CCC
Confidence 677778888888888888774554 46778888888888888877666 443 68888889888887 5888887 789
Q ss_pred cccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642 655 RMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP 695 (938)
Q Consensus 655 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 695 (938)
+|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 474 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 99999999999986443348899999999999999987665
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-39 Score=371.27 Aligned_cols=300 Identities=22% Similarity=0.240 Sum_probs=163.9
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeec
Q 036642 265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML 344 (938)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 344 (938)
++|++|++++|.+ +.+|++++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. .
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~------- 71 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------R------- 71 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------H-------
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------c-------
Confidence 4555555555555 45555555555555555555555555555555444444333332210 1
Q ss_pred CCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCc
Q 036642 345 SCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYN 424 (938)
Q Consensus 345 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 424 (938)
++++|++++|.+++.. . ..++|++|++++|.+++ +|.. .++|++|++++|
T Consensus 72 ----------------------~l~~L~l~~~~l~~lp-~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n 121 (454)
T 1jl5_A 72 ----------------------QAHELELNNLGLSSLP-E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNN 121 (454)
T ss_dssp ----------------------TCSEEECTTSCCSCCC-S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred ----------------------CCCEEEecCCccccCC-C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCC
Confidence 4555666666555422 1 12567777777777775 4432 366777777777
Q ss_pred cCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCC
Q 036642 425 ELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN 504 (938)
Q Consensus 425 ~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 504 (938)
++++++.. +.+|++|++++|.+.+ +| .+..+++|++|++++|++++ +|.. .++|++|++++|++++ +|.
T Consensus 122 ~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~~ 190 (454)
T 1jl5_A 122 NLKALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LPE 190 (454)
T ss_dssp CCSCCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CCC
T ss_pred ccCcccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Ccc
Confidence 77765432 2567777777777765 55 48888888888888888884 5543 3578888888888887 457
Q ss_pred ccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCC
Q 036642 505 LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584 (938)
Q Consensus 505 l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 584 (938)
+..+++|++|++++|.+++ +|...++|++|++++|.++ .+| .++.+++|++|++++|++++ +|.. .++|
T Consensus 191 ~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp-----~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L 259 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELP-----ELQNLPFLTTIYADNNLLKT-LPDL---PPSL 259 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCC-----CCTTCTTCCEEECCSSCCSS-CCSC---CTTC
T ss_pred ccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-ccc-----ccCCCCCCCEEECCCCcCCc-cccc---cccc
Confidence 7788888888888888776 4444456666666666665 233 13455666666666666654 3321 2556
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccC
Q 036642 585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFV 642 (938)
Q Consensus 585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~ 642 (938)
+.|++++|++++ +|.. +++|+.|++++|++++... + .++|+.|++++|++.
T Consensus 260 ~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~-~--~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 260 EALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE-L--PPNLYYLNASSNEIR 310 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC-C--CTTCCEEECCSSCCS
T ss_pred CEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC-c--CCcCCEEECcCCcCC
Confidence 666666666553 3332 2455555555555554211 1 134555555555544
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.8e-39 Score=368.05 Aligned_cols=427 Identities=21% Similarity=0.254 Sum_probs=235.9
Q ss_pred ccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCC
Q 036642 113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFL 192 (938)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L 192 (938)
-.+.++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|.+++++++|+++++.+|.. .++
T Consensus 7 ~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l 73 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQA 73 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTC
T ss_pred ccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCC
Confidence 345689999999999994 5999999999999999999999999999999999997777766532 467
Q ss_pred CEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL 272 (938)
Q Consensus 193 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 272 (938)
++|++++|.+++++.+ .++|++|++++|.+++++. ..++|++|++++|++++. +.. .++|++|++
T Consensus 74 ~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l--~~~---~~~L~~L~L 138 (454)
T 1jl5_A 74 HELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKAL--SDL---PPLLEYLGV 138 (454)
T ss_dssp SEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCC--CSC---CTTCCEEEC
T ss_pred CEEEecCCccccCCCC------cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcc--cCC---CCCCCEEEC
Confidence 7788888877776542 3678888888888887653 237888888888887752 221 268888888
Q ss_pred cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccc
Q 036642 273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQE 352 (938)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 352 (938)
++|.+++ +| .++++++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .++++++|+.|++++|.+.+.
T Consensus 139 ~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 139 SNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC
T ss_pred cCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC
Confidence 8888885 66 58888888888888888875 55433 488888888888876 34 577888888888888877652
Q ss_pred hhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCC
Q 036642 353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDN 432 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 432 (938)
|. .+++|++|++++|.+. .+| .++.+++|++|++++|++++ +|. ..++|++|++++|++++++.
T Consensus 211 -~~--------~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~- 274 (454)
T 1jl5_A 211 -PD--------LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE- 274 (454)
T ss_dssp -CC--------CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC-
T ss_pred -CC--------CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCc-
Confidence 21 1126666666666666 344 25666666666666666664 332 12556666666666655432
Q ss_pred CCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCc
Q 036642 433 WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 512 (938)
Q Consensus 433 ~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~ 512 (938)
. .++|++|++++|.+++ +|. ..++|+.|++++|++++.. .+ .++|+
T Consensus 275 -----------------------~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i~-~~--~~~L~ 320 (454)
T 1jl5_A 275 -----------------------L---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSLC-DL--PPSLE 320 (454)
T ss_dssp -----------------------C---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEEC-CC--CTTCC
T ss_pred -----------------------c---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCccc-CC--cCcCC
Confidence 1 2456666666666664 111 1245677777777666522 11 13577
Q ss_pred eeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC--ccchhhhcCCCCCEEEcC
Q 036642 513 VLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELTDCWMNYQNLMILDLS 590 (938)
Q Consensus 513 ~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls 590 (938)
+|++++|++++ +|..+++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+.. ++
T Consensus 321 ~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~-lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~ 383 (454)
T 1jl5_A 321 ELNVSNNKLIE-LPALPPRLERLIASFNHLAE-VPE-------LPQNLKQLHVEYNPLREFPDIPESVED--------LR 383 (454)
T ss_dssp EEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSSCCCCCTTCCE--------EE
T ss_pred EEECCCCcccc-ccccCCcCCEEECCCCcccc-ccc-------hhhhccEEECCCCCCCcCCCChHHHHh--------hh
Confidence 77777777775 55556777777777777764 332 25677888888888776 55554432 23
Q ss_pred CCcccccCCcccCCCCCCcEEEcccccccc--cccccccCcCCcEEECCCCccCCCCChhHh
Q 036642 591 NNKFTGNLPISLGSLISLQSLHLRKNNLSG--TIHSLKNCTALLTLDVGENEFVENIPTWIG 650 (938)
Q Consensus 591 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 650 (938)
.|.+.+.+|.. +++|+.|++++|++++ .+| ++++.|++++|.+.+.+|.+..
T Consensus 384 ~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 384 MNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP-----ESVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp CCC-----------------------------------------------------------
T ss_pred hcccccccccc---cCcCCEEECCCCcCCccccch-----hhHhheeCcCcccCCccccCHH
Confidence 45566666653 4788999999999887 444 3567778888888887776654
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-39 Score=353.36 Aligned_cols=293 Identities=27% Similarity=0.384 Sum_probs=223.9
Q ss_pred CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CcEEEEecCCCCCccCCccCCCCCCcccCc-
Q 036642 33 GCLESERRALLRFKQDLQDPSNRLASWIGYEDCCA--WAGVVCDNVT--GHIVELNLRNPFTYCDLSQSKANPRSMLVG- 107 (938)
Q Consensus 33 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g- 107 (938)
.|.++|++||++||+++.||. .+.+|..+++||. |.||+|+..+ ++|+.+++++. .+.|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~---------------~l~~~ 65 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL---------------NLPKP 65 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC---------------CCSSC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC---------------CccCC
Confidence 599999999999999998876 7899976689998 9999998655 89999999984 7778
Q ss_pred -cccCCccCCCCCCEEeCCC-CCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccc
Q 036642 108 -KVNPSLLDLKHLSYLDLSY-NDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWW 185 (938)
Q Consensus 108 -~l~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~ 185 (938)
.+|+.+.++++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..|+++++|++|++++|.+....+..
T Consensus 66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 66 YPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp EECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 8999999999999999995 999874 8999999999999999999999999999999999999999999998777777
Q ss_pred cCCCCCCCEEeCCCCCCCCCcchhhhhCCCC-CCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCC
Q 036642 186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLP-SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGL 264 (938)
Q Consensus 186 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 264 (938)
+..+++|++|++++|.+++. ++..+..++ +|++|++++|++++..+..+..++ |++|++++|.+.+.. +..+..+
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~-~~~~~~l 220 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSD 220 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC-GGGCCTT
T ss_pred HhcCCCCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC-CHHHhcC
Confidence 77778888888877777632 224455555 677777777776666666666665 666666666665543 5666666
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeec
Q 036642 265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML 344 (938)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 344 (938)
++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|.++..+++|++|++++|++++.+|.. ..+++|+.+++
T Consensus 221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 6666666666666654444 555666666666666666666666666666666666666666655554 55566666666
Q ss_pred CCCc
Q 036642 345 SCVK 348 (938)
Q Consensus 345 ~~n~ 348 (938)
++|.
T Consensus 299 ~~N~ 302 (313)
T 1ogq_A 299 ANNK 302 (313)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6554
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.6e-38 Score=359.32 Aligned_cols=356 Identities=19% Similarity=0.175 Sum_probs=266.0
Q ss_pred ccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeec
Q 036642 438 QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSL 516 (938)
Q Consensus 438 ~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L 516 (938)
++++|++++|.+.+..|..+.++++|++|++++|.+.+.++...+..+++|++|++++|++++..| .+..+++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 344444444444444555666667777777777766655555555666677777777777766655 5666677777777
Q ss_pred CCccCccCCCC-----CCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcC--CCCCEEEc
Q 036642 517 GSNSFSGALPL-----ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNY--QNLMILDL 589 (938)
Q Consensus 517 ~~n~l~~~~p~-----~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l--~~L~~L~L 589 (938)
++|.+++..+. .+++|++|++++|.+++..|.. .+..+++|++|++++|++++..+..+..+ .+|+.|++
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS---FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG---GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCccc---ccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 77776653221 2456777777777776654422 14567888888888888887777777665 67888888
Q ss_pred CCCcccccCCccc--------CCCCCCcEEEccccccccccc-ccccC---cCCcEEECCCCccCCCC----------Ch
Q 036642 590 SNNKFTGNLPISL--------GSLISLQSLHLRKNNLSGTIH-SLKNC---TALLTLDVGENEFVENI----------PT 647 (938)
Q Consensus 590 s~n~l~~~~p~~~--------~~l~~L~~L~L~~n~l~~~~~-~l~~l---~~L~~L~Ls~N~l~~~~----------p~ 647 (938)
++|.+.+..+..+ ..+++|++|++++|++++..+ .+... ++|+.|++++|...+.. +.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 8888876554432 356788888888888887666 44433 77888888887654421 11
Q ss_pred hHh-hhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCC
Q 036642 648 WIG-ERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRA 726 (938)
Q Consensus 648 ~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 726 (938)
.+. ...++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------- 325 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL---------------------- 325 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----------------------
Confidence 111 023689999999999999889999999999999999999998888787776665
Q ss_pred cchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEE
Q 036642 727 PSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESID 806 (938)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~Ld 806 (938)
+.|++++|++++..|..++++++|+.|+|++|++++..|..|+.+++|++||
T Consensus 326 ----------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 326 ----------------------------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp ----------------------------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ----------------------------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 7899999999988899999999999999999999999999999999999999
Q ss_pred CCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcC
Q 036642 807 FSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQL 846 (938)
Q Consensus 807 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 846 (938)
|++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999877778899999999999999999999965444
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.5e-38 Score=359.82 Aligned_cols=376 Identities=20% Similarity=0.186 Sum_probs=242.6
Q ss_pred CCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEE
Q 036642 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL 295 (938)
Q Consensus 216 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 295 (938)
++|++|++++|.++++.+..|.++++|++|++++|.+.+.+.+..+. .+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~------------------------~l~~L~~L~ 85 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR------------------------GLSSLIILK 85 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT------------------------TCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc------------------------ccccCCEEe
Confidence 45555555555555555555555555555555555554433333444 444555555
Q ss_pred CcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHh--hhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEc
Q 036642 296 LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRS--MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVL 373 (938)
Q Consensus 296 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l 373 (938)
+++|.+++..|..++++++|++|++++|.+++..+.. ++.+++|+.|++++|.+.+.
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------------- 144 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI--------------------- 144 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC---------------------
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc---------------------
Confidence 5555544444455555555555555555555433332 44444444444333333322
Q ss_pred cCCcCccccccc-cCCCCCccEEEccCCeecccccccccCC--CCCcEEEccCccCCCCCCCCCCccccceeecccccCC
Q 036642 374 RGSSVSGHLTYK-LGQFKNLYYLDLSNNSIVGPIPFSLGHL--STLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLG 450 (938)
Q Consensus 374 ~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~ 450 (938)
.|.. ++.+++|++|++++|++++..+..+..+ .+|+.|++++|.+.+.+..+...
T Consensus 145 --------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-------------- 202 (455)
T 3v47_A 145 --------QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-------------- 202 (455)
T ss_dssp --------CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------
T ss_pred --------CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc--------------
Confidence 2222 4455566666666666665555555544 56666777776666654332211
Q ss_pred CCCCcccCCCCCCcEEEccCcccccccchhHhhcC--cCccEEecccccccccCCCccccccCceeecCCccCccCCCCC
Q 036642 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSA--SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLI 528 (938)
Q Consensus 451 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~ 528 (938)
.....+..+++|++|++++|.+++..|..+.... ++|+.|++++|...+..... +.+.+..+.
T Consensus 203 -~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~- 267 (455)
T 3v47_A 203 -EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-------------TNFKDPDNF- 267 (455)
T ss_dssp -HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-------------CSSCCCCTT-
T ss_pred -cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch-------------hhhccCccc-
Confidence 0011234567888888888888887777765432 56777777776654422111 111110000
Q ss_pred CCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCC
Q 036642 529 SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 608 (938)
Q Consensus 529 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 608 (938)
.+. -...++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|
T Consensus 268 ------------~~~----------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 268 ------------TFK----------GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp ------------TTG----------GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ------------ccc----------cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 000 0124678999999999998888889999999999999999998888899999999
Q ss_pred cEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccc
Q 036642 609 QSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLAD 687 (938)
Q Consensus 609 ~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 687 (938)
++|+|++|.+++..+ .+.++++|++|++++|++.+..|.++. .+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccC
Confidence 999999999988877 889999999999999999887787776 799999999999999987777889999999999999
Q ss_pred cccccccch
Q 036642 688 NNLSGEVPR 696 (938)
Q Consensus 688 N~l~~~~p~ 696 (938)
|++++..|.
T Consensus 405 N~l~~~~~~ 413 (455)
T 3v47_A 405 NPWDCSCPR 413 (455)
T ss_dssp SCBCCCTTT
T ss_pred CCcccCCCc
Confidence 999988873
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.6e-36 Score=343.90 Aligned_cols=412 Identities=19% Similarity=0.181 Sum_probs=235.9
Q ss_pred ccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhC
Q 036642 134 IPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTN 213 (938)
Q Consensus 134 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 213 (938)
.+..++++++|++|++++|.+++. | .++++++|++|++++|.+...+ +..+++|++|++++|.+++++ +.
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~-----~~ 103 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD-----VT 103 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-----CT
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee-----cC
Confidence 455678899999999999999864 5 6888999999999998887652 666777777777777666642 45
Q ss_pred CCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCE
Q 036642 214 TLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKH 293 (938)
Q Consensus 214 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 293 (938)
.+++|++|++++|++++++ ++.+++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|++
T Consensus 104 ~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 5666666666666666542 55556666666666655541 1445555555555555433333 2344444444
Q ss_pred EECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEc
Q 036642 294 LLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVL 373 (938)
Q Consensus 294 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l 373 (938)
|++++|.+++ +| +..+++|++|++++|.+++.
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--------------------------------------------- 206 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--------------------------------------------- 206 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---------------------------------------------
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCcCCee---------------------------------------------
Confidence 4444444443 22 33344444444444433321
Q ss_pred cCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCC
Q 036642 374 RGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRF 453 (938)
Q Consensus 374 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~ 453 (938)
.++.+++|++|++++|++++ +| +..+++|++|++++|++++.+
T Consensus 207 -----------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~----------------------- 249 (457)
T 3bz5_A 207 -----------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD----------------------- 249 (457)
T ss_dssp -----------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-----------------------
T ss_pred -----------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-----------------------
Confidence 13344555555555555554 33 455555555555555555432
Q ss_pred CcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCc
Q 036642 454 PSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLI 533 (938)
Q Consensus 454 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~ 533 (938)
+..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|....+|+
T Consensus 250 ---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 250 ---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp ---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred ---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcce
Confidence 122333444443332 12334444444443333 23345555555655555555554445555
Q ss_pred EEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEc
Q 036642 534 ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHL 613 (938)
Q Consensus 534 ~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 613 (938)
.|++++| ++|++|++++|++++. + +.++++|+.|++++|++++ ++.|+.|++
T Consensus 311 ~L~l~~~-----------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l 362 (457)
T 3bz5_A 311 ELDLSQN-----------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPA 362 (457)
T ss_dssp CCCCTTC-----------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSG
T ss_pred Eechhhc-----------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccc
Confidence 5554433 5678888888888873 3 7778888888888888875 245666778
Q ss_pred ccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCc--cccCCC-----ccCeeecc
Q 036642 614 RKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK--GLCDLA-----FLQIVDLA 686 (938)
Q Consensus 614 ~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~-----~L~~L~Ls 686 (938)
++|.+.|. .++..|..+++++|+++|.+|..+.+...++....-..+........ .+.+++ -+.....+
T Consensus 363 ~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~ 438 (457)
T 3bz5_A 363 LNNNFEAE----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSE 438 (457)
T ss_dssp GGTSEEEE----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECT
T ss_pred cCCcEEec----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecC
Confidence 88888775 35566777888888888888877654455555444443322211100 011111 12223334
Q ss_pred ccccccccchhhhc
Q 036642 687 DNNLSGEVPRCIHN 700 (938)
Q Consensus 687 ~N~l~~~~p~~l~~ 700 (938)
+|.++|.++..+..
T Consensus 439 ~~~fsG~i~~p~~~ 452 (457)
T 3bz5_A 439 NGAIVGTVTTPFEA 452 (457)
T ss_dssp TSSEEEEEEEEBC-
T ss_pred CcEEeeEecccccc
Confidence 78888888765543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=338.82 Aligned_cols=357 Identities=19% Similarity=0.162 Sum_probs=248.7
Q ss_pred cccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCC
Q 036642 384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHL 463 (938)
Q Consensus 384 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L 463 (938)
..++.+++|++|++++|.+++. | .+..+++|++|++++|++++++ +....+|++|++++|.+.+. + +..+++|
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 3455566666666666666643 3 4666666666666666666653 44455566666666665543 2 5667777
Q ss_pred cEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCC-CCCCCcEEEccCCcc
Q 036642 464 NYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPL-ISSNLIELDFSNNSI 542 (938)
Q Consensus 464 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~-~~~~L~~L~ls~n~l 542 (938)
++|++++|++++ +| +..+++|++|++++|++++. .+..+++|++|++++|...+.++. .+++|++|++++|++
T Consensus 109 ~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence 777777777765 33 35566777777777777663 355666777777777754444432 256677777777777
Q ss_pred ccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccc
Q 036642 543 SGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI 622 (938)
Q Consensus 543 ~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 622 (938)
++. + +..+++|++|++++|++++. .+..+++|+.|++++|++++ +| ++.+++|+.|++++|++++.+
T Consensus 183 ~~l-~------l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 183 TEL-D------VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CCC-C------CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred cee-c------cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 652 1 45567777777777777754 26677777777777777776 45 667777777777777777653
Q ss_pred cccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcch
Q 036642 623 HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLR 702 (938)
Q Consensus 623 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 702 (938)
+..+++|+.|++++| +|+.|++++|++.+.+| +..+++|+.|++++|+..+.+|....
T Consensus 250 --~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~--- 307 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAA--- 307 (457)
T ss_dssp --CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTC---
T ss_pred --HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCC---
Confidence 445667777776654 35667788888777776 46788999999999998888885433
Q ss_pred hhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEe
Q 036642 703 AMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFN 782 (938)
Q Consensus 703 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 782 (938)
.++.+++++ .+.|+.|++++|++++ +| ++++++|+.|+
T Consensus 308 ~L~~L~l~~---------------------------------------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 308 GITELDLSQ---------------------------------------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLS 345 (457)
T ss_dssp CCSCCCCTT---------------------------------------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEE
T ss_pred cceEechhh---------------------------------------cccCCEEECCCCcccc-cc--cccCCcCcEEE
Confidence 343333321 2346899999999998 44 99999999999
Q ss_pred CcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCC
Q 036642 783 LSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS 843 (938)
Q Consensus 783 Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 843 (938)
+++|++++ ++.|+.|++++|.++|. .++..|+.+++++|+++|.||..
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 99999996 35677889999999987 34566888999999999999964
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.6e-34 Score=327.65 Aligned_cols=344 Identities=26% Similarity=0.364 Sum_probs=244.5
Q ss_pred CccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeeccc
Q 036642 367 GLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRH 446 (938)
Q Consensus 367 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~ 446 (938)
+++.|++.++.+... | .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 47 ~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----------------- 105 (466)
T 1o6v_A 47 QVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI----------------- 105 (466)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------
T ss_pred cccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-----------------
Confidence 566677766666542 2 25566666666666666665433 66666666666666666553
Q ss_pred ccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCC
Q 036642 447 CHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALP 526 (938)
Q Consensus 447 ~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p 526 (938)
.+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +.+..+++|++|+++ |.+.+.
T Consensus 106 ------~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~-~~~~~~-- 170 (466)
T 1o6v_A 106 ------TP--LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFG-NQVTDL-- 170 (466)
T ss_dssp ------GG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEE-ESCCCC--
T ss_pred ------hh--hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecC-CcccCc--
Confidence 22 5666777777777777664432 35566777777777766642 345555555555553 222211
Q ss_pred CCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCC
Q 036642 527 LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 606 (938)
Q Consensus 527 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 606 (938)
..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..| ++.++
T Consensus 171 -------------------------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 221 (466)
T 1o6v_A 171 -------------------------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILT 221 (466)
T ss_dssp -------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCT
T ss_pred -------------------------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccC
Confidence 1145567777777777777643 236777888888888888776544 66678
Q ss_pred CCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecc
Q 036642 607 SLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA 686 (938)
Q Consensus 607 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 686 (938)
+|+.|++++|++++ ++.+..+++|+.|++++|++.+..| +. .+++|+.|++++|++++..+ +..+++|+.|+++
T Consensus 222 ~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 222 NLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp TCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 88888888888775 3567778888888888888876544 33 68888888888888887544 7788899999999
Q ss_pred ccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCc
Q 036642 687 DNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSG 766 (938)
Q Consensus 687 ~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g 766 (938)
+|++++..| +..+++ |+.|++++|++++
T Consensus 296 ~n~l~~~~~--~~~l~~--------------------------------------------------L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 296 ENQLEDISP--ISNLKN--------------------------------------------------LTYLTLYFNNISD 323 (466)
T ss_dssp SSCCSCCGG--GGGCTT--------------------------------------------------CSEEECCSSCCSC
T ss_pred CCcccCchh--hcCCCC--------------------------------------------------CCEEECcCCcCCC
Confidence 998886443 444333 3788999999997
Q ss_pred cCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCccccc
Q 036642 767 KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK 839 (938)
Q Consensus 767 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 839 (938)
..| ++.+++|+.|++++|.+++. +.++++++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 666 78899999999999999975 478899999999999999998877 88999999999999999973
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.1e-35 Score=336.36 Aligned_cols=322 Identities=20% Similarity=0.173 Sum_probs=159.9
Q ss_pred EEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEeccccc
Q 036642 418 FIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ 497 (938)
Q Consensus 418 ~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 497 (938)
.++.+++.++.+|..+ +..++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+ ..+++|++|++++|+
T Consensus 15 ~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCc
Confidence 4444455554444322 1233344444444433444455555555555555555554434332 334444444444444
Q ss_pred ccccCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccch
Q 036642 498 IHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTD 576 (938)
Q Consensus 498 l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 576 (938)
++...+ .+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLD-------------------------YMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECT-------------------------TTTTTCTTCCEEEECCTTCCEECTT
T ss_pred CCccCcccccCCCCCCEEECCCCccccCCh-------------------------hHccccccCCEEECCCCccceeChh
Confidence 443332 12333333333333333222111 1223345555555555555554455
Q ss_pred hhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCc
Q 036642 577 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSR 655 (938)
Q Consensus 577 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~ 655 (938)
.|.++++|++|++++|++++..+..+..+++|+.|+|++|.+.+..+ .+..+++|+.|++++|++.+.+|.
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------- 218 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-------- 218 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT--------
T ss_pred hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc--------
Confidence 55555555555555555554444445555555555555555554444 445555555555555544444444
Q ss_pred ccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccc
Q 036642 656 MVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED 735 (938)
Q Consensus 656 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (938)
......+|+.|++++|++++..+..+..+++|
T Consensus 219 -----------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------- 250 (477)
T 2id5_A 219 -----------------NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL------------------------------- 250 (477)
T ss_dssp -----------------TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-------------------------------
T ss_pred -----------------ccccCccccEEECcCCcccccCHHHhcCcccc-------------------------------
Confidence 33334455555555555553222333333332
Q ss_pred eeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642 736 ALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE 815 (938)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 815 (938)
+.|+|++|++++..+..+..+++|+.|+|++|++++..|..|+.+++|+.|||++|++++.
T Consensus 251 -------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 251 -------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp -------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred -------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCcee
Confidence 4555556665555555556666666666666666666666666666666666666666655
Q ss_pred CCccccCCCCCCeEeCcCCcccccCCC
Q 036642 816 IPQSMSSLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 816 ip~~l~~l~~L~~L~ls~N~l~g~ip~ 842 (938)
.+..|..+++|++|++++|++.|.++.
T Consensus 312 ~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 312 EESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred CHhHcCCCcccCEEEccCCCccCccch
Confidence 555556666666666666666665543
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.7e-33 Score=321.91 Aligned_cols=344 Identities=22% Similarity=0.296 Sum_probs=156.5
Q ss_pred CCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEe
Q 036642 117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLD 196 (938)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 196 (938)
++++.|+++++.+.. +|. +..+++|++|++++|.+++..| ++++++|++|++++|.+....+ +.++++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 344455555544442 232 3444455555555555443322 4455555555555554443332 44444555555
Q ss_pred CCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCc
Q 036642 197 LSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN 276 (938)
Q Consensus 197 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 276 (938)
+++|.++..+. +..+++|++|++++|.+++++ .+.++++|++|+++ |.+.+ ...+.++++|++|++++|.
T Consensus 119 L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~---~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 119 LFNNQITDIDP----LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTD---LKPLANLTTLERLDISSNK 188 (466)
T ss_dssp CCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCC---CGGGTTCTTCCEEECCSSC
T ss_pred CCCCCCCCChH----HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccC---chhhccCCCCCEEECcCCc
Confidence 55544444321 444455555555555544432 24455555555553 22322 1124455555555555555
Q ss_pred ccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhH
Q 036642 277 FQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI 356 (938)
Q Consensus 277 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 356 (938)
+++. ..+..+++|++|++++|.+++..| ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 4432 224455555555555555544333 44455555555555555432 234445555555555554444322
Q ss_pred HHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCc
Q 036642 357 FDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP 436 (938)
Q Consensus 357 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 436 (938)
+..++ +|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++.++ +...
T Consensus 261 ----~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l 330 (466)
T 1o6v_A 261 ----LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSL 330 (466)
T ss_dssp ----GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGC
T ss_pred ----hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccC
Confidence 11222 45555555555444333 4455556666666665554332 4555556666666555554322 1222
Q ss_pred cccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccc
Q 036642 437 FQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHG 500 (938)
Q Consensus 437 ~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 500 (938)
.+|+.|++++|.+.+. ..+..+++|+.|++++|++++..| ...+++|+.|++++|.+++
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence 2233333333333221 234444444555555544444433 2334444444444444443
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-34 Score=313.25 Aligned_cols=257 Identities=29% Similarity=0.530 Sum_probs=239.8
Q ss_pred CCcceeeccCccCCC--ccchhhhcCCCCCEEEcCC-CcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcE
Q 036642 558 KKLQFLYLRGNFLQG--ELTDCWMNYQNLMILDLSN-NKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLT 633 (938)
Q Consensus 558 ~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~ 633 (938)
.++++|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|+|++|++++.+| .+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578899999999998 8999999999999999995 99999999999999999999999999998888 8999999999
Q ss_pred EECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCC-ccCeeeccccccccccchhhhcchhhhhcccccc
Q 036642 634 LDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA-FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAG 712 (938)
Q Consensus 634 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~ 712 (938)
|++++|.+.+.+|..+. .+++|++|++++|++++.+|..+..++ .|+.|++++|++++.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999999999887 799999999999999999999999998 999999999999999998887654 3
Q ss_pred chhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccC
Q 036642 713 KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI 792 (938)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i 792 (938)
+.|++++|++++.+|..++.+++|+.|+|++|.+++.+
T Consensus 200 ------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 200 ------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp ------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred ------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 78999999999999999999999999999999999877
Q ss_pred CccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcCCC-CCCCCCCCCCC
Q 036642 793 PESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAPLPRNC 868 (938)
Q Consensus 793 p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~~~~c 868 (938)
|. ++.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..+++..+....+.+| .+||.|+. .|
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 76 88999999999999999999999999999999999999999999999988999999999999 79998876 57
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=323.19 Aligned_cols=310 Identities=22% Similarity=0.179 Sum_probs=271.9
Q ss_pred cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccC
Q 036642 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP 187 (938)
Q Consensus 108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~ 187 (938)
.+|..+. +++++|||++|.++++ .|..+.++++|++|+|++|.+++..|..|+++++|++|+|++|.+.......|.
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 4565554 4899999999999975 567899999999999999999988899999999999999999999988888899
Q ss_pred CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCC
Q 036642 188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL 267 (938)
Q Consensus 188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 267 (938)
++++|++|++++|.++.... ..+..+++|++|++++|.++++.+..|.++++|++|++++|.+++.. +..+..+++|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L 178 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLD--YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGL 178 (477)
T ss_dssp TCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTC
T ss_pred CCCCCCEEECCCCccccCCh--hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCC
Confidence 99999999999999987633 57888999999999999999999999999999999999999998744 6678999999
Q ss_pred CEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCC
Q 036642 268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV 347 (938)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 347 (938)
+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 99999999999888888999999999999999988888888877889999999999999877788999999999999999
Q ss_pred cCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCC
Q 036642 348 KLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELN 427 (938)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 427 (938)
.+.+..+. .+..++ +|+.|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|++.
T Consensus 259 ~l~~~~~~----~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 259 PISTIEGS----MLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCCEECTT----SCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCCccChh----hccccc-cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 98877665 444555 7888888888888888888888888888888888888777777888888888888888876
Q ss_pred C
Q 036642 428 G 428 (938)
Q Consensus 428 ~ 428 (938)
.
T Consensus 334 c 334 (477)
T 2id5_A 334 C 334 (477)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-32 Score=306.24 Aligned_cols=312 Identities=18% Similarity=0.169 Sum_probs=226.0
Q ss_pred cCCCCCCEEeCCCCCCCCCcccc-cccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCC
Q 036642 114 LDLKHLSYLDLSYNDFQGVQIPR-FICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFL 192 (938)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L 192 (938)
..++++++|+++++.++. +|. .+..+++|++|++++|.+++..+..|+++++|++|++++|.+....+..|.++++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 357899999999999984 555 47889999999999999998888899999999999999999999888899999999
Q ss_pred CEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL 272 (938)
Q Consensus 193 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 272 (938)
++|++++|.++.++. ..+..+++|++|++++|.++++++..+.++++|++|++++|.+++. .+..+++|++|++
T Consensus 120 ~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l 193 (390)
T 3o6n_A 120 TVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANV 193 (390)
T ss_dssp CEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEEEC
T ss_pred CEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccceeec
Confidence 999999999987654 4567899999999999999999888899999999999999988753 3566788999999
Q ss_pred cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccc
Q 036642 273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQE 352 (938)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 352 (938)
++|.+++ +...++|++|++++|.+... |.. ..++|++|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 194 ~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 194 SYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred ccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc
Confidence 9988764 33456888899988888753 332 346788888888888764 4567777777777777766665
Q ss_pred hhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCC
Q 036642 353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDN 432 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 432 (938)
.|. .+..++ +|+.|++++|.+++. +..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.+
T Consensus 264 ~~~----~~~~l~-~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~--- 333 (390)
T 3o6n_A 264 MYH----PFVKMQ-RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL--- 333 (390)
T ss_dssp ESG----GGTTCS-SCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---
T ss_pred Chh----Hccccc-cCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee---
Confidence 544 223333 455555555554432 223344445555555555444 2333444444555555555444432
Q ss_pred CCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccc
Q 036642 433 WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS 476 (938)
Q Consensus 433 ~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 476 (938)
+ +..+++|++|++++|++...
T Consensus 334 ---------------------~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 334 ---------------------K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ---------------------C--CCTTCCCSEEECCSSCEEHH
T ss_pred ---------------------C--chhhccCCEEEcCCCCccch
Confidence 1 34556677777777766643
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.5e-32 Score=302.74 Aligned_cols=329 Identities=21% Similarity=0.196 Sum_probs=263.6
Q ss_pred CCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCC---CCCCcEE
Q 036642 460 QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLI---SSNLIEL 535 (938)
Q Consensus 460 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L 535 (938)
+++++.|++++|.++ .+|..++..+++|++|++++|.+++..+ .+..+++|++|++++|.+.+..|.. +++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467777888887776 5666666777888888888888877666 6777788888888888887766653 5678888
Q ss_pred EccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccc
Q 036642 536 DFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 615 (938)
Q Consensus 536 ~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 615 (938)
++++|.++...+ ..+..+++|++|++++|++++..+..+.++++|++|++++|++++. .++.+++|+.|++++
T Consensus 123 ~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 123 VLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY 195 (390)
T ss_dssp ECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred ECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence 888888774322 2246689999999999999988888899999999999999999864 356788999999999
Q ss_pred ccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642 616 NNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP 695 (938)
Q Consensus 616 n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 695 (938)
|.+++ +...++|++|++++|.+... |.. ..++|+.|++++|++++. ..+..+++|+.|++++|.+++..|
T Consensus 196 n~l~~----~~~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 196 NLLST----LAIPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SCCSE----EECCSSCSEEECCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred ccccc----cCCCCcceEEECCCCeeeec-ccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 98875 34456899999999998763 433 357899999999999874 578899999999999999998888
Q ss_pred hhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCc
Q 036642 696 RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNL 775 (938)
Q Consensus 696 ~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l 775 (938)
..+..+++| +.|++++|++++ +|..++.+
T Consensus 266 ~~~~~l~~L--------------------------------------------------~~L~L~~n~l~~-~~~~~~~l 294 (390)
T 3o6n_A 266 HPFVKMQRL--------------------------------------------------ERLYISNNRLVA-LNLYGQPI 294 (390)
T ss_dssp GGGTTCSSC--------------------------------------------------CEEECCSSCCCE-EECSSSCC
T ss_pred hHccccccC--------------------------------------------------CEEECCCCcCcc-cCcccCCC
Confidence 888777665 789999999985 78888899
Q ss_pred cCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcC
Q 036642 776 KALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYA 855 (938)
Q Consensus 776 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~ 855 (938)
++|+.|+|++|+++ .+|..++.+++|+.|++++|+++.. | +..+++|++|++++|++.|.... ..++.+....+.
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~ 369 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVD 369 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBC
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhccc
Confidence 99999999999999 6788899999999999999999864 3 77889999999999999986433 233444444455
Q ss_pred CC-CCCCC
Q 036642 856 GN-DLCGA 862 (938)
Q Consensus 856 ~n-~lc~~ 862 (938)
++ ..|..
T Consensus 370 ~~~~~c~~ 377 (390)
T 3o6n_A 370 DADQHCKI 377 (390)
T ss_dssp CCCSCCCT
T ss_pred ccCceecc
Confidence 55 55543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-31 Score=316.45 Aligned_cols=312 Identities=18% Similarity=0.155 Sum_probs=224.1
Q ss_pred CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD 194 (938)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 194 (938)
.+++++.|++++|.+..+ .+..+.++++|++|+|++|.+++..|..|+++++|++|+|++|.+....+..|.++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 567899999999999853 3345788999999999999999888889999999999999999999988888999999999
Q ss_pred EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642 195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274 (938)
Q Consensus 195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 274 (938)
|++++|.++.++. ..+..+++|++|++++|.++++++..|.++++|++|++++|.+.+. .+..+++|++|++++
T Consensus 128 L~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 128 LVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSY 201 (597)
T ss_dssp EECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEECCS
T ss_pred EEeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhhhhhhhhccc
Confidence 9999999887654 4568889999999999999999888899999999999999988763 256678889999998
Q ss_pred CcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchh
Q 036642 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEIS 354 (938)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 354 (938)
|.+++ +...++|++|++++|.+....+ .+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.+|
T Consensus 202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 202 NLLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred Ccccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH
Confidence 88764 3445678888888888874332 22 35788888888888763 556677777777777766666555
Q ss_pred hHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCC
Q 036642 355 EIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI 434 (938)
Q Consensus 355 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 434 (938)
. .++.++ +|+.|++++|.+++. |..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++++
T Consensus 272 ~----~~~~l~-~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~----- 339 (597)
T 3oja_B 272 H----PFVKMQ-RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL----- 339 (597)
T ss_dssp G----GGTTCS-SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-----
T ss_pred H----HhcCcc-CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-----
Confidence 4 233333 455555555555442 333344455555555555554 2344444445555555555544432
Q ss_pred CccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccc
Q 036642 435 PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS 476 (938)
Q Consensus 435 ~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 476 (938)
+ +..+++|+.|++++|.+.+.
T Consensus 340 -------------------~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 340 -------------------K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -------------------C--CCTTCCCSEEECCSSCEEHH
T ss_pred -------------------C--hhhcCCCCEEEeeCCCCCCh
Confidence 1 34456666667766666543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.8e-32 Score=318.88 Aligned_cols=330 Identities=21% Similarity=0.200 Sum_probs=267.9
Q ss_pred CCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCC---CCCCcEE
Q 036642 460 QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLI---SSNLIEL 535 (938)
Q Consensus 460 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L 535 (938)
+.+++.+++++|.+. .+|..++..+++|+.|++++|.+++..+ .+..+++|++|++++|.+.+..|.. +++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456777777777776 4555556667777777777777777666 6777777888888888777766643 5677888
Q ss_pred EccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccc
Q 036642 536 DFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 615 (938)
Q Consensus 536 ~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 615 (938)
++++|.+++..+ ..++.+++|++|++++|.+++..|..|.++++|+.|++++|.+++. + ++.+++|+.|++++
T Consensus 129 ~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSY 201 (597)
T ss_dssp ECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCS
T ss_pred EeeCCCCCCCCH----HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhccc
Confidence 888887775333 2346789999999999999998888999999999999999999865 2 56688999999999
Q ss_pred ccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642 616 NNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP 695 (938)
Q Consensus 616 n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 695 (938)
|.+++ +...++|+.|++++|.+.. +|.. ..++|+.|++++|++++ +..+..+++|+.|++++|.+++.+|
T Consensus 202 n~l~~----l~~~~~L~~L~ls~n~l~~-~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 202 NLLST----LAIPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SCCSE----EECCTTCSEEECCSSCCCE-EECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred Ccccc----ccCCchhheeeccCCcccc-cccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 98875 3455689999999999865 3332 24789999999999997 4788999999999999999999989
Q ss_pred hhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCc
Q 036642 696 RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNL 775 (938)
Q Consensus 696 ~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l 775 (938)
..+..+++| +.|+|++|++++ +|..++.+
T Consensus 272 ~~~~~l~~L--------------------------------------------------~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 272 HPFVKMQRL--------------------------------------------------ERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp GGGTTCSSC--------------------------------------------------CEEECTTSCCCE-EECSSSCC
T ss_pred HHhcCccCC--------------------------------------------------CEEECCCCCCCC-CCcccccC
Confidence 888877766 789999999996 78888899
Q ss_pred cCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcC
Q 036642 776 KALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYA 855 (938)
Q Consensus 776 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~ 855 (938)
++|+.|+|++|.++ .+|..++.+++|+.|||++|++++. | +..+++|++|++++|+++|.++. ..+..+....+.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~ 375 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVD 375 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBC
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccc
Confidence 99999999999999 7899999999999999999999865 3 67788999999999999987543 245666666677
Q ss_pred CC-CCCCCC
Q 036642 856 GN-DLCGAP 863 (938)
Q Consensus 856 ~n-~lc~~~ 863 (938)
++ ..|+.+
T Consensus 376 ~~~~~C~~~ 384 (597)
T 3oja_B 376 DADQHCKID 384 (597)
T ss_dssp CCCCCCCTT
T ss_pred cccccCCcc
Confidence 87 788764
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3e-30 Score=284.98 Aligned_cols=286 Identities=24% Similarity=0.254 Sum_probs=193.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCC
Q 036642 113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFL 192 (938)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L 192 (938)
+..+++|++|+++++.+.. +|. +..+++|++|++++|.+++..+ +.++++|++|++++|.+... ..+.++++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 4467788999999888874 443 7788899999999988885433 88888899999988887764 457888888
Q ss_pred CEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL 272 (938)
Q Consensus 193 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 272 (938)
++|++++|.++..+. +..+++|++|++++|......+ .+..+++|++|++++|.+.+.. .+..+++|++|++
T Consensus 113 ~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l 184 (347)
T 4fmz_A 113 RELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSL 184 (347)
T ss_dssp SEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEEC
T ss_pred CEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEc
Confidence 888888888877643 6678888888888885544433 3777888888888888776632 2677788888888
Q ss_pred cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccc
Q 036642 273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQE 352 (938)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 352 (938)
++|.+.+. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+.
T Consensus 185 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 185 NYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp TTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred cCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 88877643 22 6777788888888887775444 6777788888888887776544 66777777777777766553
Q ss_pred hhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCC
Q 036642 353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNG 428 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 428 (938)
+ .+..++ +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 259 -~-----~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 259 -N-----AVKDLT-KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp -G-----GGTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred -h-----hHhcCC-CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 1 122222 455555555554443 224445555555555555554444445555555555555554443
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=5e-32 Score=295.21 Aligned_cols=277 Identities=20% Similarity=0.217 Sum_probs=180.5
Q ss_pred CcHHHHHHHHHhhhcCC-CCCCCCCCC----CCCCCCccccceeeCC--------CCCcEEEEecCCCCCccCCccCCCC
Q 036642 34 CLESERRALLRFKQDLQ-DPSNRLASW----IGYEDCCAWAGVVCDN--------VTGHIVELNLRNPFTYCDLSQSKAN 100 (938)
Q Consensus 34 ~~~~~~~~ll~~k~~~~-~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~l~L~~~~~~~~~~~~~~~ 100 (938)
+..+|++||++||+++. |+.+.+.+| ....++|.|.|+.|+. ...+|+.++|++.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n------------ 91 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV------------ 91 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS------------
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC------------
Confidence 56789999999999984 776666788 3447899999999952 3468889999873
Q ss_pred CCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccc
Q 036642 101 PRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYV 180 (938)
Q Consensus 101 ~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~ 180 (938)
.+. .+|+.++++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|++..
T Consensus 92 ---~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~ 164 (328)
T 4fcg_A 92 ---PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164 (328)
T ss_dssp ---CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC
T ss_pred ---Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc
Confidence 333 78888888999999999999988 47888889999999999999988 778889999999999999877655
Q ss_pred cCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCccc
Q 036642 181 ENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNW 260 (938)
Q Consensus 181 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 260 (938)
..+..+.. .. ....+..+++|++|++++|+++.+ |..+.++++|++|++++|.+.+ ++..
T Consensus 165 ~~p~~~~~------~~-----------~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~--l~~~ 224 (328)
T 4fcg_A 165 ELPEPLAS------TD-----------ASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA--LGPA 224 (328)
T ss_dssp CCCSCSEE------EC------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCC--CCGG
T ss_pred ccChhHhh------cc-----------chhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCc--Cchh
Confidence 54443332 00 001122344444444444444432 2234555555555555555543 2344
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCC
Q 036642 261 VFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR 340 (938)
Q Consensus 261 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 340 (938)
+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred eeecCCCcC
Q 036642 341 SVMLSCVKL 349 (938)
Q Consensus 341 ~L~L~~n~l 349 (938)
.+++..+.+
T Consensus 305 ~l~l~~~~~ 313 (328)
T 4fcg_A 305 IILVPPHLQ 313 (328)
T ss_dssp EEECCGGGS
T ss_pred EEeCCHHHH
Confidence 555554433
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-29 Score=280.04 Aligned_cols=307 Identities=20% Similarity=0.294 Sum_probs=208.6
Q ss_pred ccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCC
Q 036642 138 ICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217 (938)
Q Consensus 138 l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~ 217 (938)
+..+++|++|++++|.+.. +| .+..+++|++|++++|.+..... +..+++|++|++++|.++.++ .+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~----~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS----ALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTT
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch----HHcCCCc
Confidence 4578899999999999884 44 48889999999999998876654 888888888888888887753 4777888
Q ss_pred CcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECc
Q 036642 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLD 297 (938)
Q Consensus 218 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 297 (938)
|++|++++|.++++++ +..+++|++|++++|..... ...+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC--CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCccc--ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 8888888888877755 77788888888888754432 3346777777777777777764332 6677777777777
Q ss_pred CCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCc
Q 036642 298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSS 377 (938)
Q Consensus 298 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 377 (938)
+|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-------------------------- 235 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-------------------------- 235 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--------------------------
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC--------------------------
Confidence 777764333 6667777777777777665443 5555555555555555443
Q ss_pred CccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCccc
Q 036642 378 VSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWL 457 (938)
Q Consensus 378 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l 457 (938)
..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++++ .+
T Consensus 236 ---~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-------------------------~~ 283 (347)
T 4fmz_A 236 ---LSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-------------------------VL 283 (347)
T ss_dssp ---CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-------------------------GG
T ss_pred ---Ccc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-------------------------hh
Confidence 322 56677777888888777753 35777778888888887776531 24
Q ss_pred CCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCc
Q 036642 458 HSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 522 (938)
Q Consensus 458 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~ 522 (938)
..+++|++|++++|.+++..+..+ ..+++|+.|++++|++++..| +..+++|++|++++|.++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 445556666666666654444433 445666666666666665544 555666666666666654
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.2e-33 Score=323.16 Aligned_cols=308 Identities=18% Similarity=0.129 Sum_probs=167.1
Q ss_pred cCCCCCCcEEEccCcccccccchhHhhcCc----CccEEecccccccc----cCC-CccccccCceeecCCccCccCCC-
Q 036642 457 LHSQKHLNYLDLSYSGITGSIPNIFWSSAS----QIYVLDLSFNQIHG----QIP-NLTNAAQLEVLSLGSNSFSGALP- 526 (938)
Q Consensus 457 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~----~L~~L~Ls~n~l~~----~~~-~l~~~~~L~~L~L~~n~l~~~~p- 526 (938)
+..+++|++|++++|.+.+..+..+...++ +|++|++++|+++. .++ .+..+++|++|++++|.+.+..+
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 334444444444444444433333333333 35555555555442 112 34444555555555555442111
Q ss_pred -------CCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh-----cCCCCCEEEcCCCcc
Q 036642 527 -------LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM-----NYQNLMILDLSNNKF 594 (938)
Q Consensus 527 -------~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l 594 (938)
...++|++|++++|.+++.....+...+..+++|++|++++|.+++..+..+. ..++|++|++++|.+
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 11235666666666666655555555566667777777777776654443332 245677777777776
Q ss_pred ccc----CCcccCCCCCCcEEEcccccccccc-----c-ccccCcCCcEEECCCCccCCC----CChhHhhhcCcccEEe
Q 036642 595 TGN----LPISLGSLISLQSLHLRKNNLSGTI-----H-SLKNCTALLTLDVGENEFVEN----IPTWIGERFSRMVVLI 660 (938)
Q Consensus 595 ~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----~-~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~~l~~L~~L~ 660 (938)
++. ++..+..+++|++|++++|.+++.. + ....+++|++|++++|.+++. ++..+. .+++|++|+
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~ 290 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELS 290 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEE
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEE
Confidence 643 3555556677777777777665431 1 222456666777776666543 343333 456666666
Q ss_pred eCCCcccccCCccccC-----CCccCeeecccccccccc----chhhhcchhhhhccccccchhhhhhhhccCCCcchhh
Q 036642 661 LRSNKFHSLLPKGLCD-----LAFLQIVDLADNNLSGEV----PRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAM 731 (938)
Q Consensus 661 L~~n~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 731 (938)
+++|++++..+..+.. .++|+.|++++|.+++.. |..+..+
T Consensus 291 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~------------------------------ 340 (461)
T 1z7x_W 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN------------------------------ 340 (461)
T ss_dssp CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC------------------------------
T ss_pred CCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC------------------------------
Confidence 6666665443333322 246666666666665432 2222222
Q ss_pred cccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccC-----ccCCCEEeCcCccCcc----cCCccccccCCC
Q 036642 732 LLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTN-----LKALQSFNLSNNFFTG----RIPESIGAMRSL 802 (938)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L 802 (938)
+.|+.||+++|++++..+..+.. .++|+.|+|++|.+++ .+|..+..+++|
T Consensus 341 --------------------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 341 --------------------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp --------------------SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred --------------------CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 22356666666666544444432 4566777777776665 566666666677
Q ss_pred CEEECCCCccccc
Q 036642 803 ESIDFSLNQLSGE 815 (938)
Q Consensus 803 ~~LdLs~N~l~~~ 815 (938)
++||+++|++++.
T Consensus 401 ~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 401 RELDLSNNCLGDA 413 (461)
T ss_dssp CEEECCSSSCCHH
T ss_pred cEEECCCCCCCHH
Confidence 7777777766654
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.5e-32 Score=314.37 Aligned_cols=361 Identities=18% Similarity=0.081 Sum_probs=158.0
Q ss_pred CCCcEEEcCCCCCCCCCccc-ccCCCCCCEEECCCCCCCCc---cCcccccCCCCCCEEEccCCcccCCCCccccCCCCC
Q 036642 216 PSLVKLRLSRCQLHHLPPLA-IANFSTLTTLDLLYNQFDNS---FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291 (938)
Q Consensus 216 ~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 291 (938)
++|++|++++|+++...... +..+++|++|++++|.+++. .++..+..+++|++|++++|.+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~------------ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD------------ 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh------------
Confidence 34556666666555443322 44555555555555555431 113334444555555555554443
Q ss_pred CEEECcCCcCCCccchhhh-cCC----CCCEEEccCCcCCc----hhhHhhhccCCCCeeecCCCcCccchhhHHHhhhc
Q 036642 292 KHLLLDSNRFNSSIPNWLY-RFN----RLESLGVSNNSLQG----RVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSG 362 (938)
Q Consensus 292 ~~L~L~~n~l~~~~p~~l~-~l~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 362 (938)
..+..+. .++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+...+.
T Consensus 71 ------------~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 71 ------------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp ------------HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 2222221 222 34455555554442 23444444555555555555444333322211111
Q ss_pred ccccCccEEEccCCcCcccc----ccccCCCCCccEEEccCCeeccccccccc-----CCCCCcEEEccCccCCCCCCCC
Q 036642 363 CVSSGLEILVLRGSSVSGHL----TYKLGQFKNLYYLDLSNNSIVGPIPFSLG-----HLSTLQFIDLSYNELNGMNDNW 433 (938)
Q Consensus 363 ~~~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~ 433 (938)
...++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+. ..++|++|++++|.++.....
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~- 217 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR- 217 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-
Confidence 11113445555544444322 23344455666666666665543333322 244566666665555432000
Q ss_pred CCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccc----hhHhhcCcCccEEeccccccccc----CC-C
Q 036642 434 IPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIP----NIFWSSASQIYVLDLSFNQIHGQ----IP-N 504 (938)
Q Consensus 434 ~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~-~ 504 (938)
.++..+..+++|++|++++|.+++... ..++..+++|++|++++|.++.. ++ .
T Consensus 218 ------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 218 ------------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp ------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred ------------------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 123444555666666666666554322 12222345566666666655542 11 2
Q ss_pred ccccccCceeecCCccCccCCC--------CCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccch
Q 036642 505 LTNAAQLEVLSLGSNSFSGALP--------LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTD 576 (938)
Q Consensus 505 l~~~~~L~~L~L~~n~l~~~~p--------~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 576 (938)
+..+++|++|++++|.+.+..+ ...++|++|++++|.+++.....++..+..+++|++|++++|.+++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 3334445555555444432111 11134444444444444433333333344444555555555544433332
Q ss_pred hhhc-----CCCCCEEEcCCCcccc----cCCcccCCCCCCcEEEccccccc
Q 036642 577 CWMN-----YQNLMILDLSNNKFTG----NLPISLGSLISLQSLHLRKNNLS 619 (938)
Q Consensus 577 ~~~~-----l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~ 619 (938)
.+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 2221 3344444444444443 33334444444444444444443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.6e-29 Score=274.12 Aligned_cols=290 Identities=21% Similarity=0.250 Sum_probs=238.0
Q ss_pred CCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEe
Q 036642 117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLD 196 (938)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 196 (938)
.++++++++++.++ .+|..+ .++|++|++++|.+++..|..|+++++|++|++++|.+....+..|.++++|++|+
T Consensus 33 c~l~~l~~~~~~l~--~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK--AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS--SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc--ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 37899999999998 577765 37999999999999988888999999999999999999998889999999999999
Q ss_pred CCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCC-ccCcccccCCCCCCEEEccCC
Q 036642 197 LSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN-SFVPNWVFGLIQLVFLDLRRN 275 (938)
Q Consensus 197 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n 275 (938)
+++|.++.++. .+. ++|++|++++|+++.+++..+.++++|++|++++|.++. ...+..+..+ +|++|++++|
T Consensus 109 L~~n~l~~l~~---~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 109 ISKNHLVEIPP---NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CCSSCCCSCCS---SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CCCCcCCccCc---ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 99999987654 222 799999999999999999999999999999999999863 1236667777 9999999999
Q ss_pred cccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhh
Q 036642 276 NFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISE 355 (938)
Q Consensus 276 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 355 (938)
.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++. .+|.
T Consensus 183 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 183 KLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp BCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred CCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 9985 565554 78999999999999888888999999999999999999888888999999999999999887 4444
Q ss_pred HHHhhhcccccCccEEEccCCcCccccccccCC------CCCccEEEccCCeec--ccccccccCCCCCcEEEccCcc
Q 036642 356 IFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQ------FKNLYYLDLSNNSIV--GPIPFSLGHLSTLQFIDLSYNE 425 (938)
Q Consensus 356 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~ 425 (938)
.+..++ +|+.|++++|.+++..+..+.. .+.|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 259 ----~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 ----GLPDLK-LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ----TGGGCT-TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ----hhhcCc-cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 334444 7888888888887766655543 356777888887776 5566677777777777777664
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.8e-29 Score=273.99 Aligned_cols=286 Identities=21% Similarity=0.246 Sum_probs=211.2
Q ss_pred CCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCC
Q 036642 462 HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNN 540 (938)
Q Consensus 462 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n 540 (938)
+++.++++++.++ .+|..+ .++++.|++++|.+++..+ .+..+++|++|++++|.+++..|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------- 95 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-------------- 95 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------------
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------------
Confidence 4566666666655 444433 2456666666666655544 45555555555555554443322
Q ss_pred ccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccc
Q 036642 541 SISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG 620 (938)
Q Consensus 541 ~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 620 (938)
..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.++.
T Consensus 96 -----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 96 -----------KAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp -----------GGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred -----------hHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 33456777888888888877 4444443 788888888888886666678888888888888888863
Q ss_pred --ccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchh
Q 036642 621 --TIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRC 697 (938)
Q Consensus 621 --~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 697 (938)
..+ .+..+ +|+.|++++|++.+ +|..+ .++|++|++++|++++..+..+..+++|+.|++++|++++..|..
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCc-cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 444 66666 88888888888876 66654 378999999999999888888999999999999999998877767
Q ss_pred hhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccC
Q 036642 698 IHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKA 777 (938)
Q Consensus 698 l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~ 777 (938)
+..+++| +.|++++|+++ .+|..++.+++
T Consensus 237 ~~~l~~L--------------------------------------------------~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 237 LSFLPTL--------------------------------------------------RELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp GGGCTTC--------------------------------------------------CEEECCSSCCC-BCCTTGGGCTT
T ss_pred hhCCCCC--------------------------------------------------CEEECCCCcCe-ecChhhhcCcc
Confidence 7666555 78899999998 79999999999
Q ss_pred CCEEeCcCccCcccCCcccccc------CCCCEEECCCCccc--ccCCccccCCCCCCeEeCcCCc
Q 036642 778 LQSFNLSNNFFTGRIPESIGAM------RSLESIDFSLNQLS--GEIPQSMSSLTYLNHLNLSNNN 835 (938)
Q Consensus 778 L~~L~Ls~N~l~~~ip~~~~~l------~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~ 835 (938)
|+.|++++|.+++..+..|... .+|+.|++++|++. +..|..+..++.|+.+++++|+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9999999999998777777653 67899999999988 6778889999999999999884
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.4e-28 Score=269.25 Aligned_cols=276 Identities=20% Similarity=0.166 Sum_probs=144.5
Q ss_pred cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccC
Q 036642 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP 187 (938)
Q Consensus 108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~ 187 (938)
.+|..+. +++++|++++|.++++ .+..++++++|++|++++|.+++..|..|+++++|++|++++|++.......+
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~- 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP- 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-
T ss_pred ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-
Confidence 4444443 4666666666666643 33356666666666666666666666666666666666666666654433222
Q ss_pred CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCC--CCcccccCCCCCCEEECCCCCCCCccCcccccCCC
Q 036642 188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH--LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLI 265 (938)
Q Consensus 188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 265 (938)
++|++|++++|.++.... ..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.+.. +|..+. +
T Consensus 121 --~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~--~ 192 (330)
T 1xku_A 121 --KTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGLP--P 192 (330)
T ss_dssp --TTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSCC--T
T ss_pred --ccccEEECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCcccc--c
Confidence 455555555555554422 344555555555555555542 334445555555555555555543 122221 4
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecC
Q 036642 266 QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345 (938)
Q Consensus 266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 345 (938)
+|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|+++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 5555555555555444445555555555555555555444444555555555555555544 333344444444444444
Q ss_pred CCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccC------CCCCccEEEccCCeecc--cccccccCCCCCc
Q 036642 346 CVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLG------QFKNLYYLDLSNNSIVG--PIPFSLGHLSTLQ 417 (938)
Q Consensus 346 ~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~------~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~ 417 (938)
+|.+++ ..+..+. ..+.++.+++++|.+.. ..|..|..+++++
T Consensus 272 ~N~i~~-----------------------------~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~ 322 (330)
T 1xku_A 272 NNNISA-----------------------------IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322 (330)
T ss_dssp SSCCCC-----------------------------CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred CCcCCc-----------------------------cChhhcCCcccccccccccceEeecCcccccccCcccccccccee
Confidence 444443 3332222 23566667777776642 4455666667777
Q ss_pred EEEccCcc
Q 036642 418 FIDLSYNE 425 (938)
Q Consensus 418 ~L~Ls~n~ 425 (938)
.+++++|+
T Consensus 323 ~l~L~~N~ 330 (330)
T 1xku_A 323 AVQLGNYK 330 (330)
T ss_dssp GEEC----
T ss_pred EEEecccC
Confidence 77776663
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5.4e-28 Score=264.66 Aligned_cols=291 Identities=19% Similarity=0.160 Sum_probs=235.5
Q ss_pred CCccccceeeCCCC---------CcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcc
Q 036642 64 DCCAWAGVVCDNVT---------GHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQI 134 (938)
Q Consensus 64 ~~c~w~gv~c~~~~---------~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~ 134 (938)
..|.|+.+.|.... ..++.+++++. .+.+..+..|.++++|++|+|++|.++++ .
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n---------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~ 92 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN---------------KITEIKDGDFKNLKNLHTLILINNKISKI-S 92 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSS---------------CCCCBCTTTTTTCTTCCEEECCSSCCCCB-C
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCC---------------cCCEeChhhhccCCCCCEEECCCCcCCee-C
Confidence 35789999997422 25677888773 55555556899999999999999999975 6
Q ss_pred cccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCC
Q 036642 135 PRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNT 214 (938)
Q Consensus 135 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 214 (938)
|..++++++|++|++++|+++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+......+..+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 889999999999999999998 5666655 7999999999999988888899999999999999999765444567889
Q ss_pred CCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEE
Q 036642 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL 294 (938)
Q Consensus 215 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 294 (938)
+++|++|++++|.++.++...+ ++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred CCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 9999999999999998876443 89999999999998755 7889999999999999999998888889999999999
Q ss_pred ECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEcc
Q 036642 295 LLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLR 374 (938)
Q Consensus 295 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~ 374 (938)
++++|.++ .+|.++..+++|++|++++|++++..+..|...... .....++.++++
T Consensus 246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~-----------------------~~~~~l~~l~l~ 301 (330)
T 1xku_A 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN-----------------------TKKASYSGVSLF 301 (330)
T ss_dssp ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC-----------------------TTSCCCSEEECC
T ss_pred ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc-----------------------cccccccceEee
Confidence 99999998 688899999999999999999998777666433100 000145555555
Q ss_pred CCcCcc--ccccccCCCCCccEEEccCCe
Q 036642 375 GSSVSG--HLTYKLGQFKNLYYLDLSNNS 401 (938)
Q Consensus 375 ~n~l~~--~~~~~l~~l~~L~~L~Ls~n~ 401 (938)
+|.+.. ..|..+..+.+++.+++++|+
T Consensus 302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCcccccccCccccccccceeEEEecccC
Confidence 555542 345567788888888888874
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=9.1e-30 Score=302.90 Aligned_cols=439 Identities=13% Similarity=0.013 Sum_probs=213.4
Q ss_pred cCCccCCCCCCEEeCCCCCCC---CCccccc------------ccCCCCCcEEecCCCcCCCCCCcCCCCC--CcccEEE
Q 036642 110 NPSLLDLKHLSYLDLSYNDFQ---GVQIPRF------------ICSMGNLRYLNLSYTQFVGMIPPQLGNL--SNLQYLD 172 (938)
Q Consensus 110 ~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~------------l~~l~~L~~L~Ls~n~l~~~~p~~~~~L--~~L~~L~ 172 (938)
+..+.++++|++|+|+++... + .+|.. ...+++|++|+|++|.+++..+..+... .+|++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 344566777888888764321 1 01211 1145666666666665554444334332 2355555
Q ss_pred CCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc----ccccCCCCCCEEECC
Q 036642 173 LSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP----LAIANFSTLTTLDLL 248 (938)
Q Consensus 173 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~L~ 248 (938)
+++|.- .....+......+++|++|++++|.+++... ..+..+++|++|+++
T Consensus 145 L~~~~~------------------------~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 200 (592)
T 3ogk_B 145 LDKCSG------------------------FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY 200 (592)
T ss_dssp EESCEE------------------------EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECT
T ss_pred CcCCCC------------------------cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEee
Confidence 555431 0111122222344555555555554443321 123344555555555
Q ss_pred CCCCCCc---cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCC---CccchhhhcCCCCCEEEccC
Q 036642 249 YNQFDNS---FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN---SSIPNWLYRFNRLESLGVSN 322 (938)
Q Consensus 249 ~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~ 322 (938)
+|.+++. .++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+... +..+..+..+++|+.|++++
T Consensus 201 ~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (592)
T 3ogk_B 201 MTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279 (592)
T ss_dssp TCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT
T ss_pred ccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc
Confidence 5554311 112333445555555555555543 4445555555555555532211 12223344455555555555
Q ss_pred CcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCee
Q 036642 323 NSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSI 402 (938)
Q Consensus 323 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 402 (938)
+. .+.++..+..+++|++|++++|.+.+.... ..+..+++|++|+++++..
T Consensus 280 ~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~----------------------------~~~~~~~~L~~L~L~~~~~ 330 (592)
T 3ogk_B 280 MG-PNEMPILFPFAAQIRKLDLLYALLETEDHC----------------------------TLIQKCPNLEVLETRNVIG 330 (592)
T ss_dssp CC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHH----------------------------HHHTTCTTCCEEEEEGGGH
T ss_pred cc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHH----------------------------HHHHhCcCCCEEeccCccC
Confidence 32 223344444455555555555443322111 1234556666666663322
Q ss_pred cccccccccCCCCCcEEEccC-----------ccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCc
Q 036642 403 VGPIPFSLGHLSTLQFIDLSY-----------NELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471 (938)
Q Consensus 403 ~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n 471 (938)
.+.++.....+++|++|++++ +.+++. .++.....+++|++|+++.|
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----------------------GLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----------------------HHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH----------------------HHHHHHhhCccCeEEEeecC
Confidence 223333345566677777762 222210 01111233556666666666
Q ss_pred ccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhh
Q 036642 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFIC 551 (938)
Q Consensus 472 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~ 551 (938)
.+++..+..+...+++|+.|+++.+. ..|.+++... ...+.
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~-------------------~~n~l~~~p~--------------------~~~~~ 429 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLD-------------------REERITDLPL--------------------DNGVR 429 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECS-------------------CCSCCSSCCC--------------------HHHHH
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecC-------------------CCccccCchH--------------------HHHHH
Confidence 66555554444445555555554211 0111111000 00111
Q ss_pred hhhccCCCcceeeccCcc--CCCccchhhh-cCCCCCEEEcCCCcccc-cCCcccCCCCCCcEEEccccccccc-cc-cc
Q 036642 552 YRAHELKKLQFLYLRGNF--LQGELTDCWM-NYQNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKNNLSGT-IH-SL 625 (938)
Q Consensus 552 ~~l~~l~~L~~L~ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~-~~-~l 625 (938)
..+..+++|++|++++|. +++..+..+. .+++|++|++++|++++ .++..+..+++|++|+|++|.+++. ++ ..
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 223346667777775432 4544444443 36777777777777764 3344456677777777777776543 23 34
Q ss_pred ccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC
Q 036642 626 KNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN 664 (938)
Q Consensus 626 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n 664 (938)
..+++|++|++++|++++.-...+.+.++.+....+..+
T Consensus 510 ~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 567777777777777766544445555666666666554
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.2e-28 Score=268.15 Aligned_cols=276 Identities=20% Similarity=0.189 Sum_probs=197.1
Q ss_pred CceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcC
Q 036642 511 LEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLS 590 (938)
Q Consensus 511 L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 590 (938)
....+.+++.++.......++|++|++++|.+++..+ ..+..+++|++|++++|++++..|..+.++++|++|+++
T Consensus 33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEeeCCCCCcccccccccccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 3345555555554433344566666666666665332 234567777888888887777667777777788888888
Q ss_pred CCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcEEECCCCccCCCC-ChhHhhhcCcccEEeeCCCccc
Q 036642 591 NNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGENEFVENI-PTWIGERFSRMVVLILRSNKFH 667 (938)
Q Consensus 591 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~~l~~L~~L~L~~n~l~ 667 (938)
+|++++..+..++.+++|++|++++|++++..+ .+.++++|++|++++|+..+.+ |..+. .+++|++|++++|+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQ 187 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCC
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcC
Confidence 887775544457777788888888887776544 5677777778887777433334 33343 6777888888888887
Q ss_pred ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhh
Q 036642 668 SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEY 747 (938)
Q Consensus 668 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (938)
+..|..+..+++|+.|++++|.+. .+|..+.
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~------------------------------------------------ 218 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV------------------------------------------------ 218 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCST-THHHHHH------------------------------------------------
T ss_pred ccCHHHHhccccCCeecCCCCccc-cchhhhh------------------------------------------------
Confidence 777777777888888888887765 3332211
Q ss_pred hhhccceeEEEeecCccCccCchhcc---CccCCCEEeCcCccCcc----cCCccccccCCCCEEECCCCcccccCCcc-
Q 036642 748 KCILNLVRIIDFSKNNFSGKIPLEVT---NLKALQSFNLSNNFFTG----RIPESIGAMRSLESIDFSLNQLSGEIPQS- 819 (938)
Q Consensus 748 ~~~~~~l~~L~Ls~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~- 819 (938)
..++.|+.|++++|++++..+..+. ....++.++|++|.+++ .+|+.++.+++|++||+++|+++ .+|..
T Consensus 219 -~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~ 296 (353)
T 2z80_A 219 -DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296 (353)
T ss_dssp -HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred -hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence 1233458899999999976655543 46778889999999886 47888999999999999999999 56766
Q ss_pred ccCCCCCCeEeCcCCcccccCCC
Q 036642 820 MSSLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 820 l~~l~~L~~L~ls~N~l~g~ip~ 842 (938)
+.++++|++|++++|+++|.+|.
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCCHHH
T ss_pred HhcCCCCCEEEeeCCCccCcCCC
Confidence 58999999999999999999884
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.9e-28 Score=262.02 Aligned_cols=226 Identities=17% Similarity=0.213 Sum_probs=190.2
Q ss_pred CCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEE
Q 036642 557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLD 635 (938)
Q Consensus 557 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~ 635 (938)
.+.+++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|++|.++ .+| .+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888888 67777888888888888888888 78888888888888888888888 445 888888888888
Q ss_pred CCCCccCCCCChhHh--------hhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhc
Q 036642 636 VGENEFVENIPTWIG--------ERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707 (938)
Q Consensus 636 Ls~N~l~~~~p~~~~--------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 707 (938)
+++|++.+.+|..+. ..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|+.+..+++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L--- 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL--- 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence 888888888887664 13888899999998888 678888888899999999998884 66566665554
Q ss_pred cccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCcc
Q 036642 708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNF 787 (938)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 787 (938)
+.|++++|++.+.+|..++.+++|+.|+|++|.
T Consensus 232 -----------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 232 -----------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp -----------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred -----------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 688899999988999999999999999999999
Q ss_pred CcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCccc
Q 036642 788 FTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837 (938)
Q Consensus 788 l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 837 (938)
+.+.+|..++++++|+.|||++|++.+.+|.++.++++|+.+++..|.+.
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999998877655
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.7e-29 Score=298.86 Aligned_cols=81 Identities=17% Similarity=0.077 Sum_probs=54.1
Q ss_pred ceeEEEeecCccCc-cCchhccCccCCCEEeCcCccCccc-CCccccccCCCCEEECCCCcccccCCccc-cCCCCCCeE
Q 036642 753 LVRIIDFSKNNFSG-KIPLEVTNLKALQSFNLSNNFFTGR-IPESIGAMRSLESIDFSLNQLSGEIPQSM-SSLTYLNHL 829 (938)
Q Consensus 753 ~l~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L 829 (938)
.|+.|++++|++++ .++..+..+++|+.|+|++|.+++. ++..+..+++|++|+|++|+++..-...+ ..++.+...
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence 35778888888876 3455567788888888888888755 34445677888888888888876533333 245555544
Q ss_pred eCcC
Q 036642 830 NLSN 833 (938)
Q Consensus 830 ~ls~ 833 (938)
.+..
T Consensus 544 ~~~~ 547 (592)
T 3ogk_B 544 LIPS 547 (592)
T ss_dssp EECC
T ss_pred EecC
Confidence 4443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.2e-27 Score=256.86 Aligned_cols=235 Identities=21% Similarity=0.225 Sum_probs=183.5
Q ss_pred CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccc--cCCcccCCCCCCcEEEcccccccccccccccCcCCcEEE
Q 036642 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTG--NLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLD 635 (938)
Q Consensus 558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~ 635 (938)
++|++|++++|+++...+..+.++++|++|++++|.++. ..|..+..+++|++|++++|.+++.++.+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 456677777777764444456777777777777777763 235555667777777777777775444677777888888
Q ss_pred CCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccccc-ccchhhhcchhhhhccccccch
Q 036642 636 VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG-EVPRCIHNLRAMVTLNSHAGKA 714 (938)
Q Consensus 636 Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~l~~~~~~~ 714 (938)
+++|++.+..+...+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++ .+|..+..+++|
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------- 177 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------- 177 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC----------
Confidence 888877664442223367888888888888888888888888999999999998886 567666666554
Q ss_pred hhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCc
Q 036642 715 IQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPE 794 (938)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 794 (938)
+.|++++|++++..|..++.+++|+.|+|++|.+++..+.
T Consensus 178 ----------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 178 ----------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ----------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ----------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 7888999999988888899999999999999999987777
Q ss_pred cccccCCCCEEECCCCcccccCCccccCC-CCCCeEeCcCCcccccCCC
Q 036642 795 SIGAMRSLESIDFSLNQLSGEIPQSMSSL-TYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 795 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip~ 842 (938)
.++.+++|+.||+++|++++..|..+..+ ++|++|++++|+++|.++.
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 88999999999999999999999999988 4899999999999987654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.7e-27 Score=257.77 Aligned_cols=274 Identities=20% Similarity=0.246 Sum_probs=218.8
Q ss_pred eeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCc--cchhhhcCCCCCEEEcC
Q 036642 513 VLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE--LTDCWMNYQNLMILDLS 590 (938)
Q Consensus 513 ~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~Ls 590 (938)
.++.+++.++......++++++|++++|.++...+ ..+..+++|++|++++|+++.. .+..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCH----hHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 44455555444333344567777777777664222 2346688899999999988733 36777788999999999
Q ss_pred CCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccc
Q 036642 591 NNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS 668 (938)
Q Consensus 591 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 668 (938)
+|.++ .+|..+..+++|++|++++|++++..+ .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccc
Confidence 99988 467778889999999999999987665 788899999999999999887777665 78999999999999987
Q ss_pred -cCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhh
Q 036642 669 -LLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEY 747 (938)
Q Consensus 669 -~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (938)
.+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------------- 201 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------------------------------- 201 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------------------------------
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-------------------------------------------
Confidence 688899999999999999999998878887776665
Q ss_pred hhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccccc-CCCCEEECCCCcccccCC--ccccCCC
Q 036642 748 KCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM-RSLESIDFSLNQLSGEIP--QSMSSLT 824 (938)
Q Consensus 748 ~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l-~~L~~LdLs~N~l~~~ip--~~l~~l~ 824 (938)
+.|++++|++++..+..+..+++|+.|+|++|.+++..|..+..+ ++|+.|||++|++++..+ .....+.
T Consensus 202 -------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 202 -------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp -------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred -------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 789999999998777789999999999999999999999999998 599999999999987532 1222334
Q ss_pred CCCeEeCcCCcccccCCC
Q 036642 825 YLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 825 ~L~~L~ls~N~l~g~ip~ 842 (938)
..+.+.+..+++.|..|.
T Consensus 275 ~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 275 DQRQLLVEVERMECATPS 292 (306)
T ss_dssp HTGGGBSCGGGCBEEESG
T ss_pred hhhhhhccccccccCCch
Confidence 455667778888888775
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.9e-26 Score=262.19 Aligned_cols=236 Identities=22% Similarity=0.208 Sum_probs=207.8
Q ss_pred cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccC
Q 036642 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP 187 (938)
Q Consensus 108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~ 187 (938)
.+|..+. +++++|+|++|.++++ .|..+.++++|++|+|++|.+++..|..|.++++|++|+|++|++.......|.
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred ccCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 4565554 5899999999999975 677899999999999999999988889999999999999999999998888899
Q ss_pred CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCC-CCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642 188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR-CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ 266 (938)
Q Consensus 188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 266 (938)
++++|++|++++|.++.++. ..+..+++|++|++++ +.+..+++..|.++++|++|++++|.+++ ...+..+++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~~ 219 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPS--YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---MPNLTPLVG 219 (452)
T ss_dssp SCTTCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---CCCCTTCTT
T ss_pred ccCCCCEEECCCCCcceeCH--hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---ccccccccc
Confidence 99999999999999987653 5688899999999998 56777777789999999999999999986 345788899
Q ss_pred CCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCC
Q 036642 267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC 346 (938)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 346 (938)
|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 99999999999988888899999999999999999988888899999999999999999988888888889999999988
Q ss_pred CcCcc
Q 036642 347 VKLSQ 351 (938)
Q Consensus 347 n~l~~ 351 (938)
|.+..
T Consensus 300 Np~~C 304 (452)
T 3zyi_A 300 NPWNC 304 (452)
T ss_dssp SCEEC
T ss_pred CCcCC
Confidence 87654
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=254.76 Aligned_cols=284 Identities=21% Similarity=0.209 Sum_probs=200.3
Q ss_pred cCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642 114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK 193 (938)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 193 (938)
..++...+.|.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34455566888899888 4677554 5899999999999877777899999999999999998888888888888888
Q ss_pred EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc-ccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642 194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP-LAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL 272 (938)
Q Consensus 194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 272 (938)
+|++++|.++.++. ..+..+++|++|++++|+++.++. ..+.++++|++|++++|...+.+.+..+.++++|++|++
T Consensus 104 ~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 104 HLDLSYNYLSNLSS--SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp EEECCSSCCSSCCH--HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred EEECCCCcCCcCCH--hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 88888888887643 457778888888888888887776 677788888888888874323333566777777777777
Q ss_pred cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhh---ccCCCCeeecCCCcC
Q 036642 273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA---SLCNLRSVMLSCVKL 349 (938)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l 349 (938)
++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+. ..+.++.++++.+.+
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 77777777777777777777777777777543333444577777777777777654433222 233344444444444
Q ss_pred ccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeeccccccc-ccCCCCCcEEEccCccCCC
Q 036642 350 SQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFS-LGHLSTLQFIDLSYNELNG 428 (938)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~ 428 (938)
.+..-. .+|..+..+++|++|++++|+++. +|.. +..+++|++|++++|++.+
T Consensus 262 ~~~~l~-------------------------~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 262 TDESLF-------------------------QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CHHHHH-------------------------HHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCcchh-------------------------hhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccC
Confidence 332111 234456677788888888888774 4443 5778888888888887765
Q ss_pred C
Q 036642 429 M 429 (938)
Q Consensus 429 ~ 429 (938)
.
T Consensus 316 ~ 316 (353)
T 2z80_A 316 S 316 (353)
T ss_dssp C
T ss_pred c
Confidence 3
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.9e-27 Score=249.22 Aligned_cols=229 Identities=20% Similarity=0.154 Sum_probs=158.9
Q ss_pred ceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCC
Q 036642 561 QFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGEN 639 (938)
Q Consensus 561 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N 639 (938)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+ .+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45566666655 334322 3566777777777766666666667777777777777766655 6667777777777777
Q ss_pred c-cCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhh
Q 036642 640 E-FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQ 718 (938)
Q Consensus 640 ~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~ 718 (938)
+ +.+..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|
T Consensus 91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 155 (285)
T 1ozn_A 91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------- 155 (285)
T ss_dssp TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence 6 4333344443 57777777777777777667777777777777777777775555555555544
Q ss_pred hhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccc
Q 036642 719 FLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGA 798 (938)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 798 (938)
+.|++++|++++..+..+..+++|+.|++++|.+++..|..|++
T Consensus 156 ------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 156 ------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp ------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred ------------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence 66777777777555556777888888888888888777888888
Q ss_pred cCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCC
Q 036642 799 MRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS 843 (938)
Q Consensus 799 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 843 (938)
+++|+.||+++|++++..|..+..+++|++|++++|++.|.++..
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 888888888888888766666778888888888888888776643
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8e-26 Score=258.60 Aligned_cols=230 Identities=21% Similarity=0.239 Sum_probs=143.9
Q ss_pred CcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECC
Q 036642 559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVG 637 (938)
Q Consensus 559 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls 637 (938)
++++|++++|++++..+..|.++++|++|++++|++++..|..|.++++|++|+|++|++++.++ .+.++++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 34444555555544444455555555555555555555444555555555555555555554444 45555555555555
Q ss_pred CCccCCCCChhHhhhcCcccEEeeCCC-cccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhh
Q 036642 638 ENEFVENIPTWIGERFSRMVVLILRSN-KFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQ 716 (938)
Q Consensus 638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~ 716 (938)
+|++.+ +|...+..+++|+.|++++| .+....+..|..+++|+.|++++|++++ +| .+..++
T Consensus 156 ~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~-------------- 218 (452)
T 3zyi_A 156 NNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLV-------------- 218 (452)
T ss_dssp SCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCT--------------
T ss_pred CCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccc--------------
Confidence 555543 22222224555555555553 3333333356667777777777777663 23 122222
Q ss_pred hhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccc
Q 036642 717 YQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI 796 (938)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 796 (938)
.|+.|+|++|++++..|..+.++++|+.|+|++|++++..|..|
T Consensus 219 ------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 219 ------------------------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp ------------------------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ------------------------------------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence 23677888888887778888888888888888888888888888
Q ss_pred cccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCC
Q 036642 797 GAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIP 841 (938)
Q Consensus 797 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 841 (938)
..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus 263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 888888888888888887777777888888888888888887765
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.5e-26 Score=258.36 Aligned_cols=250 Identities=20% Similarity=0.208 Sum_probs=153.0
Q ss_pred CceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcC
Q 036642 511 LEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLS 590 (938)
Q Consensus 511 L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 590 (938)
...++.+++.++.......++++.|++++|++++..+ ..+..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4455666655554433334455555555555544322 223344455555555555544444444445555555555
Q ss_pred CCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC-cccc
Q 036642 591 NNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN-KFHS 668 (938)
Q Consensus 591 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~ 668 (938)
+|++++..+..|..+++|++|+|++|++++..+ .+.+ +++|++|++++| .+..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-------------------------l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-------------------------IPSLRRLDLGELKRLSY 175 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT-------------------------CTTCCEEECCCCTTCCE
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhh-------------------------CcccCEeCCCCCCCcce
Confidence 555444333344444445555544444444333 3444 555555555553 2222
Q ss_pred cCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhh
Q 036642 669 LLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYK 748 (938)
Q Consensus 669 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (938)
..+..|..+++|+.|++++|.++ .+|. +..++
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~---------------------------------------------- 207 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI---------------------------------------------- 207 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCS----------------------------------------------
T ss_pred eCcchhhcccccCeecCCCCcCc-cccc-cCCCc----------------------------------------------
Confidence 23335666677777777777666 3332 22222
Q ss_pred hhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCe
Q 036642 749 CILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNH 828 (938)
Q Consensus 749 ~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~ 828 (938)
.|+.|||++|++++..|..+.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.
T Consensus 208 ----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 208 ----KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp ----SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred ----ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 2367888888888777888888888888888888888888888888888888888888888877777888888888
Q ss_pred EeCcCCcccccCC
Q 036642 829 LNLSNNNLTGKIP 841 (938)
Q Consensus 829 L~ls~N~l~g~ip 841 (938)
|++++|++.|.+.
T Consensus 284 L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 284 IHLHHNPWNCNCD 296 (440)
T ss_dssp EECCSSCEECSST
T ss_pred EEcCCCCccCCCC
Confidence 8999888888765
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=255.11 Aligned_cols=245 Identities=21% Similarity=0.170 Sum_probs=184.9
Q ss_pred CccEEecccccccccCCCccccccCceeecCCccCccCCCCC---CCCCcEEEccCCccccccchhhhhhhccCCCccee
Q 036642 487 QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFL 563 (938)
Q Consensus 487 ~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L 563 (938)
....++.+++.++..+..+. +.++.|++++|++.+..+.. +++|++|++++|.+++..+ ..+..+++|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~~~l~~L~~L 117 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI----GAFNGLANLNTL 117 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG----GGGTTCSSCCEE
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh----hhccCCccCCEE
Confidence 35678888888886555554 57999999999999877654 5789999999999987554 456779999999
Q ss_pred eccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcEEECCCCcc
Q 036642 564 YLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGENEF 641 (938)
Q Consensus 564 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~N~l 641 (938)
++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|+..+.++ .+.++++|++|++++|++
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 999999998777889999999999999999998888899999999999999966544444 677778888888887776
Q ss_pred CCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhh
Q 036642 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLL 721 (938)
Q Consensus 642 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~ 721 (938)
.. +|. +..+++|+.|++++|++++..|..|..+++|
T Consensus 198 ~~-~~~--------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------- 233 (440)
T 3zyj_A 198 RE-IPN--------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHL----------------- 233 (440)
T ss_dssp SS-CCC--------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTC-----------------
T ss_pred cc-ccc--------------------------cCCCcccCEEECCCCccCccChhhhccCccC-----------------
Confidence 53 332 3345555555555555555555555544443
Q ss_pred ccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCC
Q 036642 722 YASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRS 801 (938)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~ 801 (938)
+.|+|++|++++..|..+.++++|+.|+|++|++++..++.|..+++
T Consensus 234 ---------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 234 ---------------------------------QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp ---------------------------------CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred ---------------------------------CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 45566666666666666677777777777777777666666777777
Q ss_pred CCEEECCCCcccc
Q 036642 802 LESIDFSLNQLSG 814 (938)
Q Consensus 802 L~~LdLs~N~l~~ 814 (938)
|+.|+|++|++.+
T Consensus 281 L~~L~L~~Np~~C 293 (440)
T 3zyj_A 281 LERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECCSSCEEC
T ss_pred CCEEEcCCCCccC
Confidence 7777777777664
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.5e-27 Score=256.74 Aligned_cols=227 Identities=20% Similarity=0.223 Sum_probs=151.1
Q ss_pred cceeeccCccC-CCccchhhh-------cCCCCCEEEcCCCcccccCCccc--CCCCCCcEEEcccccccccccccccC-
Q 036642 560 LQFLYLRGNFL-QGELTDCWM-------NYQNLMILDLSNNKFTGNLPISL--GSLISLQSLHLRKNNLSGTIHSLKNC- 628 (938)
Q Consensus 560 L~~L~ls~n~l-~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~l~~l- 628 (938)
|++|++++|++ ...+|..+. ++++|++|++++|++++.+|..+ ..+++|++|+|++|++++.+..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 55555665555 233444443 45666666666666666666554 56666666666666666552244444
Q ss_pred ----cCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCccccc--CCccc--cCCCccCeeeccccccccccchhhhc
Q 036642 629 ----TALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSL--LPKGL--CDLAFLQIVDLADNNLSGEVPRCIHN 700 (938)
Q Consensus 629 ----~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~ 700 (938)
++|++|++++|++.+..|..+. .+++|++|++++|++.+. .|..+ ..+++|+.|++++|++++ +|....
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~- 221 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCS- 221 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHH-
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHH-
Confidence 5666666666666554444444 566666666666665543 23333 667778888888887762 111000
Q ss_pred chhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCc-hhccCccCCC
Q 036642 701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP-LEVTNLKALQ 779 (938)
Q Consensus 701 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip-~~l~~l~~L~ 779 (938)
.....++.|+.||+++|++++.+| ..+..+++|+
T Consensus 222 ---------------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 222 ---------------------------------------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp ---------------------------------------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred ---------------------------------------------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 001123345889999999998776 4567789999
Q ss_pred EEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCccccc
Q 036642 780 SFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK 839 (938)
Q Consensus 780 ~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 839 (938)
.|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++.
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 9999999999 8888877 8999999999999976 76 88999999999999999863
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.4e-25 Score=238.07 Aligned_cols=213 Identities=23% Similarity=0.181 Sum_probs=118.6
Q ss_pred ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCc-ccccCccc
Q 036642 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF-LYVENLWW 185 (938)
Q Consensus 107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~-i~~~~~~~ 185 (938)
..+|..+ .++|++|++++|.++++ .+..+.++++|++|++++|.+++..|..|+++++|++|++++|. +....+..
T Consensus 24 ~~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 24 QAVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp SSCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred ccCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 3455443 34777777777777753 34556777777777777777776667777777777777777775 66555556
Q ss_pred cCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCC
Q 036642 186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLI 265 (938)
Q Consensus 186 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 265 (938)
|..+++|++|++++|.++.... ..+..+++|++|++++|+++++++..+.++++|++|++++|.+++.. +..+..++
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~ 177 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLH 177 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCT
T ss_pred hcCCcCCCEEECCCCcCCEECH--hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCcc
Confidence 6666666666666665554422 33445555555555555555555545555555555555555554321 23344444
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcC
Q 036642 266 QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325 (938)
Q Consensus 266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 325 (938)
+|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 444444444444444444444444444444444444443333444444444444444443
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.9e-27 Score=283.07 Aligned_cols=110 Identities=13% Similarity=0.138 Sum_probs=67.5
Q ss_pred ccCCCcceeeccCccCCCccchhhhc-CCCCCEEEcCCCcccccCCccc-CCCCCCcEEEccccccccccc--ccccCcC
Q 036642 555 HELKKLQFLYLRGNFLQGELTDCWMN-YQNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNLSGTIH--SLKNCTA 630 (938)
Q Consensus 555 ~~l~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~--~l~~l~~ 630 (938)
..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++... ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 4466777777765 555444444444 6777777777777765444333 456777777777777754332 3445777
Q ss_pred CcEEECCCCccCCCCChhHhhhcCcccEEeeCCCc
Q 036642 631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNK 665 (938)
Q Consensus 631 L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~ 665 (938)
|+.|++++|+++......+...+++|+...+..+.
T Consensus 508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 77777777776443333444456777666666554
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-25 Score=255.46 Aligned_cols=220 Identities=20% Similarity=0.164 Sum_probs=189.9
Q ss_pred ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEE
Q 036642 555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTL 634 (938)
Q Consensus 555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L 634 (938)
..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..| ++.+++|++|+|++|.+++.++ .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 345689999999999999888999999999999999999997766 8899999999999999987543 3899999
Q ss_pred ECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhh-cchhhhhccccccc
Q 036642 635 DVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH-NLRAMVTLNSHAGK 713 (938)
Q Consensus 635 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~l~~~~~~ 713 (938)
++++|.+.+..+. .+++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+. .+++|
T Consensus 105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L--------- 171 (487)
T 3oja_A 105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--------- 171 (487)
T ss_dssp ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---------
T ss_pred ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc---------
Confidence 9999999875543 478999999999999999999999999999999999999988887765 45544
Q ss_pred hhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCC
Q 036642 714 AIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP 793 (938)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip 793 (938)
+.|+|++|.+++. |. ...+++|+.|+|++|.+++. |
T Consensus 172 -----------------------------------------~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~ 207 (487)
T 3oja_A 172 -----------------------------------------EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-G 207 (487)
T ss_dssp -----------------------------------------CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-C
T ss_pred -----------------------------------------cEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-C
Confidence 7889999999865 33 44689999999999999964 4
Q ss_pred ccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642 794 ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG 838 (938)
Q Consensus 794 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 838 (938)
..++.+++|+.|||++|++++ +|..+..+++|+.|++++|++.|
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 458999999999999999996 78889999999999999999983
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.8e-25 Score=258.05 Aligned_cols=288 Identities=23% Similarity=0.196 Sum_probs=186.2
Q ss_pred CCCCCCCCCCCccccceeeC------CCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCC
Q 036642 55 RLASWIGYEDCCAWAGVVCD------NVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYND 128 (938)
Q Consensus 55 ~l~~W~~~~~~c~w~gv~c~------~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~ 128 (938)
..++|....+||.|+|..|. .....++.+++++. .+. .+|..+. ++|++|+|++|.
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n---------------~L~-~lp~~l~--~~L~~L~L~~N~ 72 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES---------------GLT-TLPDCLP--AHITTLVIPDNN 72 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS---------------CCS-CCCSCCC--TTCSEEEECSCC
T ss_pred HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCC---------------CcC-ccChhhC--CCCcEEEecCCC
Confidence 34567554789999774321 11234778888773 333 7777665 788999999998
Q ss_pred CCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcch
Q 036642 129 FQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDW 208 (938)
Q Consensus 129 l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 208 (938)
++. +|. .+++|++|+|++|++++ +|. .+++|++|++++|.+..... .+++|+.|++++|+++.++.
T Consensus 73 l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~- 138 (622)
T 3g06_A 73 LTS--LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV- 138 (622)
T ss_dssp CSC--CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC-
T ss_pred CCC--CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC-
Confidence 883 565 57888999999998884 554 67888888888888876544 56778888888888877654
Q ss_pred hhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCC
Q 036642 209 LRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNL 288 (938)
Q Consensus 209 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 288 (938)
.+++|++|++++|++++++. .+++|+.|++++|.+++ +| ..+++|++|++++|.+++ +|.. +
T Consensus 139 -----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~l~~-l~~~---~ 200 (622)
T 3g06_A 139 -----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQLAS-LPTL---P 200 (622)
T ss_dssp -----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred -----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCCCCC-CCCc---c
Confidence 24778888888888877653 34677888888887775 24 446778888888887774 4432 3
Q ss_pred CCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCc
Q 036642 289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGL 368 (938)
Q Consensus 289 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L 368 (938)
++|+.|++++|.++. +|. .+++|++|++++|.+++. | ..+++|+.|++++|.++.. |. ..++|
T Consensus 201 ~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~l-p~--------~~~~L 263 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTSL-PM--------LPSGL 263 (622)
T ss_dssp TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC--------CCTTC
T ss_pred chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCcC-Cc--------ccccC
Confidence 677777777777763 343 246677777777777652 2 3445566666666655532 11 11245
Q ss_pred cEEEccCCcCccccccccCCCCCccEEEccCCeecccccccc
Q 036642 369 EILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL 410 (938)
Q Consensus 369 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 410 (938)
+.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+
T Consensus 264 ~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 55555555554 334444555555555555555554444433
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.7e-26 Score=248.53 Aligned_cols=247 Identities=19% Similarity=0.273 Sum_probs=205.6
Q ss_pred ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCccc-ccCCcccC-------CCCCCcEEEccccccccccc-cc
Q 036642 555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFT-GNLPISLG-------SLISLQSLHLRKNNLSGTIH-SL 625 (938)
Q Consensus 555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~-~l 625 (938)
+..++|++|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|+|++|++++.+| .+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3467899999999999 678777655 999999999994 56776665 79999999999999998887 55
Q ss_pred --ccCcCCcEEECCCCccCCCCChhHhhhc-----CcccEEeeCCCcccccCCccccCCCccCeeecccccccccc--ch
Q 036642 626 --KNCTALLTLDVGENEFVENIPTWIGERF-----SRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEV--PR 696 (938)
Q Consensus 626 --~~l~~L~~L~Ls~N~l~~~~p~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~ 696 (938)
..+++|++|++++|++.+. |..+. .+ ++|++|++++|++++..|..+..+++|+.|++++|++.+.+ |.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 8999999999999999987 87776 56 89999999999999999899999999999999999988753 32
Q ss_pred hh--hcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCc--cCch-h
Q 036642 697 CI--HNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSG--KIPL-E 771 (938)
Q Consensus 697 ~l--~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g--~ip~-~ 771 (938)
.+ ..++ .|+.|++++|++++ .+|. .
T Consensus 194 ~~~~~~l~--------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 194 ALCPLKFP--------------------------------------------------TLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HSCTTSCT--------------------------------------------------TCCEEECTTSCCCCHHHHHHHH
T ss_pred HHHhccCC--------------------------------------------------CCCEEECCCCcCcchHHHHHHH
Confidence 32 3333 34899999999983 3343 3
Q ss_pred ccCccCCCEEeCcCccCcccCC-ccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcC
Q 036642 772 VTNLKALQSFNLSNNFFTGRIP-ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFD 850 (938)
Q Consensus 772 l~~l~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~ 850 (938)
+.++++|+.|+|++|++++.+| ..+..+++|++|||++|+++ .+|..+. ++|++|++++|++++. |....+..+.
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~ 299 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVG 299 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCC
Confidence 4688999999999999998886 56777899999999999999 7898887 8999999999999976 7666666666
Q ss_pred CCCcCCCCCCC
Q 036642 851 ASSYAGNDLCG 861 (938)
Q Consensus 851 ~~~~~~n~lc~ 861 (938)
...+.+|.+.+
T Consensus 300 ~L~L~~N~l~~ 310 (312)
T 1wwl_A 300 NLSLKGNPFLD 310 (312)
T ss_dssp EEECTTCTTTC
T ss_pred EEeccCCCCCC
Confidence 66677775543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-25 Score=240.71 Aligned_cols=219 Identities=20% Similarity=0.176 Sum_probs=147.7
Q ss_pred ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEE
Q 036642 555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTL 634 (938)
Q Consensus 555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L 634 (938)
..+++|++|++++|++++..|..+..+++|++|++++|.+++..| +..+++|++|++++|++++.. ..++|++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL 104 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence 446678888888888887777777888888888888888876544 777888888888888777533 33678888
Q ss_pred ECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhh-cchhhhhccccccc
Q 036642 635 DVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH-NLRAMVTLNSHAGK 713 (938)
Q Consensus 635 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~l~~~~~~ 713 (938)
++++|++.+..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..+. .+++|
T Consensus 105 ~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L--------- 171 (317)
T 3o53_A 105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--------- 171 (317)
T ss_dssp ECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---------
T ss_pred ECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC---------
Confidence 8888877664332 367788888888888877777777788888888888888766665542 34444
Q ss_pred hhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCC
Q 036642 714 AIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP 793 (938)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip 793 (938)
+.|++++|++++. |. ...+++|+.|+|++|++++ +|
T Consensus 172 -----------------------------------------~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 172 -----------------------------------------EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp -----------------------------------------CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-EC
T ss_pred -----------------------------------------CEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-ch
Confidence 5566666666532 32 2235666666666666663 33
Q ss_pred ccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCccc
Q 036642 794 ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837 (938)
Q Consensus 794 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 837 (938)
..+..+++|+.|||++|+++ .+|..+..+++|++|++++|+++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 34666666666666666666 35555666666666666666665
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=8.6e-24 Score=247.41 Aligned_cols=270 Identities=24% Similarity=0.253 Sum_probs=183.2
Q ss_pred CccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeeccc
Q 036642 367 GLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRH 446 (938)
Q Consensus 367 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~ 446 (938)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|+|++|++++++.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~--------------- 98 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV--------------- 98 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC---------------
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC---------------
Confidence 5778888888777 4454443 677788888887773 443 46777777777777776543
Q ss_pred ccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCC
Q 036642 447 CHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALP 526 (938)
Q Consensus 447 ~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p 526 (938)
.+++|++|++++|.+++ +|. .+++|+.|++++|++++..+. +++|++|++++|.+++ +|
T Consensus 99 ------------~l~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~ 157 (622)
T 3g06_A 99 ------------LPPGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LP 157 (622)
T ss_dssp ------------CCTTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC
T ss_pred ------------CCCCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cC
Confidence 33455555555555542 222 244555666666555543222 2556666666666654 34
Q ss_pred CCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCC
Q 036642 527 LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 606 (938)
Q Consensus 527 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 606 (938)
..+++|+.|++++|.+++ +| ..+++|+.|++++|++++ +|.. .++|+.|++++|.++ .+|.. ++
T Consensus 158 ~~~~~L~~L~L~~N~l~~-l~-------~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~ 221 (622)
T 3g06_A 158 ALPSELCKLWAYNNQLTS-LP-------MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PS 221 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CC-------CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CT
T ss_pred CccCCCCEEECCCCCCCC-Cc-------ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CC
Confidence 445667777777777765 22 235778888888888775 3432 467888888888887 44532 47
Q ss_pred CCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecc
Q 036642 607 SLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA 686 (938)
Q Consensus 607 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 686 (938)
+|+.|++++|++++. | ..+++|+.|++++|++++ +|. .+++|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~l-p--~~l~~L~~L~Ls~N~L~~-lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTSL-P--VLPSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSCC-C--CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCcC-C--CCCCcCcEEECCCCCCCc-CCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 788888888888763 3 455788888888888874 665 4678889999999888 568888889999999999
Q ss_pred ccccccccchhhhcchhh
Q 036642 687 DNNLSGEVPRCIHNLRAM 704 (938)
Q Consensus 687 ~N~l~~~~p~~l~~l~~L 704 (938)
+|++++.+|..+..++..
T Consensus 293 ~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 293 GNPLSERTLQALREITSA 310 (622)
T ss_dssp SCCCCHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHhcccc
Confidence 999998888887776643
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6.4e-26 Score=246.22 Aligned_cols=149 Identities=20% Similarity=0.137 Sum_probs=74.9
Q ss_pred CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccC-CCCCCcEEEcccccccccccccccCcCCcEEEC
Q 036642 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLG-SLISLQSLHLRKNNLSGTIHSLKNCTALLTLDV 636 (938)
Q Consensus 558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L 636 (938)
++|++|++++|++++..+..+..+++|++|++++|.+++..|..+. .+++|++|+|++|.+++. +....+++|++|++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~L 198 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDL 198 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEEC
Confidence 3344444444444444444444445555555555555444443332 345555555555555443 22223455555555
Q ss_pred CCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccc-cccchhhhcchhhhhcccc
Q 036642 637 GENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS-GEVPRCIHNLRAMVTLNSH 710 (938)
Q Consensus 637 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~~~ 710 (938)
++|++.+ +|..+. .+++|++|++++|++++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.+++.
T Consensus 199 s~N~l~~-l~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 199 SSNKLAF-MGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CSSCCCE-ECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcCCc-chhhhc-ccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 5555543 333333 45555555555555553 4455555666666666666665 5555556666555555544
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.3e-24 Score=224.84 Aligned_cols=217 Identities=24% Similarity=0.274 Sum_probs=131.2
Q ss_pred CCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCC
Q 036642 63 EDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMG 142 (938)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~ 142 (938)
.++|.|.|+.|.. .+.++.+++++. .+. .+|..+. +.+++|+|++|.++.+ .+..+.+++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~---------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~ 61 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK---------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLT 61 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS---------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCT
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC---------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCC
Confidence 5789999999964 234456666652 222 4555443 4677777777777643 334566677
Q ss_pred CCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEE
Q 036642 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR 222 (938)
Q Consensus 143 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 222 (938)
+|++|++++|.++...+..|.++++|++|++++|++....+..|..+++|++|++++
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------- 118 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR----------------------- 118 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS-----------------------
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC-----------------------
Confidence 777777777777655555556667777777766666655554455555555555554
Q ss_pred cCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCC
Q 036642 223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN 302 (938)
Q Consensus 223 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 302 (938)
|+++++++..|.++++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 119 ---n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 119 ---NQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp ---SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ---CccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 4455555555555555555555555555422 334555566666666666665555555666666666666666666
Q ss_pred CccchhhhcCCCCCEEEccCCcCC
Q 036642 303 SSIPNWLYRFNRLESLGVSNNSLQ 326 (938)
Q Consensus 303 ~~~p~~l~~l~~L~~L~L~~n~l~ 326 (938)
+..+..+..+++|++|++++|.+.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCHHHhccccCCCEEEecCCCee
Confidence 555555666677777777777654
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.5e-24 Score=228.93 Aligned_cols=211 Identities=21% Similarity=0.193 Sum_probs=147.1
Q ss_pred CCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEe
Q 036642 582 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLI 660 (938)
Q Consensus 582 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~ 660 (938)
++|++|++++|++++..+..+.++++|++|++++|++++..+ .+.++++|++|++++|++.+..+..+. .+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEE
Confidence 356666666666665555556666666666666666665555 566666666666666666554444443 566666666
Q ss_pred eCCCcccccCCccccCCCccCeeecccccccc-ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeee
Q 036642 661 LRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG-EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV 739 (938)
Q Consensus 661 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (938)
+++|++++..+..+..+++|+.|++++|.+++ .+|..+..+++|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L----------------------------------- 151 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL----------------------------------- 151 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------------------------
Confidence 66666666655567777777777777777765 346666655544
Q ss_pred ecCcchhhhhhccceeEEEeecCccCccCchhccCccCCC----EEeCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642 740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQ----SFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE 815 (938)
Q Consensus 740 ~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 815 (938)
+.|++++|++++..+..+..+++|+ .|++++|.+++..+..+.. .+|++|++++|++++.
T Consensus 152 ---------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 152 ---------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSV 215 (276)
T ss_dssp ---------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCC
T ss_pred ---------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeec
Confidence 5677777777766666676666666 7899999998666655544 4899999999999977
Q ss_pred CCccccCCCCCCeEeCcCCcccccCCCCC
Q 036642 816 IPQSMSSLTYLNHLNLSNNNLTGKIPSST 844 (938)
Q Consensus 816 ip~~l~~l~~L~~L~ls~N~l~g~ip~~~ 844 (938)
.+..+..+++|++|++++|+++|.+|...
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred CHhHhcccccccEEEccCCcccccCCchH
Confidence 77778899999999999999999988653
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.4e-25 Score=255.82 Aligned_cols=235 Identities=23% Similarity=0.201 Sum_probs=193.4
Q ss_pred CCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCc
Q 036642 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 609 (938)
Q Consensus 530 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 609 (938)
++|++|++++|.+++..| ..+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp GGCCEEECCSSCCCCCCG----GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred CCccEEEeeCCcCCCCCH----HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 456666666666665443 345678899999999999987666 8889999999999999885432 38999
Q ss_pred EEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCcccc-CCCccCeeecccc
Q 036642 610 SLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLC-DLAFLQIVDLADN 688 (938)
Q Consensus 610 ~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N 688 (938)
.|++++|.+++.++. .+++|+.|++++|.+.+..|..+. .+++|+.|++++|++++..|..+. .+++|+.|+|++|
T Consensus 103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999887662 357899999999999987777776 789999999999999998888886 7999999999999
Q ss_pred ccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccC
Q 036642 689 NLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKI 768 (938)
Q Consensus 689 ~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i 768 (938)
.+++..+. ..++ .|+.|+|++|++++ +
T Consensus 180 ~l~~~~~~--~~l~--------------------------------------------------~L~~L~Ls~N~l~~-~ 206 (487)
T 3oja_A 180 FIYDVKGQ--VVFA--------------------------------------------------KLKTLDLSSNKLAF-M 206 (487)
T ss_dssp CCCEEECC--CCCT--------------------------------------------------TCCEEECCSSCCCE-E
T ss_pred cccccccc--ccCC--------------------------------------------------CCCEEECCCCCCCC-C
Confidence 99865221 1222 34789999999996 5
Q ss_pred chhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccc-ccCCccccCCCCCCeEeCc
Q 036642 769 PLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLS-GEIPQSMSSLTYLNHLNLS 832 (938)
Q Consensus 769 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls 832 (938)
|+.++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5569999999999999999995 7888999999999999999999 6788889999888888886
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.3e-26 Score=273.62 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=12.0
Q ss_pred ccccCCCCCCEEECCCCC
Q 036642 234 LAIANFSTLTTLDLLYNQ 251 (938)
Q Consensus 234 ~~l~~l~~L~~L~L~~n~ 251 (938)
..+..+++|++|+++++.
T Consensus 60 ~~~~~~~~L~~L~L~~~~ 77 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKP 77 (594)
T ss_dssp HHHHHCTTCCEEEEECSC
T ss_pred HHHhhCCCceEEeccCCC
Confidence 345666777777777764
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=8.5e-23 Score=216.12 Aligned_cols=206 Identities=20% Similarity=0.220 Sum_probs=140.9
Q ss_pred cceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCC
Q 036642 560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639 (938)
Q Consensus 560 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N 639 (938)
.+.+++++++++. +|..+. +++++|++++|++++..+..|..+++|++|+|++|.+++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------- 75 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT------------------- 75 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-------------------
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-------------------
Confidence 4556666655552 333322 345555555555554444445555555555555555443
Q ss_pred ccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhh
Q 036642 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQF 719 (938)
Q Consensus 640 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~ 719 (938)
+|...+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..|..+++|
T Consensus 76 -----i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------- 135 (270)
T 2o6q_A 76 -----LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL--------------- 135 (270)
T ss_dssp -----CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred -----eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC---------------
Confidence 333332245555555666666555555556667777777777777776555555555544
Q ss_pred hhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccccc
Q 036642 720 LLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM 799 (938)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 799 (938)
+.|+|++|++++..+..++.+++|+.|+|++|.+++..|..|..+
T Consensus 136 -----------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 136 -----------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp -----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -----------------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 677888888886555568889999999999999998777789999
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCC
Q 036642 800 RSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 800 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 842 (938)
++|+.|||++|++++..+..+..+++|++|++++|++.|.++.
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 9999999999999987777789999999999999999988764
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=7e-24 Score=224.63 Aligned_cols=223 Identities=19% Similarity=0.173 Sum_probs=178.5
Q ss_pred CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECC
Q 036642 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG 637 (938)
Q Consensus 558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls 637 (938)
..+..+++.++.+.+.. ....+++|+.|++++|.++. ++ .+..+++|++|++++|.+++ ++.+..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECT
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECC
Confidence 44556667776666443 35567888888888888773 33 47778888888888888876 3577888888888888
Q ss_pred CCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhh
Q 036642 638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQY 717 (938)
Q Consensus 638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~ 717 (938)
+|.+.+..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 94 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------- 159 (272)
T 3rfs_A 94 GNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------- 159 (272)
T ss_dssp TSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence 8888765554444 78889999999998888777778889999999999999887666666666555
Q ss_pred hhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccc
Q 036642 718 QFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIG 797 (938)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 797 (938)
+.|++++|++++..|..++.+++|+.|++++|.+++..|..++
T Consensus 160 -------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 160 -------------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp -------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -------------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence 7889999999977777788999999999999999988888899
Q ss_pred ccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCC
Q 036642 798 AMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS 843 (938)
Q Consensus 798 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 843 (938)
.+++|+.|++++|++.+..| .|+++++++|.++|.+|..
T Consensus 203 ~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred CCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 99999999999999987644 5788899999999999864
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.6e-22 Score=214.95 Aligned_cols=216 Identities=25% Similarity=0.238 Sum_probs=120.6
Q ss_pred ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL 186 (938)
Q Consensus 107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~ 186 (938)
.++|..+. ++|++|++++|.+++. .+..+.++++|++|++++|.+++..+..|+++++|++|++++|.+....+..|
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccCCCCC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 34555543 3677777777777753 33466777777777777777776666677777777777777777766666666
Q ss_pred CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642 187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ 266 (938)
Q Consensus 187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 266 (938)
.++++|++|++++|.++.. ++..+.++++|++|++++|.+.+..+|..+..+++
T Consensus 97 ~~l~~L~~L~l~~n~l~~~--------------------------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASL--------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp TTCTTCCEEECTTSCCCCS--------------------------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred cCCccccEEECCCCCcccc--------------------------CchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence 6666666666666655544 33334444444444444444443222444444555
Q ss_pred CCEEEccCCcccCCCCccccCCCCCC----EEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCee
Q 036642 267 LVFLDLRRNNFQGPIPEGLQNLTSLK----HLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342 (938)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 342 (938)
|++|++++|.+++..+..+..+++|+ +|++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|
T Consensus 151 L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 55555555555444444444333333 55555555543322222 22355555555555554444445555555555
Q ss_pred ecCCCcCccc
Q 036642 343 MLSCVKLSQE 352 (938)
Q Consensus 343 ~L~~n~l~~~ 352 (938)
++++|.+.+.
T Consensus 230 ~l~~N~~~c~ 239 (276)
T 2z62_A 230 WLHTNPWDCS 239 (276)
T ss_dssp ECCSSCBCCC
T ss_pred EccCCccccc
Confidence 5555555443
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.6e-24 Score=242.58 Aligned_cols=240 Identities=15% Similarity=0.255 Sum_probs=154.7
Q ss_pred hhhccCCCcceeeccCccCCCccc----hhhhcCCCCCEEEcCCC---cccccCCccc-------CCCCCCcEEEccccc
Q 036642 552 YRAHELKKLQFLYLRGNFLQGELT----DCWMNYQNLMILDLSNN---KFTGNLPISL-------GSLISLQSLHLRKNN 617 (938)
Q Consensus 552 ~~l~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~ 617 (938)
..+..+++|++|++++|.+++..+ ..+..+++|++|++++| ++++.+|..+ ..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 344455666666666666654422 22445666666666664 3334444433 456666666666666
Q ss_pred ccc----ccc-ccccCcCCcEEECCCCccCCCCChhHhh---hc---------CcccEEeeCCCccc-ccCC---ccccC
Q 036642 618 LSG----TIH-SLKNCTALLTLDVGENEFVENIPTWIGE---RF---------SRMVVLILRSNKFH-SLLP---KGLCD 676 (938)
Q Consensus 618 l~~----~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~l~~ 676 (938)
+++ .++ .+..+++|++|+|++|.+.+..+..+.. .+ ++|++|++++|+++ +.++ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 665 244 5666666666666666664333333321 22 67777777777776 3333 35556
Q ss_pred CCccCeeecccccccc-----ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhc
Q 036642 677 LAFLQIVDLADNNLSG-----EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCIL 751 (938)
Q Consensus 677 l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (938)
+++|+.|++++|+++. .+|..+..+
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-------------------------------------------------- 215 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-------------------------------------------------- 215 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGC--------------------------------------------------
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcC--------------------------------------------------
Confidence 7777777777777762 122233332
Q ss_pred cceeEEEeecCccC----ccCchhccCccCCCEEeCcCccCccc----CCcccc--ccCCCCEEECCCCcccc----cCC
Q 036642 752 NLVRIIDFSKNNFS----GKIPLEVTNLKALQSFNLSNNFFTGR----IPESIG--AMRSLESIDFSLNQLSG----EIP 817 (938)
Q Consensus 752 ~~l~~L~Ls~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~--~l~~L~~LdLs~N~l~~----~ip 817 (938)
+.|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+. .+++|+.|+|++|++++ .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 23477888888885 56788888888888899999888866 566663 38889999999999887 478
Q ss_pred ccc-cCCCCCCeEeCcCCcccccCC
Q 036642 818 QSM-SSLTYLNHLNLSNNNLTGKIP 841 (938)
Q Consensus 818 ~~l-~~l~~L~~L~ls~N~l~g~ip 841 (938)
..+ .++++|++|++++|++++..|
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhcCCCceEEEccCCcCCcchh
Confidence 777 668889999999998887664
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.8e-22 Score=213.91 Aligned_cols=205 Identities=19% Similarity=0.161 Sum_probs=130.0
Q ss_pred ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEE
Q 036642 555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTL 634 (938)
Q Consensus 555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L 634 (938)
+.+++++++++++|.++ .+|..+. ++++.|++++|.+++..|..+..+++|+.|+|++|.+++..+. ..+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l------ 76 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL------ 76 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC------
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC------
Confidence 44566666666666666 3343332 4566666666666655555666666666666666665543222 344
Q ss_pred ECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccch
Q 036642 635 DVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKA 714 (938)
Q Consensus 635 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~ 714 (938)
++|++|++++|+++ .+|..+..+++|+.|++++|++++..|..|..+++|
T Consensus 77 -------------------~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L---------- 126 (290)
T 1p9a_G 77 -------------------PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---------- 126 (290)
T ss_dssp -------------------TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC----------
T ss_pred -------------------CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC----------
Confidence 44555555555544 244455556666666666666665555555555444
Q ss_pred hhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCc
Q 036642 715 IQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPE 794 (938)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 794 (938)
+.|+|++|++++..|..+..+++|+.|+|++|++++..+.
T Consensus 127 ----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 127 ----------------------------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp ----------------------------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred ----------------------------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 5666777777755555567777788888888888755555
Q ss_pred cccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccC
Q 036642 795 SIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKI 840 (938)
Q Consensus 795 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 840 (938)
.|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.|.+
T Consensus 167 ~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred HhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 6677788888888888887 57777777778888888888887755
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.2e-22 Score=215.11 Aligned_cols=208 Identities=20% Similarity=0.206 Sum_probs=167.0
Q ss_pred ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcE
Q 036642 555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLT 633 (938)
Q Consensus 555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~ 633 (938)
..+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ .+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 346777888888887763 2 3477788888888888888753 367788888888888888887766 6788888888
Q ss_pred EECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccc
Q 036642 634 LDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGK 713 (938)
Q Consensus 634 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~ 713 (938)
|++++|++.+..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..+++|
T Consensus 114 L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------- 183 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL--------- 183 (272)
T ss_dssp EECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------
T ss_pred EECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC---------
Confidence 88888888765554444 68888899999998888777778889999999999999987666666666655
Q ss_pred hhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCC
Q 036642 714 AIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP 793 (938)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip 793 (938)
+.|++++|++++..|..++.+++|+.|++++|.+.+..
T Consensus 184 -----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~- 221 (272)
T 3rfs_A 184 -----------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC- 221 (272)
T ss_dssp -----------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-
T ss_pred -----------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-
Confidence 78899999999877777899999999999999988654
Q ss_pred ccccccCCCCEEECCCCcccccCCccccCCC
Q 036642 794 ESIGAMRSLESIDFSLNQLSGEIPQSMSSLT 824 (938)
Q Consensus 794 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 824 (938)
++|+.|+++.|+++|.+|.+++.+.
T Consensus 222 ------~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 222 ------PGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ------cHHHHHHHHHHhCCCcccCcccccC
Confidence 4689999999999999999987664
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=7.7e-22 Score=210.49 Aligned_cols=202 Identities=22% Similarity=0.193 Sum_probs=148.0
Q ss_pred CCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCC
Q 036642 529 SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 608 (938)
Q Consensus 529 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 608 (938)
++++++++++++.++. +|..+ .+.+++|++++|++++..+..+..+++|++|++++|.+++..+. +.+++|
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDL------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCC------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cCCccEEECCCCCCCc-CCCCC------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 5689999999999985 33221 36899999999999988889999999999999999999965443 789999
Q ss_pred cEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccc
Q 036642 609 QSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN 688 (938)
Q Consensus 609 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 688 (938)
++|++++|+++..+..+..+++|++|++++|+++ +..+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-------------------------~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-------------------------SLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-------------------------CCCSSTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCc-------------------------ccCHHHHcCCCCCCEEECCCC
Confidence 9999999998743335555555555555555554 444445555666666666666
Q ss_pred ccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccC
Q 036642 689 NLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKI 768 (938)
Q Consensus 689 ~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i 768 (938)
++++..+..|..+++| +.|+|++|++++..
T Consensus 135 ~l~~~~~~~~~~l~~L--------------------------------------------------~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKL--------------------------------------------------EKLSLANNNLTELP 164 (290)
T ss_dssp CCCCCCTTTTTTCTTC--------------------------------------------------CEEECTTSCCSCCC
T ss_pred CCCccChhhcccccCC--------------------------------------------------CEEECCCCcCCccC
Confidence 6664444444444433 56677777777444
Q ss_pred chhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642 769 PLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE 815 (938)
Q Consensus 769 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 815 (938)
+..+..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|++.+.
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 444577888888888888888 6788888888888888888888764
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.4e-23 Score=229.22 Aligned_cols=130 Identities=19% Similarity=0.165 Sum_probs=64.5
Q ss_pred eecCCccCccCCCCC---CCCCcEEEccCCccccccchhhhhhhccCC-CcceeeccCccCCCccchhhhcC-----CCC
Q 036642 514 LSLGSNSFSGALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELK-KLQFLYLRGNFLQGELTDCWMNY-----QNL 584 (938)
Q Consensus 514 L~L~~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~~~~l-----~~L 584 (938)
++++.|.+++.+|.. .++|++|++++|.+++..+..+...+..++ +|++|++++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 455556665554432 234555566555555544444444445555 55555555555555444444443 555
Q ss_pred CEEEcCCCcccccCCcccC----CC-CCCcEEEccccccccccc-c----ccc-CcCCcEEECCCCccCC
Q 036642 585 MILDLSNNKFTGNLPISLG----SL-ISLQSLHLRKNNLSGTIH-S----LKN-CTALLTLDVGENEFVE 643 (938)
Q Consensus 585 ~~L~Ls~n~l~~~~p~~~~----~l-~~L~~L~L~~n~l~~~~~-~----l~~-l~~L~~L~Ls~N~l~~ 643 (938)
++|++++|.+++..+..+. .+ ++|++|+|++|++++..+ . +.. .++|++|++++|.+.+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 5555555555544443222 22 455555555555544332 2 122 2355555555555543
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=4e-23 Score=228.68 Aligned_cols=160 Identities=21% Similarity=0.178 Sum_probs=76.1
Q ss_pred EEccCCccccccchhhhhhhccCCCcceeeccCccCCCccc----hhhhcCC-CCCEEEcCCCcccccCCcccCCC----
Q 036642 535 LDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELT----DCWMNYQ-NLMILDLSNNKFTGNLPISLGSL---- 605 (938)
Q Consensus 535 L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l---- 605 (938)
++++.|.+++.+|.. +...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF----TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHH----HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHH----HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 345555555544322 1223335555555555554444 4444555 55555555555555444444443
Q ss_pred -CCCcEEEccccccccccc-c----cccC-cCCcEEECCCCccCCCCChhHhhh----cCcccEEeeCCCcccccCC---
Q 036642 606 -ISLQSLHLRKNNLSGTIH-S----LKNC-TALLTLDVGENEFVENIPTWIGER----FSRMVVLILRSNKFHSLLP--- 671 (938)
Q Consensus 606 -~~L~~L~L~~n~l~~~~~-~----l~~l-~~L~~L~Ls~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~~~~~--- 671 (938)
++|++|+|++|.+++..+ . +..+ ++|++|++++|++.+..+..+... .++|++|++++|++++..+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 555555555555554333 2 2222 455555555555554444333211 2355555555555553222
Q ss_pred -ccccCCC-ccCeeeccccccccccchhh
Q 036642 672 -KGLCDLA-FLQIVDLADNNLSGEVPRCI 698 (938)
Q Consensus 672 -~~l~~l~-~L~~L~Ls~N~l~~~~p~~l 698 (938)
..+..++ +|+.|++++|++++..+..+
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 187 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAEL 187 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHH
Confidence 2223333 55555555555554444433
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=4.2e-23 Score=230.98 Aligned_cols=237 Identities=19% Similarity=0.237 Sum_probs=184.7
Q ss_pred CCCcEEEccCCccccccchhhhhhhccCCCcceeeccCc---cCCCccchhh-------hcCCCCCEEEcCCCcccc---
Q 036642 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGN---FLQGELTDCW-------MNYQNLMILDLSNNKFTG--- 596 (938)
Q Consensus 530 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n---~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~--- 596 (938)
++|++|++++|.+++..+..++..+..+++|++|++++| ++++.+|..+ ..+++|++|++++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 456667777777766655556666777888888888885 4445556554 678899999999999886
Q ss_pred -cCCcccCCCCCCcEEEccccccccccc-----ccccC---------cCCcEEECCCCccC-CCCCh---hHhhhcCccc
Q 036642 597 -NLPISLGSLISLQSLHLRKNNLSGTIH-----SLKNC---------TALLTLDVGENEFV-ENIPT---WIGERFSRMV 657 (938)
Q Consensus 597 -~~p~~~~~l~~L~~L~L~~n~l~~~~~-----~l~~l---------~~L~~L~Ls~N~l~-~~~p~---~~~~~l~~L~ 657 (938)
.+|..+..+++|++|+|++|.+++..+ .+..+ ++|++|++++|++. +.+|. .+. .+++|+
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLH 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCC
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcC
Confidence 467778888999999999998875433 34444 89999999999987 34442 333 688999
Q ss_pred EEeeCCCcccc-----cCCccccCCCccCeeeccccccc----cccchhhhcchhhhhccccccchhhhhhhhccCCCcc
Q 036642 658 VLILRSNKFHS-----LLPKGLCDLAFLQIVDLADNNLS----GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPS 728 (938)
Q Consensus 658 ~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 728 (938)
.|++++|+++. ..|..+..+++|+.|+|++|.++ +.+|..+..+++|
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L------------------------ 246 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL------------------------ 246 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC------------------------
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc------------------------
Confidence 99999999883 34557888999999999999996 5566666555544
Q ss_pred hhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc----Cchhc--cCccCCCEEeCcCccCcc----cCCccc-c
Q 036642 729 TAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK----IPLEV--TNLKALQSFNLSNNFFTG----RIPESI-G 797 (938)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~----ip~~l--~~l~~L~~L~Ls~N~l~~----~ip~~~-~ 797 (938)
+.|+|++|++++. +|..+ +.+++|+.|+|++|.+++ .+|..+ .
T Consensus 247 --------------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 247 --------------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp --------------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred --------------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 7899999999876 67777 449999999999999998 588888 6
Q ss_pred ccCCCCEEECCCCcccccCC
Q 036642 798 AMRSLESIDFSLNQLSGEIP 817 (938)
Q Consensus 798 ~l~~L~~LdLs~N~l~~~ip 817 (938)
++++|++|++++|++++..|
T Consensus 301 ~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HCTTCCEEECTTSBSCTTSH
T ss_pred cCCCceEEEccCCcCCcchh
Confidence 78999999999999998764
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=219.73 Aligned_cols=199 Identities=21% Similarity=0.212 Sum_probs=125.4
Q ss_pred CCCEEEcCCCcccccCCccc--CCCCCCcEEEccccccccccc-----ccccCcCCcEEECCCCccCCCCChhHhhhcCc
Q 036642 583 NLMILDLSNNKFTGNLPISL--GSLISLQSLHLRKNNLSGTIH-----SLKNCTALLTLDVGENEFVENIPTWIGERFSR 655 (938)
Q Consensus 583 ~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~-----~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~ 655 (938)
+|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ .+..+++|++|++++|++.+..|..+. .+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCCC
Confidence 34444444444444444444 444444444444444443211 122344555555555555443333333 4555
Q ss_pred ccEEeeCCCccccc--C--CccccCCCccCeeeccccccccccchh----hhcchhhhhccccccchhhhhhhhccCCCc
Q 036642 656 MVVLILRSNKFHSL--L--PKGLCDLAFLQIVDLADNNLSGEVPRC----IHNLRAMVTLNSHAGKAIQYQFLLYASRAP 727 (938)
Q Consensus 656 L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 727 (938)
|++|++++|++.+. + +..+..+++|++|++++|+++ .+|.. +..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l-------------------------- 223 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG-------------------------- 223 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT--------------------------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC--------------------------
Confidence 55555555554431 1 223456788888888888886 23321 1222
Q ss_pred chhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCc---cCCCEEeCcCccCcccCCccccccCCCCE
Q 036642 728 STAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNL---KALQSFNLSNNFFTGRIPESIGAMRSLES 804 (938)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~ 804 (938)
+.|+.|||++|++++.+|+.++.+ ++|+.|+|++|+++ .+|..+. ++|+.
T Consensus 224 ------------------------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~ 276 (310)
T 4glp_A 224 ------------------------VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRV 276 (310)
T ss_dssp ------------------------CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSC
T ss_pred ------------------------CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCE
Confidence 234778899999998888888777 69999999999999 7788775 79999
Q ss_pred EECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642 805 IDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG 838 (938)
Q Consensus 805 LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 838 (938)
|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99999999964 44 6788999999999999874
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.9e-21 Score=200.94 Aligned_cols=192 Identities=23% Similarity=0.272 Sum_probs=124.4
Q ss_pred CCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCC
Q 036642 64 DCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGN 143 (938)
Q Consensus 64 ~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~ 143 (938)
+||.|.|++|.. ..+.+++++ .-...+|..+. +++++|+|++|.+++. .+..+.++++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~----------------~~l~~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~ 60 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQG----------------KSLDSVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTK 60 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTT----------------CCCSSCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred cCCCCCceEcCC---CCeEEecCC----------------CCccccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCccc
Confidence 689999999953 223466665 22335666554 4788888888888764 5556777888
Q ss_pred CcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEc
Q 036642 144 LRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRL 223 (938)
Q Consensus 144 L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L 223 (938)
|++|+|++|.+++..|..|.++++|++|++++|++....+..|..+++|++|++++|+++
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------- 120 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-------------------- 120 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC--------------------
Confidence 888888888888777777788888888888877777665555555555555555555544
Q ss_pred CCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCC
Q 036642 224 SRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNS 303 (938)
Q Consensus 224 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 303 (938)
++++..|.++++|++|++++|++++.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 121 ------~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 121 ------SLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ------CcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 444444555555555555555555422 3345556666666666666665555566667777777777777665
Q ss_pred c
Q 036642 304 S 304 (938)
Q Consensus 304 ~ 304 (938)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 4
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=5e-22 Score=214.83 Aligned_cols=232 Identities=14% Similarity=0.143 Sum_probs=172.1
Q ss_pred CCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhh--hcCCCCCEEEcCCCcccccCC----cccC
Q 036642 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCW--MNYQNLMILDLSNNKFTGNLP----ISLG 603 (938)
Q Consensus 530 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~p----~~~~ 603 (938)
..++.+.+.++.++......... ...+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..| ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35678888888776532222211 1234668999999999988888877 888899999999999887655 3445
Q ss_pred CCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCC--CC-hhHhhhcCcccEEeeCCCcccccC--Cc-cccC
Q 036642 604 SLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVEN--IP-TWIGERFSRMVVLILRSNKFHSLL--PK-GLCD 676 (938)
Q Consensus 604 ~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~--~p-~~~~~~l~~L~~L~L~~n~l~~~~--~~-~l~~ 676 (938)
.+++|++|+|++|++++.++ .+..+++|++|++++|++.+. ++ ......+++|++|++++|+++... +. .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 78899999999999988777 888889999999999987652 11 121226788999999999886421 12 2467
Q ss_pred CCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeE
Q 036642 677 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRI 756 (938)
Q Consensus 677 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 756 (938)
+++|+.||+++|++++.+|+.+..+..+ +.|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~-----------------------------------------------~~L~~ 255 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWS-----------------------------------------------SALNS 255 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCC-----------------------------------------------TTCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCc-----------------------------------------------CcCCE
Confidence 7889999999999988778776655322 12377
Q ss_pred EEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccc
Q 036642 757 IDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG 814 (938)
Q Consensus 757 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~ 814 (938)
|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus 256 L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 256 LNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 889999998 7788775 7899999999999853 44 6778889999999998874
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.6e-21 Score=203.97 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=138.4
Q ss_pred CCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEee
Q 036642 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLIL 661 (938)
Q Consensus 583 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L 661 (938)
+.++++++++.++ .+|..+. ++++.|+|++|.+++..+ .+.+ +++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~-------------------------l~~L~~L~L 66 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRG-------------------------LTKLTWLNL 66 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTT-------------------------CTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcC-------------------------cccCCEEEC
Confidence 4556677766666 4554443 456666666666555444 4444 445555555
Q ss_pred CCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeec
Q 036642 662 RSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMK 741 (938)
Q Consensus 662 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (938)
++|++++..+..+..+++|+.|++++|++++..|..+..+++|
T Consensus 67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------------------------------- 109 (251)
T 3m19_A 67 DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL------------------------------------- 109 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred CCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence 5555555555556666777777777777765555555554444
Q ss_pred CcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCcccc
Q 036642 742 GRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS 821 (938)
Q Consensus 742 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~ 821 (938)
+.|+|++|++++..|..++.+++|+.|+|++|++++..|..|+.+++|++|||++|++++..|..+.
T Consensus 110 -------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 110 -------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence 6777888888865555678889999999999999977777899999999999999999988888899
Q ss_pred CCCCCCeEeCcCCcccccCCCCCcCCC------cCCCCcCCCCCCCCCCCCCCCCC
Q 036642 822 SLTYLNHLNLSNNNLTGKIPSSTQLQS------FDASSYAGNDLCGAPLPRNCSEH 871 (938)
Q Consensus 822 ~l~~L~~L~ls~N~l~g~ip~~~~~~~------~~~~~~~~n~lc~~~~~~~c~~~ 871 (938)
.+++|++|++++|+++|..+....+.. .......|+.+|+.|....|+..
T Consensus 177 ~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 177 RLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp TCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 999999999999999987443211111 11122346677777777778644
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.9e-22 Score=221.29 Aligned_cols=248 Identities=19% Similarity=0.242 Sum_probs=167.0
Q ss_pred CcEEEccCCccccccchhhhhhhccC--CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCccccc-CCcccCCCCCC
Q 036642 532 LIELDFSNNSISGSIFHFICYRAHEL--KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGN-LPISLGSLISL 608 (938)
Q Consensus 532 L~~L~ls~n~l~~~~~~~~~~~l~~l--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L 608 (938)
++.++++++.+... .+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|
T Consensus 49 ~~~l~l~~~~~~~~-------~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNLHPD-------VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp SSEEECTTCBCCHH-------HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred heeeccccccCCHH-------HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 55566666655421 12223 5677777777777766554 44577777777777777654 66667777777
Q ss_pred cEEEccccccccccc-ccccCcCCcEEECCCC-ccCCC-CChhHhhhcCcccEEeeCCC-ccccc-CCccccCCC-ccCe
Q 036642 609 QSLHLRKNNLSGTIH-SLKNCTALLTLDVGEN-EFVEN-IPTWIGERFSRMVVLILRSN-KFHSL-LPKGLCDLA-FLQI 682 (938)
Q Consensus 609 ~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~ 682 (938)
++|++++|.+++..+ .+..+++|++|++++| .+++. ++..+. .+++|++|++++| ++++. ++..+..++ +|+.
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 777777777776655 6777777777777777 45542 443343 6777777777777 77654 456667777 7888
Q ss_pred eecccc--ccc-cccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEe
Q 036642 683 VDLADN--NLS-GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF 759 (938)
Q Consensus 683 L~Ls~N--~l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 759 (938)
|++++| .++ +.+|..+..+++ |+.|++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~--------------------------------------------------L~~L~l 229 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPN--------------------------------------------------LVHLDL 229 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTT--------------------------------------------------CSEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCC--------------------------------------------------CCEEeC
Confidence 888877 343 344444444333 478888
Q ss_pred ecCc-cCccCchhccCccCCCEEeCcCcc-CcccCCccccccCCCCEEECCCCcccccCCccccCC-CCCCeEeCcCCcc
Q 036642 760 SKNN-FSGKIPLEVTNLKALQSFNLSNNF-FTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSL-TYLNHLNLSNNNL 836 (938)
Q Consensus 760 s~N~-l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l 836 (938)
++|. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++. ..+..+ ..+..|++++|++
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccC
Confidence 8888 777788888888999999999885 33222236788889999999988 332 234444 2366777888999
Q ss_pred cccCCC
Q 036642 837 TGKIPS 842 (938)
Q Consensus 837 ~g~ip~ 842 (938)
++..|.
T Consensus 306 ~~~~~~ 311 (336)
T 2ast_B 306 TTIARP 311 (336)
T ss_dssp CCTTCS
T ss_pred ccccCC
Confidence 887775
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=7.8e-23 Score=224.38 Aligned_cols=271 Identities=18% Similarity=0.161 Sum_probs=148.8
Q ss_pred CCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCC--CCCCEEeCCCCCCCCCcccccccC
Q 036642 63 EDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDL--KHLSYLDLSYNDFQGVQIPRFICS 140 (938)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~l~~ 140 (938)
.-|.+|.++.|+. ..++.+++++. .+. +..+..+ +++++|++++|.+.+. .+. +.+
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~---------------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~ 91 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGK---------------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFS 91 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTC---------------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCC
T ss_pred HHHHHHHHHhcCc--hhheeeccccc---------------cCC---HHHHHhhhhccceEEEcCCcccccc-chh-hcc
Confidence 4567899998863 34667777662 222 2334444 6777777777777653 333 446
Q ss_pred CCCCcEEecCCCcCCCC-CCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCC-CCCCCcchhhhhCCCCCC
Q 036642 141 MGNLRYLNLSYTQFVGM-IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV-NLSKASDWLRVTNTLPSL 218 (938)
Q Consensus 141 l~~L~~L~Ls~n~l~~~-~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~l~~L 218 (938)
+++|++|++++|.+++. +|..+.++++|++|++++|.+....+..+..+++|++|++++| .++.. .++..
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~------- 163 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTL------- 163 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHH-------
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-HHHHH-------
Confidence 77777777777776654 5666677777777777777665544444555555555555555 33321 12223
Q ss_pred cEEEcCCCCCCCCCcccccCCCCCCEEECCCC-CCCCccCcccccCCC-CCCEEEccCC--ccc-CCCCccccCCCCCCE
Q 036642 219 VKLRLSRCQLHHLPPLAIANFSTLTTLDLLYN-QFDNSFVPNWVFGLI-QLVFLDLRRN--NFQ-GPIPEGLQNLTSLKH 293 (938)
Q Consensus 219 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~ 293 (938)
+.++++|++|++++| .+++..++..+..++ +|++|++++| .++ +.+|..+..+++|++
T Consensus 164 -----------------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 164 -----------------LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp -----------------HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred -----------------HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 344445555555555 444322244444555 5555555555 233 234444555566666
Q ss_pred EECcCCc-CCCccchhhhcCCCCCEEEccCCc-CCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEE
Q 036642 294 LLLDSNR-FNSSIPNWLYRFNRLESLGVSNNS-LQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEIL 371 (938)
Q Consensus 294 L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L 371 (938)
|++++|. +++..+..+..+++|++|++++|. +.......++++++|+.|++++| +....-. .+...++.|
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~-------~l~~~l~~L 298 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ-------LLKEALPHL 298 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH-------HHHHHSTTS
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHH-------HHHhhCcce
Confidence 6666665 444555555666666666666662 33333334556666666666666 3322111 111135556
Q ss_pred EccCCcCccccccccCC
Q 036642 372 VLRGSSVSGHLTYKLGQ 388 (938)
Q Consensus 372 ~l~~n~l~~~~~~~l~~ 388 (938)
++++|.+++..|..++.
T Consensus 299 ~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 299 QINCSHFTTIARPTIGN 315 (336)
T ss_dssp EESCCCSCCTTCSSCSS
T ss_pred EEecccCccccCCcccc
Confidence 66777777766665553
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.9e-21 Score=201.70 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=103.9
Q ss_pred CCCEEEcCCCcccccCCcccCCCCCCcEEEccccc-cccccc-ccccCcCCcEEECCC-CccCCCCChhHhhhcCcccEE
Q 036642 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN-LSGTIH-SLKNCTALLTLDVGE-NEFVENIPTWIGERFSRMVVL 659 (938)
Q Consensus 583 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~-~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~~l~~L~~L 659 (938)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+ .+.++++|++|++++ |++.+..+..+. .+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-CCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEE
Confidence 56666666666665555556666666666666664 554444 455555555555555 554432222222 45555555
Q ss_pred eeCCCcccccCCccccCCCccC---eeecccc-ccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccc
Q 036642 660 ILRSNKFHSLLPKGLCDLAFLQ---IVDLADN-NLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED 735 (938)
Q Consensus 660 ~L~~n~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (938)
++++|++++ +|. +..+++|+ .|++++| .+++..+..|..+++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------- 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------- 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence 555555554 333 44555555 5666665 5554333334443333
Q ss_pred eeeeecCcchhhhhhcccee-EEEeecCccCccCchhccCccCCCEEeCcCcc-CcccCCcccccc-CCCCEEECCCCcc
Q 036642 736 ALVVMKGRAAEYKCILNLVR-IIDFSKNNFSGKIPLEVTNLKALQSFNLSNNF-FTGRIPESIGAM-RSLESIDFSLNQL 812 (938)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l-~~L~~LdLs~N~l 812 (938)
+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|+.||+++|++
T Consensus 158 -------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 158 -------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp -------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred -------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 4 5555666665 444443333566666666663 665445556666 6666666666666
Q ss_pred cccCCccccCCCCCCeEeCcCC
Q 036642 813 SGEIPQSMSSLTYLNHLNLSNN 834 (938)
Q Consensus 813 ~~~ip~~l~~l~~L~~L~ls~N 834 (938)
++ +|.. .+++|+.|+++++
T Consensus 218 ~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 218 TA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CC-CCCT--TCTTCSEEECTTC
T ss_pred cc-CChh--HhccCceeeccCc
Confidence 53 3332 4455566666554
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.1e-20 Score=203.71 Aligned_cols=208 Identities=20% Similarity=0.305 Sum_probs=142.3
Q ss_pred eeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccC
Q 036642 563 LYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFV 642 (938)
Q Consensus 563 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~ 642 (938)
+.+..+.+++.++ ...+++|++|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++.
T Consensus 24 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 24 IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS
T ss_pred HHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC
Confidence 3444444443322 3345666666666666663 33 45666666777777666665444 666667777777777665
Q ss_pred CCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhc
Q 036642 643 ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLY 722 (938)
Q Consensus 643 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~ 722 (938)
+ ++ .+. .+++|++|++++|++++. + .+..+++|+.|++++|.+++..+ +..+++
T Consensus 99 ~-~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~------------------- 152 (308)
T 1h6u_A 99 N-VS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN------------------- 152 (308)
T ss_dssp C-CG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT-------------------
T ss_pred C-ch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC-------------------
Confidence 4 33 333 577777777777777663 2 27778888888888888775433 333333
Q ss_pred cCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCC
Q 036642 723 ASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSL 802 (938)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L 802 (938)
|+.|++++|++++ +|. +..+++|+.|++++|.+++..| +..+++|
T Consensus 153 -------------------------------L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 197 (308)
T 1h6u_A 153 -------------------------------LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNL 197 (308)
T ss_dssp -------------------------------CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred -------------------------------ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCC
Confidence 3678888888885 444 8888889999999998885443 7888899
Q ss_pred CEEECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642 803 ESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG 838 (938)
Q Consensus 803 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 838 (938)
++|++++|++++..| +..+++|++|++++|++++
T Consensus 198 ~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 999999999886543 7888889999999998876
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.1e-20 Score=201.44 Aligned_cols=194 Identities=26% Similarity=0.309 Sum_probs=109.9
Q ss_pred cCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642 114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK 193 (938)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 193 (938)
.++++|++|++++|.++. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|++... ..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 456677777777777773 44 46677777777777777775433 77777777777777776543 2455566666
Q ss_pred EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEcc
Q 036642 194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLR 273 (938)
Q Consensus 194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 273 (938)
+|++++|.++.++ .+..+++|++|++++|.++++++ +..+++|++|++++|.+++
T Consensus 111 ~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~------------------- 165 (308)
T 1h6u_A 111 TLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD------------------- 165 (308)
T ss_dssp EEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-------------------
T ss_pred EEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-------------------
Confidence 6666666555542 14455555555555555555443 4445555555555555443
Q ss_pred CCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCcc
Q 036642 274 RNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQ 351 (938)
Q Consensus 274 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 351 (938)
. +. +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 166 ------~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 ------L-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ------C-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ------C-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 2 11 4444555555555555443222 4455555555555555554332 4555555555555555543
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=4.1e-21 Score=199.27 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=162.2
Q ss_pred cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCc-CCCCCCcCCCCCCcccEEECCC-CcccccCccc
Q 036642 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQ-FVGMIPPQLGNLSNLQYLDLSW-NFLYVENLWW 185 (938)
Q Consensus 108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~L~~L~~L~Ls~-n~i~~~~~~~ 185 (938)
++|. +.. +|++|++++|.++++ .+..+.++++|++|++++|. +++..+..|.++++|++|++++ |++....+..
T Consensus 25 ~ip~-~~~--~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 25 RIPS-LPP--STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SCCC-CCT--TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCC-CCC--cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4555 333 899999999999964 34478899999999999997 8877777899999999999998 9999888889
Q ss_pred cCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCc---EEEcCCC-CCCCCCcccccCCCCCC-EEECCCCCCCCccCccc
Q 036642 186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV---KLRLSRC-QLHHLPPLAIANFSTLT-TLDLLYNQFDNSFVPNW 260 (938)
Q Consensus 186 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~ 260 (938)
|.++++|++|++++|.++.++. +..+++|+ +|++++| .++++++..|.++++|+ +|++++|.++. + +..
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i-~~~ 174 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-V-QGY 174 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-E-CTT
T ss_pred hCCCCCCCEEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-c-CHh
Confidence 9999999999999999988654 66677777 9999999 89888888888899999 99999888873 3 443
Q ss_pred ccCCCCCCEEEccCCc-ccCCCCccccCC-CCCCEEECcCCcCCCccchhhhcCCCCCEEEccCC
Q 036642 261 VFGLIQLVFLDLRRNN-FQGPIPEGLQNL-TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNN 323 (938)
Q Consensus 261 ~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 323 (938)
....++|++|++++|+ +++..+..+..+ ++|++|++++|.+++ +|.. .+++|+.|+++++
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 3334788888888884 776666677777 888888888888874 3332 5667777777665
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.7e-20 Score=186.13 Aligned_cols=161 Identities=24% Similarity=0.278 Sum_probs=114.4
Q ss_pred CCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEe
Q 036642 117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLD 196 (938)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 196 (938)
++|++|++++|.++++ .+..++.+++|++|++++|++++..+..|.++++|++|++++|.+.......|.++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4899999999999864 455678899999999999999977777788999999999999988877766677777777777
Q ss_pred CCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCc
Q 036642 197 LSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN 276 (938)
Q Consensus 197 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 276 (938)
+++|.++.++. ..+..+++|++|++++|+++++++..+..+++|++|++++|.+.+ .+++|++|+++.|.
T Consensus 107 L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 107 LNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINK 176 (208)
T ss_dssp CCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHH
T ss_pred cCCCcCcccCH--hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHh
Confidence 77777766533 345566666666666666666666556666666666666665433 23455555555555
Q ss_pred ccCCCCccccCC
Q 036642 277 FQGPIPEGLQNL 288 (938)
Q Consensus 277 l~~~~p~~l~~l 288 (938)
++|.+|+.++.+
T Consensus 177 ~~g~ip~~~~~l 188 (208)
T 2o6s_A 177 HSGVVRNSAGSV 188 (208)
T ss_dssp CTTTBBCTTSSB
T ss_pred CCceeeccCccc
Confidence 555555555444
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=7.7e-20 Score=211.20 Aligned_cols=187 Identities=26% Similarity=0.336 Sum_probs=108.7
Q ss_pred CcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCC
Q 036642 559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGE 638 (938)
Q Consensus 559 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~ 638 (938)
+++.|++++|++++ +|..+ .++|+.|++++|+++ .+| ..+++|+.|+|++|++++ +|.+.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCC
Confidence 66777777777765 45433 256777777777766 455 345666777777776666 332333 666666666
Q ss_pred CccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhh
Q 036642 639 NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQ 718 (938)
Q Consensus 639 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~ 718 (938)
|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|. +. ++
T Consensus 130 N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~--------------- 181 (571)
T 3cvr_A 130 NQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES--------------- 181 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT---------------
T ss_pred CcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC---------------
Confidence 66665 554 35666666666666665 443 34566666666666654 443 32 22
Q ss_pred hhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCC-------CEEeCcCccCccc
Q 036642 719 FLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKAL-------QSFNLSNNFFTGR 791 (938)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~~~ 791 (938)
|+.|+|++|+|+ .+|. +.. +| +.|+|++|.|+ .
T Consensus 182 -----------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~ 221 (571)
T 3cvr_A 182 -----------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-H 221 (571)
T ss_dssp -----------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-C
T ss_pred -----------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-e
Confidence 245666666666 4555 443 45 66666666666 4
Q ss_pred CCccccccCCCCEEECCCCcccccCCccccCC
Q 036642 792 IPESIGAMRSLESIDFSLNQLSGEIPQSMSSL 823 (938)
Q Consensus 792 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l 823 (938)
+|..+..+++|+.|||++|++++.+|..+..+
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 56655556666666666666666666555544
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.4e-19 Score=209.02 Aligned_cols=210 Identities=20% Similarity=0.264 Sum_probs=138.0
Q ss_pred CCCCCCCCCCc-----cccce-eeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCC
Q 036642 56 LASWIGYEDCC-----AWAGV-VCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDF 129 (938)
Q Consensus 56 l~~W~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l 129 (938)
+.+|....++| .|.|+ .|.. ++++.+++++. .+.+ +|..+. ++|++|+|++|.+
T Consensus 33 l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n---------------~L~~-lp~~l~--~~L~~L~Ls~N~l 92 (571)
T 3cvr_A 33 WDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRL---------------NLSS-LPDNLP--PQITVLEITQNAL 92 (571)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS---------------CCSC-CCSCCC--TTCSEEECCSSCC
T ss_pred HHHHhccCCccccccchhhhcccccc--CCccEEEeCCC---------------CCCc-cCHhHc--CCCCEEECcCCCC
Confidence 34563335566 79999 7853 46888888873 4444 777663 6888888888888
Q ss_pred CCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchh
Q 036642 130 QGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWL 209 (938)
Q Consensus 130 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 209 (938)
+ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++++|++..+.. .+++|+.|++++|.++
T Consensus 93 ~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~------ 153 (571)
T 3cvr_A 93 I--SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLT------ 153 (571)
T ss_dssp S--CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS------
T ss_pred c--ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCccC------
Confidence 8 366 457888888888888886 565 655 78888888777665332 3445555555555544
Q ss_pred hhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCC
Q 036642 210 RVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289 (938)
Q Consensus 210 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 289 (938)
+++. .+++|++|++++|.+++ +|. +. ++|++|+|++|.++ .+|. +..
T Consensus 154 --------------------~lp~----~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-- 200 (571)
T 3cvr_A 154 --------------------MLPE----LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-- 200 (571)
T ss_dssp --------------------CCCC----CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCS-SCCC-CC---
T ss_pred --------------------cCCC----cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCC-chhh-HHH--
Confidence 4332 34455555555555554 233 33 56666666666665 4444 332
Q ss_pred CC-------CEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCC
Q 036642 290 SL-------KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCN 338 (938)
Q Consensus 290 ~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 338 (938)
+| ++|++++|.++ .+|..+..+++|++|++++|.+++.+|..+..++.
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 45 88888888887 46777777888888888888888888888777653
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1e-18 Score=176.92 Aligned_cols=181 Identities=21% Similarity=0.180 Sum_probs=131.4
Q ss_pred CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCC
Q 036642 120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY 199 (938)
Q Consensus 120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 199 (938)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|+++++|++|++++|++.......|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT--SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc--CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 56777888777 456544 56899999999999987777889999999999999999877777788888888888888
Q ss_pred CCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccC
Q 036642 200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG 279 (938)
Q Consensus 200 n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 279 (938)
|.++.++. ..+..+++|++|++++|+++++++..+.++++|++|++++|.+++.. +..+..+++|++|++++|.+.+
T Consensus 86 n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 86 NQLQSLPN--GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp SCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCC
T ss_pred CcCCccCH--hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCeec
Confidence 88776543 34567777777777777777777766777777777777777776532 4445666677777777665543
Q ss_pred CCCccccCCCCCCEEECcCCcCCCccchhhhcCCC
Q 036642 280 PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNR 314 (938)
Q Consensus 280 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 314 (938)
.+++|++|+++.|.++|.+|.+++.++.
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3445666666666666666666555443
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=184.71 Aligned_cols=178 Identities=20% Similarity=0.227 Sum_probs=142.8
Q ss_pred cEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCC-ccccCCCccCeeeccccccccccchhhhcchhhhhcccc
Q 036642 632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLP-KGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSH 710 (938)
Q Consensus 632 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~ 710 (938)
+.+++++|.+.. +|..+. +.+++|++++|++++..+ ..|..+++|+.|++++|.+++..|..|..+++|
T Consensus 14 ~~l~~s~n~l~~-iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCccc-CccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 467777777654 665442 456788888888888755 457889999999999999987777777776665
Q ss_pred ccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcc
Q 036642 711 AGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG 790 (938)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~ 790 (938)
+.|+|++|++++..|..++.+++|+.|+|++|++++
T Consensus 84 --------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 119 (220)
T 2v70_A 84 --------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119 (220)
T ss_dssp --------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC
T ss_pred --------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe
Confidence 788999999998888889999999999999999999
Q ss_pred cCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCC-CcCCCCCCCCC
Q 036642 791 RIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDAS-SYAGNDLCGAP 863 (938)
Q Consensus 791 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~-~~~~n~lc~~~ 863 (938)
..|..|+.+++|+.|||++|++++..|..+..+++|++|++++|+++|.++..+...++... .+.++..|+.|
T Consensus 120 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P 193 (220)
T 2v70_A 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKP 193 (220)
T ss_dssp BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEES
T ss_pred ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCC
Confidence 99999999999999999999999999999999999999999999999988754322222211 13445566554
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1.1e-18 Score=192.01 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=127.1
Q ss_pred CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCC-cccCCCCCCcE-EEccccccccccc-ccccCcCCcEE
Q 036642 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQS-LHLRKNNLSGTIH-SLKNCTALLTL 634 (938)
Q Consensus 558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~~-~l~~l~~L~~L 634 (938)
+++++|++++|+++...+.+|.++++|++|+|++|++.+.+| ..|.++++++. +.+.+|++++..+ .+.++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 345666666666664444456666666666666666654443 34556665554 4445566665555 56666666666
Q ss_pred ECCCCccCCCCChhHhhhcCcccEEeeCC-CcccccCCccccCCC-ccCeeeccccccccccchhhhcchhhhhcccccc
Q 036642 635 DVGENEFVENIPTWIGERFSRMVVLILRS-NKFHSLLPKGLCDLA-FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAG 712 (938)
Q Consensus 635 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~ 712 (938)
++++|++.+..+.... ...++..|++.+ +++....+..|..+. .++.|++++|+++ .+|.......+
T Consensus 110 ~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~--------- 178 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ--------- 178 (350)
T ss_dssp EEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEE---------
T ss_pred cccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccc---------
Confidence 6666666553333322 445566666644 455554455555553 4677777777776 34433222222
Q ss_pred chhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCch-hccCccCCCEEeCcCccCccc
Q 036642 713 KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPL-EVTNLKALQSFNLSNNFFTGR 791 (938)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~~~ 791 (938)
++.+++++|+..+.||. .|+.+++|+.|||++|+|+ .
T Consensus 179 -----------------------------------------L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~ 216 (350)
T 4ay9_X 179 -----------------------------------------LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216 (350)
T ss_dssp -----------------------------------------EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-C
T ss_pred -----------------------------------------hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-c
Confidence 25666764333335554 4577777777777777777 3
Q ss_pred CCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCc
Q 036642 792 IPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNN 835 (938)
Q Consensus 792 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~ 835 (938)
+|.. .+.+|+.|.+.++.--..+|. +.++++|+.++++++.
T Consensus 217 lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 217 LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 4432 244566666555544446663 6777777777777654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=6.4e-19 Score=193.80 Aligned_cols=235 Identities=16% Similarity=0.174 Sum_probs=164.5
Q ss_pred ceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcE-EECC
Q 036642 561 QFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLT-LDVG 637 (938)
Q Consensus 561 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~-L~Ls 637 (938)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.++ .|.+++++.+ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45777777777 566554 3578888888888886656678888888888888888877665 6777777665 5555
Q ss_pred CCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccc-ccccccc-hhhhcchhhhhccccccchh
Q 036642 638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN-NLSGEVP-RCIHNLRAMVTLNSHAGKAI 715 (938)
Q Consensus 638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~l~~~~~~~~ 715 (938)
.|++.+..|..+. .+++|++|++++|++++..+..+.....+..+++.++ .+. .+| ..|..+.
T Consensus 89 ~N~l~~l~~~~f~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~------------- 153 (350)
T 4ay9_X 89 ANNLLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLS------------- 153 (350)
T ss_dssp ETTCCEECTTSBC-CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSB-------------
T ss_pred CCcccccCchhhh-hccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcc-------------
Confidence 6777654444443 6778888888888887766666666667777777654 343 333 2332221
Q ss_pred hhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcC-ccCcccCC-
Q 036642 716 QYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSN-NFFTGRIP- 793 (938)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l~~~ip- 793 (938)
..++.|+|++|+++ .||.......+|+.|++++ |.++ .+|
T Consensus 154 ------------------------------------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~ 195 (350)
T 4ay9_X 154 ------------------------------------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPN 195 (350)
T ss_dssp ------------------------------------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCT
T ss_pred ------------------------------------hhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCH
Confidence 12478999999999 6888777788999999986 5566 555
Q ss_pred ccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCc
Q 036642 794 ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSY 854 (938)
Q Consensus 794 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~ 854 (938)
+.|+.+++|+.||||+|+|+..-+.. +..|+.|.+.+++--..+|....+..+.....
T Consensus 196 ~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 196 DVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp TTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred HHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 57899999999999999999544444 45566666666544457886655655544433
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.8e-18 Score=175.11 Aligned_cols=163 Identities=26% Similarity=0.248 Sum_probs=130.8
Q ss_pred CCCCCCCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCccccc
Q 036642 58 SWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRF 137 (938)
Q Consensus 58 ~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~ 137 (938)
.|+.....|.|.+|.|+.. -.+.+|..+. ++|++|+|++|.++++ .|..
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~----------------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~ 59 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK----------------------------RHASVPAGIP--TNAQILYLHDNQITKL-EPGV 59 (229)
T ss_dssp CCCCTTCEEETTEEECTTS----------------------------CCSSCCSCCC--TTCSEEECCSSCCCCC-CTTT
T ss_pred ccCCCCCEEeCCEeEccCC----------------------------CcCccCCCCC--CCCCEEEcCCCccCcc-CHHH
Confidence 3443388999999999641 1234555554 7899999999999975 6788
Q ss_pred ccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCC
Q 036642 138 ICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217 (938)
Q Consensus 138 l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~ 217 (938)
+..+++|++|+|++|++....+..|.++++|++|+|++|++.......|..+++|++|++++|+++.++ ..+..+++
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~ 136 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP---RGIERLTH 136 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC---TTGGGCTT
T ss_pred hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC---cccccCCC
Confidence 999999999999999998777777899999999999999999888888888889999999888888654 34567778
Q ss_pred CcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCC
Q 036642 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN 254 (938)
Q Consensus 218 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 254 (938)
|++|++++|+++++++..+..+++|+.|++++|.+..
T Consensus 137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8888888888887777777777777777777777654
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=9.6e-19 Score=178.30 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=133.8
Q ss_pred cEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccc
Q 036642 632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHA 711 (938)
Q Consensus 632 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~ 711 (938)
+.++++++.++. +|..+ .++++.|++++|++++..+..|..+++|+.|++++|++++..|..|..+++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCSS-CCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcCc-CCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 466777776654 56543 2578889999999888888888999999999999999998888888777665
Q ss_pred cchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCccc
Q 036642 712 GKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGR 791 (938)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ 791 (938)
+.|+|++|++++..+..+..+++|+.|+|++|++++.
T Consensus 83 -------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 83 -------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp -------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred -------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence 7889999999955445578999999999999999999
Q ss_pred CCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCC
Q 036642 792 IPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 792 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 842 (938)
.|..|+.+++|+.|||++|++++..|..+..+++|++|++++|++.|.++.
T Consensus 120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 999999999999999999999988888899999999999999999987653
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=2.9e-18 Score=182.97 Aligned_cols=189 Identities=19% Similarity=0.255 Sum_probs=102.4
Q ss_pred cceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCC
Q 036642 560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639 (938)
Q Consensus 560 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N 639 (938)
+..+.+..+.+++..+ +..+++|+.|++++|.+.+. + .+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 3344555555554322 34556666777777666633 3 35566666666666666655443 555555555555555
Q ss_pred ccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhh
Q 036642 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQF 719 (938)
Q Consensus 640 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~ 719 (938)
++.+ +| .+..+++|+.|++++|++++. +.+..+++
T Consensus 101 ~l~~-~~--------------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~---------------- 135 (291)
T 1h6t_A 101 KVKD-LS--------------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ---------------- 135 (291)
T ss_dssp CCCC-GG--------------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTT----------------
T ss_pred cCCC-Ch--------------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCC----------------
Confidence 5443 22 234444445555555544421 11222222
Q ss_pred hhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccccc
Q 036642 720 LLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM 799 (938)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 799 (938)
|+.|++++|++++. ..++.+++|+.|++++|++++..| ++.+
T Consensus 136 ----------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l 177 (291)
T 1h6t_A 136 ----------------------------------LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 177 (291)
T ss_dssp ----------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred ----------------------------------CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC
Confidence 24555555555532 345666666666666666664433 6666
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642 800 RSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG 838 (938)
Q Consensus 800 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 838 (938)
++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 178 ~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 178 TKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 666666666666664 33 36666666666666666654
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.4e-17 Score=170.79 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=131.2
Q ss_pred CcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhcccc
Q 036642 631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSH 710 (938)
Q Consensus 631 L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~ 710 (938)
-+.++.+++.+. .+|..+ .++|++|++++|++++..|..|..+++|+.|++++|++++..+..|..+++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 455677666654 366543 3778888888888888888888889999999999999875555556665554
Q ss_pred ccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcc
Q 036642 711 AGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG 790 (938)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~ 790 (938)
+.|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus 91 --------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~- 125 (229)
T 3e6j_A 91 --------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT- 125 (229)
T ss_dssp --------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred --------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-
Confidence 78899999999766677899999999999999999
Q ss_pred cCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCC
Q 036642 791 RIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 791 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 842 (938)
.+|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++.|.++.
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 8899999999999999999999987778899999999999999999998873
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=2.1e-20 Score=217.46 Aligned_cols=203 Identities=18% Similarity=0.173 Sum_probs=113.7
Q ss_pred ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcE
Q 036642 555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLT 633 (938)
Q Consensus 555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~ 633 (938)
..+++|+.|++++|+++ .+|..++++++|++|++++|......|. .+..+...+.+| .+.++++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence 34677788888888876 6777788888888888766542111110 011122334444 5555666666
Q ss_pred EE-CCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhcccccc
Q 036642 634 LD-VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAG 712 (938)
Q Consensus 634 L~-Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~ 712 (938)
|+ ++.|. +..|+.+.+.+|.++...+ ..|+.|++++|.+++ +|. ++.+++|
T Consensus 414 L~~l~~n~------------~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L-------- 465 (567)
T 1dce_A 414 VDPMRAAY------------LDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV-------- 465 (567)
T ss_dssp HCGGGHHH------------HHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC--------
T ss_pred Ccchhhcc------------cchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC--------
Confidence 55 44332 2233334444444443221 125556666666653 443 4444333
Q ss_pred chhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccC
Q 036642 713 KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI 792 (938)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i 792 (938)
+.|+|++|+++ .+|..++++++|+.|+|++|.|++ +
T Consensus 466 ------------------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 466 ------------------------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp ------------------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred ------------------------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence 45566666666 566666666666666666666664 4
Q ss_pred CccccccCCCCEEECCCCcccccC-CccccCCCCCCeEeCcCCcccccCCC
Q 036642 793 PESIGAMRSLESIDFSLNQLSGEI-PQSMSSLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 793 p~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~ 842 (938)
| .++.+++|+.|+|++|++++.+ |..+..+++|++|++++|++++.+|.
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 5 5666666666666666666555 66666666666666666666665443
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=9.9e-18 Score=178.81 Aligned_cols=171 Identities=21% Similarity=0.210 Sum_probs=89.0
Q ss_pred CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCc
Q 036642 140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV 219 (938)
Q Consensus 140 ~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~ 219 (938)
.+++|++|++++|.+... + .+..+++|++|++++|++....+ +..+++|++|++++|.++.++ .+..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS----SLKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG----GGTTCTTCC
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh----hhccCCCCC
Confidence 344555555555554422 2 24445555555555554443332 444444444444444444421 244555555
Q ss_pred EEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCC
Q 036642 220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN 299 (938)
Q Consensus 220 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 299 (938)
+|++++|+++++ ..+..+++|++|++++|.+++ ...+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc---chhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 555555555554 245555666666666666554 2345555666666666665554332 555666666666666
Q ss_pred cCCCccchhhhcCCCCCEEEccCCcCCc
Q 036642 300 RFNSSIPNWLYRFNRLESLGVSNNSLQG 327 (938)
Q Consensus 300 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 327 (938)
.+++. + .+..+++|+.|++++|.+..
T Consensus 189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 65542 2 25556666666666665543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=170.83 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=115.7
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC
Q 036642 585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN 664 (938)
Q Consensus 585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n 664 (938)
+.+++++|.++ .+|..+. +.++.|+|++|++++.. |...+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~-----------------------~~~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLE-----------------------ATGIFKKLPQLRKINFSNN 67 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEEC-----------------------CCCCGGGCTTCCEEECCSS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccC-----------------------chhhhccCCCCCEEECCCC
Confidence 46777777766 3555442 34456666666655443 2222225566666666666
Q ss_pred cccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcc
Q 036642 665 KFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRA 744 (938)
Q Consensus 665 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (938)
++++..+..|..+++|+.|++++|.+++..|..|..+++|
T Consensus 68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------------- 107 (220)
T 2v70_A 68 KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL---------------------------------------- 107 (220)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC----------------------------------------
T ss_pred cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC----------------------------------------
Confidence 6666666677778888888888888887766666666555
Q ss_pred hhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCC
Q 036642 745 AEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIP 817 (938)
Q Consensus 745 ~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip 817 (938)
+.|+|++|++++..|..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|++.+..+
T Consensus 108 ----------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 108 ----------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ----------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ----------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 678888999988888889999999999999999998889999999999999999999987655
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.6e-17 Score=194.17 Aligned_cols=129 Identities=26% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEEC
Q 036642 557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDV 636 (938)
Q Consensus 557 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L 636 (938)
+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..| +..+++|+.|+|++|.+++ ++.+..+++|+.|+|
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEe
Confidence 4556666666666653 22 35566666666666666664433 5566666666666666654 335666666666666
Q ss_pred CCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642 637 GENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP 695 (938)
Q Consensus 637 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 695 (938)
++|++.+ ++ .+. .+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..|
T Consensus 117 s~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 117 EHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred cCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 6666654 22 233 466666666666666654 455666666666666666665444
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.4e-17 Score=194.61 Aligned_cols=172 Identities=23% Similarity=0.279 Sum_probs=83.1
Q ss_pred cCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642 114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK 193 (938)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 193 (938)
..+++|++|++++|.+.. +| .+..+++|++|+|++|.+.+..| +.++++|++|+|++|.+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-------------- 100 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-------------- 100 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC--------------
T ss_pred hcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC--------------
Confidence 344455555555555542 22 24445555555555555553332 445555555555555443
Q ss_pred EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEcc
Q 036642 194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLR 273 (938)
Q Consensus 194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 273 (938)
.++ .+..+++|++|+|++|.++++ ..+..+++|+.|+|++|.+.+ ...+..+++|+.|+|+
T Consensus 101 ----------~l~----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 101 ----------DLS----SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLE 161 (605)
T ss_dssp ----------CCT----TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC---CGGGGSCTTCSEEECC
T ss_pred ----------CCh----hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC---chhhcccCCCCEEECc
Confidence 321 233444444444444444443 134445555555555555544 1344455555555555
Q ss_pred CCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCc
Q 036642 274 RNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG 327 (938)
Q Consensus 274 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 327 (938)
+|.+.+..| +..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 555554333 45555555555555555432 235555555555555555543
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=4.5e-20 Score=214.62 Aligned_cols=201 Identities=19% Similarity=0.229 Sum_probs=140.0
Q ss_pred CCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCe
Q 036642 603 GSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQI 682 (938)
Q Consensus 603 ~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 682 (938)
..+++|+.|+|++|+++..++.++++++|++|++++|.....+|.. +..+...+.+|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL------------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH------------HHhcccccCCHHHHHHHHhccc
Confidence 3456666777777776643336777777777777555321111111 1122344556677777777777
Q ss_pred ee-ccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeec
Q 036642 683 VD-LADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSK 761 (938)
Q Consensus 683 L~-Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~ 761 (938)
|+ ++.|.+. .|..+.+..+..... ....|+.|+|++
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l--------------------------------~~~~L~~L~Ls~ 450 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLKM--------------------------------EYADVRVLHLAH 450 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHHH--------------------------------HHTTCSEEECTT
T ss_pred Ccchhhcccc-----------hhhhhhhhccccccc--------------------------------CccCceEEEecC
Confidence 77 6666543 121111111110000 011358899999
Q ss_pred CccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccC-
Q 036642 762 NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKI- 840 (938)
Q Consensus 762 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i- 840 (938)
|++++ +|. ++.+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|+|++ +| .+..+++|++|++++|++++.+
T Consensus 451 n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~ 525 (567)
T 1dce_A 451 KDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAA 525 (567)
T ss_dssp SCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred CCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCC
Confidence 99996 787 999999999999999999 899999999999999999999997 78 8999999999999999999875
Q ss_pred CCC-CcCCCcCCCCcCCCCCCCCC
Q 036642 841 PSS-TQLQSFDASSYAGNDLCGAP 863 (938)
Q Consensus 841 p~~-~~~~~~~~~~~~~n~lc~~~ 863 (938)
|.. +.+..+....+.+|.+++.|
T Consensus 526 p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 526 IQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp TGGGGGCTTCCEEECTTSGGGGSS
T ss_pred cHHHhcCCCCCEEEecCCcCCCCc
Confidence 643 56667777778888887764
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=8e-18 Score=185.78 Aligned_cols=115 Identities=24% Similarity=0.188 Sum_probs=71.3
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccc-cCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeC
Q 036642 585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLK-NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILR 662 (938)
Q Consensus 585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~ 662 (938)
+.++++++.++ .+|..+. +.++.|+|++|++++..+ .+. ++++|+.|+|++|++.+..+..+. .+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence 57888888888 5676553 457888888888887666 555 677777777777766653333333 45566666666
Q ss_pred CCcccccCCccccCCCccCeeeccccccccccchhhhcchh
Q 036642 663 SNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRA 703 (938)
Q Consensus 663 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 703 (938)
+|++++..+..|..+++|+.|+|++|++++..|..|..+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 137 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCccc
Confidence 66665555555555555555555555555444444444333
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.4e-16 Score=162.23 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=62.4
Q ss_pred CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCC
Q 036642 120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY 199 (938)
Q Consensus 120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 199 (938)
+.++++++.++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|++....+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~--~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT--EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS--SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC--cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 34555555555 3444332 4566666666666555555566666666666666655555444444444444444444
Q ss_pred CCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCC
Q 036642 200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD 253 (938)
Q Consensus 200 n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 253 (938)
|.++.++. ..+..+++|++|+|++|+++++++..|..+++|++|+|++|.++
T Consensus 90 N~l~~l~~--~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 90 NKITELPK--SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp SCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCccCH--hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 44443322 22334444444444444444444444444444444444444443
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.7e-17 Score=165.23 Aligned_cols=109 Identities=22% Similarity=0.326 Sum_probs=82.4
Q ss_pred eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN 834 (938)
Q Consensus 755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 834 (938)
+.|+|++|++++.+|..++++++|+.|+|++|++++..|..|+++++|++|||++|++++.+|..+..+++|++|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 67788888888777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccccCCCCCcCCCcCCCCcCCC-CCCCCC
Q 036642 835 NLTGKIPSSTQLQSFDASSYAGN-DLCGAP 863 (938)
Q Consensus 835 ~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 863 (938)
+++|.+|..+...++....+.++ ..|+.|
T Consensus 137 ~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 137 PFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 88888774332222222233444 556554
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1e-16 Score=176.90 Aligned_cols=176 Identities=24% Similarity=0.190 Sum_probs=91.5
Q ss_pred CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCC-CCCcccEEECCCCcccccCccccCCCCCCCEEeCC
Q 036642 120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLG-NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLS 198 (938)
Q Consensus 120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 198 (938)
++++++++.++ .+|..+. +.+++|+|++|++++..+..+. ++++|++|+|++|++....+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~--~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP--NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS--SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC--ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 35556666555 3454332 3456666666666655555555 66666666666666655554445555555555544
Q ss_pred CCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCccc
Q 036642 199 YVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQ 278 (938)
Q Consensus 199 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 278 (938)
+|+++.++. ..+..+++|++|+|++|+++++.+..|.++++|++|+|++|++ +
T Consensus 97 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-------------------------~ 149 (361)
T 2xot_A 97 SNHLHTLDE--FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-------------------------S 149 (361)
T ss_dssp SSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-------------------------C
T ss_pred CCcCCcCCH--HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-------------------------C
Confidence 444443321 2334444444444444444444444444444444444444444 4
Q ss_pred CCCCccc---cCCCCCCEEECcCCcCCCccchhhhcCCC--CCEEEccCCcCC
Q 036642 279 GPIPEGL---QNLTSLKHLLLDSNRFNSSIPNWLYRFNR--LESLGVSNNSLQ 326 (938)
Q Consensus 279 ~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~ 326 (938)
+..+..+ ..+++|++|++++|.+++..+..+..++. ++.|++++|.+.
T Consensus 150 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 2222222 34566666666666666555555666665 366777777665
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8.6e-17 Score=160.97 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=51.4
Q ss_pred eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN 834 (938)
Q Consensus 755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 834 (938)
+.|++++|++++..|..++.+++|+.|++++|.+.+.+| .++.+++|+.|++++|++++ +| .+..+++|++|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 556666666666666666677777777777776333455 56777777777777777765 33 5667777777777777
Q ss_pred cccc
Q 036642 835 NLTG 838 (938)
Q Consensus 835 ~l~g 838 (938)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 7653
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=8.7e-18 Score=201.75 Aligned_cols=215 Identities=19% Similarity=0.173 Sum_probs=116.3
Q ss_pred CCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC---------ccchhhhcCCCCCEEEcCCCcccccCCc
Q 036642 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG---------ELTDCWMNYQNLMILDLSNNKFTGNLPI 600 (938)
Q Consensus 530 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 600 (938)
+.++.|++.+|.+..... ..++.++|+.|.+.+ ..+..+..++.|+.|+|++|.+. .+|.
T Consensus 173 ~~~~~l~L~~n~~~~~~~----------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~ 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ----------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISA 241 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCS-CCCG
T ss_pred CccceEEeeCCCCCcchh----------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCCh
Confidence 567888898888776221 224444444444432 45777888899999999999988 6777
Q ss_pred ccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCc
Q 036642 601 SLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAF 679 (938)
Q Consensus 601 ~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 679 (938)
.+..+++|++|+|++|.++ .+| .+.++++|++|+|++|+++ .+|..+. .+++|++|+|++|.++ .+|..|+.+++
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~ 317 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCN 317 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTT
T ss_pred hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCC
Confidence 7778999999999999998 455 8889999999999999988 6788877 7899999999999887 57878999999
Q ss_pred cCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEe
Q 036642 680 LQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF 759 (938)
Q Consensus 680 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 759 (938)
|+.|+|++|++++.+|..+..+.... ..++|
T Consensus 318 L~~L~L~~N~l~~~~p~~~~~~~~~~-------------------------------------------------~~l~l 348 (727)
T 4b8c_D 318 LQFLGVEGNPLEKQFLKILTEKSVTG-------------------------------------------------LIFYL 348 (727)
T ss_dssp CCCEECTTSCCCSHHHHHHHHHHHHH-------------------------------------------------HHHHH
T ss_pred ccEEeCCCCccCCCChHHHhhcchhh-------------------------------------------------hHHhh
Confidence 99999999999988888776543220 12467
Q ss_pred ecCccCccCchhccCccCCCEEeCcCc--------cCcccCCccccccCCCCEEECCCCcccc
Q 036642 760 SKNNFSGKIPLEVTNLKALQSFNLSNN--------FFTGRIPESIGAMRSLESIDFSLNQLSG 814 (938)
Q Consensus 760 s~N~l~g~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~~~~l~~L~~LdLs~N~l~~ 814 (938)
++|.++|.+|..+ +.|++++| .+.+.++..+.++..+....+++|-+.+
T Consensus 349 ~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 349 RDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp HHCCCCCCCCCC-----------------------------------------------CCCG
T ss_pred ccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 8888888888644 44566666 3444444445555556666666666553
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.8e-17 Score=199.05 Aligned_cols=140 Identities=22% Similarity=0.255 Sum_probs=77.7
Q ss_pred hhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCC
Q 036642 553 RAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTAL 631 (938)
Q Consensus 553 ~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L 631 (938)
.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.++ .+| .+.++++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3444555666666666655 44444555666666666666665 55555666666666666666665 333 55666666
Q ss_pred cEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCc-cCeeeccccccccccchh
Q 036642 632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAF-LQIVDLADNNLSGEVPRC 697 (938)
Q Consensus 632 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~N~l~~~~p~~ 697 (938)
++|+|++|.+. .+|..+. .+++|++|+|++|++++.+|..+..+.. +..+++++|.++|.+|..
T Consensus 296 ~~L~L~~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFG-NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SEEECCSSCCC-CCCSSTT-SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CEEECCCCCCC-ccChhhh-cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 66666666554 4555544 5566666666666666655555543321 223556666666555543
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.4e-16 Score=159.35 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=106.9
Q ss_pred hcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccE
Q 036642 579 MNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVV 658 (938)
Q Consensus 579 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~ 658 (938)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ . +..+. .+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-----------------------~--~~~l~-~l~~L~~ 92 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-----------------------N--YNPIS-GLSNLER 92 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-----------------------C--CGGGT-TCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-----------------------c--chhhh-cCCCCCE
Confidence 44455666666666555 333 3555555555555555332 1 12333 5677777
Q ss_pred EeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceee
Q 036642 659 LILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALV 738 (938)
Q Consensus 659 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (938)
|++++|++++..+..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 93 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L---------------------------------- 138 (197)
T 4ezg_A 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV---------------------------------- 138 (197)
T ss_dssp EEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC----------------------------------
T ss_pred EEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC----------------------------------
Confidence 7777777777677778888888888888888887777777666554
Q ss_pred eecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccc
Q 036642 739 VMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG 814 (938)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~ 814 (938)
+.|++++|++.+.+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 139 ----------------~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 ----------------NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ----------------CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ----------------CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 678888888444666 68889999999999999985 44 78899999999999999864
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=3.8e-17 Score=171.41 Aligned_cols=168 Identities=18% Similarity=0.226 Sum_probs=93.3
Q ss_pred CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD 194 (938)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 194 (938)
.+.+++.++++++.+++ ++ .+..+++|++|++++|.++. +| .++.+++|++|++++|++....+ +.++++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 45566777788887774 34 46677888888888887773 44 57777777777777777765544 566666666
Q ss_pred EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642 195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274 (938)
Q Consensus 195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 274 (938)
|++++|+++.++.. .. ++|++|++++|++++++ .+..+++|++|++++|++++. ..+..+++|++|++++
T Consensus 90 L~L~~N~l~~l~~~----~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 90 LSVNRNRLKNLNGI----PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHG 159 (263)
T ss_dssp EECCSSCCSCCTTC----CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTT
T ss_pred EECCCCccCCcCcc----cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCC
Confidence 66666666554321 11 45555555555555432 344455555555555544431 1334444444444444
Q ss_pred CcccCCCCccccCCCCCCEEECcCCcC
Q 036642 275 NNFQGPIPEGLQNLTSLKHLLLDSNRF 301 (938)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l 301 (938)
|.+++. ..+..+++|++|++++|.+
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcc
Confidence 444432 2333344444444444433
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.5e-16 Score=158.18 Aligned_cols=155 Identities=20% Similarity=0.295 Sum_probs=120.5
Q ss_pred cEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCc-cccCCCccCeeeccccccccccchhhhcchhhhhcccc
Q 036642 632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK-GLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSH 710 (938)
Q Consensus 632 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~ 710 (938)
+.+++++|.+ +.+|..+. .++++|++++|++++..+. .+..+++|+.|++++|.+++..|..|..+++|
T Consensus 11 ~~l~~s~~~l-~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCc-CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 5677777776 34666543 3788888888888876664 47888999999999999998888888777665
Q ss_pred ccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcc
Q 036642 711 AGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG 790 (938)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~ 790 (938)
+.|+|++|++++..|..++++++|+.|+|++|++++
T Consensus 81 --------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 81 --------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp --------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred --------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe
Confidence 788999999998888889999999999999999999
Q ss_pred cCCccccccCCCCEEECCCCcccccCCcc-ccCCCCCCeEeCcCCcccccCCC
Q 036642 791 RIPESIGAMRSLESIDFSLNQLSGEIPQS-MSSLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 791 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~ 842 (938)
.+|+.|+.+++|++|+|++|++++..+.. +. ..++...+..+...|..|.
T Consensus 117 ~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST
T ss_pred eCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCCh
Confidence 99999999999999999999999876521 11 1122234455555565564
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.2e-16 Score=167.49 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=106.0
Q ss_pred CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCc
Q 036642 140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV 219 (938)
Q Consensus 140 ~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~ 219 (938)
.+.+++.++++++.+++. + .+..+++|++|++++|.+.... .+..+++|++|++++|+++.++. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP----LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCC
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh----hccCCCCC
Confidence 456677888888888744 3 5778888888888888877553 56677777777777777766543 56667777
Q ss_pred EEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCC
Q 036642 220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN 299 (938)
Q Consensus 220 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 299 (938)
+|++++|+++++++.. . ++|++|++++|++++ ...+..+++|++|++++|++++. + .+..+++|++|++++|
T Consensus 89 ~L~L~~N~l~~l~~~~--~-~~L~~L~L~~N~l~~---~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIP--S-ACLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp EEECCSSCCSCCTTCC--C-SSCCEEECCSSCCSB---SGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred EEECCCCccCCcCccc--c-CcccEEEccCCccCC---ChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence 7777777766654322 2 666666666666654 23455566666666666665543 2 4555555555555555
Q ss_pred cCCCccchhhhcCCCCCEEEccCCcCC
Q 036642 300 RFNSSIPNWLYRFNRLESLGVSNNSLQ 326 (938)
Q Consensus 300 ~l~~~~p~~l~~l~~L~~L~L~~n~l~ 326 (938)
.+++. ..+..+++|++|++++|.+.
T Consensus 161 ~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 161 EITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cCcch--HHhccCCCCCEEeCCCCccc
Confidence 55543 34455555555555555544
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=151.53 Aligned_cols=132 Identities=23% Similarity=0.314 Sum_probs=107.5
Q ss_pred cEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccce
Q 036642 657 VVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDA 736 (938)
Q Consensus 657 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (938)
+.+++++|+++. +|..+ .++|+.|++++|.++ .+|..|.++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------------------- 56 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHL-------------------------------- 56 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence 355666666553 44433 256888888888887 667666665554
Q ss_pred eeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccC
Q 036642 737 LVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEI 816 (938)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~i 816 (938)
+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..
T Consensus 57 ------------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 57 ------------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp ------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred ------------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 78889999999877788999999999999999999888889999999999999999999777
Q ss_pred CccccCCCCCCeEeCcCCcccccCCC
Q 036642 817 PQSMSSLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 817 p~~l~~l~~L~~L~ls~N~l~g~ip~ 842 (938)
+..|..+++|++|++++|++.|.++.
T Consensus 119 ~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 119 EGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred hhhhhcCccccEEEeCCCCeecCCcC
Confidence 77899999999999999999987763
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2e-16 Score=172.27 Aligned_cols=294 Identities=15% Similarity=0.086 Sum_probs=174.7
Q ss_pred ccccCCcc--CCCCCCEEeCCCCCCCCCcccccccC-CCCCcEEecCCCcCC--CCCCcCCCCCCcccEEECCCCccccc
Q 036642 107 GKVNPSLL--DLKHLSYLDLSYNDFQGVQIPRFICS-MGNLRYLNLSYTQFV--GMIPPQLGNLSNLQYLDLSWNFLYVE 181 (938)
Q Consensus 107 g~l~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~p~~~~~L~~L~~L~Ls~n~i~~~ 181 (938)
|.++..+. .+.+++.|+++++ +....+ ..+.. +++|++|||++|++. ...+ +.++.++.+.+..| .+
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~---~I 84 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN---FV 84 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT---EE
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHH-HHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc---cc
Confidence 34444443 3667888888764 221111 22333 788999999999887 2222 22233455555555 34
Q ss_pred CccccCC--------CCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCC-
Q 036642 182 NLWWLPG--------LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQF- 252 (938)
Q Consensus 182 ~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l- 252 (938)
...+|.+ +++|+.+++.. .++.+++ .+|.++++|+.+++++|.+..+++..|.++.++..+....+..
T Consensus 85 ~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~--~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 85 PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED--AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT--TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred CHHHhcccccccccccCCCcEEECCc-cccchhH--HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 5566777 88888888888 7777654 6788888888888888888888888888888887777665321
Q ss_pred --CCccCcccccCCCCCC-EEEccCCcccCCCCccc----cCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcC
Q 036642 253 --DNSFVPNWVFGLIQLV-FLDLRRNNFQGPIPEGL----QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325 (938)
Q Consensus 253 --~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 325 (938)
...+....+.++..|+ .+++.... .++..+ ....+++.+.+.++-...........+++|+.+++++|++
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred hccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc
Confidence 0011133455566666 45444321 122211 1234555555554322111111112366777777777766
Q ss_pred CchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCcc-EEEccCCcCccccccccCCCCCccEEEccCCeecc
Q 036642 326 QGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLE-ILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG 404 (938)
Q Consensus 326 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 404 (938)
+......|.++++|+.+++..| +....+. .+..+. +|+ .+.+.+ .++...+..|.+|++|+.++++.|+++.
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~-~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCG-RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCT-TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred ceecHhhhhCCCCCCEEECCcc-cceehHH----HhhCCh-hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 6666666777777777777665 4433333 222233 455 555555 4555555667777788888877777776
Q ss_pred cccccccCCCCCcEEEc
Q 036642 405 PIPFSLGHLSTLQFIDL 421 (938)
Q Consensus 405 ~~~~~l~~l~~L~~L~L 421 (938)
..+.+|.++++|+.++.
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 66667777777777753
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=6e-16 Score=168.47 Aligned_cols=218 Identities=12% Similarity=0.043 Sum_probs=139.9
Q ss_pred CCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccc----ccccc-ccccCcCC
Q 036642 557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL----SGTIH-SLKNCTAL 631 (938)
Q Consensus 557 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~~-~l~~l~~L 631 (938)
|++|+.+++.+ .++...+.+|.+|++|+.+++++|.+....+..|.++.++..+.+..+.. ...-. .+.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 88899999988 78767777888899999999999988877788888887777777666332 11122 56667777
Q ss_pred c-EEECCCCccCCCCChhHhhh---cCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhc
Q 036642 632 L-TLDVGENEFVENIPTWIGER---FSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707 (938)
Q Consensus 632 ~-~L~Ls~N~l~~~~p~~~~~~---l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 707 (938)
+ .+++... +.++..++.. ..++..+.+.++-...........+++|+.+++++|+++...+.+|.++.+|
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L--- 252 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL--- 252 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence 6 5555443 2344433322 3445555555432111111111136677777777777764444456666555
Q ss_pred cccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCC-EEeCcCc
Q 036642 708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQ-SFNLSNN 786 (938)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~-~L~Ls~N 786 (938)
+.++|++| ++..-+..|.++++|+ .+++++
T Consensus 253 -----------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 253 -----------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp -----------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred -----------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 45666666 5533444567777777 777777
Q ss_pred cCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEe
Q 036642 787 FFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLN 830 (938)
Q Consensus 787 ~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 830 (938)
.++..-+.+|.++++|+.+++++|+++..-+..|.++++|+.++
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66655567777777777777777777766666777777777765
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3e-15 Score=145.52 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=89.4
Q ss_pred CcccEEeeCCCccc-ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhc
Q 036642 654 SRMVVLILRSNKFH-SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAML 732 (938)
Q Consensus 654 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (938)
++|+.|++++|+++ +.+|..+..+++|+.|++++|.+++. ..+..+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------- 72 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK----------------------------- 72 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS-----------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC-----------------------------
Confidence 45566666666665 45555566666666666666666543 33333333
Q ss_pred ccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccC-CccccccCCCCEEECCCCc
Q 036642 733 LEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI-PESIGAMRSLESIDFSLNQ 811 (938)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~~~~l~~L~~LdLs~N~ 811 (938)
|+.|++++|++++.+|..++.+++|+.|+|++|.+++.. +..++.+++|+.|++++|+
T Consensus 73 ---------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 73 ---------------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ---------------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred ---------------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 256777777777667776777777777777777777532 2667777788888888888
Q ss_pred ccccCC---ccccCCCCCCeEeCcCCcccccCCC
Q 036642 812 LSGEIP---QSMSSLTYLNHLNLSNNNLTGKIPS 842 (938)
Q Consensus 812 l~~~ip---~~l~~l~~L~~L~ls~N~l~g~ip~ 842 (938)
+++..+ ..+..+++|++|++++|.+. ++|.
T Consensus 132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 132 VTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp GGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 776544 46777788888888887776 3443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=7.4e-15 Score=142.75 Aligned_cols=138 Identities=20% Similarity=0.185 Sum_probs=108.2
Q ss_pred CcCCcEEECCCCccC-CCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhh
Q 036642 628 CTALLTLDVGENEFV-ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 706 (938)
Q Consensus 628 l~~L~~L~Ls~N~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 706 (938)
.++|++|++++|.+. +.+|..+. .+++|++|++++|++++. ..+..+++|+.|++++|.+++.+|..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-- 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL-- 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC--
T ss_pred cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC--
Confidence 356677777777766 55666544 678888888888887775 677888999999999999987777766666555
Q ss_pred ccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc-CchhccCccCCCEEeCcC
Q 036642 707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK-IPLEVTNLKALQSFNLSN 785 (938)
Q Consensus 707 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~ 785 (938)
+.|++++|++++. .+..++.+++|+.|++++
T Consensus 98 ------------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 98 ------------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp ------------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred ------------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence 7889999999853 227889999999999999
Q ss_pred ccCcccCC---ccccccCCCCEEECCCCcccccCCcc
Q 036642 786 NFFTGRIP---ESIGAMRSLESIDFSLNQLSGEIPQS 819 (938)
Q Consensus 786 N~l~~~ip---~~~~~l~~L~~LdLs~N~l~~~ip~~ 819 (938)
|.+++..+ ..+..+++|+.||+++|.+. .+|.+
T Consensus 130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp SGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99996655 48899999999999999987 45554
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=3.4e-15 Score=141.92 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=87.7
Q ss_pred cCcccEEeeCCCccc-ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhh
Q 036642 653 FSRMVVLILRSNKFH-SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAM 731 (938)
Q Consensus 653 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 731 (938)
.++|+.|++++|+++ +.+|..+..+++|+.|++++|.+++. ..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------------- 66 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL--------------------------- 66 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence 355666666666666 55666666677777777777776643 333333333
Q ss_pred cccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCccc-CCccccccCCCCEEECCCC
Q 036642 732 LLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGR-IPESIGAMRSLESIDFSLN 810 (938)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~LdLs~N 810 (938)
+.|++++|++++.+|..++.+++|+.|++++|.+++. .|..++.+++|++|++++|
T Consensus 67 -----------------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 67 -----------------------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp -----------------------CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred -----------------------CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 6677777777766777777777788888888877753 3467777788888888888
Q ss_pred cccccCC---ccccCCCCCCeEeCcC
Q 036642 811 QLSGEIP---QSMSSLTYLNHLNLSN 833 (938)
Q Consensus 811 ~l~~~ip---~~l~~l~~L~~L~ls~ 833 (938)
++++..+ ..+..+++|++|++++
T Consensus 124 ~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 124 EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cccchHHHHHHHHHHCCCcccccCCC
Confidence 8776555 4677777788877763
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.6e-14 Score=141.68 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=75.3
Q ss_pred eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN 834 (938)
Q Consensus 755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 834 (938)
+.|++++|++++..+..++.+++|+.|++++|++++..|..++.+++|++||+++|++++..+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 67788888888655566788999999999999999877778899999999999999999766666788999999999999
Q ss_pred cccccCCC
Q 036642 835 NLTGKIPS 842 (938)
Q Consensus 835 ~l~g~ip~ 842 (938)
+++|.+|.
T Consensus 135 ~~~~~~~~ 142 (177)
T 2o6r_A 135 PWDCSCPR 142 (177)
T ss_dssp CBCCCHHH
T ss_pred CeeccCcc
Confidence 99998874
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=9e-15 Score=138.96 Aligned_cols=129 Identities=17% Similarity=0.156 Sum_probs=99.3
Q ss_pred CcCCcEEECCCCccC-CCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhh
Q 036642 628 CTALLTLDVGENEFV-ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 706 (938)
Q Consensus 628 l~~L~~L~Ls~N~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 706 (938)
.++|+.|++++|.+. +.+|..+. .+++|++|++++|++++. ..+..+++|+.|++++|.+++.+|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-- 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL-- 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC--
T ss_pred CccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC--
Confidence 355666666666665 55665444 577777777777777765 667788889999999999887777766665555
Q ss_pred ccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc-CchhccCccCCCEEeCcC
Q 036642 707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK-IPLEVTNLKALQSFNLSN 785 (938)
Q Consensus 707 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~ 785 (938)
+.|++++|++++. .|..++.+++|+.|++++
T Consensus 91 ------------------------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 91 ------------------------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp ------------------------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred ------------------------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 7888999999863 458899999999999999
Q ss_pred ccCcccCC---ccccccCCCCEEECCC
Q 036642 786 NFFTGRIP---ESIGAMRSLESIDFSL 809 (938)
Q Consensus 786 N~l~~~ip---~~~~~l~~L~~LdLs~ 809 (938)
|.+++..+ ..++.+++|+.||+++
T Consensus 123 N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 123 CEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcccchHHHHHHHHHHCCCcccccCCC
Confidence 99997666 5789999999999874
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=137.48 Aligned_cols=109 Identities=28% Similarity=0.301 Sum_probs=56.8
Q ss_pred CCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEE
Q 036642 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR 222 (938)
Q Consensus 143 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 222 (938)
+|++|++++|+++ .+|..|.++++|++|+|++|.+....+..|.++++|++|++++|.++.++. ..+..+++|++|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~--~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP--RTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH--HHhCCCCCCCEEE
Confidence 4444444444444 333444444444444444444444444444444444444444444443321 3445556666666
Q ss_pred cCCCCCCCCCcccccCCCCCCEEECCCCCCCC
Q 036642 223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN 254 (938)
Q Consensus 223 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 254 (938)
|++|.++.+++..|..+++|+.|++++|.+..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 66666666666667777777777777776654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.2e-15 Score=152.85 Aligned_cols=153 Identities=18% Similarity=0.257 Sum_probs=110.0
Q ss_pred cCcCCcEEECCCCccCCCCCh------hHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhc
Q 036642 627 NCTALLTLDVGENEFVENIPT------WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHN 700 (938)
Q Consensus 627 ~l~~L~~L~Ls~N~l~~~~p~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 700 (938)
....++.++++.+.+.+.+|. .+. .+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 334445555555555555443 555 67888888888888877 55 7777888888888888887 56655554
Q ss_pred chhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCE
Q 036642 701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQS 780 (938)
Q Consensus 701 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~ 780 (938)
+++| +.|++++|++++ +| .++.+++|+.
T Consensus 92 ~~~L--------------------------------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 92 ADTL--------------------------------------------------EELWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp HHHC--------------------------------------------------SEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred CCcC--------------------------------------------------CEEECcCCcCCc-CC-ccccCCCCCE
Confidence 4444 678888888885 55 6888888888
Q ss_pred EeCcCccCcccCC-ccccccCCCCEEECCCCcccccCCcc----------ccCCCCCCeEeCcCCccc
Q 036642 781 FNLSNNFFTGRIP-ESIGAMRSLESIDFSLNQLSGEIPQS----------MSSLTYLNHLNLSNNNLT 837 (938)
Q Consensus 781 L~Ls~N~l~~~ip-~~~~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~ 837 (938)
|++++|++++..+ +.++.+++|++|++++|++++.+|.. +..+++|++|| +|+++
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888885332 46788888888888888888877664 77788888887 56555
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=4e-13 Score=131.67 Aligned_cols=130 Identities=21% Similarity=0.178 Sum_probs=76.6
Q ss_pred CCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCC
Q 036642 119 LSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLS 198 (938)
Q Consensus 119 L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 198 (938)
.+.++++++.++ .+|..+ .++|++|++++|++++..+..|+++++|++|++++|.+.......|.++++|++|+++
T Consensus 9 ~~~l~~~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS--SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc--cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356666666666 345433 3567777777777776655666777777777777776665555555555555555555
Q ss_pred CCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCC
Q 036642 199 YVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN 254 (938)
Q Consensus 199 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 254 (938)
+|.++.++. ..+..+++|++|++++|+++++++..+..+++|++|++++|.+.+
T Consensus 85 ~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPN--GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCH--HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 555554432 234455555555555555555555555555555555555555544
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=3.4e-12 Score=141.70 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=51.6
Q ss_pred CCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEE
Q 036642 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR 222 (938)
Q Consensus 143 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 222 (938)
+|+.+++..+ ++.....+|.++ +|+.+++.. .+..+...+|.++++|+.++++.|.++.++. ..|. ..+|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~--~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA--STFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT--TTTT-TCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech--hhEe-ecccCEEE
Confidence 4666665544 443444455553 466666553 4555555555555555555555555554433 2222 34555555
Q ss_pred cCCCCCCCCCcccccCCCCCCEEECCC
Q 036642 223 LSRCQLHHLPPLAIANFSTLTTLDLLY 249 (938)
Q Consensus 223 L~~n~i~~~~~~~l~~l~~L~~L~L~~ 249 (938)
+.. .++.+...+|.++++|+.+++..
T Consensus 210 lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 210 LPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred eCC-chheehhhHhhCCCCCCEEecCC
Confidence 542 25555555555555555555544
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.6e-13 Score=131.68 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=82.2
Q ss_pred eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642 754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN 833 (938)
Q Consensus 754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 833 (938)
++.|+|++|++++..|..++++++|+.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..+..+++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 37899999999988899999999999999999999988788889999999999999999987777899999999999999
Q ss_pred CcccccCCCC
Q 036642 834 NNLTGKIPSS 843 (938)
Q Consensus 834 N~l~g~ip~~ 843 (938)
|+++|.++..
T Consensus 112 N~~~c~c~~l 121 (170)
T 3g39_A 112 NPWDCACSDI 121 (170)
T ss_dssp SCBCTTBGGG
T ss_pred CCCCCCchhH
Confidence 9999987743
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.3e-13 Score=134.88 Aligned_cols=134 Identities=17% Similarity=0.098 Sum_probs=84.5
Q ss_pred CccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCC
Q 036642 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF 191 (938)
Q Consensus 112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~ 191 (938)
.+.+.++|++|++++|.++. +|......++|++|++++|.+++. ..++++++|++|++++|.+....+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45677788999999998884 555433344889999999888864 67888888888888888887665555566666
Q ss_pred CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcc---cccCCCCCCEEECCCC
Q 036642 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPL---AIANFSTLTTLDLLYN 250 (938)
Q Consensus 192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---~l~~l~~L~~L~L~~n 250 (938)
|++|++++|.++.++.+ ..+..+++|++|++++|.++.++.. .+..+++|++||+++|
T Consensus 90 L~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCCcCCcchhh-HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 77777666666554321 1344455555555555555443322 2333444444444433
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=3.1e-12 Score=142.03 Aligned_cols=224 Identities=11% Similarity=0.067 Sum_probs=170.8
Q ss_pred CccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCC
Q 036642 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF 191 (938)
Q Consensus 112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~ 191 (938)
.|.+ .+|+.+++..+ ++.+ -...|.++ +|+.+.+.. .+....+.+|.++++|+.+++++|++..+...+|. ..+
T Consensus 131 aF~~-~~L~~i~l~~~-i~~I-~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 131 AFRN-SQIAKVVLNEG-LKSI-GDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTT-CCCSEEECCTT-CCEE-CTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hccc-CCccEEEeCCC-ccEE-CHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 4555 47999999876 6643 23356664 799999986 66767778999999999999999999999999998 589
Q ss_pred CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEE
Q 036642 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD 271 (938)
Q Consensus 192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 271 (938)
|+.+.+..+ ++.++. .+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+.. .++.. ....|.++++|+.++
T Consensus 205 L~~l~lp~~-l~~I~~--~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I-~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGS--QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNI-ASRAFYYCPELAEVT 277 (401)
T ss_dssp CSEEECCTT-CCEECT--TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEE-CTTTTTTCTTCCEEE
T ss_pred cCEEEeCCc-hheehh--hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEE-ChhHhhCCCCCCEEE
Confidence 999999854 666654 68899999999999874 78888888888 7899999944 44432 266788888999999
Q ss_pred ccCCccc-----CCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCC
Q 036642 272 LRRNNFQ-----GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC 346 (938)
Q Consensus 272 L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 346 (938)
+.++.+. ...+.+|.+|++|+.+.+. +.++......|.++++|+.+.+..+ ++.....+|.++ +|+.+++.+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 8887664 3455677888888888887 4466566667778888888888554 555556677777 777777777
Q ss_pred CcCcc
Q 036642 347 VKLSQ 351 (938)
Q Consensus 347 n~l~~ 351 (938)
|....
T Consensus 355 n~~~~ 359 (401)
T 4fdw_A 355 TTPPQ 359 (401)
T ss_dssp SSCCB
T ss_pred CCCcc
Confidence 65543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.8e-13 Score=132.59 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=40.3
Q ss_pred eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCc--cccccCCCCEEECCCCcccccCCcc----ccCCCCCCe
Q 036642 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPE--SIGAMRSLESIDFSLNQLSGEIPQS----MSSLTYLNH 828 (938)
Q Consensus 755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L~~ 828 (938)
+.|++++|++++..|..++.+++|+.|+|++|.++ .+|. .++.+++|+.|++++|+++ .+|.. +..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 34444444444222222244555555555555553 3443 4555555555555555555 33442 555556666
Q ss_pred EeCcCCccc
Q 036642 829 LNLSNNNLT 837 (938)
Q Consensus 829 L~ls~N~l~ 837 (938)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 666655544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=1.2e-14 Score=145.41 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=120.6
Q ss_pred hccCCCcceeeccCccCCCccch------hhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccccccc
Q 036642 554 AHELKKLQFLYLRGNFLQGELTD------CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKN 627 (938)
Q Consensus 554 l~~l~~L~~L~ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~ 627 (938)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++..+..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 34566788888888888877776 88889999999999999986 66 888899999999999998854336777
Q ss_pred CcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCC-ccccCCCccCeeeccccccccccchh---------
Q 036642 628 CTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLP-KGLCDLAFLQIVDLADNNLSGEVPRC--------- 697 (938)
Q Consensus 628 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~--------- 697 (938)
+++|++|++++|++.+ +| .+. .+++|++|++++|++++..+ ..+..+++|+.|++++|++++.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 8899999999999876 55 454 68899999999999887433 57888999999999999998877653
Q ss_pred -hhcchhhhhcc
Q 036642 698 -IHNLRAMVTLN 708 (938)
Q Consensus 698 -l~~l~~L~~l~ 708 (938)
+..+++|+.++
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 66777776665
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=8.8e-13 Score=128.36 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=79.4
Q ss_pred eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642 754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN 833 (938)
Q Consensus 754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 833 (938)
++.|+|++|++++..|..++++++|+.|+|++|+|++..+..|+++++|+.|||++|+|++..|..+..+++|++|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 37889999999988888999999999999999999977667789999999999999999977666799999999999999
Q ss_pred CcccccCCC
Q 036642 834 NNLTGKIPS 842 (938)
Q Consensus 834 N~l~g~ip~ 842 (938)
|++.+.++.
T Consensus 115 N~~~c~~~~ 123 (174)
T 2r9u_A 115 NPWDCECRD 123 (174)
T ss_dssp SCBCTTBGG
T ss_pred CCccccccc
Confidence 999987663
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=2.3e-11 Score=135.74 Aligned_cols=198 Identities=11% Similarity=0.036 Sum_probs=108.0
Q ss_pred cccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCC
Q 036642 137 FICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLP 216 (938)
Q Consensus 137 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~ 216 (938)
+|.++.+|+.+.+..+ ++.+-..+|.++++|+.+++..+ +..+...+|.++.+|+.+.+..+ +..+.. .+|.++.
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~--~aF~~~~ 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV--EAFKGCD 140 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT--TTTTTCC
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc--eeeeccc
Confidence 4667777888887643 55455567778888888887654 66666677777777777666543 222221 3344443
Q ss_pred CCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEEC
Q 036642 217 SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLL 296 (938)
Q Consensus 217 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 296 (938)
.++.... ..+..+...+|.++++|+.+.+..+.. .+....+.++.+|+.+++..+ ++......+.++..|+.+.+
T Consensus 141 ~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 141 FKEITIP--EGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CSEEECC--TTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred ccccccC--ccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 3332222 223334455677777777777765432 122445566666766666554 33334455666666666665
Q ss_pred cCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCC
Q 036642 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV 347 (938)
Q Consensus 297 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 347 (938)
..+... +.........|+.+.+... +.......+..+..++.+.+..+
T Consensus 216 ~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 216 PNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred CCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 544322 2333334455666655433 22223334555555555555433
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.32 E-value=5.9e-11 Score=132.37 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=105.1
Q ss_pred cccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCC-CCCCCccccceeecccccCCCCCCcccCCCCC
Q 036642 384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMN-DNWIPPFQLATLGLRHCHLGSRFPSWLHSQKH 462 (938)
Q Consensus 384 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~ 462 (938)
..|.++++|+.+.+.++. .......|.++++|+.+++..+ ++.++ ..+.....|+.+.+..+.. .+.........
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--EeehhhcccCC
Confidence 346666777777765543 2233445666677776666554 22222 2223333444444333221 11122223344
Q ss_pred CcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCcc
Q 036642 463 LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSI 542 (938)
Q Consensus 463 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l 542 (938)
|+.+.+.... + .+....+..+..++.+.+..+...-....+..+..++.+. ...+.+
T Consensus 232 l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~---------------------~~~~~i 288 (394)
T 4fs7_A 232 VKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVI---------------------YGSVIV 288 (394)
T ss_dssp CCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEE---------------------ECSSEE
T ss_pred CceEEECCCc-e-ecccccccccccceeEEcCCCcceeeccccccccccceec---------------------cCceee
Confidence 5555443321 1 2222333344455555544443221111333333333333 333222
Q ss_pred ccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccc
Q 036642 543 SGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI 622 (938)
Q Consensus 543 ~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 622 (938)
.. ..+..+.+|+.+.+.++ ++.....+|.++.+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++..-
T Consensus 289 ~~-------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 289 PE-------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp CT-------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred cc-------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 11 12344566666666543 44344556666677777776543 55444566666777777776655 44333
Q ss_pred c-ccccCcCCcEEECCCC
Q 036642 623 H-SLKNCTALLTLDVGEN 639 (938)
Q Consensus 623 ~-~l~~l~~L~~L~Ls~N 639 (938)
. +|.+|++|+.+++..+
T Consensus 359 ~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG
T ss_pred HHHhhCCCCCCEEEECCC
Confidence 3 6677777777766544
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=2.5e-11 Score=117.61 Aligned_cols=106 Identities=29% Similarity=0.291 Sum_probs=65.5
Q ss_pred CCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCC
Q 036642 119 LSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLS 198 (938)
Q Consensus 119 L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 198 (938)
.+++++++|.++ .+|..+ .++|++|+|++|++++..|..|.++++|++|+|++|++....+..|.+
T Consensus 11 ~~~l~~s~n~l~--~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~---------- 76 (170)
T 3g39_A 11 GTTVDCSGKSLA--SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK---------- 76 (170)
T ss_dssp TTEEECTTSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT----------
T ss_pred CCEEEeCCCCcC--ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC----------
Confidence 356777777776 355544 366777777777777666777777777777777777665544433333
Q ss_pred CCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCC
Q 036642 199 YVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN 254 (938)
Q Consensus 199 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 254 (938)
+++|++|+|++|+++++++..|.++++|++|+|++|.+..
T Consensus 77 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 77 ----------------LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ----------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ----------------CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 4444444444455555555556666666666666666654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=3.4e-13 Score=148.24 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=32.8
Q ss_pred eEEEeecCccCc----cCchhccCccCCCEEeCcCccCccc----CCccccccCCCCEEECCCCcccccC
Q 036642 755 RIIDFSKNNFSG----KIPLEVTNLKALQSFNLSNNFFTGR----IPESIGAMRSLESIDFSLNQLSGEI 816 (938)
Q Consensus 755 ~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~LdLs~N~l~~~i 816 (938)
+.|||++|++++ .++..+...+.|+.|+|++|.++.. ++..+...++|++|||++|+|+..-
T Consensus 186 ~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 455555555543 1234445555666666666666532 2333344456666666666665443
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=4.1e-11 Score=116.49 Aligned_cols=58 Identities=22% Similarity=0.195 Sum_probs=29.0
Q ss_pred CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCccccc
Q 036642 120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE 181 (938)
Q Consensus 120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~ 181 (938)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++..+
T Consensus 15 ~~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i 72 (174)
T 2r9u_A 15 TLVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72 (174)
T ss_dssp SEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cEEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc
Confidence 34555555554 2444332 4555555555555555555555555555555555544433
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=3.7e-11 Score=131.73 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=55.8
Q ss_pred eEEEeec-CccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642 755 RIIDFSK-NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN 833 (938)
Q Consensus 755 ~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 833 (938)
+.|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |++|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 5566664 666655556666667777777777777766666666777777777777777655445555554 67777777
Q ss_pred CcccccCC
Q 036642 834 NNLTGKIP 841 (938)
Q Consensus 834 N~l~g~ip 841 (938)
|++.+.++
T Consensus 113 N~~~c~c~ 120 (347)
T 2ifg_A 113 NPLHCSCA 120 (347)
T ss_dssp SCCCCCGG
T ss_pred CCccCCCc
Confidence 77666544
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=3.1e-12 Score=140.56 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=8.3
Q ss_pred CCCCEEeCCCCCCCC
Q 036642 190 SFLKDLDLSYVNLSK 204 (938)
Q Consensus 190 ~~L~~L~Ls~n~l~~ 204 (938)
+.|+.|++++|.++.
T Consensus 72 ~~L~~L~Ls~n~l~~ 86 (372)
T 3un9_A 72 SSLRQLNLAGVRMTP 86 (372)
T ss_dssp TTCCEEECTTSCCCH
T ss_pred hhCCEEEecCCCCCH
Confidence 445566666655543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=2.5e-10 Score=125.10 Aligned_cols=95 Identities=25% Similarity=0.247 Sum_probs=80.7
Q ss_pred cccCCccCCCCCCEEeCCC-CCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642 108 KVNPSLLDLKHLSYLDLSY-NDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL 186 (938)
Q Consensus 108 ~l~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~ 186 (938)
.+|. +..+++|++|+|++ |.++++ .+..|+++++|++|+|++|++++..|..|++|++|++|+|++|++....+..|
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 4788 88999999999996 999864 45678999999999999999999888899999999999999999988777777
Q ss_pred CCCCCCCEEeCCCCCCCCC
Q 036642 187 PGLSFLKDLDLSYVNLSKA 205 (938)
Q Consensus 187 ~~l~~L~~L~Ls~n~l~~~ 205 (938)
..++ |+.|++.+|.+...
T Consensus 101 ~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 101 QGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSCC-CCEEECCSSCCCCC
T ss_pred ccCC-ceEEEeeCCCccCC
Confidence 7666 88888888877653
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.3e-08 Score=113.34 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=53.9
Q ss_pred CCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCc---ccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCc
Q 036642 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF---LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV 219 (938)
Q Consensus 143 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~ 219 (938)
.|+.+.+..+ ++.+-..+|.++++|+.+.+..|. +..+...+|.++.+|+.+.+..+ ++.++. ..|..+.+|+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~--~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS--EAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT--TTTTTCTTCC
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh--hhhhhhcccc
Confidence 3566655443 343445566666666666665542 44555556666666665554332 222221 3445555566
Q ss_pred EEEcCCCCCCCCCcccccCCCCCCEEECCCC
Q 036642 220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYN 250 (938)
Q Consensus 220 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n 250 (938)
.+.+.. .+..+....|.++..|+.+.+..+
T Consensus 141 ~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 141 TVTIPE-GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccc-eeeeecccceecccccccccccce
Confidence 655542 344444555666666666665443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.04 E-value=6.8e-09 Score=115.62 Aligned_cols=159 Identities=10% Similarity=0.001 Sum_probs=91.3
Q ss_pred CCCCCcCCCCCC-cccEEECCCCcccccCccccCCCCCCCEEeCCCCC---CCCCcchhhhhCCCCCCcEEEcCCCCCCC
Q 036642 155 VGMIPPQLGNLS-NLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVN---LSKASDWLRVTNTLPSLVKLRLSRCQLHH 230 (938)
Q Consensus 155 ~~~~p~~~~~L~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 230 (938)
+.+-..+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++.++. .+|..+.+|+.+.+..+ ++.
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~--~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR--QAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT--TTTTTCTTCCBCGGGTT-CSE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEech--hhchhcccceeeccCCc-cce
Confidence 334456788874 5999999754 777888889999999988887664 333333 45667777777666543 556
Q ss_pred CCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhh
Q 036642 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLY 310 (938)
Q Consensus 231 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 310 (938)
+....|.++.+|+.+.+..+.. .+....+..+..|+.+.+..+ ++.....+|. ...|+.+.+..+.. ......+.
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~ 202 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFS 202 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTT
T ss_pred ehhhhhhhhcccccccccceee--eecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhh
Confidence 6666777777777777754321 111344555666666666543 2222222332 24555555543321 12233344
Q ss_pred cCCCCCEEEccC
Q 036642 311 RFNRLESLGVSN 322 (938)
Q Consensus 311 ~l~~L~~L~L~~ 322 (938)
.+..++......
T Consensus 203 ~c~~l~~~~~~~ 214 (394)
T 4gt6_A 203 ECFALSTITSDS 214 (394)
T ss_dssp TCTTCCEEEECC
T ss_pred hccccceecccc
Confidence 444554444433
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=4e-09 Score=114.61 Aligned_cols=80 Identities=15% Similarity=0.304 Sum_probs=41.9
Q ss_pred eeEEEeecCccCccCchhc---cCccCCCEEeCcCccCccc----CCccccccCCCCEEECCCCcccccCCccccC-CCC
Q 036642 754 VRIIDFSKNNFSGKIPLEV---TNLKALQSFNLSNNFFTGR----IPESIGAMRSLESIDFSLNQLSGEIPQSMSS-LTY 825 (938)
Q Consensus 754 l~~L~Ls~N~l~g~ip~~l---~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-l~~ 825 (938)
|+.|+|++|.+.+..+..+ +.+++|+.|+|+.|.+++. ++..+..+++|+.|||++|.++...-..+.. +
T Consensus 254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-- 331 (362)
T 2ra8_A 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-- 331 (362)
T ss_dssp CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--
T ss_pred cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--
Confidence 3445555554443222222 2356666667766666653 3444455677777777777666443222332 2
Q ss_pred CCeEeCcCCc
Q 036642 826 LNHLNLSNNN 835 (938)
Q Consensus 826 L~~L~ls~N~ 835 (938)
...+++++++
T Consensus 332 g~~~~~~~~~ 341 (362)
T 2ra8_A 332 PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSBC
T ss_pred CCEEEecCCc
Confidence 2446666665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=9.2e-09 Score=111.77 Aligned_cols=186 Identities=13% Similarity=0.151 Sum_probs=104.1
Q ss_pred hccCCCcceeeccCccCC---------CccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-
Q 036642 554 AHELKKLQFLYLRGNFLQ---------GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH- 623 (938)
Q Consensus 554 l~~l~~L~~L~ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~- 623 (938)
...+++|+.|.+.+.... +.+...+..+++|+.|++++|.-. .++. + .+++|++|+|..|.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 445667777777554321 124445566677777777766311 2222 3 26677777777766654322
Q ss_pred cc--ccCcCCcEEECCC--CccCCCCChhHhhhcCcccEEeeCCCcccccCCccc--cCCCccCeeeccccccccccchh
Q 036642 624 SL--KNCTALLTLDVGE--NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGL--CDLAFLQIVDLADNNLSGEVPRC 697 (938)
Q Consensus 624 ~l--~~l~~L~~L~Ls~--N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~N~l~~~~p~~ 697 (938)
.+ ..+++|+.|+|+. |...+... +.. +...+ ..+++|+.|++++|.+.+..+..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~-------------------~~~-l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGD-------------------MNV-FRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSC-------------------GGG-TGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred HHHHccCCCCcEEEEeccccccccchh-------------------HHH-HHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 22 2456666666542 11111000 000 00111 24677888888888776544433
Q ss_pred hhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc----Cchhcc
Q 036642 698 IHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK----IPLEVT 773 (938)
Q Consensus 698 l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~----ip~~l~ 773 (938)
+..... ++.|+.|||+.|.+.+. ++..+.
T Consensus 272 la~a~~-----------------------------------------------~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 272 FLESDI-----------------------------------------------LPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp HHHCSS-----------------------------------------------GGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred HHhCcc-----------------------------------------------CCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 322111 23457888888888763 455556
Q ss_pred CccCCCEEeCcCccCcccCCccccc-cCCCCEEECCCCc
Q 036642 774 NLKALQSFNLSNNFFTGRIPESIGA-MRSLESIDFSLNQ 811 (938)
Q Consensus 774 ~l~~L~~L~Ls~N~l~~~ip~~~~~-l~~L~~LdLs~N~ 811 (938)
.+++|+.|+|++|.++...-..+.. + ...+|++.++
T Consensus 305 ~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7889999999999887544333443 2 4678998887
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.65 E-value=1.4e-06 Score=96.38 Aligned_cols=288 Identities=10% Similarity=0.060 Sum_probs=137.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCC
Q 036642 113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFL 192 (938)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L 192 (938)
+..-.+|+.+.+.. .++.+ -..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +..+...+|... +|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred cccccCCEEEEeCC-CccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 33445566666643 23321 1235667777777777644 444455667666 5666666533 555555666654 67
Q ss_pred CEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCc-----------cCcccc
Q 036642 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS-----------FVPNWV 261 (938)
Q Consensus 193 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------~~~~~~ 261 (938)
+.+.+..+ +..+.. ..|.+. +++...+.. .++.+....|..+..++.+.+..+..... .....+
T Consensus 116 ~~i~lp~~-~~~i~~--~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 116 DDFEFPGA-TTEIGN--YIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp SEEECCTT-CCEECT--TTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred ccccCCCc-cccccc--cccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 77777643 222211 233333 455555443 35555556677777777776655432210 001122
Q ss_pred cCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCe
Q 036642 262 FGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341 (938)
Q Consensus 262 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 341 (938)
.....+....+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......|.++.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 333444444443322 1123334455566666666443 22233444556666666666554 44444455556666666
Q ss_pred eecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEc
Q 036642 342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDL 421 (938)
Q Consensus 342 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 421 (938)
+.+..+ +...... .+..+. +|+.+.+.++.++......|.++.+|+.+++..+ ++.....+|.+|++|+.+.+
T Consensus 268 i~l~~~-i~~i~~~----aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 268 LNFYAK-VKTVPYL----LCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCC-CSEECTT----TTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccc-ceecccc----cccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 655432 2111111 111122 4444444444444333444444444444444332 22222334444444444444
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.57 E-value=2.3e-06 Score=94.56 Aligned_cols=127 Identities=21% Similarity=0.275 Sum_probs=58.8
Q ss_pred hhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCc
Q 036642 577 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSR 655 (938)
Q Consensus 577 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~ 655 (938)
++..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++..-. .+.++.+|+.+++..+ ...++...+.++++
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence 3444444555544333 22233344445555555555443 222222 4555555555555433 12233333334555
Q ss_pred ccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhcc
Q 036642 656 MVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708 (938)
Q Consensus 656 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 708 (938)
|+.+.+.++.++.+-...|.++++|+.++|..+ ++..-..+|.+|.+|+.+.
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 555555555555544555555566666655433 3322233555555555443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1.5e-07 Score=92.13 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=30.9
Q ss_pred CCcEEEccCC-ccccccchhhhhhhccCCCcceeeccCccCCCc----cchhhhcCCCCCEEEcCCCccc
Q 036642 531 NLIELDFSNN-SISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFT 595 (938)
Q Consensus 531 ~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 595 (938)
+|++|++++| .+.......++..+...++|++|++++|.+... +...+...++|++|+|++|.+.
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 4444555554 444433344444445555555555555555432 2223333445555555555544
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=1.4e-07 Score=96.96 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=44.3
Q ss_pred ccceeEEEeecCccCc--cCchhccCccCCCEEeCcCccCcccCCccccccC--CCCEEECCCCcccccCCc-------c
Q 036642 751 LNLVRIIDFSKNNFSG--KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMR--SLESIDFSLNQLSGEIPQ-------S 819 (938)
Q Consensus 751 ~~~l~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~--~L~~LdLs~N~l~~~ip~-------~ 819 (938)
++.|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. +.+..++ +|++|+|++|++++.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3445666666666665 4445555666666666666666643 2344444 666666666666655542 2
Q ss_pred ccCCCCCCeEe
Q 036642 820 MSSLTYLNHLN 830 (938)
Q Consensus 820 l~~l~~L~~L~ 830 (938)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=2.5e-07 Score=95.02 Aligned_cols=84 Identities=26% Similarity=0.338 Sum_probs=67.0
Q ss_pred EEeecCccC---ccCchhccCccCCCEEeCcCccCcc--cCCccccccCCCCEEECCCCcccccCCccccCCC--CCCeE
Q 036642 757 IDFSKNNFS---GKIPLEVTNLKALQSFNLSNNFFTG--RIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT--YLNHL 829 (938)
Q Consensus 757 L~Ls~N~l~---g~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L 829 (938)
++++.|+.. +.++....+++.|+.|+|++|+|++ .+|..++.+++|+.|||++|+|++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 567777443 2223333578999999999999998 6678889999999999999999975 3455555 89999
Q ss_pred eCcCCcccccCCC
Q 036642 830 NLSNNNLTGKIPS 842 (938)
Q Consensus 830 ~ls~N~l~g~ip~ 842 (938)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998874
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.21 E-value=1.3e-06 Score=85.38 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=70.8
Q ss_pred CccccCCCCCCEEECcCC-cCCCc----cchhhhcCCCCCEEEccCCcCCchhh----HhhhccCCCCeeecCCCcCccc
Q 036642 282 PEGLQNLTSLKHLLLDSN-RFNSS----IPNWLYRFNRLESLGVSNNSLQGRVI----RSMASLCNLRSVMLSCVKLSQE 352 (938)
Q Consensus 282 p~~l~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~ 352 (938)
...+...++|++|+|++| .+... +...+...++|++|+|++|.+..... ..+...+.|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344566777888888887 66542 33344556777777777777765432 3344456677777777766654
Q ss_pred hhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEc--cCCeeccc----ccccccCCCCCcEEEccCccC
Q 036642 353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDL--SNNSIVGP----IPFSLGHLSTLQFIDLSYNEL 426 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l 426 (938)
....+. ..+...+.|++|+| ++|.+... +...+...++|++|+|++|.+
T Consensus 109 g~~~l~-------------------------~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALV-------------------------EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHH-------------------------HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHH-------------------------HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 333222 22344455666666 55666533 223444556677777776665
Q ss_pred C
Q 036642 427 N 427 (938)
Q Consensus 427 ~ 427 (938)
.
T Consensus 164 ~ 164 (185)
T 1io0_A 164 G 164 (185)
T ss_dssp H
T ss_pred C
Confidence 4
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=1.4e-05 Score=75.87 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCc-CCCccchhhhcC----CCCCEEEccCCc-CCchhhHhhhccCC
Q 036642 265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNR-FNSSIPNWLYRF----NRLESLGVSNNS-LQGRVIRSMASLCN 338 (938)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 338 (938)
.+|+.||+++|.++..--..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. ++......+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777665544556777788888888874 555444445553 368888888874 77777777888888
Q ss_pred CCeeecCCCcC
Q 036642 339 LRSVMLSCVKL 349 (938)
Q Consensus 339 L~~L~L~~n~l 349 (938)
|+.|+++++.-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 88888888753
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.62 E-value=1.5e-05 Score=75.68 Aligned_cols=35 Identities=6% Similarity=0.060 Sum_probs=21.3
Q ss_pred CCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCC
Q 036642 142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWN 176 (938)
Q Consensus 142 ~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n 176 (938)
.+|++||+++|.++..--..+.++++|++|+|++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 45677777776665444444556666666666665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.25 E-value=0.0002 Score=69.22 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCCcEEEccCC-ccccccchhhhhhhccCCCcceeeccCccCCCc----cchhhhcCCCCCEEEcCCCccc
Q 036642 530 SNLIELDFSNN-SISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFT 595 (938)
Q Consensus 530 ~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 595 (938)
+.|++|++++| .|.......++..+..-+.|+.|+|++|++... +.+.+..-+.|++|+|++|.|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34555666553 555544455566666666677777777666532 2233344456666666666665
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.94 E-value=0.0013 Score=59.38 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=19.9
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccC
Q 036642 801 SLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKI 840 (938)
Q Consensus 801 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 840 (938)
+|+.|||++|+|+..-+..|..+++|++|+|++|++.+.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 3445555555555433444455555555555555555433
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.68 E-value=0.0034 Score=60.67 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=18.5
Q ss_pred cCCCCCEEEccCCcCCchh----hHhhhccCCCCeeecCCCcCccc
Q 036642 311 RFNRLESLGVSNNSLQGRV----IRSMASLCNLRSVMLSCVKLSQE 352 (938)
Q Consensus 311 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~ 352 (938)
.-+.|+.|+|++|.+.... .+.+..-+.|+.|+|+.|.+...
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 3344555555555444322 22233344455555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.65 E-value=0.0025 Score=57.50 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=49.7
Q ss_pred eEEEeecCccC-ccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccc
Q 036642 755 RIIDFSKNNFS-GKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG 814 (938)
Q Consensus 755 ~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~ 814 (938)
..+|.+++.++ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47899999997 46886554 469999999999997777889999999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.11 E-value=37 Score=28.17 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=18.7
Q ss_pred CCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCC
Q 036642 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLS 198 (938)
Q Consensus 158 ~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 198 (938)
-...|.++++|+.+.+..+ ++.+...+|.++.+|+.+.+.
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3344555555555555432 333444444444444444443
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=33.60 E-value=16 Score=25.12 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhhhccc
Q 036642 896 GFMGGFWCLIGPLLASRR 913 (938)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~ 913 (938)
|.++.+++++++.+|.||
T Consensus 20 Gv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 20 ALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 333333333333444443
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.69 E-value=56 Score=27.04 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=19.6
Q ss_pred cchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccc
Q 036642 574 LTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 615 (938)
Q Consensus 574 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 615 (938)
-..+|.+|++|+.+.|-.+ ++.+-..+|.+|.+|+.+.+.+
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3445555555555555433 2223334455555555554443
No 168
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.17 E-value=18 Score=24.83 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=3.5
Q ss_pred HHhhhhccc
Q 036642 905 IGPLLASRR 913 (938)
Q Consensus 905 ~~~~~~~~~ 913 (938)
.++.+|.||
T Consensus 28 ~~~~~~~RR 36 (44)
T 2l2t_A 28 LTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 333344443
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.20 E-value=43 Score=22.16 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=6.5
Q ss_pred eehhHHHHHHHHHH
Q 036642 891 VSIALGFMGGFWCL 904 (938)
Q Consensus 891 ~~~~~~~~~~~~~~ 904 (938)
.++++|.++++.++
T Consensus 14 AGiVvG~v~gv~li 27 (38)
T 2k1k_A 14 VAVIFGLLLGAALL 27 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 44445555444433
No 170
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=21.17 E-value=46 Score=21.01 Aligned_cols=21 Identities=29% Similarity=0.342 Sum_probs=12.7
Q ss_pred ehhHHHHHHHHHHHHhhhhcc
Q 036642 892 SIALGFMGGFWCLIGPLLASR 912 (938)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~ 912 (938)
.+++|.+++|.++-.-+.|+|
T Consensus 11 t~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCceeEEEc
Confidence 455667766666656555644
Done!