BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036644
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GAE|A Chain A, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
pdb|4GAE|B Chain B, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
Length = 426
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 25 GGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEHI 75
GG +NL++ D LK + + + +P MG KI +DS++M+ ++IE H
Sbjct: 209 GGPFQNLTM---DELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEVIETHF 259
>pdb|3AU8|A Chain A, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU8|B Chain B, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU9|A Chain A, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AU9|B Chain B, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AUA|A Chain A, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
pdb|3AUA|B Chain B, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
Length = 488
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 25 GGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEHI 75
GG +NL++ D LK + + + +P MG KI +DS++M+ ++IE H
Sbjct: 271 GGPFQNLTM---DELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEVIETHF 321
>pdb|1R0K|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|C Chain C, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|D Chain D, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0L|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
Length = 388
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 13 QDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+D R + +A GG + SL ++ + N MG KI +DS++M+ ++IE
Sbjct: 165 RDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIE 224
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 16/69 (23%)
Query: 39 LKFLAVL----HQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKL 94
L +LA++ + V NP Y R+ +T +KII H+ R++E + K
Sbjct: 269 LMYLAIVLSHTNSVVNPFIYAYRIREFR--QTFRKIIRSHVLRQQEPF----------KA 316
Query: 95 CQAENIEFE 103
AEN+ F+
Sbjct: 317 AAAENLYFQ 325
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNP 51
CE V V+++ +RD + G N+ H + AVLH + +P
Sbjct: 86 CEHVDVVENLARDRAKALFGAEFANVQ-PHSGAQANAAVLHALMSP 130
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 31 LSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEI-- 88
S HG ++ V+H ++P + D + +R + ++EE + EE E+
Sbjct: 211 FSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTP 270
Query: 89 ----EQISKLCQAENIEFEIEVRPGVSLKTVAVRVAK 121
I+ E ++ +E PG + A RV +
Sbjct: 271 VFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVE 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,216,075
Number of Sequences: 62578
Number of extensions: 101643
Number of successful extensions: 375
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 9
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)