BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036644
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6VGU6|RPOH_METM7 DNA-directed RNA polymerase subunit H OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rpoH PE=3 SV=1
Length = 78
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 56 IRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLK 113
+++ S +MV T++ I E I E+Y N++++Q+ KL + + E+E PG LK
Sbjct: 1 MKVSSHAMVPTHEIIPREEIPLLLEKY--NIKLQQLPKLLDTDPLVLEVEAAPGDVLK 56
>sp|Q8F146|DXR_LEPIN 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=dxr PE=3 SV=2
Length = 389
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81
+A GG ++L ++ S+ LH MG KI +DS+ M+ ++IE H
Sbjct: 172 TASGGAFRDLPVEQLSSVTKEQALHHPTWNMGPKITIDSNGMINKGLEVIEAH------- 224
Query: 82 YQTNVEIEQISKLCQAENIEFEI-EVRPGVSL 112
+ NV ++I + ++I I E++ G S
Sbjct: 225 FLFNVPYDKIGVVIHPQSIAHGIVELKDGASF 256
>sp|Q72U08|DXR_LEPIC 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=dxr PE=3 SV=1
Length = 389
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81
+A GG ++L ++ S+ LH MG KI +DS+ M+ ++IE H
Sbjct: 172 TASGGAFRDLPVEQLSSVTKEQALHHPTWNMGPKITIDSNGMINKGLEVIEAH------- 224
Query: 82 YQTNVEIEQISKLCQAENIEFEI-EVRPGVSL 112
+ NV ++I + ++I I E++ G S
Sbjct: 225 FLFNVPYDKIGVVIHPQSIAHGIVELKDGASF 256
>sp|B1HQZ7|DXR_LYSSC 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Lysinibacillus
sphaericus (strain C3-41) GN=dxr PE=3 SV=1
Length = 381
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEHI 75
+A GG ++ K D LK + V +N+P MG KI +DS++M+ ++IE H+
Sbjct: 170 TASGGSFRD---KTRDQLKHVTVADALNHPNWSMGAKITIDSATMMNKGLEVIEAHV 223
>sp|B0SM60|DXR_LEPBP 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leptospira
biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 /
Paris) GN=dxr PE=3 SV=1
Length = 386
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 17 RDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEE 73
R + +A GG + L L ++L+ ++V +N+P MG KI +DS+ ++ ++IE
Sbjct: 165 RAITLTASGGSFRTLPL---EALEHVSVKQALNHPTWSMGPKITVDSAGLINKGLEVIEA 221
Query: 74 HI 75
H
Sbjct: 222 HF 223
>sp|B0SDN1|DXR_LEPBA 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leptospira
biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dxr
PE=3 SV=1
Length = 386
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 17 RDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEE 73
R + +A GG + L L ++L+ ++V +N+P MG KI +DS+ ++ ++IE
Sbjct: 165 RAITLTASGGSFRTLPL---EALEHVSVKQALNHPTWSMGPKITVDSAGLINKGLEVIEA 221
Query: 74 HI 75
H
Sbjct: 222 HF 223
>sp|Q66H52|IPIL1_RAT Inositol 1,4,5-trisphosphate receptor-interacting protein-like 1
OS=Rattus norvegicus GN=Itpripl1 PE=2 SV=1
Length = 547
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 38 SLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLCQ- 96
SL FLAV++ V++P+ R+D ++ R+ Q +E+ +S +E Q +E E+ S+ +
Sbjct: 5 SLLFLAVMYVVHHPLMVSDRMDLDTLARSRQ--LEKRMS--EEMRQLEIEFEERSRAAEE 60
Query: 97 ---AEN 99
AEN
Sbjct: 61 KQKAEN 66
>sp|Q053M9|DXR_LEPBL 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550) GN=dxr
PE=3 SV=1
Length = 389
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 13 QDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+D+ + +A GG ++LS++ + LH MG KI +DS+ M+ ++IE
Sbjct: 163 RDSVEKIVLTASGGSFRDLSVEQLAYVTKEQALHHPTWNMGPKITVDSNGMINKGLEVIE 222
Query: 73 EHISRKKEEYQTNVEIEQISKLCQAENIEFEI-EVRPGVSL 112
H + V E+I + ++I I E++ G S
Sbjct: 223 AH-------FLFGVPYERIGVVIHPQSIAHGIVELKDGASF 256
>sp|Q04U66|DXR_LEPBJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=dxr PE=3 SV=1
Length = 389
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 13 QDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+D+ + +A GG ++LS++ + LH MG KI +DS+ M+ ++IE
Sbjct: 163 RDSVEKIVLTASGGSFRDLSVEQLAYVTKEQALHHPTWNMGPKITVDSNGMINKGLEVIE 222
Query: 73 EHISRKKEEYQTNVEIEQISKLCQAENIEFEI-EVRPGVSL 112
H + V E+I + ++I I E++ G S
Sbjct: 223 AH-------FLFGVPYERIGVVIHPQSIAHGIVELKDGASF 256
>sp|A2ASA8|IPIL1_MOUSE Inositol 1,4,5-trisphosphate receptor-interacting protein-like 1
OS=Mus musculus GN=Itpripl1 PE=2 SV=2
Length = 547
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 38 SLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLC-Q 96
SL FLAV++ V++P+ R+D ++ R+ Q +E+ +S +E Q +E E+ S+ Q
Sbjct: 5 SLMFLAVMYVVHHPLMVSDRMDLDTLARSRQ--LEKRMS--EEMRQLEMEFEERSRAAEQ 60
Query: 97 AENIE 101
+ +E
Sbjct: 61 KQKVE 65
>sp|A4FWF9|RPOH_METM5 DNA-directed RNA polymerase subunit H OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rpoH PE=3 SV=1
Length = 78
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 56 IRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLK 113
+++ S MV T++ I E I E+Y +++++Q+ KL + + E+E PG LK
Sbjct: 1 MKVSSHEMVPTHEIIPREEIPLLLEKY--DIKLQQLPKLLDTDPLVLEVEATPGDVLK 56
>sp|A7Z4S6|DXR_BACA2 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus
amyloliquefaciens (strain FZB42) GN=dxr PE=3 SV=1
Length = 383
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81
+A GG ++ + + +S+ L+ N MG KI +DS++M+ ++IE H
Sbjct: 172 TASGGSFRDKTRQELESVTIADALNHPNWSMGAKITIDSATMMNKGLEVIEAH------- 224
Query: 82 YQTNVEIEQISKLCQAENI 100
+ ++ EQI + E+I
Sbjct: 225 WLFDIPYEQIDVVLHKESI 243
>sp|Q9XES0|DXR_MENPI 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic
OS=Mentha piperita GN=DXR PE=2 SV=2
Length = 470
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 13 QDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+ A R + +A GG ++L ++ +K L N MG KI +DS+++ ++IE
Sbjct: 238 EGALRRIILTASGGAFRDLPVEKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIE 297
Query: 73 EH 74
H
Sbjct: 298 AH 299
>sp|Q4FM64|DXR_PELUB 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelagibacter
ubique (strain HTCC1062) GN=dxr PE=3 SV=1
Length = 388
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+A GG +NLSLK ++ L N MG KI +DS++M+ +IIE
Sbjct: 173 TASGGPFRNLSLKKFRNISVKDALKHPNWSMGKKITIDSATMMNKVFEIIE 223
>sp|A9KMX2|DXR_CLOPH 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=dxr PE=3 SV=1
Length = 388
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEH 74
+A GG + SL ++K L N MG KI +DS++MV +++E H
Sbjct: 171 TASGGPFRGKSLAELKNVKVEDALKHPNWSMGRKITIDSATMVNKGLEVMEAH 223
>sp|Q39W82|DXR_GEOMG 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=dxr PE=3 SV=1
Length = 384
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIE 72
+A GG NL L D L ++V +N+P MG KI +DS++M+ ++IE
Sbjct: 172 TASGGPFLNLPL---DRLSRVSVADALNHPNWSMGQKITIDSATMMNKGLEVIE 222
>sp|B9M5C0|DXR_GEOSF 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sp.
(strain FRC-32) GN=dxr PE=3 SV=1
Length = 384
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIE 72
+A GG NLS G+ L + V +N+P MG KI +DS+SM+ ++IE
Sbjct: 172 TASGGPFLNLS---GEKLAQVTVKDALNHPNWSMGQKITIDSASMMNKGLEVIE 222
>sp|Q8R622|DXR_FUSNN 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=dxr PE=3 SV=2
Length = 387
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEH 74
+A GG + L + +++ L N MG KI +DSS++V ++IE H
Sbjct: 172 TASGGTFRGKDLAYLENVTVEQALKHPNWSMGKKITIDSSTLVNKGLEVIEAH 224
>sp|C0ZF60|DXR_BREBN 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Brevibacillus
brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxr PE=3
SV=1
Length = 382
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81
+A GG ++LS + + + L N MG KI +DS++M+ ++IE H
Sbjct: 173 TASGGSFRHLSREDLEQVTVEQALAHPNWSMGAKITIDSATMMNKGFEVIEAH------- 225
Query: 82 YQTNVEIEQISKLCQAENI 100
+ ++ EQI + E+I
Sbjct: 226 WLFDLPYEQIECVLHYESI 244
>sp|B8FR31|DXR_DESHD 1-deoxy-D-xylulose 5-phosphate reductoisomerase
OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=dxr PE=3 SV=1
Length = 381
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81
+A GG + S + + L N MG KI +DS++M+ ++IE H
Sbjct: 171 TASGGPFRGWSEEQLREVTPERALQHPNWAMGAKITIDSATMMNKGLEVIEAH------- 223
Query: 82 YQTNVEIEQISKLCQAENI 100
+ N+E +QI L +++
Sbjct: 224 HLFNMEYDQIDVLIHPQSV 242
>sp|Q97I58|DXR_CLOAB 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=dxr PE=3 SV=1
Length = 385
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 17 RDVNS---SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKI 70
+D+N +A GG + S D L + + +N+P MG KI +DS++++ ++
Sbjct: 166 KDINKILLTASGGPFRGKSF---DELNNVTLNDALNHPKWTMGRKITIDSATLMNKGLEV 222
Query: 71 IEEHISRKKEEYQTNVEIEQISKLCQAENI 100
IE H + NV+ E+I L ++I
Sbjct: 223 IEAH-------WLFNVDYEKIQVLVHPQSI 245
>sp|B7K5G6|DXR_CYAP8 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp.
(strain PCC 8801) GN=dxr PE=3 SV=1
Length = 398
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 17 RDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEE 73
R + +A GG ++ ++ LKF+ V + +P MG KI +DS++++ ++IE
Sbjct: 169 RRIILTASGGAFRDWPVEQ---LKFVTVEDAIKHPNWSMGRKITVDSATLMNKGLEVIEA 225
Query: 74 HISRKKEEYQTNVEIEQISKLCQAENI 100
H Y +E ++I + ++I
Sbjct: 226 H-------YLFGLEYDKIDIVIHPQSI 245
>sp|B9L7Q2|DXR_NAUPA 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nautilia
profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)
GN=dxr PE=3 SV=1
Length = 366
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+A GG L++ SL+ VL N MG KI +DS++MV +++E
Sbjct: 160 TASGGALRDWSLEDIKKATLKDVLKHPNWSMGVKITIDSATMVNKLFELLE 210
>sp|Q1MRD4|DXR_LAWIP 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=dxr PE=3 SV=1
Length = 402
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEH 74
+A GG +N K + LK + +N+P MG KI +DS++M+ +IIE H
Sbjct: 190 TASGGPFRN---KKYEFLKNVTPEQAINHPNWKMGTKISVDSATMINKGLEIIEAH 242
>sp|O31753|DXR_BACSU 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus
subtilis (strain 168) GN=dxr PE=3 SV=2
Length = 383
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81
+A GG ++ + + +S+ L N MG KI +DS++M+ ++IE H
Sbjct: 172 TASGGSFRDKTREELESVTVEDALKHPNWSMGAKITIDSATMMNKGLEVIEAH------- 224
Query: 82 YQTNVEIEQISKLCQAENI 100
+ ++ EQI + E+I
Sbjct: 225 WLFDIPYEQIDVVLHKESI 243
>sp|Q9KA69|DXR_BACHD 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=dxr PE=3 SV=2
Length = 382
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81
+A GG ++ S + + L N MG KI +DS++M+ ++IE H
Sbjct: 171 TASGGSFRDKSRDELNGVTVEDALKHPNWSMGAKITIDSATMMNKGLEVIEAH------- 223
Query: 82 YQTNVEIEQISKLCQAENI 100
+ N+ E+I L E+I
Sbjct: 224 WLFNLPYEKIDVLLHKESI 242
>sp|Q2JXQ9|DXR_SYNJA 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus
sp. (strain JA-3-3Ab) GN=dxr PE=3 SV=1
Length = 392
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 17 RDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEH 74
R + +A GG ++ + D + L N MG KI +DS++++ ++IE H
Sbjct: 169 RRILLTASGGAFRDWPAEKLDQVTLADALKHPNWVMGRKITIDSATLMNKGLEVIEAH 226
>sp|Q55663|DXR_SYNY3 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=dxr PE=3 SV=1
Length = 394
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 17 RDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEE 73
R + +A GG ++L + + L F+ V + +P MG KI +DS++++ ++IE
Sbjct: 171 RRIILTASGGAFRDLPV---ERLPFVTVQDALKHPNWSMGQKITIDSATLMNKGLEVIEA 227
Query: 74 H 74
H
Sbjct: 228 H 228
>sp|Q65JJ3|DXR_BACLD 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus
licheniformis (strain DSM 13 / ATCC 14580) GN=dxr PE=3
SV=1
Length = 383
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81
+A GG ++ + + + + L+ N MG KI +DS++M+ ++IE H
Sbjct: 172 TASGGSFRDRTRRELEGVTVEEALNHPNWSMGAKITIDSATMMNKGLEVIEAH------- 224
Query: 82 YQTNVEIEQISKLCQAENI 100
+ ++ +QI L E+I
Sbjct: 225 WLFDLPYDQIDVLLHKESI 243
>sp|A8FDB9|DXR_BACP2 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus pumilus
(strain SAFR-032) GN=dxr PE=3 SV=1
Length = 383
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEHISRK 78
+A GG ++ K L+ + V +N+P MG KI +DS++M+ ++IE H
Sbjct: 172 TASGGSFRD---KKRTELEGVTVEEALNHPNWSMGAKITIDSATMMNKGLEVIEAH---- 224
Query: 79 KEEYQTNVEIEQISKLCQAENI 100
+ ++ EQI L E+I
Sbjct: 225 ---WLFDIPYEQIDVLLHKESI 243
>sp|Q2JM39|DXR_SYNJB 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus
sp. (strain JA-2-3B'a(2-13)) GN=dxr PE=3 SV=1
Length = 392
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 17 RDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEH 74
R + +A GG ++ + D + L N MG KI +DS++++ ++IE H
Sbjct: 169 RRILLTASGGAFRDWPAEKLDQVTLADALKHPNWVMGRKITIDSATLMNKGLEVIEAH 226
>sp|Q74BW4|DXR_GEOSL 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=dxr PE=3 SV=1
Length = 386
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIE 72
+A GG NL L D L +++ +N+P MG KI +DS++M+ ++IE
Sbjct: 172 TASGGPFLNLPL---DQLSRVSIDDALNHPNWSMGRKITIDSATMMNKGLEVIE 222
>sp|Q8A684|DXR_BACTN 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=dxr PE=3 SV=1
Length = 390
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+A GG + +L+ S+ L N MG KI +DS+SM+ ++IE
Sbjct: 180 TASGGPFRTCTLEQLKSVTKTQALKHPNWEMGAKITIDSASMMNKGFEVIE 230
>sp|Q7V6J8|DXR_PROMM 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus
marinus (strain MIT 9313) GN=dxr PE=3 SV=1
Length = 412
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 17 RDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHIS 76
R + +A GG ++ S K + N MG KI +DS++++ ++IE H
Sbjct: 182 RHIQLTASGGAFRDWSAKDLEKATIADATSHPNWSMGRKITVDSATLMNKGLEVIEAH-- 239
Query: 77 RKKEEYQTNVEIEQISKLCQAENI 100
Y ++ QI + ++I
Sbjct: 240 -----YLFGIDYNQIEIVIHPQSI 258
>sp|C4ZA70|DXR_EUBR3 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium
rectale (strain ATCC 33656 / VPI 0990) GN=dxr PE=3 SV=1
Length = 380
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81
+A GG + L + ++ L N MG KI +DSS+MV ++IE +
Sbjct: 171 TASGGPFRGRKLSELEGIRVEDALKHPNWSMGQKITIDSSTMVNKGLEVIE-------AK 223
Query: 82 YQTNVEIEQISKLCQAENI 100
+ +V++ QI + +++
Sbjct: 224 WLFDVDLSQIQVVVHPQSV 242
>sp|B7KAT5|DXR_CYAP7 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp.
(strain PCC 7424) GN=dxr PE=3 SV=1
Length = 398
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 17 RDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEH 74
R + +A GG ++L ++ ++ L N MG KI +DS++++ ++IE H
Sbjct: 169 RKILLTASGGSFRDLPVEKLSTVTVQDALKHPNWSMGRKITIDSATLMNKGLEVIEAH 226
>sp|B0JWW6|DXR_MICAN 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Microcystis
aeruginosa (strain NIES-843) GN=dxr PE=3 SV=1
Length = 390
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEH 74
+A GG ++L ++ + L N MG KI +DS++++ ++IE H
Sbjct: 174 TASGGAFRDLPVEKLPQVTVADALKHPNWSMGRKITIDSATLMNKGLEVIEAH 226
>sp|O96693|DXR_PLAFX 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
OS=Plasmodium falciparum (isolate HB3) GN=DXR PE=1 SV=1
Length = 488
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 25 GGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEHI 75
GG +NL++ D LK + + + +P MG KI +DS++M+ ++IE H
Sbjct: 271 GGPFQNLTM---DELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEVIETHF 321
>sp|Q8IKG4|DXR_PLAF7 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
OS=Plasmodium falciparum (isolate 3D7) GN=DXR PE=3 SV=1
Length = 488
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 25 GGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEHI 75
GG +NL++ D LK + + + +P MG KI +DS++M+ ++IE H
Sbjct: 271 GGPFQNLTM---DELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEVIETHF 321
>sp|B3CN89|DXR_WOLPP 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Wolbachia
pipientis subsp. Culex pipiens (strain wPip) GN=dxr PE=3
SV=1
Length = 391
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEH 74
+A GG N SL+ L+ + V +++P MG KI +DS++M+ +IIE H
Sbjct: 171 TASGGPFLNYSLEQ---LRNITVNQALSHPTWKMGKKISVDSATMMNKALEIIEAH 223
>sp|Q5WLV4|HSLO_BACSK 33 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=hslO
PE=3 SV=1
Length = 295
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 1 MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDS 60
M +E C+R AS + + +GG L LK D L V Q N P+G +I +D+
Sbjct: 25 MVKEACKRQGTWPTASAALGRTMMGGALMASMLKGKDK---LTVRIQGNGPIG-EIIVDA 80
Query: 61 SSMVRTNQKIIEEHIS 76
+ T + H+S
Sbjct: 81 HASGATRGTVTNPHVS 96
>sp|Q9XFS9|DXR_ARATH 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic
OS=Arabidopsis thaliana GN=DXR PE=2 SV=2
Length = 477
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 13 QDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+ A R + +A GG ++ ++ +K L N MG KI +DS+++ ++IE
Sbjct: 244 EGALRKIILTASGGAFRDWPVEKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIE 303
Query: 73 EH 74
H
Sbjct: 304 AH 305
>sp|B4SAR7|DXR_PELPB 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelodictyon
phaeoclathratiforme (strain DSM 5477 / BU-1) GN=dxr PE=3
SV=1
Length = 382
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEH 74
+A GG +N S + LK + + + +P MG KI +DS++M+ ++IE H
Sbjct: 172 TASGGPFRNTS---AEELKNVTLEQALKHPQWTMGAKITIDSATMMNKGLEVIEAH 224
>sp|Q07NI7|DXR_RHOP5 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopseudomonas
palustris (strain BisA53) GN=dxr PE=3 SV=1
Length = 407
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEH 74
+A GG + + + L N MG KI +DS+SM+ ++IE H
Sbjct: 186 TASGGPFRTWAAADIEQATLAQALKHPNWSMGQKITIDSASMMNKGLEVIEAH 238
>sp|B1WNP5|DXR_CYAA5 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp.
(strain ATCC 51142) GN=dxr PE=3 SV=1
Length = 398
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEHI 75
+A GG ++ ++ LK++ V + +P MG KI +DS++++ ++IE H
Sbjct: 174 TASGGAFRDWPVEQ---LKYVTVQDALKHPNWSMGQKITVDSATLMNKGLEVIEAHF 227
>sp|Q8W250|DXR_ORYSJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic
OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2
Length = 473
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 13 QDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+ A R + +A GG ++ + +K L N MG KI +DS+++ ++IE
Sbjct: 240 EGALRRIILTASGGAFRDWPVDKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIE 299
Query: 73 EH 74
H
Sbjct: 300 AH 301
>sp|Q3YRZ5|DXR_EHRCJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia canis
(strain Jake) GN=dxr PE=3 SV=1
Length = 387
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEH 74
+A GG L LS+ + + +K++ V V +P MG KI +DS++M+ + +IIE +
Sbjct: 172 TASGGPL--LSMDY-EQMKYVTVQDTVKHPVWKMGKKISVDSATMINKSLEIIEAY 224
>sp|Q5GTA4|DXR_WOLTR 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=dxr PE=3 SV=1
Length = 389
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVLHQVNNP---MGYKIRLDSSSMVRTNQKIIEEH 74
+A GG N SL + L+ + V +++P MG KI +DS++M+ +IIE H
Sbjct: 171 TASGGSFLNYSL---EQLRNVTVGQALSHPTWNMGKKISVDSATMMNKALEIIEAH 223
>sp|Q8DT49|DNLJ_STRMU DNA ligase OS=Streptococcus mutans serotype c (strain ATCC 700610 /
UA159) GN=ligA PE=3 SV=1
Length = 652
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 43 AVLHQVNNPMGYKIRLDSSSMVRTNQKIIEE--HISRKKEEYQTNVEIEQISKLCQAENI 100
A LH V+ IR+ +V II H+ K + Q + I + CQ+E I
Sbjct: 344 ATLHNVDYIAEKDIRIGDIVVVYKAGDIIPAVLHVVENKRDQQVPLPIPTVCPSCQSELI 403
Query: 101 EFEIEVRPGVSLKTVAVRVAKKFK 124
FE E V+L+ V R + K
Sbjct: 404 HFEDE----VALRCVNPRCPAQLK 423
>sp|B0BB58|DXR_CHLTB 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlamydia
trachomatis serovar L2b (strain UCH-1/proctitis) GN=dxr
PE=3 SV=1
Length = 379
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 22 SAIGGILKNLSLKHGDSLKFLAVL-HQVNNPMGYKIRLDSSSMVRTNQKIIE 72
+A GG L+N S + + VL H V N MG KI +DSS++V +IIE
Sbjct: 171 TASGGPLRNKSKEELQKVSLQEVLRHPVWN-MGPKITVDSSTLVNKGLEIIE 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,286,565
Number of Sequences: 539616
Number of extensions: 1358221
Number of successful extensions: 5788
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 5730
Number of HSP's gapped (non-prelim): 104
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)