Query 036644
Match_columns 131
No_of_seqs 102 out of 223
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:07:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 99.7 5.7E-16 1.2E-20 108.3 13.1 109 8-130 1-109 (146)
2 PRK15005 universal stress prot 99.4 2E-12 4.4E-17 89.9 11.3 109 7-130 3-113 (144)
3 PRK15456 universal stress prot 99.4 2.1E-12 4.5E-17 90.2 10.7 108 7-130 3-111 (142)
4 PRK09982 universal stress prot 99.4 4.1E-12 8.8E-17 89.2 11.4 106 7-130 4-109 (142)
5 PRK15118 universal stress glob 99.4 4.5E-12 9.7E-17 88.5 10.7 106 6-130 3-109 (144)
6 PRK12652 putative monovalent c 99.3 1.3E-10 2.8E-15 93.5 12.7 100 6-131 5-120 (357)
7 cd01987 USP_OKCHK USP domain i 99.2 1.8E-10 3.9E-15 78.3 10.7 91 8-130 1-91 (124)
8 PRK10116 universal stress prot 99.2 3.7E-10 7.9E-15 78.4 11.3 105 6-130 3-108 (142)
9 cd01988 Na_H_Antiporter_C The 99.2 1.1E-09 2.3E-14 74.5 11.6 100 8-130 1-100 (132)
10 PF00582 Usp: Universal stress 99.1 1.2E-09 2.7E-14 73.4 11.1 106 7-130 3-108 (140)
11 PRK11175 universal stress prot 99.1 8.6E-10 1.9E-14 85.5 11.6 110 7-130 4-113 (305)
12 cd00293 USP_Like Usp: Universa 99.1 5.9E-09 1.3E-13 69.5 11.6 99 8-130 1-99 (130)
13 PRK11175 universal stress prot 98.6 4.4E-07 9.6E-12 70.3 10.7 108 6-130 152-267 (305)
14 COG0589 UspA Universal stress 98.6 3E-06 6.5E-11 58.3 12.6 113 6-130 5-119 (154)
15 PRK10490 sensor protein KdpD; 97.3 0.0041 9E-08 55.7 11.5 93 6-130 250-342 (895)
16 TIGR02432 lysidine_TilS_N tRNA 94.3 0.64 1.4E-05 33.5 9.2 36 8-45 1-36 (189)
17 COG2205 KdpD Osmosensitive K+ 94.2 0.64 1.4E-05 41.7 10.3 93 6-130 248-340 (890)
18 PRK08745 ribulose-phosphate 3- 94.2 1 2.2E-05 34.2 10.2 89 6-130 110-198 (223)
19 PRK14057 epimerase; Provisiona 93.3 2.2 4.9E-05 33.1 10.9 87 8-130 134-220 (254)
20 PRK09722 allulose-6-phosphate 92.7 3 6.4E-05 31.9 10.7 89 6-130 108-196 (229)
21 PRK08091 ribulose-phosphate 3- 92.7 2.8 6.1E-05 32.0 10.6 87 8-130 120-206 (228)
22 COG0036 Rpe Pentose-5-phosphat 92.6 2.5 5.4E-05 32.2 10.0 87 7-130 110-196 (220)
23 PF01171 ATP_bind_3: PP-loop f 92.4 3.1 6.6E-05 30.0 10.3 89 8-130 1-102 (182)
24 cd01992 PP-ATPase N-terminal d 91.8 2.8 6E-05 29.9 9.2 89 8-130 1-102 (185)
25 PRK08005 epimerase; Validated 89.3 5.6 0.00012 30.0 9.2 33 6-45 106-138 (210)
26 PF00834 Ribul_P_3_epim: Ribul 83.8 3.5 7.6E-05 30.8 5.5 89 6-130 105-193 (201)
27 cd01984 AANH_like Adenine nucl 83.3 1.5 3.2E-05 27.4 2.9 33 9-44 1-33 (86)
28 PRK08883 ribulose-phosphate 3- 83.1 18 0.00038 27.3 10.1 88 7-130 107-194 (220)
29 PLN02285 methionyl-tRNA formyl 82.0 9.5 0.00021 30.6 7.7 94 6-130 6-99 (334)
30 KOG2882 p-Nitrophenyl phosphat 80.8 9.3 0.0002 30.5 7.1 111 6-126 154-264 (306)
31 COG0075 Serine-pyruvate aminot 79.2 3.9 8.5E-05 33.6 4.7 31 10-44 58-88 (383)
32 COG2104 ThiS Sulfur transfer p 76.7 5.4 0.00012 24.7 3.7 35 6-45 31-65 (68)
33 cd01463 vWA_VGCC_like VWA Volt 73.9 9 0.00019 27.6 5.0 39 5-45 12-57 (190)
34 PRK10696 tRNA 2-thiocytidine b 73.4 38 0.00083 25.8 9.3 38 6-45 29-68 (258)
35 COG1168 MalY Bifunctional PLP- 67.7 15 0.00032 30.3 5.3 79 20-103 92-195 (388)
36 TIGR00591 phr2 photolyase PhrI 65.6 59 0.0013 26.9 8.7 41 88-131 80-120 (454)
37 PF13167 GTP-bdg_N: GTP-bindin 65.2 37 0.0008 22.4 6.1 44 88-131 10-64 (95)
38 PRK10660 tilS tRNA(Ile)-lysidi 63.7 74 0.0016 26.5 8.9 39 6-46 15-54 (436)
39 PF00763 THF_DHG_CYH: Tetrahyd 62.8 13 0.00028 25.1 3.6 37 90-126 49-85 (117)
40 TIGR02765 crypto_DASH cryptoch 61.7 19 0.00042 29.5 5.1 41 88-131 63-103 (429)
41 PF00731 AIRC: AIR carboxylase 58.7 60 0.0013 23.2 6.5 42 88-129 16-60 (150)
42 PLN03159 cation/H(+) antiporte 57.3 1.5E+02 0.0033 26.9 11.6 116 5-130 457-576 (832)
43 PRK07440 hypothetical protein; 56.5 19 0.00042 22.1 3.3 35 6-45 33-67 (70)
44 cd01993 Alpha_ANH_like_II This 55.7 68 0.0015 22.4 8.9 37 8-46 1-39 (185)
45 cd05569 PTS_IIB_fructose PTS_I 55.7 24 0.00052 22.9 3.8 40 90-130 20-59 (96)
46 PRK05863 sulfur carrier protei 54.3 33 0.00071 20.6 4.1 34 6-45 29-62 (65)
47 TIGR00736 nifR3_rel_arch TIM-b 54.2 52 0.0011 25.1 6.0 35 97-131 132-168 (231)
48 PRK05265 pyridoxine 5'-phospha 53.5 43 0.00093 25.9 5.4 39 88-130 115-153 (239)
49 COG3864 Uncharacterized protei 53.3 25 0.00054 28.6 4.2 46 7-52 262-310 (396)
50 PRK06437 hypothetical protein; 53.1 20 0.00044 21.8 3.0 31 6-45 34-64 (67)
51 TIGR03556 photolyase_8HDF deox 52.7 40 0.00087 28.2 5.6 41 88-131 57-97 (471)
52 PF00448 SRP54: SRP54-type pro 52.3 21 0.00045 26.3 3.5 43 88-131 45-90 (196)
53 TIGR02855 spore_yabG sporulati 52.0 62 0.0013 25.7 6.1 43 87-130 116-159 (283)
54 PF00875 DNA_photolyase: DNA p 51.1 38 0.00082 23.7 4.6 41 88-131 55-95 (165)
55 PLN02331 phosphoribosylglycina 49.9 55 0.0012 24.5 5.5 41 90-130 40-84 (207)
56 COG0299 PurN Folate-dependent 49.8 47 0.001 25.0 4.9 40 91-130 42-85 (200)
57 PF05582 Peptidase_U57: YabG p 49.4 59 0.0013 25.8 5.7 43 87-130 117-160 (287)
58 COG4841 Uncharacterized protei 48.7 23 0.0005 23.3 2.8 28 18-45 4-31 (95)
59 PRK07696 sulfur carrier protei 48.7 32 0.00069 20.8 3.4 35 6-45 30-64 (67)
60 cd01456 vWA_ywmD_type VWA ywmD 48.3 47 0.001 24.1 4.8 39 5-45 19-70 (206)
61 PF08021 FAD_binding_9: Sidero 48.1 19 0.00042 24.3 2.5 20 22-44 94-113 (117)
62 COG0552 FtsY Signal recognitio 48.1 42 0.00091 27.3 4.8 43 88-131 183-228 (340)
63 KOG1577 Aldo/keto reductase fa 47.2 35 0.00075 27.3 4.1 39 88-126 190-235 (300)
64 COG0037 MesJ tRNA(Ile)-lysidin 46.8 1.3E+02 0.0028 23.0 10.0 36 7-46 22-57 (298)
65 COG1535 EntB Isochorismate hyd 45.8 40 0.00087 25.3 4.0 22 88-109 60-81 (218)
66 PRK06083 sulfur carrier protei 44.9 40 0.00086 21.6 3.5 35 6-45 47-81 (84)
67 cd08170 GlyDH Glycerol dehydro 43.6 87 0.0019 24.9 6.1 40 90-129 40-82 (351)
68 TIGR00177 molyb_syn molybdenum 43.3 81 0.0017 21.8 5.2 38 92-130 33-72 (144)
69 KOG2862 Alanine-glyoxylate ami 43.0 75 0.0016 26.0 5.4 30 12-45 72-101 (385)
70 KOG0023 Alcohol dehydrogenase, 42.7 58 0.0013 26.6 4.8 72 18-109 256-331 (360)
71 PRK08053 sulfur carrier protei 42.6 46 0.001 19.9 3.4 35 6-45 29-63 (66)
72 cd01461 vWA_interalpha_trypsin 42.5 71 0.0015 21.8 4.9 37 6-44 2-45 (171)
73 PF09967 DUF2201: VWA-like dom 42.5 42 0.0009 22.9 3.5 38 9-46 1-41 (126)
74 TIGR01162 purE phosphoribosyla 42.5 1.1E+02 0.0024 22.0 5.8 42 88-129 14-58 (156)
75 PF03129 HGTP_anticodon: Antic 42.5 68 0.0015 19.9 4.4 39 90-130 20-58 (94)
76 PRK05659 sulfur carrier protei 42.3 61 0.0013 19.1 3.9 35 6-45 29-63 (66)
77 PF01261 AP_endonuc_2: Xylose 40.4 1.3E+02 0.0028 21.1 6.1 43 88-130 29-90 (213)
78 PLN02331 phosphoribosylglycina 40.1 78 0.0017 23.7 4.9 18 9-27 2-19 (207)
79 cd00886 MogA_MoaB MogA_MoaB fa 40.1 93 0.002 21.7 5.1 39 91-130 25-67 (152)
80 PRK14170 bifunctional 5,10-met 39.9 70 0.0015 25.3 4.8 38 90-127 51-88 (284)
81 TIGR03884 sel_bind_Methan sele 39.8 79 0.0017 20.0 4.1 25 105-129 20-47 (74)
82 PRK14191 bifunctional 5,10-met 39.5 72 0.0016 25.3 4.8 37 90-126 51-87 (285)
83 PRK14184 bifunctional 5,10-met 39.2 74 0.0016 25.2 4.9 37 90-126 51-87 (286)
84 smart00852 MoCF_biosynth Proba 39.2 1.2E+02 0.0026 20.4 5.6 40 90-130 22-63 (135)
85 COG0041 PurE Phosphoribosylcar 39.1 1E+02 0.0022 22.4 5.1 42 88-129 18-62 (162)
86 PRK14175 bifunctional 5,10-met 38.7 76 0.0016 25.1 4.9 37 90-126 52-88 (286)
87 PRK14173 bifunctional 5,10-met 38.6 74 0.0016 25.2 4.8 37 90-126 49-85 (287)
88 PF01645 Glu_synthase: Conserv 38.5 1.1E+02 0.0024 25.1 5.9 33 98-131 202-234 (368)
89 PRK14178 bifunctional 5,10-met 38.5 76 0.0016 25.0 4.8 38 90-127 46-83 (279)
90 PF02844 GARS_N: Phosphoribosy 38.3 24 0.00052 23.5 1.7 20 7-29 1-20 (100)
91 PF14124 DUF4291: Domain of un 38.2 28 0.0006 25.8 2.2 21 7-31 64-84 (181)
92 PRK09423 gldA glycerol dehydro 38.0 1.2E+02 0.0026 24.3 6.1 40 90-129 47-89 (366)
93 TIGR03788 marine_srt_targ mari 37.7 65 0.0014 27.7 4.7 38 6-45 271-315 (596)
94 PF01791 DeoC: DeoC/LacD famil 37.6 61 0.0013 24.2 4.1 41 87-128 113-163 (236)
95 PRK14171 bifunctional 5,10-met 37.5 84 0.0018 24.9 5.0 38 90-127 52-89 (288)
96 COG0588 GpmA Phosphoglycerate 37.5 22 0.00048 27.2 1.6 24 6-32 174-197 (230)
97 PF02639 DUF188: Uncharacteriz 37.2 52 0.0011 22.9 3.4 27 9-40 30-56 (130)
98 PF07521 RMMBL: RNA-metabolisi 36.9 50 0.0011 18.1 2.7 29 12-44 11-40 (43)
99 PRK14181 bifunctional 5,10-met 36.9 84 0.0018 24.9 4.8 38 90-127 46-83 (287)
100 PRK06488 sulfur carrier protei 36.8 66 0.0014 19.0 3.4 35 6-45 28-62 (65)
101 PRK14176 bifunctional 5,10-met 36.8 84 0.0018 24.9 4.8 37 90-126 58-94 (287)
102 cd00565 ThiS ThiaminS ubiquiti 36.8 59 0.0013 19.2 3.2 35 6-45 28-62 (65)
103 PRK14177 bifunctional 5,10-met 36.5 83 0.0018 24.9 4.8 37 90-126 53-89 (284)
104 cd06278 PBP1_LacI_like_2 Ligan 36.5 97 0.0021 22.4 5.0 14 117-130 70-83 (266)
105 cd00986 PDZ_LON_protease PDZ d 36.5 80 0.0017 19.0 3.9 31 9-41 30-60 (79)
106 PRK14189 bifunctional 5,10-met 36.3 90 0.0019 24.7 4.9 37 90-126 52-88 (285)
107 PRK14193 bifunctional 5,10-met 36.2 86 0.0019 24.8 4.8 38 90-127 52-89 (284)
108 PRK14182 bifunctional 5,10-met 35.9 91 0.002 24.7 4.9 37 90-126 50-86 (282)
109 cd01466 vWA_C3HC4_type VWA C3H 35.9 99 0.0021 21.3 4.7 34 9-44 3-43 (155)
110 COG1240 ChlD Mg-chelatase subu 35.9 49 0.0011 25.9 3.3 37 7-45 79-124 (261)
111 PF03740 PdxJ: Pyridoxal phosp 35.8 91 0.002 24.1 4.8 39 88-130 113-151 (239)
112 PF00994 MoCF_biosynth: Probab 35.8 1.2E+02 0.0026 20.7 5.1 40 90-130 21-62 (144)
113 PRK14190 bifunctional 5,10-met 35.8 89 0.0019 24.7 4.8 37 90-126 52-88 (284)
114 cd00003 PNPsynthase Pyridoxine 35.7 87 0.0019 24.2 4.6 39 88-130 112-150 (234)
115 PRK14166 bifunctional 5,10-met 35.5 90 0.002 24.7 4.8 37 90-126 50-86 (282)
116 PRK14183 bifunctional 5,10-met 35.5 89 0.0019 24.7 4.8 37 90-126 51-87 (281)
117 PRK07482 hypothetical protein; 35.3 78 0.0017 26.4 4.7 47 84-130 239-287 (461)
118 PRK03673 hypothetical protein; 34.9 1.1E+02 0.0024 25.3 5.4 39 91-130 26-66 (396)
119 cd00858 GlyRS_anticodon GlyRS 34.7 1.1E+02 0.0024 20.3 4.7 36 92-130 48-83 (121)
120 TIGR00268 conserved hypothetic 34.7 2E+02 0.0044 21.7 8.1 34 6-45 12-45 (252)
121 PF04989 CmcI: Cephalosporin h 34.6 46 0.001 25.1 2.9 34 6-41 110-145 (206)
122 PRK09590 celB cellobiose phosp 34.5 78 0.0017 21.0 3.8 38 89-130 19-56 (104)
123 PRK14174 bifunctional 5,10-met 34.4 95 0.0021 24.7 4.8 38 90-127 51-88 (295)
124 TIGR01949 AroFGH_arch predicte 34.3 1.4E+02 0.003 22.7 5.7 42 88-129 125-174 (258)
125 cd00754 MoaD Ubiquitin domain 33.8 56 0.0012 19.7 2.9 29 6-43 47-75 (80)
126 PRK14194 bifunctional 5,10-met 33.5 1E+02 0.0023 24.5 4.9 38 90-127 53-90 (301)
127 PRK10792 bifunctional 5,10-met 33.5 1E+02 0.0022 24.4 4.8 37 90-126 53-89 (285)
128 COG0541 Ffh Signal recognition 33.2 82 0.0018 26.6 4.4 44 87-131 143-189 (451)
129 PRK14167 bifunctional 5,10-met 33.2 1E+02 0.0022 24.5 4.8 38 90-127 51-88 (297)
130 PRK03670 competence damage-ind 32.9 1.3E+02 0.0029 23.1 5.3 39 91-130 25-66 (252)
131 PRK06938 diaminobutyrate--2-ox 32.8 1E+02 0.0023 25.7 5.1 46 85-130 251-298 (464)
132 PRK14172 bifunctional 5,10-met 32.8 1E+02 0.0023 24.2 4.8 37 90-126 52-88 (278)
133 PF09861 DUF2088: Domain of un 32.8 85 0.0018 23.4 4.1 39 6-45 54-97 (204)
134 PRK05965 hypothetical protein; 32.8 85 0.0018 26.1 4.5 47 84-130 234-282 (459)
135 PRK14185 bifunctional 5,10-met 32.6 1E+02 0.0023 24.5 4.8 37 90-126 51-87 (293)
136 cd02067 B12-binding B12 bindin 32.6 1.4E+02 0.0031 19.4 4.9 38 91-130 19-56 (119)
137 TIGR01683 thiS thiamine biosyn 32.2 81 0.0018 18.6 3.3 35 6-45 27-61 (64)
138 cd06286 PBP1_CcpB_like Ligand- 32.1 1.7E+02 0.0036 21.2 5.7 41 90-130 20-61 (260)
139 PRK14187 bifunctional 5,10-met 32.1 1.1E+02 0.0024 24.3 4.8 38 90-127 52-89 (294)
140 PRK14168 bifunctional 5,10-met 32.0 1.1E+02 0.0024 24.3 4.8 38 90-127 53-90 (297)
141 cd08550 GlyDH-like Glycerol_de 31.9 1.6E+02 0.0034 23.4 5.8 40 90-129 40-82 (349)
142 COG0492 TrxB Thioredoxin reduc 31.8 53 0.0012 26.0 3.1 25 20-46 152-176 (305)
143 TIGR00559 pdxJ pyridoxine 5'-p 31.7 1.1E+02 0.0024 23.6 4.6 38 88-129 112-149 (237)
144 PF13180 PDZ_2: PDZ domain; PD 31.7 90 0.0019 19.0 3.6 34 8-43 36-69 (82)
145 TIGR03156 GTP_HflX GTP-binding 31.5 2E+02 0.0044 23.1 6.4 44 88-131 19-73 (351)
146 PF00135 COesterase: Carboxyle 31.4 37 0.00079 27.9 2.1 24 21-44 190-215 (535)
147 PRK04013 argD acetylornithine/ 31.3 92 0.002 25.1 4.4 45 86-130 183-228 (364)
148 COG2102 Predicted ATPases of P 31.2 2.4E+02 0.0052 21.6 11.3 41 88-130 101-141 (223)
149 COG0538 Icd Isocitrate dehydro 30.9 33 0.00071 28.4 1.7 27 14-44 194-220 (407)
150 cd00885 cinA Competence-damage 30.9 1.9E+02 0.0042 20.7 5.6 39 91-130 24-64 (170)
151 KOG0256 1-aminocyclopropane-1- 30.8 2.2E+02 0.0048 24.1 6.5 33 19-53 208-240 (471)
152 PRK14169 bifunctional 5,10-met 30.7 1.2E+02 0.0026 23.9 4.8 37 90-126 50-86 (282)
153 PLN02897 tetrahydrofolate dehy 30.7 1.2E+02 0.0025 24.8 4.8 40 87-126 103-142 (345)
154 PRK14186 bifunctional 5,10-met 30.6 1.2E+02 0.0026 24.1 4.8 38 90-127 52-89 (297)
155 cd00758 MoCF_BD MoCF_BD: molyb 30.6 1.7E+02 0.0037 19.8 5.1 39 91-130 24-64 (133)
156 PLN02516 methylenetetrahydrofo 30.5 1.2E+02 0.0026 24.2 4.8 37 90-126 59-95 (299)
157 PRK14179 bifunctional 5,10-met 30.5 1.2E+02 0.0026 23.9 4.8 37 90-126 52-88 (284)
158 COG1454 EutG Alcohol dehydroge 30.5 1.4E+02 0.0031 24.6 5.4 42 88-129 46-91 (377)
159 PRK14180 bifunctional 5,10-met 30.4 1.2E+02 0.0027 23.9 4.8 37 90-126 51-87 (282)
160 PF02887 PK_C: Pyruvate kinase 30.4 73 0.0016 21.1 3.2 27 19-45 76-102 (117)
161 PF02878 PGM_PMM_I: Phosphoglu 30.4 83 0.0018 21.4 3.5 39 6-46 40-78 (137)
162 COG2405 Predicted nucleic acid 30.3 59 0.0013 23.4 2.7 16 116-131 79-94 (157)
163 cd00991 PDZ_archaeal_metallopr 30.2 1.1E+02 0.0025 18.5 3.9 32 8-41 32-63 (79)
164 cd00861 ProRS_anticodon_short 30.2 1.3E+02 0.0029 18.4 4.3 36 93-130 25-60 (94)
165 PF10672 Methyltrans_SAM: S-ad 30.0 46 0.001 26.3 2.4 19 10-32 149-167 (286)
166 cd06322 PBP1_ABC_sugar_binding 29.9 1.6E+02 0.0034 21.5 5.2 14 90-103 20-33 (267)
167 PRK14188 bifunctional 5,10-met 29.8 1.3E+02 0.0028 23.9 4.9 37 90-126 52-88 (296)
168 PF12971 NAGLU_N: Alpha-N-acet 29.6 19 0.00042 23.0 0.2 21 21-41 55-79 (86)
169 PF12847 Methyltransf_18: Meth 29.6 66 0.0014 20.3 2.8 31 10-44 28-59 (112)
170 TIGR00486 YbgI_SA1388 dinuclea 29.6 75 0.0016 24.2 3.5 20 6-29 36-55 (249)
171 cd06295 PBP1_CelR Ligand bindi 29.5 1.9E+02 0.004 21.2 5.6 14 117-130 80-93 (275)
172 COG2262 HflX GTPases [General 29.4 1.2E+02 0.0025 25.5 4.7 42 88-131 22-76 (411)
173 PRK10558 alpha-dehydro-beta-de 29.3 1.7E+02 0.0037 22.5 5.4 38 91-131 10-47 (256)
174 TIGR00829 FRU PTS system, fruc 29.3 93 0.002 19.8 3.4 40 90-130 19-58 (85)
175 cd01451 vWA_Magnesium_chelatas 29.2 1.2E+02 0.0025 21.4 4.2 35 9-44 3-45 (178)
176 PRK10474 putative PTS system f 29.1 86 0.0019 20.0 3.2 40 90-130 5-44 (88)
177 PF07553 Lipoprotein_Ltp: Host 29.1 9.4 0.0002 22.0 -1.2 14 18-31 35-48 (48)
178 cd06270 PBP1_GalS_like Ligand 28.9 2E+02 0.0043 21.0 5.6 14 117-130 71-84 (268)
179 TIGR00639 PurN phosphoribosylg 28.9 2.2E+02 0.0047 20.9 5.7 41 90-130 41-85 (190)
180 PF02597 ThiS: ThiS family; I 28.8 35 0.00076 20.5 1.3 32 7-44 42-73 (77)
181 PRK01215 competence damage-ind 28.7 1.6E+02 0.0035 22.8 5.2 39 91-130 28-68 (264)
182 PRK06944 sulfur carrier protei 28.6 73 0.0016 18.6 2.6 34 7-45 29-62 (65)
183 PRK10867 signal recognition pa 28.6 1E+02 0.0022 25.8 4.3 43 88-131 145-190 (433)
184 cd01453 vWA_transcription_fact 28.3 79 0.0017 22.8 3.3 37 6-44 3-54 (183)
185 COG0299 PurN Folate-dependent 28.3 2.2E+02 0.0047 21.5 5.5 42 90-131 16-57 (200)
186 TIGR01656 Histidinol-ppas hist 28.2 1.2E+02 0.0026 20.7 4.1 40 90-131 106-145 (147)
187 cd00198 vWFA Von Willebrand fa 28.2 1.4E+02 0.003 19.3 4.3 36 8-44 2-46 (161)
188 TIGR00111 pelota probable tran 28.2 54 0.0012 26.5 2.6 20 26-46 26-45 (351)
189 PRK06943 adenosylmethionine--8 28.1 1E+02 0.0022 25.7 4.2 47 84-130 241-289 (453)
190 TIGR02667 moaB_proteo molybden 27.9 2E+02 0.0042 20.5 5.2 39 91-130 27-69 (163)
191 PF02606 LpxK: Tetraacyldisacc 27.9 74 0.0016 25.5 3.3 28 104-131 108-135 (326)
192 cd06282 PBP1_GntR_like_2 Ligan 27.5 2E+02 0.0043 20.8 5.4 15 116-130 71-85 (266)
193 COG0269 SgbH 3-hexulose-6-phos 27.5 2.8E+02 0.006 21.2 6.1 43 87-130 94-136 (217)
194 PRK08364 sulfur carrier protei 27.3 89 0.0019 18.9 2.9 31 6-45 37-67 (70)
195 cd06292 PBP1_LacI_like_10 Liga 27.3 2.3E+02 0.0051 20.6 5.8 14 90-103 20-33 (273)
196 PRK10416 signal recognition pa 27.2 1.4E+02 0.0029 23.8 4.6 43 88-131 158-203 (318)
197 KOG3217 Protein tyrosine phosp 27.1 2.5E+02 0.0053 20.3 5.6 34 10-46 89-122 (159)
198 cd06309 PBP1_YtfQ_like Peripla 26.9 1.7E+02 0.0037 21.5 5.0 15 116-130 72-86 (273)
199 PRK12858 tagatose 1,6-diphosph 26.8 3.4E+02 0.0075 21.9 8.5 19 88-106 145-163 (340)
200 PRK00005 fmt methionyl-tRNA fo 26.8 1.3E+02 0.0028 23.7 4.4 38 90-130 47-84 (309)
201 PF01976 DUF116: Protein of un 26.7 2.1E+02 0.0045 20.5 5.1 37 88-129 75-111 (158)
202 PF07302 AroM: AroM protein; 26.4 2.2E+02 0.0047 21.7 5.4 19 113-131 164-185 (221)
203 COG2890 HemK Methylase of poly 26.4 47 0.001 25.9 1.8 31 9-44 136-167 (280)
204 TIGR00273 iron-sulfur cluster- 26.4 2.9E+02 0.0064 23.1 6.6 43 87-130 52-94 (432)
205 cd08183 Fe-ADH2 Iron-containin 26.2 2.1E+02 0.0044 23.1 5.6 39 91-129 39-80 (374)
206 PF12745 HGTP_anticodon2: Anti 26.0 1.6E+02 0.0035 23.0 4.8 33 97-130 31-63 (273)
207 PRK13010 purU formyltetrahydro 26.0 3.3E+02 0.0071 21.4 9.0 83 2-130 90-175 (289)
208 PRK07481 hypothetical protein; 26.0 1.3E+02 0.0028 24.9 4.5 46 85-130 233-280 (449)
209 cd01017 AdcA Metal binding pro 26.0 2.2E+02 0.0047 21.8 5.5 41 90-130 180-226 (282)
210 PRK11058 GTPase HflX; Provisio 26.0 2.7E+02 0.0058 23.1 6.3 44 88-131 27-81 (426)
211 TIGR01509 HAD-SF-IA-v3 haloaci 25.9 1.6E+02 0.0034 20.2 4.4 38 90-129 145-182 (183)
212 PRK13600 putative ribosomal pr 25.9 91 0.002 20.0 2.8 18 87-104 43-60 (84)
213 PRK11914 diacylglycerol kinase 25.6 1.8E+02 0.004 22.5 5.1 14 116-129 56-69 (306)
214 PRK06931 diaminobutyrate--2-ox 25.2 1.5E+02 0.0032 24.8 4.7 47 84-130 244-292 (459)
215 TIGR00640 acid_CoA_mut_C methy 25.2 1.2E+02 0.0027 20.8 3.6 33 96-130 27-59 (132)
216 PLN02616 tetrahydrofolate dehy 25.2 1.7E+02 0.0037 24.1 4.9 40 87-126 120-159 (364)
217 PRK07483 hypothetical protein; 25.2 1.6E+02 0.0036 24.3 5.0 47 84-130 219-267 (443)
218 TIGR00200 cinA_nterm competenc 25.1 2.1E+02 0.0045 23.8 5.5 39 91-130 25-65 (413)
219 cd01455 vWA_F11C1-5a_type Von 25.0 53 0.0011 24.4 1.8 17 7-25 1-17 (191)
220 TIGR03702 lip_kinase_YegS lipi 25.0 3.1E+02 0.0067 21.1 6.2 35 94-129 22-57 (293)
221 cd01465 vWA_subgroup VWA subgr 25.0 2E+02 0.0044 19.5 4.8 35 8-44 2-43 (170)
222 PRK10674 deoxyribodipyrimidine 24.9 2.2E+02 0.0048 23.8 5.7 42 88-131 59-103 (472)
223 cd01545 PBP1_SalR Ligand-bindi 24.8 2.7E+02 0.0059 20.1 5.8 12 118-129 74-85 (270)
224 TIGR00682 lpxK tetraacyldisacc 24.8 94 0.002 24.7 3.3 27 105-131 102-128 (311)
225 PRK00286 xseA exodeoxyribonucl 24.7 4E+02 0.0086 21.9 9.2 109 20-130 53-198 (438)
226 PRK13210 putative L-xylulose 5 24.7 2.2E+02 0.0049 21.3 5.3 43 88-130 54-113 (284)
227 cd01541 PBP1_AraR Ligand-bindi 24.6 2.4E+02 0.0053 20.6 5.5 14 90-103 20-33 (273)
228 cd01018 ZntC Metal binding pro 24.5 2.3E+02 0.0049 21.6 5.3 41 90-130 179-223 (266)
229 TIGR01139 cysK cysteine syntha 24.4 1.6E+02 0.0036 22.7 4.6 40 90-131 71-110 (298)
230 cd01561 CBS_like CBS_like: Thi 24.4 1.6E+02 0.0036 22.5 4.6 40 90-131 67-106 (291)
231 TIGR01682 moaD molybdopterin c 24.2 1E+02 0.0022 18.9 2.8 27 7-42 48-74 (80)
232 PRK06058 4-aminobutyrate amino 24.1 1.8E+02 0.0039 24.0 5.0 46 85-130 239-286 (443)
233 PRK11761 cysM cysteine synthas 24.0 1.6E+02 0.0035 22.9 4.5 40 90-131 77-116 (296)
234 COG1058 CinA Predicted nucleot 23.9 2.9E+02 0.0063 21.5 5.8 38 91-130 26-66 (255)
235 PRK00652 lpxK tetraacyldisacch 23.7 1.1E+02 0.0024 24.5 3.5 27 105-131 123-149 (325)
236 PRK10128 2-keto-3-deoxy-L-rham 23.2 2.4E+02 0.0052 22.0 5.2 39 90-131 8-46 (267)
237 PRK15454 ethanol dehydrogenase 23.1 2E+02 0.0044 23.4 5.1 42 88-129 66-111 (395)
238 PRK05437 isopentenyl pyrophosp 23.1 2.9E+02 0.0062 22.3 5.9 41 88-130 175-216 (352)
239 PRK07480 putative aminotransfe 23.0 1.4E+02 0.0029 24.9 4.1 47 84-130 238-286 (456)
240 cd06318 PBP1_ABC_sugar_binding 22.9 2.3E+02 0.005 20.8 5.0 13 118-130 74-86 (282)
241 cd00959 DeoC 2-deoxyribose-5-p 22.9 2.7E+02 0.0059 20.3 5.3 39 88-128 107-148 (203)
242 PF01297 TroA: Periplasmic sol 22.8 1.9E+02 0.004 21.7 4.5 40 90-131 190-229 (256)
243 PF00202 Aminotran_3: Aminotra 22.8 68 0.0015 25.4 2.2 45 86-130 198-244 (339)
244 TIGR00237 xseA exodeoxyribonuc 22.8 4.5E+02 0.0097 21.8 9.4 109 20-130 47-193 (432)
245 PRK13685 hypothetical protein; 22.8 2.3E+02 0.0049 22.4 5.2 38 6-45 88-137 (326)
246 cd06296 PBP1_CatR_like Ligand- 22.6 2.6E+02 0.0057 20.3 5.3 14 117-130 71-84 (270)
247 PRK00549 competence damage-ind 22.6 2.5E+02 0.0055 23.2 5.6 39 91-130 25-65 (414)
248 cd01574 PBP1_LacI Ligand-bindi 22.6 2.9E+02 0.0063 19.9 5.5 14 90-103 20-33 (264)
249 COG1082 IolE Sugar phosphate i 22.6 2.6E+02 0.0056 20.7 5.3 41 90-130 49-103 (274)
250 PF03463 eRF1_1: eRF1 domain 1 22.6 47 0.001 22.8 1.1 17 26-43 27-43 (132)
251 PF02310 B12-binding: B12 bind 22.6 2.2E+02 0.0048 18.3 6.0 38 91-130 20-57 (121)
252 PRK11070 ssDNA exonuclease Rec 22.6 2.4E+02 0.0052 24.6 5.6 33 98-131 126-158 (575)
253 TIGR00289 conserved hypothetic 22.5 3.5E+02 0.0075 20.5 9.0 33 8-46 2-34 (222)
254 COG2197 CitB Response regulato 22.5 3.2E+02 0.0069 20.1 5.8 28 102-131 26-53 (211)
255 PF13578 Methyltransf_24: Meth 22.5 99 0.0021 19.6 2.6 31 10-43 72-104 (106)
256 cd06354 PBP1_BmpA_PnrA_like Pe 22.4 2.5E+02 0.0054 20.8 5.2 15 90-104 23-37 (265)
257 cd06277 PBP1_LacI_like_1 Ligan 22.3 3.1E+02 0.0067 19.9 5.6 14 117-130 73-86 (268)
258 PF02441 Flavoprotein: Flavopr 22.3 1.8E+02 0.004 19.4 4.0 34 7-43 1-34 (129)
259 cd01121 Sms Sms (bacterial rad 22.3 2.6E+02 0.0056 22.8 5.5 42 89-131 123-165 (372)
260 PF08865 DUF1830: Domain of un 22.2 34 0.00074 21.2 0.3 19 25-44 20-38 (68)
261 PRK06394 rpl13p 50S ribosomal 22.1 1.5E+02 0.0032 21.1 3.6 35 10-46 4-38 (146)
262 PRK10717 cysteine synthase A; 22.1 1.8E+02 0.0039 22.9 4.5 40 90-131 78-117 (330)
263 TIGR03436 acidobact_VWFA VWFA- 22.0 2.2E+02 0.0049 21.7 4.9 39 6-45 53-97 (296)
264 COG2272 PnbA Carboxylesterase 22.0 59 0.0013 27.8 1.7 24 21-44 162-187 (491)
265 TIGR01460 HAD-SF-IIA Haloacid 21.8 3.4E+02 0.0074 20.1 6.2 39 90-129 193-232 (236)
266 PLN02565 cysteine synthase 21.8 1.9E+02 0.0041 22.9 4.5 40 90-131 81-120 (322)
267 TIGR00064 ftsY signal recognit 21.8 1.7E+02 0.0037 22.6 4.2 43 88-131 116-161 (272)
268 cd05565 PTS_IIB_lactose PTS_II 21.7 1.2E+02 0.0027 19.9 2.9 17 89-105 18-34 (99)
269 PRK06988 putative formyltransf 21.6 2E+02 0.0044 22.7 4.7 38 90-130 46-83 (312)
270 PF04077 DsrH: DsrH like prote 21.5 81 0.0017 20.1 2.0 23 19-43 4-26 (88)
271 COG1092 Predicted SAM-dependen 21.4 57 0.0012 27.0 1.5 19 10-32 243-261 (393)
272 TIGR01425 SRP54_euk signal rec 21.4 1.7E+02 0.0038 24.5 4.4 43 88-131 144-189 (429)
273 TIGR02151 IPP_isom_2 isopenten 21.3 3.6E+02 0.0079 21.4 6.1 42 88-130 168-209 (333)
274 PF10996 Beta-Casp: Beta-Casp 21.2 1.2E+02 0.0025 20.0 2.8 36 6-43 80-115 (126)
275 COG1537 PelA Predicted RNA-bin 21.0 89 0.0019 25.6 2.5 24 20-45 19-42 (352)
276 cd02071 MM_CoA_mut_B12_BD meth 21.0 1.6E+02 0.0034 19.6 3.5 35 94-130 22-56 (122)
277 TIGR01428 HAD_type_II 2-haloal 20.8 2.4E+02 0.0051 19.9 4.6 40 89-130 152-191 (198)
278 KOG0257 Kynurenine aminotransf 20.8 3.5E+02 0.0076 22.8 5.9 23 20-43 102-124 (420)
279 TIGR01993 Pyr-5-nucltdase pyri 20.7 2E+02 0.0044 20.0 4.2 37 91-129 147-183 (184)
280 cd00958 DhnA Class I fructose- 20.6 1.9E+02 0.0041 21.4 4.1 42 88-129 111-161 (235)
281 TIGR02253 CTE7 HAD superfamily 20.5 2.3E+02 0.005 20.2 4.5 40 90-130 155-194 (221)
282 COG4046 Uncharacterized protei 20.4 1.3E+02 0.0028 24.5 3.2 25 19-45 337-361 (368)
283 KOG1250 Threonine/serine dehyd 20.3 2.4E+02 0.0051 23.9 4.8 38 90-129 128-165 (457)
284 PRK14974 cell division protein 20.3 1.7E+02 0.0036 23.6 3.9 43 88-131 184-229 (336)
285 PRK05678 succinyl-CoA syntheta 20.2 2.6E+02 0.0055 22.1 4.9 39 90-128 80-120 (291)
286 TIGR02638 lactal_redase lactal 20.2 2.5E+02 0.0055 22.6 5.1 13 117-129 79-91 (379)
287 TIGR01990 bPGM beta-phosphoglu 20.2 1.2E+02 0.0026 21.0 2.8 39 90-130 146-184 (185)
288 PRK07409 threonine synthase; V 20.1 2.4E+02 0.0052 22.4 4.9 42 89-131 91-132 (353)
289 COG1167 ARO8 Transcriptional r 20.1 3.6E+02 0.0079 22.4 6.0 44 6-56 201-244 (459)
290 PRK08742 adenosylmethionine--8 20.0 1.8E+02 0.0039 24.4 4.2 46 85-130 257-304 (472)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.70 E-value=5.7e-16 Score=108.29 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=77.9
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChHH
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVE 87 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
+||||+|+| +.|++||+||++.. .+.|+.|+++||.++...+... .+.. .......++..+..+. .
T Consensus 1 ~ILVavD~S-~~s~~al~~a~~~a-~~~~~~l~ll~v~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~-----~ 66 (146)
T cd01989 1 SVAVAVDKD-KKSKNALKWALDNL-ATKGQTIVLVHVHPPITSIPSS-----SGKL--EVASAYKQEEDKEAKE-----L 66 (146)
T ss_pred CEEEEecCc-cccHHHHHHHHHhc-cCCCCcEEEEEeccCcccCCCC-----ccch--HHHHHHHHHHHHHHHH-----H
Confidence 589999999 78999999999776 7789999999998753221110 0000 0111111222222222 4
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|+++.+.|++.+++++..+..|++|.+.|+++|++.++|+|||
T Consensus 67 l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~ 109 (146)
T cd01989 67 LLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVM 109 (146)
T ss_pred HHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEE
Confidence 7788889988999999999988667889999999999999998
No 2
>PRK15005 universal stress protein F; Provisional
Probab=99.44 E-value=2e-12 Score=89.89 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=69.6
Q ss_pred eEEEEEEeCCccc--ChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhC
Q 036644 7 ERVVVIQDASRDV--NSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQT 84 (131)
Q Consensus 7 r~VvVavD~Ske~--S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
++||||+|+| ++ |.+|++||++-. .+.|..|+++||+++......... . ...... .. ++..+..+.
T Consensus 3 ~~ILv~~D~s-~~~~~~~a~~~a~~la-~~~~~~l~ll~v~~~~~~~~~~~~-~----~~~~~~-~~-~~~~~~~~~--- 70 (144)
T PRK15005 3 RTILVPIDIS-DSELTQRVISHVEAEA-KIDDAEVHFLTVIPSLPYYASLGL-A----YSAELP-AM-DDLKAEAKS--- 70 (144)
T ss_pred ccEEEecCCC-chhHHHHHHHHHHHHH-hccCCeEEEEEEEccCcccccccc-c----ccccch-HH-HHHHHHHHH---
Confidence 6899999999 55 579999999654 678889999999974221111100 0 000011 11 111111111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 85 NVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 85 ~~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++.+.+...++.+++.+..|+ |.+.|++.|++.++|+|||
T Consensus 71 --~l~~~~~~~~~~~~~~~~~v~~G~-p~~~I~~~a~~~~~DLIV~ 113 (144)
T PRK15005 71 --QLEEIIKKFKLPTDRVHVHVEEGS-PKDRILELAKKIPADMIII 113 (144)
T ss_pred --HHHHHHHHhCCCCCceEEEEeCCC-HHHHHHHHHHHcCCCEEEE
Confidence 133444444556678888888996 5668999999999999997
No 3
>PRK15456 universal stress protein UspG; Provisional
Probab=99.43 E-value=2.1e-12 Score=90.23 Aligned_cols=108 Identities=15% Similarity=0.248 Sum_probs=69.7
Q ss_pred eEEEEEEeCCc-ccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 7 ERVVVIQDASR-DVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 7 r~VvVavD~Sk-e~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
++||||+|+|. +.|.+|++||+ ++ .+.+..|+++||+++...+. .. .+.... +..++...+..+.
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~-~l-a~~~~~l~llhv~~~~~~~~---~~----~~~~~~-~~~~~~~~~~~~~---- 68 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAE-FL-AQDDGVIHLLHVLPGSASLS---LH----RFAADV-RRFEEHLQHEAEE---- 68 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHH-HH-HhcCCeEEEEEEecCccccc---cc----ccccch-hhHHHHHHHHHHH----
Confidence 68999999994 47999999999 57 34456999999987432111 10 000011 1111222221111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+++.+.....++++++.+..|++ .+.|++.|++.++|+|||
T Consensus 69 -~l~~~~~~~~~~~~~v~~~v~~G~~-~~~I~~~a~~~~~DLIVm 111 (142)
T PRK15456 69 -RLQTMVSHFTIDPSRIKQHVRFGSV-RDEVNELAEELGADVVVI 111 (142)
T ss_pred -HHHHHHHHhCCCCcceEEEEcCCCh-HHHHHHHHhhcCCCEEEE
Confidence 1334444444457888989999965 568999999999999997
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.42 E-value=4.1e-12 Score=89.20 Aligned_cols=106 Identities=10% Similarity=0.186 Sum_probs=67.8
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChH
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNV 86 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (131)
++||||+|+| +.|.+||++|++ ++.+.|..|+++||.++... ..... .. +..+...+...+..+.
T Consensus 4 k~ILvavD~S-~~s~~al~~A~~-lA~~~~a~l~llhV~~~~~~-~~~~~------~~-~~~~~~~~~~~~~~~~----- 68 (142)
T PRK09982 4 KHIGVAISGN-EEDALLVNKALE-LARHNDAHLTLIHIDDGLSE-LYPGI------YF-PATEDILQLLKNKSDN----- 68 (142)
T ss_pred eEEEEEecCC-cchHHHHHHHHH-HHHHhCCeEEEEEEccCcch-hchhh------hc-cchHHHHHHHHHHHHH-----
Confidence 6899999999 679999999996 53678889999999864321 11000 01 1111121222222221
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++.+.+. ...+++.+..|+ |.+.|++.|++.+||+|||
T Consensus 69 ~l~~~~~~~~--~~~~~~~v~~G~-p~~~I~~~A~~~~aDLIVm 109 (142)
T PRK09982 69 KLYKLTKNIQ--WPKTKLRIERGE-MPETLLEIMQKEQCDLLVC 109 (142)
T ss_pred HHHHHHHhcC--CCcceEEEEecC-HHHHHHHHHHHcCCCEEEE
Confidence 1333333332 245677788896 5668999999999999997
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.40 E-value=4.5e-12 Score=88.50 Aligned_cols=106 Identities=12% Similarity=0.163 Sum_probs=67.0
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
-++||||+|+| +.|.+||+||++-. ...|..|+++||.++....+ .. .........+++..+..
T Consensus 3 ~~~ILvavD~S-~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~--~~------~~~~~~~~~~~~~~~~~------ 66 (144)
T PRK15118 3 YKHILIAVDLS-PESKVLVEKAVSMA-RPYNAKVSLIHVDVNYSDLY--TG------LIDVNLGDMQKRISEET------ 66 (144)
T ss_pred ceEEEEEccCC-hhHHHHHHHHHHHH-HhhCCEEEEEEEccChhhhh--hh------hhhcchHHHHHHHHHHH------
Confidence 36899999999 67999999999644 56788999999943211110 00 00000111111111111
Q ss_pred HHHHHHHHHHHhcCCeEEEEE-EecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEV-RPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v-~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+.+.+++++.++.....+ ..|+ |.+.|++.|++.++|+|||
T Consensus 67 --~~~l~~~~~~~~~~~~~~~~~~G~-p~~~I~~~a~~~~~DLIV~ 109 (144)
T PRK15118 67 --HHALTELSTNAGYPITETLSGSGD-LGQVLVDAIKKYDMDLVVC 109 (144)
T ss_pred --HHHHHHHHHhCCCCceEEEEEecC-HHHHHHHHHHHhCCCEEEE
Confidence 1234555667788765444 4685 5778999999999999998
No 6
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.26 E-value=1.3e-10 Score=93.53 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=68.3
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCC--CCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKH--GDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQ 83 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~--gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
-+||+||+||| +.|.+|++.|++ ++... |..|++|||.++. +.. . .. ....+..++
T Consensus 5 ykkILVavDGS-e~S~~Al~~Aie-lA~~~g~~AeL~lL~Vv~~~--~~~------~---~~---~~~~~~~ee------ 62 (357)
T PRK12652 5 ANRLLVPVADS-VTVRQTVAYAVE-SAEEAAETPTVHLVAAASGR--AVD------P---EG---QDELAAAEE------ 62 (357)
T ss_pred cCeEEEEeCCC-HHHHHHHHHHHH-HHHhcCCCCEEEEEEEecCc--ccc------c---ch---hHHHHHHHH------
Confidence 58999999999 789999999995 52444 4699999998631 110 0 00 011011010
Q ss_pred ChHHHHHHHHHHHh------cCCeEEEEEEe--------cCCchhHHHHHHHhcCCCEEEeC
Q 036644 84 TNVEIEQISKLCQA------ENIEFEIEVRP--------GVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 84 ~~~~l~~~~~~c~~------~~V~~~~~v~~--------G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
+++++.+.+++ .|+++++.+.. |+ |.+.|++.|++.++|+||||
T Consensus 63 ---lle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~-pae~Iv~~Aee~~aDLIVm~ 120 (357)
T PRK12652 63 ---LLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGD-YAEVLIAYAEEHGIDRVVLD 120 (357)
T ss_pred ---HHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCC-HHHHHHHHHHHcCCCEEEEC
Confidence 13344444443 68999988876 65 56689999999999999998
No 7
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.23 E-value=1.8e-10 Score=78.25 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=64.7
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChHH
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVE 87 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
+|+||+|+| +.|++|++||.+.. .+.|..|+++|+.++... . . . ++..+ .
T Consensus 1 ~Ilv~vd~s-~~s~~al~~a~~la-~~~~~~l~ll~v~~~~~~----~-------~----~----~~~~~---------~ 50 (124)
T cd01987 1 RILVCISGG-PNAERLIRRAARLA-DRLKAPWYVVYVETPRLN----R-------L----S----EAERR---------R 50 (124)
T ss_pred CEEEEECCC-cchHHHHHHHHHHH-HHhCCCEEEEEEecCccc----c-------C----C----HHHHH---------H
Confidence 589999999 67999999999654 567789999999852110 0 0 0 11111 2
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
++.+.+.+++.++.+. +..|.++.+.|++++++.++|+|||
T Consensus 51 l~~~~~~~~~~~~~~~--~~~~~~~~~~I~~~~~~~~~dllvi 91 (124)
T cd01987 51 LAEALRLAEELGAEVV--TLPGDDVAEAIVEFAREHNVTQIVV 91 (124)
T ss_pred HHHHHHHHHHcCCEEE--EEeCCcHHHHHHHHHHHcCCCEEEe
Confidence 4466677777777543 4444457889999999999999998
No 8
>PRK10116 universal stress protein UspC; Provisional
Probab=99.20 E-value=3.7e-10 Score=78.40 Aligned_cols=105 Identities=11% Similarity=0.181 Sum_probs=68.0
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
-++|+|++|+| +.|.+||++|+ +++.+.|..|+++|+.++. ++ +.. ......+.+++...+..
T Consensus 3 ~~~ILv~~D~s-~~s~~al~~A~-~lA~~~~a~l~ll~v~~~~--~~-~~~------~~~~~~~~~~~~~~~~~------ 65 (142)
T PRK10116 3 YSNILVAVAVT-PESQQLLAKAV-SIARPVNGKISLITLASDP--EM-YNQ------FAAPMLEDLRSVMQEET------ 65 (142)
T ss_pred CceEEEEccCC-cchHHHHHHHH-HHHHHhCCEEEEEEEccCc--cc-chh------hhHHHHHHHHHHHHHHH------
Confidence 47999999999 67999999999 5534567899999998642 11 100 00111122222221111
Q ss_pred HHHHHHHHHHHhcCCeEE-EEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFE-IEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~-~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+.+++.+++.+++.. ..+..|+ +.+.|++.+++.++|+|||
T Consensus 66 --~~~l~~~~~~~~~~~~~~~~~~G~-~~~~I~~~a~~~~~DLiV~ 108 (142)
T PRK10116 66 --QSFLDKLIQDADYPIEKTFIAYGE-LSEHILEVCRKHHFDLVIC 108 (142)
T ss_pred --HHHHHHHHHhcCCCeEEEEEecCC-HHHHHHHHHHHhCCCEEEE
Confidence 1134555667787664 4555675 5678999999999999998
No 9
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.16 E-value=1.1e-09 Score=74.48 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=70.7
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChHH
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVE 87 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
+|+|++|+| +.+.++|+||..=. .+.+-.|+++|++++.... .. .. ... ..+..+. .
T Consensus 1 ~ILv~vd~s-~~~~~~l~~a~~la-~~~~~~v~ll~v~~~~~~~---~~--------~~-~~~----~~~~~~~-----~ 57 (132)
T cd01988 1 RILVPVANP-NTARDLLELAAALA-RAQNGEIIPLNVIEVPNHS---SP--------SQ-LEV----NVQRARK-----L 57 (132)
T ss_pred CEEEecCCc-hhHHHHHHHHHHHh-hcCCCeEEEEEEEecCCCC---Cc--------ch-hHH----HHHHHHH-----H
Confidence 589999999 67999999999533 4566699999998742111 00 00 011 1111112 3
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
++.+.+.+++.|++++..+..+..+.+.|++.+++.++|+|||
T Consensus 58 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~ 100 (132)
T cd01988 58 LRQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIM 100 (132)
T ss_pred HHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEE
Confidence 6677888888999998887664356678999999999999997
No 10
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.14 E-value=1.2e-09 Score=73.40 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=66.5
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChH
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNV 86 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (131)
|+|+|++|+| +.+.+|++||+... .+.|..|+++|+.+..... ... ..................
T Consensus 3 ~~Ilv~~d~~-~~~~~al~~a~~la-~~~~~~i~~l~v~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~---- 66 (140)
T PF00582_consen 3 KRILVAIDGS-EESRRALRFALELA-KRSGAEITLLHVIPPPPQY---SFS-------AAEDEESEEEAEEEEQAR---- 66 (140)
T ss_dssp SEEEEEESSS-HHHHHHHHHHHHHH-HHHTCEEEEEEEEESCHCH---HHH-------HHHHHHHHHHHHHHHHHH----
T ss_pred CEEEEEECCC-HHHHHHHHHHHHHH-HhhCCeEEEEEeecccccc---ccc-------cccccccccccchhhhhh----
Confidence 7899999999 67999999999765 6789999999999732111 000 000001000001100000
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.......+...+......+..|+ +.+.|++.+++.++|+|||
T Consensus 67 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~dliv~ 108 (140)
T PF00582_consen 67 -QAEAEEAEAEGGIVIEVVIESGD-VADAIIEFAEEHNADLIVM 108 (140)
T ss_dssp -HHHHHHHHHHTTSEEEEEEEESS-HHHHHHHHHHHTTCSEEEE
T ss_pred -hHHHHHHhhhccceeEEEEEeec-cchhhhhccccccceeEEE
Confidence 00112334445566676777774 6778999999999999997
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.13 E-value=8.6e-10 Score=85.55 Aligned_cols=110 Identities=11% Similarity=0.150 Sum_probs=71.7
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChH
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNV 86 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (131)
++|+|++|+| +.|.+||+||+. ++.+.|..|+++|++++...+.. .. ......+...+...+..+.
T Consensus 4 ~~ILv~~D~s-~~~~~al~~a~~-lA~~~~a~l~ll~v~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~----- 69 (305)
T PRK11175 4 QNILVVIDPN-QDDQPALRRAVY-LAQRNGGKITAFLPIYDFSYEMT-TL------LSPDEREAMRQGVISQRTA----- 69 (305)
T ss_pred ceEEEEcCCC-ccccHHHHHHHH-HHHhcCCCEEEEEeccCchhhhh-cc------cchhHHHHHHHHHHHHHHH-----
Confidence 5899999999 679999999995 63456679999999864222111 00 0011111111111111111
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+.+...++..+++++..+.++.++.+.|++.|++.++|+|||
T Consensus 70 ~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~ 113 (305)
T PRK11175 70 WIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVK 113 (305)
T ss_pred HHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEE
Confidence 25566666777899999888763356678999999999999998
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.06 E-value=5.9e-09 Score=69.49 Aligned_cols=99 Identities=17% Similarity=0.247 Sum_probs=72.5
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChHH
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVE 87 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
+|+|++|+| +.+.++++||.+-. .+.+..|+++|+.++...... ...+......+. .
T Consensus 1 ~ilv~i~~~-~~~~~~l~~a~~~a-~~~~~~i~~l~v~~~~~~~~~----------------~~~~~~~~~~~~-----~ 57 (130)
T cd00293 1 RILVAVDGS-EESERALRWAARLA-RRLGAELVLLHVVDPPPSSAA----------------ELAELLEEEARA-----L 57 (130)
T ss_pred CEEEEeCCC-HHHHHHHHHHHHHH-HhcCCEEEEEEEecCCCCcch----------------hHHHHHHHHHHH-----H
Confidence 589999999 56999999999776 667889999999753211110 111111121111 3
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|+.+...|...++.+...+..|++ ...|++.+++.++|+|||
T Consensus 58 l~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvi 99 (130)
T cd00293 58 LEALREALAEAGVKVETVVLEGDP-AEAILEAAEELGADLIVM 99 (130)
T ss_pred HHHHHHHHhcCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEE
Confidence 667787888889999988888876 668999999999999998
No 13
>PRK11175 universal stress protein UspE; Provisional
Probab=98.63 E-value=4.4e-07 Score=70.33 Aligned_cols=108 Identities=13% Similarity=0.233 Sum_probs=64.7
Q ss_pred ceEEEEEEeCCccc------ChhHHhhHhhhcccCC-CCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHH
Q 036644 6 CERVVVIQDASRDV------NSSAIGGILKNLSLKH-GDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRK 78 (131)
Q Consensus 6 ~r~VvVavD~Ske~------S~~Al~WaL~nv~~~~-gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (131)
.++|++|+|+|.+. +.+||++|+ +++.+- +-.|+++|+++.... ++. ...... ......+...+.
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~-~la~~~~~a~l~ll~v~~~~~~--~~~--~~~~~~---~~~~~~~~~~~~ 223 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAI-DLAEQLNHAEVHLVNAYPVTPI--NIA--IELPEF---DPSVYNDAIRGQ 223 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHH-HHHhhCcCCceEEEEEecCcch--hcc--cccccc---chhhHHHHHHHH
Confidence 58999999999543 367999998 452333 668999999863221 110 000000 011111111111
Q ss_pred HHhhhChHHHHHHHHHHHhcCCeE-EEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 79 KEEYQTNVEIEQISKLCQAENIEF-EIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 79 ~~~~~~~~~l~~~~~~c~~~~V~~-~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
. .+.+.++.++.++.. .+.+..|+ +.+.|++.|++.++|+|||
T Consensus 224 ~--------~~~l~~~~~~~~~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVm 267 (305)
T PRK11175 224 H--------LLAMKALRQKFGIDEEQTHVEEGL-PEEVIPDLAEHLDAELVIL 267 (305)
T ss_pred H--------HHHHHHHHHHhCCChhheeeccCC-HHHHHHHHHHHhCCCEEEE
Confidence 1 123455555667765 35566785 5678999999999999998
No 14
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.58 E-value=3e-06 Score=58.25 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=76.2
Q ss_pred ceEEEEEEe-CCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhC
Q 036644 6 CERVVVIQD-ASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQT 84 (131)
Q Consensus 6 ~r~VvVavD-~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
.++|++++| +| +.+..|++++++.. ...+..+.++++.++........... ................+.
T Consensus 5 ~~~il~~~d~~s-~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--- 74 (154)
T COG0589 5 YKKILVAVDVGS-EAAEKALEEAVALA-KRLGAPLILLVVIDPLEPTALVSVAL-----ADAPIPLSEEELEEEAEE--- 74 (154)
T ss_pred cceEEEEeCCCC-HHHHHHHHHHHHHH-HhcCCeEEEEEEeccccccccccccc-----ccchhhhhHHHHHHHHHH---
Confidence 689999999 99 67999999999776 66777888999986543221111100 000000111111111112
Q ss_pred hHHHHHHHHHHHhcCCe-EEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 85 NVEIEQISKLCQAENIE-FEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 85 ~~~l~~~~~~c~~~~V~-~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++.+.+..+..++. +...+..|.++.+.|++.+.+.+||+|||
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~ 119 (154)
T COG0589 75 --LLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVV 119 (154)
T ss_pred --HHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEE
Confidence 255677788888888 48899999886678999999999999997
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=97.28 E-value=0.0041 Score=55.66 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=65.3
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
..+|||+|++| ..|.+.++++. .++.+-|-.+++|||.++- .. ... . ++ .+ .
T Consensus 250 ~eriLV~v~~~-~~~~~lIr~~~-rlA~~~~a~~~~l~V~~~~---~~---------~~~---~---~~-~~---~---- 301 (895)
T PRK10490 250 RDAILLCIGHN-TGSEKLVRTAA-RLAARLGSVWHAVYVETPR---LH---------RLP---E---KK-RR---A---- 301 (895)
T ss_pred CCeEEEEECCC-cchHHHHHHHH-HHHHhcCCCEEEEEEecCC---cC---------cCC---H---HH-HH---H----
Confidence 57899999999 57999999998 5646667799999996420 00 000 0 11 11 1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+.+..++|++.|-+ +....|++.-+.|.+.|+..|++.|||
T Consensus 302 --l~~~~~lA~~lGa~--~~~~~~~dva~~i~~~A~~~~vt~IVi 342 (895)
T PRK10490 302 --ILSALRLAQELGAE--TATLSDPAEEKAVLRYAREHNLGKIII 342 (895)
T ss_pred --HHHHHHHHHHcCCE--EEEEeCCCHHHHHHHHHHHhCCCEEEE
Confidence 22234588888877 445566667779999999999999997
No 16
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=94.31 E-value=0.64 Score=33.52 Aligned_cols=36 Identities=22% Similarity=0.072 Sum_probs=26.7
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
+|+|++.|.++ |.-++.++.+-. .+.|..+.++|+-
T Consensus 1 ~v~va~SGG~D-S~~ll~ll~~~~-~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVD-SMALLHLLLKLQ-PKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHH-HHHHHHHHHHHH-HHcCCCEEEEEeC
Confidence 58999999987 887877766533 3346678999984
No 17
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.24 E-value=0.64 Score=41.66 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=65.6
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
..+|+|++++|. -|.+-++||- .++-+-+-..+.|||-.|-.. .. . +.-++
T Consensus 248 ~e~ilvcI~~~~-~~e~liR~a~-RlA~~~~a~~~av~v~~~~~~----~~------~---------~~~~~-------- 298 (890)
T COG2205 248 RERILVCISGSP-GSEKLIRRAA-RLASRLHAKWTAVYVETPELH----RL------S---------EKEAR-------- 298 (890)
T ss_pred cceEEEEECCCC-chHHHHHHHH-HHHHHhCCCeEEEEEeccccc----cc------c---------HHHHH--------
Confidence 479999999995 5999999998 564677778999998642110 00 0 00011
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|.....+|++.| .++..+.|.+-...|.+.|+..|++.||+
T Consensus 299 -~l~~~~~Lae~lG--ae~~~l~~~dv~~~i~~ya~~~~~TkiVi 340 (890)
T COG2205 299 -RLHENLRLAEELG--AEIVTLYGGDVAKAIARYAREHNATKIVI 340 (890)
T ss_pred -HHHHHHHHHHHhC--CeEEEEeCCcHHHHHHHHHHHcCCeeEEe
Confidence 1445677888777 45556666667779999999999999997
No 18
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=94.17 E-value=1 Score=34.24 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=56.6
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
..+..+|+.-+ -+...+.++|+.+ |.|++..|.| ||+- +++++....+
T Consensus 110 g~k~GlalnP~--T~~~~i~~~l~~v-----D~VlvMtV~P------Gf~G-----------Q~fi~~~l~K-------- 157 (223)
T PRK08745 110 GCQAGLVLNPA--TPVDILDWVLPEL-----DLVLVMSVNP------GFGG-----------QAFIPSALDK-------- 157 (223)
T ss_pred CCceeEEeCCC--CCHHHHHHHHhhc-----CEEEEEEECC------CCCC-----------ccccHHHHHH--------
Confidence 35778888776 3788999999888 9999999842 4321 1222222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+.+++++.++++.++.+.|--|=. .+.| ....+.+||.+|+
T Consensus 158 --I~~l~~~~~~~~~~~~IeVDGGI~-~eti-~~l~~aGaDi~V~ 198 (223)
T PRK08745 158 --LRAIRKKIDALGKPIRLEIDGGVK-ADNI-GAIAAAGADTFVA 198 (223)
T ss_pred --HHHHHHHHHhcCCCeeEEEECCCC-HHHH-HHHHHcCCCEEEE
Confidence 334455666666665544444443 3345 7888999999985
No 19
>PRK14057 epimerase; Provisional
Probab=93.31 E-value=2.2 Score=33.13 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=55.7
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChHH
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVE 87 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
+..||+.-+ -+-..+.++|+.+ |.|++..|.| ||+- +++++....+
T Consensus 134 kaGlAlnP~--Tp~e~i~~~l~~v-----D~VLvMtV~P------GfgG-----------Q~Fi~~~l~K---------- 179 (254)
T PRK14057 134 IRGISLCPA--TPLDVIIPILSDV-----EVIQLLAVNP------GYGS-----------KMRSSDLHER---------- 179 (254)
T ss_pred eeEEEECCC--CCHHHHHHHHHhC-----CEEEEEEECC------CCCc-----------hhccHHHHHH----------
Confidence 688888776 3888999999888 9999999842 3321 2233222222
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+.+++++.++++.++.+.+=-|-. .+.| ..+.+.+||++|+
T Consensus 180 I~~lr~~~~~~~~~~~IeVDGGI~-~~ti-~~l~~aGad~~V~ 220 (254)
T PRK14057 180 VAQLLCLLGDKREGKIIVIDGSLT-QDQL-PSLIAQGIDRVVS 220 (254)
T ss_pred HHHHHHHHHhcCCCceEEEECCCC-HHHH-HHHHHCCCCEEEE
Confidence 223455555667665544444443 3345 8888999999985
No 20
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=92.70 E-value=3 Score=31.88 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=56.7
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
..++.||+.-. -+...+..+|..+ |.|++..|.| ||+- ++++++...+
T Consensus 108 G~kaGlalnP~--T~~~~l~~~l~~v-----D~VLvMsV~P------Gf~G-----------Q~fi~~~l~K-------- 155 (229)
T PRK09722 108 GMKVGLVLNPE--TPVESIKYYIHLL-----DKITVMTVDP------GFAG-----------QPFIPEMLDK-------- 155 (229)
T ss_pred CCCEEEEeCCC--CCHHHHHHHHHhc-----CEEEEEEEcC------CCcc-----------hhccHHHHHH--------
Confidence 35778888776 3778888888877 9999999842 4321 2233233333
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+.+++++.++++.++.+.+=-|=. .+.| ..+.+.+||.+|+
T Consensus 156 --I~~lr~~~~~~~~~~~IeVDGGI~-~~~i-~~~~~aGad~~V~ 196 (229)
T PRK09722 156 --IAELKALRERNGLEYLIEVDGSCN-QKTY-EKLMEAGADVFIV 196 (229)
T ss_pred --HHHHHHHHHhcCCCeEEEEECCCC-HHHH-HHHHHcCCCEEEE
Confidence 224455666777665555544543 3344 7888899999985
No 21
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=92.69 E-value=2.8 Score=32.01 Aligned_cols=87 Identities=13% Similarity=0.165 Sum_probs=54.5
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChHH
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVE 87 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
+..+|+.-+ -+...+.++|+.+ |.|++..|.| ||+- +.+++....+
T Consensus 120 kaGlalnP~--Tp~~~i~~~l~~v-----D~VLiMtV~P------GfgG-----------Q~f~~~~l~K---------- 165 (228)
T PRK08091 120 LIGLCLCPE--TPISLLEPYLDQI-----DLIQILTLDP------RTGT-----------KAPSDLILDR---------- 165 (228)
T ss_pred eEEEEECCC--CCHHHHHHHHhhc-----CEEEEEEECC------CCCC-----------ccccHHHHHH----------
Confidence 778888776 3788899999887 9999999842 4321 1122122222
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+.+++++.++++.++.+.+=-|-. .+.+ ..+.+.+||++|.
T Consensus 166 I~~lr~~~~~~~~~~~IeVDGGI~-~~ti-~~l~~aGaD~~V~ 206 (228)
T PRK08091 166 VIQVENRLGNRRVEKLISIDGSMT-LELA-SYLKQHQIDWVVS 206 (228)
T ss_pred HHHHHHHHHhcCCCceEEEECCCC-HHHH-HHHHHCCCCEEEE
Confidence 223455555677665544444544 3345 7888999999985
No 22
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=92.58 E-value=2.5 Score=32.21 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=53.1
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChH
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNV 86 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (131)
-+..|++.-. -+..+++++|+.+ |.|++..|.| ||+- ++++++...+
T Consensus 110 ~kaGv~lnP~--Tp~~~i~~~l~~v-----D~VllMsVnP------GfgG-----------Q~Fi~~~l~K--------- 156 (220)
T COG0036 110 VKAGLVLNPA--TPLEALEPVLDDV-----DLVLLMSVNP------GFGG-----------QKFIPEVLEK--------- 156 (220)
T ss_pred CeEEEEECCC--CCHHHHHHHHhhC-----CEEEEEeECC------CCcc-----------cccCHHHHHH---------
Confidence 4556666544 4788899999888 9999999853 3321 2233233333
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+.+++++..+++ ++.+.|=-|-. .+.| ..+.+.+||++|.
T Consensus 157 -i~~lr~~~~~~~-~~~IeVDGGI~-~~t~-~~~~~AGad~~Va 196 (220)
T COG0036 157 -IRELRAMIDERL-DILIEVDGGIN-LETI-KQLAAAGADVFVA 196 (220)
T ss_pred -HHHHHHHhcccC-CeEEEEeCCcC-HHHH-HHHHHcCCCEEEE
Confidence 223455555555 55544444533 3344 9999999999985
No 23
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=92.40 E-value=3.1 Score=30.00 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=50.1
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChHH
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVE 87 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
||+||+=|-++ |. +|-+.|..+..+.|-.+.++||-+.... . .. ++
T Consensus 1 ki~va~SGG~D-S~-~Ll~~l~~~~~~~~~~~~~~~vdh~~~~------------~----s~---~~------------- 46 (182)
T PF01171_consen 1 KILVAVSGGKD-SM-ALLHLLKELRRRNGIKLIAVHVDHGLRE------------E----SD---EE------------- 46 (182)
T ss_dssp EEEEE--SSHH-HH-HHHHHHHHHHTTTTTEEEEEEEE-STSC------------C----HH---HH-------------
T ss_pred CEEEEEcCCHH-HH-HHHHHHHHHHHhcCCCeEEEEEecCCCc------------c----cc---hh-------------
Confidence 68999999877 76 5667777773455669999999752110 0 00 00
Q ss_pred HHHHHHHHHhcCCeEEEEEEe-----cCCch--------hHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRP-----GVSLK--------TVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~-----G~~~~--------~~I~~~a~~~~a~~vVl 130 (131)
...+.++|++.||++.+.-.. +.... ..+.+.|++.+++.|++
T Consensus 47 ~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~ 102 (182)
T PF01171_consen 47 AEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIAL 102 (182)
T ss_dssp HHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE-
T ss_pred HHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceee
Confidence 114477888888888765553 11221 34556777788877764
No 24
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=91.76 E-value=2.8 Score=29.89 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=52.3
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChHH
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVE 87 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
+|+|++.|.++ |.-++.++..-. .+-|..+.++|+-+ |... . .++ .
T Consensus 1 ~v~v~~SGG~D-S~vl~~l~~~~~-~~~~~~v~~v~id~------~~~~----------~---~~~-------------~ 46 (185)
T cd01992 1 KILVAVSGGPD-SMALLHLLSELK-PRLGLRLVAVHVDH------GLRP----------E---SDE-------------E 46 (185)
T ss_pred CEEEEeCCCHH-HHHHHHHHHHHH-HHcCCcEEEEEecC------CCCc----------h---HHH-------------H
Confidence 58999999977 887776665422 22255788998842 1100 0 000 1
Q ss_pred HHHHHHHHHhcCCeEEEE--EE-ecCCch----------hHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIE--VR-PGVSLK----------TVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~--v~-~G~~~~----------~~I~~~a~~~~a~~vVl 130 (131)
++.+.++|+..|+++.+. .. .+.... ..+.+.|++++++.|++
T Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~ 102 (185)
T cd01992 47 AAFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLT 102 (185)
T ss_pred HHHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 335577888888877754 11 111110 24667888888888764
No 25
>PRK08005 epimerase; Validated
Probab=89.29 E-value=5.6 Score=29.96 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=27.0
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
..++.+|+.-+ -+...+.++++.+ |.|++..|.
T Consensus 106 G~k~GlAlnP~--Tp~~~i~~~l~~v-----D~VlvMsV~ 138 (210)
T PRK08005 106 GAKAGLALNPA--TPLLPYRYLALQL-----DALMIMTSE 138 (210)
T ss_pred CCcEEEEECCC--CCHHHHHHHHHhc-----CEEEEEEec
Confidence 45788888776 3888899999888 999999984
No 26
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=83.84 E-value=3.5 Score=30.77 Aligned_cols=89 Identities=20% Similarity=0.312 Sum_probs=49.7
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
.-++.+|+.-. -+...+..+++.+ |.|++..|.| |++- +.++++...+
T Consensus 105 g~k~GialnP~--T~~~~~~~~l~~v-----D~VlvMsV~P------G~~G-----------q~f~~~~~~K-------- 152 (201)
T PF00834_consen 105 GIKAGIALNPE--TPVEELEPYLDQV-----DMVLVMSVEP------GFGG-----------QKFIPEVLEK-------- 152 (201)
T ss_dssp TSEEEEEE-TT--S-GGGGTTTGCCS-----SEEEEESS-T------TTSS-----------B--HGGHHHH--------
T ss_pred CCCEEEEEECC--CCchHHHHHhhhc-----CEEEEEEecC------CCCc-----------ccccHHHHHH--------
Confidence 35677788665 3667777777766 8888888732 3221 1122222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+++++++..+++-++.+.+=-|-. .+.+ ....+.+||.+|.
T Consensus 153 --I~~l~~~~~~~~~~~~I~vDGGI~-~~~~-~~~~~aGad~~V~ 193 (201)
T PF00834_consen 153 --IRELRKLIPENGLDFEIEVDGGIN-EENI-KQLVEAGADIFVA 193 (201)
T ss_dssp --HHHHHHHHHHHTCGSEEEEESSES-TTTH-HHHHHHT--EEEE
T ss_pred --HHHHHHHHHhcCCceEEEEECCCC-HHHH-HHHHHcCCCEEEE
Confidence 335566777777666655554543 3344 8888999999985
No 27
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=83.26 E-value=1.5 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=26.2
Q ss_pred EEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEE
Q 036644 9 VVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 9 VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv 44 (131)
|+++++++.+ |..++.||...- +.+..++.+|+
T Consensus 1 ilv~~sgg~d-S~~~l~~~~~~~--~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLD-SSVLLHLAKRLK--SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHH-HHHHHHHHHHHH--hcCCCEEEEEe
Confidence 6899999965 999999998754 44567777776
No 28
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=83.06 E-value=18 Score=27.32 Aligned_cols=88 Identities=15% Similarity=0.253 Sum_probs=51.9
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChH
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNV 86 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (131)
.+..+++.-+ -+...+..+++.+ |.|++..|.| |++- +++++....+
T Consensus 107 ~k~GlalnP~--Tp~~~i~~~l~~~-----D~vlvMtV~P------GfgG-----------q~fi~~~lek--------- 153 (220)
T PRK08883 107 CQAGVVLNPA--TPLHHLEYIMDKV-----DLILLMSVNP------GFGG-----------QSFIPHTLDK--------- 153 (220)
T ss_pred CcEEEEeCCC--CCHHHHHHHHHhC-----CeEEEEEecC------CCCC-----------ceecHhHHHH---------
Confidence 4667777665 3677777777766 8888888742 3221 1122122222
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+.++++..++++.++.+.+--|=. .+.+ ....+.+||.+|+
T Consensus 154 -I~~l~~~~~~~~~~~~I~vdGGI~-~eni-~~l~~aGAd~vVv 194 (220)
T PRK08883 154 -LRAVRKMIDESGRDIRLEIDGGVK-VDNI-REIAEAGADMFVA 194 (220)
T ss_pred -HHHHHHHHHhcCCCeeEEEECCCC-HHHH-HHHHHcCCCEEEE
Confidence 234455555666665555544444 3345 7888999999985
No 29
>PLN02285 methionyl-tRNA formyltransferase
Probab=82.00 E-value=9.5 Score=30.62 Aligned_cols=94 Identities=12% Similarity=0.185 Sum_probs=50.2
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
+.||++. ||.++|...|+==+++. ..++...-++.|+.....|.|.+.. ....
T Consensus 6 ~~kI~f~--Gt~~fa~~~L~~L~~~~-~~~~~~~~iv~Vvt~~~~~~gr~~~-----------------------~~~~- 58 (334)
T PLN02285 6 KKRLVFL--GTPEVAATVLDALLDAS-QAPDSAFEVAAVVTQPPARRGRGRK-----------------------LMPS- 58 (334)
T ss_pred ccEEEEE--ECCHHHHHHHHHHHhhh-hccCCCCeEEEEEeCCCCcccCCcc-----------------------cCCC-
Confidence 5666655 67677777776555554 2232235555665433333322110 0001
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
..+++|+++||++...........+.+++..+++++|++|+
T Consensus 59 ----pv~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~ 99 (334)
T PLN02285 59 ----PVAQLALDRGFPPDLIFTPEKAGEEDFLSALRELQPDLCIT 99 (334)
T ss_pred ----HHHHHHHHcCCCcceecCccccCCHHHHHHHHhhCCCEEEh
Confidence 33556777888754333332222334668888999999885
No 30
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=80.81 E-value=9.3 Score=30.52 Aligned_cols=111 Identities=15% Similarity=0.008 Sum_probs=60.9
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
.+-|||.+|.. +|..=|..|+..+ +.-..+++.+-.....+|.+-..+...|++ ...++....+.--.+.+.
T Consensus 154 VgAVvvg~D~h--fsy~KL~kA~~yL--qnP~clflatn~D~~~p~~~~~~ipG~G~~----v~av~~~t~R~P~v~GKP 225 (306)
T KOG2882|consen 154 VGAVVVGYDEH--FSYPKLMKALNYL--QNPGCLFLATNRDATTPPTPGVEIPGAGSF----VAAVKFATGRQPIVLGKP 225 (306)
T ss_pred CCEEEEecccc--cCHHHHHHHHHHh--CCCCcEEEeccCccccCCCCCeeccCCccH----HHHHHHHhcCCCeecCCC
Confidence 67899999987 8999999999777 433566666655555556655555544443 333321111111111110
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
- -.-+..+-++.++..+=.+..||+...=| ..++..+..
T Consensus 226 ~-~~m~~~l~~~~~i~psRt~mvGDRL~TDI-lFG~~~G~~ 264 (306)
T KOG2882|consen 226 S-TFMFEYLLEKFNIDPSRTCMVGDRLDTDI-LFGKNCGFK 264 (306)
T ss_pred C-HHHHHHHHHHcCCCcceEEEEcccchhhh-hHhhccCcc
Confidence 0 01223344556677666666787765333 666555544
No 31
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=79.23 E-value=3.9 Score=33.65 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=25.8
Q ss_pred EEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEE
Q 036644 10 VVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 10 vVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv 44 (131)
++.+.|| +..|++=++.|+ .+|||.++++-.
T Consensus 58 ~~ll~gs---Gt~amEAav~sl-~~pgdkVLv~~n 88 (383)
T COG0075 58 VVLLSGS---GTLAMEAAVASL-VEPGDKVLVVVN 88 (383)
T ss_pred EEEEcCC---cHHHHHHHHHhc-cCCCCeEEEEeC
Confidence 4467787 678999999999 899999887764
No 32
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=76.68 E-value=5.4 Score=24.72 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=25.9
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.|+|+++++ .-.+. +|+= .. ++.||.|-+++++
T Consensus 31 ~~~vav~vNg~--iVpr~-~~~~-~~-l~~gD~ievv~~v 65 (68)
T COG2104 31 PEGVAVAVNGE--IVPRS-QWAD-TI-LKEGDRIEVVRVV 65 (68)
T ss_pred CceEEEEECCE--Eccch-hhhh-cc-ccCCCEEEEEEee
Confidence 57899999998 23322 3665 44 5899999999986
No 33
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=73.86 E-value=9 Score=27.56 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=27.0
Q ss_pred cceEEEEEEeCCcccC-------hhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 5 LCERVVVIQDASRDVN-------SSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 5 ~~r~VvVavD~Ske~S-------~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.++.|++.+|.|...+ +.++...++.+ +++|.+-|+..-
T Consensus 12 ~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l--~~~d~v~lv~F~ 57 (190)
T cd01463 12 SPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTL--SDNDFFNIITFS 57 (190)
T ss_pred CCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhC--CCCCEEEEEEeC
Confidence 4789999999995443 45555555544 688988777643
No 34
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=73.41 E-value=38 Score=25.81 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=25.6
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccC--CCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLK--HGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~--~gD~l~llhv~ 45 (131)
..+|+||+-|-++ |...|.| +..+..+ .|-.|..+|+-
T Consensus 29 ~~kilVa~SGG~D-S~~LL~l-l~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 29 GDRVMVCLSGGKD-SYTLLDI-LLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCEEEEEecCCHH-HHHHHHH-HHHHHHhCCCCeEEEEEEec
Confidence 5789999999987 8755544 4445212 23478888874
No 35
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=67.72 E-value=15 Score=30.34 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=45.4
Q ss_pred ChhHHhhHhhhcccCCCCEEEEEEEecCCCCCC-------Cceeecc-----CCCcccccHHHHHHHHHHHH--------
Q 036644 20 NSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPM-------GYKIRLD-----SSSMVRTNQKIIEEHISRKK-------- 79 (131)
Q Consensus 20 S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------- 79 (131)
-..++.++++.+ .++||.|++.. |+.+|+ |...... .|.... -.+.+|+.+.+..
T Consensus 92 VVpgi~~~I~~~-T~~gd~Vvi~t---PvY~PF~~~i~~n~R~~i~~pL~~~~~~y~i-D~~~LE~~~~~~~vkl~iLCn 166 (388)
T COG1168 92 VVPGISLAIRAL-TKPGDGVVIQT---PVYPPFYNAIKLNGRKVIENPLVEDDGRYEI-DFDALEKAFVDERVKLFILCN 166 (388)
T ss_pred chHhHHHHHHHh-CcCCCeeEecC---CCchHHHHHHhhcCcEEEeccccccCCcEEe-cHHHHHHHHhcCCccEEEEeC
Confidence 457899999999 89999988754 444442 1111111 111111 1223444443332
Q ss_pred -----HhhhChHHHHHHHHHHHhcCCeEE
Q 036644 80 -----EEYQTNVEIEQISKLCQAENIEFE 103 (131)
Q Consensus 80 -----~~~~~~~~l~~~~~~c~~~~V~~~ 103 (131)
......+.|.++.++|+++||-+-
T Consensus 167 PHNP~Grvwt~eeL~~i~elc~kh~v~VI 195 (388)
T COG1168 167 PHNPTGRVWTKEELRKIAELCLRHGVRVI 195 (388)
T ss_pred CCCCCCccccHHHHHHHHHHHHHcCCEEE
Confidence 122344579999999999998663
No 36
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.56 E-value=59 Score=26.91 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+-+++.|+.+- +..|++ .+++.+.+++.+|+.|+.|
T Consensus 80 L~~L~~~L~~~g~~L~--v~~g~~-~~~l~~l~~~~~i~~V~~~ 120 (454)
T TIGR00591 80 LDEVANECERLIIPFH--LLDGPP-KELLPYFVDLHAAAAVVTD 120 (454)
T ss_pred HHHHHHHHHHcCCceE--EeecCh-HHHHHHHHHHcCCCEEEEe
Confidence 4456667777777664 456864 6689999999999999864
No 37
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=65.17 E-value=37 Score=22.38 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEe-----------cCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRP-----------GVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~-----------G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|+.+..+|+..|+.+...+.. |...=+-|-+.++..+++.||+|
T Consensus 10 l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd 64 (95)
T PF13167_consen 10 LEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFD 64 (95)
T ss_pred HHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEEC
Confidence 667888998888777544332 11111235677778999999987
No 38
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=63.67 E-value=74 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=27.9
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcc-cCCCCEEEEEEEec
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLS-LKHGDSLKFLAVLH 46 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~-~~~gD~l~llhv~~ 46 (131)
..+|+||+=|-++ |. +|-+.+..+. ..+|-.|+.+||.+
T Consensus 15 ~~~ilvavSGG~D-S~-~Ll~~l~~~~~~~~~~~l~a~hvnh 54 (436)
T PRK10660 15 SRQILVAFSGGLD-ST-VLLHLLVQWRTENPGVTLRAIHVHH 54 (436)
T ss_pred CCeEEEEecCCHH-HH-HHHHHHHHHHHhcCCCeEEEEEEeC
Confidence 4789999999877 77 4445555552 23577999999964
No 39
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=62.78 E-value=13 Score=25.12 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++......+...+-+.+..+++|.|
T Consensus 49 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 49 SKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 5578999999999998887666677788998888765
No 40
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=61.75 E-value=19 Score=29.47 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+.+++.|+.+- +..|++ .+++.+.+++++|+.|+.|
T Consensus 63 L~~L~~~L~~~g~~L~--v~~G~~-~~vl~~L~~~~~~~~V~~~ 103 (429)
T TIGR02765 63 LKDLRTSLRKLGSDLL--VRSGKP-EDVLPELIKELGVRTVFLH 103 (429)
T ss_pred HHHHHHHHHHcCCCeE--EEeCCH-HHHHHHHHHHhCCCEEEEe
Confidence 4566777777787764 457864 6689999999999999875
No 41
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=58.66 E-value=60 Score=23.20 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc---CCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF---KATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~---~a~~vV 129 (131)
++++...+++.||.+++.+..-.+.-+.+.+.++++ +++.+|
T Consensus 16 ~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viI 60 (150)
T PF00731_consen 16 AEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVII 60 (150)
T ss_dssp HHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEE
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEE
Confidence 446677888899999999998766544455555554 456555
No 42
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=57.32 E-value=1.5e+02 Score=26.89 Aligned_cols=116 Identities=9% Similarity=0.048 Sum_probs=57.7
Q ss_pred cceEEEEEEeCCcccChhHHhhHhh-hcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhh
Q 036644 5 LCERVVVIQDASRDVNSSAIGGILK-NLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQ 83 (131)
Q Consensus 5 ~~r~VvVavD~Ske~S~~Al~WaL~-nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
..-||++++-.. ++-...++-.-- |=..+..-.++++|.++-.......-..-+.... ..+...+. ..+.
T Consensus 457 ~elriL~cv~~~-~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~---~~~~~~~~-----~~~~ 527 (832)
T PLN03159 457 AELRMLVCVHTP-RNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKS---GRPALNRT-----QAQS 527 (832)
T ss_pred CceeEEEEeccC-CcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccc---cccccccc-----cccc
Confidence 346899999887 545555543221 1112233489999998844222111000000000 00000000 0000
Q ss_pred ChHHHHHHHHHHHhc-CCeEEEEEEe--cCCchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAE-NIEFEIEVRP--GVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~-~V~~~~~v~~--G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+ .++..++.+.++. +|.++..... -..--+-||..|++.++++||+
T Consensus 528 ~-~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIil 576 (832)
T PLN03159 528 D-HIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIII 576 (832)
T ss_pred c-HHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEE
Confidence 1 1344455554433 6777754443 2244567999999999999986
No 43
>PRK07440 hypothetical protein; Provisional
Probab=56.49 E-value=19 Score=22.08 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=25.4
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
++.|.|++++. =..+ . +|.-.. +++||.|-+++++
T Consensus 33 ~~~vav~~N~~-iv~r-~-~w~~~~--L~~gD~IEIv~~v 67 (70)
T PRK07440 33 PRLVAVEYNGE-ILHR-Q-FWEQTQ--VQPGDRLEIVTIV 67 (70)
T ss_pred CCeEEEEECCE-EeCH-H-HcCcee--cCCCCEEEEEEEe
Confidence 57899999997 2232 2 475543 5899999999985
No 44
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=55.73 E-value=68 Score=22.41 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=24.3
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccC-C-CCEEEEEEEec
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLK-H-GDSLKFLAVLH 46 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~-~-gD~l~llhv~~ 46 (131)
+|+|++-|-++ |.-.+.++. +...+ + |-.++.+|+-+
T Consensus 1 ~v~v~~SGG~D-S~~ll~~l~-~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKD-SLVLLHVLK-KLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHH-HHHHHHHHH-HHHhhcCCCeEEEEEEEEC
Confidence 58899999877 776665544 44111 2 55788899853
No 45
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=55.66 E-value=24 Score=22.92 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+++.|++.|+++.+.......... .+...+--.||+||+
T Consensus 20 ~L~~aa~~~g~~~~ve~~~~~g~~~-~l~~~~i~~Ad~vi~ 59 (96)
T cd05569 20 ALEKAAKKLGWEIKVETQGSLGIEN-ELTAEDIAEADAVIL 59 (96)
T ss_pred HHHHHHHHCCCeEEEEEecCcCccC-cCCHHHHhhCCEEEE
Confidence 6688999999998876664432232 224455567777775
No 46
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=54.33 E-value=33 Score=20.55 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=24.4
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.|.|++++. =..+. +|. .. +++||.|-+++.+
T Consensus 29 ~~~vav~~N~~-iv~r~--~~~--~~-L~~gD~ieIv~~V 62 (65)
T PRK05863 29 EKGIAVAVDWS-VLPRS--DWA--TK-LRDGARLEVVTAV 62 (65)
T ss_pred CCcEEEEECCc-CcChh--Hhh--hh-cCCCCEEEEEeec
Confidence 56889999887 22333 365 24 5899999999875
No 47
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=54.15 E-value=52 Score=25.12 Aligned_cols=35 Identities=11% Similarity=-0.067 Sum_probs=26.8
Q ss_pred hcCCeEEEEEEecCCchh--HHHHHHHhcCCCEEEeC
Q 036644 97 AENIEFEIEVRPGVSLKT--VAVRVAKKFKATWIILD 131 (131)
Q Consensus 97 ~~~V~~~~~v~~G~~~~~--~I~~~a~~~~a~~vVlD 131 (131)
+.++++.+|+-.|.+..+ .+++.+++.+|++|.+|
T Consensus 132 ~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 132 ELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD 168 (231)
T ss_pred cCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe
Confidence 447888889888654222 67888999999999875
No 48
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=53.50 E-value=43 Score=25.89 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|.++-+.++..||.+..+|- |-- .-+++|++.+|+.|=|
T Consensus 115 l~~~i~~L~~~gIrVSLFid---P~~-~qi~~A~~~GAd~VEL 153 (239)
T PRK05265 115 LKPAIARLKDAGIRVSLFID---PDP-EQIEAAAEVGADRIEL 153 (239)
T ss_pred HHHHHHHHHHCCCEEEEEeC---CCH-HHHHHHHHhCcCEEEE
Confidence 44666777889999998883 323 3459999999998843
No 49
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.26 E-value=25 Score=28.58 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=35.6
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhc---ccCCCCEEEEEEEecCCCCCC
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNL---SLKHGDSLKFLAVLHQVNNPM 52 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv---~~~~gD~l~llhv~~~~~~~~ 52 (131)
-+|++|||.|-+....+++=+...+ ...+|-+++|+.+-..+..++
T Consensus 262 ~~i~vaVDtSGS~~d~ei~a~~~Ei~~Il~~~~~eltli~~D~~v~~~~ 310 (396)
T COG3864 262 IKIVVAVDTSGSMTDAEIDAAMTEIFDILKNKNYELTLIECDNIVRRMY 310 (396)
T ss_pred hheEEEEecCCCccHHHHHHHHHHHHHHHhCCCcEEEEEEecchhhhhh
Confidence 4799999999667788888777665 456889999999976655554
No 50
>PRK06437 hypothetical protein; Provisional
Probab=53.06 E-value=20 Score=21.76 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=22.2
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
++.|.|++++.- .. .+.. +++||+|-++++.
T Consensus 34 ~~~vaV~vNg~i-v~-------~~~~-L~dgD~Veiv~~V 64 (67)
T PRK06437 34 EEEYVVIVNGSP-VL-------EDHN-VKKEDDVLILEVF 64 (67)
T ss_pred CccEEEEECCEE-CC-------CceE-cCCCCEEEEEecc
Confidence 467788888872 22 3445 7899999999875
No 51
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=52.72 E-value=40 Score=28.23 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+-+++.|+.+ .+..|+ +.+++.+.+++++++.|+.+
T Consensus 57 L~~L~~~L~~~G~~L--~v~~G~-p~~vl~~l~~~~~~~~V~~~ 97 (471)
T TIGR03556 57 LQELQQRYQQAGSQL--LILQGD-PVQLIPQLAQQLGAKAVYWN 97 (471)
T ss_pred HHHHHHHHHHCCCCe--EEEECC-HHHHHHHHHHHcCCCEEEEe
Confidence 445677777778766 455786 56689999999999999864
No 52
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=52.28 E-value=21 Score=26.30 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHH---HHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVA---VRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I---~~~a~~~~a~~vVlD 131 (131)
.++++.+++..||.+.. .....++.+.+ ++..++.+.|+|++|
T Consensus 45 ~eQL~~~a~~l~vp~~~-~~~~~~~~~~~~~~l~~~~~~~~D~vlID 90 (196)
T PF00448_consen 45 VEQLKTYAEILGVPFYV-ARTESDPAEIAREALEKFRKKGYDLVLID 90 (196)
T ss_dssp HHHHHHHHHHHTEEEEE-SSTTSCHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHhccccch-hhcchhhHHHHHHHHHHHhhcCCCEEEEe
Confidence 44667788877877652 22222344433 344556778888887
No 53
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=52.03 E-value=62 Score=25.65 Aligned_cols=43 Identities=5% Similarity=0.009 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCeEEEEEEe-cCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRP-GVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~-G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+...+.+++.+|++...... ..-|. .|.+..++++.|.||+
T Consensus 116 YL~~Cl~~Ykql~i~a~G~~~~E~eqp~-~i~~Ll~~~~PDIlVi 159 (283)
T TIGR02855 116 YLRKCLKLYKKIGVPVVGIHCKEKEMPE-KVLDLIEEVRPDILVI 159 (283)
T ss_pred HHHHHHHHHHHhCCceEEEEecchhchH-HHHHHHHHhCCCEEEE
Confidence 4666667778899999876664 44455 6889999999999997
No 54
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=51.09 E-value=38 Score=23.72 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+-.++.|+. +.+..|+ +.+.+-+.+++++++.|+.+
T Consensus 55 L~~L~~~L~~~g~~--L~v~~g~-~~~~l~~l~~~~~~~~V~~~ 95 (165)
T PF00875_consen 55 LADLQESLRKLGIP--LLVLRGD-PEEVLPELAKEYGATAVYFN 95 (165)
T ss_dssp HHHHHHHHHHTTS---EEEEESS-HHHHHHHHHHHHTESEEEEE
T ss_pred HHHHHHHHHhcCcc--eEEEecc-hHHHHHHHHHhcCcCeeEec
Confidence 44556666677765 5677786 56688899999999999864
No 55
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=49.92 E-value=55 Score=24.48 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCeEEEEEEecC-C---chhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGV-S---LKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~-~---~~~~I~~~a~~~~a~~vVl 130 (131)
...++|++.||.+...-.... + -.+.+.+..+++++|++|+
T Consensus 40 ~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~ 84 (207)
T PLN02331 40 GGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLL 84 (207)
T ss_pred hHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEE
Confidence 457789999998853222111 1 0335778899999999986
No 56
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=49.81 E-value=47 Score=25.00 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=29.4
Q ss_pred HHHHHHhcCCeEEEEEEecCC----chhHHHHHHHhcCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVS----LKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~----~~~~I~~~a~~~~a~~vVl 130 (131)
..+++++.||...+.-..+.+ -...|+++.++.++|||||
T Consensus 42 ~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvL 85 (200)
T COG0299 42 ALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVL 85 (200)
T ss_pred HHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 355677888888655444443 2457899999999999997
No 57
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=49.43 E-value=59 Score=25.83 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCeEEEEEEe-cCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRP-GVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~-G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|++..+.+++.+|++...... ..-|+ .|.+..++++.|.|||
T Consensus 117 YL~~Cl~~Ykql~i~a~G~~~~E~eqp~-~i~~Ll~~~~PDIlVi 160 (287)
T PF05582_consen 117 YLNKCLKVYKQLGIPAVGIHVPEKEQPE-KIYRLLEEYRPDILVI 160 (287)
T ss_pred HHHHHHHHHHHcCCceEEEEechHHhhH-HHHHHHHHcCCCEEEE
Confidence 4666677778999999876664 43455 7889999999999997
No 58
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.73 E-value=23 Score=23.27 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=22.2
Q ss_pred ccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 18 DVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 18 e~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
+.+..|+.|+.+.+-+..|+.|.+..=+
T Consensus 4 ~vtd~A~~wfk~E~~l~~g~~vrffvRy 31 (95)
T COG4841 4 EVTDQALKWFKEELDLEEGNKVRFFVRY 31 (95)
T ss_pred EEcHHHHHHHHHhcCCCCCCEEEEEEEE
Confidence 4678999999999977889988755443
No 59
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=48.73 E-value=32 Score=20.85 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=25.1
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
++.|.|++++. =.++. +|.-.- ++.||.|-+++++
T Consensus 30 ~~~vav~vN~~-iv~r~--~w~~~~--L~~gD~iEIv~~V 64 (67)
T PRK07696 30 NKIVVVERNKD-ILQKD--DHTDTS--VFDGDQIEIVTFV 64 (67)
T ss_pred CCeEEEEECCE-EeCHH--HcCcee--cCCCCEEEEEEEe
Confidence 57888999987 23332 465433 5899999999986
No 60
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=48.33 E-value=47 Score=24.08 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=24.9
Q ss_pred cceEEEEEEeCCcccC-------------hhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 5 LCERVVVIQDASRDVN-------------SSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 5 ~~r~VvVavD~Ske~S-------------~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+..|++.+|.|.... ++++.-.++. ..++|.+-|+..-
T Consensus 19 ~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~--l~~~~~v~lv~F~ 70 (206)
T cd01456 19 LPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANA--LPDGTRLGLWTFS 70 (206)
T ss_pred CCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHh--CCCCceEEEEEec
Confidence 4688999999994322 2234444443 3578988887754
No 61
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=48.07 E-value=19 Score=24.27 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=14.4
Q ss_pred hHHhhHhhhcccCCCCEEEEEEE
Q 036644 22 SAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 22 ~Al~WaL~nv~~~~gD~l~llhv 44 (131)
-|-.||.. +++||.|.+.+-
T Consensus 94 pas~WA~~---A~pGd~v~v~gP 113 (117)
T PF08021_consen 94 PASRWARS---ARPGDRVGVTGP 113 (117)
T ss_dssp HHHHHHHH-----TT-EEEEEEE
T ss_pred chHHHHhh---CCCCCEEEEeCC
Confidence 58899986 799999999874
No 62
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=48.07 E-value=42 Score=27.30 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHH---HHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVA---VRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I---~~~a~~~~a~~vVlD 131 (131)
+++++.+.++.||.+-..= .|.+|-.++ ++.|+..+.|.|++|
T Consensus 183 iEQL~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliD 228 (340)
T COG0552 183 IEQLEVWGERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLID 228 (340)
T ss_pred HHHHHHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 6688999999898876532 576676454 478889999999998
No 63
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=47.19 E-value=35 Score=27.28 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCch-------hHHHHHHHhcCCC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLK-------TVAVRVAKKFKAT 126 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~-------~~I~~~a~~~~a~ 126 (131)
-.++.++|+++||.++.---=|.+.. +.+++.|++++-+
T Consensus 190 Q~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~~l~~iA~K~~kt 235 (300)
T KOG1577|consen 190 QKKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDPVLKEIAKKYNKT 235 (300)
T ss_pred hHHHHHHHhhCCcEEEEecCCCCCCCccccccCHHHHHHHHHhCCC
Confidence 34789999999999987655554333 4677888887653
No 64
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=46.80 E-value=1.3e+02 Score=22.96 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=26.1
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEec
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~ 46 (131)
.+|+||+=|-++ |..+| +.|..+ .+. =.+.++||.+
T Consensus 22 ~~ilVavSGGkD-S~~ll-~~L~~l-~~~-~~~~a~~Vd~ 57 (298)
T COG0037 22 YKILVAVSGGKD-SLALL-HLLKEL-GRR-IEVEAVHVDH 57 (298)
T ss_pred CeEEEEeCCChH-HHHHH-HHHHHh-ccC-ceEEEEEecC
Confidence 689999999987 77555 555555 233 5788999864
No 65
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.78 E-value=40 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEec
Q 036644 88 IEQISKLCQAENIEFEIEVRPG 109 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G 109 (131)
+.+++..|++.||.+-...++|
T Consensus 60 i~~Lr~~~~~~giPVvyTaqp~ 81 (218)
T COG1535 60 IAKLRIWCKQAGIPVVYTAQPG 81 (218)
T ss_pred HHHHHHHHHHcCCcEEEEecCC
Confidence 5578999999999999999888
No 66
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=44.88 E-value=40 Score=21.61 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=24.9
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.|.|++++. =..+ =+|.-.- +++||.|-+++.+
T Consensus 47 ~~~vAVevNg~-iVpr--~~w~~t~--L~egD~IEIv~~V 81 (84)
T PRK06083 47 ELGCVFAINNQ-VVPR--SEWQSTV--LSSGDAISLFQAI 81 (84)
T ss_pred CceEEEEECCE-EeCH--HHcCccc--CCCCCEEEEEEEe
Confidence 57888899986 2222 2475533 5899999999975
No 67
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=43.63 E-value=87 Score=24.87 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhH---HHHHHHhcCCCEEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTV---AVRVAKKFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~---I~~~a~~~~a~~vV 129 (131)
++.+..++.++.+.+....|+|+-+. +++.+++.++|.||
T Consensus 40 ~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 82 (351)
T cd08170 40 KIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVI 82 (351)
T ss_pred HHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEE
Confidence 44555566777776555567666543 34555677888876
No 68
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=43.33 E-value=81 Score=21.79 Aligned_cols=38 Identities=8% Similarity=-0.028 Sum_probs=24.5
Q ss_pred HHHHHhcCCeEEEEEEecCCchhHHHHHHHhc--CCCEEEe
Q 036644 92 SKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF--KATWIIL 130 (131)
Q Consensus 92 ~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~--~a~~vVl 130 (131)
...+++.|+++......+|++. .|.++.++. ++|+||+
T Consensus 33 ~~~l~~~G~~v~~~~~v~Dd~~-~i~~~l~~~~~~~DliIt 72 (144)
T TIGR00177 33 AALLEEAGFNVSRLGIVPDDPE-EIREILRKAVDEADVVLT 72 (144)
T ss_pred HHHHHHCCCeEEEEeecCCCHH-HHHHHHHHHHhCCCEEEE
Confidence 4455667888877766777655 455554433 6888875
No 69
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=43.03 E-value=75 Score=25.99 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=22.7
Q ss_pred EEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 12 IQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 12 avD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
++-|| ..-+++=|+.|+ ..|||.++++-.-
T Consensus 72 ~isgs---Gh~g~E~al~N~-lePgd~vLv~~~G 101 (385)
T KOG2862|consen 72 VISGS---GHSGWEAALVNL-LEPGDNVLVVSTG 101 (385)
T ss_pred EEecC---CcchHHHHHHhh-cCCCCeEEEEEec
Confidence 44455 445888899999 8999988777653
No 70
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.66 E-value=58 Score=26.60 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=41.9
Q ss_pred ccChhHHhhHhhhcccCCCCEEEEEEEecC-CCCC---CCceeeccCCCcccccHHHHHHHHHHHHHhhhChHHHHHHHH
Q 036644 18 DVNSSAIGGILKNLSLKHGDSLKFLAVLHQ-VNNP---MGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISK 93 (131)
Q Consensus 18 e~S~~Al~WaL~nv~~~~gD~l~llhv~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 93 (131)
..+++||+-++ .+ +|++-+|++++.-+. ...+ +.++...=.||..|.- ++ .+++.+
T Consensus 256 ~~a~~~~~~~~-~~-lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~-ke-----------------t~E~Ld 315 (360)
T KOG0023|consen 256 NLAEHALEPLL-GL-LKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSR-KE-----------------TQEALD 315 (360)
T ss_pred eccccchHHHH-HH-hhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccH-HH-----------------HHHHHH
Confidence 45788998888 45 589999999998652 1111 1111111123433211 11 224567
Q ss_pred HHHhcCCeEEEEEEec
Q 036644 94 LCQAENIEFEIEVRPG 109 (131)
Q Consensus 94 ~c~~~~V~~~~~v~~G 109 (131)
+|.+++|+..++++.=
T Consensus 316 f~a~~~ik~~IE~v~~ 331 (360)
T KOG0023|consen 316 FVARGLIKSPIELVKL 331 (360)
T ss_pred HHHcCCCcCceEEEeh
Confidence 8888888887777753
No 71
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=42.61 E-value=46 Score=19.87 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=24.5
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.|.|++++. =.++. +|.-. . +++||.|-+++.+
T Consensus 29 ~~~vaVavN~~-iv~r~--~w~~~-~-L~~gD~Ieii~~v 63 (66)
T PRK08053 29 QPGAALAINQQ-IIPRE--QWAQH-I-VQDGDQILLFQVI 63 (66)
T ss_pred CCcEEEEECCE-EeChH--HcCcc-c-cCCCCEEEEEEEc
Confidence 46788999987 23443 36432 3 6999999999875
No 72
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=42.50 E-value=71 Score=21.80 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=22.3
Q ss_pred ceEEEEEEeCCcccChh-------HHhhHhhhcccCCCCEEEEEEE
Q 036644 6 CERVVVIQDASRDVNSS-------AIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~-------Al~WaL~nv~~~~gD~l~llhv 44 (131)
++.|++++|.|...... |+.=++..+ .++|.+-++..
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l--~~~~~~~l~~F 45 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALKDL--PPGDYFNIIGF 45 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHHhC--CCCCEEEEEEe
Confidence 67899999999433212 333333333 57787766554
No 73
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=42.48 E-value=42 Score=22.90 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=27.0
Q ss_pred EEEEEeCCcccChhHHhhHhhhcc---cCCCCEEEEEEEec
Q 036644 9 VVVIQDASRDVNSSAIGGILKNLS---LKHGDSLKFLAVLH 46 (131)
Q Consensus 9 VvVavD~Ske~S~~Al~WaL~nv~---~~~gD~l~llhv~~ 46 (131)
|+|++|.|-+.|.+.|.=++..+. .+-+..+.|+.+=.
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~~~~v~vi~~D~ 41 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRFPAEVHVIQFDA 41 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 579999997788888888777662 22355777776543
No 74
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=42.48 E-value=1.1e+02 Score=22.04 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHH---HHHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVA---VRVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I---~~~a~~~~a~~vV 129 (131)
++++...+++.||++++.|..-.+.-+.+ ++.+++.+++.+|
T Consensus 14 ~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viI 58 (156)
T TIGR01162 14 MKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVII 58 (156)
T ss_pred HHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEE
Confidence 55667788899999999999765543333 4445556777665
No 75
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=42.46 E-value=68 Score=19.95 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
++.+.....|+.+.+.. .+.+.|..+ +.|+..++.++++
T Consensus 20 ~l~~~L~~~gi~v~~d~-~~~~~~k~~-~~a~~~g~p~~ii 58 (94)
T PF03129_consen 20 ELANKLRKAGIRVELDD-SDKSLGKQI-KYADKLGIPFIII 58 (94)
T ss_dssp HHHHHHHHTTSEEEEES-SSSTHHHHH-HHHHHTTESEEEE
T ss_pred HHHHHHHHCCCEEEEEC-CCCchhHHH-HHHhhcCCeEEEE
Confidence 44666678888888776 556778666 9999999998875
No 76
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=42.33 E-value=61 Score=19.07 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=24.3
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.+.|++++. =.++. +|.- .. +++||+|-+++++
T Consensus 29 ~~~vav~vNg~-iv~r~--~~~~-~~-l~~gD~vei~~~v 63 (66)
T PRK05659 29 GRRVAVEVNGE-IVPRS--QHAS-TA-LREGDVVEIVHAL 63 (66)
T ss_pred CCeEEEEECCe-EeCHH--HcCc-cc-CCCCCEEEEEEEe
Confidence 46788889875 23333 4654 44 6999999999875
No 77
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=40.35 E-value=1.3e+02 Score=21.06 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCeEEEEEEe---cCC-------c-------h--hHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRP---GVS-------L-------K--TVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~---G~~-------~-------~--~~I~~~a~~~~a~~vVl 130 (131)
++++++.+++.|+.+...... ... . . ...++.|+.+++..+++
T Consensus 29 ~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~ 90 (213)
T PF01261_consen 29 AEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVV 90 (213)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEE
T ss_pred HHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceee
Confidence 668899999999996543332 111 0 0 34679999999999875
No 78
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=40.10 E-value=78 Score=23.68 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=7.9
Q ss_pred EEEEEeCCcccChhHHhhH
Q 036644 9 VVVIQDASRDVNSSAIGGI 27 (131)
Q Consensus 9 VvVavD~Ske~S~~Al~Wa 27 (131)
|+|=+=|+ .....||-=|
T Consensus 2 i~vl~Sg~-Gsn~~al~~~ 19 (207)
T PLN02331 2 LAVFVSGG-GSNFRAIHDA 19 (207)
T ss_pred EEEEEeCC-ChhHHHHHHH
Confidence 34444444 3345555333
No 79
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=40.08 E-value=93 Score=21.69 Aligned_cols=39 Identities=8% Similarity=-0.125 Sum_probs=26.1
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHh----cCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK----FKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~----~~a~~vVl 130 (131)
+.+++++.|.++.......|++. .|.++.++ .++|+||+
T Consensus 25 l~~~l~~~G~~v~~~~~v~Dd~~-~i~~~l~~~~~~~~~DlVit 67 (152)
T cd00886 25 LVELLEEAGHEVVAYEIVPDDKD-EIREALIEWADEDGVDLILT 67 (152)
T ss_pred HHHHHHHcCCeeeeEEEcCCCHH-HHHHHHHHHHhcCCCCEEEE
Confidence 35567788888777666677766 45555443 26898875
No 80
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.92 E-value=70 Score=25.30 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-|+.++..-...+...+-+.+..+++|.|-
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 88 (284)
T PRK14170 51 NKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDK 88 (284)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44778999999999877776666777889999999874
No 81
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=39.84 E-value=79 Score=19.99 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=17.6
Q ss_pred EEEecCCchhH---HHHHHHhcCCCEEE
Q 036644 105 EVRPGVSLKTV---AVRVAKKFKATWII 129 (131)
Q Consensus 105 ~v~~G~~~~~~---I~~~a~~~~a~~vV 129 (131)
.+..|+++.++ ..+.|++++||-||
T Consensus 20 v~~~~~d~d~Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 20 VSTESDNVDEIVENLREKVKAKGGMGLI 47 (74)
T ss_pred EEEecCCHHHHHHHHHHHHHHcCCCEEE
Confidence 34457777654 35778899999887
No 82
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.51 E-value=72 Score=25.25 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+..++-+.++.+++|.|
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 51 MKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999988887666677788999999987
No 83
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.19 E-value=74 Score=25.19 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|++++..-...+-.++-+.+..+++|.|
T Consensus 51 ~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 87 (286)
T PRK14184 51 NKERACEDAGIVSEAFRLPADTTQEELEDLIAELNAR 87 (286)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999988777666677788999999886
No 84
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=39.15 E-value=1.2e+02 Score=20.43 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHh--cCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK--FKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~--~~a~~vVl 130 (131)
.+.+++++.|.++.......|++. .|.++.++ .++|+||.
T Consensus 22 ~l~~~l~~~G~~~~~~~~v~Dd~~-~I~~~l~~~~~~~dliit 63 (135)
T smart00852 22 ALAELLTELGIEVTRYVIVPDDKE-AIKEALREALERADLVIT 63 (135)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHH-HHHHHHHHHHhCCCEEEE
Confidence 456677888888766666666655 45555544 25788774
No 85
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=39.10 E-value=1e+02 Score=22.40 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHH---HhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVA---KKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a---~~~~a~~vV 129 (131)
+.++-+.+++.||.++++|..-++.-+...+.| ++.+...||
T Consensus 18 mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viI 62 (162)
T COG0041 18 MKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVII 62 (162)
T ss_pred HHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEE
Confidence 445677888899999999998777655565655 444444443
No 86
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.72 E-value=76 Score=25.08 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+..++-+.+..+++|.|
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (286)
T PRK14175 52 SKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNND 88 (286)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999987777666677788999999887
No 87
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.64 E-value=74 Score=25.19 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-.++-+.+..+++|.|
T Consensus 49 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 49 LKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477999999999987777655566688999999886
No 88
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=38.52 E-value=1.1e+02 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=24.7
Q ss_pred cCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 98 ENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 98 ~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.++.+-+|+..|+..+ .+...+-+.++|+|++|
T Consensus 202 ~~~pVgvKl~~~~~~~-~~~~~~~~ag~D~ItID 234 (368)
T PF01645_consen 202 PGKPVGVKLVAGRGVE-DIAAGAAKAGADFITID 234 (368)
T ss_dssp TTSEEEEEEE-STTHH-HHHHHHHHTT-SEEEEE
T ss_pred CCCcEEEEECCCCcHH-HHHHhhhhccCCEEEEe
Confidence 3789999999987655 45455888999999998
No 89
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.47 E-value=76 Score=25.03 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-|++++..-...+-.++-+.+..+++|.|-
T Consensus 46 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 83 (279)
T PRK14178 46 MKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDP 83 (279)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44778999999999887776666667889999999884
No 90
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=38.26 E-value=24 Score=23.50 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=15.3
Q ss_pred eEEEEEEeCCcccChhHHhhHhh
Q 036644 7 ERVVVIQDASRDVNSSAIGGILK 29 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~ 29 (131)
+||+|.=.|.| ++||.|+|.
T Consensus 1 MkVLviGsGgR---EHAia~~l~ 20 (100)
T PF02844_consen 1 MKVLVIGSGGR---EHAIAWKLS 20 (100)
T ss_dssp EEEEEEESSHH---HHHHHHHHT
T ss_pred CEEEEECCCHH---HHHHHHHHh
Confidence 47887776665 489999994
No 91
>PF14124 DUF4291: Domain of unknown function (DUF4291)
Probab=38.25 E-value=28 Score=25.79 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=15.1
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhc
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNL 31 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv 31 (131)
+-.++|||= ++.+|+|+|.|-
T Consensus 64 QErILAI~i----~R~gFe~~L~~a 84 (181)
T PF14124_consen 64 QERILAIRI----KREGFEWALAQA 84 (181)
T ss_pred ceEEEEEEe----eHHHHHHHHHhh
Confidence 334449955 455999999986
No 92
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=38.01 E-value=1.2e+02 Score=24.30 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhH---HHHHHHhcCCCEEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTV---AVRVAKKFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~---I~~~a~~~~a~~vV 129 (131)
++.+.++..++.+.+....|.++.+. +++.+++.++|+||
T Consensus 47 ~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~II 89 (366)
T PRK09423 47 RVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVI 89 (366)
T ss_pred HHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 55666666777765445567776653 34556677888886
No 93
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=37.70 E-value=65 Score=27.74 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=27.7
Q ss_pred ceEEEEEEeCCccc-------ChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDV-------NSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~-------S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
++.+++.+|.|... .+.|+.-+|.++ +++|.+-|+..-
T Consensus 271 p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L--~~~d~~~ii~F~ 315 (596)
T TIGR03788 271 PRELVFVIDTSGSMAGESIEQAKSALLLALDQL--RPGDRFNIIQFD 315 (596)
T ss_pred CceEEEEEECCCCCCCccHHHHHHHHHHHHHhC--CCCCEEEEEEEC
Confidence 67899999999422 355666667666 789988887753
No 94
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=37.64 E-value=61 Score=24.24 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCch----------hHHHHHHHhcCCCEE
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLK----------TVAVRVAKKFKATWI 128 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~----------~~I~~~a~~~~a~~v 128 (131)
.+.++.+.|...++++-+..+.- +.+ ...|+.+-+++||+|
T Consensus 113 ~i~~v~~~~~~~gl~vIlE~~l~-~~~~~~~~~~~~I~~a~ria~e~GaD~v 163 (236)
T PF01791_consen 113 EIAAVVEECHKYGLKVILEPYLR-GEEVADEKKPDLIARAARIAAELGADFV 163 (236)
T ss_dssp HHHHHHHHHHTSEEEEEEEECEC-HHHBSSTTHHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHhcCCcEEEEEEecC-chhhcccccHHHHHHHHHHHHHhCCCEE
Confidence 36678888987787776664331 223 457888999999987
No 95
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.50 E-value=84 Score=24.90 Aligned_cols=38 Identities=5% Similarity=-0.114 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-|+.++..-...+-..+-+.+..+++|.|-
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~ 89 (288)
T PRK14171 52 NKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDN 89 (288)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34678999999999877765555666889999999874
No 96
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=37.46 E-value=22 Score=27.21 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.7
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcc
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLS 32 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~ 32 (131)
.++|+|+-+|+ |-|||--+|++++
T Consensus 174 Gk~VlI~AHGN---SlRaLiK~L~~iS 197 (230)
T COG0588 174 GKNVLIVAHGN---SLRALIKYLEGIS 197 (230)
T ss_pred CCeEEEEecch---hHHHHHHHHhCCC
Confidence 58899999998 8999999999993
No 97
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=37.19 E-value=52 Score=22.86 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=19.1
Q ss_pred EEEEEeCCcccChhHHhhHhhhcccCCCCEEE
Q 036644 9 VVVIQDASRDVNSSAIGGILKNLSLKHGDSLK 40 (131)
Q Consensus 9 VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~ 40 (131)
-+|.||..++ |-+.|+-|. +++||-++
T Consensus 30 ~~i~Vd~g~D----aaD~~I~~~-~~~gDiVI 56 (130)
T PF02639_consen 30 EMIVVDSGFD----AADFYIVNH-AKPGDIVI 56 (130)
T ss_pred EEEEECCCCC----hHHHHHHHc-CCCCCEEE
Confidence 3456766655 777888888 79999643
No 98
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=36.89 E-value=50 Score=18.15 Aligned_cols=29 Identities=10% Similarity=0.058 Sum_probs=21.2
Q ss_pred EEeCCcccC-hhHHhhHhhhcccCCCCEEEEEEE
Q 036644 12 IQDASRDVN-SSAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 12 avD~Ske~S-~~Al~WaL~nv~~~~gD~l~llhv 44 (131)
-+|.| .|+ ..-|.+.++.+ +| ..|+++|-
T Consensus 11 ~~~fS-gHad~~~L~~~i~~~--~p-~~vilVHG 40 (43)
T PF07521_consen 11 QIDFS-GHADREELLEFIEQL--NP-RKVILVHG 40 (43)
T ss_dssp ESGCS-SS-BHHHHHHHHHHH--CS-SEEEEESS
T ss_pred EEeec-CCCCHHHHHHHHHhc--CC-CEEEEecC
Confidence 56788 555 66788888777 66 89999884
No 99
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.86 E-value=84 Score=24.90 Aligned_cols=38 Identities=5% Similarity=-0.032 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-|+.++..-...+-.++-+.+..+++|.|-
T Consensus 46 ~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~ 83 (287)
T PRK14181 46 MKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDP 83 (287)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44778999999999877776666667889999998863
No 100
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=36.84 E-value=66 Score=19.01 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=23.9
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.|.|++++. +-.+ -+|.-.- +++||.|-+++.+
T Consensus 28 ~~~vavavN~~--iv~~-~~~~~~~--L~dgD~Ieiv~~V 62 (65)
T PRK06488 28 GNWLATAVNGE--LVHK-EARAQFV--LHEGDRIEILSPM 62 (65)
T ss_pred CCeEEEEECCE--EcCH-HHcCccc--cCCCCEEEEEEec
Confidence 35788899886 3332 2464433 5899999999875
No 101
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.80 E-value=84 Score=24.91 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-.++-+.+..+++|.|
T Consensus 58 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 58 LKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999987776665676788999999886
No 102
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=36.76 E-value=59 Score=19.24 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=23.8
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
...|.|++++. =.++ -+|.-.. .++||+|-++..+
T Consensus 28 ~~~i~V~vNg~-~v~~--~~~~~~~--L~~gD~V~ii~~v 62 (65)
T cd00565 28 PRGVAVALNGE-IVPR--SEWASTP--LQDGDRIEIVTAV 62 (65)
T ss_pred CCcEEEEECCE-EcCH--HHcCcee--cCCCCEEEEEEec
Confidence 45788899987 2333 3454433 5899999998864
No 103
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.54 E-value=83 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-.++-+.++.+++|.|
T Consensus 53 ~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 89 (284)
T PRK14177 53 MKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLD 89 (284)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999987776654566677999999876
No 104
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.49 E-value=97 Score=22.44 Aligned_cols=14 Identities=0% Similarity=0.138 Sum_probs=6.0
Q ss_pred HHHHHhcCCCEEEe
Q 036644 117 VRVAKKFKATWIIL 130 (131)
Q Consensus 117 ~~~a~~~~a~~vVl 130 (131)
.+.+.+.+..+|.+
T Consensus 70 ~~~~~~~~ipvV~~ 83 (266)
T cd06278 70 AEECRRNGIPVVLI 83 (266)
T ss_pred HHHHhhcCCCEEEE
Confidence 34444444444443
No 105
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=36.46 E-value=80 Score=19.00 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=18.3
Q ss_pred EEEEEeCCcccChhHHhhHhhhcccCCCCEEEE
Q 036644 9 VVVIQDASRDVNSSAIGGILKNLSLKHGDSLKF 41 (131)
Q Consensus 9 VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~l 41 (131)
+++.+|+.+-.+...|.+++.+. ++|+.+.+
T Consensus 30 ~I~~Ing~~v~~~~~~~~~l~~~--~~~~~v~l 60 (79)
T cd00986 30 HIIAVDGKPFKEAEELIDYIQSK--KEGDTVKL 60 (79)
T ss_pred EEEEECCEECCCHHHHHHHHHhC--CCCCEEEE
Confidence 56677777433456677777654 35665443
No 106
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.31 E-value=90 Score=24.68 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|++++..-...+-..+-+.+..+++|.|
T Consensus 52 ~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (285)
T PRK14189 52 NKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRD 88 (285)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4477899999999987777666677788999999987
No 107
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.24 E-value=86 Score=24.79 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-|+.++..-...+-..+-+.+..+++|.|-
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~ 89 (284)
T PRK14193 52 GKHRDCAEVGITSIRRDLPADATQEELNAVIDELNADP 89 (284)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44778999999999877775555666889999999873
No 108
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.91 E-value=91 Score=24.66 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-.++-+.+..+++|.|
T Consensus 50 ~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d 86 (282)
T PRK14182 50 GKRKDCEEVGITSVEHHLPATTTQAELLALIARLNAD 86 (282)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999987776655566688999999886
No 109
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=35.90 E-value=99 Score=21.30 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEeCCcccChhH--HhhHhhhc-----ccCCCCEEEEEEE
Q 036644 9 VVVIQDASRDVNSSA--IGGILKNL-----SLKHGDSLKFLAV 44 (131)
Q Consensus 9 VvVavD~Ske~S~~A--l~WaL~nv-----~~~~gD~l~llhv 44 (131)
|++++|.|. |..+ |+|+..-+ ...++|.+-|+..
T Consensus 3 v~~vlD~S~--SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F 43 (155)
T cd01466 3 LVAVLDVSG--SMAGDKLQLVKHALRFVISSLGDADRLSIVTF 43 (155)
T ss_pred EEEEEECCC--CCCcHHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 778999994 4332 34433221 0357888777664
No 110
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=35.89 E-value=49 Score=25.90 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=26.4
Q ss_pred eEEEEEEeCCcccChhHH---------hhHhhhcccCCCCEEEEEEEe
Q 036644 7 ERVVVIQDASRDVNSSAI---------GGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al---------~WaL~nv~~~~gD~l~llhv~ 45 (131)
-=|+++||+|. |+.+- -|.|=+-+.|..|.|-+++..
T Consensus 79 ~lvvfvVDASg--SM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~ 124 (261)
T COG1240 79 NLIVFVVDASG--SMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFR 124 (261)
T ss_pred CcEEEEEeCcc--cchhHHHHHHHHHHHHHHHHHHHHccceEEEEEec
Confidence 45899999994 44333 344444457899999999986
No 111
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=35.83 E-value=91 Score=24.12 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|..+-+.++..||.+-++|-+. +. -+++|++.+||.|=|
T Consensus 113 l~~~i~~L~~~gIrvSLFiDP~--~~--qi~~A~~~Gad~VEL 151 (239)
T PF03740_consen 113 LKPVIKRLKDAGIRVSLFIDPD--PE--QIEAAKELGADRVEL 151 (239)
T ss_dssp HHHHHHHHHHTT-EEEEEE-S---HH--HHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCC--HH--HHHHHHHcCCCEEEE
Confidence 3455566677899888777653 23 459999999998743
No 112
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=35.79 E-value=1.2e+02 Score=20.70 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc--CCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF--KATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~--~a~~vVl 130 (131)
.+..++++.|+++.......|++. .|.++..+. ++|+||.
T Consensus 21 ~l~~~l~~~G~~v~~~~~v~Dd~~-~i~~~l~~~~~~~D~Vit 62 (144)
T PF00994_consen 21 FLAALLEELGIEVIRYGIVPDDPD-AIKEALRRALDRADLVIT 62 (144)
T ss_dssp HHHHHHHHTTEEEEEEEEEESSHH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeeeEEEEECCCHH-HHHHHHHhhhccCCEEEE
Confidence 457777888998876666666655 566666543 5688874
No 113
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.77 E-value=89 Score=24.70 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-||.++..-...+-..+-+.+..+++|.|
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 52 GKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999987777666666688999999988
No 114
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=35.70 E-value=87 Score=24.16 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|..+-+.++..||.+.+++-+. +. -+++|++.+|++|=|
T Consensus 112 l~~~i~~l~~~gI~VSLFiDPd--~~--qi~~A~~~GAd~VEL 150 (234)
T cd00003 112 LKPIIERLKDAGIRVSLFIDPD--PE--QIEAAKEVGADRVEL 150 (234)
T ss_pred HHHHHHHHHHCCCEEEEEeCCC--HH--HHHHHHHhCcCEEEE
Confidence 4566777788999888777553 23 459999999998743
No 115
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.54 E-value=90 Score=24.65 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-..+-+.+..+++|.|
T Consensus 50 ~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D 86 (282)
T PRK14166 50 SKAKACEECGIKSLVYHLNENTTQNELLALINTLNHD 86 (282)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999987776555566688999999887
No 116
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.50 E-value=89 Score=24.69 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-..+-+.+..+++|.|
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 51 MKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNN 87 (281)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999887776665566688999999887
No 117
>PRK07482 hypothetical protein; Provisional
Probab=35.29 E-value=78 Score=26.38 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
....++.++++|+++|+-+-+ .|..|. +.|..-.-+--...+|++++
T Consensus 239 ~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~ 287 (461)
T PRK07482 239 PAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITV 287 (461)
T ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEE
Confidence 344789999999999987766 455665 56655444556778888775
No 118
>PRK03673 hypothetical protein; Provisional
Probab=34.87 E-value=1.1e+02 Score=25.33 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc--CCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF--KATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~--~a~~vVl 130 (131)
+...|.+.|+++......||++. .|.++.++. ++|+||+
T Consensus 26 la~~L~~~G~~v~~~~~v~D~~~-~i~~~l~~a~~~~DlVI~ 66 (396)
T PRK03673 26 LADFFFHQGLPLSRRNTVGDNLD-ALVAILRERSQHADVLIV 66 (396)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHH-HHHHHHHHHhccCCEEEE
Confidence 35567789999998889998877 576775543 5788875
No 119
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.71 E-value=1.1e+02 Score=20.30 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=26.0
Q ss_pred HHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 92 SKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 92 ~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
...+...|+.+++... .+.+. ..+.|++.++.++|+
T Consensus 48 a~~LR~~gi~v~~d~~--~sl~k-qlk~A~k~g~~~~ii 83 (121)
T cd00858 48 SEELRELGFSVKYDDS--GSIGR-RYARQDEIGTPFCVT 83 (121)
T ss_pred HHHHHHCCCEEEEeCC--CCHHH-HHHHhHhcCCCEEEE
Confidence 3344567888887665 46674 559999999998775
No 120
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=34.68 E-value=2e+02 Score=21.75 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=25.5
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
..+|+|++-|-.+ |.-++.++.+ .|..++.+|+.
T Consensus 12 ~~~vlVa~SGGvD-Ss~ll~la~~-----~g~~v~av~~~ 45 (252)
T TIGR00268 12 FKKVLIAYSGGVD-SSLLAAVCSD-----AGTEVLAITVV 45 (252)
T ss_pred cCCEEEEecCcHH-HHHHHHHHHH-----hCCCEEEEEec
Confidence 4679999999876 7777766653 27788888884
No 121
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=34.63 E-value=46 Score=25.09 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=21.4
Q ss_pred ceEEEEEEeCC--cccChhHHhhHhhhcccCCCCEEEE
Q 036644 6 CERVVVIQDAS--RDVNSSAIGGILKNLSLKHGDSLKF 41 (131)
Q Consensus 6 ~r~VvVavD~S--ke~S~~Al~WaL~nv~~~~gD~l~l 41 (131)
+++++|..|+| .+|..+.|++ +..+ +.+||-+++
T Consensus 110 ~~~vlVilDs~H~~~hvl~eL~~-y~pl-v~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEHVLAELEA-YAPL-VSPGSYLIV 145 (206)
T ss_dssp -SSEEEEESS----SSHHHHHHH-HHHT---TT-EEEE
T ss_pred CCceEEEECCCccHHHHHHHHHH-hCcc-CCCCCEEEE
Confidence 57888888888 3577889999 4577 789995543
No 122
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.55 E-value=78 Score=21.02 Aligned_cols=38 Identities=3% Similarity=0.127 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 89 EQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 89 ~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++.|+++|+++++.-.. ..+ +-+.....++|+|++
T Consensus 19 ~k~k~~~~e~gi~~~i~a~~---~~e-~~~~~~~~~~DvIll 56 (104)
T PRK09590 19 KKTTEYLKEQGKDIEVDAIT---ATE-GEKAIAAAEYDLYLV 56 (104)
T ss_pred HHHHHHHHHCCCceEEEEec---HHH-HHHhhccCCCCEEEE
Confidence 35577888888876532222 221 222333445777664
No 123
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.40 E-value=95 Score=24.66 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-|++++..-...+-.++-+.+..+++|.|-
T Consensus 51 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 88 (295)
T PRK14174 51 NKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDP 88 (295)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44778999999999877776666767889999999883
No 124
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=34.28 E-value=1.4e+02 Score=22.70 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCeEEEEEE-----ecCCchhHH---HHHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVR-----PGVSLKTVA---VRVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~-----~G~~~~~~I---~~~a~~~~a~~vV 129 (131)
+..+.+.|.+.|+.+.+.+. .|....+.+ ++.+.+.+||+|=
T Consensus 125 ~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyik 174 (258)
T TIGR01949 125 LGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVK 174 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEe
Confidence 66788899999998877554 222111222 5777889999874
No 125
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=33.79 E-value=56 Score=19.73 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=19.8
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEE
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llh 43 (131)
.+.+.|++|+. -.+ .+.. .++||+|.|+.
T Consensus 47 ~~~~~v~vNg~-~v~-------~~~~-l~~gD~v~i~p 75 (80)
T cd00754 47 LARVRIAVNGE-YVR-------LDTP-LKDGDEVAIIP 75 (80)
T ss_pred hhcEEEEECCe-EcC-------CCcc-cCCCCEEEEeC
Confidence 45778888887 333 2334 78999988764
No 126
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.54 E-value=1e+02 Score=24.55 Aligned_cols=38 Identities=8% Similarity=-0.049 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-||+++..-...+-.++-+.+..+++|.|-
T Consensus 53 ~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~ 90 (301)
T PRK14194 53 NKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADP 90 (301)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 44778999999999877766656667889999998873
No 127
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.51 E-value=1e+02 Score=24.40 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-..+-+.+..+++|.|
T Consensus 53 ~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 53 SKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999988777655666688999999877
No 128
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.20 E-value=82 Score=26.63 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchh---HHHHHHHhcCCCEEEeC
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKT---VAVRVAKKFKATWIILD 131 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~---~I~~~a~~~~a~~vVlD 131 (131)
-+++++.++++-+|.+--. ..+.+|=+ ..++.|++.+.|+||+|
T Consensus 143 A~eQL~~La~q~~v~~f~~-~~~~~Pv~Iak~al~~ak~~~~DvvIvD 189 (451)
T COG0541 143 AIEQLKQLAEQVGVPFFGS-GTEKDPVEIAKAALEKAKEEGYDVVIVD 189 (451)
T ss_pred HHHHHHHHHHHcCCceecC-CCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4678899999888877644 33333321 24588899999999998
No 129
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.15 E-value=1e+02 Score=24.55 Aligned_cols=38 Identities=11% Similarity=-0.080 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-|++++..-...+-..+-+.+..+++|.|-
T Consensus 51 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 88 (297)
T PRK14167 51 MKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADE 88 (297)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44778999999999877776656666889999998773
No 130
>PRK03670 competence damage-inducible protein A; Provisional
Probab=32.91 E-value=1.3e+02 Score=23.15 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=28.1
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc---CCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF---KATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~---~a~~vVl 130 (131)
+.+.|.+.|+.+......+|++. .|.++.++. .+|+||+
T Consensus 25 la~~L~~~G~~v~~~~iV~Dd~~-~I~~~l~~a~~~~~DlVIt 66 (252)
T PRK03670 25 IAQKLTEKGYWVRRITTVGDDVE-EIKSVVLEILSRKPEVLVI 66 (252)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHH-HHHHHHHHHhhCCCCEEEE
Confidence 45567788999987777888766 466776553 4688875
No 131
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=32.85 E-value=1e+02 Score=25.70 Aligned_cols=46 Identities=9% Similarity=0.150 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 85 NVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 85 ~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
...++.++++|+++|+-+-+ .|+.|. +.|..-.-+--...+|++++
T Consensus 251 ~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~ 298 (464)
T PRK06938 251 IEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVL 298 (464)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEe
Confidence 44788999999999987765 455655 66765545556778888875
No 132
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.83 E-value=1e+02 Score=24.23 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|++++..-...+-..+-+.+..+++|.|
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 52 NQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467899999999987777666666688999999876
No 133
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=32.81 E-value=85 Score=23.41 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=24.1
Q ss_pred ceEEEEEE-eCCcccC-hhHHhhHhhhcccC---CCCEEEEEEEe
Q 036644 6 CERVVVIQ-DASRDVN-SSAIGGILKNLSLK---HGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVav-D~Ske~S-~~Al~WaL~nv~~~---~gD~l~llhv~ 45 (131)
.++|+|++ |.+|-.. ..-|.+-++.+ .. +++.++++-.+
T Consensus 54 ~~~V~Ivv~D~TRp~p~~~il~~ll~~L-~~~Gv~~~~i~ii~A~ 97 (204)
T PF09861_consen 54 GKRVAIVVDDITRPTPSDLILPALLEEL-EEAGVKDEDITIIIAL 97 (204)
T ss_dssp -SEEEEEEE-TTS---HHHHHHHHHHHH-HT-T-TT-EEEEEEE-
T ss_pred CCeEEEEeCCCCCCCCHHHHHHHHHHHH-HhcCCCccCEEEEEeC
Confidence 47888888 8887522 46677888777 55 55678888764
No 134
>PRK05965 hypothetical protein; Provisional
Probab=32.79 E-value=85 Score=26.14 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
....|+.++++|+++|+-+-+ .|..|. +.|..-.-+.-....|++++
T Consensus 234 ~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~ 282 (459)
T PRK05965 234 PKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTV 282 (459)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEe
Confidence 344788999999999987765 455565 56765555556677888775
No 135
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.64 E-value=1e+02 Score=24.45 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|++++..-...+...+-+.+..+++|.|
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (293)
T PRK14185 51 NKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQD 87 (293)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999987777666677788999999876
No 136
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=32.59 E-value=1.4e+02 Score=19.45 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+..+.+.+|.++. ..-...+++ -+++.+.+.++++|.+
T Consensus 19 ~~~~l~~~G~~V~-~lg~~~~~~-~l~~~~~~~~pdvV~i 56 (119)
T cd02067 19 VARALRDAGFEVI-DLGVDVPPE-EIVEAAKEEDADAIGL 56 (119)
T ss_pred HHHHHHHCCCEEE-ECCCCCCHH-HHHHHHHHcCCCEEEE
Confidence 3445667787662 222344445 5778999999988875
No 137
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=32.23 E-value=81 Score=18.57 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=23.6
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
++.+.|++++. -.++ -+|.-. . .++||.|-+++.+
T Consensus 27 ~~~v~v~vN~~-iv~~--~~~~~~-~-L~~gD~veii~~V 61 (64)
T TIGR01683 27 PRRVAVAVNGE-IVPR--SEWDDT-I-LKEGDRIEIVTFV 61 (64)
T ss_pred CCeEEEEECCE-EcCH--HHcCce-e-cCCCCEEEEEEec
Confidence 46788899886 2232 235332 3 6899999999875
No 138
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=32.14 E-value=1.7e+02 Score=21.23 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCeEEEEEEecCCc-hhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSL-KTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~-~~~I~~~a~~~~a~~vVl 130 (131)
.+.+.|++.|.++.+.....++. ...+++...+.++|-||+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii 61 (260)
T cd06286 20 GIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLIL 61 (260)
T ss_pred HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 44556666666665443322221 113445566666666654
No 139
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.10 E-value=1.1e+02 Score=24.34 Aligned_cols=38 Identities=5% Similarity=0.035 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-|+.++..-...+-..+-+.+..+++|.|-
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~ 89 (294)
T PRK14187 52 NKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDD 89 (294)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44778999999999877776656667889999998873
No 140
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.96 E-value=1.1e+02 Score=24.35 Aligned_cols=38 Identities=5% Similarity=-0.125 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-|++++..-...+-.++-+.++.+++|.|-
T Consensus 53 ~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~ 90 (297)
T PRK14168 53 LKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDD 90 (297)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44778999999998777665556667889999998873
No 141
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=31.88 E-value=1.6e+02 Score=23.43 Aligned_cols=40 Identities=20% Similarity=0.094 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhH---HHHHHHhcCCCEEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTV---AVRVAKKFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~---I~~~a~~~~a~~vV 129 (131)
++.+.+++.++.+...+..|.+.-+. +++.+++.++|.||
T Consensus 40 ~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~II 82 (349)
T cd08550 40 RFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVII 82 (349)
T ss_pred HHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 45556666677666555556544332 44566677888876
No 142
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=31.80 E-value=53 Score=25.99 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=19.6
Q ss_pred ChhHHhhHhhhcccCCCCEEEEEEEec
Q 036644 20 NSSAIGGILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 20 S~~Al~WaL~nv~~~~gD~l~llhv~~ 46 (131)
+..|++||| .+ .+-++.++++|--+
T Consensus 152 G~sAve~Al-~L-~~~a~~Vtlv~r~~ 176 (305)
T COG0492 152 GDSAVEEAL-YL-SKIAKKVTLVHRRD 176 (305)
T ss_pred CHHHHHHHH-HH-HHhcCeEEEEecCc
Confidence 456999999 66 57788899999643
No 143
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=31.70 E-value=1.1e+02 Score=23.65 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vV 129 (131)
|..+-+.++..||.+.+++-+. +. .| ++|++.+|+.|=
T Consensus 112 l~~~i~~l~~~gI~VSLFiDP~--~~-qi-~~A~~~GAd~VE 149 (237)
T TIGR00559 112 LCELVKRFHAAGIEVSLFIDAD--KD-QI-SAAAEVGADRIE 149 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCCC--HH-HH-HHHHHhCcCEEE
Confidence 4455667778999988776442 23 34 999999999874
No 144
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=31.66 E-value=90 Score=19.01 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=24.2
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEE
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llh 43 (131)
-+++++|+-+=.+...|.-++.+ .++|+.+.|.-
T Consensus 36 D~I~~ing~~v~~~~~~~~~l~~--~~~g~~v~l~v 69 (82)
T PF13180_consen 36 DIILAINGKPVNSSEDLVNILSK--GKPGDTVTLTV 69 (82)
T ss_dssp EEEEEETTEESSSHHHHHHHHHC--SSTTSEEEEEE
T ss_pred cEEEEECCEEcCCHHHHHHHHHh--CCCCCEEEEEE
Confidence 47789999854478888888864 47888766543
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=31.54 E-value=2e+02 Score=23.08 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCeEEEEEEe-----------cCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRP-----------GVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~-----------G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|+.+..+|+..|+++...+.. |...=+-|-+.++..+||.||+|
T Consensus 19 ~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~ 73 (351)
T TIGR03156 19 LEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFD 73 (351)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEEC
Confidence 556788898888777554332 21111235567778999999987
No 146
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=31.41 E-value=37 Score=27.90 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred hhHHhhHhhhcccCCCC--EEEEEEE
Q 036644 21 SSAIGGILKNLSLKHGD--SLKFLAV 44 (131)
Q Consensus 21 ~~Al~WaL~nv~~~~gD--~l~llhv 44 (131)
..||+|--+|++.-.|| .|+|.+-
T Consensus 190 ~~AL~WV~~nI~~FGGDp~~VTl~G~ 215 (535)
T PF00135_consen 190 RLALKWVQDNIAAFGGDPDNVTLFGQ 215 (535)
T ss_dssp HHHHHHHHHHGGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHhhhhhcccCCcceeeeee
Confidence 57999999999777888 6888763
No 147
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=31.26 E-value=92 Score=25.15 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCeEEE-EEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEI-EVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~-~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
..++++.++|+++++-+-. .++.|-+.|..-.-..-....|++++
T Consensus 183 ~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~ 228 (364)
T PRK04013 183 EFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTM 228 (364)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEe
Confidence 3588999999999987654 45567777765544556778888775
No 148
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=31.25 E-value=2.4e+02 Score=21.59 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
...+..+|++.|+++- .=.||-++.+.+ ++.-+.+-+++|+
T Consensus 101 k~rve~lc~~lGl~~~-~PLWg~d~~ell-~e~~~~Gf~~~Iv 141 (223)
T COG2102 101 KERVERLCEELGLKVY-APLWGRDPEELL-EEMVEAGFEAIIV 141 (223)
T ss_pred HHHHHHHHHHhCCEEe-ecccCCCHHHHH-HHHHHcCCeEEEE
Confidence 5588999999998776 566888888644 6666666666653
No 149
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=30.94 E-value=33 Score=28.43 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=21.0
Q ss_pred eCCcccChhHHhhHhhhcccCCCCEEEEEEE
Q 036644 14 DASRDVNSSAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 14 D~Ske~S~~Al~WaL~nv~~~~gD~l~llhv 44 (131)
++|+.+.++||+||++| ....|+|+|=
T Consensus 194 ~~s~Rlvr~ai~yAi~~----~r~~VtlvhK 220 (407)
T COG0538 194 EGSIRLVRAAIEYAIEN----KRKSVTLVHK 220 (407)
T ss_pred hhhHHHHHHHHHHHHHc----CCceEEEEec
Confidence 56655788999999976 3368999995
No 150
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=30.88 E-value=1.9e+02 Score=20.68 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=26.1
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHh--cCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK--FKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~--~~a~~vVl 130 (131)
+...+.+.|+++......+|.+. .|.++.++ ..+|+||+
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd~~-~I~~~l~~~~~~~dlVIt 64 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDDED-RIAEALRRASERADLVIT 64 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHH-HHHHHHHHHHhCCCEEEE
Confidence 35566678998887777787766 35455444 26788874
No 151
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=30.83 E-value=2.2e+02 Score=24.14 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=21.5
Q ss_pred cChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCC
Q 036644 19 VNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMG 53 (131)
Q Consensus 19 ~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~ 53 (131)
.+..||+||++.- ...|-.|-=|-+.. +++|+|
T Consensus 208 itv~alE~A~~~A-~~~~~kVkGvlitN-PsNPLG 240 (471)
T KOG0256|consen 208 ITVEALEAALNQA-RKLGLKVKGVLITN-PSNPLG 240 (471)
T ss_pred ccHHHHHHHHHHH-HHhCCceeEEEEeC-CCCCCC
Confidence 4589999999877 66666655444432 245655
No 152
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.72 E-value=1.2e+02 Score=23.93 Aligned_cols=37 Identities=3% Similarity=-0.009 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-.++-+.+..+++|.|
T Consensus 50 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 86 (282)
T PRK14169 50 NKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHD 86 (282)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999987776656666788999999886
No 153
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=30.66 E-value=1.2e+02 Score=24.82 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
+.+...+.|++-|++++..-...+-.++-+.+..+++|.|
T Consensus 103 Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D 142 (345)
T PLN02897 103 YVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNED 142 (345)
T ss_pred HHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556778899999999877776665666688999999887
No 154
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.65 E-value=1.2e+02 Score=24.13 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATW 127 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~ 127 (131)
...+.|++-||+++..-...+-..+-+.+..+++|.|-
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 89 (297)
T PRK14186 52 NKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDE 89 (297)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44778999999999877765555666779999998763
No 155
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=30.59 E-value=1.7e+02 Score=19.77 Aligned_cols=39 Identities=8% Similarity=-0.080 Sum_probs=23.6
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc--CCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF--KATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~--~a~~vVl 130 (131)
+..++++.|.++......+|++. .|-++.++. ++|+||+
T Consensus 24 l~~~l~~~G~~v~~~~~v~Dd~~-~i~~~i~~~~~~~Dlvit 64 (133)
T cd00758 24 LEALLEDLGCEVIYAGVVPDDAD-SIRAALIEASREADLVLT 64 (133)
T ss_pred HHHHHHHCCCEEEEeeecCCCHH-HHHHHHHHHHhcCCEEEE
Confidence 35566777877766655666655 344544432 3788774
No 156
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=30.53 E-value=1.2e+02 Score=24.19 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-..+-+.++.+++|.|
T Consensus 59 ~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 59 MKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4467899999999987776555566677999999887
No 157
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.51 E-value=1.2e+02 Score=23.94 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|++++..-...+-.++-+.+..+++|.|
T Consensus 52 ~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 52 NKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467899999999987776655666788999999876
No 158
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=30.50 E-value=1.4e+02 Score=24.55 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCeEEEEEE-ecCCchhHHH---HHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVR-PGVSLKTVAV---RVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~-~G~~~~~~I~---~~a~~~~a~~vV 129 (131)
++++.+..++.+|.+.++-. .++|+-+.+. +.+++.++|.||
T Consensus 46 ~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iI 91 (377)
T COG1454 46 LDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTII 91 (377)
T ss_pred HHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 44556667777877776555 3667666555 778888999887
No 159
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.38 E-value=1.2e+02 Score=23.89 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-..-+..++-+.+..+++|.|
T Consensus 51 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 51 SKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 87 (282)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4467899999999987776555566688999999887
No 160
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=30.38 E-value=73 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=19.0
Q ss_pred cChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 19 VNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 19 ~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.-..|++++.++=..++||.+++++-.
T Consensus 76 ~~~~a~~~~~~~g~~~~gd~vVv~~g~ 102 (117)
T PF02887_consen 76 LIAEALEYAKERGLLKPGDKVVVVAGM 102 (117)
T ss_dssp HHHHHHHHHHHTTSS-TTSEEEEEEES
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEeCC
Confidence 345677777776327999999999875
No 161
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=30.36 E-value=83 Score=21.38 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=29.6
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEec
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~ 46 (131)
..+|+|+.|.. ..|....++..+-+ ...|=.++.++..+
T Consensus 40 ~~~VvVg~D~R-~~s~~~~~~~~~~l-~~~G~~V~~~g~~~ 78 (137)
T PF02878_consen 40 GSRVVVGRDTR-PSSPMLAKALAAGL-RANGVDVIDIGLVP 78 (137)
T ss_dssp SSEEEEEE-SS-TTHHHHHHHHHHHH-HHTTEEEEEEEEB-
T ss_pred CCeEEEEEccc-CCHHHHHHHHHHHH-hhcccccccccccC
Confidence 67999999998 56887777777777 67787888888553
No 162
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=30.31 E-value=59 Score=23.36 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
.+..|.+++||+++||
T Consensus 79 aIALA~e~~ad~Ll~D 94 (157)
T COG2405 79 AIALALELKADLLLMD 94 (157)
T ss_pred HHHHHHHcCCCeeeec
Confidence 4488999999999998
No 163
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=30.24 E-value=1.1e+02 Score=18.48 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=20.6
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEE
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKF 41 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~l 41 (131)
-+++.+|+.+-.+...|.+++.+. ++|+.+.+
T Consensus 32 DiI~~Ing~~v~~~~d~~~~l~~~--~~g~~v~l 63 (79)
T cd00991 32 DVIYSINGTPITTLEDFMEALKPT--KPGEVITV 63 (79)
T ss_pred CEEEEECCEEcCCHHHHHHHHhcC--CCCCEEEE
Confidence 367788887444566777777654 46776443
No 164
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.19 E-value=1.3e+02 Score=18.40 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=24.8
Q ss_pred HHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 93 KLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 93 ~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
..+...|+.+++... +.+.+..+ +.|++.++.++|+
T Consensus 25 ~~Lr~~g~~v~~d~~-~~~l~k~i-~~a~~~g~~~~ii 60 (94)
T cd00861 25 AELQAAGVDVLLDDR-NERPGVKF-ADADLIGIPYRIV 60 (94)
T ss_pred HHHHHCCCEEEEECC-CCCcccch-hHHHhcCCCEEEE
Confidence 334456888876544 44667544 9999999998774
No 165
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=29.98 E-value=46 Score=26.26 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=14.5
Q ss_pred EEEEeCCcccChhHHhhHhhhcc
Q 036644 10 VVIQDASRDVNSSAIGGILKNLS 32 (131)
Q Consensus 10 vVavD~Ske~S~~Al~WaL~nv~ 32 (131)
++.||.| ..||+||-+|++
T Consensus 149 v~~VD~S----~~al~~a~~N~~ 167 (286)
T PF10672_consen 149 VVSVDSS----KRALEWAKENAA 167 (286)
T ss_dssp EEEEES-----HHHHHHHHHHHH
T ss_pred EEEEeCC----HHHHHHHHHHHH
Confidence 4588876 469999999984
No 166
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.93 E-value=1.6e+02 Score=21.48 Aligned_cols=14 Identities=0% Similarity=0.197 Sum_probs=6.5
Q ss_pred HHHHHHHhcCCeEE
Q 036644 90 QISKLCQAENIEFE 103 (131)
Q Consensus 90 ~~~~~c~~~~V~~~ 103 (131)
.+.+.|++.|+.+.
T Consensus 20 ~i~~~~~~~g~~~~ 33 (267)
T cd06322 20 AMKEEAKKQKVNLI 33 (267)
T ss_pred HHHHHHHhcCCEEE
Confidence 34444555554443
No 167
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.84 E-value=1.3e+02 Score=23.90 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...+.|++-|+.++..-...+-..+-+.+..+++|.|
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 52 SKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999877666555566678999999887
No 168
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=29.57 E-value=19 Score=22.98 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=11.5
Q ss_pred hhHHhhHhhhcc----cCCCCEEEE
Q 036644 21 SSAIGGILKNLS----LKHGDSLKF 41 (131)
Q Consensus 21 ~~Al~WaL~nv~----~~~gD~l~l 41 (131)
-.+|.|||++.. -..||.+.+
T Consensus 55 a~Gl~~YLk~~c~~~isW~g~~~~l 79 (86)
T PF12971_consen 55 ASGLNWYLKYYCHVHISWNGDQLEL 79 (86)
T ss_dssp HHHHHHHHHHHS--B--TT--B---
T ss_pred HHHHHHHHHHHhCceEeecCCcccC
Confidence 578999999982 135776554
No 169
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=29.57 E-value=66 Score=20.30 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=22.2
Q ss_pred EEEEeCCcccChhHHhhHhhhc-ccCCCCEEEEEEE
Q 036644 10 VVIQDASRDVNSSAIGGILKNL-SLKHGDSLKFLAV 44 (131)
Q Consensus 10 vVavD~Ske~S~~Al~WaL~nv-~~~~gD~l~llhv 44 (131)
+++||-|. ..++.|-++. ....++.+.+++.
T Consensus 28 v~gvD~s~----~~~~~a~~~~~~~~~~~~i~~~~~ 59 (112)
T PF12847_consen 28 VVGVDISP----EMLEIARERAAEEGLSDRITFVQG 59 (112)
T ss_dssp EEEEESSH----HHHHHHHHHHHHTTTTTTEEEEES
T ss_pred EEEEeCCH----HHHHHHHHHHHhcCCCCCeEEEEC
Confidence 67998874 4777777777 2356678888875
No 170
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=29.56 E-value=75 Score=24.21 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=15.9
Q ss_pred ceEEEEEEeCCcccChhHHhhHhh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILK 29 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~ 29 (131)
-++|++++|.+.+ .+++|.+
T Consensus 36 v~~I~~alD~t~~----vi~~Ai~ 55 (249)
T TIGR00486 36 VKKVVVAVDASES----VADEAVR 55 (249)
T ss_pred cCEEEEEecCCHH----HHHHHHH
Confidence 6899999998744 7777775
No 171
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=29.46 E-value=1.9e+02 Score=21.22 Aligned_cols=14 Identities=0% Similarity=0.024 Sum_probs=6.6
Q ss_pred HHHHHhcCCCEEEe
Q 036644 117 VRVAKKFKATWIIL 130 (131)
Q Consensus 117 ~~~a~~~~a~~vVl 130 (131)
.+.+.+.+.-+|.+
T Consensus 80 ~~~~~~~~ipvV~~ 93 (275)
T cd06295 80 PERLAETGLPFVVW 93 (275)
T ss_pred HHHHHhCCCCEEEE
Confidence 45555544444443
No 172
>COG2262 HflX GTPases [General function prediction only]
Probab=29.42 E-value=1.2e+02 Score=25.45 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCeEEE-------------EEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEI-------------EVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~-------------~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
++.+..+|+..|.++.- .|-.| +.. -|-+.++..+||.||+|
T Consensus 22 leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~G-K~e-Ei~~~v~~~~ad~VIf~ 76 (411)
T COG2262 22 LEELAELAETAGYEVVEVVTQKRERPDPKTYIGSG-KLE-EIAEAVEETGADLVIFD 76 (411)
T ss_pred HHHHHHHHHHcCCeEeeeEEEeccCCCcceecCcc-hHH-HHHHHHHhcCCCEEEEC
Confidence 34556677776665532 23333 234 36688999999999987
No 173
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=29.28 E-value=1.7e+02 Score=22.51 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=26.5
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
+++..++.+..+-+.+..+++ .++|.+-..+-|+|++|
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp---~~~e~~a~~G~D~v~iD 47 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANP---ITTEVLGLAGFDWLVLD 47 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCc---HHHHHHHhcCCCEEEEc
Confidence 444554555555555555543 68899999999999998
No 174
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=29.28 E-value=93 Score=19.79 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+++.+++.|+.+.+...-.......+ ..-+--.||+||+
T Consensus 19 ~L~~aA~~~G~~i~VE~qg~~g~~~~l-t~~~i~~Ad~vii 58 (85)
T TIGR00829 19 ALEKAAKKRGWEVKVETQGSVGAQNAL-TAEDIAAADGVIL 58 (85)
T ss_pred HHHHHHHHCCCeEEEEecCCcCccCCC-CHHHHHhCCEEEE
Confidence 557788888988887776433233222 3333445666664
No 175
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=29.15 E-value=1.2e+02 Score=21.43 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=21.7
Q ss_pred EEEEEeCCcccChh-HHhhH-------hhhcccCCCCEEEEEEE
Q 036644 9 VVVIQDASRDVNSS-AIGGI-------LKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 9 VvVavD~Ske~S~~-Al~Wa-------L~nv~~~~gD~l~llhv 44 (131)
|++.+|.|...... -|+++ +... .+++|.+-++..
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~-~~~~d~v~lv~F 45 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDA-YQRRDKVALIAF 45 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHh-hcCCCEEEEEEE
Confidence 68899999533222 34443 3333 468898888775
No 176
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=29.09 E-value=86 Score=20.02 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+++.|++.|+.+.+...-.......+ ..-+--.||+||+
T Consensus 5 aL~~aA~~~G~~i~VEtqg~~g~~~~l-t~~~i~~Ad~VIi 44 (88)
T PRK10474 5 ALESAAKAKGWEVKVETQGSIGLENEL-TAEDVASADMVIL 44 (88)
T ss_pred HHHHHHHHCCCeEEEEecCCcCcCCCC-CHHHHHhCCEEEE
Confidence 567888899988887776433233222 2233345666654
No 177
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=29.05 E-value=9.4 Score=22.04 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=11.8
Q ss_pred ccChhHHhhHhhhc
Q 036644 18 DVNSSAIGGILKNL 31 (131)
Q Consensus 18 e~S~~Al~WaL~nv 31 (131)
.+|..+-+||++||
T Consensus 35 ~Ft~e~A~YAv~~l 48 (48)
T PF07553_consen 35 GFTEEEAQYAVDHL 48 (48)
T ss_pred CCCHHHHHHHHHcC
Confidence 58888999999886
No 178
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=28.94 E-value=2e+02 Score=21.00 Aligned_cols=14 Identities=0% Similarity=-0.007 Sum_probs=6.5
Q ss_pred HHHHHhcCCCEEEe
Q 036644 117 VRVAKKFKATWIIL 130 (131)
Q Consensus 117 ~~~a~~~~a~~vVl 130 (131)
++.+.+.+.-.|++
T Consensus 71 ~~~~~~~~ipvV~~ 84 (268)
T cd06270 71 LIELAAQVPPLVLI 84 (268)
T ss_pred HHHHhhCCCCEEEE
Confidence 34444444444444
No 179
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=28.90 E-value=2.2e+02 Score=20.88 Aligned_cols=41 Identities=5% Similarity=0.010 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCeEEEEEEecCC----chhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVS----LKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~----~~~~I~~~a~~~~a~~vVl 130 (131)
...++|+++||++...-...-+ ..+.+.+..++.++|++|+
T Consensus 41 ~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~ 85 (190)
T TIGR00639 41 YGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVL 85 (190)
T ss_pred hHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEE
Confidence 4467889999987641111111 1235678899999999985
No 180
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=28.82 E-value=35 Score=20.48 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=22.9
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEE
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv 44 (131)
+.+.|++|+. - ... +|.-.. +++||+|.|+..
T Consensus 42 ~~~~v~vN~~-~-v~~--~~~~~~--l~~gD~V~i~pp 73 (77)
T PF02597_consen 42 DRVAVAVNGE-I-VPD--DGLDTP--LKDGDEVAILPP 73 (77)
T ss_dssp TTEEEEETTE-E-EGG--GTTTSB--EETTEEEEEEES
T ss_pred ccEEEEECCE-E-cCC--ccCCcC--cCCCCEEEEECC
Confidence 6789999997 3 444 564433 589999999764
No 181
>PRK01215 competence damage-inducible protein A; Provisional
Probab=28.72 E-value=1.6e+02 Score=22.80 Aligned_cols=39 Identities=8% Similarity=-0.041 Sum_probs=27.1
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc--CCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF--KATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~--~a~~vVl 130 (131)
+.+.+++.|+++......+|++. .|.++.++. ++|+||+
T Consensus 28 l~~~L~~~G~~v~~~~~v~Dd~~-~I~~~l~~a~~~~DlVIt 68 (264)
T PRK01215 28 IARRLTYLGYTVRRITVVMDDIE-EIVSAFREAIDRADVVVS 68 (264)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHH-HHHHHHHHHhcCCCEEEE
Confidence 45667788999988888888876 355554432 4688875
No 182
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=28.64 E-value=73 Score=18.62 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=21.8
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
+.+.|++++. =..+. +|.-. . +++||+|-+++.+
T Consensus 29 ~~~~v~vN~~-~v~~~--~~~~~-~-L~~gD~vei~~~v 62 (65)
T PRK06944 29 PPFAVAVNGD-FVART--QHAAR-A-LAAGDRLDLVQPV 62 (65)
T ss_pred CCeEEEECCE-EcCch--hcccc-c-CCCCCEEEEEeec
Confidence 4577888886 22222 25433 3 5899999998864
No 183
>PRK10867 signal recognition particle protein; Provisional
Probab=28.57 E-value=1e+02 Score=25.79 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHH---HHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVA---VRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I---~~~a~~~~a~~vVlD 131 (131)
.++++.++++.+|.+...- .+.+|.+.. ++.++..+.|+||+|
T Consensus 145 ~eQL~~~a~~~gv~v~~~~-~~~dp~~i~~~a~~~a~~~~~DvVIID 190 (433)
T PRK10867 145 IEQLKTLGEQIGVPVFPSG-DGQDPVDIAKAALEEAKENGYDVVIVD 190 (433)
T ss_pred HHHHHHHHhhcCCeEEecC-CCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5577788888888765322 233444332 245566788999998
No 184
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=28.32 E-value=79 Score=22.75 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=23.7
Q ss_pred ceEEEEEEeCCcccChhH----------HhhHhhhcc-----cCCCCEEEEEEE
Q 036644 6 CERVVVIQDASRDVNSSA----------IGGILKNLS-----LKHGDSLKFLAV 44 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~A----------l~WaL~nv~-----~~~gD~l~llhv 44 (131)
-|.+++++|.| . |..| -.-++..+. .+|+|++-|+..
T Consensus 3 ~r~ivi~lD~S-~-SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f 54 (183)
T cd01453 3 MRHLIIVIDCS-R-SMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISI 54 (183)
T ss_pred eeEEEEEEECc-H-HHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEE
Confidence 37899999999 3 5442 234444441 258898877765
No 185
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.28 E-value=2.2e+02 Score=21.49 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
-+-+.|+..+++.++..+..+++.....+-|++.+....++|
T Consensus 16 aiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~ 57 (200)
T COG0299 16 AIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLD 57 (200)
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEec
Confidence 345556555567777777767777778899999999887765
No 186
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=28.21 E-value=1.2e+02 Score=20.70 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
-+...+++.++..+=.++.||.+.+ ++.|++.+...|-++
T Consensus 106 ~~~~~~~~~~~~~~e~i~IGDs~~D--i~~A~~~Gi~~v~i~ 145 (147)
T TIGR01656 106 LILEALKRLGVDASRSLVVGDRLRD--LQAARNAGLAAVLLV 145 (147)
T ss_pred HHHHHHHHcCCChHHEEEEcCCHHH--HHHHHHCCCCEEEec
Confidence 4566677778877767888987443 589999998887654
No 187
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=28.20 E-value=1.4e+02 Score=19.32 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=23.1
Q ss_pred EEEEEEeCCccc-------ChhHHhhHhhhcccC--CCCEEEEEEE
Q 036644 8 RVVVIQDASRDV-------NSSAIGGILKNLSLK--HGDSLKFLAV 44 (131)
Q Consensus 8 ~VvVavD~Ske~-------S~~Al~WaL~nv~~~--~gD~l~llhv 44 (131)
.|++++|.|... .+.++.+.+..+ .. +++.+-++..
T Consensus 2 ~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~~f 46 (161)
T cd00198 2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSL-SASPPGDRVGLVTF 46 (161)
T ss_pred cEEEEEeCCCCcCcchHHHHHHHHHHHHHhc-ccCCCCcEEEEEEe
Confidence 578999999422 135666666666 33 4677776664
No 188
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=28.17 E-value=54 Score=26.48 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=17.2
Q ss_pred hHhhhcccCCCCEEEEEEEec
Q 036644 26 GILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 26 WaL~nv~~~~gD~l~llhv~~ 46 (131)
|.|-|+ .++||.|.-.+.-.
T Consensus 26 w~l~nl-i~~GD~V~~~T~Rk 45 (351)
T TIGR00111 26 WHLYQI-IEKGDVEFAFTKRR 45 (351)
T ss_pred HHHHHh-CCCCCEEEEEEEEE
Confidence 999999 99999988876553
No 189
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=28.09 E-value=1e+02 Score=25.67 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
....|+.++++|+++|+-+-+ .|+.|. +.|..-.-+--...+|++++
T Consensus 241 ~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~ 289 (453)
T PRK06943 241 DPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCL 289 (453)
T ss_pred CHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEee
Confidence 444789999999999987766 444555 56654444445677887775
No 190
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=27.90 E-value=2e+02 Score=20.46 Aligned_cols=39 Identities=3% Similarity=-0.110 Sum_probs=25.4
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHh----cCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK----FKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~----~~a~~vVl 130 (131)
+....++.|+++...-...|++. .|.++.++ .++|+||+
T Consensus 27 l~~~L~~~G~~v~~~~iv~Dd~~-~i~~~l~~~~~~~~~DlVIt 69 (163)
T TIGR02667 27 LVERLTEAGHRLADRAIVKDDIY-QIRAQVSAWIADPDVQVILI 69 (163)
T ss_pred HHHHHHHCCCeEEEEEEcCCCHH-HHHHHHHHHHhcCCCCEEEE
Confidence 35556677888776666666655 45555544 46898875
No 191
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=27.87 E-value=74 Score=25.48 Aligned_cols=28 Identities=36% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 104 IEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 104 ~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
+.|.+|.++-..+-.+.++.++|+||||
T Consensus 108 ~~V~V~~dR~~~~~~~~~~~~~dviilD 135 (326)
T PF02606_consen 108 VPVIVGPDRVAAARAALKEFPADVIILD 135 (326)
T ss_pred CcEEEeCcHHHHHHHHHHHCCCCEEEEc
Confidence 4556666666566555555779999998
No 192
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=27.51 E-value=2e+02 Score=20.75 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=7.6
Q ss_pred HHHHHHhcCCCEEEe
Q 036644 116 AVRVAKKFKATWIIL 130 (131)
Q Consensus 116 I~~~a~~~~a~~vVl 130 (131)
..+.+.+.+.-.|++
T Consensus 71 ~~~~~~~~~ipvV~~ 85 (266)
T cd06282 71 ALDLLDAERVPYVLA 85 (266)
T ss_pred HHHHHhhCCCCEEEE
Confidence 345555555555544
No 193
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=27.45 E-value=2.8e+02 Score=21.19 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+.++.+.+++.|..+.+.+..-..+.... +..++++.+.+++
T Consensus 94 TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~-~~l~~~gvd~~~~ 136 (217)
T COG0269 94 TIKKAIKVAKEYGKEVQIDLIGVWDPEQRA-KWLKELGVDQVIL 136 (217)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCCCHHHHH-HHHHHhCCCEEEE
Confidence 566788888999999988888766666544 8888899998875
No 194
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=27.34 E-value=89 Score=18.89 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=22.0
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.+.|++|+. +- |. +.. .++||+|-++.++
T Consensus 37 ~~~v~v~vNg~--iv-----~~-~~~-l~~gD~Veii~~V 67 (70)
T PRK08364 37 TESAIAKVNGK--VA-----LE-DDP-VKDGDYVEVIPVV 67 (70)
T ss_pred CccEEEEECCE--EC-----CC-CcC-cCCCCEEEEEccc
Confidence 35688899886 22 32 444 7999999998764
No 195
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.28 E-value=2.3e+02 Score=20.61 Aligned_cols=14 Identities=7% Similarity=-0.123 Sum_probs=7.3
Q ss_pred HHHHHHHhcCCeEE
Q 036644 90 QISKLCQAENIEFE 103 (131)
Q Consensus 90 ~~~~~c~~~~V~~~ 103 (131)
.+.+.|++.|..+.
T Consensus 20 gi~~~~~~~g~~~~ 33 (273)
T cd06292 20 AIEAALAQYGYTVL 33 (273)
T ss_pred HHHHHHHHCCCEEE
Confidence 44555555555443
No 196
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=27.19 E-value=1.4e+02 Score=23.83 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHH---HHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVA---VRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I---~~~a~~~~a~~vVlD 131 (131)
++++..+++..++.+... ..+..|...+ +..+...+.|+|++|
T Consensus 158 ~eql~~~a~~~~i~~~~~-~~~~dpa~~v~~~l~~~~~~~~D~ViID 203 (318)
T PRK10416 158 IEQLQVWGERVGVPVIAQ-KEGADPASVAFDAIQAAKARGIDVLIID 203 (318)
T ss_pred HHHHHHHHHHcCceEEEe-CCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 345677788888776543 2333343222 345677889999998
No 197
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=27.08 E-value=2.5e+02 Score=20.33 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=24.4
Q ss_pred EEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEec
Q 036644 10 VVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 10 vVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~ 46 (131)
++++|.| . =+.-+.||-++. ....-.|.|++.+.
T Consensus 89 I~~MDes-N-~~dL~~~a~~~~-~~~kakV~Llgsy~ 122 (159)
T KOG3217|consen 89 ILAMDES-N-LRDLLRKASNQP-KGSKAKVLLLGSYD 122 (159)
T ss_pred eEEecHH-H-HHHHHHHhccCC-CCcceEEEEeeccC
Confidence 6799998 3 677899995444 23334799999975
No 198
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=26.86 E-value=1.7e+02 Score=21.45 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=7.3
Q ss_pred HHHHHHhcCCCEEEe
Q 036644 116 AVRVAKKFKATWIIL 130 (131)
Q Consensus 116 I~~~a~~~~a~~vVl 130 (131)
+++.+.+.+.-+|.+
T Consensus 72 ~i~~~~~~~iPvV~~ 86 (273)
T cd06309 72 VLKEAKAAGIPVILV 86 (273)
T ss_pred HHHHHHHCCCCEEEE
Confidence 335555555555444
No 199
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=26.78 E-value=3.4e+02 Score=21.92 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCeEEEEE
Q 036644 88 IEQISKLCQAENIEFEIEV 106 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v 106 (131)
+.++.+.|++.|+.+-+.+
T Consensus 145 l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 145 VERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHHHHHcCCceEEEE
Confidence 6688999999999998764
No 200
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=26.76 E-value=1.3e+02 Score=23.66 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++|+++||.+- ...+-....+.+..+++++|++|.
T Consensus 47 ~v~~~a~~~~Ip~~---~~~~~~~~~~~~~l~~~~~Dliv~ 84 (309)
T PRK00005 47 PVKQLALEHGIPVL---QPEKLRDPEFLAELAALNADVIVV 84 (309)
T ss_pred HHHHHHHHcCCCEE---CcCCCCCHHHHHHHHhcCcCEEEE
Confidence 34678888888862 222211223568888999999875
No 201
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=26.67 E-value=2.1e+02 Score=20.48 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vV 129 (131)
+..+.+++++.|++ +.|..| |..+-+.+++.+.+.||
T Consensus 75 Ig~l~~lae~~g~~--v~i~~G---gt~ar~~ik~~~p~~ii 111 (158)
T PF01976_consen 75 IGDLKKLAEKYGYK--VYIATG---GTLARKIIKEYRPKAII 111 (158)
T ss_pred hhHHHHHHHHcCCE--EEEEcC---hHHHHHHHHHhCCCEEE
Confidence 56778889998876 566766 44677888888888665
No 202
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=26.41 E-value=2.2e+02 Score=21.75 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=13.9
Q ss_pred hhHHHHHHHhc---CCCEEEeC
Q 036644 113 KTVAVRVAKKF---KATWIILD 131 (131)
Q Consensus 113 ~~~I~~~a~~~---~a~~vVlD 131 (131)
.+.+.++|+++ +||+||||
T Consensus 164 ~~~l~~Aa~~L~~~gadlIvLD 185 (221)
T PF07302_consen 164 EEELAAAARELAEQGADLIVLD 185 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEE
Confidence 34566777665 69999998
No 203
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=26.37 E-value=47 Score=25.92 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.0
Q ss_pred EEEEEeCCcccChhHHhhHhhhcccCCC-CEEEEEEE
Q 036644 9 VVVIQDASRDVNSSAIGGILKNLSLKHG-DSLKFLAV 44 (131)
Q Consensus 9 VvVavD~Ske~S~~Al~WaL~nv~~~~g-D~l~llhv 44 (131)
-++++|- |..|++.|..|. .+.| +.+.++..
T Consensus 136 ~V~a~Di----s~~Al~~A~~Na-~~~~l~~~~~~~~ 167 (280)
T COG2890 136 EVIAVDI----SPDALALARENA-ERNGLVRVLVVQS 167 (280)
T ss_pred eEEEEEC----CHHHHHHHHHHH-HHcCCccEEEEee
Confidence 4556655 556999999999 6766 66555555
No 204
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=26.36 E-value=2.9e+02 Score=23.08 Aligned_cols=43 Identities=7% Similarity=0.080 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+++++.+.++++|.++- ...-+..+.+.|.+.+++.++..||.
T Consensus 52 ~l~~~~~~~~~~g~~v~-~a~t~~eA~~~v~~i~~~~~~~~vv~ 94 (432)
T TIGR00273 52 YLDQLKENVTQRGGHVY-YAKTAEEARKIIGKVAQEKNGKKVVK 94 (432)
T ss_pred HHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHHhCCCEEEE
Confidence 57777777777775554 22223455667888999999888874
No 205
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=26.19 E-value=2.1e+02 Score=23.06 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=21.1
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhH---HHHHHHhcCCCEEE
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTV---AVRVAKKFKATWII 129 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~---I~~~a~~~~a~~vV 129 (131)
+.+..++.++.+...-..++|.-+. +++.+++.++|.||
T Consensus 39 v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 80 (374)
T cd08183 39 LIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVI 80 (374)
T ss_pred HHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 3444455667665443445554432 33455566777776
No 206
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=26.04 E-value=1.6e+02 Score=23.04 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=20.9
Q ss_pred hcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 97 AENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 97 ~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+||..++..-....+++ +.+.+.+.++.|||+
T Consensus 31 ~~gIsAd~~~~~~~S~Ee-l~~~~~~~gi~wiVi 63 (273)
T PF12745_consen 31 AAGISADLMYDASPSQEE-LQSYCREDGISWIVI 63 (273)
T ss_pred HCCCceEeccccCCCHHH-HHHHHHHCCCCEEEE
Confidence 457777765554434554 557777777777775
No 207
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.99 E-value=3.3e+02 Score=21.43 Aligned_cols=83 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred CcccceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHh
Q 036644 2 TEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEE 81 (131)
Q Consensus 2 ~~~~~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
+.+ +.||.|=+=|+ .+...||-+|..+= .-+.+-+.++.-.+
T Consensus 90 ~~~-~~kiavl~Sg~-g~nl~al~~~~~~~-~l~~~i~~visn~~----------------------------------- 131 (289)
T PRK13010 90 DGQ-RPKVVIMVSKF-DHCLNDLLYRWRMG-ELDMDIVGIISNHP----------------------------------- 131 (289)
T ss_pred CCC-CeEEEEEEeCC-CccHHHHHHHHHCC-CCCcEEEEEEECCh-----------------------------------
Q ss_pred hhChHHHHHHHHHHHhcCCeEEE---EEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 82 YQTNVEIEQISKLCQAENIEFEI---EVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 82 ~~~~~~l~~~~~~c~~~~V~~~~---~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+.++|++.||++.. .-..-......+.+..+++++|++|+
T Consensus 132 --------~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivl 175 (289)
T PRK13010 132 --------DLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVL 175 (289)
T ss_pred --------hHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEE
No 208
>PRK07481 hypothetical protein; Provisional
Probab=25.97 E-value=1.3e+02 Score=24.91 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 85 NVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 85 ~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
...++.++++|+++|+-+-+ .|..|. +.|..-.-+.-...+|+++|
T Consensus 233 ~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~ 280 (449)
T PRK07481 233 ANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCL 280 (449)
T ss_pred HHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEE
Confidence 34688999999999987755 444565 45654434445667888775
No 209
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=25.96 E-value=2.2e+02 Score=21.84 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCeEEEEEE--ecCCchh----HHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVR--PGVSLKT----VAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~--~G~~~~~----~I~~~a~~~~a~~vVl 130 (131)
.+..+++..|++....+. .|..|+. .+.+.+++.++..|+.
T Consensus 180 af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~ 226 (282)
T cd01017 180 AFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFF 226 (282)
T ss_pred cHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 455666666766543221 2333321 2445566666666553
No 210
>PRK11058 GTPase HflX; Provisional
Probab=25.95 E-value=2.7e+02 Score=23.12 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCeEEEEEEe-----------cCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRP-----------GVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~-----------G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|+.+..+|+..|+.+...+.. |...=+-|-+.++..+||.||+|
T Consensus 27 ~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~ 81 (426)
T PRK11058 27 LQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFD 81 (426)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEEC
Confidence 556788898888777554432 21111225566778999999997
No 211
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=25.95 E-value=1.6e+02 Score=20.18 Aligned_cols=38 Identities=11% Similarity=-0.116 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vV 129 (131)
.+...+++.+++.+-.+..||.+.. +++|++.+...|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~vgD~~~d--i~aA~~~G~~~i~ 182 (183)
T TIGR01509 145 IYLLALKKLGLKPEECLFVDDSPAG--IEAAKAAGMHTVL 182 (183)
T ss_pred HHHHHHHHcCCCcceEEEEcCCHHH--HHHHHHcCCEEEe
Confidence 4566677778877777788988764 4899999887664
No 212
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=25.95 E-value=91 Score=20.05 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCeEEE
Q 036644 87 EIEQISKLCQAENIEFEI 104 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~ 104 (131)
++..+..+|++++|++..
T Consensus 43 vv~~l~~lceek~Ip~v~ 60 (84)
T PRK13600 43 LMTRVLSQINQKNIPVSF 60 (84)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 355789999999999873
No 213
>PRK11914 diacylglycerol kinase; Reviewed
Probab=25.63 E-value=1.8e+02 Score=22.46 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=7.4
Q ss_pred HHHHHHhcCCCEEE
Q 036644 116 AVRVAKKFKATWII 129 (131)
Q Consensus 116 I~~~a~~~~a~~vV 129 (131)
+++++.+.++|.||
T Consensus 56 ~a~~~~~~~~d~vv 69 (306)
T PRK11914 56 LVAAALAKGTDALV 69 (306)
T ss_pred HHHHHHhcCCCEEE
Confidence 34444455566655
No 214
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=25.24 E-value=1.5e+02 Score=24.78 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
....|+.++++|+++|+-+-+ .|..|. +.|..-.-+--....|++++
T Consensus 244 ~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~ 292 (459)
T PRK06931 244 PVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVM 292 (459)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEe
Confidence 445799999999999987766 454555 66765555556677888765
No 215
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.23 E-value=1.2e+02 Score=20.81 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=20.7
Q ss_pred HhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 96 QAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 96 ~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+..|.++. -.-++.+-+.++++|.+.+|+.|+|
T Consensus 27 ~~~GfeVi--~lg~~~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 27 ADLGFDVD--VGPLFQTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred HhCCcEEE--ECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34554433 2222333346889999999999986
No 216
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.17 E-value=1.7e+02 Score=24.06 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
......+.|++-|++++..-...+..++-+.+.++++|.|
T Consensus 120 Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D 159 (364)
T PLN02616 120 YVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNND 159 (364)
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4556678888889888765555554555677888888876
No 217
>PRK07483 hypothetical protein; Provisional
Probab=25.15 E-value=1.6e+02 Score=24.30 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
....|+.+.++|+++++-+-+ .|+.|. +.|..-+-+--....|++++
T Consensus 219 ~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~ 267 (443)
T PRK07483 219 VPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTI 267 (443)
T ss_pred CHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeee
Confidence 344789999999999987755 444554 66755554445667777764
No 218
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=25.11 E-value=2.1e+02 Score=23.81 Aligned_cols=39 Identities=8% Similarity=0.146 Sum_probs=28.1
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc--CCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF--KATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~--~a~~vVl 130 (131)
+...+++.|+++......+|++. .|.++.++. ++|+||+
T Consensus 25 l~~~L~~~G~~v~~~~~v~Dd~~-~i~~~l~~a~~~~DlVIt 65 (413)
T TIGR00200 25 LADFLAHQGLPLSRRTTVGDNPE-RLKTIIRIASERADVLIF 65 (413)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHH-HHHHHHHHHhcCCCEEEE
Confidence 35567788999988888888876 455655443 5788875
No 219
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=24.98 E-value=53 Score=24.45 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=13.6
Q ss_pred eEEEEEEeCCcccChhHHh
Q 036644 7 ERVVVIQDASRDVNSSAIG 25 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~ 25 (131)
+|+++++|-| . |++.++
T Consensus 1 ~~l~lavDlS-g-SM~~~~ 17 (191)
T cd01455 1 KRLKLVVDVS-G-SMYRFN 17 (191)
T ss_pred CceEEEEECc-H-hHHHHh
Confidence 5799999999 4 876665
No 220
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=24.96 E-value=3.1e+02 Score=21.09 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=18.7
Q ss_pred HHHhcCCeEEEEEEe-cCCchhHHHHHHHhcCCCEEE
Q 036644 94 LCQAENIEFEIEVRP-GVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 94 ~c~~~~V~~~~~v~~-G~~~~~~I~~~a~~~~a~~vV 129 (131)
.+++.++.+++.... ..... .+++++.+.+.+.||
T Consensus 22 ~l~~~g~~~~v~~t~~~~~a~-~~a~~~~~~~~d~vv 57 (293)
T TIGR03702 22 DLRDEGIQLHVRVTWEKGDAQ-RYVAEALALGVSTVI 57 (293)
T ss_pred HHHHCCCeEEEEEecCCCCHH-HHHHHHHHcCCCEEE
Confidence 455667776655432 12234 355555556667665
No 221
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=24.96 E-value=2e+02 Score=19.46 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=21.9
Q ss_pred EEEEEEeCCcccC-------hhHHhhHhhhcccCCCCEEEEEEE
Q 036644 8 RVVVIQDASRDVN-------SSAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 8 ~VvVavD~Ske~S-------~~Al~WaL~nv~~~~gD~l~llhv 44 (131)
.+++.+|.|...+ +.|+...+..+ .++|.+-++..
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l--~~~~~v~li~f 43 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQL--RPDDRLAIVTY 43 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHHhC--CCCCEEEEEEe
Confidence 3688999994322 34555555444 57788777664
No 222
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=24.92 E-value=2.2e+02 Score=23.80 Aligned_cols=42 Identities=5% Similarity=0.048 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCeEEEEEEecC---CchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGV---SLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~---~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+-+++.|+.+- +..|. .+.+++-+.+++.+++.|+.+
T Consensus 59 L~~L~~~L~~~g~~L~--v~~g~~~g~~~~vl~~l~~~~~i~~v~~~ 103 (472)
T PRK10674 59 LNALQIALAEKGIPLL--FHEVDDFAASVEWLKQFCQQHQVTHLFYN 103 (472)
T ss_pred HHHHHHHHHHcCCceE--EEecCCcCCHHHHHHHHHHHcCCCEEEEe
Confidence 4456777777787664 44432 467789999999999998864
No 223
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=24.80 E-value=2.7e+02 Score=20.10 Aligned_cols=12 Identities=0% Similarity=0.102 Sum_probs=5.0
Q ss_pred HHHHhcCCCEEE
Q 036644 118 RVAKKFKATWII 129 (131)
Q Consensus 118 ~~a~~~~a~~vV 129 (131)
+.+.+.+.-+|.
T Consensus 74 ~~~~~~~ipvv~ 85 (270)
T cd01545 74 DLLDEAGVPYVR 85 (270)
T ss_pred HHHHhcCCCEEE
Confidence 444444444443
No 224
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=24.78 E-value=94 Score=24.74 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=17.7
Q ss_pred EEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 105 EVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 105 ~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.|.+|.++-..+-.+.++.++|+||+|
T Consensus 102 ~V~V~~dR~~a~~~~~~~~~~dviilD 128 (311)
T TIGR00682 102 TVVASKDRKDAILLILEQLDPDVIILD 128 (311)
T ss_pred cEEEeChHHHHHHHHHhcCCCCEEEEC
Confidence 445565555555444456689999998
No 225
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.67 E-value=4e+02 Score=21.92 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=55.2
Q ss_pred ChhHHhhHhh--hc--ccCCCCEEEEEEEecCCCCCCC-ceeecc--CCCcccccHHHHHHHHHHHHHh-----------
Q 036644 20 NSSAIGGILK--NL--SLKHGDSLKFLAVLHQVNNPMG-YKIRLD--SSSMVRTNQKIIEEHISRKKEE----------- 81 (131)
Q Consensus 20 S~~Al~WaL~--nv--~~~~gD~l~llhv~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------- 81 (131)
+.++.-|.-. .+ ..+.|+.|++.+-+.- .+|.| |.+.+. ..+..|.+.... +++.++.+.
T Consensus 53 ~i~~~~~~~~~~~~~~~~~~G~~v~v~g~~~~-y~~~g~~ql~v~~i~~~g~G~l~~~~-~~lk~~L~~eGlfd~~~k~~ 130 (438)
T PRK00286 53 QIRCVMFKGSARRLKFKPEEGMKVLVRGKVSL-YEPRGDYQLIVEEIEPAGIGALAAAF-EQLKEKLAAEGLFDPERKKP 130 (438)
T ss_pred EEEEEEEcChhhcCCCCCCCCCEEEEEEEEEE-ECCCCCEEEEEEEeeeCCccHHHHHH-HHHHHHHHHCCCCChhhcCC
Confidence 3455556422 22 2578999998887652 34545 555432 122224444443 222222211
Q ss_pred ---hhCh---------HHHHHHHHHHHhcCCeEEEEEEe----cCCchhHHHHHHHhcCC---CEEEe
Q 036644 82 ---YQTN---------VEIEQISKLCQAENIEFEIEVRP----GVSLKTVAVRVAKKFKA---TWIIL 130 (131)
Q Consensus 82 ---~~~~---------~~l~~~~~~c~~~~V~~~~~v~~----G~~~~~~I~~~a~~~~a---~~vVl 130 (131)
+.++ ..+..+....+.+.=.+++.+++ |..+..-|+++.+..+. |.||+
T Consensus 131 lP~~p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii 198 (438)
T PRK00286 131 LPFFPKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIV 198 (438)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEE
Confidence 0000 03334444444443334555543 77666678888887776 88875
No 226
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.67 E-value=2.2e+02 Score=21.30 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCeEEEEEEec-------CC-ch---------hHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPG-------VS-LK---------TVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G-------~~-~~---------~~I~~~a~~~~a~~vVl 130 (131)
+..+++.|++.|+.+...-..+ ++ +. ..+++.|+.++|.+|++
T Consensus 54 ~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 54 RLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3356788889998876432211 11 11 25779999999999875
No 227
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=24.63 E-value=2.4e+02 Score=20.56 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=6.5
Q ss_pred HHHHHHHhcCCeEE
Q 036644 90 QISKLCQAENIEFE 103 (131)
Q Consensus 90 ~~~~~c~~~~V~~~ 103 (131)
.+.+.|+++|+.+.
T Consensus 20 gi~~~~~~~g~~~~ 33 (273)
T cd01541 20 GIESVLSEKGYSLL 33 (273)
T ss_pred HHHHHHHHcCCEEE
Confidence 33444555554443
No 228
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.54 E-value=2.3e+02 Score=21.58 Aligned_cols=41 Identities=7% Similarity=-0.015 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCch----hHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLK----TVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~----~~I~~~a~~~~a~~vVl 130 (131)
.+..+++..|++.......|..|. ..+.+.+++.++..|+.
T Consensus 179 af~Y~~~~ygl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~ 223 (266)
T cd01018 179 AWGYFARDYGLTQIPIEEEGKEPSPADLKRLIDLAKEKGVRVVFV 223 (266)
T ss_pred hhHHHHHHcCCEEEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 567778888877654322344441 13557777778877764
No 229
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=24.43 E-value=1.6e+02 Score=22.67 Aligned_cols=40 Identities=10% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.+-..|+..|+++.+.+-.+.++. . .+..+.++|++++.|
T Consensus 71 alA~~a~~~Gl~~~i~vp~~~~~~-k-~~~~~~~GA~v~~~~ 110 (298)
T TIGR01139 71 ALAMVAAARGYKLILTMPETMSIE-R-RKLLKAYGAELVLTP 110 (298)
T ss_pred HHHHHHHHcCCeEEEEeCCccCHH-H-HHHHHHcCCEEEEEC
Confidence 345577788888887766665533 3 588889999988764
No 230
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=24.38 E-value=1.6e+02 Score=22.54 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
-+-..|+..|+++.+.+-.+.+ . .-++..+.++|+++..|
T Consensus 67 alA~~a~~~G~~~~i~vp~~~~-~-~k~~~~~~~Ga~v~~~~ 106 (291)
T cd01561 67 GLAMVAAAKGYRFIIVMPETMS-E-EKRKLLRALGAEVILTP 106 (291)
T ss_pred HHHHHHHHcCCeEEEEECCCCC-H-HHHHHHHHcCCEEEEeC
Confidence 4456788889988866665544 3 34488899999988764
No 231
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=24.16 E-value=1e+02 Score=18.93 Aligned_cols=27 Identities=30% Similarity=0.526 Sum_probs=17.9
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEE
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFL 42 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~ll 42 (131)
..+.|++|+. ... + +.. .++||.|.|+
T Consensus 48 ~~~~v~vn~~-~v~-----~--~~~-l~dgDevai~ 74 (80)
T TIGR01682 48 GQVMVAVNEE-YVT-----D--DAL-LNEGDEVAFI 74 (80)
T ss_pred cceEEEECCE-EcC-----C--CcC-cCCCCEEEEe
Confidence 4577888886 322 1 334 7899988765
No 232
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=24.06 E-value=1.8e+02 Score=23.97 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 85 NVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 85 ~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
...|+++.++|+++|+-+-+ .|+.|. +.|..-.-+--....|++++
T Consensus 239 ~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~ 286 (443)
T PRK06058 239 EGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITT 286 (443)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEE
Confidence 34688999999999987655 455565 45643323333466777765
No 233
>PRK11761 cysM cysteine synthase B; Provisional
Probab=24.05 E-value=1.6e+02 Score=22.94 Aligned_cols=40 Identities=8% Similarity=0.223 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.+-..|+.+|+++.+.+-.+.+ .. -.+..+.++|++++.|
T Consensus 77 alA~~a~~~G~~~~i~~p~~~~-~~-k~~~~~~~GA~v~~~~ 116 (296)
T PRK11761 77 ALAMIAAIKGYRMKLIMPENMS-QE-RRAAMRAYGAELILVP 116 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCC-HH-HHHHHHHcCCEEEEeC
Confidence 4566788899999877766654 43 4489999999998764
No 234
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=23.90 E-value=2.9e+02 Score=21.53 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=28.0
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHH---HhcCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVA---KKFKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a---~~~~a~~vVl 130 (131)
+.+.+.++|+.+.-...+||.+.. |.++. .+. +|+||+
T Consensus 26 la~~L~~~G~~v~~~~~VgD~~~~-I~~~l~~a~~r-~D~vI~ 66 (255)
T COG1058 26 LADELTELGVDLARITTVGDNPDR-IVEALREASER-ADVVIT 66 (255)
T ss_pred HHHHHHhcCceEEEEEecCCCHHH-HHHHHHHHHhC-CCEEEE
Confidence 456677899999999999998764 54543 344 888875
No 235
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=23.74 E-value=1.1e+02 Score=24.54 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=18.1
Q ss_pred EEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 105 EVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 105 ~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.|.+|.++-..+-.+.+..++|+||||
T Consensus 123 ~V~V~~dR~~~~~~~~~~~~~dviilD 149 (325)
T PRK00652 123 PVAVSPDRVAAARALLAAHGADIIILD 149 (325)
T ss_pred eEEEcCcHHHHHHHHHhcCCCCEEEEc
Confidence 566676666555344445599999998
No 236
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=23.20 E-value=2.4e+02 Score=21.97 Aligned_cols=39 Identities=10% Similarity=0.251 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.+++..++.+..+-+.+..+++ .+++.+-..+-|+|++|
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp---~~~E~~a~~GfD~v~iD 46 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTS---YMAEIAATSGYDWLLID 46 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCc---HHHHHHHHcCCCEEEEc
Confidence 3455555555555555555543 58899999999999998
No 237
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.12 E-value=2e+02 Score=23.43 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCeEEEEE-EecCCchhH---HHHHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEV-RPGVSLKTV---AVRVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v-~~G~~~~~~---I~~~a~~~~a~~vV 129 (131)
++++.+..++.|+.+.+.- ..++|.-+. .++.+++.++|.||
T Consensus 66 ~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~Ii 111 (395)
T PRK15454 66 TAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVI 111 (395)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEE
Confidence 4456666677787765442 234444332 34556678888886
No 238
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=23.12 E-value=2.9e+02 Score=22.28 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEe-cCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRP-GVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~-G~~~~~~I~~~a~~~~a~~vVl 130 (131)
++.++.+++.-++++-+|... |.. ...++.+.+.++|.|++
T Consensus 175 le~i~~i~~~~~vPVivK~~g~g~s--~~~a~~l~~~Gvd~I~V 216 (352)
T PRK05437 175 LDNIAEIVSALPVPVIVKEVGFGIS--KETAKRLADAGVKAIDV 216 (352)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCc--HHHHHHHHHcCCCEEEE
Confidence 456677777668888888762 333 34668888899999986
No 239
>PRK07480 putative aminotransferase; Validated
Probab=22.98 E-value=1.4e+02 Score=24.94 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
....|+.+.++|+++|+-+-+ .|+.|. +.|..-+-+.-....|++++
T Consensus 238 ~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~ 286 (456)
T PRK07480 238 PATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTI 286 (456)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeee
Confidence 344688999999999987755 444555 56655444445667777764
No 240
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.91 E-value=2.3e+02 Score=20.76 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=5.9
Q ss_pred HHHHhcCCCEEEe
Q 036644 118 RVAKKFKATWIIL 130 (131)
Q Consensus 118 ~~a~~~~a~~vVl 130 (131)
+.+++.+.-+|.+
T Consensus 74 ~~~~~~~iPvV~~ 86 (282)
T cd06318 74 AAAKAAGVPVVVV 86 (282)
T ss_pred HHHHHCCCCEEEe
Confidence 4444444444444
No 241
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=22.90 E-value=2.7e+02 Score=20.26 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCc---hhHHHHHHHhcCCCEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSL---KTVAVRVAKKFKATWI 128 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~---~~~I~~~a~~~~a~~v 128 (131)
+..+.+.|. ++.+++.+..|.-. -...|+.+.+.+||+|
T Consensus 107 i~~v~~~~~--g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~I 148 (203)
T cd00959 107 IAAVVEACG--GAPLKVILETGLLTDEEIIKACEIAIEAGADFI 148 (203)
T ss_pred HHHHHHhcC--CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEE
Confidence 445556664 78888765555332 2356888999999987
No 242
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=22.82 E-value=1.9e+02 Score=21.70 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
++.+.+++++|.+- ....+.+++ .+=..+++.++..+.+|
T Consensus 190 ~l~~~ik~~~v~~i-~~e~~~~~~-~~~~la~~~g~~vv~ld 229 (256)
T PF01297_consen 190 ELIKLIKENKVKCI-FTEPQFSSK-LAEALAKETGVKVVYLD 229 (256)
T ss_dssp HHHHHHHHTT-SEE-EEETTS-TH-HHHHHHHCCT-EEEESS
T ss_pred HHHHHhhhcCCcEE-EecCCCChH-HHHHHHHHcCCcEEEeC
Confidence 44556666666553 223333333 34445666666666655
No 243
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=22.81 E-value=68 Score=25.41 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
+.++.+.++|+++|+-+-+ .|..|. +.|..-.-..-.+.+|++++
T Consensus 198 ~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~ 244 (339)
T PF00202_consen 198 EYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTF 244 (339)
T ss_dssp THHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEE
T ss_pred chhhehcccccccccceecccccccccccCCccceecccccCccccc
Confidence 3688899999999987766 344454 55544444556677777764
No 244
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=22.81 E-value=4.5e+02 Score=21.85 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=54.6
Q ss_pred ChhHHhhHhhh----cccCCCCEEEEEEEecCCCCCCC-ceeecc--CCCcccccHHHHHHHHHHHHHh-----------
Q 036644 20 NSSAIGGILKN----LSLKHGDSLKFLAVLHQVNNPMG-YKIRLD--SSSMVRTNQKIIEEHISRKKEE----------- 81 (131)
Q Consensus 20 S~~Al~WaL~n----v~~~~gD~l~llhv~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------- 81 (131)
..++..|.-.+ +..+.|+.|++.+-+. +..|.| |.+... .....|.+.... +++.++.+.
T Consensus 47 ~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~-~y~~~G~~ql~v~~i~~~G~G~l~~~~-~~lk~~L~~eGlfd~~~k~~ 124 (432)
T TIGR00237 47 QVRCVMFRGNNNRLKFRPQNGQQVLVRGGIS-VYEPRGDYQIICFEMQPAGEGLLQLAY-EQLKEKLAAEGLFDQEYKKP 124 (432)
T ss_pred EEEEEEEcChhhCCCCCCCCCCEEEEEEEEE-EECCCCcEEEEEEEeccCChHHHHHHH-HHHHHHHHHCCCCCchhcCC
Confidence 34455564332 2357899998877664 334555 555443 122334444443 222222210
Q ss_pred ---hhCh---------HHHHHHHHHHHhcCCeEEEEEEe----cCCchhHHHHHHHhcCC----CEEEe
Q 036644 82 ---YQTN---------VEIEQISKLCQAENIEFEIEVRP----GVSLKTVAVRVAKKFKA----TWIIL 130 (131)
Q Consensus 82 ---~~~~---------~~l~~~~~~c~~~~V~~~~~v~~----G~~~~~~I~~~a~~~~a----~~vVl 130 (131)
+... ..+..+....+.+.-.+++.+++ |..+..-|+++.+..+. |.||+
T Consensus 125 lP~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii 193 (432)
T TIGR00237 125 LPHFPKRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIV 193 (432)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEE
Confidence 0000 03334444444444334444443 77777778888776654 77775
No 245
>PRK13685 hypothetical protein; Provisional
Probab=22.78 E-value=2.3e+02 Score=22.37 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=23.4
Q ss_pred ceEEEEEEeCCcccChhH-------HhhHhh---hcc--cCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSA-------IGGILK---NLS--LKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~A-------l~WaL~---nv~--~~~gD~l~llhv~ 45 (131)
...|++++|.|. |+.+ |+.|.. ++. .++||.+-++..-
T Consensus 88 ~~~vvlvlD~S~--SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa 137 (326)
T PRK13685 88 RAVVMLVIDVSQ--SMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFA 137 (326)
T ss_pred CceEEEEEECCc--cccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 457999999993 5543 333322 221 2578888777653
No 246
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.65 E-value=2.6e+02 Score=20.26 Aligned_cols=14 Identities=0% Similarity=0.223 Sum_probs=6.7
Q ss_pred HHHHHhcCCCEEEe
Q 036644 117 VRVAKKFKATWIIL 130 (131)
Q Consensus 117 ~~~a~~~~a~~vVl 130 (131)
.+.+++.+..+|.+
T Consensus 71 ~~~~~~~~ipvV~i 84 (270)
T cd06296 71 RAALRRTGIPFVVV 84 (270)
T ss_pred HHHHhcCCCCEEEE
Confidence 35555545444444
No 247
>PRK00549 competence damage-inducible protein A; Provisional
Probab=22.64 E-value=2.5e+02 Score=23.18 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=28.4
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHh--cCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK--FKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~--~~a~~vVl 130 (131)
+...+.+.|+++......+|++. .|.++.++ .++|+||+
T Consensus 25 L~~~L~~~G~~v~~~~~v~Dd~~-~I~~~l~~a~~~~DlVIt 65 (414)
T PRK00549 25 LSEKLAELGIDVYHQTVVGDNPE-RLLSALEIAEERSDLIIT 65 (414)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHH-HHHHHHHHhccCCCEEEE
Confidence 35567788999988888888877 46666654 36788875
No 248
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=22.63 E-value=2.9e+02 Score=19.92 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=6.1
Q ss_pred HHHHHHHhcCCeEE
Q 036644 90 QISKLCQAENIEFE 103 (131)
Q Consensus 90 ~~~~~c~~~~V~~~ 103 (131)
.+.+.|++.|..+.
T Consensus 20 gi~~~~~~~~~~~~ 33 (264)
T cd01574 20 AIESAAREAGYAVT 33 (264)
T ss_pred HHHHHHHHCCCeEE
Confidence 33444444444443
No 249
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=22.63 E-value=2.6e+02 Score=20.72 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCeEEEEEEecC---CchhH-----------HHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGV---SLKTV-----------AVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~---~~~~~-----------I~~~a~~~~a~~vVl 130 (131)
.+++..++.|+.+......++ .+.+. +|+.|+++++.+||+
T Consensus 49 ~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~ 103 (274)
T COG1082 49 ELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVV 103 (274)
T ss_pred HHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEe
Confidence 557777888888876443332 22222 789999999998874
No 250
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.; PDB: 2VGN_A 2VGM_A 3J16_A 3IZQ 3AGK_A 3AGJ_B 3OBW_A 3E1Y_D 1DT9_A 2LLX_A ....
Probab=22.60 E-value=47 Score=22.81 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=14.3
Q ss_pred hHhhhcccCCCCEEEEEE
Q 036644 26 GILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 26 WaL~nv~~~~gD~l~llh 43 (131)
|.|-|+ ..|||.++--.
T Consensus 27 w~L~~l-i~~gD~v~~~t 43 (132)
T PF03463_consen 27 WHLYNL-IIPGDEVISKT 43 (132)
T ss_dssp HHHHHH-EETTTEEEECC
T ss_pred EEEEEE-EECCCEEEEEE
Confidence 999999 89999876543
No 251
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.57 E-value=2.2e+02 Score=18.25 Aligned_cols=38 Identities=5% Similarity=0.020 Sum_probs=22.0
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+....++.|.++. +.-.+.+.+.+++.+++.++|+|.+
T Consensus 20 la~~l~~~G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~i 57 (121)
T PF02310_consen 20 LAAYLRKAGHEVD--ILDANVPPEELVEALRAERPDVVGI 57 (121)
T ss_dssp HHHHHHHTTBEEE--EEESSB-HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHCCCeEE--EECCCCCHHHHHHHHhcCCCcEEEE
Confidence 3445555666554 3322223356778888888888765
No 252
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=22.57 E-value=2.4e+02 Score=24.57 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=24.0
Q ss_pred cCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 98 ENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 98 ~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.++.+-+.+=-|...-+ .++.|++++.|+||+|
T Consensus 126 ~~~~LiItvD~Gi~~~e-~i~~a~~~gidvIVtD 158 (575)
T PRK11070 126 RGAQLIVTVDNGISSHA-GVAHAHALGIPVLVTD 158 (575)
T ss_pred cCCCEEEEEcCCcCCHH-HHHHHHHCCCCEEEEC
Confidence 45555555555766554 4588999999999998
No 253
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=22.53 E-value=3.5e+02 Score=20.48 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=24.8
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEec
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~ 46 (131)
++++-.=|-|+ |..|+.|+++ + .|-+.+++.++
T Consensus 2 kv~vl~SGGKD-S~lAl~~~~~----~-~~V~~L~~~~~ 34 (222)
T TIGR00289 2 KVAVLYSGGKD-SILALYKALE----E-HEVISLVGVFS 34 (222)
T ss_pred eEEEEecCcHH-HHHHHHHHHH----c-CeeEEEEEEcC
Confidence 57777778887 9999999885 3 47677777764
No 254
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=22.53 E-value=3.2e+02 Score=20.06 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 102 FEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 102 ~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
+++.-..++ |+..++.+++.++|++|||
T Consensus 26 ~~vv~~a~~--~~~~l~~~~~~~pdvvl~D 53 (211)
T COG2197 26 LEVVGEASN--GEEALDLARELKPDVVLLD 53 (211)
T ss_pred CEEEEEeCC--HHHHHHHhhhcCCCEEEEc
Confidence 444444443 4456688999999999998
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=22.49 E-value=99 Score=19.59 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=16.8
Q ss_pred EEEEeCC--cccChhHHhhHhhhcccCCCCEEEEEE
Q 036644 10 VVIQDAS--RDVNSSAIGGILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 10 vVavD~S--ke~S~~Al~WaL~nv~~~~gD~l~llh 43 (131)
++-+||+ .+...+.|++++..+ +|| .++++|
T Consensus 72 li~iDg~H~~~~~~~dl~~~~~~l--~~g-gviv~d 104 (106)
T PF13578_consen 72 LIFIDGDHSYEAVLRDLENALPRL--APG-GVIVFD 104 (106)
T ss_dssp EEEEES---HHHHHHHHHHHGGGE--EEE-EEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHc--CCC-eEEEEe
Confidence 5678997 123344555555544 343 566665
No 256
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=22.44 E-value=2.5e+02 Score=20.80 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=7.9
Q ss_pred HHHHHHHhcCCeEEE
Q 036644 90 QISKLCQAENIEFEI 104 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~ 104 (131)
.+.+.|+++|+.+.+
T Consensus 23 gi~~~~~~~gy~~~i 37 (265)
T cd06354 23 GLERAAKELGIEYKY 37 (265)
T ss_pred HHHHHHHHcCCeEEE
Confidence 445555556654443
No 257
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.34 E-value=3.1e+02 Score=19.91 Aligned_cols=14 Identities=7% Similarity=0.453 Sum_probs=6.5
Q ss_pred HHHHHhcCCCEEEe
Q 036644 117 VRVAKKFKATWIIL 130 (131)
Q Consensus 117 ~~~a~~~~a~~vVl 130 (131)
++.+.+.+.-+|.+
T Consensus 73 ~~~l~~~~ipvV~~ 86 (268)
T cd06277 73 IKEIKELGIPFVLV 86 (268)
T ss_pred HHHHhhcCCCEEEE
Confidence 34444444444444
No 258
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=22.28 E-value=1.8e+02 Score=19.42 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=22.9
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEE
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llh 43 (131)
+||++++=|| -...++++| +..+ .+.|-.|.++-
T Consensus 1 k~i~l~vtGs-~~~~~~~~~-l~~L-~~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGS-IAAYKAPDL-LRRL-KRAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SS-GGGGGHHHH-HHHH-HTTTSEEEEEE
T ss_pred CEEEEEEECH-HHHHHHHHH-HHHH-hhCCCEEEEEE
Confidence 5899999999 457776655 5577 67777766554
No 259
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=22.26 E-value=2.6e+02 Score=22.81 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCeEE-EEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 89 EQISKLCQAENIEFE-IEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 89 ~~~~~~c~~~~V~~~-~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
++++..++..++..+ +.+....... .|.+.+++.++++||+|
T Consensus 123 ~qi~~Ra~rlg~~~~~l~l~~e~~le-~I~~~i~~~~~~lVVID 165 (372)
T cd01121 123 EQIKLRADRLGISTENLYLLAETNLE-DILASIEELKPDLVIID 165 (372)
T ss_pred HHHHHHHHHcCCCcccEEEEccCcHH-HHHHHHHhcCCcEEEEc
Confidence 344444555555433 2333333444 68899999999999998
No 260
>PF08865 DUF1830: Domain of unknown function (DUF1830); InterPro: IPR014964 This group of short proteins is functionally uncharacterised.
Probab=22.20 E-value=34 Score=21.22 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.3
Q ss_pred hhHhhhcccCCCCEEEEEEE
Q 036644 25 GGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 25 ~WaL~nv~~~~gD~l~llhv 44 (131)
.||++.+ +-||+.+++-..
T Consensus 20 ~~y~ERV-VFP~e~l~FeAp 38 (68)
T PF08865_consen 20 NWYFERV-VFPGERLLFEAP 38 (68)
T ss_pred CceEEEE-EcCCcEEEEEcC
Confidence 4999999 999999887663
No 261
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=22.07 E-value=1.5e+02 Score=21.10 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=25.8
Q ss_pred EEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEec
Q 036644 10 VVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 10 vVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~ 46 (131)
.+.||+. .+.-.-|.=.+..+ ++.||.|+++-+-.
T Consensus 4 ~~viDA~-~~vlGRLAs~IA~~-L~~Gd~VVViNa~k 38 (146)
T PRK06394 4 MVVIDAE-GQILGRLASYVAKR-LLEGEEVVIVNAEK 38 (146)
T ss_pred cEEEECC-CCchHHHHHHHHHH-HhCCCEEEEEechh
Confidence 3578987 66665565566666 78999999998754
No 262
>PRK10717 cysteine synthase A; Provisional
Probab=22.06 E-value=1.8e+02 Score=22.89 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
-+-..|+..|+++.+.+-.+.+ .. -++..+.++|+++..|
T Consensus 78 alA~~a~~~G~~~~vv~p~~~~-~~-k~~~~~~~GA~V~~~~ 117 (330)
T PRK10717 78 GLALVAAARGYKTVIVMPETQS-QE-KKDLLRALGAELVLVP 117 (330)
T ss_pred HHHHHHHHcCCcEEEEeCCCCC-HH-HHHHHHHcCCEEEEeC
Confidence 4566788899998877766654 43 4489999999988764
No 263
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=22.00 E-value=2.2e+02 Score=21.73 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=24.3
Q ss_pred ceEEEEEEeCCccc------ChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDV------NSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~------S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
+..|++.+|.|... .+.|+.=.++++ .+++|.+-|+..-
T Consensus 53 p~~vvlvlD~SgSM~~~~~~a~~a~~~~l~~~-l~~~d~v~lv~f~ 97 (296)
T TIGR03436 53 PLTVGLVIDTSGSMRNDLDRARAAAIRFLKTV-LRPNDRVFVVTFN 97 (296)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHHHHHhh-CCCCCEEEEEEeC
Confidence 67899999999321 122233333343 4788998887753
No 264
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=21.99 E-value=59 Score=27.80 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred hhHHhhHhhhcccCCCC--EEEEEEE
Q 036644 21 SSAIGGILKNLSLKHGD--SLKFLAV 44 (131)
Q Consensus 21 ~~Al~WaL~nv~~~~gD--~l~llhv 44 (131)
..||+|--+|++.-.|| +|+|.+-
T Consensus 162 ilALkWV~~NIe~FGGDp~NVTl~Ge 187 (491)
T COG2272 162 ILALKWVRDNIEAFGGDPQNVTLFGE 187 (491)
T ss_pred HHHHHHHHHHHHHhCCCccceEEeec
Confidence 46999999999777888 6998874
No 265
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=21.82 E-value=3.4e+02 Score=20.13 Aligned_cols=39 Identities=18% Similarity=-0.030 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCeEEEE-EEecCCchhHHHHHHHhcCCCEEE
Q 036644 90 QISKLCQAENIEFEIE-VRPGVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~-v~~G~~~~~~I~~~a~~~~a~~vV 129 (131)
-+...+++.++...-. +..||.+..=| +.|++.+...+-
T Consensus 193 ~~~~~~~~~~~~~~~~~~~IGD~~~~Di-~~A~~~G~~~i~ 232 (236)
T TIGR01460 193 IYRAALNLLQARPERRDVMVGDNLRTDI-LGAKNAGFDTLL 232 (236)
T ss_pred HHHHHHHHhCCCCccceEEECCCcHHHH-HHHHHCCCcEEE
Confidence 3455666666655444 78898874224 788888877653
No 266
>PLN02565 cysteine synthase
Probab=21.80 E-value=1.9e+02 Score=22.92 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.+-..|+..|+++.+.+-.+. +...+ +..+.++|.+++.|
T Consensus 81 alA~~a~~~G~~~~ivvp~~~-~~~k~-~~i~~~GA~V~~~~ 120 (322)
T PLN02565 81 GLAFMAAAKGYKLIITMPASM-SLERR-IILLAFGAELVLTD 120 (322)
T ss_pred HHHHHHHHcCCeEEEEeCCCC-cHHHH-HHHHHcCCEEEEeC
Confidence 456688889999986666664 45445 99999999998764
No 267
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=21.76 E-value=1.7e+02 Score=22.65 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHH---HHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVA---VRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I---~~~a~~~~a~~vVlD 131 (131)
.+++..+++..++.+.. ...+.+|...+ ++.+...+.|+|++|
T Consensus 116 ~~ql~~~~~~~~i~~~~-~~~~~dp~~~~~~~l~~~~~~~~D~ViID 161 (272)
T TIGR00064 116 IEQLEEWAKRLGVDVIK-QKEGADPAAVAFDAIQKAKARNIDVVLID 161 (272)
T ss_pred HHHHHHHHHhCCeEEEe-CCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 35677888888865431 11232333333 345566789999998
No 268
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.67 E-value=1.2e+02 Score=19.92 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCeEEEE
Q 036644 89 EQISKLCQAENIEFEIE 105 (131)
Q Consensus 89 ~~~~~~c~~~~V~~~~~ 105 (131)
+++++.|+++|+++++.
T Consensus 18 ~km~~~a~~~gi~~~i~ 34 (99)
T cd05565 18 NALNKGAKERGVPLEAA 34 (99)
T ss_pred HHHHHHHHHCCCcEEEE
Confidence 36688899999987744
No 269
>PRK06988 putative formyltransferase; Provisional
Probab=21.60 E-value=2e+02 Score=22.69 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++|++.||++-. ..+...+.+.+..++.++|++|.
T Consensus 46 ~v~~~A~~~gip~~~---~~~~~~~~~~~~l~~~~~Dliv~ 83 (312)
T PRK06988 46 SVAAVAAEHGIPVIT---PADPNDPELRAAVAAAAPDFIFS 83 (312)
T ss_pred HHHHHHHHcCCcEEc---cccCCCHHHHHHHHhcCCCEEEE
Confidence 346678888888642 22222334668889999999874
No 270
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=21.48 E-value=81 Score=20.12 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=14.7
Q ss_pred cChhHHhhHhhhcccCCCCEEEEEE
Q 036644 19 VNSSAIGGILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 19 ~S~~Al~WaL~nv~~~~gD~l~llh 43 (131)
++..+|..+| ++ ..+||.|+|+.
T Consensus 4 f~~~~l~~~l-~~-~~~~D~ilLiq 26 (88)
T PF04077_consen 4 FETNALESCL-RL-LSEGDAILLIQ 26 (88)
T ss_dssp CCCSHHHHHH-HC---TT-EEEE-G
T ss_pred cchhhHHHHH-Hh-cCCCCEEEeeH
Confidence 4556888888 55 58999999874
No 271
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=21.44 E-value=57 Score=27.01 Aligned_cols=19 Identities=26% Similarity=0.127 Sum_probs=14.9
Q ss_pred EEEEeCCcccChhHHhhHhhhcc
Q 036644 10 VVIQDASRDVNSSAIGGILKNLS 32 (131)
Q Consensus 10 vVavD~Ske~S~~Al~WaL~nv~ 32 (131)
++.||.| ++||+||-+|+.
T Consensus 243 vt~VD~S----~~al~~a~~N~~ 261 (393)
T COG1092 243 VTSVDLS----KRALEWARENAE 261 (393)
T ss_pred eEEEecc----HHHHHHHHHHHH
Confidence 3478776 469999999994
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=21.35 E-value=1.7e+02 Score=24.47 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhH---HHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTV---AVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~---I~~~a~~~~a~~vVlD 131 (131)
.++++..++..++.+.. ...+.+|-.+ .++.+++.+.|+|++|
T Consensus 144 ~eQLk~~a~~~~vp~~~-~~~~~dp~~i~~~~l~~~~~~~~DvViID 189 (429)
T TIGR01425 144 FDQLKQNATKARIPFYG-SYTESDPVKIASEGVEKFKKENFDIIIVD 189 (429)
T ss_pred HHHHHHHhhccCCeEEe-ecCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45667788887877753 2223334322 2355666789999998
No 273
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=21.33 E-value=3.6e+02 Score=21.44 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
++.++.+++.-++++-+|.. |...-...++..++.++|.|++
T Consensus 168 le~i~~i~~~~~vPVivK~~-g~g~~~~~a~~L~~aGvd~I~V 209 (333)
T TIGR02151 168 LEKIAEICSQLSVPVIVKEV-GFGISKEVAKLLADAGVSAIDV 209 (333)
T ss_pred HHHHHHHHHhcCCCEEEEec-CCCCCHHHHHHHHHcCCCEEEE
Confidence 44667777766888888765 2222224668888999999986
No 274
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=21.24 E-value=1.2e+02 Score=19.95 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=24.9
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEE
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llh 43 (131)
..+|+++-+|+ .......+++.+++-.+.+.|+|+.
T Consensus 80 ~p~Vvias~gm--l~~G~s~~~l~~~~~d~~n~Ii~~g 115 (126)
T PF10996_consen 80 GPKVVIASSGM--LEGGRSRHYLKRLASDPRNTIIFTG 115 (126)
T ss_dssp SSEEEEESSTT--SSSSHHHHHHHHHTTSTTSEEEESS
T ss_pred CCeEEEeCCCC--CCCCHHHHHHHHHcCCCCCeEEEec
Confidence 46899999998 3444666777787445666666654
No 275
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=21.01 E-value=89 Score=25.56 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.1
Q ss_pred ChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 20 NSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 20 S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
+..=| |.|.|+ .++||.|...+..
T Consensus 19 ~lDDL-w~L~~I-i~~GD~v~a~T~R 42 (352)
T COG1537 19 TLDDL-WHLYNI-IEKGDKVFAKTTR 42 (352)
T ss_pred ChHHH-HHHHHh-cCCCCEEEEEEEE
Confidence 33334 999999 9999999999987
No 276
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.01 E-value=1.6e+02 Score=19.63 Aligned_cols=35 Identities=14% Similarity=-0.060 Sum_probs=22.6
Q ss_pred HHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 94 LCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 94 ~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+-+.+|.++. ..-...|+. -+++++.+.+++.|+|
T Consensus 22 ~l~~~G~~vi-~lG~~vp~e-~~~~~a~~~~~d~V~i 56 (122)
T cd02071 22 ALRDAGFEVI-YTGLRQTPE-EIVEAAIQEDVDVIGL 56 (122)
T ss_pred HHHHCCCEEE-ECCCCCCHH-HHHHHHHHcCCCEEEE
Confidence 4455675544 222234444 6889999999999986
No 277
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=20.78 E-value=2.4e+02 Score=19.92 Aligned_cols=40 Identities=13% Similarity=-0.100 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 89 EQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 89 ~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+-+...|++.|+..+-.+..||.+.. + +.|++.+...|-+
T Consensus 152 ~~~~~~~~~~~~~p~~~~~vgD~~~D-i-~~A~~~G~~~i~v 191 (198)
T TIGR01428 152 QVYQLALEALGVPPDEVLFVASNPWD-L-GGAKKFGFKTAWV 191 (198)
T ss_pred HHHHHHHHHhCCChhhEEEEeCCHHH-H-HHHHHCCCcEEEe
Confidence 35677888888888777888988743 3 7899988877654
No 278
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=20.77 E-value=3.5e+02 Score=22.76 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=17.8
Q ss_pred ChhHHhhHhhhcccCCCCEEEEEE
Q 036644 20 NSSAIGGILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 20 S~~Al~WaL~nv~~~~gD~l~llh 43 (131)
+..||--++--+ +.+||+|++.-
T Consensus 102 A~~ai~~~~~~l-~~~GDeVii~e 124 (420)
T KOG0257|consen 102 ANEAISSALLGL-LNPGDEVIVFE 124 (420)
T ss_pred chHHHHHHHHHH-cCCCCEEEEec
Confidence 345887788888 89999998753
No 279
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=20.71 E-value=2e+02 Score=20.03 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEE
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vV 129 (131)
+...+++.|++..=.+..||.+.. +++|++.+...|.
T Consensus 147 ~~~~~~~~~~~~~~~l~vgD~~~d--i~aA~~~G~~~i~ 183 (184)
T TIGR01993 147 YEKALREAGVDPERAIFFDDSARN--IAAAKALGMKTVL 183 (184)
T ss_pred HHHHHHHhCCCccceEEEeCCHHH--HHHHHHcCCEEee
Confidence 455556667776656778887764 5899999887653
No 280
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=20.57 E-value=1.9e+02 Score=21.38 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCeEEEEEEe-cC------Cchh--HHHHHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRP-GV------SLKT--VAVRVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~-G~------~~~~--~I~~~a~~~~a~~vV 129 (131)
+.++.+.|.+.++.+-+.... |- .+.. ..++.+.+.+||+|=
T Consensus 111 i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik 161 (235)
T cd00958 111 LARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVK 161 (235)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEE
Confidence 667888998899887665544 11 1121 124568889999874
No 281
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=20.51 E-value=2.3e+02 Score=20.23 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
-+...|++.|+..+-.++.||.+. .=++.|++.+...|-+
T Consensus 155 ~~~~~~~~~~~~~~~~~~igDs~~-~di~~A~~aG~~~i~~ 194 (221)
T TIGR02253 155 IFYAALKRLGVKPEEAVMVGDRLD-KDIKGAKNLGMKTVWI 194 (221)
T ss_pred HHHHHHHHcCCChhhEEEECCChH-HHHHHHHHCCCEEEEE
Confidence 566777788887776788898764 2348888888876643
No 282
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.41 E-value=1.3e+02 Score=24.51 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=18.7
Q ss_pred cChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 19 VNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 19 ~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
..++.++..++|. .|||.|++++|-
T Consensus 337 A~ervk~ii~~~~--~pgDsVlVVGvG 361 (368)
T COG4046 337 ALERVKDIILNNE--APGDSVLVVGVG 361 (368)
T ss_pred HHHHHHHHHhcCC--CCCCeEEEEecC
Confidence 3456666666665 699999999984
No 283
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=20.35 E-value=2.4e+02 Score=23.87 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vV 129 (131)
.+...|++.||++++.+ +..-|. .-++..++++|+.+|
T Consensus 128 a~Ayaa~~LgipaTIVm-P~~tp~-~kiq~~~nlGA~Vil 165 (457)
T KOG1250|consen 128 AAAYAARKLGIPATIVM-PVATPL-MKIQRCRNLGATVIL 165 (457)
T ss_pred HHHHHHHhcCCceEEEe-cCCChH-HHHHHHhccCCEEEE
Confidence 45667788899998544 444456 445999999999987
No 284
>PRK14974 cell division protein FtsY; Provisional
Probab=20.27 E-value=1.7e+02 Score=23.65 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHH---HHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVA---VRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I---~~~a~~~~a~~vVlD 131 (131)
.+++..+++..|+.+.. ...|..|-.++ ++.++..+.|+|++|
T Consensus 184 ~eqL~~~a~~lgv~v~~-~~~g~dp~~v~~~ai~~~~~~~~DvVLID 229 (336)
T PRK14974 184 IEQLEEHAERLGVKVIK-HKYGADPAAVAYDAIEHAKARGIDVVLID 229 (336)
T ss_pred HHHHHHHHHHcCCceec-ccCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45778888888887653 22333343333 345566788999887
No 285
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=20.20 E-value=2.6e+02 Score=22.09 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchh--HHHHHHHhcCCCEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKT--VAVRVAKKFKATWI 128 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~--~I~~~a~~~~a~~v 128 (131)
.+-+.|-++||+.-+.+-.|.+..+ -+.+.|++.+..++
T Consensus 80 ~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 80 DAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4455677899999988888987766 78888988776543
No 286
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=20.20 E-value=2.5e+02 Score=22.59 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=6.2
Q ss_pred HHHHHhcCCCEEE
Q 036644 117 VRVAKKFKATWII 129 (131)
Q Consensus 117 ~~~a~~~~a~~vV 129 (131)
++.+++.++|.||
T Consensus 79 ~~~~~~~~~D~Ii 91 (379)
T TIGR02638 79 VAAFKASGADYLI 91 (379)
T ss_pred HHHHHhcCCCEEE
Confidence 3444445555554
No 287
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=20.18 E-value=1.2e+02 Score=21.03 Aligned_cols=39 Identities=3% Similarity=-0.171 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
-+...|++.++..+-.++.||.+.. +++|++.+...|-+
T Consensus 146 ~~~~~~~~~~~~~~~~v~vgD~~~d--i~aA~~aG~~~i~v 184 (185)
T TIGR01990 146 IFLAAAEGLGVSPSECIGIEDAQAG--IEAIKAAGMFAVGV 184 (185)
T ss_pred HHHHHHHHcCCCHHHeEEEecCHHH--HHHHHHcCCEEEec
Confidence 4566777778776667778887654 58999999877643
No 288
>PRK07409 threonine synthase; Validated
Probab=20.14 E-value=2.4e+02 Score=22.44 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 89 EQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 89 ~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
..+-..|..+|+++.+.+-.+..+...+ +..+.++|++++.|
T Consensus 91 ~alA~~a~~~G~~~~ivvP~~~~~~~k~-~~~~~~GA~Vi~~~ 132 (353)
T PRK07409 91 ASAAAYAARAGLKAFVLIPEGKIALGKL-AQAVMYGAEIIQID 132 (353)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCchhhH-HHHHhcCCEEEEEC
Confidence 3567788899999887776663233334 67788999988764
No 289
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=20.06 E-value=3.6e+02 Score=22.39 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=33.3
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCcee
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKI 56 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~ 56 (131)
.+-+-|++|.+ ...-.+|+.++.+- .+-++.+.|..++|.|.-+
T Consensus 201 ~~~~~vp~d~~-G~~~e~le~~~~~~------~~k~~y~~P~~qNPtG~tm 244 (459)
T COG1167 201 ARVIPVPVDED-GIDPEALEEALAQW------KPKAVYVTPTFQNPTGVTM 244 (459)
T ss_pred CcEEecCCCCC-CCCHHHHHHHHhhc------CCcEEEECCCCCCCCCCcc
Confidence 56788899987 78899998887543 5667778877788877543
No 290
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.01 E-value=1.8e+02 Score=24.43 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhcCCeEEE-EEEecC-CchhHHHHHHHhcCCCEEEe
Q 036644 85 NVEIEQISKLCQAENIEFEI-EVRPGV-SLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 85 ~~~l~~~~~~c~~~~V~~~~-~v~~G~-~~~~~I~~~a~~~~a~~vVl 130 (131)
...++.++++|+++|+-+-+ .|+.|. +.|..-.-+--....|++++
T Consensus 257 ~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~ 304 (472)
T PRK08742 257 PAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCL 304 (472)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEE
Confidence 44788999999999987755 444554 45655444445677777765
Done!