Query 036644
Match_columns 131
No_of_seqs 102 out of 223
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 06:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mjh_A Protein (ATP-binding do 99.5 5.1E-13 1.7E-17 93.1 13.4 118 1-130 1-126 (162)
2 3s3t_A Nucleotide-binding prot 99.5 2.6E-13 9E-18 92.8 10.9 108 6-130 5-114 (146)
3 3hgm_A Universal stress protei 99.5 7.3E-14 2.5E-18 95.6 6.8 111 7-130 3-116 (147)
4 3idf_A USP-like protein; unive 99.5 5.1E-13 1.7E-17 90.7 10.0 104 7-130 2-107 (138)
5 2dum_A Hypothetical protein PH 99.4 1E-12 3.5E-17 92.4 10.9 113 6-130 5-123 (170)
6 3fg9_A Protein of universal st 99.4 1.5E-12 5E-17 90.4 10.6 106 6-130 15-125 (156)
7 3fdx_A Putative filament prote 99.4 8.2E-13 2.8E-17 90.0 8.6 107 6-130 1-112 (143)
8 2gm3_A Unknown protein; AT3G01 99.4 2.2E-12 7.7E-17 91.1 10.5 114 5-130 4-130 (175)
9 3tnj_A Universal stress protei 99.4 1.8E-12 6.3E-17 89.1 9.4 108 6-130 6-115 (150)
10 1tq8_A Hypothetical protein RV 99.4 1.7E-12 6E-17 91.5 7.9 106 6-130 17-125 (163)
11 2z08_A Universal stress protei 99.3 4.2E-12 1.4E-16 86.3 7.2 102 7-130 3-105 (137)
12 3dlo_A Universal stress protei 99.3 2.9E-11 1E-15 84.5 10.6 96 7-130 25-123 (155)
13 1jmv_A USPA, universal stress 99.3 6.2E-12 2.1E-16 85.5 6.2 105 7-130 3-108 (141)
14 1q77_A Hypothetical protein AQ 99.2 1.3E-11 4.4E-16 83.8 6.8 107 6-130 4-115 (138)
15 3olq_A Universal stress protei 99.2 2.2E-10 7.5E-15 87.5 11.1 109 6-130 7-117 (319)
16 3ab8_A Putative uncharacterize 99.1 1E-10 3.6E-15 87.4 6.8 112 7-130 1-115 (268)
17 3cis_A Uncharacterized protein 99.1 2.6E-10 8.9E-15 87.2 8.9 105 6-130 19-128 (309)
18 3loq_A Universal stress protei 99.1 7.3E-10 2.5E-14 84.0 10.1 106 6-130 22-129 (294)
19 3mt0_A Uncharacterized protein 99.0 2.2E-09 7.6E-14 81.3 9.4 89 6-130 7-95 (290)
20 3mt0_A Uncharacterized protein 99.0 2.1E-09 7E-14 81.4 9.1 102 6-130 134-243 (290)
21 3loq_A Universal stress protei 98.9 5.5E-09 1.9E-13 79.1 9.5 88 6-130 170-257 (294)
22 3olq_A Universal stress protei 98.9 5.8E-09 2E-13 79.5 9.0 108 6-130 156-272 (319)
23 3cis_A Uncharacterized protein 98.8 4.2E-08 1.4E-12 74.8 10.0 101 6-130 171-273 (309)
24 3ab8_A Putative uncharacterize 98.6 1.4E-07 4.7E-12 70.2 7.2 87 6-130 154-240 (268)
25 2l69_A Rossmann 2X3 fold prote 89.4 0.32 1.1E-05 31.6 3.2 41 88-129 15-55 (134)
26 3inp_A D-ribulose-phosphate 3- 81.6 3.4 0.00012 30.7 5.9 39 90-130 184-222 (246)
27 3a2k_A TRNA(Ile)-lysidine synt 77.4 16 0.00056 29.1 9.2 39 6-46 18-56 (464)
28 3cu2_A Ribulose-5-phosphate 3- 63.1 37 0.0013 24.8 7.6 39 90-130 176-216 (237)
29 1wy5_A TILS, hypothetical UPF0 61.8 48 0.0016 24.8 10.9 39 6-46 24-63 (317)
30 4b6a_O 60S ribosomal protein L 59.9 7.4 0.00025 28.2 3.2 40 1-46 1-40 (199)
31 1ni5_A Putative cell cycle pro 57.8 22 0.00076 28.1 6.0 39 6-46 13-52 (433)
32 3umv_A Deoxyribodipyrimidine p 57.1 34 0.0011 27.9 7.0 40 88-131 97-136 (506)
33 2ywx_A Phosphoribosylaminoimid 53.8 39 0.0013 23.4 6.0 42 88-129 15-56 (157)
34 2xry_A Deoxyribodipyrimidine p 53.5 66 0.0023 25.6 8.2 41 88-131 94-134 (482)
35 3ctl_A D-allulose-6-phosphate 53.5 61 0.0021 23.4 8.4 39 90-130 156-194 (231)
36 2x5n_A SPRPN10, 26S proteasome 52.5 18 0.00062 25.3 4.2 38 6-45 2-54 (192)
37 2fb6_A Conserved hypothetical 51.7 8.2 0.00028 25.1 2.1 41 1-44 4-47 (117)
38 3i8o_A KH domain-containing pr 49.7 24 0.00082 24.0 4.3 42 87-128 59-110 (142)
39 3kbq_A Protein TA0487; structu 47.3 34 0.0011 23.8 4.9 40 90-130 27-68 (172)
40 1y5e_A Molybdenum cofactor bio 47.3 41 0.0014 22.9 5.3 39 91-130 36-78 (169)
41 3p9x_A Phosphoribosylglycinami 47.0 36 0.0012 24.5 5.1 41 90-130 43-87 (211)
42 3oow_A Phosphoribosylaminoimid 44.6 72 0.0025 22.3 6.2 42 88-129 21-65 (166)
43 2is8_A Molybdopterin biosynthe 44.2 40 0.0014 22.8 4.8 40 90-130 25-68 (164)
44 4grd_A N5-CAIR mutase, phospho 43.7 68 0.0023 22.6 5.9 40 90-129 30-72 (173)
45 3kuu_A Phosphoribosylaminoimid 43.4 68 0.0023 22.6 5.9 41 89-129 29-72 (174)
46 1xmp_A PURE, phosphoribosylami 43.0 72 0.0025 22.3 6.0 41 89-129 28-71 (170)
47 4b4k_A N5-carboxyaminoimidazol 43.0 71 0.0024 22.6 6.0 42 88-129 38-82 (181)
48 1u11_A PURE (N5-carboxyaminoim 41.8 75 0.0026 22.5 6.0 42 88-129 37-81 (182)
49 3n2n_F Anthrax toxin receptor 41.8 52 0.0018 21.7 5.1 37 5-44 6-50 (185)
50 1shu_X Anthrax toxin receptor 41.7 50 0.0017 21.7 5.0 38 6-44 6-49 (182)
51 3iwt_A 178AA long hypothetical 41.5 72 0.0025 21.6 5.9 39 91-130 45-87 (178)
52 1mkz_A Molybdenum cofactor bio 41.4 65 0.0022 22.0 5.6 39 91-130 33-75 (172)
53 2kl0_A Putative thiamin biosyn 41.0 14 0.00047 22.0 1.8 35 6-45 28-62 (73)
54 2j4d_A Cryptochrome 3, cryptoc 40.7 97 0.0033 25.1 7.4 41 88-131 102-142 (525)
55 3rg8_A Phosphoribosylaminoimid 39.7 64 0.0022 22.3 5.3 42 88-129 18-63 (159)
56 2x31_A Magnesium-chelatase 60 38.7 37 0.0013 22.7 4.0 39 6-45 5-50 (189)
57 3trh_A Phosphoribosylaminoimid 38.4 60 0.002 22.7 5.0 42 88-129 22-66 (169)
58 3qll_A Citrate lyase; beta bar 38.0 18 0.00062 27.6 2.4 27 103-131 47-73 (316)
59 4b4u_A Bifunctional protein fo 37.7 50 0.0017 25.3 4.8 39 88-126 71-109 (303)
60 3q0i_A Methionyl-tRNA formyltr 36.7 47 0.0016 25.3 4.6 38 90-130 54-91 (318)
61 1tyg_B YJBS; alpha beta barrel 36.5 19 0.00065 22.3 1.9 35 6-45 50-84 (87)
62 2j07_A Deoxyribodipyrimidine p 36.0 66 0.0023 25.2 5.5 41 88-131 54-94 (420)
63 3o6c_A PNP synthase, pyridoxin 36.0 83 0.0028 23.6 5.7 39 88-130 113-151 (260)
64 3ors_A N5-carboxyaminoimidazol 35.8 1.1E+02 0.0037 21.3 6.0 42 88-129 19-63 (163)
65 3rfq_A Pterin-4-alpha-carbinol 35.8 86 0.003 21.9 5.6 40 90-130 53-95 (185)
66 1fmt_A Methionyl-tRNA FMet for 35.5 54 0.0018 24.9 4.8 38 90-130 50-87 (314)
67 1jq5_A Glycerol dehydrogenase; 35.5 75 0.0026 24.2 5.7 40 90-129 49-91 (370)
68 1uuy_A CNX1, molybdopterin bio 35.4 78 0.0027 21.4 5.2 31 99-130 43-77 (167)
69 4ehx_A Tetraacyldisaccharide 4 35.2 24 0.00083 26.8 2.7 26 106-131 113-138 (315)
70 2m1z_A LMO0427 protein; homolo 35.2 19 0.00065 23.2 1.9 40 90-130 24-63 (106)
71 2g2c_A Putative molybdenum cof 35.1 52 0.0018 22.3 4.3 35 95-130 38-75 (167)
72 1u3d_A Cryptochrome 1 apoprote 34.9 61 0.0021 26.1 5.3 41 88-130 67-107 (509)
73 3lp6_A Phosphoribosylaminoimid 34.6 99 0.0034 21.7 5.6 42 88-129 23-67 (174)
74 3qz6_A HPCH/HPAI aldolase; str 34.2 48 0.0016 24.4 4.2 38 92-131 7-44 (261)
75 3exr_A RMPD (hexulose-6-phosph 34.2 40 0.0014 24.1 3.7 36 1-44 1-36 (221)
76 1to3_A Putative aldolase YIHT; 34.1 1E+02 0.0036 23.1 6.2 42 87-128 143-194 (304)
77 1ryj_A Unknown; beta/alpha pro 34.0 23 0.00079 20.6 2.0 30 6-44 37-66 (70)
78 3mfq_A TROA, high-affinity zin 33.4 58 0.002 24.1 4.6 42 88-130 201-244 (282)
79 3gk0_A PNP synthase, pyridoxin 33.2 83 0.0028 23.8 5.3 39 88-130 144-182 (278)
80 4a26_A Putative C-1-tetrahydro 32.8 66 0.0023 24.5 4.8 37 90-126 57-93 (300)
81 4a5o_A Bifunctional protein fo 32.3 69 0.0024 24.2 4.8 37 90-126 55-91 (286)
82 2pjk_A 178AA long hypothetical 32.1 1.1E+02 0.0039 20.9 5.7 40 90-130 44-87 (178)
83 1jlj_A Gephyrin; globular alph 31.2 1E+02 0.0034 21.5 5.3 39 91-130 39-84 (189)
84 4ewi_A Nacht, LRR and PYD doma 31.2 15 0.00051 24.0 0.8 18 13-31 3-20 (113)
85 3l07_A Bifunctional protein fo 31.0 68 0.0023 24.2 4.6 37 90-126 54-90 (285)
86 2pbq_A Molybdenum cofactor bio 30.4 97 0.0033 21.2 5.1 32 97-130 39-74 (178)
87 3i42_A Response regulator rece 30.4 90 0.0031 18.7 4.6 16 116-131 39-54 (127)
88 2vl6_A SSO MCM N-TER, minichro 30.3 26 0.00089 25.8 2.1 30 6-47 210-239 (268)
89 4ds3_A Phosphoribosylglycinami 30.0 96 0.0033 22.1 5.1 39 92-130 50-92 (209)
90 1o4v_A Phosphoribosylaminoimid 29.7 1.5E+02 0.0051 21.0 6.2 40 90-129 31-73 (183)
91 3i18_A LMO2051 protein; alpha- 29.1 92 0.0032 18.8 4.4 33 8-42 28-60 (100)
92 2kyr_A Fructose-like phosphotr 29.1 29 0.001 22.6 2.0 40 90-130 27-66 (111)
93 1dxe_A 2-dehydro-3-deoxy-galac 28.8 64 0.0022 23.4 4.1 37 92-131 11-47 (256)
94 2c2x_A Methylenetetrahydrofola 28.8 59 0.002 24.5 3.9 37 90-126 52-88 (281)
95 1a4i_A Methylenetetrahydrofola 28.7 59 0.002 24.8 3.9 37 90-126 55-91 (301)
96 1ltl_A DNA replication initiat 28.5 29 0.00099 25.8 2.1 30 6-47 197-226 (279)
97 2v5j_A 2,4-dihydroxyhept-2-ENE 28.4 71 0.0024 23.8 4.3 38 91-131 30-67 (287)
98 1jey_B KU80; double-strand DNA 28.1 62 0.0021 26.4 4.2 43 1-45 1-60 (565)
99 3f6p_A Transcriptional regulat 28.1 1E+02 0.0034 18.4 4.9 17 115-131 37-53 (120)
100 1f0z_A THis protein; ubiquitin 27.9 19 0.00064 20.6 0.8 35 6-45 29-63 (66)
101 1owl_A Photolyase, deoxyribodi 27.8 99 0.0034 24.7 5.3 40 88-130 59-98 (484)
102 3qk7_A Transcriptional regulat 27.6 1.6E+02 0.0056 20.7 6.6 41 90-130 31-71 (294)
103 1e2b_A Enzyme IIB-cellobiose; 27.6 1E+02 0.0036 19.2 4.5 19 90-108 22-40 (106)
104 3tqq_A Methionyl-tRNA formyltr 27.5 83 0.0029 23.8 4.6 38 90-130 49-86 (314)
105 2vws_A YFAU, 2-keto-3-deoxy su 27.0 79 0.0027 23.2 4.3 37 92-131 10-46 (267)
106 3k9c_A Transcriptional regulat 26.9 1.3E+02 0.0043 21.3 5.4 15 116-131 81-95 (289)
107 3gl9_A Response regulator; bet 26.8 1.1E+02 0.0037 18.4 5.2 17 115-131 37-53 (122)
108 3ngp_A Spectrin alpha chain, b 26.7 70 0.0024 17.3 3.2 37 1-45 1-37 (62)
109 3gi1_A LBP, laminin-binding pr 26.6 99 0.0034 22.8 4.8 40 90-131 219-258 (286)
110 3grc_A Sensor protein, kinase; 26.5 1.1E+02 0.0039 18.6 5.5 17 115-131 41-57 (140)
111 1meo_A Phosophoribosylglycinam 26.2 1.3E+02 0.0044 21.3 5.2 39 91-130 42-85 (209)
112 2r48_A Phosphotransferase syst 26.1 32 0.0011 22.1 1.8 40 90-130 24-63 (106)
113 1n7k_A Deoxyribose-phosphate a 26.1 1.2E+02 0.004 22.1 5.0 41 88-128 122-165 (234)
114 3gt7_A Sensor protein; structu 26.0 1.1E+02 0.0038 19.2 4.6 16 116-131 43-58 (154)
115 1w8s_A FBP aldolase, fructose- 25.9 64 0.0022 23.6 3.6 42 88-129 127-177 (263)
116 3hbm_A UDP-sugar hydrolase; PS 25.7 27 0.00091 26.1 1.5 21 7-27 1-25 (282)
117 1pq4_A Periplasmic binding pro 25.7 1.1E+02 0.0038 22.6 5.0 41 89-131 227-267 (291)
118 3ngx_A Bifunctional protein fo 25.5 75 0.0026 23.9 4.0 36 90-126 47-82 (276)
119 3tqr_A Phosphoribosylglycinami 25.2 1.8E+02 0.0061 20.7 5.8 39 92-130 47-89 (215)
120 1vjk_A Molybdopterin convertin 25.0 48 0.0016 20.4 2.4 27 7-42 66-92 (98)
121 2cu3_A Unknown function protei 25.0 25 0.00084 20.0 0.9 35 6-45 27-61 (64)
122 3m6m_D Sensory/regulatory prot 24.9 1.2E+02 0.004 18.9 4.4 17 115-131 49-65 (143)
123 1m5w_A Pyridoxal phosphate bio 24.8 1.7E+02 0.0058 21.6 5.7 38 89-130 117-154 (243)
124 3p2o_A Bifunctional protein fo 24.8 77 0.0026 23.9 3.9 37 90-126 53-89 (285)
125 1dnp_A DNA photolyase; DNA rep 24.5 67 0.0023 25.7 3.7 42 88-130 58-101 (471)
126 2l97_A HTRA, putative serine p 24.4 92 0.0032 20.1 3.9 34 8-43 78-111 (134)
127 1b0a_A Protein (fold bifunctio 24.2 66 0.0023 24.4 3.4 37 90-126 53-89 (288)
128 3pzy_A MOG; ssgcid, seattle st 23.7 1.2E+02 0.0039 20.6 4.4 39 90-130 31-72 (164)
129 3t6k_A Response regulator rece 23.6 1.3E+02 0.0046 18.3 5.0 16 116-131 40-55 (136)
130 1np7_A DNA photolyase; protein 23.3 1E+02 0.0034 24.7 4.6 41 88-131 67-107 (489)
131 1vpt_A VP39; RNA CAP, poly(A) 23.2 1.1E+02 0.0037 23.9 4.5 28 104-131 78-110 (348)
132 3agj_B Protein pelota homolog; 23.1 47 0.0016 25.6 2.5 19 26-45 26-44 (358)
133 3egc_A Putative ribose operon 23.1 1.5E+02 0.0052 20.7 5.2 41 90-130 29-70 (291)
134 2qi2_A Pelota, cell division p 23.0 42 0.0014 25.9 2.2 20 26-46 24-43 (347)
135 4f11_A Gamma-aminobutyric acid 22.7 1.8E+02 0.006 21.9 5.7 43 87-130 170-212 (433)
136 3l6u_A ABC-type sugar transpor 22.6 1.7E+02 0.0057 20.4 5.3 15 117-131 82-96 (293)
137 3cg0_A Response regulator rece 22.5 1.4E+02 0.0046 18.1 4.3 16 116-131 46-61 (140)
138 3cg4_A Response regulator rece 22.3 1.4E+02 0.0048 18.1 4.5 14 118-131 45-58 (142)
139 2r4q_A Phosphotransferase syst 22.2 33 0.0011 22.1 1.2 40 90-130 24-63 (106)
140 3rqi_A Response regulator prot 21.9 1.7E+02 0.0059 19.0 5.3 17 115-131 42-58 (184)
141 1p1x_A Deoxyribose-phosphate a 21.8 79 0.0027 23.5 3.4 41 88-128 123-167 (260)
142 2fqx_A Membrane lipoprotein TM 21.8 2E+02 0.0067 21.0 5.7 17 115-131 76-93 (318)
143 3vc3_A Beta-cyanoalnine syntha 21.6 1.1E+02 0.0037 23.2 4.3 40 90-131 101-140 (344)
144 2prs_A High-affinity zinc upta 21.5 1.2E+02 0.004 22.3 4.4 15 116-130 215-229 (284)
145 1di6_A MOGA, molybdenum cofact 21.5 1.6E+02 0.0054 20.6 4.8 38 92-130 29-72 (195)
146 2qjg_A Putative aldolase MJ040 21.4 89 0.003 22.5 3.6 43 88-130 134-185 (273)
147 3cx3_A Lipoprotein; zinc-bindi 21.4 1.2E+02 0.0042 22.2 4.5 40 91-130 187-232 (284)
148 3glc_A Aldolase LSRF; TIM barr 21.3 1.8E+02 0.0062 21.8 5.4 43 88-130 160-208 (295)
149 3kcq_A Phosphoribosylglycinami 21.3 1.3E+02 0.0045 21.5 4.4 38 92-130 51-88 (215)
150 3obw_A Protein pelota homolog; 21.3 54 0.0019 25.5 2.5 20 26-46 44-63 (364)
151 1jkx_A GART;, phosphoribosylgl 21.2 1.4E+02 0.0049 21.1 4.6 41 90-130 41-85 (212)
152 3kht_A Response regulator; PSI 21.1 1.5E+02 0.0052 18.1 6.1 16 116-131 43-58 (144)
153 3hv2_A Response regulator/HD d 21.1 1.6E+02 0.0054 18.3 4.6 16 116-131 50-65 (153)
154 3po0_A Small archaeal modifier 21.1 44 0.0015 20.0 1.6 26 8-42 58-83 (89)
155 1mb3_A Cell division response 21.0 1.4E+02 0.0047 17.6 4.6 16 116-131 37-52 (124)
156 3lte_A Response regulator; str 20.8 1.4E+02 0.005 17.7 4.9 16 116-131 42-57 (132)
157 3eod_A Protein HNR; response r 20.8 1.4E+02 0.005 17.7 5.2 17 115-131 42-58 (130)
158 2qxy_A Response regulator; reg 20.7 1.5E+02 0.0052 18.0 4.7 16 116-131 40-55 (142)
159 2kjp_A Uncharacterized protein 20.7 1.2E+02 0.004 18.2 3.6 34 8-43 22-55 (91)
160 2pr7_A Haloacid dehalogenase/e 20.6 56 0.0019 19.9 2.1 38 90-129 79-116 (137)
161 3sr7_A Isopentenyl-diphosphate 20.4 2.2E+02 0.0075 22.0 5.8 42 88-131 195-237 (365)
162 2j48_A Two-component sensor ki 20.3 1.3E+02 0.0046 17.1 4.6 15 117-131 38-52 (119)
163 3mag_A VP39; methylated adenin 20.2 61 0.0021 24.9 2.5 29 103-131 62-95 (307)
164 2vgn_A DOM34; translation term 20.2 58 0.002 25.5 2.5 18 26-44 29-46 (386)
No 1
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.51 E-value=5.1e-13 Score=93.12 Aligned_cols=118 Identities=12% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCcccceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCC----CCCCceeeccCCCcc-ccc---HHHHH
Q 036644 1 MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVN----NPMGYKIRLDSSSMV-RTN---QKIIE 72 (131)
Q Consensus 1 ~~~~~~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~----~~~~~~~~~~~~~~~-~~~---~~~~~ 72 (131)
|++. -++|+||+|+| +.|.+||+||++-. .+.|..|+++||.++.. +..++.. .+... ... .....
T Consensus 1 M~~~-~~~ILv~vD~s-~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 74 (162)
T 1mjh_A 1 MSVM-YKKILYPTDFS-ETAEIALKHVKAFK-TLKAEEVILLHVIDEREIKKRDIFSLLL---GVAGLNKSVEEFENELK 74 (162)
T ss_dssp --CC-CCEEEEECCSC-HHHHHHHHHHHHTC-CSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHH
T ss_pred Cccc-cceEEEEeCCC-HHHHHHHHHHHHHH-hhcCCeEEEEEEecCccccccccccccc---cccccccchhhhHHHHH
Confidence 6664 78999999999 67999999999655 67788999999987430 1001110 00000 010 11121
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 73 EHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
++..+..+. .|+++.+.++..|+++++.+..|+ +.+.|++.|++.++|+|||
T Consensus 75 ~~~~~~~~~-----~l~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~ 126 (162)
T 1mjh_A 75 NKLTEEAKN-----KMENIKKELEDVGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIM 126 (162)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-----HHHHHHHHHHHcCCceEEEEcCCC-HHHHHHHHHHHcCCCEEEE
Confidence 222222222 366788888889999999999996 5778999999999999997
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.50 E-value=2.6e-13 Score=92.81 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=78.1
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
-++|+|++|+| +.|.+||+||+.-. .+.|..|+++||.++.... .+. .+.......++..+..+.
T Consensus 5 ~~~ILv~~D~s-~~s~~al~~A~~la-~~~~a~l~ll~v~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~---- 69 (146)
T 3s3t_A 5 YTNILVPVDSS-DAAQAAFTEAVNIA-QRHQANLTALYVVDDSAYH-TPA--------LDPVLSELLDAEAAHAKD---- 69 (146)
T ss_dssp CCEEEEECCSS-HHHHHHHHHHHHHH-HHHTCEEEEEEEEECCCCC-CGG--------GHHHHHHHHHHHHHHHHH----
T ss_pred cceEEEEcCCC-HHHHHHHHHHHHHH-HhcCCEEEEEEEecCcccc-ccc--------cccccHHHHHHHHHHHHH----
Confidence 57999999999 67999999999655 5678999999999753221 100 111111221222222222
Q ss_pred HHHHHHHHHHHhcCC-eEEEEEEecCCchhHHHH-HHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENI-EFEIEVRPGVSLKTVAVR-VAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V-~~~~~v~~G~~~~~~I~~-~a~~~~a~~vVl 130 (131)
.|+++.+.+++.|+ ++++.+..|+ +.+.|++ .|++.++|+|||
T Consensus 70 -~l~~~~~~~~~~g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~ 114 (146)
T 3s3t_A 70 -AMRQRQQFVATTSAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVL 114 (146)
T ss_dssp -HHHHHHHHHTTSSCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEE
T ss_pred -HHHHHHHHHHhcCCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEE
Confidence 36788889988999 9999999996 5668999 999999999997
No 3
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.47 E-value=7.3e-14 Score=95.58 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=76.1
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChH
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNV 86 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (131)
++|+||+|+| +.|.+|++||++-. .+.|..|+++|+.++.....++.... .........+.. .+..+.
T Consensus 3 ~~ILv~vD~s-~~s~~al~~A~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~----- 70 (147)
T 3hgm_A 3 NRIMVPVDGS-KGAVKALEKGVGLQ-QLTGAELYILCVFKHHSLLEASLSMA-RPEQLDIPDDAL----KDYATE----- 70 (147)
T ss_dssp SEEEEECCSB-HHHHHHHHHHHHHH-HHHCCEEEEEEEECCHHHHHHTBSSC-CCGGGCCCTTHH----HHHHHH-----
T ss_pred ceEEEEeCCC-HHHHHHHHHHHHHH-HhcCCEEEEEEEecCccccccccccc-ChhhhhhHHHHH----HHHHHH-----
Confidence 6899999999 67999999999655 66789999999987422111111000 000000111111 121122
Q ss_pred HHHHHHHHHHhcCCeE---EEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEF---EIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~---~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++.+.+++.|+++ +..+..|+ +.+.|++.|++.++|+|||
T Consensus 71 ~l~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~ 116 (147)
T 3hgm_A 71 IAVQAKTRATELGVPADKVRAFVKGGR-PSRTIVRFARKRECDLVVI 116 (147)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhcCCCccceEEEEecCC-HHHHHHHHHHHhCCCEEEE
Confidence 2667888898999988 98999995 5678999999999999997
No 4
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.46 E-value=5.1e-13 Score=90.69 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=74.4
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcc-cCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHH-HHHHhhhC
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLS-LKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHIS-RKKEEYQT 84 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~-~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 84 (131)
++|+|++|+| +.|.+|++||++ ++ .+.|..|+++||.++.... .. .+.......++.. +..+.
T Consensus 2 ~~ILv~~D~s-~~s~~al~~a~~-la~~~~~a~l~ll~v~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~--- 66 (138)
T 3idf_A 2 KKLLFAIDDT-EACERAAQYILD-MFGKDADCTLTLIHVKPEFMLY---GE-------AVLAAYDEIEMKEEEKAKL--- 66 (138)
T ss_dssp EEEEEECCSS-HHHHHHHHHHHH-HHTTCTTEEEEEEEEECCCCCC---HH-------HHHHHHHHHHHHHHHHHHH---
T ss_pred ceEEEEeCCC-HHHHHHHHHHHH-HhccCCCCEEEEEEEecCCCcc---cc-------cccCcHHHHHHHHHHHHHH---
Confidence 6899999999 679999999995 53 4678899999998743211 10 0001111112222 22222
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 85 NVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 85 ~~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++.+.+++.|+++++.+..|+ +.+.|++.|+ ++|+|||
T Consensus 67 --~l~~~~~~~~~~g~~~~~~v~~g~-~~~~I~~~a~--~~dliV~ 107 (138)
T 3idf_A 67 --LTQKFSTFFTEKGINPFVVIKEGE-PVEMVLEEAK--DYNLLII 107 (138)
T ss_dssp --HHHHHHHHHHTTTCCCEEEEEESC-HHHHHHHHHT--TCSEEEE
T ss_pred --HHHHHHHHHHHCCCCeEEEEecCC-hHHHHHHHHh--cCCEEEE
Confidence 377888899889999999999996 5678999999 9999997
No 5
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.44 E-value=1e-12 Score=92.36 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=75.5
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCc-eee---ccCCCcccccHHHHHHHHHHHHHh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGY-KIR---LDSSSMVRTNQKIIEEHISRKKEE 81 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
-++|+|++|+| +.|.+||+||+.-. .+.|..|+++||.++...++.. .+. ...+....... ++..+..+.
T Consensus 5 ~~~ILv~vD~s-~~s~~al~~A~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 78 (170)
T 2dum_A 5 FRKVLFPTDFS-EGAYRAVEVFEKRN-KMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIK----EKLKEEASR 78 (170)
T ss_dssp CSEEEEECCSS-HHHHHHHHHHHHHC-CSCCSEEEEEEEEETTGGGCCC------------CCTTSH----HHHHHHHHH
T ss_pred cceEEEEecCC-HHHHHHHHHHHHHH-HhcCCEEEEEEEecCccccccccccccccccccccHHHHH----HHHHHHHHH
Confidence 58999999999 67999999999655 6788899999998743211110 000 00000001111 122222222
Q ss_pred hhChHHHHHHHHHHHhcCCeEEE--EEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 82 YQTNVEIEQISKLCQAENIEFEI--EVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 82 ~~~~~~l~~~~~~c~~~~V~~~~--~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+.+.+.++..|++++. .+..|+ +.+.|++.|++.++|+|||
T Consensus 79 -----~l~~~~~~~~~~g~~~~~~~~~~~g~-~~~~I~~~a~~~~~DlIV~ 123 (170)
T 2dum_A 79 -----KLQEKAEEVKRAFRAKNVRTIIRFGI-PWDEIVKVAEEENVSLIIL 123 (170)
T ss_dssp -----HHHHHHHHHHHHTTCSEEEEEEEEEC-HHHHHHHHHHHTTCSEEEE
T ss_pred -----HHHHHHHHHHHcCCceeeeeEEecCC-hHHHHHHHHHHcCCCEEEE
Confidence 256777788788998887 888896 5668999999999999997
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.42 E-value=1.5e-12 Score=90.35 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=75.7
Q ss_pred ceEEEEEEe--CCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhh
Q 036644 6 CERVVVIQD--ASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQ 83 (131)
Q Consensus 6 ~r~VvVavD--~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
-++|+||+| +| +.|.+|++||++-. .+.|..|+++||.++...+ .+. .......++..+..+.
T Consensus 15 ~~~ILv~vD~~~s-~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~-~~~----------~~~~~~~~~~~~~~~~-- 79 (156)
T 3fg9_A 15 YRRILLTVDEDDN-TSSERAFRYATTLA-HDYDVPLGICSVLESEDIN-IFD----------SLTPSKIQAKRKHVED-- 79 (156)
T ss_dssp CC-EEEECCSCCC-HHHHHHHHHHHHHH-HHHTCCEEEEEEECCCCTT-CCC----------SSHHHHHHHHHHHHHH--
T ss_pred CceEEEEECCCCC-HHHHHHHHHHHHHH-HhcCCEEEEEEEEeCCCcc-ccc----------cCCHHHHHHHHHHHHH--
Confidence 489999999 99 67999999999654 5678899999999753211 110 1111221222222222
Q ss_pred ChHHHHHHHHHHHhcCC-eEEEEEEe-cCCchhHHHHH-HHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAENI-EFEIEVRP-GVSLKTVAVRV-AKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~V-~~~~~v~~-G~~~~~~I~~~-a~~~~a~~vVl 130 (131)
.|+++.+.+++.|+ .+++.+.. |+ +.+.|++. |++.++|+|||
T Consensus 80 ---~l~~~~~~~~~~g~~~~~~~v~~~g~-~~~~I~~~~a~~~~~DlIV~ 125 (156)
T 3fg9_A 80 ---VVAEYVQLAEQRGVNQVEPLVYEGGD-VDDVILEQVIPEFKPDLLVT 125 (156)
T ss_dssp ---HHHHHHHHHHHHTCSSEEEEEEECSC-HHHHHHHTHHHHHCCSEEEE
T ss_pred ---HHHHHHHHHHHcCCCceEEEEEeCCC-HHHHHHHHHHHhcCCCEEEE
Confidence 36678888988999 59999999 85 56789999 99999999997
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.41 E-value=8.2e-13 Score=90.00 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=70.6
Q ss_pred ceEEEEEEeCCccc--ChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhh
Q 036644 6 CERVVVIQDASRDV--NSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQ 83 (131)
Q Consensus 6 ~r~VvVavD~Ske~--S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
+++|+||+|+| +. |.+|++||+.-. .+.|..|+++||.++.....++.. .........++. .+.
T Consensus 1 ~k~ILv~vD~s-~~~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~------~~~~~~~~~~~~----~~~-- 66 (143)
T 3fdx_A 1 SNAILVPIDIS-DKEFTERIISHVESEA-RIDDAEVHFLTVIPSLPYYASLGM------AYTAELPGMDEL----REG-- 66 (143)
T ss_dssp CCEEEEECCTT-CSSCCTTHHHHHHHHH-HHHTCEEEEEEEECC----------------------CHHHH----HHH--
T ss_pred CCEEEEEecCC-hHhhHHHHHHHHHHHH-HhcCCeEEEEEEecCCcccccccc------cccchhhhHHHH----HHH--
Confidence 47999999999 78 999999999654 667899999999975321111110 011111111111 111
Q ss_pred ChHHHHHHHHHHHhcC---CeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAEN---IEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~---V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++.+.+++++.+ +.+++.+..|+ +.+.|++.|++.++|+|||
T Consensus 67 ---~~~~l~~~~~~~~~~~~~v~~~~~~g~-~~~~I~~~a~~~~~dliV~ 112 (143)
T 3fdx_A 67 ---SETQLKEIAKKFSIPEDRMHFHVAEGS-PKDKILALAKSLPADLVII 112 (143)
T ss_dssp ---HHHHHHHHHTTSCCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEE
T ss_pred ---HHHHHHHHHHHcCCCCCceEEEEEecC-hHHHHHHHHHHhCCCEEEE
Confidence 2446677777765 45788888995 5778999999999999997
No 8
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.40 E-value=2.2e-12 Score=91.11 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=73.9
Q ss_pred cceEEEEEEeCCcc---------cChhHHhhHhhhcccC---CCCEEEEEEEecCCCCCCCceeeccCCCcccc-cHHHH
Q 036644 5 LCERVVVIQDASRD---------VNSSAIGGILKNLSLK---HGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRT-NQKII 71 (131)
Q Consensus 5 ~~r~VvVavD~Ske---------~S~~Al~WaL~nv~~~---~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 71 (131)
..++|+|++|+| + .|.+||+||++.+ .+ .|..|+++||.++... ++.... +....+ ....+
T Consensus 4 ~~~~ILv~vD~s-~~~~~~~~~~~s~~al~~a~~la-~~~~~~~a~l~ll~v~~~~~~--~~~~~~--~~~~~~~~~~~~ 77 (175)
T 2gm3_A 4 EPTKVMVAVNAS-TIKDYPNPSISCKRAFEWTLEKI-VRSNTSDFKILLLHVQVVDED--GFDDVD--SIYASPEDFRDM 77 (175)
T ss_dssp -CEEEEEECCBC-SSSCTTCBCHHHHHHHHHHHHHT-TTTCTTSEEEEEEEEEC--------------CCCCSHHHHHHH
T ss_pred CccEEEEEECCC-cccccccccHHHHHHHHHHHHHh-hcccCCCCEEEEEEEeecccc--cccccc--cccCCHHHHHHH
Confidence 368999999999 6 7999999999877 45 3679999999863221 111000 000000 00111
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 72 EEHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++..+..+. .|+.+.+.++..|+.+++.+..|+ +.+.|++.|++.++|+|||
T Consensus 78 ~~~~~~~~~~-----~l~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVm 130 (175)
T 2gm3_A 78 RQSNKAKGLH-----LLEFFVNKCHEIGVGCEAWIKTGD-PKDVICQEVKRVRPDFLVV 130 (175)
T ss_dssp TTSHHHHHHH-----HHHHHHHHHHHHTCEEEEEEEESC-HHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHCCCceEEEEecCC-HHHHHHHHHHHhCCCEEEE
Confidence 1111111111 366778888889999999999996 5778999999999999998
No 9
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.39 E-value=1.8e-12 Score=89.05 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=69.2
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCC-CCceeeccCCCcccccHHHHHHHHHHHHHhhhC
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNP-MGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQT 84 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
-++|+|++|+| +.|.+|++||++-. .+.|..|+++||.++...+ ..+... .+.......+.. .+..+.
T Consensus 6 ~~~ILv~vD~s-~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~--- 74 (150)
T 3tnj_A 6 YHHILLAVDFS-SEDSQVVQKVRNLA-SQIGARLSLIHVLDNIPMPDTPYGTA--IPLDTETTYDAM----LDVEKQ--- 74 (150)
T ss_dssp CSEEEEECCCS-TTHHHHHHHHHHHH-HHHTCEEEEEEEEC--------CTTC--CCSSSCCCHHHH----HHHHHH---
T ss_pred cceEEEEeCCC-HHHHHHHHHHHHHH-hhcCCEEEEEEEEcCccccccccccc--cCcCHHHHHHHH----HHHHHH---
Confidence 47999999999 67999999999655 6678999999999753221 011100 000011111221 121111
Q ss_pred hHHHHHHHHHHHhcCCe-EEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 85 NVEIEQISKLCQAENIE-FEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 85 ~~~l~~~~~~c~~~~V~-~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+.+++++.++. ++..+..|+ +.+.|++.|++.++|+|||
T Consensus 75 -----~l~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~ 115 (150)
T 3tnj_A 75 -----KLSQIGNTLGIDPAHRWLVWGE-PREEIIRIAEQENVDLIVV 115 (150)
T ss_dssp -----HHHHHHHHHTCCGGGEEEEESC-HHHHHHHHHHHTTCSEEEE
T ss_pred -----HHHHHHHHcCCCcceEEEecCC-HHHHHHHHHHHcCCCEEEE
Confidence 345556666877 477888896 5668999999999999997
No 10
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.36 E-value=1.7e-12 Score=91.51 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=71.0
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEE--EEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFL--AVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQ 83 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~ll--hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
.++|+||+|+| +.|.+||+||++-. . .|..|+++ ||.++...+.++. .+ .. .+.++..+..+.
T Consensus 17 ~~~ILv~vD~s-~~s~~al~~A~~lA-~-~~a~l~ll~a~v~~~~~~~~~~~--------~~-~~-~~~~~~~~~~~~-- 81 (163)
T 1tq8_A 17 YKTVVVGTDGS-DSSMRAVDRAAQIA-G-ADAKLIIASAYLPQHEDARAADI--------LK-DE-SYKVTGTAPIYE-- 81 (163)
T ss_dssp CCEEEEECCSS-HHHHHHHHHHHHHH-T-TTSEEEEEEECCC------------------------------CCTHHH--
T ss_pred CCEEEEEcCCC-HHHHHHHHHHHHHh-C-CCCEEEEEEeeeccCcccccccc--------cc-cH-HHHHHHHHHHHH--
Confidence 58999999999 67999999999655 5 88899999 8775321101110 00 00 111111111111
Q ss_pred ChHHHHHHHHHHHhcCCe-EEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAENIE-FEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~V~-~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+++.+.++..+++ +++.+..|+ +.+.|++.|++.++|+|||
T Consensus 82 ---~l~~~~~~~~~~gv~~v~~~v~~G~-~~~~I~~~a~~~~~DLIV~ 125 (163)
T 1tq8_A 82 ---ILHDAKERAHNAGAKNVEERPIVGA-PVDALVNLADEEKADLLVV 125 (163)
T ss_dssp ---HHHHHHHHHHTTTCCEEEEEEECSS-HHHHHHHHHHHTTCSEEEE
T ss_pred ---HHHHHHHHHHHcCCCeEEEEEecCC-HHHHHHHHHHhcCCCEEEE
Confidence 366778888888998 999999996 5778999999999999997
No 11
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.31 E-value=4.2e-12 Score=86.25 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=66.4
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChH
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNV 86 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (131)
++|+|++|+| +.|.+|++||.+-. .+.|..|+++||.++. +.++.. . . .....++..+..+.
T Consensus 3 ~~ILv~~D~s-~~s~~al~~a~~la-~~~~a~l~ll~v~~~~--~~~~~~------~-~--~~~~~~~~~~~~~~----- 64 (137)
T 2z08_A 3 KTILLAYDGS-EHARRAAEVAKAEA-EAHGARLIVVHAYEPV--PDYLGE------P-F--FEEALRRRLERAEG----- 64 (137)
T ss_dssp SEEEEECCSS-HHHHHHHHHHHHHH-HHHTCEEEEEEEECC-------------------------CHHHHHHHH-----
T ss_pred ceEEEEeCCC-HHHHHHHHHHHHHH-hhcCCEEEEEEEecCC--Cccccc------c-c--hHHHHHHHHHHHHH-----
Confidence 6899999999 67999999999655 5678899999998632 111110 0 0 00111111111111
Q ss_pred HHHHHHHHHHhcCC-eEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENI-EFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V-~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+.+.++..|+ ++++.+..|+ +.+.|++.|++.++|+|||
T Consensus 65 ---~l~~~~~~~g~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~ 105 (137)
T 2z08_A 65 ---VLEEARALTGVPKEDALLLEGV-PAEAILQAARAEKADLIVM 105 (137)
T ss_dssp ---HHHHHHHHHCCCGGGEEEEESS-HHHHHHHHHHHTTCSEEEE
T ss_pred ---HHHHHHHHcCCCccEEEEEecC-HHHHHHHHHHHcCCCEEEE
Confidence 22334444788 7888888895 5678999999999999997
No 12
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.29 E-value=2.9e-11 Score=84.49 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=70.4
Q ss_pred eEEEEEEeC-CcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 7 ERVVVIQDA-SRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 7 r~VvVavD~-Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
++|+||+|+ | +.|.+|++||++-. .+.|..|+++||.++... . . +...++ .+.
T Consensus 25 ~~ILv~vD~~s-~~s~~al~~A~~la-~~~~a~l~llhV~~~~~~------------~---~-~~~~~~----~~~---- 78 (155)
T 3dlo_A 25 MPIVVAVDKKS-DRAERVLRFAAEEA-RLRGVPVYVVHSLPGGGR------------T---K-DEDIIE----AKE---- 78 (155)
T ss_dssp CCEEEECCSSS-HHHHHHHHHHHHHH-HHHTCCEEEEEEECCSTT------------S---C-HHHHHH----HHH----
T ss_pred CeEEEEECCCC-HHHHHHHHHHHHHH-HhcCCEEEEEEEEcCCCc------------c---c-HHHHHH----HHH----
Confidence 789999999 9 67999999999655 567889999999863210 0 0 111111 111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEE--ecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVR--PGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~--~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+.+.+.+++.++.+++.+. .|+ +.+.|++.|++.++|+|||
T Consensus 79 -~l~~~~~~~~~~g~~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIV~ 123 (155)
T 3dlo_A 79 -TLSWAVSIIRKEGAEGEEHLLVRGKE-PPDDIVDFADEVDAIAIVI 123 (155)
T ss_dssp -HHHHHHHHHHHTTCCEEEEEEESSSC-HHHHHHHHHHHTTCSEEEE
T ss_pred -HHHHHHHHHHhcCCCceEEEEecCCC-HHHHHHHHHHHcCCCEEEE
Confidence 255778888888988887543 475 5678999999999999997
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.27 E-value=6.2e-12 Score=85.54 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=68.7
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChH
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNV 86 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (131)
++|+|++|+| +.|.+||+||+.-. .+.|..|+++||.++. |..+.. ..........++..+ .
T Consensus 3 ~~ILv~~D~s-~~s~~al~~a~~la-~~~~a~l~ll~v~~~~--~~~~~~------~~~~~~~~~~~~~~~---~----- 64 (141)
T 1jmv_A 3 KHILVAVDLS-EESPILLKKAVGIA-KRHDAKLSIIHVDVNF--SDLYTG------LIDVNMSSMQDRIST---E----- 64 (141)
T ss_dssp SEEEEEECCS-TTHHHHHHHHHHHH-HHHTCEEEEEEEEECC--GGGCCC------CEEHHHHHHTTCCCC---H-----
T ss_pred ceEEEEecCc-hhhHHHHHHHHHHH-HhcCCEEEEEEEecCc--hhhhcc------ccccchHHHHHHHHH---H-----
Confidence 6899999999 67999999999655 6678899999998531 111100 001001111000000 0
Q ss_pred HHHHHHHHHHhcCCeE-EEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEF-EIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~-~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
..+.+.+.+++.|+.+ +..+..|+ +.+.|++.|++.++|+|||
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~ 108 (141)
T 1jmv_A 65 TQKALLDLAESVDYPISEKLSGSGD-LGQVLSDAIEQYDVDLLVT 108 (141)
T ss_dssp HHHHHHHHHHHSSSCCCCEEEEEEC-HHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEecCC-HHHHHHHHHHhcCCCEEEE
Confidence 1224456666778876 56777886 5668999999999999997
No 14
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.25 E-value=1.3e-11 Score=83.79 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=69.7
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe-cC-C-CCCCCceeeccCCCcccccHHHHHHHHHHHHHhh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL-HQ-V-NNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEY 82 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
-++|+|++|+| +.|.+||+||++-. .+.|..|+++|+. +. + .+.++. ... +. ..+.. ++..+..+.
T Consensus 4 ~~~ILv~~D~s-~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~---~~~--~~--~~~~~-~~~~~~~~~- 72 (138)
T 1q77_A 4 MKVLLVLTDAY-SDCEKAITYAVNFS-EKLGAELDILAVLEDVYNLERANVT---FGL--PF--PPEIK-EESKKRIER- 72 (138)
T ss_dssp CEEEEEEESTT-CCCHHHHHHHHHHH-TTTCCEEEEEEECHHHHHHHHHHHH---HCC--CC--CTHHH-HHHHHHHHH-
T ss_pred ccEEEEEccCC-HhHHHHHHHHHHHH-HHcCCeEEEEEEecccccccccccc---cCC--CC--ChHHH-HHHHHHHHH-
Confidence 47999999999 67999999999655 6778899999998 52 1 100111 000 00 01111 222222222
Q ss_pred hChHHHHHHHHHH--HhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 83 QTNVEIEQISKLC--QAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 83 ~~~~~l~~~~~~c--~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+++ +.| ...| ++++.+..|+ +.+.|++.|++.++|+|||
T Consensus 73 ----~l~~~-~~~~~~~~~-~~~~~~~~g~-~~~~I~~~a~~~~~dliV~ 115 (138)
T 1q77_A 73 ----RLREV-WEKLTGSTE-IPGVEYRIGP-LSEEVKKFVEGKGYELVVW 115 (138)
T ss_dssp ----HHHHH-HHHHHSCCC-CCCEEEECSC-HHHHHHHHHTTSCCSEEEE
T ss_pred ----HHHHH-HHHhhccCC-cceEEEEcCC-HHHHHHHHHHhcCCCEEEE
Confidence 25556 553 4556 6777788886 5678999999999999997
No 15
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.18 E-value=2.2e-10 Score=87.47 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=75.6
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCccc-ccHHHHHHHHHHHHHhhhC
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVR-TNQKIIEEHISRKKEEYQT 84 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (131)
-++|+|++|+| +.|..||+||+. ++.+.|-.|+++|+.++...++. ...+ .....+.+...+..+.
T Consensus 7 ~k~ILv~~D~s-~~s~~al~~A~~-lA~~~~a~l~ll~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--- 73 (319)
T 3olq_A 7 YQNLLVVIDPN-QDDQPALRRAVY-IVQRNGGRIKAFLPVYDLSYDMT--------TLLSPDERNAMRKGVINQKTA--- 73 (319)
T ss_dssp SCEEEEECCTT-CSCCHHHHHHHH-HHHHHCCEEEEEEEECCGGGGCT--------TTSCHHHHHHHHHHHHHHHHH---
T ss_pred cceEEEEECCC-cccHHHHHHHHH-HHHHcCCeEEEEEEecccchhhc--------cccChhhHHHHHHHHHHHHHH---
Confidence 37999999999 679999999995 53667789999999863211110 0111 1111221222222222
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEE-ecCCchhHHHHHHHhcCCCEEEe
Q 036644 85 NVEIEQISKLCQAENIEFEIEVR-PGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 85 ~~~l~~~~~~c~~~~V~~~~~v~-~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+.+.+.+...|+.+++.+. .|+ +...|++.|++.++|+|||
T Consensus 74 --~l~~~~~~~~~~~v~~~~~~~~~g~-~~~~i~~~a~~~~~DLiV~ 117 (319)
T 3olq_A 74 --WIKQQARYYLEAGIQIDIKVIWHNR-PYEAIIEEVITDKHDLLIK 117 (319)
T ss_dssp --HHHHHHHHHHHTTCCEEEEEEECSC-HHHHHHHHHHHHTCSEEEE
T ss_pred --HHHHHHHHHhhcCCeEEEEEEecCC-hHHHHHHHHHhcCCCEEEE
Confidence 366777888889999999999 675 5668999999999999998
No 16
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.12 E-value=1e-10 Score=87.37 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=72.4
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHH---HHHHHHHHHHhhh
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKI---IEEHISRKKEEYQ 83 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 83 (131)
++|+|++|+| +.|.+|++||..-. .+.|..|+++|+.++...+ +......+......... ..+...+..+.
T Consensus 1 k~ILv~vD~s-~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 74 (268)
T 3ab8_A 1 MRILLATDGS-PQARGAEALAEWLA-YKLSAPLTVLFVVDTRLAR--IPELLDFGALTVPVPVLRTELERALALRGEA-- 74 (268)
T ss_dssp CCEEEECCSC-GGGHHHHHHHHHHH-HHHTCCEEEEEEEEHHHHT--HHHHC-------CHHHHHHHHHHHHHHHHHH--
T ss_pred CcEEEEcCCC-HHHHHHHHHHHHHH-HHhCCcEEEEEEeccCCcc--cccccCchHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 5899999999 67999999999654 5678899999998642211 00000000000011000 01111121122
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 84 TNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 84 ~~~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++.+.++..|+++++.+..|+ +.+.|++. +.++|+|||
T Consensus 75 ---~l~~~~~~~~~~g~~~~~~~~~g~-~~~~I~~~--~~~~dliV~ 115 (268)
T 3ab8_A 75 ---VLERVRQSALAAGVAVEAVLEEGV-PHEAILRR--ARAADLLVL 115 (268)
T ss_dssp ---HHHHHHHHHHHTTCCEEEEEEEEC-HHHHHHHH--HTTCSEEEE
T ss_pred ---HHHHHHHHHHhCCCCeEEEEecCC-HHHHHHhh--ccCCCEEEE
Confidence 367888889889999999999996 56689888 999999997
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.11 E-value=2.6e-10 Score=87.16 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=72.5
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
.++|+|++|+| +.|.+|++||+.-. .+.|..|+++|+.++...++.. + ... .... +...+..+.
T Consensus 19 ~~~ILv~~D~s-~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~~~~------~-~~~--~~~~-~~~~~~~~~---- 82 (309)
T 3cis_A 19 SLGIIVGIDDS-PAAQVAVRWAARDA-ELRKIPLTLVHAVSPEVATWLE------V-PLP--PGVL-RWQQDHGRH---- 82 (309)
T ss_dssp TTEEEEECCSS-HHHHHHHHHHHHHH-HHHTCCEEEEEECCCCCCCTTC------C-CCC--HHHH-HHHHHHHHH----
T ss_pred CCeEEEEECCC-HHHHHHHHHHHHHH-HhcCCcEEEEEEecCccccccc------C-CCC--chhh-HHHHHHHHH----
Confidence 48999999999 67999999999655 6778899999998632211110 0 011 1111 222222222
Q ss_pred HHHHHHHHHHHhc-----CCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAE-----NIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~-----~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+++.+.+++. ++++++.+..|+ +.+.|++.|+ ++|+|||
T Consensus 83 -~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~--~~DliV~ 128 (309)
T 3cis_A 83 -LIDDALKVVEQASLRAGPPTVHSEIVPAA-AVPTLVDMSK--DAVLMVV 128 (309)
T ss_dssp -HHHHHHHHHHHHCSSSCCSCEEEEEESSC-HHHHHHHHGG--GEEEEEE
T ss_pred -HHHHHHHHHHHhcccCCCceEEEEEecCC-HHHHHHHHhc--CCCEEEE
Confidence 356777777765 899999998996 5668999997 8999997
No 18
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.08 E-value=7.3e-10 Score=84.00 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=73.4
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
-++|+|++|+| +.|.+|++||+. ++.+.|..|+++||.++...+ + .. .+.. ..... ++..+..+.
T Consensus 22 ~~~ILv~vD~s-~~s~~al~~A~~-lA~~~~a~l~ll~v~~~~~~~-~--~~--~~~~---~~~~~-~~~~~~~~~---- 86 (294)
T 3loq_A 22 SNAMLLPTDLS-ENSFKVLEYLGD-FKKVGVEEIGVLFVINLTKLS-T--VS--GGID---IDHYI-DEMSEKAEE---- 86 (294)
T ss_dssp TCEEEEECCSC-TGGGGGGGGHHH-HHHTTCCEEEEECCEECTTC----------CCC---TTHHH-HHHHHHHHH----
T ss_pred hccEEEecCCC-HHHHHHHHHHHH-HHhhcCCEEEEEEEecCcccc-c--cc--cccc---HHHHH-HHHHHHHHH----
Confidence 37999999999 679999999996 536778899999999753221 1 10 0111 11111 222222222
Q ss_pred HHHHHHHHHHHhcCCeEEE-EEE-ecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEI-EVR-PGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~-~v~-~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|+.+.+.+++.|++++. .+. .|++ .+.| .+++.++|+|||
T Consensus 87 -~l~~~~~~~~~~g~~~~~~~v~~~g~~-~~~I--~a~~~~~DliV~ 129 (294)
T 3loq_A 87 -VLPEVAQKIEAAGIKAEVIKPFPAGDP-VVEI--IKASENYSFIAM 129 (294)
T ss_dssp -HHHHHHHHHHHTTCEEEECSSCCEECH-HHHH--HHHHTTSSEEEE
T ss_pred -HHHHHHHHHHHcCCCcceeEeeccCCh-hHhe--eeccCCCCEEEE
Confidence 366888889899999998 777 8865 5567 999999999997
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.99 E-value=2.2e-09 Score=81.28 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=68.3
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
-++|+|++|+| +.|.+|++||+.-- .+.|..|+++|+.++ . ...+.
T Consensus 7 ~~~ILv~~D~s-~~s~~al~~A~~la-~~~~a~l~ll~v~~~----------~-------~~~~~--------------- 52 (290)
T 3mt0_A 7 IRSILVVIEPD-QLEGLALKRAQLIA-GVTQSHLHLLVCEKR----------R-------DHSAA--------------- 52 (290)
T ss_dssp CCEEEEECCSS-CSCCHHHHHHHHHH-HHHCCEEEEEEECSS----------S-------CCHHH---------------
T ss_pred hceEEEEeCCC-ccchHHHHHHHHHH-HhcCCeEEEEEeeCc----------H-------HHHHH---------------
Confidence 47999999999 67999999999544 667789999999751 0 00111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|+++.+.+...|+++++.+..+..+.+.|++.|++.++|+|||
T Consensus 53 --l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~ 95 (290)
T 3mt0_A 53 --LNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIK 95 (290)
T ss_dssp --HHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEE
T ss_pred --HHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEE
Confidence 3344455567899999998865456778999999999999997
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.98 E-value=2.1e-09 Score=81.45 Aligned_cols=102 Identities=11% Similarity=0.107 Sum_probs=68.0
Q ss_pred ceEEEEEEeCCccc-------ChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHH
Q 036644 6 CERVVVIQDASRDV-------NSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRK 78 (131)
Q Consensus 6 ~r~VvVavD~Ske~-------S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (131)
.++|+||+|+| +. |.+|++||++-. .+.|..|+++||.++..... . . +..... ++..+.
T Consensus 134 ~~~Ilva~D~s-~~~~~~~~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~--~----~-----~~~~~~-~~~~~~ 199 (290)
T 3mt0_A 134 GGKILAAVDVG-NNDGEHRSLHAGIISHAYDIA-GLAKATLHVISAHPSPMLSS--A----D-----PTFQLS-ETIEAR 199 (290)
T ss_dssp TCEEEEEECTT-CCSHHHHHHHHHHHHHHHHHH-HHTTCEEEEEEEEC--------------------CHHHH-HHHHHH
T ss_pred CCeEEEEECCC-CcchhhhHHHHHHHHHHHHHH-HHcCCeEEEEEEecCccccc--c----C-----chhHHH-HHHHHH
Confidence 58999999999 55 899999999655 66789999999987422111 0 0 101111 221111
Q ss_pred HHhhhChHHHHHHHHHHHhcCCe-EEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 79 KEEYQTNVEIEQISKLCQAENIE-FEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 79 ~~~~~~~~~l~~~~~~c~~~~V~-~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
. .+.+.+++++.|+. .++.+..|+ +.+.|++.|++.++|+|||
T Consensus 200 ~--------~~~l~~~~~~~g~~~~~~~v~~g~-~~~~I~~~a~~~~~dLiVm 243 (290)
T 3mt0_A 200 Y--------REACRTFQAEYGFSDEQLHIEEGP-ADVLIPRTAQKLDAVVTVI 243 (290)
T ss_dssp H--------HHHHHHHHHHHTCCTTTEEEEESC-HHHHHHHHHHHHTCSEEEE
T ss_pred H--------HHHHHHHHHHcCCCcceEEEeccC-HHHHHHHHHHhcCCCEEEE
Confidence 1 11345566666874 567788895 6779999999999999997
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.92 E-value=5.5e-09 Score=79.13 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=69.4
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
.++|+||+|+| +.|.+|++||+.-. .+.|..|+++|+.++.. . ++
T Consensus 170 ~~~Ilv~~d~s-~~s~~al~~a~~la-~~~~~~l~ll~v~~~~~-----------------~-----~~----------- 214 (294)
T 3loq_A 170 FDRVLVAYDFS-KWADRALEYAKFVV-KKTGGELHIIHVSEDGD-----------------K-----TA----------- 214 (294)
T ss_dssp TSEEEEECCSS-HHHHHHHHHHHHHH-HHHTCEEEEEEECSSSC-----------------C-----HH-----------
T ss_pred CCEEEEEECCC-HHHHHHHHHHHHHh-hhcCCEEEEEEEccCch-----------------H-----HH-----------
Confidence 68999999999 67999999999654 56788999999974210 0 11
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++.+.+.+++.++++++.+..| ++.+.|++.+++.++|+|||
T Consensus 215 -~l~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~ 257 (294)
T 3loq_A 215 -DLRVMEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFM 257 (294)
T ss_dssp -HHHHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEE
T ss_pred -HHHHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEE
Confidence 13345566667899999888888 46779999999999999997
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.90 E-value=5.8e-09 Score=79.52 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=69.6
Q ss_pred ceEEEEEEeCCcc------cChhHHhhHhhhcccCC--CCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHH
Q 036644 6 CERVVVIQDASRD------VNSSAIGGILKNLSLKH--GDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISR 77 (131)
Q Consensus 6 ~r~VvVavD~Ske------~S~~Al~WaL~nv~~~~--gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (131)
.++|+||+|+|.+ .|.+|++||+.-. .+. |..|+++|+.++.....+ ... + ........++..+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la-~~~~~~a~l~ll~v~~~~~~~~~----~~~--~-~~~~~~~~~~~~~ 227 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLS-HRIQKDPDVHLLSAYPVAPINIA----IEL--P-DFDPNLYNNALRG 227 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHH-HHHCSSCCEEEEEEECCCSCSCC----TTC--T-TCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHH-HhccCCCeEEEEEeecCcchhhh----ccC--C-cccHHHHHHHHHH
Confidence 5899999999953 4699999999644 343 889999999874322211 100 0 0111111122222
Q ss_pred HHHhhhChHHHHHHHHHHHhcCCe-EEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 78 KKEEYQTNVEIEQISKLCQAENIE-FEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 78 ~~~~~~~~~~l~~~~~~c~~~~V~-~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.. .+.+..++++.++. ++..+..|+ +.+.|++.|++.++|+|||
T Consensus 228 ~~--------~~~l~~~~~~~~~~~~~~~v~~g~-~~~~I~~~a~~~~~dLiV~ 272 (319)
T 3olq_A 228 QH--------LIAMKELRQKFSIPEEKTHVKEGL-PEQVIPQVCEELNAGIVVL 272 (319)
T ss_dssp HH--------HHHHHHHHHHTTCCGGGEEEEESC-HHHHHHHHHHHTTEEEEEE
T ss_pred HH--------HHHHHHHHHHhCCCcccEEEecCC-cHHHHHHHHHHhCCCEEEE
Confidence 11 12445566677763 456777886 5779999999999999997
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.78 E-value=4.2e-08 Score=74.82 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=66.3
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
.++|+|++|+| +.|.+|++||+.-. .+.|..|+++||.++.. .. .. . +.......++..+ .
T Consensus 171 ~~~Ilv~~D~s-~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~--~~-~~---~----~~~~~~~~~~~~~---~---- 231 (309)
T 3cis_A 171 QAPVLVGVDGS-SASELATAIAFDEA-SRRNVDLVALHAWSDVD--VS-EW---P----GIDWPATQSMAEQ---V---- 231 (309)
T ss_dssp CCCEEEECCSS-HHHHHHHHHHHHHH-HHTTCCEEEEEESCSSC--CT-TC---S----SCCHHHHHHHHHH---H----
T ss_pred CCeEEEEeCCC-hHHHHHHHHHHHHH-HhcCCEEEEEEEeeccc--cc-CC---C----cccHHHHHHHHHH---H----
Confidence 57999999999 67999999999654 56788999999986321 11 00 0 1111111122111 1
Q ss_pred HHHHHHHHHH-Hh-cCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLC-QA-ENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c-~~-~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
++.+.+.+ +. .++.+++.+..|+ +.+.|++.|+ ++|+|||
T Consensus 232 --l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~--~adliV~ 273 (309)
T 3cis_A 232 --LAERLAGWQERYPNVAITRVVVRDQ-PARQLVQRSE--EAQLVVV 273 (309)
T ss_dssp --HHHHHTTHHHHCTTSCEEEEEESSC-HHHHHHHHHT--TCSEEEE
T ss_pred --HHHHHHHHHhhCCCCcEEEEEEcCC-HHHHHHHhhC--CCCEEEE
Confidence 22222222 22 5899998888885 5678999998 9999997
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.57 E-value=1.4e-07 Score=70.23 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=65.3
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhCh
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTN 85 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
.++|+|++|+| +.|.+|++||..-. ...|..|+++|+.++. +.. .+
T Consensus 154 ~~~ilv~~d~s-~~~~~al~~a~~la-~~~~a~l~ll~v~~~~--------------------~~~----~~-------- 199 (268)
T 3ab8_A 154 LEGALLGYDAS-ESAVRALHALAPLA-RALGLGVRVVSVHEDP--------------------ARA----EA-------- 199 (268)
T ss_dssp CCEEEEECCSC-HHHHHHHHHHHHHH-HHHTCCEEEEEECSSH--------------------HHH----HH--------
T ss_pred CCEEEEEECCC-HHHHHHHHHHHHhh-hcCCCEEEEEEEcCcH--------------------HHH----HH--------
Confidence 57999999999 57999999998543 4567789999996410 000 00
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 86 VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 86 ~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++.+.+.+++.|+++++.+..|+ +.+.|++.+++. |+|||
T Consensus 200 -~l~~~~~~l~~~~~~~~~~~~~g~-~~~~i~~~a~~~--dliV~ 240 (268)
T 3ab8_A 200 -WALEAEAYLRDHGVEASALVLGGD-AADHLLRLQGPG--DLLAL 240 (268)
T ss_dssp -HHHHHHHHHHHTTCCEEEEEECSC-HHHHHHHHCCTT--EEEEE
T ss_pred -HHHHHHHHHHHcCCceEEEEeCCC-hHHHHHHHHHhC--CEEEE
Confidence 133556666678999998888885 677899999998 99997
No 25
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=89.44 E-value=0.32 Score=31.64 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vV 129 (131)
|.+++++.+++|.++.+. ......++.|-+.++++||+.+|
T Consensus 15 lrkfkdiikkngfkvrtv-rspqelkdsieelvkkynativv 55 (134)
T 2l69_A 15 LRKFKDIIKKNGFKVRTV-RSPQELKDSIEELVKKYNATIVV 55 (134)
T ss_dssp HHHHHHHHHHTTCEEEEE-CSHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHHhcCceEEEe-cCHHHHHHHHHHHHHHhCCeEEE
Confidence 556677777777666632 22223455666667777777665
No 26
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=81.65 E-value=3.4 Score=30.70 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
++++++.++|.++.+.+--|=.++ .+ ..+.+.+||.+|.
T Consensus 184 ~lr~~~~~~~~~~~I~VDGGI~~~-ti-~~~~~aGAD~~V~ 222 (246)
T 3inp_A 184 EISKWISSTDRDILLEIDGGVNPY-NI-AEIAVCGVNAFVA 222 (246)
T ss_dssp HHHHHHHHHTSCCEEEEESSCCTT-TH-HHHHTTTCCEEEE
T ss_pred HHHHHHHhcCCCeeEEEECCcCHH-HH-HHHHHcCCCEEEE
Confidence 456677777877776677776655 45 8889999999985
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=77.42 E-value=16 Score=29.13 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=28.3
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEec
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~ 46 (131)
..+|+||+-|-.+ |.-.|.+ +..+..+.|..+..+|+.+
T Consensus 18 ~~~vlVa~SGG~D-S~~Ll~l-l~~~~~~~~~~v~avhvdh 56 (464)
T 3a2k_A 18 GAAVIVGVSGGPD-SLALLHV-FLSLRDEWKLQVIAAHVDH 56 (464)
T ss_dssp SSBEEEECCSSHH-HHHHHHH-HHHHHHTTTCBCEEEEEEC
T ss_pred CCEEEEEEcCcHH-HHHHHHH-HHHHHHHcCCeEEEEEEEC
Confidence 5789999999976 7766544 4454234678899999964
No 28
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=63.10 E-value=37 Score=24.76 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHh--cCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK--FKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~--~~a~~vVl 130 (131)
++++++++++.++.+.+--|=.+. .+ ..+.+ .+||.+|.
T Consensus 176 ~lr~~~~~~~~~~~I~vdGGI~~~-~~-~~~~~~~aGad~~Vv 216 (237)
T 3cu2_A 176 QVEKRLGNRRVEKLINIDGSMTLE-LA-KYFKQGTHQIDWLVS 216 (237)
T ss_dssp HHHHHHGGGGGGCEEEEESSCCHH-HH-HHHHHSSSCCCCEEE
T ss_pred HHHHHHHhcCCCceEEEECCcCHH-HH-HHHHHhCCCCcEEEE
Confidence 456666666655555554454433 45 67788 89999985
No 29
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=61.83 E-value=48 Score=24.82 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=27.2
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCE-EEEEEEec
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDS-LKFLAVLH 46 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~-l~llhv~~ 46 (131)
..+|+|++=|-++ |.-.+.+ +.....+.|.. |..+|+.+
T Consensus 24 ~~~vlva~SGG~D-S~~Ll~l-l~~~~~~~g~~~v~av~vd~ 63 (317)
T 1wy5_A 24 ERRVLIAFSGGVD-SVVLTDV-LLKLKNYFSLKEVALAHFNH 63 (317)
T ss_dssp CCEEEEECCSSHH-HHHHHHH-HHHSTTTTTCSEEEEEEEEC
T ss_pred CCEEEEEecchHH-HHHHHHH-HHHHHHHcCCCEEEEEEEEC
Confidence 5789999999876 7766644 44441334666 99999853
No 30
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=59.89 E-value=7.4 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCcccceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEec
Q 036644 1 MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 1 ~~~~~~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~ 46 (131)
||.+ . +|.||+. ++.-.=|.=.+... ++.||.|+++.+-.
T Consensus 1 ms~~---~-~vVIDA~-g~vLGRLAS~VAk~-L~~Gd~VVVVNaek 40 (199)
T 4b6a_O 1 MSSQ---P-VVVIDAK-DHLLGRLASTIAKQ-LLNGQKIVVVRAEE 40 (199)
T ss_dssp -CCC---S-EEEEECT-TBBHHHHHHHHHHH-HHTTCEEEEECGGG
T ss_pred CCCC---C-EEEEECC-CCchHHHHHHHHHH-hcCCCEEEEEEchh
Confidence 5554 2 4689999 66655454444455 67899999998743
No 31
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=57.78 E-value=22 Score=28.11 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=28.1
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccC-CCCEEEEEEEec
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLK-HGDSLKFLAVLH 46 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~-~gD~l~llhv~~ 46 (131)
..+|+||+=|-.+ |.-.| +.+..+..+ .|-.+..+|+.+
T Consensus 13 ~~~vlVa~SGG~D-S~~Ll-~ll~~~~~~~~g~~v~avhvdh 52 (433)
T 1ni5_A 13 SRQILVAFSGGLD-STVLL-HQLVQWRTENPGVALRAIHVHH 52 (433)
T ss_dssp CSEEEEECCSBHH-HHHHH-HHHHHHHTTSTTCEEEEEEECC
T ss_pred CCEEEEEEcchHH-HHHHH-HHHHHHHHhcCCCeEEEEEEEC
Confidence 5789999999876 77555 445555223 678999999953
No 32
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=57.09 E-value=34 Score=27.88 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+-+++.|+.+ .|..|++.. + .+.+++.+|+.|+.|
T Consensus 97 L~dL~~~L~~lG~~L--~v~~G~p~~-v-~~L~~~~~a~~V~~d 136 (506)
T 3umv_A 97 LRRLAADAAARHLPF--FLFTGGPAE-I-PALVQRLGASTLVAD 136 (506)
T ss_dssp HHHHHHHHHHTTCCE--EEESSCTTH-H-HHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCce--EEEecChHH-H-HHHHHhcCCCEEEec
Confidence 445566677778765 456787644 6 899999999999875
No 33
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=53.84 E-value=39 Score=23.40 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vV 129 (131)
++++...|++.|+++++.|..-++.-+.+.+.+++...+.+|
T Consensus 15 ~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViI 56 (157)
T 2ywx_A 15 AEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFI 56 (157)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEE
Confidence 446677888999999999998766666677888776666665
No 34
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=53.49 E-value=66 Score=25.63 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+-+++.|+.+. +..|+ +.+++.+.+++.+++.|+.+
T Consensus 94 L~~L~~~L~~~G~~L~--v~~g~-~~~~l~~l~~~~~~~~V~~~ 134 (482)
T 2xry_A 94 LQELEVSLSRKKIPSF--FLRGD-PGEKISRFVKDYNAGTLVTD 134 (482)
T ss_dssp HHHHHHHHHHTTCCEE--EEESC-HHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCcEE--EEeCC-HHHHHHHHHHHcCCCEEEEe
Confidence 4456666777887665 45685 56689999999999998864
No 35
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=53.47 E-value=61 Score=23.41 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
+++++++++|.++.+.+--|=.++ .+ ..+.+.+||.+|.
T Consensus 156 ~lr~~~~~~~~~~~I~VdGGI~~~-~~-~~~~~aGAd~~V~ 194 (231)
T 3ctl_A 156 ELKAWREREGLEYEIEVDGSCNQA-TY-EKLMAAGADVFIV 194 (231)
T ss_dssp HHHHHHHHHTCCCEEEEESCCSTT-TH-HHHHHHTCCEEEE
T ss_pred HHHHHHhccCCCceEEEECCcCHH-HH-HHHHHcCCCEEEE
Confidence 446666666666665555565544 45 6777889999985
No 36
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=52.52 E-value=18 Score=25.29 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=25.0
Q ss_pred ceEEEEEEeCCcccChhH-------HhhHhhhc--------ccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSA-------IGGILKNL--------SLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~A-------l~WaL~nv--------~~~~gD~l~llhv~ 45 (131)
.+.+++++|.| + |+.+ |+++.+-+ ..+|+|++=|+..-
T Consensus 2 ~e~lvlvlD~S-~-SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa 54 (192)
T 2x5n_A 2 LEATMILIDNS-E-WMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIG 54 (192)
T ss_dssp CEEEEEEECCS-G-GGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred ceEEEEEEECC-H-hhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEc
Confidence 57899999999 3 5543 34433221 13799998888764
No 37
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=51.71 E-value=8.2 Score=25.14 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=25.0
Q ss_pred CCcccceEEEEEEeCCcccC-hhHHhhHhhhcccCCC--CEEEEEEE
Q 036644 1 MTEELCERVVVIQDASRDVN-SSAIGGILKNLSLKHG--DSLKFLAV 44 (131)
Q Consensus 1 ~~~~~~r~VvVavD~Ske~S-~~Al~WaL~nv~~~~g--D~l~llhv 44 (131)
||.+ .+-.+|..-+.++.. ..||.+|.+ . .+.| |.|.|+--
T Consensus 4 ~~~~-~K~~ivi~s~d~~~~~~~al~~A~~-a-~~~G~~~eV~i~~~ 47 (117)
T 2fb6_A 4 MSAN-DKLTILWTTDNKDTVFNMLAMYALN-S-KNRGWWKHINIILW 47 (117)
T ss_dssp SSTT-SEEEEEECCCCHHHHHHTHHHHHHH-H-HHHTSCSEEEEEEC
T ss_pred cccC-CeEEEEEEcCChHHHHHHHHHHHHH-H-HHcCCCCcEEEEEE
Confidence 5666 334444454444444 459999995 4 4666 88777653
No 38
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=49.73 E-value=24 Score=24.00 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCeEEEEEE----------ecCCchhHHHHHHHhcCCCEE
Q 036644 87 EIEQISKLCQAENIEFEIEVR----------PGVSLKTVAVRVAKKFKATWI 128 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~----------~G~~~~~~I~~~a~~~~a~~v 128 (131)
+|.++++.|++.+|.+++.=. .+......+++.|++++|.++
T Consensus 59 ~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a~lv 110 (142)
T 3i8o_A 59 ELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNSILL 110 (142)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCCEEE
Confidence 577888888888888874310 112446679999999998765
No 39
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=47.34 E-value=34 Score=23.84 Aligned_cols=40 Identities=5% Similarity=-0.109 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc--CCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF--KATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~--~a~~vVl 130 (131)
.+...+++.|+.+......+|++. .|.++.++. ++|+||.
T Consensus 27 ~l~~~L~~~G~~v~~~~iv~Dd~~-~I~~~l~~a~~~~DlVit 68 (172)
T 3kbq_A 27 FIGNFLTYHGYQVRRGFVVMDDLD-EIGWAFRVALEVSDLVVS 68 (172)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHH-HHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHH-HHHHHHHHHHhcCCEEEE
Confidence 456778889999887777788765 465655443 4888874
No 40
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=47.31 E-value=41 Score=22.92 Aligned_cols=39 Identities=3% Similarity=-0.121 Sum_probs=26.5
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc----CCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF----KATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~----~a~~vVl 130 (131)
+...+++.|+.+......+|++. .|.++.++. ++|+||.
T Consensus 36 l~~~L~~~G~~v~~~~iv~Dd~~-~i~~~l~~~~~~~~~DlVit 78 (169)
T 1y5e_A 36 LHELLKEAGHKVTSYEIVKDDKE-SIQQAVLAGYHKEDVDVVLT 78 (169)
T ss_dssp HHHHHHHHTCEEEEEEEECSSHH-HHHHHHHHHHTCTTCSEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEE
Confidence 35556677888877777777765 455555543 7899875
No 41
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=46.95 E-value=36 Score=24.51 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCC-c---hhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVS-L---KTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~-~---~~~I~~~a~~~~a~~vVl 130 (131)
...++|++.||.+...-....+ + ...+++..+++++|+||+
T Consensus 43 ~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~ 87 (211)
T 3p9x_A 43 KVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVL 87 (211)
T ss_dssp HHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEE
Confidence 4577888889887532111111 1 235778899999999986
No 42
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=44.55 E-value=72 Score=22.26 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHh---cCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK---FKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~---~~a~~vV 129 (131)
++++...|++.||.+++.|..-.+.-+.+.+.+++ .+++.+|
T Consensus 21 ~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViI 65 (166)
T 3oow_A 21 MKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVII 65 (166)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEE
Confidence 33557788899999999999876644445566554 4566665
No 43
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=44.24 E-value=40 Score=22.84 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc----CCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF----KATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~----~a~~vVl 130 (131)
.+...+++.|+.+......+|++. .|.++.++. ++|+||+
T Consensus 25 ~l~~~l~~~G~~v~~~~iv~Dd~~-~i~~~l~~~~~~~~~DlVit 68 (164)
T 2is8_A 25 AIREVLAGGPFEVAAYELVPDEPP-MIKKVLRLWADREGLDLILT 68 (164)
T ss_dssp HHHHHHTTSSEEEEEEEEECSCHH-HHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHCCCeEeEEEEcCCCHH-HHHHHHHHHHhcCCCCEEEE
Confidence 345667778888876666777765 455555543 7899885
No 44
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=43.66 E-value=68 Score=22.57 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHH---HHHHHhcCCCEEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVA---VRVAKKFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I---~~~a~~~~a~~vV 129 (131)
++...+++.||.+++.|..-++.-+.+ .+.+++.+++.||
T Consensus 30 ~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViI 72 (173)
T 4grd_A 30 HAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAII 72 (173)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEE
T ss_pred HHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEE
Confidence 456677889999999998876643333 3445556677665
No 45
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=43.41 E-value=68 Score=22.56 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCchhHHHHHHH---hcCCCEEE
Q 036644 89 EQISKLCQAENIEFEIEVRPGVSLKTVAVRVAK---KFKATWII 129 (131)
Q Consensus 89 ~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~---~~~a~~vV 129 (131)
+++...|++.||.+++.|..-.+.-+.+.+.++ +.+++.+|
T Consensus 29 ~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViI 72 (174)
T 3kuu_A 29 QFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVII 72 (174)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEE
Confidence 355678889999999999986665445555554 45667555
No 46
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=43.00 E-value=72 Score=22.35 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHh---cCCCEEE
Q 036644 89 EQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK---FKATWII 129 (131)
Q Consensus 89 ~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~---~~a~~vV 129 (131)
+++...|++.||++++.|..-.+.-+.+.+.+++ .+++.+|
T Consensus 28 ~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViI 71 (170)
T 1xmp_A 28 KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 71 (170)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEE
Confidence 3556677889999999998765554455565554 4567655
No 47
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=42.99 E-value=71 Score=22.63 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHH---HhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVA---KKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a---~~~~a~~vV 129 (131)
++++.+.+++.||++++.|..-.+.-+.+.+.+ ++.+...+|
T Consensus 38 ~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViI 82 (181)
T 4b4k_A 38 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 82 (181)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEE
Confidence 335567788899999999998766444444444 445666665
No 48
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=41.80 E-value=75 Score=22.50 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHh---cCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK---FKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~---~~a~~vV 129 (131)
++++...|++.||.+++.|..-++.-+.+.+.+++ .+++.||
T Consensus 37 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViI 81 (182)
T 1u11_A 37 MRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVII 81 (182)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEE
Confidence 44567788899999999998766555555566554 4467655
No 49
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=41.80 E-value=52 Score=21.71 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=24.7
Q ss_pred cceEEEEEEeCCcccCh--------hHHhhHhhhcccCCCCEEEEEEE
Q 036644 5 LCERVVVIQDASRDVNS--------SAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 5 ~~r~VvVavD~Ske~S~--------~Al~WaL~nv~~~~gD~l~llhv 44 (131)
.+..|++.+|.|. |. .++.-.++.+ ..++|.+-++.-
T Consensus 6 ~~~div~vlD~Sg--SM~~~~~~~~~~~~~~~~~~-~~~~~~v~lv~f 50 (185)
T 3n2n_F 6 GGFDLYFILDKSG--SVLHHWNEIYYFVEQLAHKF-ISPQLRMSFIVF 50 (185)
T ss_dssp SEEEEEEEEECSG--GGGGGHHHHHHHHHHHHHHC-CCTTEEEEEEEE
T ss_pred CCeeEEEEEeCCC--ChhhhHHHHHHHHHHHHHHh-CCCCcEEEEEEE
Confidence 3677999999993 44 2233334455 678888888775
No 50
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=41.66 E-value=50 Score=21.74 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=24.9
Q ss_pred ceEEEEEEeCCcccCh------hHHhhHhhhcccCCCCEEEEEEE
Q 036644 6 CERVVVIQDASRDVNS------SAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~------~Al~WaL~nv~~~~gD~l~llhv 44 (131)
+..|++.+|.|...+. .+..-++..+ ..++|.+-++..
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~-~~~~~~v~lv~f 49 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIEIYNFVQQLAERF-VSPEMRLSFIVF 49 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC-CCTTEEEEEEEE
T ss_pred ceeEEEEEECCCCcccCHHHHHHHHHHHHHHh-cCCCceEEEEEe
Confidence 6789999999943222 2233344555 568888888775
No 51
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=41.55 E-value=72 Score=21.60 Aligned_cols=39 Identities=10% Similarity=-0.148 Sum_probs=27.9
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHH----hcCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAK----KFKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~----~~~a~~vVl 130 (131)
+.+..++.|+++.-....+|++. .|.++.. ..++|+||.
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd~~-~i~~al~~~~a~~~~DlVit 87 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDDKI-KILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHH-HHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHCCCEEEEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEe
Confidence 46677788999988888888765 4555544 356898874
No 52
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=41.43 E-value=65 Score=22.00 Aligned_cols=39 Identities=3% Similarity=-0.055 Sum_probs=26.3
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhc----CCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKF----KATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~----~a~~vVl 130 (131)
+...+++.|+.+......+|++. .|.++.++. ++|+||+
T Consensus 33 l~~~L~~~G~~v~~~~iv~Dd~~-~i~~~l~~a~~~~~~DlVit 75 (172)
T 1mkz_A 33 LRDSAQEAGHHVVDKAIVKENRY-AIRAQVSAWIASDDVQVVLI 75 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHH-HHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEe
Confidence 45566678988877777777765 455555442 5899885
No 53
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=40.99 E-value=14 Score=22.01 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=24.6
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
++.|.|++++. =..+ + +|+-.- +++||.|-|++.+
T Consensus 28 ~~~vAV~vNg~-iVpr-~-~~~~~~--L~dGD~veIv~~V 62 (73)
T 2kl0_A 28 GGHFAVALNYD-VVPR-G-KWDETP--VTAGDEIEILTPR 62 (73)
T ss_dssp SSSCEEEESSS-EECH-H-HHTTCB--CCTTCEEEEECCC
T ss_pred CCcEEEEECCE-ECCh-H-HcCccc--CCCCCEEEEEccc
Confidence 46788999996 2233 2 575433 5899999999875
No 54
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=40.72 E-value=97 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+-+++.|+.+. +..|+ +.+++.+.+++.+++.|+.+
T Consensus 102 L~~L~~~L~~~G~~L~--v~~g~-~~~~l~~l~~~~~~~~V~~~ 142 (525)
T 2j4d_A 102 LVDLRKNLMKRGLNLL--IRSGK-PEEILPSLAKDFGARTVFAH 142 (525)
T ss_dssp HHHHHHHHHHTTCCCE--EEESC-HHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCeEE--EEeCC-HHHHHHHHHHHcCCCEEEEe
Confidence 4455666677787654 45685 56689999999999998863
No 55
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=39.73 E-value=64 Score=22.34 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHh---c-CCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK---F-KATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~---~-~a~~vV 129 (131)
++++...+++.||.+++.|..-.+.-+.+.+.+++ . +++.+|
T Consensus 18 ~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViI 63 (159)
T 3rg8_A 18 AEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYI 63 (159)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEE
Confidence 44567788899999999998766654455555543 2 466655
No 56
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=38.71 E-value=37 Score=22.72 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=25.5
Q ss_pred ceEEEEEEeCCcccC-------hhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVN-------SSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S-------~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
++.|++.+|.|...+ +.++...++.+ ..++|.+-|+..-
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~-~~~~~~v~lv~f~ 50 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRA-YAARDHVSLITFR 50 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHS-CTTTSCCCEEEES
T ss_pred CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHh-cCCCcEEEEEEEC
Confidence 678999999994321 33444444444 4788988777753
No 57
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=38.36 E-value=60 Score=22.75 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHH---HHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRV---AKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~---a~~~~a~~vV 129 (131)
++++...|++.||.+++.|..-.+.-+.+.+. +++.+++.+|
T Consensus 22 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViI 66 (169)
T 3trh_A 22 METAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFI 66 (169)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEE
Confidence 33557788889999999988766544444444 4445666554
No 58
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=37.97 E-value=18 Score=27.61 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=13.8
Q ss_pred EEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 103 EIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 103 ~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
....++|++|+ +.+.+-..++|+||||
T Consensus 47 s~L~vP~~~p~--~~eka~~~gaD~vilD 73 (316)
T 3qll_A 47 SWLFTPATRSD--RFAKAAENGADVAIID 73 (316)
T ss_dssp EEEEEESCC------------CCSEEEEE
T ss_pred EEEECCCCCHH--HHHHHhhCCCCEEEEe
Confidence 44666788766 4577888999999998
No 59
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=37.71 E-value=50 Score=25.29 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
...-.+.|++-|+..+..-...+-.++-+.+.++++|.|
T Consensus 71 v~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D 109 (303)
T 4b4u_A 71 VRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNAN 109 (303)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCC
Confidence 445678899999999888887766777788999998876
No 60
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=36.72 E-value=47 Score=25.29 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++|+++||.+- ...+-....+++..+++++|++|+
T Consensus 54 ~v~~~A~~~gIpv~---~~~~~~~~~~~~~l~~~~~Dliv~ 91 (318)
T 3q0i_A 54 PVKTLALEHNVPVY---QPENFKSDESKQQLAALNADLMVV 91 (318)
T ss_dssp HHHHHHHHTTCCEE---CCSCSCSHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCEE---ccCcCCCHHHHHHHHhcCCCEEEE
Confidence 34678888999862 232222335779999999999985
No 61
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=36.47 E-value=19 Score=22.31 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=23.4
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.|.|++++. -..+ -+|.-.- +++||.|-|+..+
T Consensus 50 ~~~vaVavNg~-iV~~--~~~~~~~--L~dGD~Vei~~~V 84 (87)
T 1tyg_B 50 NKIVIVERNKE-IIGK--ERYHEVE--LCDRDVIEIVHFV 84 (87)
T ss_dssp TSCCEEEETTE-EECG--GGTTTSB--CCSSSEEEEEEEC
T ss_pred CCCEEEEECCE-ECCh--hhcCCcC--CCCCCEEEEEccc
Confidence 45678899886 2222 2575433 5899999998764
No 62
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=36.04 E-value=66 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+-+++.|+.+- +..|+ +.+++.+.+++.+++.|+.|
T Consensus 54 L~~l~~~L~~~g~~l~--~~~g~-~~~~l~~l~~~~~~~~v~~~ 94 (420)
T 2j07_A 54 VRALREAYRARGGALW--VLEGL-PWEKVPEAARRLKAKAVYAL 94 (420)
T ss_dssp HHHHHHHHHHTTCCEE--EEESC-HHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHCCCeEE--EEeCC-HHHHHHHHHHHcCCCEEEEe
Confidence 4456667777887664 45685 56689999999999999863
No 63
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=35.99 E-value=83 Score=23.58 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|..+-+.+++.||.+-++|-+ ...-+++|++.+|++|=|
T Consensus 113 L~~~i~~L~~~GIrVSLFIDp----d~~qi~aA~~~GAd~IEL 151 (260)
T 3o6c_A 113 LKQSIEKLQNANIEVSLFINP----SLEDIEKSKILKAQFIEL 151 (260)
T ss_dssp HHHHHHHHHHTTCEEEEEECS----CHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCC----CHHHHHHHHHhCCCEEEE
Confidence 445566677889999888743 223459999999999854
No 64
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=35.83 E-value=1.1e+02 Score=21.26 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHH---hcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAK---KFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~---~~~a~~vV 129 (131)
++++...|++.||.+++.|..-++.-+.+.+.++ +.+++.+|
T Consensus 19 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViI 63 (163)
T 3ors_A 19 MQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIII 63 (163)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEE
Confidence 4456778889999999999876655445545544 45566554
No 65
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=35.77 E-value=86 Score=21.90 Aligned_cols=40 Identities=5% Similarity=-0.076 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHh---cCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK---FKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~---~~a~~vVl 130 (131)
.+...+++.|..+......+|++. .|.++.++ .++|+||.
T Consensus 53 ~L~~~L~~~G~~v~~~~iv~Dd~~-~I~~al~~a~~~~~DlVIt 95 (185)
T 3rfq_A 53 LVTELLTEAGFVVDGVVAVEADEV-DIRNALNTAVIGGVDLVVS 95 (185)
T ss_dssp HHHHHHHHTTEEEEEEEEECSCHH-HHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHH-HHHHHHHHHHhCCCCEEEE
Confidence 456777888988877777777765 56566554 47899885
No 66
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=35.54 E-value=54 Score=24.86 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++|+++||.+- ...+-..+.+.+..+++++|++|+
T Consensus 50 ~v~~~A~~~gIpv~---~~~~~~~~~~~~~l~~~~~Dliv~ 87 (314)
T 1fmt_A 50 PVKVLAEEKGLPVF---QPVSLRPQENQQLVAELQADVMVV 87 (314)
T ss_dssp HHHHHHHHTTCCEE---CCSCSCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCcEE---ecCCCCCHHHHHHHHhcCCCEEEE
Confidence 44678888999872 332222345779999999999985
No 67
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=35.52 E-value=75 Score=24.19 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhH---HHHHHHhcCCCEEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTV---AVRVAKKFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~---I~~~a~~~~a~~vV 129 (131)
++.+..++.++.+.+.+..|.++.+. +++.+++.++|.||
T Consensus 49 ~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~II 91 (370)
T 1jq5_A 49 TIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVI 91 (370)
T ss_dssp HHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 55566666788776555667766633 44556677888886
No 68
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=35.39 E-value=78 Score=21.36 Aligned_cols=31 Identities=6% Similarity=0.043 Sum_probs=21.2
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc----CCCEEEe
Q 036644 99 NIEFEIEVRPGVSLKTVAVRVAKKF----KATWIIL 130 (131)
Q Consensus 99 ~V~~~~~v~~G~~~~~~I~~~a~~~----~a~~vVl 130 (131)
|+++......+|++. .|.++.++. ++|+||.
T Consensus 43 G~~v~~~~iv~Dd~~-~i~~~l~~~~~~~~~DlVit 77 (167)
T 1uuy_A 43 GAKVVATAVVPDEVE-RIKDILQKWSDVDEMDLILT 77 (167)
T ss_dssp SEEEEEEEEECSCHH-HHHHHHHHHHHTSCCSEEEE
T ss_pred CcEEeEEEEcCCCHH-HHHHHHHHHHhcCCCCEEEE
Confidence 777776666677755 465666553 7999885
No 69
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=35.23 E-value=24 Score=26.83 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=19.4
Q ss_pred EEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 106 VRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 106 v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
+.++.++...+..++++.++|+||||
T Consensus 113 v~v~~~R~~~~~~~~~~~~~dviIlD 138 (315)
T 4ehx_A 113 VVASEDRYKGGLLALEKLSPEVFILD 138 (315)
T ss_dssp EEEESSHHHHHHHHHHHHCCSEEEEE
T ss_pred EEEecchHHHHHHHhhccCCcEEEec
Confidence 34455555567677888999999998
No 70
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=35.20 E-value=19 Score=23.25 Aligned_cols=40 Identities=8% Similarity=0.044 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+++.|++.|+++++...-....+..+ ...+=-+||.||+
T Consensus 24 aLekaA~~~G~~ikVEtqgs~g~~n~L-t~~~I~~AD~VIi 63 (106)
T 2m1z_A 24 ALKKGAKKMGNLIKVETQGATGIENEL-TEKDVNIGEVVIF 63 (106)
T ss_dssp HHHHHHHHHTCEEEEEEEETTEESSCC-CHHHHHHCSEEEE
T ss_pred HHHHHHHHCCCEEEEEEecCccccCCC-CHHHHhhCCEEEE
Confidence 567788899998887777532222112 1111126777765
No 71
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=35.08 E-value=52 Score=22.30 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=21.9
Q ss_pred HHhcCCeEEEEEEecCCchhHHHHHHHhc---CCCEEEe
Q 036644 95 CQAENIEFEIEVRPGVSLKTVAVRVAKKF---KATWIIL 130 (131)
Q Consensus 95 c~~~~V~~~~~v~~G~~~~~~I~~~a~~~---~a~~vVl 130 (131)
+++.|+.+......+|++. .|.++.++. ++|+||.
T Consensus 38 l~~~G~~v~~~~iv~Dd~~-~I~~~l~~a~~~~~DlVit 75 (167)
T 2g2c_A 38 LQDYSYELISEVVVPEGYD-TVVEAIATALKQGARFIIT 75 (167)
T ss_dssp ---CEEEEEEEEEECSSHH-HHHHHHHHHHHTTCSEEEE
T ss_pred HHHCCCEEeEEEEeCCCHH-HHHHHHHHHHhCCCCEEEE
Confidence 6677887776666777765 465666553 5899875
No 72
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=34.95 E-value=61 Score=26.09 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|..+.+-+++.|+.+. +..|+++.++|.+.+++.+++.|+.
T Consensus 67 L~~L~~~L~~~G~~L~--v~~~g~~~~~l~~l~~~~~~~~V~~ 107 (509)
T 1u3d_A 67 LAQLDSSLRSLGTCLI--TKRSTDSVASLLDVVKSTGASQIFF 107 (509)
T ss_dssp HHHHHHHHHHTTCCEE--EEECSCHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCeEE--EEeCCCHHHHHHHHHHHcCCCEEEE
Confidence 4456666777887754 3443356678999999999999875
No 73
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=34.62 E-value=99 Score=21.72 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHH---HHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAV---RVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~---~~a~~~~a~~vV 129 (131)
++++...|++.||.+++.|..-.+.-+.+. +.+++.+++.+|
T Consensus 23 ~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViI 67 (174)
T 3lp6_A 23 MADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVII 67 (174)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 335567788899999999887655433343 445556777655
No 74
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=34.18 E-value=48 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=24.0
Q ss_pred HHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 92 SKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 92 ~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
++.-++.+..+-+.+..-..|. .++.+...++|+||+|
T Consensus 7 k~~l~~g~~~~g~~~~~~~~p~--~~e~a~~~g~D~vilD 44 (261)
T 3qz6_A 7 KKKLSAGKSVVGTMLNLVYNPD--IVRIYAEAGLDYFIVD 44 (261)
T ss_dssp HHHHHTTCCEEEEEESSCCCTT--HHHHHHHTTCSEEEEE
T ss_pred HHHHHCCCCEEEEEEecCCCHH--HHHHHhcCCcCEEEEe
Confidence 4444444454444443303445 5699999999999998
No 75
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=34.17 E-value=40 Score=24.10 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCcccceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEE
Q 036644 1 MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 1 ~~~~~~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv 44 (131)
|... ..++.||.|.+ + -.+|++++-. + |+.+..+++
T Consensus 1 ~~~~-~~~livAlD~~-~-~~~a~~~~~~-~----~~~~~~ikv 36 (221)
T 3exr_A 1 MTKQ-LPNLQVALDHS-N-LKGAITAAVS-V----GNEVDVIEA 36 (221)
T ss_dssp --CC-CCEEEEEECCS-S-HHHHHHHHHH-H----GGGCSEEEE
T ss_pred CCCC-CCCEEEEeCCC-C-HHHHHHHHHh-h----CCCceEEEE
Confidence 3444 55789999998 4 6788888753 3 344556666
No 76
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=34.12 E-value=1e+02 Score=23.11 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCeEEEEEEe-cCCch------h---HHHHHHHhcCCCEE
Q 036644 87 EIEQISKLCQAENIEFEIEVRP-GVSLK------T---VAVRVAKKFKATWI 128 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~-G~~~~------~---~I~~~a~~~~a~~v 128 (131)
.+.++.+.|++.|+.+-+.++. |...+ + ..++++.+++||||
T Consensus 143 ~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~i 194 (304)
T 1to3_A 143 MVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLY 194 (304)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEE
T ss_pred HHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEE
Confidence 3678899999999999888874 32211 1 13467778999987
No 77
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=34.01 E-value=23 Score=20.56 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=19.7
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEE
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv 44 (131)
.+.++|++++. -.++. .. +++||.|-++..
T Consensus 37 ~~~v~vavN~~-~v~~~-------~~-L~~gD~V~ii~~ 66 (70)
T 1ryj_A 37 IETVVVKKNGQ-IVIDE-------EE-IFDGDIIEVIRV 66 (70)
T ss_dssp TTTEEEEETTE-ECCTT-------SB-CCTTCEEEEEEC
T ss_pred CCCEEEEECCE-ECCCc-------cc-CCCCCEEEEEec
Confidence 34567888886 22222 14 789999988875
No 78
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=33.39 E-value=58 Score=24.08 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCch--hHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLK--TVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~--~~I~~~a~~~~a~~vVl 130 (131)
|..+.+.+++++|++-+ +....+++ +.|.+.|++.++..++|
T Consensus 201 l~~l~~~ik~~~v~~if-~e~~~~~~~~~~l~~~a~~~g~~v~~l 244 (282)
T 3mfq_A 201 MIETVNLIIDHNIKAIF-TESTTNPERMKKLQEAVKAKGGQVEVV 244 (282)
T ss_dssp HHHHHHHHHHHTCCEEE-CBTTSCTHHHHHHHHHHHTTSCCCEEE
T ss_pred HHHHHHHHHHcCCCEEE-EeCCCChHHHHHHHHHHHhcCCceEEe
Confidence 44567777788887764 34444443 45666788888887775
No 79
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=33.22 E-value=83 Score=23.82 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|..+-+.+++.||.+-++|-+ ...-+++|.+.+|++|=|
T Consensus 144 L~~~i~~L~~~GIrVSLFIDp----d~~qI~aA~~~GAd~IEL 182 (278)
T 3gk0_A 144 VRAACKQLADAGVRVSLFIDP----DEAQIRAAHETGAPVIEL 182 (278)
T ss_dssp HHHHHHHHHHTTCEEEEEECS----CHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCC----CHHHHHHHHHhCcCEEEE
Confidence 334455667789999888833 223459999999999854
No 80
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=32.78 E-value=66 Score=24.49 Aligned_cols=37 Identities=11% Similarity=-0.102 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
.-.+.|++-|+..+..-...+-.++-+.+.++++|+|
T Consensus 57 ~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 93 (300)
T 4a26_A 57 LKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNND 93 (300)
T ss_dssp HHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4477899999999988887666667788999999887
No 81
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=32.28 E-value=69 Score=24.23 Aligned_cols=37 Identities=8% Similarity=0.085 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
.-.+.|++-|+..+..-...+-.++-+.+.++++|.|
T Consensus 55 ~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 91 (286)
T 4a5o_A 55 HKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDD 91 (286)
T ss_dssp HHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999988887665666788999999887
No 82
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=32.06 E-value=1.1e+02 Score=20.93 Aligned_cols=40 Identities=10% Similarity=-0.139 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHh----cCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK----FKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~----~~a~~vVl 130 (131)
.+...+++.|..+......+|++. .|.++.++ .++|+||+
T Consensus 44 ~L~~~l~~~G~~v~~~~iv~Dd~~-~I~~al~~a~~~~~~DlVit 87 (178)
T 2pjk_A 44 IIKQLLIENGHKIIGYSLVPDDKI-KILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHH-HHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEE
Confidence 456777888998877666777765 45555443 24899885
No 83
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=31.23 E-value=1e+02 Score=21.48 Aligned_cols=39 Identities=8% Similarity=-0.028 Sum_probs=25.2
Q ss_pred HHHHHHh---cCCeEEEEEEecCCchhHHHHHHHhc----CCCEEEe
Q 036644 91 ISKLCQA---ENIEFEIEVRPGVSLKTVAVRVAKKF----KATWIIL 130 (131)
Q Consensus 91 ~~~~c~~---~~V~~~~~v~~G~~~~~~I~~~a~~~----~a~~vVl 130 (131)
+...+++ .|+.+......+|++. .|.++.++. ++|+||+
T Consensus 39 L~~~L~~~~~~G~~v~~~~iv~Dd~~-~I~~al~~a~~~~~~DlVIt 84 (189)
T 1jlj_A 39 LKDLVQDPSLLGGTISAYKIVPDEIE-EIKETLIDWCDEKELNLILT 84 (189)
T ss_dssp HHHHHHCTTTTCCEEEEEEEECSCHH-HHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHhchhcCCcEEEEEEEeCCCHH-HHHHHHHHHhhcCCCCEEEE
Confidence 3445555 6888777667777765 455555443 7999985
No 84
>4ewi_A Nacht, LRR and PYD domains-containing protein 4; NLR proteins, death domain, pyrin domain, NLRP4, ASC, innate system, inflammasome, apoptosis; 2.28A {Homo sapiens}
Probab=31.18 E-value=15 Score=23.98 Aligned_cols=18 Identities=22% Similarity=0.052 Sum_probs=12.2
Q ss_pred EeCCcccChhHHhhHhhhc
Q 036644 13 QDASRDVNSSAIGGILKNL 31 (131)
Q Consensus 13 vD~Ske~S~~Al~WaL~nv 31 (131)
+.+| ..|...|.|||+++
T Consensus 3 ma~s-~~~~~~Ll~yLe~L 20 (113)
T 4ewi_A 3 MAAS-FFSDFGLMWYLEEL 20 (113)
T ss_dssp -----CTTCCHHHHHHTTS
T ss_pred cccc-cCCCccHHHHHHHc
Confidence 4456 46788999999999
No 85
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=30.97 E-value=68 Score=24.22 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
.-.+.|++-|+..+..-...+-.++-+.+.++++|+|
T Consensus 54 ~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 90 (285)
T 3l07_A 54 SKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 90 (285)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4477899999999988887666666788999999887
No 86
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=30.42 E-value=97 Score=21.20 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=20.9
Q ss_pred hcCCeEEEEEEecCCchhHHHHHHHhc----CCCEEEe
Q 036644 97 AENIEFEIEVRPGVSLKTVAVRVAKKF----KATWIIL 130 (131)
Q Consensus 97 ~~~V~~~~~v~~G~~~~~~I~~~a~~~----~a~~vVl 130 (131)
+.|+.+. ....+|++. .|.++.++. ++|+||+
T Consensus 39 ~~G~~v~-~~iv~Dd~~-~I~~~l~~~~~~~~~DlVit 74 (178)
T 2pbq_A 39 ITPFEVE-YRVIPDERD-LIEKTLIELADEKGCSLILT 74 (178)
T ss_dssp CSCCEEE-EEEECSCHH-HHHHHHHHHHHTSCCSEEEE
T ss_pred hCCCEEE-EEEcCCCHH-HHHHHHHHHHhcCCCCEEEE
Confidence 6788884 445666655 455555543 7899885
No 87
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=30.37 E-value=90 Score=18.66 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=11.2
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
..+..++.+.|+|++|
T Consensus 39 a~~~l~~~~~dlii~D 54 (127)
T 3i42_A 39 ALHAMSTRGYDAVFID 54 (127)
T ss_dssp HHHHHHHSCCSEEEEE
T ss_pred HHHHHHhcCCCEEEEe
Confidence 4467777777777776
No 88
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=30.28 E-value=26 Score=25.78 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=21.5
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecC
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQ 47 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~ 47 (131)
+|+|-|.+++ .|-+- ++|||.|.+.+++..
T Consensus 210 Prsi~v~l~~-----------dLvd~-~~PGDrV~vtGI~~~ 239 (268)
T 2vl6_A 210 PRQLEIILED-----------DLVDS-ARPGDRVKVTGILDI 239 (268)
T ss_dssp CCEEEEEEEG-----------GGTTS-SCTTCEEEEEEEEEE
T ss_pred CcEEEEEEcc-----------CccCc-ccCCCEEEEEEEEEE
Confidence 4666666644 23455 799999999999864
No 89
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=29.96 E-value=96 Score=22.10 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=25.6
Q ss_pred HHHHHhcCCeEEEEEEecCC-c---hhHHHHHHHhcCCCEEEe
Q 036644 92 SKLCQAENIEFEIEVRPGVS-L---KTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 92 ~~~c~~~~V~~~~~v~~G~~-~---~~~I~~~a~~~~a~~vVl 130 (131)
.++|++.||.+...-....+ + .+.+++..+++++|++|+
T Consensus 50 l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~ 92 (209)
T 4ds3_A 50 LAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICL 92 (209)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 46788889887632111111 1 246778999999999986
No 90
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=29.70 E-value=1.5e+02 Score=20.97 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHH---hcCCCEEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAK---KFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~---~~~a~~vV 129 (131)
++...|++.||.+++.|..-.+.-+.+.+.++ +.+++.||
T Consensus 31 ~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViI 73 (183)
T 1o4v_A 31 QAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73 (183)
T ss_dssp HHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEE
T ss_pred HHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEE
Confidence 55667788999999999875554334445544 45577655
No 91
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=29.11 E-value=92 Score=18.80 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=22.8
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEE
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFL 42 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~ll 42 (131)
-++++||+-+-.+...|..++... ++|+.+.|.
T Consensus 28 D~I~~Ing~~v~~~~dl~~~l~~~--~~g~~v~l~ 60 (100)
T 3i18_A 28 DLITEIDGNAFKSSQEFIDYIHSK--KVGDTVKIN 60 (100)
T ss_dssp CEEEEETTBCCSSHHHHHHHHHTS--CTTCEEEEE
T ss_pred CEEEEECCEECCCHHHHHHHHHhC--CCCCEEEEE
Confidence 367799997545677888888754 467765543
No 92
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=29.11 E-value=29 Score=22.57 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+++.|++.|+.+++...-....+..+ ...+=-.||.||+
T Consensus 27 aL~~aA~~~G~~ikVEtqGs~G~~n~L-t~~~I~~Ad~VIi 66 (111)
T 2kyr_A 27 ALEEAAVEAGYEVKIETQGADGIQNRL-TAQDIAEATIIIH 66 (111)
T ss_dssp HHHHHHHHTSSEEEEEEEETTEEESCC-CHHHHHHCSEEEE
T ss_pred HHHHHHHHCCCeEEEEecCCCCcCCCC-CHHHHHhCCEEEE
Confidence 457789999998887776533233211 1222234666654
No 93
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=28.80 E-value=64 Score=23.45 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=24.2
Q ss_pred HHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 92 SKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 92 ~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
++.-++.+..+...+..+ .|. .++.+...++|+|+||
T Consensus 11 k~~l~~g~~~~~~~l~v~-~p~--~~e~a~~~gaD~v~lD 47 (256)
T 1dxe_A 11 KAALAAKQVQIGCWSALS-NPI--STEVLGLAGFDWLVLD 47 (256)
T ss_dssp HHHHHTTCCEEEEEECSC-SHH--HHHHHTTSCCSEEEEE
T ss_pred HHHHHCCCCeEEEEEeCC-CHH--HHHHHHhCCCCEEEEc
Confidence 333334444555555554 334 5699999999999998
No 94
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=28.76 E-value=59 Score=24.55 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
.-.+.|++-|+..+..-...+-..+-+.+.++++|.|
T Consensus 52 ~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D 88 (281)
T 2c2x_A 52 GKHADCAKVGITSIRRDLPADISTATLNETIDELNAN 88 (281)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4477899999999988887666677788999888876
No 95
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=28.69 E-value=59 Score=24.82 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
.-.+.|++-|+..+..-...+-..+-+.+.++++|.|
T Consensus 55 ~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 91 (301)
T 1a4i_A 55 VKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNED 91 (301)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4477899999999988887666676788999998876
No 96
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=28.52 E-value=29 Score=25.79 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=21.7
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecC
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQ 47 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~ 47 (131)
+|.|-|.+++ .|-+- ++|||.|.+.+++..
T Consensus 197 Prsi~V~l~~-----------dLvd~-~~PGDrV~vtGI~~~ 226 (279)
T 1ltl_A 197 PRQITVVLED-----------DLVDT-LTPGDIVRVTGTLRT 226 (279)
T ss_dssp CCEEEEEEEG-----------GGTTC-CCTTCEEEEEEEEEE
T ss_pred CeEEEEEEcc-----------cccCc-cCCCCEEEEEEEEEE
Confidence 4666666644 23455 799999999999864
No 97
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=28.43 E-value=71 Score=23.83 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=24.7
Q ss_pred HHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 91 ISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
+++..+..+..+.+ ...+..|. .++.+...++|+|+||
T Consensus 30 ~k~~l~~G~~~~gl-~~~~~~p~--~~e~a~~~GaD~v~lD 67 (287)
T 2v5j_A 30 FKAALKAGRPQIGL-WLGLSSSY--SAELLAGAGFDWLLID 67 (287)
T ss_dssp HHHHHHTTCCEEEE-EECSCCHH--HHHHHHTSCCSEEEEE
T ss_pred HHHHHHCCCcEEEE-EEECCCHH--HHHHHHhCCCCEEEEe
Confidence 44444433334443 45555555 5599999999999998
No 98
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=28.07 E-value=62 Score=26.40 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=25.2
Q ss_pred CCccc-ceEEEEEEeCCcccChh--------HHhhHhhhc---c-----cCCCCEEEEEEEe
Q 036644 1 MTEEL-CERVVVIQDASRDVNSS--------AIGGILKNL---S-----LKHGDSLKFLAVL 45 (131)
Q Consensus 1 ~~~~~-~r~VvVavD~Ske~S~~--------Al~WaL~nv---~-----~~~gD~l~llhv~ 45 (131)
|+.++ +.-+|++||.|. |+. -|+||++-+ . .+++|.|=|+..-
T Consensus 1 ~~~~~~ke~iv~~iDvS~--SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~ 60 (565)
T 1jey_B 1 MVRSGNKAAVVLCMDVGF--TMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFG 60 (565)
T ss_dssp -----CCEEEEEEEECCG--GGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEES
T ss_pred CCCCCCceEEEEEEECCh--HhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEc
Confidence 55543 378999999993 432 355655433 1 3699987777654
No 99
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=28.07 E-value=1e+02 Score=18.43 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCCEEEeC
Q 036644 115 VAVRVAKKFKATWIILD 131 (131)
Q Consensus 115 ~I~~~a~~~~a~~vVlD 131 (131)
-..+..++.+.|+|++|
T Consensus 37 ~al~~~~~~~~dlii~D 53 (120)
T 3f6p_A 37 EAVEMVEELQPDLILLD 53 (120)
T ss_dssp HHHHHHHTTCCSEEEEE
T ss_pred HHHHHHhhCCCCEEEEe
Confidence 34578888889998887
No 100
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=27.93 E-value=19 Score=20.61 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=23.4
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.|.|++++. -.. -.+|.-. . +++||.|-|+..+
T Consensus 29 ~~~v~vavN~~-~v~--~~~~~~~-~-L~~gD~v~i~~~V 63 (66)
T 1f0z_A 29 QAGAALAINQQ-IVP--REQWAQH-I-VQDGDQILLFQVI 63 (66)
T ss_dssp CSSEEEEETTE-EEC--HHHHTTC-C-CCTTEEECEEESC
T ss_pred CCCEEEEECCE-ECC--chhcCCc-C-CCCCCEEEEEeec
Confidence 45688999886 322 2357433 3 5899999988753
No 101
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=27.77 E-value=99 Score=24.69 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|..+.+-+++.|+.+-+ ..|+ +.+++.+.+++.+++.|+.
T Consensus 59 L~~L~~~L~~~G~~L~v--~~g~-~~~~l~~l~~~~~~~~v~~ 98 (484)
T 1owl_A 59 LQELQQRYQQAGSRLLL--LQGD-PQHLIPQLAQQLQAEAVYW 98 (484)
T ss_dssp HHHHHHHHHHHTSCEEE--EESC-HHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHCCCeEEE--EeCC-HHHHHHHHHHHcCCCEEEE
Confidence 44556666677876654 4685 5668999999999999986
No 102
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=27.58 E-value=1.6e+02 Score=20.74 Aligned_cols=41 Identities=5% Similarity=-0.019 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.+.+.|+++|..+.+....+......+.+.....++|-||+
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi 71 (294)
T 3qk7_A 31 WIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIV 71 (294)
T ss_dssp HHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEE
T ss_pred HHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEE
Confidence 44555666665555433322122233445555556665554
No 103
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=27.57 E-value=1e+02 Score=19.23 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCeEEEEEEe
Q 036644 90 QISKLCQAENIEFEIEVRP 108 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~ 108 (131)
++++.++++|+++++.-..
T Consensus 22 k~~~~~~~~gi~~~i~a~~ 40 (106)
T 1e2b_A 22 KMRAQAEKYEVPVIIEAFP 40 (106)
T ss_dssp HHHHHHHHSCCSEEEEEEC
T ss_pred HHHHHHHHCCCCeEEEEec
Confidence 5577888999987754443
No 104
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=27.52 E-value=83 Score=23.80 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++++|+++||.+- ...+-....+++..+++++|++|+
T Consensus 49 ~v~~~A~~~gIpv~---~~~~~~~~~~~~~l~~~~~Dliv~ 86 (314)
T 3tqq_A 49 PVKEIARQNEIPII---QPFSLRDEVEQEKLIAMNADVMVV 86 (314)
T ss_dssp HHHHHHHHTTCCEE---CCSCSSSHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCEE---CcccCCCHHHHHHHHhcCCCEEEE
Confidence 45778888999852 232222335779999999999985
No 105
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=27.01 E-value=79 Score=23.16 Aligned_cols=37 Identities=8% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 92 SKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 92 ~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
++..+.....+.+.+..+ .|. .++.+...++|+|+||
T Consensus 10 k~~l~~g~~~~g~~~~~~-~p~--~~e~a~~~GaD~v~lD 46 (267)
T 2vws_A 10 KERLRKGEVQIGLWLSST-TAY--MAEIAATSGYDWLLID 46 (267)
T ss_dssp HHHHHTTCCEEEEEECSC-CHH--HHHHHHTTCCSEEEEE
T ss_pred HHHHHCCCCEEEEEEeCC-CHH--HHHHHHhCCCCEEEEc
Confidence 333333333445444443 333 5699999999999998
No 106
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.86 E-value=1.3e+02 Score=21.28 Aligned_cols=15 Identities=0% Similarity=0.147 Sum_probs=6.6
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
.++.+++ +.-+|++|
T Consensus 81 ~~~~~~~-~iPvV~i~ 95 (289)
T 3k9c_A 81 ELGALAD-RVPALVVA 95 (289)
T ss_dssp HHHHHHT-TSCEEEES
T ss_pred HHHHHHc-CCCEEEEc
Confidence 3344444 44444443
No 107
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.77 E-value=1.1e+02 Score=18.39 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCCEEEeC
Q 036644 115 VAVRVAKKFKATWIILD 131 (131)
Q Consensus 115 ~I~~~a~~~~a~~vVlD 131 (131)
-..+..++.+.|+|++|
T Consensus 37 ~al~~l~~~~~dlvllD 53 (122)
T 3gl9_A 37 IALEKLSEFTPDLIVLX 53 (122)
T ss_dssp HHHHHHTTBCCSEEEEC
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 34578888888998887
No 108
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=26.72 E-value=70 Score=17.27 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCcccceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 1 MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 1 ~~~~~~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
|.|...+.+..-.|.... .. +.++.+.||.|.++.-.
T Consensus 1 ~d~~~~~~~~al~dy~~~-~~-------~eLs~~~Gd~i~v~~~~ 37 (62)
T 3ngp_A 1 MDETGKELVLVLYDYQEK-SP-------RELTVKKGDILTLLNST 37 (62)
T ss_dssp -----CCEEEECSCBCCC-ST-------TBCCBCTTCEEEEEECC
T ss_pred CCCCCCEEEEECcCCCCC-CC-------CCccCCCCCEEEEeEec
Confidence 566655666666666522 22 34557899999988753
No 109
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=26.59 E-value=99 Score=22.83 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
++.+.+++++|.+- ++....+++ .+=..|++.++..++||
T Consensus 219 ~l~~~ik~~~v~~i-f~e~~~~~~-~~~~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 219 EIQDFVKEYNVKTI-FAEDNVNPK-IAHAIAKSTGAKVKTLS 258 (286)
T ss_dssp HHHHHHHHTTCCEE-EECTTSCTH-HHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHcCCCEE-EEeCCCChH-HHHHHHHHhCCeEEEec
Confidence 44445555555543 222333333 23233455555555543
No 110
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=26.50 E-value=1.1e+02 Score=18.55 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCCEEEeC
Q 036644 115 VAVRVAKKFKATWIILD 131 (131)
Q Consensus 115 ~I~~~a~~~~a~~vVlD 131 (131)
-..+..++.+.|+||+|
T Consensus 41 ~a~~~l~~~~~dlvi~d 57 (140)
T 3grc_A 41 QALEQVARRPYAAMTVD 57 (140)
T ss_dssp HHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHhCCCCEEEEe
Confidence 34578888888888887
No 111
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=26.23 E-value=1.3e+02 Score=21.32 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=25.9
Q ss_pred HHHHHHhcCCeEEEEEEec-CCc----hhHHHHHHHhcCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRPG-VSL----KTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~G-~~~----~~~I~~~a~~~~a~~vVl 130 (131)
..+.|++.||.+.. +... .+. .+.+.+..+++++|+||+
T Consensus 42 ~~~~A~~~gIp~~~-~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~ 85 (209)
T 1meo_A 42 GLDKAERAGIPTRV-INHKLYKNRVEFDSAIDLVLEEFSIDIVCL 85 (209)
T ss_dssp HHHHHHHTTCCEEE-CCGGGSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCCEEE-ECccccCchhhhhHHHHHHHHhcCCCEEEE
Confidence 35778999998753 2211 111 135778899999999986
No 112
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=26.08 E-value=32 Score=22.14 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|++.+++.|+.+++...-....+..+ ...+=-.||+||+
T Consensus 24 aL~~aA~~~G~~ikVEtqGs~G~~n~L-t~~~I~~Ad~VIi 63 (106)
T 2r48_A 24 NLQKAADRLGVSIKVETQGGIGVENKL-TEEEIREADAIII 63 (106)
T ss_dssp HHHHHHHHHTCEEEEEEEETTEEESCC-CHHHHHHCSEEEE
T ss_pred HHHHHHHHCCCeEEEEecCCCCccCCC-CHHHHHhCCEEEE
Confidence 456778888988887777533333222 2223345666664
No 113
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=26.05 E-value=1.2e+02 Score=22.13 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCc---hhHHHHHHHhcCCCEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSL---KTVAVRVAKKFKATWI 128 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~---~~~I~~~a~~~~a~~v 128 (131)
+..+.+.|...|+.+++.+..+--. -...|+.+.+.+||+|
T Consensus 122 i~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ria~eaGADfV 165 (234)
T 1n7k_A 122 VSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIV 165 (234)
T ss_dssp HHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHHHHHhCCCEE
Confidence 5567788888788887666654322 2347888999999987
No 114
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=26.02 E-value=1.1e+02 Score=19.21 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=11.7
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
..+..++.+.|+||+|
T Consensus 43 al~~l~~~~~dlii~D 58 (154)
T 3gt7_A 43 AVRFLSLTRPDLIISD 58 (154)
T ss_dssp HHHHHTTCCCSEEEEE
T ss_pred HHHHHHhCCCCEEEEe
Confidence 4477777778888776
No 115
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=25.89 E-value=64 Score=23.65 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCeEEEEEEe-cC------CchhH--HHHHHHhcCCCEEE
Q 036644 88 IEQISKLCQAENIEFEIEVRP-GV------SLKTV--AVRVAKKFKATWII 129 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~-G~------~~~~~--I~~~a~~~~a~~vV 129 (131)
+.++.+.|.++++.+-+..+. |. .+... .|+.+.+.+||+|-
T Consensus 127 ~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vk 177 (263)
T 1w8s_A 127 LARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMK 177 (263)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 567788899899887544433 10 22322 37889999999985
No 116
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=25.70 E-value=27 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=14.9
Q ss_pred eEEEEEEeCCcc----cChhHHhhH
Q 036644 7 ERVVVIQDASRD----VNSSAIGGI 27 (131)
Q Consensus 7 r~VvVavD~Ske----~S~~Al~Wa 27 (131)
++|++=+|||.+ |=.|.|.-|
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA 25 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLA 25 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHH
T ss_pred CEEEEEEecCCCccccHHHHHHHHH
Confidence 478999999975 446776443
No 117
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=25.68 E-value=1.1e+02 Score=22.60 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 89 EQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 89 ~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.++.+.+++++|.+- ++....+++ .+=..|++.++..+++|
T Consensus 227 ~~l~~~ik~~~v~~I-f~e~~~~~~-~~~~ia~~~g~~v~~ld 267 (291)
T 1pq4_A 227 KQLIDTAKENNLTMV-FGETQFSTK-SSEAIAAEIGAGVELLD 267 (291)
T ss_dssp HHHHHHHHTTTCCEE-EEETTSCCH-HHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHcCCCEE-EEeCCCChH-HHHHHHHHcCCeEEEEc
Confidence 344555555555543 223333333 23233455555555554
No 118
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=25.49 E-value=75 Score=23.89 Aligned_cols=36 Identities=3% Similarity=-0.220 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
.-.+.|++-|+ ++..-...+-.++-+.+.++++|.|
T Consensus 47 ~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D 82 (276)
T 3ngx_A 47 AKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKD 82 (276)
T ss_dssp HHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34778999999 8877777666677788999998876
No 119
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=25.19 E-value=1.8e+02 Score=20.73 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHhcCCeEEEEEEecCCc----hhHHHHHHHhcCCCEEEe
Q 036644 92 SKLCQAENIEFEIEVRPGVSL----KTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 92 ~~~c~~~~V~~~~~v~~G~~~----~~~I~~~a~~~~a~~vVl 130 (131)
.++|++.||.+...=....+. ...+++..+++++|+||+
T Consensus 47 ~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~ 89 (215)
T 3tqr_A 47 LKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVL 89 (215)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEE
Confidence 567889998876321111111 235779999999999986
No 120
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=25.04 E-value=48 Score=20.37 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=19.3
Q ss_pred eEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEE
Q 036644 7 ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFL 42 (131)
Q Consensus 7 r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~ll 42 (131)
+.+.|+|++. ... | +-. +++||+|.|+
T Consensus 66 ~~v~v~VNg~-~v~-----~--~~~-L~dGDeV~i~ 92 (98)
T 1vjk_A 66 ADVNIAVNGR-YVS-----W--DEE-LKDGDVVGVF 92 (98)
T ss_dssp SSBEEEETTB-CCC-----T--TCB-CCTTCEEEEE
T ss_pred CcEEEEECCE-ECC-----C--CCC-CCCCCEEEEE
Confidence 5688999987 332 2 445 7999997774
No 121
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=24.99 E-value=25 Score=19.98 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=23.2
Q ss_pred ceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEe
Q 036644 6 CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 6 ~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~ 45 (131)
.+.|.|++++. -..+ -+|.-. . +++||.|-|+..+
T Consensus 27 ~~~v~vavN~~-~v~~--~~~~~~-~-L~dgD~v~i~~~V 61 (64)
T 2cu3_A 27 LKGVAVLLNEE-AFLG--LEVPDR-P-LRDGDVVEVVALM 61 (64)
T ss_dssp GGGEEEEETTE-EEEG--GGCCCC-C-CCTTCEEEEEECC
T ss_pred CCcEEEEECCE-ECCc--cccCCc-C-CCCCCEEEEEeec
Confidence 45678899886 2222 356443 3 5899999998753
No 122
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=24.90 E-value=1.2e+02 Score=18.89 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCCEEEeC
Q 036644 115 VAVRVAKKFKATWIILD 131 (131)
Q Consensus 115 ~I~~~a~~~~a~~vVlD 131 (131)
...+..++.+.|+|++|
T Consensus 49 ~al~~~~~~~~dlvl~D 65 (143)
T 3m6m_D 49 QVLDAMAEEDYDAVIVD 65 (143)
T ss_dssp HHHHHHHHSCCSEEEEE
T ss_pred HHHHHHhcCCCCEEEEe
Confidence 34577778888888886
No 123
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=24.84 E-value=1.7e+02 Score=21.63 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 89 EQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 89 ~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
..+-+.+++.||.+.++|-+. +. -+++|.+.+|++|=|
T Consensus 117 ~~~i~~L~~~GIrVSLFIDpd--~~--qi~aA~~~GA~~IEL 154 (243)
T 1m5w_A 117 RDACKRLADAGIQVSLFIDAD--EE--QIKAAAEVGAPFIEI 154 (243)
T ss_dssp HHHHHHHHHTTCEEEEEECSC--HH--HHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCC--HH--HHHHHHHhCcCEEEE
Confidence 344555667899888777542 23 459999999999843
No 124
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=24.81 E-value=77 Score=23.95 Aligned_cols=37 Identities=8% Similarity=0.044 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
.-.+.|++-|+..+..-...+-.++-+.+.++++|.|
T Consensus 53 ~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 89 (285)
T 3p2o_A 53 SKAKACEECGIKSLVYHLNENITQNELLALINTLNHD 89 (285)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467899999999988887655566788999888876
No 125
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=24.46 E-value=67 Score=25.67 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCeEEEEEE--ecCCchhHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVR--PGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~--~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
|..+.+-+++.|+.+-+.-. .|+ +.+++.+.+++.+++.|+.
T Consensus 58 L~~L~~~L~~~G~~L~v~~~~~~g~-~~~~l~~l~~~~~~~~v~~ 101 (471)
T 1dnp_A 58 LNGLQIALAEKGIPLLFREVDDFVA-SVEIVKQVCAENSVTHLFY 101 (471)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSHHH-HHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEccCCCC-HHHHHHHHHHHcCCCEEEE
Confidence 44566667778887665322 575 5668999999999999886
No 126
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=24.44 E-value=92 Score=20.05 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=21.5
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEE
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llh 43 (131)
-+++.+|+-+-.+...|.+++... ++|+.+.|.-
T Consensus 78 D~I~~inG~~v~~~~~l~~~l~~~--~~g~~v~l~v 111 (134)
T 2l97_A 78 DVITKVDDKEIASSTDLQSALYNH--SIGDTIKITY 111 (134)
T ss_dssp CEEEEETTEECCCHHHHHHHHHHS--STTCEEEEEE
T ss_pred CEEEEECCEEcCCHHHHHHHHHhC--CCCCEEEEEE
Confidence 366788887434566777777654 4777655443
No 127
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=24.23 E-value=66 Score=24.36 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKAT 126 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~ 126 (131)
.-.+.|++-|+..+..-...+-..+-+.+.++++|.|
T Consensus 53 ~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 89 (288)
T 1b0a_A 53 SKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNAD 89 (288)
T ss_dssp HHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3467899999999988887666677788999999887
No 128
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.71 E-value=1.2e+02 Score=20.59 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHh---cCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKK---FKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~---~~a~~vVl 130 (131)
.+...+++.|.++.......|+ . .|.++.++ .++|+||.
T Consensus 31 ~l~~~l~~~G~~v~~~~iv~Dd-~-~i~~al~~a~~~~~DlVit 72 (164)
T 3pzy_A 31 IITEWLAQQGFSSAQPEVVADG-S-PVGEALRKAIDDDVDVILT 72 (164)
T ss_dssp HHHHHHHHTTCEECCCEEECSS-H-HHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeCCH-H-HHHHHHHHHHhCCCCEEEE
Confidence 3466777888887766666666 4 56565554 37899885
No 129
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=23.59 E-value=1.3e+02 Score=18.35 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=11.8
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
..+...+.+.|+|++|
T Consensus 40 al~~~~~~~~dlvl~D 55 (136)
T 3t6k_A 40 ALQQIYKNLPDALICD 55 (136)
T ss_dssp HHHHHHHSCCSEEEEE
T ss_pred HHHHHHhCCCCEEEEe
Confidence 4477777788888876
No 130
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=23.31 E-value=1e+02 Score=24.65 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
|..+.+-+++.|+.+. +..|+ +.+++.+.+++.+++.|+.+
T Consensus 67 L~~L~~~L~~~G~~L~--v~~g~-~~~~l~~l~~~~~~~~V~~~ 107 (489)
T 1np7_A 67 VQNLAESLQKVGNKLL--VTTGL-PEQVIPQIAKQINAKTIYYH 107 (489)
T ss_dssp HHHHHHHHHHTTCCEE--EEESC-HHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHCCCcEE--EEECC-HHHHHHHHHHHcCCCEEEEe
Confidence 4455666677787665 45685 56689999999999988763
No 131
>1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A*
Probab=23.22 E-value=1.1e+02 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=22.7
Q ss_pred EEEEecCCchhHHHHHHH---h--cCCCEEEeC
Q 036644 104 IEVRPGVSLKTVAVRVAK---K--FKATWIILD 131 (131)
Q Consensus 104 ~~v~~G~~~~~~I~~~a~---~--~~a~~vVlD 131 (131)
+.|+.|+.||..|.=.++ + .+..|+.+|
T Consensus 78 ~VVYaGsAPG~HI~fL~~lF~~l~~~lkwvLiD 110 (348)
T 1vpt_A 78 TVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLID 110 (348)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred eEEEeCcCCcchHHHHHHHhhhcCCceEEEEEC
Confidence 789999999999977666 5 357888877
No 132
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=23.13 E-value=47 Score=25.64 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.1
Q ss_pred hHhhhcccCCCCEEEEEEEe
Q 036644 26 GILKNLSLKHGDSLKFLAVL 45 (131)
Q Consensus 26 WaL~nv~~~~gD~l~llhv~ 45 (131)
|.|-|+ .++||.|.-.++-
T Consensus 26 w~ly~l-i~~gD~v~~~t~R 44 (358)
T 3agj_B 26 WLLRIT-LRPGDVVRKRTSR 44 (358)
T ss_dssp HHHHHH-CCTTCEEEEEEEE
T ss_pred HHHHHh-CCCCCEEEEEEEE
Confidence 999999 8999988777763
No 133
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.06 E-value=1.5e+02 Score=20.75 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCCc-hhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSL-KTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~-~~~I~~~a~~~~a~~vVl 130 (131)
.+.+.|++.|+.+.+....+++. ...+++.....++|-||+
T Consensus 29 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi 70 (291)
T 3egc_A 29 GVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLIL 70 (291)
T ss_dssp HHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 45556666666655433222211 112445555566666654
No 134
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=23.03 E-value=42 Score=25.95 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.8
Q ss_pred hHhhhcccCCCCEEEEEEEec
Q 036644 26 GILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 26 WaL~nv~~~~gD~l~llhv~~ 46 (131)
|.|-|+ .++||.|.-.++-.
T Consensus 24 w~lynl-i~~GD~v~a~T~Rk 43 (347)
T 2qi2_A 24 WYLRNI-LSEGDEVSAITFRR 43 (347)
T ss_dssp HHHHHH-CCTTCEEEEEEC--
T ss_pred HHHHHh-CCCCCEEEEEEEEE
Confidence 999999 99999998888744
No 135
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=22.73 E-value=1.8e+02 Score=21.88 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 87 EIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 87 ~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++.+.+..++.|+.+........+.. .+++.+++.+++.||+
T Consensus 170 ~~~~~~~~~~~~g~~v~~~~~~~~d~~-~~l~~i~~~~~~vii~ 212 (433)
T 4f11_A 170 VRNDLTGVLYGEDIEISDTESFSNDPC-TSVKKLKGNDVRIILG 212 (433)
T ss_dssp HHHHHHHHSSSSSCEEEEEEEESSCCH-HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHcCceEEEEeccCcCHH-HHHHHHhhCCCeEEEE
Confidence 456777788888988876555434455 4668899999999986
No 136
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.58 E-value=1.7e+02 Score=20.43 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=7.1
Q ss_pred HHHHHhcCCCEEEeC
Q 036644 117 VRVAKKFKATWIILD 131 (131)
Q Consensus 117 ~~~a~~~~a~~vVlD 131 (131)
++.+.+.+.-+|++|
T Consensus 82 ~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 82 IEEAKKAGIPVFAID 96 (293)
T ss_dssp HHHHHHTTCCEEEES
T ss_pred HHHHHHcCCCEEEec
Confidence 344444455554443
No 137
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=22.48 E-value=1.4e+02 Score=18.05 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=9.4
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
..+...+.+.|+||+|
T Consensus 46 a~~~~~~~~~dlii~d 61 (140)
T 3cg0_A 46 AVRCAPDLRPDIALVD 61 (140)
T ss_dssp HHHHHHHHCCSEEEEE
T ss_pred HHHHHHhCCCCEEEEe
Confidence 3355555666666665
No 138
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=22.33 E-value=1.4e+02 Score=18.11 Aligned_cols=14 Identities=29% Similarity=0.244 Sum_probs=6.8
Q ss_pred HHHHhcCCCEEEeC
Q 036644 118 RVAKKFKATWIILD 131 (131)
Q Consensus 118 ~~a~~~~a~~vVlD 131 (131)
+..++...|+||+|
T Consensus 45 ~~l~~~~~dlii~d 58 (142)
T 3cg4_A 45 DLLKKGFSGVVLLD 58 (142)
T ss_dssp HHHHTCCCEEEEEE
T ss_pred HHHHhcCCCEEEEe
Confidence 44444445555543
No 139
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=22.24 E-value=33 Score=22.10 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.|++.+++.|+.+++...-....+..+ ...+=-.||+||+
T Consensus 24 aL~~aA~~~G~~ikVEtqGs~G~~n~L-t~~~I~~Ad~VIi 63 (106)
T 2r4q_A 24 ALKEKAKELGVEIKVETNGSSGIKHKL-TAQEIEDAPAIIV 63 (106)
T ss_dssp HHHHHHHHHTCCEEEEEEETTEEESCC-CHHHHHHCSCEEE
T ss_pred HHHHHHHHCCCeEEEEecCCCCccCCC-CHHHHHhCCEEEE
Confidence 446677888988887776533333222 2222334555554
No 140
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.93 E-value=1.7e+02 Score=19.04 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCEEEeC
Q 036644 115 VAVRVAKKFKATWIILD 131 (131)
Q Consensus 115 ~I~~~a~~~~a~~vVlD 131 (131)
-..+..++.+.|+|++|
T Consensus 42 ~al~~~~~~~~dlvl~D 58 (184)
T 3rqi_A 42 EALKLAGAEKFEFITVX 58 (184)
T ss_dssp HHHHHHTTSCCSEEEEC
T ss_pred HHHHHHhhCCCCEEEEe
Confidence 35588888999999998
No 141
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Probab=21.80 E-value=79 Score=23.46 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEecC--Cch--hHHHHHHHhcCCCEE
Q 036644 88 IEQISKLCQAENIEFEIEVRPGV--SLK--TVAVRVAKKFKATWI 128 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G~--~~~--~~I~~~a~~~~a~~v 128 (131)
+..+.+.|...+..+++.+..+- +.+ ...|+.+.+.+||+|
T Consensus 123 i~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfV 167 (260)
T 1p1x_A 123 VKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFI 167 (260)
T ss_dssp HHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEE
Confidence 55667778766788887776532 223 258999999999997
No 142
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=21.77 E-value=2e+02 Score=21.01 Aligned_cols=17 Identities=18% Similarity=0.671 Sum_probs=7.3
Q ss_pred HHHHHHHhc-CCCEEEeC
Q 036644 115 VAVRVAKKF-KATWIILD 131 (131)
Q Consensus 115 ~I~~~a~~~-~a~~vVlD 131 (131)
.+.+.+++. +.-+|++|
T Consensus 76 ~~~~~a~~~p~~p~v~id 93 (318)
T 2fqx_A 76 AVIETSARFPKQKFLVID 93 (318)
T ss_dssp HHHHHHHHCTTSCEEEES
T ss_pred HHHHHHHHCCCCEEEEEc
Confidence 343444432 34455544
No 143
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=21.64 E-value=1.1e+02 Score=23.24 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEeC
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
.+-..|...|+++.+.+-.+.+ ...+ +..+.++|.+++.|
T Consensus 101 alA~~aa~~G~~~~IvmP~~~~-~~k~-~~~~~~GA~Vv~v~ 140 (344)
T 3vc3_A 101 SMAFMAAMKGYKMVLTMPSYTS-LERR-VTMRAFGAELILTD 140 (344)
T ss_dssp HHHHHHHHHTCEEEEEEETTSC-HHHH-HHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCcEEEEECCCCh-HHHH-HHHHHcCCEEEEEC
Confidence 5567888999999877766654 4455 89999999998764
No 144
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=21.46 E-value=1.2e+02 Score=22.26 Aligned_cols=15 Identities=20% Similarity=0.029 Sum_probs=8.1
Q ss_pred HHHHHHhcCCCEEEe
Q 036644 116 AVRVAKKFKATWIIL 130 (131)
Q Consensus 116 I~~~a~~~~a~~vVl 130 (131)
+++.+++.++..|+.
T Consensus 215 l~~~ik~~~v~~if~ 229 (284)
T 2prs_A 215 IRTQLVEQKATCVFA 229 (284)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 445555566655543
No 145
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=21.45 E-value=1.6e+02 Score=20.62 Aligned_cols=38 Identities=0% Similarity=-0.182 Sum_probs=20.9
Q ss_pred HHHHHhcCCe--EEEEEEecCCchhHHHHHHHh----cCCCEEEe
Q 036644 92 SKLCQAENIE--FEIEVRPGVSLKTVAVRVAKK----FKATWIIL 130 (131)
Q Consensus 92 ~~~c~~~~V~--~~~~v~~G~~~~~~I~~~a~~----~~a~~vVl 130 (131)
.+++++.|.. +......+|++. .|.++.++ .++|+||.
T Consensus 29 ~~~L~~~G~~~~v~~~~iV~Dd~~-~I~~al~~a~~~~~~DlVit 72 (195)
T 1di6_A 29 EEWLTSALTTPFELETRLIPDEQA-IIEQTLCELVDEMSCHLVLT 72 (195)
T ss_dssp HHHHHHHBCSCEEEEEEEEESCHH-HHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHcCCCCceEEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEE
Confidence 4455566765 333344455554 44444443 37899885
No 146
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=21.45 E-value=89 Score=22.45 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCeEEEEEEe-c------CCch--hHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRP-G------VSLK--TVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~-G------~~~~--~~I~~~a~~~~a~~vVl 130 (131)
+..+.+.|++.++.+.+.+.. | ..+. .-+++.+.+.+||+|.+
T Consensus 134 ~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~ 185 (273)
T 2qjg_A 134 LGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKT 185 (273)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEE
Confidence 456788898889888765532 1 1222 12457889999998865
No 147
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=21.35 E-value=1.2e+02 Score=22.16 Aligned_cols=40 Identities=15% Similarity=-0.021 Sum_probs=17.8
Q ss_pred HHHHHHhcCCeEEEEEEe--cCCch----hHHHHHHHhcCCCEEEe
Q 036644 91 ISKLCQAENIEFEIEVRP--GVSLK----TVAVRVAKKFKATWIIL 130 (131)
Q Consensus 91 ~~~~c~~~~V~~~~~v~~--G~~~~----~~I~~~a~~~~a~~vVl 130 (131)
+..+|+..|++....+.. |..|. ..+++.+++.++..|+.
T Consensus 187 f~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~ 232 (284)
T 3cx3_A 187 FSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFT 232 (284)
T ss_dssp CHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEE
T ss_pred hHHHHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 355566666654433211 22221 12445555556555543
No 148
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=21.30 E-value=1.8e+02 Score=21.82 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCeEEEEEEec----CCch--hHHHHHHHhcCCCEEEe
Q 036644 88 IEQISKLCQAENIEFEIEVRPG----VSLK--TVAVRVAKKFKATWIIL 130 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~~G----~~~~--~~I~~~a~~~~a~~vVl 130 (131)
+.++.+.|.++++.+-+.-..| .+++ ...|+.|.+++||+|-.
T Consensus 160 i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt 208 (295)
T 3glc_A 160 IIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKT 208 (295)
T ss_dssp HHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 5577888988998865543222 2333 13678999999999853
No 149
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=21.29 E-value=1.3e+02 Score=21.47 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=25.8
Q ss_pred HHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644 92 SKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 92 ~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl 130 (131)
.++|+++||.+...=.... ..+.+.+..+++++|+||+
T Consensus 51 l~~A~~~gIp~~~~~~~~~-~~~~~~~~L~~~~~Dlivl 88 (215)
T 3kcq_A 51 LLIAQSYGIPTFVVKRKPL-DIEHISTVLREHDVDLVCL 88 (215)
T ss_dssp HHHHHHTTCCEEECCBTTB-CHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEeCcccC-ChHHHHHHHHHhCCCEEEE
Confidence 4678889988763211111 1246779999999999986
No 150
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=21.26 E-value=54 Score=25.51 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=17.1
Q ss_pred hHhhhcccCCCCEEEEEEEec
Q 036644 26 GILKNLSLKHGDSLKFLAVLH 46 (131)
Q Consensus 26 WaL~nv~~~~gD~l~llhv~~ 46 (131)
|.|-|+ .++||.|.-.++-.
T Consensus 44 w~lynl-I~~GD~V~a~T~Rk 63 (364)
T 3obw_A 44 WLLHLI-LEKDDKVVAKTTRD 63 (364)
T ss_dssp HHHHHH-CCTTCEEEEEEEEE
T ss_pred HHHHHh-ccCCCEEEEEEEEE
Confidence 999999 89999988877543
No 151
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=21.18 E-value=1.4e+02 Score=21.06 Aligned_cols=41 Identities=5% Similarity=0.024 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCeEEEEEEecCCc----hhHHHHHHHhcCCCEEEe
Q 036644 90 QISKLCQAENIEFEIEVRPGVSL----KTVAVRVAKKFKATWIIL 130 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~----~~~I~~~a~~~~a~~vVl 130 (131)
...++|++.||.+...-....+. .+.+.+..+++++|+||+
T Consensus 41 ~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~ 85 (212)
T 1jkx_A 41 FGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVL 85 (212)
T ss_dssp HHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEE
T ss_pred HHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEE
Confidence 35788999999876311111111 235779999999999986
No 152
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=21.07 E-value=1.5e+02 Score=18.07 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=11.6
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
..+..++.+.|+||+|
T Consensus 43 a~~~l~~~~~dlii~D 58 (144)
T 3kht_A 43 ALYQVQQAKYDLIILD 58 (144)
T ss_dssp HHHHHTTCCCSEEEEC
T ss_pred HHHHhhcCCCCEEEEe
Confidence 4477777777888776
No 153
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=21.06 E-value=1.6e+02 Score=18.30 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=11.7
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
..+..++.+.|+||+|
T Consensus 50 a~~~l~~~~~dlvi~D 65 (153)
T 3hv2_A 50 ALQLLASREVDLVISA 65 (153)
T ss_dssp HHHHHHHSCCSEEEEE
T ss_pred HHHHHHcCCCCEEEEe
Confidence 4477777778888876
No 154
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=21.06 E-value=44 Score=19.95 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=18.0
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEE
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFL 42 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~ll 42 (131)
.+.|+|++. ... .+.. +++||+|.|+
T Consensus 58 ~~~v~VN~~-~v~-------~~~~-l~~gDeV~i~ 83 (89)
T 3po0_A 58 HINVLRNGE-AAA-------LGEA-TAAGDELALF 83 (89)
T ss_dssp TSEEEETTE-ECC-------TTSB-CCTTCEEEEE
T ss_pred cEEEEECCE-ECC-------CCcc-cCCCCEEEEE
Confidence 478889886 322 2555 7899988775
No 155
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.02 E-value=1.4e+02 Score=17.56 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=10.1
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
..+..++...|+|++|
T Consensus 37 a~~~~~~~~~dlvi~D 52 (124)
T 1mb3_A 37 ALSIARENKPDLILMD 52 (124)
T ss_dssp HHHHHHHHCCSEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 3356666667777765
No 156
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=20.83 E-value=1.4e+02 Score=17.74 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
..+...+.+.|+||+|
T Consensus 42 a~~~l~~~~~dlii~d 57 (132)
T 3lte_A 42 AGIKLSTFEPAIMTLD 57 (132)
T ss_dssp HHHHHHHTCCSEEEEE
T ss_pred HHHHHHhcCCCEEEEe
Confidence 3466666667777665
No 157
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.82 E-value=1.4e+02 Score=17.74 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCCEEEeC
Q 036644 115 VAVRVAKKFKATWIILD 131 (131)
Q Consensus 115 ~I~~~a~~~~a~~vVlD 131 (131)
-..+..++.+.|+||+|
T Consensus 42 ~a~~~l~~~~~dlvi~d 58 (130)
T 3eod_A 42 DALELLGGFTPDLMICD 58 (130)
T ss_dssp HHHHHHTTCCCSEEEEC
T ss_pred HHHHHHhcCCCCEEEEe
Confidence 34577788888888887
No 158
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=20.70 E-value=1.5e+02 Score=17.96 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=11.9
Q ss_pred HHHHHHhcCCCEEEeC
Q 036644 116 AVRVAKKFKATWIILD 131 (131)
Q Consensus 116 I~~~a~~~~a~~vVlD 131 (131)
..+...+.+.|+||+|
T Consensus 40 a~~~l~~~~~dlvi~d 55 (142)
T 2qxy_A 40 AFTFLRREKIDLVFVD 55 (142)
T ss_dssp HHHHHTTSCCSEEEEE
T ss_pred HHHHHhccCCCEEEEe
Confidence 4477777788888876
No 159
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=20.68 E-value=1.2e+02 Score=18.16 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=21.8
Q ss_pred EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEE
Q 036644 8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLA 43 (131)
Q Consensus 8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llh 43 (131)
-++++||+-+-.+...|..++.+. ++|+.+.|.-
T Consensus 22 D~I~~InG~~v~~~~~l~~~l~~~--~~g~~v~l~v 55 (91)
T 2kjp_A 22 DKIISADGKNYQSAEKLIDYISSK--KAGDKVTLKI 55 (91)
T ss_dssp CEEEEETTBCCSSHHHHHHHHSSC--CSSCEECEEE
T ss_pred CEEEEECCEECCCHHHHHHHHHcC--CCCCEEEEEE
Confidence 467799998534566666666543 4788765543
No 160
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=20.59 E-value=56 Score=19.93 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEE
Q 036644 90 QISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWII 129 (131)
Q Consensus 90 ~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vV 129 (131)
.+...+++.++..+-.+..||.+.. ++.|++.+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~vgD~~~d--i~~a~~~G~~~i~ 116 (137)
T 2pr7_A 79 AFQAAADAIDLPMRDCVLVDDSILN--VRGAVEAGLVGVY 116 (137)
T ss_dssp HHHHHHHHTTCCGGGEEEEESCHHH--HHHHHHHTCEEEE
T ss_pred HHHHHHHHcCCCcccEEEEcCCHHH--HHHHHHCCCEEEE
Confidence 4566777778776556678887764 5888888876554
No 161
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=20.40 E-value=2.2e+02 Score=22.03 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCeEEEEEE-ecCCchhHHHHHHHhcCCCEEEeC
Q 036644 88 IEQISKLCQAENIEFEIEVR-PGVSLKTVAVRVAKKFKATWIILD 131 (131)
Q Consensus 88 l~~~~~~c~~~~V~~~~~v~-~G~~~~~~I~~~a~~~~a~~vVlD 131 (131)
++.++.+++.-++++-++.. .|..+. ..+.+.+.+||.|+++
T Consensus 195 ~~~I~~l~~~~~~PVivK~vg~g~s~e--~A~~l~~aGad~I~V~ 237 (365)
T 3sr7_A 195 KKHLSDYAKKLQLPFILKEVGFGMDVK--TIQTAIDLGVKTVDIS 237 (365)
T ss_dssp HHHHHHHHHHCCSCEEEEECSSCCCHH--HHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCHH--HHHHHHHcCCCEEEEe
Confidence 45677788777888888843 334433 4588889999999874
No 162
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.29 E-value=1.3e+02 Score=17.13 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=8.5
Q ss_pred HHHHHhcCCCEEEeC
Q 036644 117 VRVAKKFKATWIILD 131 (131)
Q Consensus 117 ~~~a~~~~a~~vVlD 131 (131)
.+...+...|+||+|
T Consensus 38 ~~~l~~~~~dlii~d 52 (119)
T 2j48_A 38 LDQLDLLQPIVILMA 52 (119)
T ss_dssp HHHHHHHCCSEEEEE
T ss_pred HHHHHhcCCCEEEEe
Confidence 355555566666654
No 163
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=20.22 E-value=61 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=24.0
Q ss_pred EEEEEecCCchhHHHHHHHhcC-----CCEEEeC
Q 036644 103 EIEVRPGVSLKTVAVRVAKKFK-----ATWIILD 131 (131)
Q Consensus 103 ~~~v~~G~~~~~~I~~~a~~~~-----a~~vVlD 131 (131)
...+++|+.+|..|.-.++... ..|+++|
T Consensus 62 ~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiD 95 (307)
T 3mag_A 62 ATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLID 95 (307)
T ss_dssp CEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEecccCccHHHHHHHhchhhCCCeEEEEEc
Confidence 4789999999999988888554 5888887
No 164
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=20.17 E-value=58 Score=25.46 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.6
Q ss_pred hHhhhcccCCCCEEEEEEE
Q 036644 26 GILKNLSLKHGDSLKFLAV 44 (131)
Q Consensus 26 WaL~nv~~~~gD~l~llhv 44 (131)
|.|-|+ .++||.|.-.+.
T Consensus 29 w~lynl-i~~gD~v~~~T~ 46 (386)
T 2vgn_A 29 FTVYQI-VDKDDELIFKKK 46 (386)
T ss_dssp HHHHTT-CCTTCEEEEEEC
T ss_pred HHHHHh-cCCCCEEEEEEE
Confidence 999999 899998876665
Done!