Query 036649
Match_columns 110
No_of_seqs 141 out of 1075
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 4E-48 8.7E-53 254.1 11.7 110 1-110 1-112 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 2E-47 4.4E-52 246.5 9.6 106 5-110 2-107 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 3.9E-46 8.4E-51 235.3 9.5 110 1-110 1-110 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 2.7E-43 5.8E-48 232.8 13.4 106 5-110 3-108 (152)
5 PLN00172 ubiquitin conjugating 100.0 8E-43 1.7E-47 229.5 13.1 105 6-110 3-107 (147)
6 KOG0418 Ubiquitin-protein liga 100.0 9.8E-41 2.1E-45 221.8 9.2 109 1-110 1-113 (200)
7 KOG0421 Ubiquitin-protein liga 100.0 1.7E-40 3.6E-45 212.7 7.6 107 4-110 29-135 (175)
8 KOG0425 Ubiquitin-protein liga 100.0 9.4E-39 2E-43 207.0 10.8 107 3-109 4-124 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 7.2E-39 1.6E-43 209.0 9.4 103 8-110 1-105 (140)
10 KOG0426 Ubiquitin-protein liga 100.0 1.1E-38 2.5E-43 201.7 9.9 109 1-109 1-123 (165)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 5.6E-38 1.2E-42 205.1 11.8 104 7-110 2-106 (141)
12 KOG0424 Ubiquitin-protein liga 100.0 5.2E-38 1.1E-42 200.9 9.9 110 1-110 1-117 (158)
13 smart00212 UBCc Ubiquitin-conj 100.0 2.9E-36 6.3E-41 197.8 11.8 104 7-110 1-106 (145)
14 KOG0427 Ubiquitin conjugating 100.0 6.6E-35 1.4E-39 184.4 10.6 108 1-109 12-120 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 1.2E-33 2.5E-38 180.2 8.9 104 5-109 3-108 (153)
16 KOG0894 Ubiquitin-protein liga 100.0 2.3E-31 4.9E-36 180.5 11.5 107 1-109 1-111 (244)
17 KOG0420 Ubiquitin-protein liga 100.0 1.5E-31 3.2E-36 175.8 7.0 105 3-110 27-135 (184)
18 KOG0416 Ubiquitin-protein liga 100.0 3.5E-31 7.5E-36 173.8 7.0 103 1-107 1-104 (189)
19 KOG0423 Ubiquitin-protein liga 100.0 2.8E-30 6.1E-35 170.2 4.9 106 5-110 11-116 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 4.2E-26 9.2E-31 157.7 9.7 104 3-109 10-116 (314)
21 KOG0429 Ubiquitin-conjugating 99.8 2.9E-19 6.3E-24 122.1 9.2 103 7-110 22-128 (258)
22 KOG0895 Ubiquitin-conjugating 99.8 7.3E-20 1.6E-24 146.1 6.2 104 7-110 854-966 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 7.3E-18 1.6E-22 134.8 10.1 107 4-110 282-399 (1101)
24 KOG0896 Ubiquitin-conjugating 99.7 1.2E-16 2.6E-21 101.7 7.1 107 4-110 5-118 (138)
25 KOG0897 Predicted ubiquitin-co 99.0 3.2E-10 7E-15 70.6 2.5 57 53-109 13-71 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.8 1.5E-08 3.4E-13 65.5 5.2 61 49-109 34-100 (133)
27 PF08694 UFC1: Ubiquitin-fold 98.6 2E-08 4.4E-13 65.0 2.3 95 6-106 26-135 (161)
28 PF05743 UEV: UEV domain; Int 98.3 3.3E-06 7.1E-11 53.9 6.5 72 33-109 32-111 (121)
29 KOG3357 Uncharacterized conser 98.0 1.9E-05 4E-10 50.7 5.0 95 6-106 29-138 (167)
30 PF05773 RWD: RWD domain; Int 97.2 0.0019 4.1E-08 39.7 5.9 69 7-76 4-74 (113)
31 KOG2391 Vacuolar sorting prote 96.9 0.0029 6.2E-08 46.7 5.8 72 32-108 51-130 (365)
32 smart00591 RWD domain in RING 96.8 0.014 3.1E-07 35.4 7.5 27 49-75 39-65 (107)
33 PF14462 Prok-E2_E: Prokaryoti 96.3 0.043 9.3E-07 35.1 7.5 52 23-75 13-66 (122)
34 PF14457 Prok-E2_A: Prokaryoti 95.7 0.098 2.1E-06 35.0 7.4 55 55-109 57-120 (162)
35 KOG4018 Uncharacterized conser 91.9 0.84 1.8E-05 31.9 6.1 63 9-73 7-71 (215)
36 KOG0309 Conserved WD40 repeat- 91.7 1.2 2.5E-05 36.8 7.5 67 8-75 424-491 (1081)
37 PF09765 WD-3: WD-repeat regio 85.0 3.4 7.5E-05 30.2 5.7 56 6-70 101-156 (291)
38 PF06113 BRE: Brain and reprod 80.8 8.5 0.00018 28.8 6.3 66 32-109 52-120 (333)
39 cd00421 intradiol_dioxygenase 79.9 3.4 7.4E-05 26.9 3.7 25 49-73 64-89 (146)
40 cd03457 intradiol_dioxygenase_ 78.9 3.7 8.1E-05 28.1 3.8 26 49-74 85-110 (188)
41 smart00340 HALZ homeobox assoc 75.1 3.9 8.4E-05 21.2 2.3 16 5-20 20-35 (44)
42 cd03459 3,4-PCD Protocatechuat 73.2 6.7 0.00015 26.1 3.7 25 50-74 72-101 (158)
43 PF14460 Prok-E2_D: Prokaryoti 72.4 1.8 3.9E-05 29.2 0.9 19 74-92 90-111 (175)
44 PF04881 Adeno_GP19K: Adenovir 67.8 11 0.00024 24.3 3.7 32 29-60 43-75 (139)
45 TIGR02423 protocat_alph protoc 65.5 11 0.00024 25.9 3.6 25 49-73 95-124 (193)
46 PF03366 YEATS: YEATS family; 64.3 28 0.0006 20.6 5.0 42 34-77 2-43 (84)
47 PHA03200 uracil DNA glycosylas 64.1 7.2 0.00016 28.1 2.6 37 32-71 81-118 (255)
48 cd03463 3,4-PCD_alpha Protocat 62.1 14 0.00031 25.2 3.6 24 50-73 92-120 (185)
49 TIGR03737 PRTRC_B PRTRC system 56.4 6 0.00013 28.0 1.1 19 74-92 131-152 (228)
50 PF00845 Gemini_BL1: Geminivir 56.4 33 0.00071 24.8 4.7 47 32-78 101-155 (276)
51 TIGR00628 ung uracil-DNA glyco 56.3 21 0.00046 25.0 3.8 37 32-71 49-87 (212)
52 KOG4445 Uncharacterized conser 55.4 19 0.0004 26.9 3.4 25 51-75 45-69 (368)
53 TIGR02439 catechol_proteo cate 49.0 29 0.00063 25.4 3.6 24 50-73 180-221 (285)
54 cd03464 3,4-PCD_beta Protocate 47.0 34 0.00074 24.1 3.6 24 50-73 122-152 (220)
55 cd03461 1,2-HQD Hydroxyquinol 47.0 33 0.00072 25.0 3.6 24 50-73 172-213 (277)
56 PF06113 BRE: Brain and reprod 46.9 36 0.00077 25.6 3.8 24 51-74 306-329 (333)
57 KOG3285 Spindle assembly check 45.8 49 0.0011 22.8 4.0 42 5-46 120-161 (203)
58 TIGR02422 protocat_beta protoc 44.9 38 0.00083 23.8 3.6 24 50-73 117-147 (220)
59 TIGR02438 catachol_actin catec 44.2 40 0.00086 24.7 3.7 24 50-73 184-225 (281)
60 PRK15486 hpaC 4-hydroxyphenyla 44.2 17 0.00036 24.5 1.7 67 9-94 6-77 (170)
61 PHA03199 uracil DNA glycosylas 43.8 36 0.00078 25.2 3.4 36 33-71 137-174 (304)
62 COG2819 Predicted hydrolase of 43.4 47 0.001 24.1 4.0 29 46-74 16-46 (264)
63 cd03460 1,2-CTD Catechol 1,2 d 43.1 41 0.0009 24.6 3.7 24 50-73 176-217 (282)
64 PF12065 DUF3545: Protein of u 42.7 21 0.00045 19.9 1.6 13 6-18 36-48 (59)
65 cd05845 Ig2_L1-CAM_like Second 42.2 77 0.0017 19.1 4.5 26 48-75 16-41 (95)
66 TIGR02465 chlorocat_1_2 chloro 40.6 50 0.0011 23.7 3.7 25 49-73 149-191 (246)
67 TIGR02296 HpaC 4-hydroxyphenyl 40.4 18 0.00038 23.7 1.3 30 65-94 36-68 (154)
68 PRK11700 hypothetical protein; 40.1 1.2E+02 0.0027 20.8 6.4 70 33-108 88-184 (187)
69 PF14135 DUF4302: Domain of un 38.1 1E+02 0.0022 21.6 5.0 71 4-85 9-103 (235)
70 PHA03201 uracil DNA glycosylas 37.9 45 0.00097 24.9 3.2 36 33-71 151-188 (318)
71 TIGR03615 RutF pyrimidine util 37.4 22 0.00047 23.4 1.4 67 11-94 4-73 (156)
72 KOG0177 20S proteasome, regula 37.1 11 0.00023 26.1 -0.1 25 83-107 134-158 (200)
73 PHA03204 uracil DNA glycosylas 36.8 55 0.0012 24.5 3.5 36 33-71 151-188 (322)
74 COG1853 Conserved protein/doma 36.7 28 0.00061 23.2 1.9 30 66-95 45-77 (176)
75 PF13950 Epimerase_Csub: UDP-g 35.2 26 0.00056 19.4 1.3 14 95-108 37-50 (62)
76 KOG1047 Bifunctional leukotrie 35.0 43 0.00094 27.0 2.9 29 46-75 248-279 (613)
77 smart00107 BTK Bruton's tyrosi 34.4 18 0.0004 18.0 0.5 15 76-90 7-22 (36)
78 PF00779 BTK: BTK motif; Inte 34.3 15 0.00032 17.8 0.1 15 76-90 2-17 (32)
79 cd03458 Catechol_intradiol_dio 34.1 72 0.0016 23.0 3.7 24 50-73 156-197 (256)
80 COG4957 Predicted transcriptio 33.5 22 0.00047 23.3 0.9 18 52-69 103-120 (148)
81 PF11745 DUF3304: Protein of u 33.4 20 0.00042 22.5 0.7 20 83-102 49-68 (118)
82 PF00775 Dioxygenase_C: Dioxyg 31.6 36 0.00078 23.1 1.8 25 49-73 82-124 (183)
83 PRK05254 uracil-DNA glycosylas 31.3 82 0.0018 22.2 3.6 37 32-71 55-93 (224)
84 PF09606 Med15: ARC105 or Med1 30.7 17 0.00036 30.5 0.0 25 51-75 714-738 (799)
85 PHA03347 uracil DNA glycosylas 30.5 49 0.0011 23.9 2.4 37 32-71 75-112 (252)
86 cd03462 1,2-CCD chlorocatechol 29.6 94 0.002 22.3 3.7 25 49-73 150-192 (247)
87 PF09458 H_lectin: H-type lect 29.3 88 0.0019 17.2 2.9 21 52-73 2-22 (72)
88 PF14532 Sigma54_activ_2: Sigm 28.6 1.4E+02 0.003 18.6 4.1 29 3-46 4-32 (138)
89 PF03487 IL13: Interleukin-13; 28.5 64 0.0014 16.5 1.9 17 3-19 26-42 (43)
90 PF09929 DUF2161: Uncharacteri 28.2 78 0.0017 20.2 2.7 21 3-23 26-46 (118)
91 KOG3696 Aspartyl beta-hydroxyl 26.9 2.3E+02 0.0049 21.3 5.2 24 61-84 303-326 (334)
92 PF14909 SPATA6: Spermatogenes 25.1 2.1E+02 0.0045 18.8 5.0 51 23-75 86-137 (140)
93 COG3866 PelB Pectate lyase [Ca 24.4 1.6E+02 0.0034 22.2 4.0 40 34-73 197-239 (345)
94 PF12259 DUF3609: Protein of u 24.2 53 0.0012 24.9 1.7 22 6-27 34-55 (361)
95 PF08675 RNA_bind: RNA binding 24.2 76 0.0016 19.1 2.0 20 42-63 1-20 (87)
96 PRK05892 nucleoside diphosphat 24.1 86 0.0019 20.8 2.5 18 1-18 8-25 (158)
97 PF07380 Pneumo_M2: Pneumoviru 24.0 47 0.001 19.7 1.1 50 57-106 7-70 (89)
98 TIGR01462 greA transcription e 23.6 91 0.002 20.3 2.6 18 1-18 2-19 (151)
99 PF06943 zf-LSD1: LSD1 zinc fi 23.1 48 0.001 15.1 0.8 12 62-73 9-20 (25)
100 PF02970 TBCA: Tubulin binding 22.6 1E+02 0.0022 18.4 2.4 16 3-18 6-21 (90)
101 PF06305 DUF1049: Protein of u 21.7 96 0.0021 16.9 2.1 15 5-19 49-63 (68)
102 PF05709 Sipho_tail: Phage tai 21.6 2.7E+02 0.0058 18.9 6.1 61 5-66 53-115 (249)
103 PF07325 Curto_V2: Curtovirus 21.4 34 0.00074 21.5 0.2 8 58-65 8-15 (126)
104 PF11819 DUF3338: Domain of un 21.1 52 0.0011 21.5 1.0 14 58-71 68-85 (138)
105 PF09967 DUF2201: VWA-like dom 20.8 2.3E+02 0.005 17.7 4.1 30 1-30 11-40 (126)
106 PF08170 POPLD: POPLD (NUC188) 20.4 48 0.001 19.8 0.7 11 57-67 41-51 (92)
107 COG3140 Uncharacterized protei 20.1 1.7E+02 0.0037 16.1 3.0 21 4-24 32-52 (60)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-48 Score=254.12 Aligned_cols=110 Identities=57% Similarity=1.162 Sum_probs=105.7
Q ss_pred CChH-HHHHHHHHHHHHhhCCCCCeEEeeCCC-CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcc
Q 036649 1 MSTP-AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (110)
Q Consensus 1 Ms~~-~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (110)
|++. |.+||++|++++++++++++++.+.++ |+++|.+.|.||++||||||.|++.|.||++||++||+|+|.|+|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 4544 899999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 79 pnv~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|||+.+|+||+|+|+++|+|++++++||++||
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~ 112 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQ 112 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHH
Confidence 99999999999999999999999999999986
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-47 Score=246.46 Aligned_cols=106 Identities=47% Similarity=1.030 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccCC
Q 036649 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 84 (110)
+.+||.||++++++++++|+++.+.++|+++|+++|.||.|||||||.|++.|.||++||++||+|+|.|+||||||+..
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 85 GSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 85 G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|.||+|+|++.|+|+++|.+||++|+
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~ 107 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSIC 107 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHH
Confidence 99999999999999999999999985
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-46 Score=235.29 Aligned_cols=110 Identities=85% Similarity=1.441 Sum_probs=108.9
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
||+.|.|||++|+++++++++.|++..|.++|+..|.++|+||++|||+||.|++.|.|+++||.+||.|+|++.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.+|+|+|...|+|+|++.+||.+||
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQ 110 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQ 110 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHH
Confidence 999999999999999999999999999997
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.7e-43 Score=232.81 Aligned_cols=106 Identities=43% Similarity=0.900 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccCC
Q 036649 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 84 (110)
+.|||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 85 GSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 85 G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|.||+++|.++|+|++||++||++||
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~ 108 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQ 108 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHH
Confidence 99999999999999999999999985
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=8e-43 Score=229.53 Aligned_cols=105 Identities=49% Similarity=1.008 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccCCC
Q 036649 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 85 (110)
.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCCCCCCCcccHHHHHhhhC
Q 036649 86 SICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 86 ~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
.||+++|.++|+|++|+++||.+||
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~ 107 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSIS 107 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHH
Confidence 9999999999999999999999885
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-41 Score=221.83 Aligned_cols=109 Identities=42% Similarity=0.831 Sum_probs=105.3
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCc
Q 036649 1 MSTPAKKRLMRDFKRLQQDP---PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (110)
||. +.+||++|.+++.+++ ..||.+...++|+.+..+.|.||+|||||||.|.++|.+|++||++||+|+|.|+||
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 788 8999999999999987 579999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 78 Hpnv~-~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
||||+ .+|.||+|+|++.|++++|++++|++||
T Consensus 80 HPnVSs~tGaICLDilkd~Wa~slTlrtvLislQ 113 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILKDQWAASLTLRTVLISLQ 113 (200)
T ss_pred cCCCCcccccchhhhhhcccchhhhHHHHHHHHH
Confidence 99998 7999999999999999999999999987
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=212.65 Aligned_cols=107 Identities=46% Similarity=0.891 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccC
Q 036649 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 83 (110)
...|||++|+..|+....+||++.|+++|++.|.++|.||.+|+|+|..|++.+.||.+||++||.|+|+|+.||||||.
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~ 108 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL 108 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 84 DGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 84 ~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
.|+||+|+|+++|+..|++++||++||
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQ 135 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQ 135 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999997
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-39 Score=206.96 Aligned_cols=107 Identities=44% Similarity=0.908 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeeC-CCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (110)
+.+..-|+++|++|++++.+|+++... +.|+++|.+.|.||++|+||||.|+..+.||.+||.+||+++|.+++|||||
T Consensus 4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 356678999999999999999999885 5599999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCC-------------CCCCCcccHHHHHhhh
Q 036649 82 YADGSICLDILQ-------------NQWSPIYDVAAILTSI 109 (110)
Q Consensus 82 ~~~G~icl~~l~-------------~~W~p~~~i~~il~~i 109 (110)
+++|.+|+++|. +.|+|..|+++||++|
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSi 124 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSI 124 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHH
Confidence 999999999995 3599999999999886
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=7.2e-39 Score=209.04 Aligned_cols=103 Identities=51% Similarity=1.073 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhCCCCCeEEeeCCC-CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccCCCc
Q 036649 8 RLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (110)
Q Consensus 8 Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 86 (110)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999776 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCC-CCCCcccHHHHHhhhC
Q 036649 87 ICLDILQN-QWSPIYDVAAILTSIQ 110 (110)
Q Consensus 87 icl~~l~~-~W~p~~~i~~il~~i~ 110 (110)
||+++|.. .|+|++++.+||.+|+
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~ 105 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQ 105 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHH
T ss_pred chhhhhhcccCCcccccccHHHHHH
Confidence 99999985 5999999999999874
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=201.71 Aligned_cols=109 Identities=47% Similarity=0.982 Sum_probs=104.4
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEee-CCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (110)
|+..|+|||++|+++|.+++++||.+.| .++|.+.|.+.|.||++|+|+||.|..++.||.+||.+||+++|.-.+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 8889999999999999999999999988 678999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEeccCCC-------------CCCCCcccHHHHHhhh
Q 036649 80 NIYADGSICLDILQ-------------NQWSPIYDVAAILTSI 109 (110)
Q Consensus 80 nv~~~G~icl~~l~-------------~~W~p~~~i~~il~~i 109 (110)
||+.+|+||+++|. +.|+|..+++.||+++
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV 123 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSV 123 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHH
Confidence 99999999999995 4599999999999875
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.6e-38 Score=205.13 Aligned_cols=104 Identities=51% Similarity=1.097 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccCCCc
Q 036649 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (110)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 86 (110)
|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCC-CCCcccHHHHHhhhC
Q 036649 87 ICLDILQNQ-WSPIYDVAAILTSIQ 110 (110)
Q Consensus 87 icl~~l~~~-W~p~~~i~~il~~i~ 110 (110)
||+++|... |+|++++++||.+|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~ 106 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQ 106 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHH
Confidence 999999877 999999999999874
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-38 Score=200.93 Aligned_cols=110 Identities=42% Similarity=0.874 Sum_probs=104.9
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeC-----CCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQ-----DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~-----~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
||+.+..||++|-+.+.++.+-|+++.|. ..|+..|.+.|.|++||+||||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 89999999999999999999999999884 3478999999999999999999999999999999999999999999
Q ss_pred CccccccCCCcEeccCCCCC--CCCcccHHHHHhhhC
Q 036649 76 MFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQ 110 (110)
Q Consensus 76 i~Hpnv~~~G~icl~~l~~~--W~p~~~i~~il~~i~ 110 (110)
.|||||+.+|.|||++|.++ |+|++||.+||.+||
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIq 117 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQ 117 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHH
Confidence 99999999999999999765 999999999999987
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.9e-36 Score=197.83 Aligned_cols=104 Identities=50% Similarity=1.068 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCC-CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccCCC
Q 036649 7 KRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (110)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 85 (110)
+||++|++++++++++|+.+.+.++ |+++|+++|.||++|+|+||.|++.|.||++||.+||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988765 999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCC-CCCCCcccHHHHHhhhC
Q 036649 86 SICLDILQ-NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 86 ~icl~~l~-~~W~p~~~i~~il~~i~ 110 (110)
.||+++|. ++|+|++++++||.+|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~ 106 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQ 106 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHH
Confidence 99999998 89999999999999874
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-35 Score=184.38 Aligned_cols=108 Identities=36% Similarity=0.736 Sum_probs=101.9
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccC-ccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHP 79 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i-~Hp 79 (110)
|+..|.+||+||+.+++.+++.|+... ..+|+.+|.+-+.|.+||.|+|..|.+.++||+.||++.|+|.|..++ .||
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 345788999999999999999999887 788999999999999999999999999999999999999999999875 799
Q ss_pred cccCCCcEeccCCCCCCCCcccHHHHHhhh
Q 036649 80 NIYADGSICLDILQNQWSPIYDVAAILTSI 109 (110)
Q Consensus 80 nv~~~G~icl~~l~~~W~p~~~i~~il~~i 109 (110)
+|+++|.||+++|.++|+|++++.+|.++|
T Consensus 91 HiYSNGHICL~iL~d~WsPAmsv~SvClSI 120 (161)
T KOG0427|consen 91 HIYSNGHICLDILYDSWSPAMSVQSVCLSI 120 (161)
T ss_pred ceecCCeEEEEeecccCCcchhhHHHHHHH
Confidence 999999999999999999999999998776
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=180.15 Aligned_cols=104 Identities=29% Similarity=0.764 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeE-EeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccC
Q 036649 5 AKKRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 83 (110)
|.+||.||+.++++++...+. +..++.|++.|.+.+. |++-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 579999999999999877544 3457889999999998 79999999999999999999999999999999999999999
Q ss_pred CCcEeccCC-CCCCCCcccHHHHHhhh
Q 036649 84 DGSICLDIL-QNQWSPIYDVAAILTSI 109 (110)
Q Consensus 84 ~G~icl~~l-~~~W~p~~~i~~il~~i 109 (110)
.|.+|+.++ .++|.|++.+++||++|
T Consensus 82 ~gqvClPiis~EnWkP~T~teqVlqaL 108 (153)
T KOG0422|consen 82 KGQVCLPIISAENWKPATRTEQVLQAL 108 (153)
T ss_pred CCceeeeeeecccccCcccHHHHHHHH
Confidence 999999999 58899999999999875
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=180.49 Aligned_cols=107 Identities=36% Similarity=0.736 Sum_probs=97.1
Q ss_pred CC-hHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccc
Q 036649 1 MS-TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (110)
Q Consensus 1 Ms-~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (110)
|+ ..|.|||+|||+.|++++.++|.+.|.++|+.+||.++.||+||||+||.|+.++.||++||++||.|+++|+- .
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--G 78 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--G 78 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--C
Confidence 44 57889999999999999999999999999999999999999999999999999999999999999999999953 2
Q ss_pred cccCCCcEeccCC---CCCCCCcccHHHHHhhh
Q 036649 80 NIYADGSICLDIL---QNQWSPIYDVAAILTSI 109 (110)
Q Consensus 80 nv~~~G~icl~~l---~~~W~p~~~i~~il~~i 109 (110)
.+-.+-++||++. .+.|+|+|++.+||.+|
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILtGL 111 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGL 111 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHHHH
Confidence 3345669999876 48999999999999876
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=175.79 Aligned_cols=105 Identities=30% Similarity=0.715 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEE--eeCCCCcc--eEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISG--APQDNNIM--LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~--~~~~~~~~--~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (110)
+.++-||++|..++.- +++++. ....+++. ++.++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|++||
T Consensus 27 s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 5677889999888864 445553 22344444 4888887 999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 79 pnv~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
||||.+|+|||++|+++|+|+.++.+|+-+++
T Consensus 104 PNId~~GnVCLnILRedW~P~lnL~sIi~GL~ 135 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILREDWRPVLNLNSIIYGLQ 135 (184)
T ss_pred CCcCCcchHHHHHHHhcCccccchHHHHHHHH
Confidence 99999999999999999999999999998764
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-31 Score=173.83 Aligned_cols=103 Identities=35% Similarity=0.808 Sum_probs=94.2
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
||+ ..||+..|...|... +..|...++++.+++|.+.||.+|||+||.+++++.+|++||++.|.|.|.++|||||
T Consensus 1 ms~-~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN 76 (189)
T KOG0416|consen 1 MSS-GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN 76 (189)
T ss_pred CCC-cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence 454 459999999888765 5678888999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCcEeccCCCCCCCCcccHHHHHh
Q 036649 81 IY-ADGSICLDILQNQWSPIYDVAAILT 107 (110)
Q Consensus 81 v~-~~G~icl~~l~~~W~p~~~i~~il~ 107 (110)
|+ .+|.|||+.+++.|+|.+.+..|+.
T Consensus 77 IDe~SGsVCLDViNQtWSp~yDL~NIfe 104 (189)
T KOG0416|consen 77 IDEASGSVCLDVINQTWSPLYDLVNIFE 104 (189)
T ss_pred chhccCccHHHHHhhhhhHHHHHHHHHH
Confidence 99 7999999999999999998877764
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-30 Score=170.22 Aligned_cols=106 Identities=33% Similarity=0.756 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccCC
Q 036649 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 84 (110)
..|.+.+|++.+...++.||.|.+.++|+....+.|.||.||||++|.|+..+.+..|||.+||+-.|+|+||||||-.+
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaN 90 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAAN 90 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 85 GSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 85 G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|.||++.|+.+|+|..+|.+||+.|+
T Consensus 91 GEICVNtLKkDW~p~LGirHvLltik 116 (223)
T KOG0423|consen 91 GEICVNTLKKDWNPSLGIRHVLLTIK 116 (223)
T ss_pred ceehhhhhhcccCcccchhhHhhhhh
Confidence 99999999999999999999998764
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.2e-26 Score=157.71 Aligned_cols=104 Identities=31% Similarity=0.682 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (110)
+.+.|||+||.++++ ++...+...+.++|+++|+++|.||.||-||||+|+.+|.||.+||++||.+..+|+- ..+.
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Ccee
Confidence 578899999999998 7777888899999999999999999999999999999999999999999999999953 3345
Q ss_pred CCCcEeccCC---CCCCCCcccHHHHHhhh
Q 036649 83 ADGSICLDIL---QNQWSPIYDVAAILTSI 109 (110)
Q Consensus 83 ~~G~icl~~l---~~~W~p~~~i~~il~~i 109 (110)
.+-+||+++. .+.|.|+|+|++.|++|
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAl 116 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLAL 116 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHH
Confidence 6778999988 48899999999998875
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.9e-19 Score=122.08 Aligned_cols=103 Identities=26% Similarity=0.497 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCC--CCCEEEEeccCcccccc-C
Q 036649 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN--KPPTVRFVSRMFHPNIY-A 83 (110)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpnv~-~ 83 (110)
-.|++|+..+.+.+.+||+|.|+-.|-+.|.++|++..| .|.||.|+|+|.+|++||. ..|+|.|.+.++||+|. .
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 468999999999999999999999999999999998665 9999999999999999995 37999999999999999 7
Q ss_pred CCcEeccCCCCCCCCcc-cHHHHHhhhC
Q 036649 84 DGSICLDILQNQWSPIY-DVAAILTSIQ 110 (110)
Q Consensus 84 ~G~icl~~l~~~W~p~~-~i~~il~~i~ 110 (110)
++.+|++.....|.-.- .|++||..+|
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylq 128 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQ 128 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHH
Confidence 99999999988898866 5999998775
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.3e-20 Score=146.11 Aligned_cols=104 Identities=37% Similarity=0.741 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc--CccccccCC
Q 036649 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYAD 84 (110)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv~~~ 84 (110)
+..+.|++-+..+.+.|+.|...++.+....+.|.||.||||.+|.|.|.|.||++||..||.++..+. .++||.+.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 445567777788889999999999999999999999999999999999999999999999999999974 689999999
Q ss_pred CcEeccCCC-------CCCCCcccHHHHHhhhC
Q 036649 85 GSICLDILQ-------NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 85 G~icl~~l~-------~~W~p~~~i~~il~~i~ 110 (110)
|+||+++|. +.|+|+-+|.+||.+||
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q 966 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQ 966 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhh
Confidence 999999994 66999999999999987
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.3e-18 Score=134.84 Aligned_cols=107 Identities=36% Similarity=0.790 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc---Ccccc
Q 036649 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR---MFHPN 80 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~---i~Hpn 80 (110)
...+|+++|++-+.++.++|+.+.+.+..+...+++|.||+|+||++|.|.|.|.||..||..||.+.++|. .+.||
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 456899999999999999999999999999999999999999999999999999999999999999999975 68999
Q ss_pred ccCCCcEeccCCC-------CCCCCc-ccHHHHHhhhC
Q 036649 81 IYADGSICLDILQ-------NQWSPI-YDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~ 110 (110)
.+.+|+||+++|. ++|+|. .++.++|.+||
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ 399 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQ 399 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhh
Confidence 9999999999983 679999 78999999987
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-16 Score=101.72 Aligned_cols=107 Identities=22% Similarity=0.529 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhCCCCC-eEEeeCC-CC--cceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccc
Q 036649 4 PAKKRLMRDFKRLQQDPPAG-ISGAPQD-NN--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~-~~~~~~~-~~--~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (110)
+...||.+|+.+-++...+| ++....+ +| +..|...|.||+.|+||+.+|.++|..-++||..||.|+|.+++.-.
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 45689999999988776554 3333322 23 56899999999999999999999999999999999999999999999
Q ss_pred ccc-CCCcEeccCC--CCCCCCcccHHHHHhhhC
Q 036649 80 NIY-ADGSICLDIL--QNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 80 nv~-~~G~icl~~l--~~~W~p~~~i~~il~~i~ 110 (110)
.|+ .+|.+.-..+ -++|+-.++++.+|.+++
T Consensus 85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr 118 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLR 118 (138)
T ss_pred ccccCCCccCccccchhhcccccchhhHHHHhhh
Confidence 998 6777775444 378999999999998875
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.2e-10 Score=70.59 Aligned_cols=57 Identities=28% Similarity=0.640 Sum_probs=47.5
Q ss_pred EEEEEecCCCCCCCCCEEEEeccCcc-ccccCCCcEeccCC-CCCCCCcccHHHHHhhh
Q 036649 53 FKLTLQFTEDYPNKPPTVRFVSRMFH-PNIYADGSICLDIL-QNQWSPIYDVAAILTSI 109 (110)
Q Consensus 53 f~~~i~fp~~YP~~pP~v~f~t~i~H-pnv~~~G~icl~~l-~~~W~p~~~i~~il~~i 109 (110)
.-+.+.|+++||+.||.++...+.-. .-|-.+|+||+.+| .++|+.+++++.++++|
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qi 71 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQI 71 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHH
Confidence 44677899999999999999886543 33457999999999 57899999999999875
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.77 E-value=1.5e-08 Score=65.55 Aligned_cols=61 Identities=33% Similarity=0.718 Sum_probs=53.8
Q ss_pred CCCEEEEEEecCCCCCCCCCEEEEeccC---ccccccCCCcEec---cCCCCCCCCcccHHHHHhhh
Q 036649 49 DGGTFKLTLQFTEDYPNKPPTVRFVSRM---FHPNIYADGSICL---DILQNQWSPIYDVAAILTSI 109 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il~~i 109 (110)
.|+.+.+.|.+|++||..||.|....+. +-|||+.+|.+|+ +..-+.|.|.-++.++|.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a 100 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERA 100 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHH
Confidence 6899999999999999999999988644 6899999999999 77788999998888887653
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.62 E-value=2e-08 Score=64.95 Aligned_cols=95 Identities=22% Similarity=0.381 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCC--------C--EEEEEEecCCCCCCCCCEEEEec-
Q 036649 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDG--------G--TFKLTLQFTEDYPNKPPTVRFVS- 74 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g--------~--~f~~~i~fp~~YP~~pP~v~f~t- 74 (110)
..||.+|+..|.+- ++...++...|.-.=.-++||-|.| . .|.+++.+|..||..||.|....
T Consensus 26 ~~RLKEEy~aLI~Y------v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIKY------VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHHH------HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 57999999998641 1222222233332223334444333 2 45566777999999999998763
Q ss_pred cCccccccCCCcEeccCCC----CCCCCcccHHHHH
Q 036649 75 RMFHPNIYADGSICLDILQ----NQWSPIYDVAAIL 106 (110)
Q Consensus 75 ~i~Hpnv~~~G~icl~~l~----~~W~p~~~i~~il 106 (110)
.--..-.+.+|+||++... ..-.|.++|.+.|
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 2233456789999999885 3347788887765
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.30 E-value=3.3e-06 Score=53.93 Aligned_cols=72 Identities=19% Similarity=0.491 Sum_probs=45.9
Q ss_pred cceEEEEEECCCCCCCCCCEEE--EEEecCCCCCCCCCEEEEeccC-----ccccccCCCcEeccCCCCCCCC-cccHHH
Q 036649 33 IMLWNAVIFGPDDTPWDGGTFK--LTLQFTEDYPNKPPTVRFVSRM-----FHPNIYADGSICLDILQNQWSP-IYDVAA 104 (110)
Q Consensus 33 ~~~w~~~i~gp~~t~y~g~~f~--~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~~ 104 (110)
+....++|. -.|+|..|. +.|-+|++||.+||.+...-.. -+.+|+.+|+|.+..| ++|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 444555553 257888775 6666899999999999775211 2449999999988877 57988 667888
Q ss_pred HHhhh
Q 036649 105 ILTSI 109 (110)
Q Consensus 105 il~~i 109 (110)
++..+
T Consensus 107 lv~~l 111 (121)
T PF05743_consen 107 LVQEL 111 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.9e-05 Score=50.71 Aligned_cols=95 Identities=21% Similarity=0.416 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCC----------EEEEEEecCCCCCCCCCEEEEecc
Q 036649 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~----------~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
..||.+|++.+.+- ++-..++-..|.-.-..++||-|-|. .|.+++.+|-.||..+|.+....-
T Consensus 29 vqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 47999999998642 23334445556544455677777663 455666779999999999976531
Q ss_pred -CccccccCCCcEeccCCC-CCC---CCcccHHHHH
Q 036649 76 -MFHPNIYADGSICLDILQ-NQW---SPIYDVAAIL 106 (110)
Q Consensus 76 -i~Hpnv~~~G~icl~~l~-~~W---~p~~~i~~il 106 (110)
--.-..+.+|.||+.-.. .-| .|.++|.+.+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 122345679999987664 335 5566666543
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.16 E-value=0.0019 Score=39.72 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEEC--CCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccC
Q 036649 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFG--PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM 76 (110)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i 76 (110)
.+...|+..|+.-=+... ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456778888875333222 22234445556666622 2233444568999999999999999999887644
No 31
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.0029 Score=46.73 Aligned_cols=72 Identities=21% Similarity=0.540 Sum_probs=50.4
Q ss_pred CcceEEEEEECCCCCCCCCCEEEEEE--ecCCCCCCCCCEEEEe-cc----CccccccCCCcEeccCCCCCCCCcc-cHH
Q 036649 32 NIMLWNAVIFGPDDTPWDGGTFKLTL--QFTEDYPNKPPTVRFV-SR----MFHPNIYADGSICLDILQNQWSPIY-DVA 103 (110)
Q Consensus 32 ~~~~w~~~i~gp~~t~y~g~~f~~~i--~fp~~YP~~pP~v~f~-t~----i~Hpnv~~~G~icl~~l~~~W~p~~-~i~ 103 (110)
++++..++| -.+|.|..|-+=| =+.+.||..||.+... |. -.|-+|+.+|.|.|..|. +|.+.- ++.
T Consensus 51 ~ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCcc----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 344444444 3478887776544 4699999999998654 21 138999999999999994 687754 466
Q ss_pred HHHhh
Q 036649 104 AILTS 108 (110)
Q Consensus 104 ~il~~ 108 (110)
.+++.
T Consensus 126 ~Liq~ 130 (365)
T KOG2391|consen 126 GLIQE 130 (365)
T ss_pred HHHHH
Confidence 66543
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.80 E-value=0.014 Score=35.45 Aligned_cols=27 Identities=19% Similarity=0.576 Sum_probs=22.9
Q ss_pred CCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 49 DGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
..-.+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999988764
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.32 E-value=0.043 Score=35.10 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=40.0
Q ss_pred CeEEeeCCCCcceEEEEEEC--CCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 23 GISGAPQDNNIMLWNAVIFG--PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 23 ~~~~~~~~~~~~~w~~~i~g--p~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
|+..+...+.-.+|.+ |.| -+.+.|....-.+-|.+|.+||..+|.+.+..+
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P 66 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP 66 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence 6777766666667765 555 345579999999999999999999987766654
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.71 E-value=0.098 Score=35.04 Aligned_cols=55 Identities=24% Similarity=0.474 Sum_probs=43.6
Q ss_pred EEEecCCCCCCCCCEEEEeccCc---cccccCC-----CcEeccCCC-CCCCCcccHHHHHhhh
Q 036649 55 LTLQFTEDYPNKPPTVRFVSRMF---HPNIYAD-----GSICLDILQ-NQWSPIYDVAAILTSI 109 (110)
Q Consensus 55 ~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~i~~il~~i 109 (110)
+.|.|+.+||..+|.|.+..+.| +||++.. ..+|+..-. ..|.+..+++.+|..|
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl 120 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRL 120 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHH
Confidence 56889999999999888876543 5778765 679986553 5699999999998766
No 35
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.91 E-value=0.84 Score=31.88 Aligned_cols=63 Identities=17% Similarity=0.334 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCC--CCCCCEEEEEEecCCCCCCCCCEEEEe
Q 036649 9 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDT--PWDGGTFKLTLQFTEDYPNKPPTVRFV 73 (110)
Q Consensus 9 l~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t--~y~g~~f~~~i~fp~~YP~~pP~v~f~ 73 (110)
...|+..|..--+.-+. ...+.+...+.+.|.--.+. -+.| .+.+.+.++++||..+|-+.+.
T Consensus 7 Qe~E~EaLeSIY~de~~-~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFK-HINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHhccchhh-hhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 44566666543222221 11233333355566432222 1222 7889999999999999999443
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.71 E-value=1.2 Score=36.84 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCC-CCEEEEecc
Q 036649 8 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK-PPTVRFVSR 75 (110)
Q Consensus 8 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~-pP~v~f~t~ 75 (110)
-|.+|+.-|-. +-+.+.++..+-.-....+.+.+|-.-.-.....++.|.||.+||.+ +|.+.|..+
T Consensus 424 nLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 35556555532 22334444333344566777877654332234557889999999986 799999753
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=85.01 E-value=3.4 Score=30.22 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEE
Q 036649 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTV 70 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v 70 (110)
..+|.+|+.++..+.. +++ ..++++....+.+. +. .....++|.++.+||.++|.+
T Consensus 101 ys~ll~EIe~IGW~kl--~~i-~~d~~ls~i~l~~~--D~----~R~H~l~l~l~~~yp~~~p~~ 156 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQI-QFDDDLSTIKLKIF--DS----SRQHYLELKLPSNYPFEPPSC 156 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEE-EE-CCCSEEEEEEE--TT----CEEEEEEEETTTTTTTSEEEE
T ss_pred HHHHHHHHHHhccccc--eEE-ecCCCccEEEEEEE--cC----CceEEEEEEECCCCCCCCcee
Confidence 3578888888876543 222 13677888877775 32 267889999999999999975
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=80.84 E-value=8.5 Score=28.79 Aligned_cols=66 Identities=23% Similarity=0.460 Sum_probs=45.7
Q ss_pred CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEe-ccCccccccCCCcEeccCCCCCCCCcc--cHHHHHhh
Q 036649 32 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIYADGSICLDILQNQWSPIY--DVAAILTS 108 (110)
Q Consensus 32 ~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~-t~i~Hpnv~~~G~icl~~l~~~W~p~~--~i~~il~~ 108 (110)
...++.+.| ||.|...+-+|.|...||..||-+.|- ..-|+|.... + .. -.+|++.- .+..++..
T Consensus 52 ~~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~---l--~~-L~~Wd~~dp~~Ll~li~E 119 (333)
T PF06113_consen 52 NCDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK---L--PS-LVNWDPSDPNCLLNLISE 119 (333)
T ss_pred ccceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh---c--ch-hhcCCCCCchHHHHHHHH
Confidence 355677777 799999999999999999999999996 4457874321 1 11 24687754 35455544
Q ss_pred h
Q 036649 109 I 109 (110)
Q Consensus 109 i 109 (110)
+
T Consensus 120 L 120 (333)
T PF06113_consen 120 L 120 (333)
T ss_pred H
Confidence 3
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=79.89 E-value=3.4 Score=26.92 Aligned_cols=25 Identities=24% Similarity=0.671 Sum_probs=22.7
Q ss_pred CCCEEEEEEecCCCCC-CCCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYP-NKPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP-~~pP~v~f~ 73 (110)
+.|.|.|.-.+|-.|| ..||.|+|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3589999999999999 999999987
No 40
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=78.87 E-value=3.7 Score=28.11 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCCEEEEEEecCCCCCCCCCEEEEec
Q 036649 49 DGGTFKLTLQFTEDYPNKPPTVRFVS 74 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP~~pP~v~f~t 74 (110)
+.|.|.|+=.+|--||.++|.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35899999999999999999999873
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=75.08 E-value=3.9 Score=21.21 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhCC
Q 036649 5 AKKRLMRDFKRLQQDP 20 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~ 20 (110)
..+||++|++++....
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4689999999998653
No 42
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=73.23 E-value=6.7 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCCCC-----CCCCEEEEec
Q 036649 50 GGTFKLTLQFTEDYP-----NKPPTVRFVS 74 (110)
Q Consensus 50 g~~f~~~i~fp~~YP-----~~pP~v~f~t 74 (110)
.|.|.|+-.+|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 489999999999999 8999999873
No 43
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=72.36 E-value=1.8 Score=29.18 Aligned_cols=19 Identities=32% Similarity=0.802 Sum_probs=14.3
Q ss_pred ccCcc---ccccCCCcEeccCC
Q 036649 74 SRMFH---PNIYADGSICLDIL 92 (110)
Q Consensus 74 t~i~H---pnv~~~G~icl~~l 92 (110)
|+.|| +||+.+|+||+...
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNN 111 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCC
Confidence 44555 69999999998653
No 44
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=67.78 E-value=11 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=23.4
Q ss_pred CCCCcceEEEEEECCCCCCCC-CCEEEEEEecC
Q 036649 29 QDNNIMLWNAVIFGPDDTPWD-GGTFKLTLQFT 60 (110)
Q Consensus 29 ~~~~~~~w~~~i~gp~~t~y~-g~~f~~~i~fp 60 (110)
..+|...|.|++.|++||+.. +..|-+.+.|.
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF~ 75 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIFY 75 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeHH
Confidence 567778899999999998874 45555555553
No 45
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=65.47 E-value=11 Score=25.92 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=22.0
Q ss_pred CCCEEEEEEecCCCCCC-----CCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYPN-----KPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP~-----~pP~v~f~ 73 (110)
+.|.|.|+-..|-.||. .||.|+|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34889999999999998 89999886
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=64.27 E-value=28 Score=20.62 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=27.3
Q ss_pred ceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCc
Q 036649 34 MLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (110)
Q Consensus 34 ~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (110)
.+|.+.+.|+.+.--..-+=++.+.+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999988754445566788888888886 5554555543
No 47
>PHA03200 uracil DNA glycosylase; Provisional
Probab=64.14 E-value=7.2 Score=28.08 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=23.9
Q ss_pred CcceEEEEEECCCCCCCCCCEE-EEEEecCCCCCCCCCEEE
Q 036649 32 NIMLWNAVIFGPDDTPWDGGTF-KLTLQFTEDYPNKPPTVR 71 (110)
Q Consensus 32 ~~~~w~~~i~gp~~t~y~g~~f-~~~i~fp~~YP~~pP~v~ 71 (110)
.+.+-+|+|.|.+ ||.||.= -+.+..+++++. ||..+
T Consensus 81 p~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~ 118 (255)
T PHA03200 81 SPEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLK 118 (255)
T ss_pred ChhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHH
Confidence 3456799999966 8876432 244456777764 77654
No 48
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=62.15 E-value=14 Score=25.23 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCCCCC-----CCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYPN-----KPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP~-----~pP~v~f~ 73 (110)
.|.|.|.-.+|--||. .||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 89999886
No 49
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=56.37 E-value=6 Score=28.02 Aligned_cols=19 Identities=21% Similarity=0.719 Sum_probs=14.0
Q ss_pred ccCcc---ccccCCCcEeccCC
Q 036649 74 SRMFH---PNIYADGSICLDIL 92 (110)
Q Consensus 74 t~i~H---pnv~~~G~icl~~l 92 (110)
|+.|| .||+.+|+||+.-.
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~ 152 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNA 152 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCC
Confidence 34555 58999999998654
No 50
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=56.37 E-value=33 Score=24.75 Aligned_cols=47 Identities=26% Similarity=0.492 Sum_probs=30.7
Q ss_pred CcceEEEEEECCCCCCCCC---CEEEEEEecC-----CCCCCCCCEEEEeccCcc
Q 036649 32 NIMLWNAVIFGPDDTPWDG---GTFKLTLQFT-----EDYPNKPPTVRFVSRMFH 78 (110)
Q Consensus 32 ~~~~w~~~i~gp~~t~y~g---~~f~~~i~fp-----~~YP~~pP~v~f~t~i~H 78 (110)
|..-|++....-+...-.| ..|+.++.+. .|-||+||+|..+++-|.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 3344666666444333333 4566666664 678999999999987653
No 51
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.33 E-value=21 Score=24.96 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=23.0
Q ss_pred CcceEEEEEECCCCCCCCC--CEEEEEEecCCCCCCCCCEEE
Q 036649 32 NIMLWNAVIFGPDDTPWDG--GTFKLTLQFTEDYPNKPPTVR 71 (110)
Q Consensus 32 ~~~~w~~~i~gp~~t~y~g--~~f~~~i~fp~~YP~~pP~v~ 71 (110)
.+.+.+|+|.|-+ ||.+ ----+.+..+++.+. ||.++
T Consensus 49 p~~~vKVVIlGQD--PYh~~gqA~GLaFSv~~~~~~-PpSL~ 87 (212)
T TIGR00628 49 PPEDVKVVILGQD--PYHGPGQAHGLAFSVKPGVPI-PPSLK 87 (212)
T ss_pred ChhheEEEEecCC--CCCCCCCcceeeeECCCCCCC-CchHH
Confidence 4567899999966 7865 223334445666653 66654
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=55.42 E-value=19 Score=26.85 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.0
Q ss_pred CEEEEEEecCCCCCCCCCEEEEecc
Q 036649 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 51 ~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
-.+.+.+..++.||...|+|....+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5677888999999999999999865
No 53
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=49.03 E-value=29 Score=25.42 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|+=..|.-|| ..||.|+|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 489999999999997 679999986
No 54
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=46.97 E-value=34 Score=24.07 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCCCCC-------CCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYPN-------KPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP~-------~pP~v~f~ 73 (110)
.|.|.|.=..|--||. .||.|+|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5899999999999975 79999985
No 55
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=46.97 E-value=33 Score=25.04 Aligned_cols=24 Identities=21% Similarity=0.584 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|.=..|.-|| ..||.|+|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 589999999999999 479999986
No 56
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=46.90 E-value=36 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCCCCCCCEEEEec
Q 036649 51 GTFKLTLQFTEDYPNKPPTVRFVS 74 (110)
Q Consensus 51 ~~f~~~i~fp~~YP~~pP~v~f~t 74 (110)
-.|-+.|.+|..||...|.++|++
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 357788889999999999999886
No 57
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.79 E-value=49 Score=22.78 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCC
Q 036649 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDT 46 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t 46 (110)
..+|+++|++.+.++-...++.-|.-+....+.+.+..-.++
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT 161 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc
Confidence 468999999999999888888888766667777777654443
No 58
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=44.95 E-value=38 Score=23.83 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCCCCC-------CCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYPN-------KPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP~-------~pP~v~f~ 73 (110)
.|.|.|.=..|--||. .||.|+|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5899999999999986 89999985
No 59
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=44.20 E-value=40 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.7
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|.=..|..|| ..||.|+|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 589999999998887 578999986
No 60
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=44.20 E-value=17 Score=24.47 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=42.7
Q ss_pred HHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEE--EEEecCCCCCCCCCEEEEe---ccCccccccC
Q 036649 9 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFK--LTLQFTEDYPNKPPTVRFV---SRMFHPNIYA 83 (110)
Q Consensus 9 l~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~--~~i~fp~~YP~~pP~v~f~---t~i~Hpnv~~ 83 (110)
+..++++.+..-..|++|....++ +.+ .|-+-. .++. .+||.|.+. +.--|+-+..
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS------ldPPlvlv~l~~~s~~~~~i~~ 66 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT------DTPPSVMVCINANSAMNPVFQG 66 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE------cCCCEEEEEECCCCchhHHHHh
Confidence 456788888888889987643211 111 111111 1222 368998876 3456888889
Q ss_pred CCcEeccCCCC
Q 036649 84 DGSICLDILQN 94 (110)
Q Consensus 84 ~G~icl~~l~~ 94 (110)
+|.+|+++|.+
T Consensus 67 sg~F~VnvL~~ 77 (170)
T PRK15486 67 NGKLCINVLNH 77 (170)
T ss_pred CCeEEEEEChh
Confidence 99999999964
No 61
>PHA03199 uracil DNA glycosylase; Provisional
Probab=43.85 E-value=36 Score=25.23 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=20.8
Q ss_pred cceEEEEEECCCCCCCCC--CEEEEEEecCCCCCCCCCEEE
Q 036649 33 IMLWNAVIFGPDDTPWDG--GTFKLTLQFTEDYPNKPPTVR 71 (110)
Q Consensus 33 ~~~w~~~i~gp~~t~y~g--~~f~~~i~fp~~YP~~pP~v~ 71 (110)
+.+-+|+|.|.+ ||.| ----+.+..+++.+. ||..+
T Consensus 137 ~~~VKVVILGQD--PYh~~gqA~GLaFSV~~gv~i-PPSL~ 174 (304)
T PHA03199 137 PEKIRVVIIGQD--PYHGAGHAHGLAFSVKRGIPI-PPSLK 174 (304)
T ss_pred HHHcEEEEEecC--CCCCCCccceEEEecCCCCCC-CccHH
Confidence 445689999966 8865 222233345555543 66544
No 62
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=43.38 E-value=47 Score=24.10 Aligned_cols=29 Identities=14% Similarity=0.480 Sum_probs=25.8
Q ss_pred CCCCCCEEEEEEecCCCCCCCC--CEEEEec
Q 036649 46 TPWDGGTFKLTLQFTEDYPNKP--PTVRFVS 74 (110)
Q Consensus 46 t~y~g~~f~~~i~fp~~YP~~p--P~v~f~t 74 (110)
+.+.|..|++.+..|.+||-.. |.|.|+.
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 4678999999999999999887 9999885
No 63
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=43.12 E-value=41 Score=24.62 Aligned_cols=24 Identities=21% Similarity=0.628 Sum_probs=20.9
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|+=..|--|| ..||.|+|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 489999999999997 578999986
No 64
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=42.65 E-value=21 Score=19.91 Aligned_cols=13 Identities=15% Similarity=0.577 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhh
Q 036649 6 KKRLMRDFKRLQQ 18 (110)
Q Consensus 6 ~~Rl~~E~~~l~~ 18 (110)
.+||.+||.++--
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 5799999998853
No 65
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=42.22 E-value=77 Score=19.09 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.0
Q ss_pred CCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 48 WDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 48 y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
-||..+.|.-.-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888777789999 488888854
No 66
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=40.58 E-value=50 Score=23.66 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=21.0
Q ss_pred CCCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
+.|.|.|+=..|.-|| ..||.|+|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 3589999999999997 468999986
No 67
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=40.39 E-value=18 Score=23.75 Aligned_cols=30 Identities=27% Similarity=0.722 Sum_probs=24.0
Q ss_pred CCCCEEEEe---ccCccccccCCCcEeccCCCC
Q 036649 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQN 94 (110)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~ 94 (110)
.+||.|.+. ..--|+.+..+|.+|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 578998875 345688889999999999964
No 68
>PRK11700 hypothetical protein; Provisional
Probab=40.06 E-value=1.2e+02 Score=20.85 Aligned_cols=70 Identities=20% Similarity=0.396 Sum_probs=42.6
Q ss_pred cceEEEE---EECCCCCCC-CCCEEEEEEecC--------------CCCCCCCCEEEEec--------cCcccccc-CCC
Q 036649 33 IMLWNAV---IFGPDDTPW-DGGTFKLTLQFT--------------EDYPNKPPTVRFVS--------RMFHPNIY-ADG 85 (110)
Q Consensus 33 ~~~w~~~---i~gp~~t~y-~g~~f~~~i~fp--------------~~YP~~pP~v~f~t--------~i~Hpnv~-~~G 85 (110)
...|.+. +.-|.+.-| .-|.=|+++++| ++.+..++-|++.. +.-+|-|- ++|
T Consensus 88 ~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~ 167 (187)
T PRK11700 88 VGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDG 167 (187)
T ss_pred eCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeC
Confidence 4456543 333544444 456777888887 23444555555543 35677775 799
Q ss_pred cEeccCCCCCCCCcccHHHHHhh
Q 036649 86 SICLDILQNQWSPIYDVAAILTS 108 (110)
Q Consensus 86 ~icl~~l~~~W~p~~~i~~il~~ 108 (110)
.+|+.+. .++|++|+.+
T Consensus 168 ~vcIK~H------P~slk~IV~S 184 (187)
T PRK11700 168 GICIKFH------PHSIKEIVAS 184 (187)
T ss_pred CEEEEEc------CccHHHHHHh
Confidence 9999876 4667777654
No 69
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=38.13 E-value=1e+02 Score=21.59 Aligned_cols=71 Identities=14% Similarity=0.321 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCC-------------------CC
Q 036649 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTED-------------------YP 64 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~-------------------YP 64 (110)
++..||.+.++++++.. .+...-|.+.+....+.-|. | |.+.+.|.++ |-
T Consensus 9 s~~eR~~e~~~~~k~~L---------~~a~~GW~~~yyp~~~~~~G-G-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~ 77 (235)
T PF14135_consen 9 SPAERINEALAEYKKIL---------TSAPNGWKLEYYPKTDQSYG-G-YTFLMKFDDDGKVTMASDFDSASTPSTSSYR 77 (235)
T ss_pred CHHHHHHHHHHHHHHHH---------hcCCCceEEEEECCCCccCC-c-EEEEEEECCCCeEEEEEccCCCCceeeEEEE
Confidence 35578888777777531 22233466666532222232 2 5555555433 22
Q ss_pred C---CCCEEEEec--cCccccccCCC
Q 036649 65 N---KPPTVRFVS--RMFHPNIYADG 85 (110)
Q Consensus 65 ~---~pP~v~f~t--~i~Hpnv~~~G 85 (110)
. .-|.+.|.| ++.|-..++++
T Consensus 78 ~~~~~gp~LsFdTyN~~iH~~s~p~~ 103 (235)
T PF14135_consen 78 LKQDQGPVLSFDTYNEYIHYFSDPSN 103 (235)
T ss_pred EecCCceEEEEEeCCceEEEccCCCc
Confidence 2 237788876 36776555433
No 70
>PHA03201 uracil DNA glycosylase; Provisional
Probab=37.87 E-value=45 Score=24.91 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=21.1
Q ss_pred cceEEEEEECCCCCCCCC--CEEEEEEecCCCCCCCCCEEE
Q 036649 33 IMLWNAVIFGPDDTPWDG--GTFKLTLQFTEDYPNKPPTVR 71 (110)
Q Consensus 33 ~~~w~~~i~gp~~t~y~g--~~f~~~i~fp~~YP~~pP~v~ 71 (110)
+.+.+|+|.|.+ ||.| ----+-+..+++.+. ||.++
T Consensus 151 ~~~VKVVILGQD--PYh~pgqA~GLaFSV~~gv~~-PpSLr 188 (318)
T PHA03201 151 PDEVRVVIIGQD--PYHQPGQAHGLAFSVRPGTPA-PPSLR 188 (318)
T ss_pred HhHcEEEEEecC--CCCCCCCcceEeeecCCCCCC-ChhHH
Confidence 456799999966 8854 333334445555543 56554
No 71
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=37.39 E-value=22 Score=23.38 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=41.2
Q ss_pred HHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEe---ccCccccccCCCcE
Q 036649 11 RDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV---SRMFHPNIYADGSI 87 (110)
Q Consensus 11 ~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~---t~i~Hpnv~~~G~i 87 (110)
+++++.+..-+.|+.+....+ ++.+ .|-+ +.-=..--.+||.+.+. +.--|+.+..+|.+
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~------------~~~~-~g~t----vss~~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDG------------PAGR-AGFT----ASAVCSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeec------------CCCc-eeEE----EEeEeeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 467788888788887654221 1111 1211 11111134579998886 34567888999999
Q ss_pred eccCCCC
Q 036649 88 CLDILQN 94 (110)
Q Consensus 88 cl~~l~~ 94 (110)
++++|.+
T Consensus 67 ~VnvL~~ 73 (156)
T TIGR03615 67 CVNTLAA 73 (156)
T ss_pred EEEECcH
Confidence 9999964
No 72
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.10 E-value=11 Score=26.10 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.2
Q ss_pred CCCcEeccCCCCCCCCcccHHHHHh
Q 036649 83 ADGSICLDILQNQWSPIYDVAAILT 107 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~ 107 (110)
..+..|.+++..-|+|.+|++..+.
T Consensus 134 y~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 134 YGSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred chhhhhHHHHHhhhCCCCCHHHHHH
Confidence 3567999999999999999987754
No 73
>PHA03204 uracil DNA glycosylase; Provisional
Probab=36.85 E-value=55 Score=24.49 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=19.9
Q ss_pred cceEEEEEECCCCCCCCC--CEEEEEEecCCCCCCCCCEEE
Q 036649 33 IMLWNAVIFGPDDTPWDG--GTFKLTLQFTEDYPNKPPTVR 71 (110)
Q Consensus 33 ~~~w~~~i~gp~~t~y~g--~~f~~~i~fp~~YP~~pP~v~ 71 (110)
+.+-+|+|.|.+ ||.| ----+.+..+++.+. ||..+
T Consensus 151 ~~~VKVVILGQD--PYh~pgqA~GLaFSV~~gv~i-PpSLr 188 (322)
T PHA03204 151 PDHVKVVIVGQD--PYANPGQAHGLAFSVKPGSPI-PPSLK 188 (322)
T ss_pred hhHeEEEEEecC--CCCCCCccceEEEEcCCCCCC-CccHH
Confidence 445689999966 8865 122233334555442 55543
No 74
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=36.71 E-value=28 Score=23.16 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=23.6
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.+. ..--++++..+|..+++++.++
T Consensus 45 ~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~~ 77 (176)
T COG1853 45 EPPLVLVCVNKSSDTWPNIEETGEFVVNVLSED 77 (176)
T ss_pred CCCEEEEEecCCcchhhhhhhcCEEEEEeCCHH
Confidence 67888776 3456789999999999999654
No 75
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=35.21 E-value=26 Score=19.39 Aligned_cols=14 Identities=21% Similarity=0.814 Sum_probs=8.7
Q ss_pred CCCCcccHHHHHhh
Q 036649 95 QWSPIYDVAAILTS 108 (110)
Q Consensus 95 ~W~p~~~i~~il~~ 108 (110)
+|.|.++|++++..
T Consensus 37 gW~p~~~L~~~i~~ 50 (62)
T PF13950_consen 37 GWKPKYSLEDMIRD 50 (62)
T ss_dssp ----SSSHHHHHHH
T ss_pred CCCcCCCHHHHHHH
Confidence 59999999999864
No 76
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=35.03 E-value=43 Score=27.03 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=23.5
Q ss_pred CCCCCCEEEEEEecCCCCCCC---CCEEEEecc
Q 036649 46 TPWDGGTFKLTLQFTEDYPNK---PPTVRFVSR 75 (110)
Q Consensus 46 t~y~g~~f~~~i~fp~~YP~~---pP~v~f~t~ 75 (110)
+||.=|.|.+- .+|++||+. -|.+.|+|+
T Consensus 248 GpY~WgryDll-vlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDLL-VLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceEE-EecCCCCcccccCcceeeecc
Confidence 36777888875 589999975 699999986
No 77
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=34.42 E-value=18 Score=17.98 Aligned_cols=15 Identities=33% Similarity=1.077 Sum_probs=11.2
Q ss_pred CccccccCCCc-Eecc
Q 036649 76 MFHPNIYADGS-ICLD 90 (110)
Q Consensus 76 i~Hpnv~~~G~-icl~ 90 (110)
-|||.+..+|+ .|-.
T Consensus 7 ~yHP~~~~~G~W~CC~ 22 (36)
T smart00107 7 KYHPSFWVDGKWLCCQ 22 (36)
T ss_pred ccCCCceeCCeEccCC
Confidence 48999998777 5543
No 78
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=34.26 E-value=15 Score=17.83 Aligned_cols=15 Identities=27% Similarity=0.899 Sum_probs=9.3
Q ss_pred CccccccCCCc-Eecc
Q 036649 76 MFHPNIYADGS-ICLD 90 (110)
Q Consensus 76 i~Hpnv~~~G~-icl~ 90 (110)
-|||.+..+|+ .|-.
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999998776 5544
No 79
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=34.09 E-value=72 Score=23.03 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=20.3
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|.=..|.-|| ..||.|+|.
T Consensus 156 ~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 156 DGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 489999999999886 578999886
No 80
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=33.50 E-value=22 Score=23.28 Aligned_cols=18 Identities=22% Similarity=0.576 Sum_probs=13.2
Q ss_pred EEEEEEecCCCCCCCCCE
Q 036649 52 TFKLTLQFTEDYPNKPPT 69 (110)
Q Consensus 52 ~f~~~i~fp~~YP~~pP~ 69 (110)
.|+-+-.+|.|||+.+|-
T Consensus 103 ~YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 103 EYRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHHhcCCCCCCCccchH
Confidence 344556789999998874
No 81
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=33.38 E-value=20 Score=22.51 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=15.6
Q ss_pred CCCcEeccCCCCCCCCcccH
Q 036649 83 ADGSICLDILQNQWSPIYDV 102 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i 102 (110)
..|.+|.-.+.++|+|.+++
T Consensus 49 GGg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CCceEEEEEcCCCCCCCCEE
Confidence 45567888888999998764
No 82
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=31.65 E-value=36 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=16.4
Q ss_pred CCCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
+.|.|.|+=..|--|| ..||.|+|.
T Consensus 82 ~~G~y~f~Ti~Pg~Y~~~~dG~~g~ll~~~g~~~~Rp~HIH~~ 124 (183)
T PF00775_consen 82 ADGRYSFRTIKPGPYPIPDDGPVGFLLRALGRHPWRPAHIHFK 124 (183)
T ss_dssp TTSEEEEEEE----EEESTTSHHHHHHHHTTTTEEE-SEEEEE
T ss_pred CCCEEEEEeeCCCCCCCCCccHHHHHHhhhccCCCcCCeEEEE
Confidence 3589999999999998 568999886
No 83
>PRK05254 uracil-DNA glycosylase; Provisional
Probab=31.33 E-value=82 Score=22.23 Aligned_cols=37 Identities=30% Similarity=0.572 Sum_probs=21.4
Q ss_pred CcceEEEEEECCCCCCCCC--CEEEEEEecCCCCCCCCCEEE
Q 036649 32 NIMLWNAVIFGPDDTPWDG--GTFKLTLQFTEDYPNKPPTVR 71 (110)
Q Consensus 32 ~~~~w~~~i~gp~~t~y~g--~~f~~~i~fp~~YP~~pP~v~ 71 (110)
.+.+.+|+|.|-+ ||.+ ----+-+..+++.+. ||..+
T Consensus 55 p~~~vKVVIlGQD--PY~~~gqA~GLaFSv~~~~~~-PpSL~ 93 (224)
T PRK05254 55 PFDDVKVVILGQD--PYHGPGQAHGLSFSVPPGVPI-PPSLR 93 (224)
T ss_pred CHhHeEEEEEecC--CCCCCCCcceEeeeCCCCCCC-CccHH
Confidence 4566799999966 7765 122233344555442 66654
No 84
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=30.72 E-value=17 Score=30.50 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=0.0
Q ss_pred CEEEEEEecCCCCCCCCCEEEEecc
Q 036649 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 51 ~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
..=-++|.+|.+||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 3445788999999999999877543
No 85
>PHA03347 uracil DNA glycosylase; Provisional
Probab=30.54 E-value=49 Score=23.85 Aligned_cols=37 Identities=32% Similarity=0.664 Sum_probs=24.8
Q ss_pred CcceEEEEEECCCCCCCCCCEE-EEEEecCCCCCCCCCEEE
Q 036649 32 NIMLWNAVIFGPDDTPWDGGTF-KLTLQFTEDYPNKPPTVR 71 (110)
Q Consensus 32 ~~~~w~~~i~gp~~t~y~g~~f-~~~i~fp~~YP~~pP~v~ 71 (110)
.+.+-+|+|.|-+ ||.||.= -+.+..+++.+. ||..+
T Consensus 75 p~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~ 112 (252)
T PHA03347 75 DPEDIKVVILGQD--PYHGGQANGLAFSVAYGFPV-PPSLR 112 (252)
T ss_pred ChhHcEEEEEecC--CCCCCccceEEEecCCCCCC-CccHH
Confidence 4566799999966 8877433 245556777664 77654
No 86
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=29.57 E-value=94 Score=22.32 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=20.5
Q ss_pred CCCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
+.|.|.|+=..|--|| ..||.|+|.
T Consensus 150 ~~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 192 (247)
T cd03462 150 EDGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFK 192 (247)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 3588999999998885 478999986
No 87
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=29.32 E-value=88 Score=17.21 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=11.8
Q ss_pred EEEEEEecCCCCCCCCCEEEEe
Q 036649 52 TFKLTLQFTEDYPNKPPTVRFV 73 (110)
Q Consensus 52 ~f~~~i~fp~~YP~~pP~v~f~ 73 (110)
.+...|.|+..|.. ||+|.+-
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEE
Confidence 35678999998886 8888654
No 88
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=28.57 E-value=1.4e+02 Score=18.61 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCC
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDT 46 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t 46 (110)
|.+.+|+.++++.+.+...+ +.|.|++||
T Consensus 4 S~~~~~l~~~l~~~a~~~~p---------------vli~GE~Gt 32 (138)
T PF14532_consen 4 SPAMRRLRRQLERLAKSSSP---------------VLITGEPGT 32 (138)
T ss_dssp CHHHHHHHHHHHHHHCSSS----------------EEEECCTTS
T ss_pred CHHHHHHHHHHHHHhCCCCc---------------EEEEcCCCC
Confidence 56789999999999754322 356777776
No 89
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=28.53 E-value=64 Score=16.51 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhhC
Q 036649 3 TPAKKRLMRDFKRLQQD 19 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~ 19 (110)
+.+.|-|.+|+..+-++
T Consensus 26 ~~alkELIeELvNITqn 42 (43)
T PF03487_consen 26 STALKELIEELVNITQN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhhccC
Confidence 46788899999888765
No 90
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=28.20 E-value=78 Score=20.16 Aligned_cols=21 Identities=38% Similarity=0.776 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHhhCCCCC
Q 036649 3 TPAKKRLMRDFKRLQQDPPAG 23 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~ 23 (110)
.....||++|++..+.++..|
T Consensus 26 ~krr~rLl~Ef~rR~GDpn~G 46 (118)
T PF09929_consen 26 KKRRSRLLREFQRRSGDPNVG 46 (118)
T ss_pred HHHHHHHHHHHHHhcCCCCCC
Confidence 456789999999998876554
No 91
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=26.95 E-value=2.3e+02 Score=21.34 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=19.0
Q ss_pred CCCCCCCCEEEEeccCccccccCC
Q 036649 61 EDYPNKPPTVRFVSRMFHPNIYAD 84 (110)
Q Consensus 61 ~~YP~~pP~v~f~t~i~Hpnv~~~ 84 (110)
++=+...|+|.|.-.+|||||-..
T Consensus 303 dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred CCCcccCceEEEEEeccCcccccc
Confidence 444456799999999999999753
No 92
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=25.12 E-value=2.1e+02 Score=18.80 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=34.9
Q ss_pred CeEEeeCCCCcceEEEEEECCC-CCCCCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 23 GISGAPQDNNIMLWNAVIFGPD-DTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 23 ~~~~~~~~~~~~~w~~~i~gp~-~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
|..+..-++|...+ ....|. -+.|.|-.-.+.+.=...||--+|++.|.|+
T Consensus 86 g~iLA~ye~n~rDf--LfP~p~~~~~~~g~~revLM~~t~~FpGIaPklEfST~ 137 (140)
T PF14909_consen 86 GEILAYYEENTRDF--LFPEPKLTPSYPGVDREVLMKRTSGFPGIAPKLEFSTK 137 (140)
T ss_pred CcEEEEEeccccce--EcCCCCCCCCCCCCCEEEEeeccCCCCCCCceEEEEEE
Confidence 44444445555544 344343 2357788888888889999988999999875
No 93
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=24.39 E-value=1.6e+02 Score=22.21 Aligned_cols=40 Identities=23% Similarity=0.495 Sum_probs=26.8
Q ss_pred ceEEEEEECCCCC-CCCCCEEEEEEec--CCCCCCCCCEEEEe
Q 036649 34 MLWNAVIFGPDDT-PWDGGTFKLTLQF--TEDYPNKPPTVRFV 73 (110)
Q Consensus 34 ~~w~~~i~gp~~t-~y~g~~f~~~i~f--p~~YP~~pP~v~f~ 73 (110)
.+|+..+.|-.++ -|++|.+++++.= =++-=.+.|+|||=
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG 239 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG 239 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEee
Confidence 3688899995554 7889988876541 12223457899985
No 94
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=24.20 E-value=53 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEe
Q 036649 6 KKRLMRDFKRLQQDPPAGISGA 27 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~ 27 (110)
-++|++|++++..+.+.+..+-
T Consensus 34 P~~L~~em~~V~~~L~~~~~lp 55 (361)
T PF12259_consen 34 PKQLLDEMKNVSSHLPRDWSLP 55 (361)
T ss_pred HHHHHHHHHHHHhcCCcccccC
Confidence 3789999999987666555443
No 95
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=24.17 E-value=76 Score=19.08 Aligned_cols=20 Identities=40% Similarity=0.835 Sum_probs=10.3
Q ss_pred CCCCCCCCCCEEEEEEecCCCC
Q 036649 42 GPDDTPWDGGTFKLTLQFTEDY 63 (110)
Q Consensus 42 gp~~t~y~g~~f~~~i~fp~~Y 63 (110)
||+-.|-....|+++ ||++.
T Consensus 1 G~d~~P~RdHVFhlt--FPkeW 20 (87)
T PF08675_consen 1 GPDPQPSRDHVFHLT--FPKEW 20 (87)
T ss_dssp SS----SGCCEEEEE----TT-
T ss_pred CCCCCCCcceEEEEe--CchHh
Confidence 677778888888876 88775
No 96
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=24.10 E-value=86 Score=20.76 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=14.2
Q ss_pred CChHHHHHHHHHHHHHhh
Q 036649 1 MSTPAKKRLMRDFKRLQQ 18 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~ 18 (110)
|+.....+|++||+.|..
T Consensus 8 lT~eg~~~L~~EL~~L~~ 25 (158)
T PRK05892 8 LAPAARDHLEAELARLRA 25 (158)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 556678889999988875
No 97
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=24.02 E-value=47 Score=19.69 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=26.8
Q ss_pred EecCCCCCCCCCEEEEecc-----Ccccccc------CCCcEeccCC-CC--CCCCcccHHHHH
Q 036649 57 LQFTEDYPNKPPTVRFVSR-----MFHPNIY------ADGSICLDIL-QN--QWSPIYDVAAIL 106 (110)
Q Consensus 57 i~fp~~YP~~pP~v~f~t~-----i~Hpnv~------~~G~icl~~l-~~--~W~p~~~i~~il 106 (110)
+.||+.||-+--.+-..+. .-|-|+- .+..+|..-. .+ -|++.-=+..+.
T Consensus 7 mIlPdKYPCSIsSiLI~s~~~v~~~n~kn~L~~nqn~~~nh~ys~N~~fdeIhWTsq~Lid~~q 70 (89)
T PF07380_consen 7 MILPDKYPCSISSILITSECRVTMYNHKNTLYFNQNNYNNHMYSPNHMFDEIHWTSQDLIDATQ 70 (89)
T ss_pred EEcCCCCCceeeEEEEeccceeEEEeccchhhhhccCCCccccccCccchhhccchHHHHHHHH
Confidence 5799999987665544432 2355551 2344553221 22 288865444443
No 98
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=23.63 E-value=91 Score=20.28 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=14.7
Q ss_pred CChHHHHHHHHHHHHHhh
Q 036649 1 MSTPAKKRLMRDFKRLQQ 18 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~ 18 (110)
|+....+||++||..|+.
T Consensus 2 ~T~~g~~~L~~el~~L~~ 19 (151)
T TIGR01462 2 LTQEGYEKLKEELEYLKT 19 (151)
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 566778899999999975
No 99
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=23.12 E-value=48 Score=15.10 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=9.2
Q ss_pred CCCCCCCEEEEe
Q 036649 62 DYPNKPPTVRFV 73 (110)
Q Consensus 62 ~YP~~pP~v~f~ 73 (110)
.||..++.|++.
T Consensus 9 ~yp~GA~sVrCa 20 (25)
T PF06943_consen 9 MYPRGAPSVRCA 20 (25)
T ss_pred EcCCCCCCeECC
Confidence 388888888764
No 100
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=22.58 E-value=1e+02 Score=18.39 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHhh
Q 036649 3 TPAKKRLMRDFKRLQQ 18 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~ 18 (110)
+.+.+||.||+....+
T Consensus 6 t~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3578999999876654
No 101
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.68 E-value=96 Score=16.87 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhC
Q 036649 5 AKKRLMRDFKRLQQD 19 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~ 19 (110)
..+|+.+|+++++++
T Consensus 49 ~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 49 RIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457777777777754
No 102
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=21.65 E-value=2.7e+02 Score=18.86 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCC--CCCCCCEEEEEEecCCCCCCC
Q 036649 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDD--TPWDGGTFKLTLQFTEDYPNK 66 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~--t~y~g~~f~~~i~fp~~YP~~ 66 (110)
...++.+++.++.... .+..+...++.-..|.+.+.+... .....+.+.+++.+|+-|-..
T Consensus 53 ~~~~~~~~l~~~l~~~-~~~~l~f~d~p~~~y~~~~~~~~~~~~~~~~~~~ti~f~c~dPy~y~ 115 (249)
T PF05709_consen 53 DFEQKRRELASWLNPK-EPVKLIFDDDPDKYYYAKVSGSPDPDEGNNSGTFTITFTCPDPYAYS 115 (249)
T ss_dssp HHHHHHHHHHHHH--S-S-EEEEETTSTT-EEEEEEEEEEE--SSSSCEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCcC-CCEEEEEECCCCEEEEEEECCcccccccceeEEEEEEEEECCceeee
Confidence 3456677777777433 347777777767788887776421 113334777777765544433
No 103
>PF07325 Curto_V2: Curtovirus V2 protein; InterPro: IPR009931 This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process [].
Probab=21.39 E-value=34 Score=21.47 Aligned_cols=8 Identities=50% Similarity=1.240 Sum_probs=6.5
Q ss_pred ecCCCCCC
Q 036649 58 QFTEDYPN 65 (110)
Q Consensus 58 ~fp~~YP~ 65 (110)
.||.+||.
T Consensus 8 qFP~nYPa 15 (126)
T PF07325_consen 8 QFPDNYPA 15 (126)
T ss_pred cCCccchH
Confidence 58999994
No 104
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=21.07 E-value=52 Score=21.55 Aligned_cols=14 Identities=36% Similarity=1.016 Sum_probs=9.2
Q ss_pred ecCCCCCCC----CCEEE
Q 036649 58 QFTEDYPNK----PPTVR 71 (110)
Q Consensus 58 ~fp~~YP~~----pP~v~ 71 (110)
.+|.+||.. ||.|+
T Consensus 68 ~LP~E~PL~pGEk~P~iR 85 (138)
T PF11819_consen 68 ELPPEYPLEPGEKPPKIR 85 (138)
T ss_pred cCCCccCCCCCCCCCccc
Confidence 467777754 57765
No 105
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=20.76 E-value=2.3e+02 Score=17.74 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCC
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQD 30 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~ 30 (110)
|+...+++.+.|++.+.+.-...+.+...+
T Consensus 11 is~~~l~~fl~ev~~i~~~~~~~v~vi~~D 40 (126)
T PF09967_consen 11 ISDEELRRFLSEVAGILRRFPAEVHVIQFD 40 (126)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 556678999999999998765556554433
No 106
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [].; GO: 0004526 ribonuclease P activity, 0006396 RNA processing
Probab=20.44 E-value=48 Score=19.82 Aligned_cols=11 Identities=45% Similarity=1.141 Sum_probs=8.5
Q ss_pred EecCCCCCCCC
Q 036649 57 LQFTEDYPNKP 67 (110)
Q Consensus 57 i~fp~~YP~~p 67 (110)
..||.|||+.+
T Consensus 41 ~~FP~DyPdt~ 51 (92)
T PF08170_consen 41 PSFPDDYPDTP 51 (92)
T ss_pred CcCCCCCCCCH
Confidence 46899999864
No 107
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.14 E-value=1.7e+02 Score=16.06 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCe
Q 036649 4 PAKKRLMRDFKRLQQDPPAGI 24 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~ 24 (110)
.|..-..+|+++.+++...+.
T Consensus 32 EAIa~VA~elRe~hk~~~~~~ 52 (60)
T COG3140 32 EAIALVAQELRENHKGENRIV 52 (60)
T ss_pred hHHHHHHHHHHHHhccccccc
Confidence 566777788888887765443
Done!