Query 036649
Match_columns 110
No_of_seqs 141 out of 1075
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 06:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ayz_A UBC2, ubiquitin-conjuga 100.0 7.2E-46 2.5E-50 248.0 12.5 110 1-110 1-110 (169)
2 2aak_A UBC1, ubiquitin conjuga 100.0 2E-45 6.9E-50 242.2 12.7 110 1-110 1-110 (152)
3 2fo3_A Ubiquitin-conjugating e 100.0 2.3E-45 7.8E-50 235.1 12.5 107 4-110 6-113 (125)
4 2ucz_A UBC7, ubiquitin conjuga 100.0 5.5E-45 1.9E-49 242.9 13.9 110 1-110 1-124 (165)
5 2a7l_A Hypothetical ubiquitin- 100.0 1.3E-45 4.6E-50 239.0 10.5 109 1-110 20-132 (136)
6 1zdn_A Ubiquitin-conjugating e 100.0 5.3E-45 1.8E-49 241.5 12.7 110 1-110 10-119 (158)
7 2c2v_B Ubiquitin-conjugating e 100.0 1.9E-45 6.5E-50 242.8 10.2 110 1-110 2-111 (154)
8 2h2y_A Ubiquitin-conjugating e 100.0 1.1E-44 3.6E-49 234.9 13.2 107 4-110 20-127 (136)
9 4gpr_A Ubiquitin-conjugating e 100.0 1.5E-44 5.1E-49 237.8 13.9 109 2-110 2-110 (151)
10 2e2c_A Ubiquitin conjugating e 100.0 9.2E-45 3.1E-49 239.9 12.4 110 1-110 6-115 (156)
11 2ayv_A Ubiquitin-conjugating e 100.0 2.5E-44 8.7E-49 239.8 13.4 108 3-110 20-127 (166)
12 1z2u_A Ubiquitin-conjugating e 100.0 2E-44 6.9E-49 237.0 12.6 109 2-110 2-110 (150)
13 2c4o_A Ubiquitin-conjugating e 100.0 5E-44 1.7E-48 238.3 14.1 108 3-110 18-125 (165)
14 1i7k_A Ubiquitin-conjugating e 100.0 1.2E-44 4.1E-49 243.8 11.0 110 1-110 27-136 (179)
15 3h8k_A Ubiquitin-conjugating e 100.0 5.9E-44 2E-48 237.7 13.8 109 2-110 1-123 (164)
16 1yh2_A HSPC150 protein similar 100.0 6.4E-44 2.2E-48 238.6 14.0 109 2-110 2-114 (169)
17 2bep_A Ubiquitin-conjugating e 100.0 6.1E-44 2.1E-48 236.6 13.3 110 1-110 5-118 (159)
18 1yrv_A Ubiquitin-conjugating l 100.0 1.4E-44 4.9E-49 241.6 10.0 110 1-110 20-132 (169)
19 2r0j_A Ubiquitin carrier prote 100.0 3.1E-44 1.1E-48 235.9 11.2 105 6-110 3-107 (149)
20 2gjd_A Ubiquitin-conjugating e 100.0 4.8E-44 1.6E-48 236.7 11.2 110 1-110 1-117 (157)
21 1jat_A Ubiquitin-conjugating e 100.0 3.4E-44 1.1E-48 237.0 10.4 108 3-110 4-111 (155)
22 3rz3_A Ubiquitin-conjugating e 100.0 2.2E-43 7.4E-48 238.6 13.7 110 1-110 3-127 (183)
23 3rcz_B SUMO-conjugating enzyme 100.0 1.3E-43 4.3E-48 235.9 11.8 109 2-110 8-123 (163)
24 3k9o_A Ubiquitin-conjugating e 100.0 1.5E-43 5.1E-48 242.4 12.1 110 1-110 2-115 (201)
25 1fxt_A Ubiquitin-conjugating e 100.0 9.5E-44 3.2E-48 233.5 10.1 106 5-110 2-109 (149)
26 2grr_A Ubiquitin-conjugating e 100.0 2.1E-43 7.2E-48 234.5 11.7 110 1-110 4-120 (161)
27 3bzh_A Ubiquitin-conjugating e 100.0 5.9E-43 2E-47 238.2 13.8 108 3-110 47-154 (194)
28 2awf_A Ubiquitin-conjugating e 100.0 4.5E-43 1.5E-47 235.0 13.0 108 3-110 16-137 (172)
29 2pwq_A Ubiquitin conjugating e 100.0 1.7E-43 5.9E-48 244.0 11.0 109 2-110 21-130 (216)
30 2a4d_A Ubiquitin-conjugating e 100.0 2.7E-42 9.2E-47 228.6 13.3 109 2-110 23-138 (160)
31 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.1E-42 3.8E-47 236.6 11.4 107 4-110 32-152 (193)
32 3e46_A Ubiquitin-conjugating e 100.0 2.5E-42 8.5E-47 242.9 13.4 110 1-110 54-167 (253)
33 1wzv_A Ubiquitin-conjugating e 100.0 2E-42 6.8E-47 228.5 11.4 108 2-110 2-111 (155)
34 2y9m_A Ubiquitin-conjugating e 100.0 4.9E-42 1.7E-46 230.0 13.0 110 1-110 3-127 (172)
35 1y8x_A Ubiquitin-conjugating e 100.0 9.9E-42 3.4E-46 226.2 12.0 105 3-110 5-110 (160)
36 1tte_A Ubiquitin-conjugating e 100.0 1.3E-42 4.5E-47 239.5 6.7 107 4-110 2-110 (215)
37 2nvu_C NEDD8-conjugating enzym 100.0 1.6E-41 5.5E-46 228.8 11.3 106 2-110 24-130 (180)
38 3fn1_B NEDD8-conjugating enzym 100.0 2.6E-41 9E-46 225.5 12.1 107 3-110 13-126 (167)
39 1jat_B Ubiquitin-conjugating e 100.0 1.5E-41 5.2E-46 220.5 10.5 109 1-110 2-118 (138)
40 4ds2_A Ubiquitin-conjugating e 100.0 4.1E-42 1.4E-46 229.4 7.4 107 1-107 5-125 (167)
41 2q0v_A Ubiquitin-conjugating e 100.0 2.9E-41 1E-45 223.0 11.1 107 3-110 20-133 (156)
42 2hlw_A Ubiquitin-conjugating e 100.0 1.6E-41 5.5E-46 226.9 9.6 108 3-110 34-148 (170)
43 1c4z_D UBCH7, ubiquitin conjug 100.0 4.9E-41 1.7E-45 221.6 9.1 105 5-110 3-109 (154)
44 1zuo_A Hypothetical protein LO 100.0 3.7E-41 1.3E-45 228.1 7.8 110 1-110 24-150 (186)
45 2onu_A Ubiquitin-conjugating e 100.0 1.9E-41 6.4E-46 223.2 4.9 102 4-108 2-104 (152)
46 4ddg_A Ubiquitin-conjugating e 100.0 4.6E-40 1.6E-44 244.2 12.8 109 2-110 1-109 (399)
47 2z5d_A Ubiquitin-conjugating e 100.0 4.3E-41 1.5E-45 226.4 6.3 106 1-110 20-129 (179)
48 3o2u_A NEDD8-conjugating enzym 100.0 6.9E-40 2.3E-44 222.5 11.3 105 3-110 28-139 (190)
49 2f4w_A Ubiquitin-conjugating e 100.0 1.2E-39 4.1E-44 220.8 11.2 106 3-110 13-121 (187)
50 1yf9_A Ubiquitin carrier prote 100.0 2.3E-40 7.8E-45 221.6 7.4 102 4-109 12-114 (171)
51 3ceg_A Baculoviral IAP repeat- 100.0 7.4E-39 2.5E-43 231.1 12.9 110 1-110 73-199 (323)
52 2z6o_A UFM1-conjugating enzyme 100.0 2.5E-33 8.6E-38 184.4 0.3 96 6-107 34-144 (172)
53 3kpa_A Probable ubiquitin fold 99.8 5E-23 1.7E-27 133.0 -0.1 86 6-100 36-132 (168)
54 3r3q_A Suppressor protein STP2 99.8 1.1E-19 3.6E-24 120.2 8.5 103 7-110 31-151 (162)
55 3obq_A Tumor susceptibility ge 99.6 4.8E-16 1.6E-20 101.1 5.6 76 29-110 49-133 (146)
56 2ebm_A RWD domain-containing p 97.1 0.0035 1.2E-07 38.9 7.9 67 6-74 12-78 (128)
57 2day_A Ring finger protein 25; 96.8 0.016 5.6E-07 35.8 9.1 69 7-75 11-83 (128)
58 2yz0_A Serine/threonine-protei 96.6 0.03 1E-06 35.0 9.4 68 7-75 13-86 (138)
59 3zqs_A E3 ubiquitin-protein li 96.3 0.028 9.5E-07 37.5 7.9 78 7-108 4-81 (186)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 95.6 0.11 3.8E-06 32.3 8.3 68 6-74 12-86 (137)
61 2ebk_A RWD domain-containing p 94.3 0.098 3.4E-06 32.2 5.2 66 8-74 11-79 (128)
62 2daw_A RWD domain containing p 94.0 0.062 2.1E-06 34.5 3.8 24 52-75 76-99 (154)
63 2dax_A Protein C21ORF6; RWD do 93.6 0.053 1.8E-06 34.6 3.0 25 51-75 73-97 (152)
64 3u3c_B Paxillin LD2 peptide; 4 88.9 0.4 1.4E-05 20.9 2.3 21 4-24 5-25 (26)
65 2bum_A Protocatechuate 3,4-dio 61.8 8.2 0.00028 25.9 3.5 25 49-73 109-138 (209)
66 3pft_A Flavin reductase; desul 47.7 11 0.00039 23.6 2.2 30 66-95 43-75 (157)
67 3rls_A YAF9, protein AF-9 homo 46.6 58 0.002 21.2 6.2 43 31-75 30-72 (175)
68 2bum_B Protocatechuate 3,4-dio 44.6 14 0.00049 25.3 2.5 25 49-73 134-165 (241)
69 3t63_M 3,4-PCD, protocatechuat 44.5 15 0.0005 25.3 2.5 24 50-73 134-164 (238)
70 2xsu_A Catechol 1,2 dioxygenas 42.9 15 0.00052 26.2 2.5 24 50-73 188-229 (312)
71 2azq_A Catechol 1,2-dioxygenas 42.2 16 0.00054 26.1 2.4 24 50-73 184-225 (311)
72 1tmx_A Hydroxyquinol 1,2-dioxy 41.7 16 0.00056 25.8 2.5 25 49-73 183-225 (293)
73 3t63_A 3,4-PCD, protocatechuat 41.3 18 0.00063 24.0 2.5 23 51-73 102-129 (200)
74 3n9t_A PNPC; phospholipid bind 39.8 18 0.00063 25.5 2.5 24 50-73 181-222 (290)
75 2boy_A 3-chlorocatechol 1,2-di 38.7 20 0.00068 24.8 2.5 24 50-73 154-195 (254)
76 1dmh_A 1,2-CTD, catechol 1,2-d 38.7 20 0.00067 25.6 2.5 24 50-73 187-228 (311)
77 3qrl_A Transcription initiatio 38.5 72 0.0025 20.0 5.8 43 33-77 32-77 (140)
78 3g9r_A Fusion complex of HIV-1 37.6 29 0.001 16.9 2.3 15 4-18 28-42 (42)
79 2rf4_B DNA-directed RNA polyme 37.1 19 0.00065 20.8 1.8 13 4-16 62-74 (87)
80 2ecu_A Flavin reductase (HPAC) 35.8 9.6 0.00033 23.7 0.5 31 65-95 40-73 (149)
81 3hhy_A 1,2-CTD, catechol 1,2-d 35.8 20 0.00069 25.2 2.1 24 50-73 183-224 (280)
82 3th1_A Chlorocatechol 1,2-diox 33.7 33 0.0011 23.8 2.9 24 50-73 151-192 (260)
83 2c5k_P Vacuolar protein sortin 31.9 24 0.00082 15.6 1.3 13 6-18 12-24 (26)
84 4hx6_A Oxidoreductase; structu 31.3 13 0.00046 24.0 0.6 31 65-95 57-90 (185)
85 2r0x_A Possible flavin reducta 31.2 12 0.0004 23.4 0.3 30 66-95 44-76 (158)
86 2qck_A Flavin reductase domain 30.4 15 0.00052 23.3 0.8 30 66-95 49-81 (167)
87 2d37_A Hypothetical NADH-depen 28.7 26 0.00088 22.5 1.6 29 65-93 60-91 (176)
88 2ccv_A Helix pomatia agglutini 28.3 92 0.0031 18.1 4.2 24 49-73 27-50 (101)
89 1yoa_A Putative flavoprotein; 27.3 13 0.00043 23.2 -0.1 30 66-95 42-74 (159)
90 3o5u_A Chlorocatechol 1,2-diox 26.7 45 0.0015 23.1 2.6 25 49-73 155-198 (257)
91 1m46_B IQ4, IQ4 motif from MYO 26.5 47 0.0016 14.2 2.0 13 5-17 9-21 (26)
92 3kxt_A Chromatin protein CREN7 26.3 42 0.0014 17.6 1.9 14 50-65 43-56 (56)
93 2jrw_A Cyclic extended PEP.1; 24.9 13 0.00045 16.0 -0.2 8 72-79 12-19 (26)
94 1usc_A Putative styrene monoox 24.8 13 0.00044 23.7 -0.4 31 65-95 45-78 (178)
95 3bnk_A Flavoredoxin; protein-F 24.5 17 0.00059 23.5 0.2 30 66-95 43-75 (196)
96 1i0r_A Conserved hypothetical 24.0 13 0.00044 23.6 -0.5 31 66-96 38-71 (169)
97 3e4v_A NADH:FMN oxidoreductase 23.4 20 0.00067 23.1 0.3 30 66-95 46-78 (186)
98 3rh7_A Hypothetical oxidoreduc 22.7 35 0.0012 24.2 1.5 30 66-95 58-90 (321)
99 1rz1_A Phenol 2-hydroxylase co 21.7 16 0.00055 22.8 -0.4 30 66-95 42-74 (161)
100 3cb0_A 4-hydroxyphenylacetate 21.1 21 0.00071 22.6 0.0 30 66-95 55-87 (173)
101 3nfw_A Flavin reductase-like, 20.4 17 0.00056 24.3 -0.6 31 65-95 68-101 (210)
102 1u9d_A Hypothetical protein VC 20.1 1.6E+02 0.0054 17.9 5.2 28 5-32 32-59 (122)
103 1hxv_A Trigger factor; FKBP fo 20.0 44 0.0015 19.7 1.4 18 49-66 79-96 (113)
No 1
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=7.2e-46 Score=247.95 Aligned_cols=110 Identities=66% Similarity=1.287 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
||+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 89899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.||+++|+++|+|+++|++||++||
T Consensus 81 I~~~G~ICl~iL~~~WsP~~~i~~vL~si~ 110 (169)
T 1ayz_A 81 VYANGEICLDILQNRWTPTYDVASILTSIQ 110 (169)
T ss_dssp BCTTSBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCCCeEeehhhccCCCCcCcHHHHHHHHH
Confidence 999999999999999999999999999885
No 2
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=2e-45 Score=242.19 Aligned_cols=110 Identities=97% Similarity=1.586 Sum_probs=107.6
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
||+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.||+++|.++|+|+++|++||.+||
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~ 110 (152)
T 2aak_A 81 IYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (152)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHH
T ss_pred CCCCCEEechhhcCCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999885
No 3
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-45 Score=235.06 Aligned_cols=107 Identities=29% Similarity=0.650 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccC-cccccc
Q 036649 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIY 82 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~ 82 (110)
.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 85 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY 85 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 83 ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
.+|+||+++|+++|+|++||++||++||
T Consensus 86 ~~G~iCl~iL~~~W~P~~~i~~vl~si~ 113 (125)
T 2fo3_A 86 SNGDICLSLLGDDYNPSLSISGLVLSII 113 (125)
T ss_dssp TTSBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCEEEchhcCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999985
No 4
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-45 Score=242.91 Aligned_cols=110 Identities=44% Similarity=0.976 Sum_probs=105.2
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCC-CCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (110)
||+.+.+||++|++++++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 899999999999999999999999999865 7999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEeccCC-------------CCCCCCcccHHHHHhhhC
Q 036649 80 NIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 80 nv~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~ 110 (110)
||+.+|.||+++| .++|+|++||++||++||
T Consensus 81 Nv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~ 124 (165)
T 2ucz_A 81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVM 124 (165)
T ss_dssp TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHH
T ss_pred CCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHH
Confidence 9999999999999 688999999999999885
No 5
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-45 Score=239.00 Aligned_cols=109 Identities=36% Similarity=0.722 Sum_probs=103.6
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEe--eCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCc-
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGA--PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF- 77 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~--~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~- 77 (110)
||+.+ +||++|++++++++++|+++. +.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~-~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~ 98 (136)
T 2a7l_A 20 MASMQ-KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIP 98 (136)
T ss_dssp GTTSC-HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCC
T ss_pred ccHHH-HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcC
Confidence 66544 999999999999999999965 78899999999999999999999999999999999999999999999999
Q ss_pred -cccccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 78 -HPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 78 -Hpnv~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
||||+.+|+||+++|+++|+|+++|++||++||
T Consensus 99 ~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~ 132 (136)
T 2a7l_A 99 VHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132 (136)
T ss_dssp CBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHH
T ss_pred CCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999986
No 6
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.3e-45 Score=241.51 Aligned_cols=110 Identities=30% Similarity=0.735 Sum_probs=106.9
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
||..+.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 10 ~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 89 (158)
T 1zdn_A 10 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN 89 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCC
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.||+++|+++|+|+++|++||.+||
T Consensus 90 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~ 119 (158)
T 1zdn_A 90 VGANGEICVNVLKRDWTAELGIRHVLLTIK 119 (158)
T ss_dssp BCTTSBBCHHHHTTTCCTTCCHHHHHHHHH
T ss_pred CCCCCEEehhhcCCCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999885
No 7
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-45 Score=242.78 Aligned_cols=110 Identities=42% Similarity=0.868 Sum_probs=106.7
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
||..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.||+++|+++|+|+++|++||++||
T Consensus 82 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~ 111 (154)
T 2c2v_B 82 VDKLGRICLDILKDKWSPALQIRTVLLSIQ 111 (154)
T ss_dssp BCTTCBBCCHHHHTSCCTTCCHHHHHHHHH
T ss_pred CccCCeEEchhccCCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999885
No 8
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.1e-44 Score=234.91 Aligned_cols=107 Identities=26% Similarity=0.637 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccC-cccccc
Q 036649 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIY 82 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~ 82 (110)
.+.+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus 20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 99 (136)
T 2h2y_A 20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVY 99 (136)
T ss_dssp SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 83 ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
.+|.||+++|.++|+|+++|++||++||
T Consensus 100 ~~G~ICl~iL~~~WsP~~ti~~vL~si~ 127 (136)
T 2h2y_A 100 SNGDICLSVLGDDYNPSLSISGLILSII 127 (136)
T ss_dssp TTCCBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCEEECccccCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999985
No 9
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.5e-44 Score=237.82 Aligned_cols=109 Identities=44% Similarity=0.929 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccc
Q 036649 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (110)
|+.|.+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 82 YADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
+.+|.||+++|.++|+|+++|++||.+||
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~ 110 (151)
T 4gpr_A 82 NKNGVICLDILKDQWSPALTLSRVLLSIS 110 (151)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCCEEEcccccCCCCCCCcHHHHHHHHH
Confidence 99999999999999999999999999885
No 10
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=9.2e-45 Score=239.94 Aligned_cols=110 Identities=41% Similarity=0.809 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
|++.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 85 (156)
T 2e2c_A 6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPN 85 (156)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.||+++|.++|+|+++|++||++||
T Consensus 86 v~~~G~iCl~iL~~~W~p~~~i~~vL~si~ 115 (156)
T 2e2c_A 86 VDQSGNICLDILKENWTASYDVRTILLSLQ 115 (156)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CccCceEECccccccCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999885
No 11
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-44 Score=239.85 Aligned_cols=108 Identities=44% Similarity=0.965 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (110)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 99 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 83 ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
.+|.||+++|+++|+|+++|++||++||
T Consensus 100 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~ 127 (166)
T 2ayv_A 100 SQGAICLDILKDQWSPALTISKVLLSIS 127 (166)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCeEEcccccccCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999885
No 12
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=2e-44 Score=236.95 Aligned_cols=109 Identities=47% Similarity=0.953 Sum_probs=105.4
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccc
Q 036649 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (110)
|..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 82 YADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
+.+|.||+++|+++|+|+++|++||.+||
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~ 110 (150)
T 1z2u_A 82 NSNGSICLDILRSQWSPALTISKVLLSIC 110 (150)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCCeEeeccccCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999885
No 13
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=5e-44 Score=238.26 Aligned_cols=108 Identities=47% Similarity=0.974 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (110)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 83 ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
.+|.||+++|+++|+|+++|++||.+||
T Consensus 98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~ 125 (165)
T 2c4o_A 98 SNGSICLDILRSQWSPALTISKVLLSIC 125 (165)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCeEeehhhcCCCCCcCcHHHHHHHHH
Confidence 9999999999999999999999999885
No 14
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-44 Score=243.80 Aligned_cols=110 Identities=39% Similarity=0.755 Sum_probs=104.4
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
|++.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.||+++|.++|+|+++|++||++||
T Consensus 107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~ 136 (179)
T 1i7k_A 107 VDTQGNISLDILKEKWSALYDVRTILLSIQ 136 (179)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred cccCCeEEcccCcCcCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999885
No 15
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=5.9e-44 Score=237.72 Aligned_cols=109 Identities=46% Similarity=0.935 Sum_probs=104.3
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEeeCCC-CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
|+.|.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (164)
T 3h8k_A 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN 80 (164)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence 467899999999999999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCC-------------CCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.||+++|. ++|+|++||++||++||
T Consensus 81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~ 123 (164)
T 3h8k_A 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 123 (164)
T ss_dssp BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHH
T ss_pred CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHH
Confidence 9999999999997 78999999999999985
No 16
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.4e-44 Score=238.59 Aligned_cols=109 Identities=39% Similarity=0.787 Sum_probs=105.6
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccc
Q 036649 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (110)
|+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCC----CCCCCcccHHHHHhhhC
Q 036649 82 YADGSICLDILQ----NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 82 ~~~G~icl~~l~----~~W~p~~~i~~il~~i~ 110 (110)
+.+|.||+++|+ ++|+|+++|++||++||
T Consensus 82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~ 114 (169)
T 1yh2_A 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQ 114 (169)
T ss_dssp CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHH
T ss_pred CcCCeEecccccCCcccCCCCCCcHHHHHHHHH
Confidence 999999999998 89999999999999885
No 17
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=6.1e-44 Score=236.62 Aligned_cols=110 Identities=38% Similarity=0.770 Sum_probs=105.3
Q ss_pred CChHHHHHHHHHHHHHhhC---CCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCc
Q 036649 1 MSTPAKKRLMRDFKRLQQD---PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (110)
||+.+.+||++|+++++++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 7788999999999999985 5789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 78 Hpnv~-~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
||||+ .+|.||+++|.++|+|+++|++||++||
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~ 118 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 118 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHH
Confidence 99999 5999999999999999999999999885
No 18
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-44 Score=241.61 Aligned_cols=110 Identities=35% Similarity=0.727 Sum_probs=106.7
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
|++.+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCCcEeccCCC--CCCCCcccHHHHHhhhC
Q 036649 81 I-YADGSICLDILQ--NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v-~~~G~icl~~l~--~~W~p~~~i~~il~~i~ 110 (110)
| +.+|.||+++|+ ++|+|+++|++||++||
T Consensus 100 I~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~ 132 (169)
T 1yrv_A 100 VDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQ 132 (169)
T ss_dssp BCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHH
T ss_pred ccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHH
Confidence 9 799999999998 89999999999999985
No 19
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=3.1e-44 Score=235.85 Aligned_cols=105 Identities=45% Similarity=0.925 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccCCC
Q 036649 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 85 (110)
.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 82 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 82 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCCCCCCCcccHHHHHhhhC
Q 036649 86 SICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 86 ~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
.||+++|+++|+|++||++||.+||
T Consensus 83 ~iCl~iL~~~W~p~~~i~~vl~~i~ 107 (149)
T 2r0j_A 83 RICLDILKDKWSPALQIRTVLLSIQ 107 (149)
T ss_dssp BBCCGGGTTTCCTTSCHHHHHHHHH
T ss_pred EEechhcCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999985
No 20
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=4.8e-44 Score=236.74 Aligned_cols=110 Identities=35% Similarity=0.815 Sum_probs=103.5
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeCC-----CCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQD-----NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
||+.+.+||++|++++++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 898999999999999999999999998854 489999999999999999999999999999999999999999999
Q ss_pred CccccccCCCcEeccCCCC--CCCCcccHHHHHhhhC
Q 036649 76 MFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110 (110)
Q Consensus 76 i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~il~~i~ 110 (110)
+|||||+.+|.||+++|.+ +|+|+++|++||++||
T Consensus 81 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~ 117 (157)
T 2gjd_A 81 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQ 117 (157)
T ss_dssp CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHH
T ss_pred CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999987 7999999999999885
No 21
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=3.4e-44 Score=237.03 Aligned_cols=108 Identities=39% Similarity=0.869 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (110)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 83 ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
.+|.||+++|.++|+|+++|++||.+||
T Consensus 84 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~ 111 (155)
T 1jat_A 84 RLGRICLDVLKTNWSPALQIRTVLLSIQ 111 (155)
T ss_dssp TTCCBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCEEEchhhccCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999885
No 22
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.2e-43 Score=238.58 Aligned_cols=110 Identities=39% Similarity=0.872 Sum_probs=103.3
Q ss_pred CC-hHHHHHHHHHHHHHhhCCCCCeEEe-eCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcc
Q 036649 1 MS-TPAKKRLMRDFKRLQQDPPAGISGA-PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (110)
Q Consensus 1 Ms-~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (110)
|+ +.+.|||++|++++++++++|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 44 5789999999999999999999999 678899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccCCC-------------CCCCCcccHHHHHhhhC
Q 036649 79 PNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 79 pnv~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~ 110 (110)
|||+.+|.||+++|. ++|+|++||++||++||
T Consensus 83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~ 127 (183)
T 3rz3_A 83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 127 (183)
T ss_dssp TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHH
Confidence 999999999999997 88999999999999985
No 23
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-43 Score=235.88 Aligned_cols=109 Identities=40% Similarity=0.877 Sum_probs=103.3
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEeeCCC-----CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccC
Q 036649 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM 76 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i 76 (110)
|..|.+||+||++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i 87 (163)
T 3rcz_B 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87 (163)
T ss_dssp -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 457899999999999999999999998655 899999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcEeccCCCCC--CCCcccHHHHHhhhC
Q 036649 77 FHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQ 110 (110)
Q Consensus 77 ~Hpnv~~~G~icl~~l~~~--W~p~~~i~~il~~i~ 110 (110)
|||||+.+|.||+++|.+. |+|+++|++||++||
T Consensus 88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~ 123 (163)
T 3rcz_B 88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQ 123 (163)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHH
T ss_pred ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHH
Confidence 9999999999999999765 999999999999985
No 24
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.5e-43 Score=242.44 Aligned_cols=110 Identities=38% Similarity=0.767 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCc
Q 036649 1 MSTPAKKRLMRDFKRLQQDP---PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (110)
||+.+.+||++|++++++++ +.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 88889999999999999873 679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 78 Hpnv~-~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
||||+ .+|.||+++|.++|+|+++|++||++||
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~ 115 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 115 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHH
Confidence 99999 5999999999999999999999999985
No 25
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=9.5e-44 Score=233.53 Aligned_cols=106 Identities=37% Similarity=0.795 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCC-CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccC
Q 036649 5 AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 83 (110)
+.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999999999999999999877 9999999999999999999999999999999999999999999999999997
Q ss_pred -CCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 84 -DGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 84 -~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
+|.||+++|.++|+|+++|++||++||
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~ 109 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQ 109 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHH
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999885
No 26
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=2.1e-43 Score=234.48 Aligned_cols=110 Identities=42% Similarity=0.880 Sum_probs=104.8
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeeC-----CCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQ-----DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~-----~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
||+.+.+||++|++++++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 88889999999999999999999999875 3689999999999999999999999999999999999999999999
Q ss_pred CccccccCCCcEeccCCCC--CCCCcccHHHHHhhhC
Q 036649 76 MFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110 (110)
Q Consensus 76 i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~il~~i~ 110 (110)
+|||||+.+|.||+++|.+ +|+|+++|++||.+||
T Consensus 84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~ 120 (161)
T 2grr_A 84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 120 (161)
T ss_dssp CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHH
T ss_pred cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHH
Confidence 9999999999999999986 8999999999999885
No 27
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=5.9e-43 Score=238.15 Aligned_cols=108 Identities=40% Similarity=0.860 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (110)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 83 ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
.+|.||+++|.++|+|+++|.+||++||
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~ 154 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLLSIC 154 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCceechhhhccCCCcCcHHHHHHHHH
Confidence 9999999999999999999999999885
No 28
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=4.5e-43 Score=235.00 Aligned_cols=108 Identities=36% Similarity=0.825 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeeCC-CCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (110)
+.+.+||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 16 ~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV 95 (172)
T 2awf_A 16 PRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 95 (172)
T ss_dssp CTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCC
Confidence 5678999999999999999999999865 799999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCC-------------CCCCCcccHHHHHhhhC
Q 036649 82 YADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 82 ~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~ 110 (110)
+.+|.||+++|. ++|+|+++|++||++||
T Consensus 96 ~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~ 137 (172)
T 2awf_A 96 DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVI 137 (172)
T ss_dssp CTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHH
T ss_pred CCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHH
Confidence 999999999996 68999999999999885
No 29
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.7e-43 Score=244.04 Aligned_cols=109 Identities=38% Similarity=0.831 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccc
Q 036649 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (110)
++.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 100 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 82 Y-ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 82 ~-~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
+ .+|.||+++|+++|+|+++|++||++||
T Consensus 101 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~ 130 (216)
T 2pwq_A 101 SSQTGAICLDVLKNEWSPALTIRTALLSIQ 130 (216)
T ss_dssp CTTTCBBCCHHHHHHCCTTCCHHHHHHHHH
T ss_pred cCCCCEEEchhhcccCCCCCcHHHHHHHHH
Confidence 9 6999999999999999999999999985
No 30
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.7e-42 Score=228.63 Aligned_cols=109 Identities=23% Similarity=0.554 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHHHhhCCCCC-eEEee-CCCC--cceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCc
Q 036649 2 STPAKKRLMRDFKRLQQDPPAG-ISGAP-QDNN--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (110)
...+.+||+||++++++++++| +++.+ .++| +++|+++|.||++||||||.|+++|.||++||++||+|+|.|++|
T Consensus 23 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 102 (160)
T 2a4d_A 23 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 102 (160)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred echHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence 4578899999999999998888 77876 4554 899999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeccCCC--CCCCCcccHHHHHhhhC
Q 036649 78 HPNIY-ADGSICLDILQ--NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 78 Hpnv~-~~G~icl~~l~--~~W~p~~~i~~il~~i~ 110 (110)
||||+ .+|+||+++|. ++|+|+++|++||++||
T Consensus 103 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~ 138 (160)
T 2a4d_A 103 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELR 138 (160)
T ss_dssp CTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHH
T ss_pred eCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHH
Confidence 99999 79999999998 89999999999999985
No 31
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-42 Score=236.56 Aligned_cols=107 Identities=39% Similarity=0.817 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhhCCC-------------CCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEE
Q 036649 4 PAKKRLMRDFKRLQQDPP-------------AGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTV 70 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~-------------~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v 70 (110)
.+.+||++|+++++++++ .|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 467899999999999887 7999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccccc-CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 71 RFVSRMFHPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 71 ~f~t~i~Hpnv~-~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
+|.|+||||||+ .+|.||+++|.++|+|+++|++||++||
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~ 152 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQ 152 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHH
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHH
Confidence 999999999999 6999999999999999999999999985
No 32
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.5e-42 Score=242.89 Aligned_cols=110 Identities=38% Similarity=0.770 Sum_probs=105.5
Q ss_pred CChHHHHHHHHHHHHHhhC---CCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCc
Q 036649 1 MSTPAKKRLMRDFKRLQQD---PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (110)
||+.+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 7888999999999999987 4679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 78 Hpnv~-~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
||||+ .+|.||+++|.++|+|+++|++||++||
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~ 167 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 167 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHH
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHHHH
Confidence 99999 5999999999999999999999999985
No 33
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=2e-42 Score=228.50 Aligned_cols=108 Identities=31% Similarity=0.825 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEE-eeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 2 STPAKKRLMRDFKRLQQDPPAGISG-APQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~-~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
|..+.+||++|++++++++++|+++ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (155)
T 1wzv_A 2 SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN 80 (155)
T ss_dssp ---CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cchHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCc
Confidence 3357899999999999999999999 778999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCC-CCCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDIL-QNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l-~~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.||+++| .++|+|+++|++||.+||
T Consensus 81 V~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~ 111 (155)
T 1wzv_A 81 VDENGQICLPIISSENWKPCTKTCQVLEALN 111 (155)
T ss_dssp BCTTCBCCCGGGCTTTCCTTCCHHHHHHHHH
T ss_pred CCCCCeEeecCCCccCCCCCCcHHHHHHHHH
Confidence 999999999999 899999999999999885
No 34
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=4.9e-42 Score=229.99 Aligned_cols=110 Identities=29% Similarity=0.729 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHHHhh-C-C------CC---CeEEee-CCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCC
Q 036649 1 MSTPAKKRLMRDFKRLQQ-D-P------PA---GISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPP 68 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP 68 (110)
||+.+.+||++|++++++ + + +. ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 788899999999999998 4 3 33 466777 7889999999999999999999999999999999999999
Q ss_pred EEEEec-cCcccccc-CCCcEeccCCC-CCCCCcccHHHHHhhhC
Q 036649 69 TVRFVS-RMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 69 ~v~f~t-~i~Hpnv~-~~G~icl~~l~-~~W~p~~~i~~il~~i~ 110 (110)
+|+|.| ++|||||+ .+|.||+++|+ ++|+|+++|++||++||
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~ 127 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVW 127 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHH
Confidence 999999 99999996 89999999998 89999999999999885
No 35
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.9e-42 Score=226.20 Aligned_cols=105 Identities=28% Similarity=0.694 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEe-eCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGA-PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (110)
+.+.+||++|++++ ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 46789999999999 567899998 7889999999988 9999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 82 YADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
+.+|.||+++|+++|+|+++|++||.+||
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~ 110 (160)
T 1y8x_A 82 DLEGNVCLNILREDWKPVLTINSIIYGLQ 110 (160)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred CCCCeEEcccchhhccCCCCHHHHHHHHH
Confidence 99999999999999999999999999885
No 36
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.3e-42 Score=239.51 Aligned_cols=107 Identities=36% Similarity=0.789 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCC-CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccccc
Q 036649 4 PAKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (110)
.+.+||++|++++++++++|+++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 3679999999999999999999999766 466999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 83 A-DGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 83 ~-~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
. +|.||+++|+++|+|++||.+||++||
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~ 110 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQ 110 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHH
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHH
Confidence 8 999999999999999999999999985
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-41 Score=228.84 Aligned_cols=106 Identities=26% Similarity=0.656 Sum_probs=100.6
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEe-eCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccc
Q 036649 2 STPAKKRLMRDFKRLQQDPPAGISGA-PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (110)
++.+.+||++|++++ ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 100 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 100 (180)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence 457889999999999 567899998 7889999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 81 IYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|+.+|.||+++|.++|+|+++|++||.+||
T Consensus 101 V~~~G~iCl~iL~~~W~p~~~i~~vL~si~ 130 (180)
T 2nvu_C 101 IDLEGNVALNILREDWKPVLTINSIIYGLQ 130 (180)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHH
T ss_pred CCCCCcEEcccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999885
No 38
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=2.6e-41 Score=225.51 Aligned_cols=107 Identities=23% Similarity=0.576 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEee-CCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (110)
+.+.+||++|++++++++++|+++.+ .++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 56889999999999999999999986 567899999998 8999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCCC------CCCCcccHHHHHhhhC
Q 036649 82 YADGSICLDILQN------QWSPIYDVAAILTSIQ 110 (110)
Q Consensus 82 ~~~G~icl~~l~~------~W~p~~~i~~il~~i~ 110 (110)
+.+|.||+++|.. +|+|+++|++||++||
T Consensus 92 ~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~ 126 (167)
T 3fn1_B 92 TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLN 126 (167)
T ss_dssp CTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHH
T ss_pred CCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHH
Confidence 9999999999975 7999999999999885
No 39
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.5e-41 Score=220.53 Aligned_cols=109 Identities=25% Similarity=0.604 Sum_probs=97.0
Q ss_pred CCh-HHHHHHHHHHHHHhhC-CCCCeEEeeCC-C--CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 1 MST-PAKKRLMRDFKRLQQD-PPAGISGAPQD-N--NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 1 Ms~-~~~~Rl~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
||+ .+.+||+||+++++++ ++.|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 673 5679999999999998 78899998843 3 58999999999999999999999999999999999999999999
Q ss_pred CccccccCC-CcE--eccCCCCCCCCcccHHHHHhhhC
Q 036649 76 MFHPNIYAD-GSI--CLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 76 i~Hpnv~~~-G~i--cl~~l~~~W~p~~~i~~il~~i~ 110 (110)
+|||||+.+ |.| |+++|. +|+|+++|++||++||
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~ 118 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLR 118 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHH
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHH
Confidence 999999975 999 899886 8999999999999985
No 40
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=4.1e-42 Score=229.45 Aligned_cols=107 Identities=28% Similarity=0.648 Sum_probs=102.4
Q ss_pred CChHHHHHHHHHHHHHhhCC------------CCCeEEeeCCCCcceEEEEEECCCCCCCC--CCEEEEEEecCCCCCCC
Q 036649 1 MSTPAKKRLMRDFKRLQQDP------------PAGISGAPQDNNIMLWNAVIFGPDDTPWD--GGTFKLTLQFTEDYPNK 66 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~------------~~~~~~~~~~~~~~~w~~~i~gp~~t~y~--g~~f~~~i~fp~~YP~~ 66 (110)
||+.+.+||++|++++++++ +.|+.+.+.++|+++|+++|.||++|||+ ||.|+++|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 88889999999999999977 67899999999999999999999999999 99999999999999999
Q ss_pred CCEEEEeccCccccccCCCcEeccCCCCCCCCcccHHHHHh
Q 036649 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 107 (110)
Q Consensus 67 pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 107 (110)
||+|+|.|++|||||+.+|.||+++|.++|+|+++++++|+
T Consensus 85 pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll 125 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIK 125 (167)
T ss_dssp CCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHH
T ss_pred CCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHH
Confidence 99999999999999999999999999999999999998754
No 41
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=2.9e-41 Score=223.01 Aligned_cols=107 Identities=28% Similarity=0.587 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHhhC-CCCCeEEeeCC-C--CcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcc
Q 036649 3 TPAKKRLMRDFKRLQQD-PPAGISGAPQD-N--NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (110)
..+.+||++|+++++++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 99 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 99 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence 45789999999999998 78899998843 3 59999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcE---eccCCCCCCCCcccHHHHHhhhC
Q 036649 79 PNIYADGSI---CLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 79 pnv~~~G~i---cl~~l~~~W~p~~~i~~il~~i~ 110 (110)
|||+.+|.| |+++|. +|+|+++|++||++||
T Consensus 100 PNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~ 133 (156)
T 2q0v_A 100 SCVDNCGRVIKNNLHILK-NWNRNYTIETILISLR 133 (156)
T ss_dssp TTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHH
T ss_pred CCCccCCeEehhhccccc-CCCCcCcHHHHHHHHH
Confidence 999999999 888887 5999999999999985
No 42
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=226.93 Aligned_cols=108 Identities=23% Similarity=0.559 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHhhCCCCC-eEEee-CCCC--cceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAG-ISGAP-QDNN--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (110)
..+.+||++|++++++++++| +++.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 457899999999999998888 67776 4554 8999999999999999999999999999999999999999999999
Q ss_pred cccc-CCCcEeccCCC--CCCCCcccHHHHHhhhC
Q 036649 79 PNIY-ADGSICLDILQ--NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 79 pnv~-~~G~icl~~l~--~~W~p~~~i~~il~~i~ 110 (110)
|||+ .+|.||+++|. ++|+|++||++||++||
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~ 148 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELR 148 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHH
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHH
Confidence 9999 79999999998 89999999999999985
No 43
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=4.9e-41 Score=221.64 Aligned_cols=105 Identities=29% Similarity=0.800 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccC
Q 036649 5 AKKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 83 (110)
+.+||++|++++++++++|+++.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 568999999999999999998654 7789999999998 99999999999999999999999999999999999999999
Q ss_pred CCcEeccCCC-CCCCCcccHHHHHhhhC
Q 036649 84 DGSICLDILQ-NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 84 ~G~icl~~l~-~~W~p~~~i~~il~~i~ 110 (110)
+|.||+++|. ++|+|++||++||++||
T Consensus 82 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~ 109 (154)
T 1c4z_D 82 KGQVCLPVISAENWKPATKTDQVIQSLI 109 (154)
T ss_dssp TCBBCCTTTSSSSCCTTCCHHHHHHHHH
T ss_pred CCEEECCCCCCCCCCCCCcHHHHHHHHH
Confidence 9999999996 89999999999999885
No 44
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=3.7e-41 Score=228.05 Aligned_cols=110 Identities=22% Similarity=0.513 Sum_probs=104.6
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEeeCCCCcceEEEEEECC-CCCCCCC-----------CEEEEEEecCCCCCC
Q 036649 1 MSTPAKKRLMRDFKRLQQDP---PAGISGAPQDNNIMLWNAVIFGP-DDTPWDG-----------GTFKLTLQFTEDYPN 65 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp-~~t~y~g-----------~~f~~~i~fp~~YP~ 65 (110)
||+.+.+||++|++++++++ +.++++.+.++|+++|+++|.|| ++|||+| |.|+++|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 67889999999999999988 67899999999999999999998 8999998 899999999999999
Q ss_pred CCCEEEEeccCccc-cccCCCcEeccCCC-CCCCCcccHHHHHhhhC
Q 036649 66 KPPTVRFVSRMFHP-NIYADGSICLDILQ-NQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 66 ~pP~v~f~t~i~Hp-nv~~~G~icl~~l~-~~W~p~~~i~~il~~i~ 110 (110)
+||+|+|.|++||| ||+.+|.||+++|. ++|+|+++|++||++||
T Consensus 104 ~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~ 150 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQIN 150 (186)
T ss_dssp SCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHH
T ss_pred CCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHH
Confidence 99999999999999 69999999999997 78999999999999985
No 45
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-41 Score=223.25 Aligned_cols=102 Identities=27% Similarity=0.717 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccccc-
Q 036649 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY- 82 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~- 82 (110)
++.+||++|+++++++ |+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 sa~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp -CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred hHHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 4679999999999874 788888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcccHHHHHhh
Q 036649 83 ADGSICLDILQNQWSPIYDVAAILTS 108 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~ 108 (110)
.+|.||+++|.++|+|+++|++||.+
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ 104 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEV 104 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHT
T ss_pred cCCeEecccccccCCCCCCHHHHHHH
Confidence 59999999999999999999999987
No 46
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=4.6e-40 Score=244.19 Aligned_cols=109 Identities=46% Similarity=0.929 Sum_probs=105.7
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccc
Q 036649 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (110)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (110)
++.|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 1 ~s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 80 (399)
T 4ddg_A 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80 (399)
T ss_dssp CHHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 82 YADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
+.+|.||+++|+++|+|++||++||.+||
T Consensus 81 ~~~G~iCl~il~~~W~p~~~i~~vL~~i~ 109 (399)
T 4ddg_A 81 NSNGSISLDILRSQWSPALTISKVLLSIC 109 (399)
T ss_dssp CTTCBBCCGGGTTSCCTTCCHHHHHHHHH
T ss_pred CCCCeEeCcccccCCCccccHHHHHHHHH
Confidence 99999999999999999999999999885
No 47
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-41 Score=226.36 Aligned_cols=106 Identities=31% Similarity=0.766 Sum_probs=96.9
Q ss_pred CCh--HHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcc
Q 036649 1 MST--PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (110)
Q Consensus 1 Ms~--~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (110)
||+ .+.+||++|++++++ +|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~H 95 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFH 95 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred CCCchHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCcc
Confidence 554 578999999999985 47888876 678999999999999999999999999999999999999999999999
Q ss_pred ccccC-CCcEeccCCCCCCCCcccHHHHHhh-hC
Q 036649 79 PNIYA-DGSICLDILQNQWSPIYDVAAILTS-IQ 110 (110)
Q Consensus 79 pnv~~-~G~icl~~l~~~W~p~~~i~~il~~-i~ 110 (110)
|||+. +|.||+++|.++|+|+++|++||++ ||
T Consensus 96 PNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~ 129 (179)
T 2z5d_A 96 PNIDEASGTVCLDVINQTWTALYDLTNIFESFLP 129 (179)
T ss_dssp TTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHH
T ss_pred CcCCCCCCeEeccccccCCCCCCCHHHHHHHHHH
Confidence 99997 9999999999999999999999998 64
No 48
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=6.9e-40 Score=222.49 Aligned_cols=105 Identities=33% Similarity=0.707 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEe----eCCCCcc---eEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGA----PQDNNIM---LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~----~~~~~~~---~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
+.+.+||++|+++++ +++|+++. +.++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp CHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred cHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 568899999999998 67899998 7899999 9999997 788999999999999999999999999999999
Q ss_pred CccccccCCCcEeccCCCCCCCCcccHHHHHhhhC
Q 036649 76 MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 76 i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~~i~ 110 (110)
+|||||+.+|.||+++|.++|+|+++|++||.+||
T Consensus 105 i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~ 139 (190)
T 3o2u_A 105 IFHPNIDLKGNVCLNILREDWSPALDLQSIITGLL 139 (190)
T ss_dssp CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHH
T ss_pred cccCCCCCCCeEechhccCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999885
No 49
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-39 Score=220.82 Aligned_cols=106 Identities=33% Similarity=0.738 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccccc
Q 036649 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (110)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (110)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ ||||+
T Consensus 13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~ 90 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK 90 (187)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCCcEeccCC---CCCCCCcccHHHHHhhhC
Q 036649 83 ADGSICLDIL---QNQWSPIYDVAAILTSIQ 110 (110)
Q Consensus 83 ~~G~icl~~l---~~~W~p~~~i~~il~~i~ 110 (110)
.+|.||+++| .++|+|+++|.+||.+||
T Consensus 91 ~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~ 121 (187)
T 2f4w_A 91 CNTRLCLSITDFHPDTWNPAWSVSTILTGLL 121 (187)
T ss_dssp TTSCBC----------CCTTCCHHHHHHHHH
T ss_pred cCCeEeeeccccCccCCCCcCcHHHHHHHHH
Confidence 9999999999 689999999999999885
No 50
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-40 Score=221.64 Aligned_cols=102 Identities=30% Similarity=0.715 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCcccccc-
Q 036649 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY- 82 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~- 82 (110)
.+.+||++|++++++++. ++ ..++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 567999999999999873 44 3578999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcccHHHHHhhh
Q 036649 83 ADGSICLDILQNQWSPIYDVAAILTSI 109 (110)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i 109 (110)
.+|.||+++|.++|+|+++|++||++|
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~si 114 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVF 114 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTH
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHH
Confidence 599999999999999999999999875
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=7.4e-39 Score=231.08 Aligned_cols=110 Identities=32% Similarity=0.683 Sum_probs=103.0
Q ss_pred CChHHHHHHHHHHHHHhhCCCCC----eEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc-
Q 036649 1 MSTPAKKRLMRDFKRLQQDPPAG----ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR- 75 (110)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~----~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~- 75 (110)
||+.+.+||++|++++++++++| +.+.+.++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+
T Consensus 73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~ 152 (323)
T 3ceg_A 73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTG 152 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCST
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccC
Confidence 56789999999999999987764 5677789999999999999999999999999999999999999999999998
Q ss_pred ----CccccccCCCcEeccCCC-------CCCCCcc-cHHHHHhhhC
Q 036649 76 ----MFHPNIYADGSICLDILQ-------NQWSPIY-DVAAILTSIQ 110 (110)
Q Consensus 76 ----i~Hpnv~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~ 110 (110)
+|||||+.+|.||+++|. ++|+|++ +|.+||++||
T Consensus 153 g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIq 199 (323)
T 3ceg_A 153 GHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQ 199 (323)
T ss_dssp TTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHH
T ss_pred CCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHH
Confidence 999999999999999997 6899999 8999999986
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.97 E-value=2.5e-33 Score=184.43 Aligned_cols=96 Identities=20% Similarity=0.387 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCC----------EEEEEEecCCCCCCCCCEEEEecc
Q 036649 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~----------~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
.+||++|++.+++ ++.+.++|+..|...+.||+||+|+|| .|.++|.||++||.+||+|+|.+.
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~ 107 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL 107 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence 8999999999998 366778899999999999999999999 999999999999999999999998
Q ss_pred -CccccccCCCcEeccCC-CC---CCCCcccHHHHHh
Q 036649 76 -MFHPNIYADGSICLDIL-QN---QWSPIYDVAAILT 107 (110)
Q Consensus 76 -i~Hpnv~~~G~icl~~l-~~---~W~p~~~i~~il~ 107 (110)
+|||||+.+|+|||++| +. +|+|+++|.++|.
T Consensus 108 ~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 108 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp TTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence 99999999999999999 43 4669999999984
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.85 E-value=5e-23 Score=132.98 Aligned_cols=86 Identities=21% Similarity=0.480 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCC----------EEEEEEecCCCCCCCCCEEEEecc
Q 036649 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~----------~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
..||.+|+..|.+ +++..+++...|...+.||+||+|.|+ .|+++|.||.+||.+||.|+|.+.
T Consensus 36 ~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~l 109 (168)
T 3kpa_A 36 TARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPEL 109 (168)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccc
Confidence 4799999999964 244455666789999999999999999 999999999999999999999995
Q ss_pred -CccccccCCCcEeccCCCCCCCCcc
Q 036649 76 -MFHPNIYADGSICLDILQNQWSPIY 100 (110)
Q Consensus 76 -i~Hpnv~~~G~icl~~l~~~W~p~~ 100 (110)
.+|||++.+|+|||+++ |+|++
T Consensus 110 dgkt~kmYr~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 110 EGKTVKMYRGGKICMTTH---FFPLW 132 (168)
T ss_dssp TTTCSSEETTTEECCCTT---HHHHH
T ss_pred cCcCccccCCCcEEeccc---cchhh
Confidence 89999999999999998 76654
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.81 E-value=1.1e-19 Score=120.15 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhCCC---CCeEEeeCCCCcceEEEEEECCCCCCCCCCE---EEEEEecCCCCCCCCCEEEEec------
Q 036649 7 KRLMRDFKRLQQDPP---AGISGAPQDNNIMLWNAVIFGPDDTPWDGGT---FKLTLQFTEDYPNKPPTVRFVS------ 74 (110)
Q Consensus 7 ~Rl~~E~~~l~~~~~---~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~---f~~~i~fp~~YP~~pP~v~f~t------ 74 (110)
+|..+|+..+.+.-+ +...+...++...++-+.+.|.-..+|+|+. |.+.|-||++||++||.|.|..
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 567778877765322 1223344566666777777777778999998 8899999999999999997754
Q ss_pred -c---Cc-cccccCCCcEeccCCCCCCCC-cccHHHHHhhhC
Q 036649 75 -R---MF-HPNIYADGSICLDILQNQWSP-IYDVAAILTSIQ 110 (110)
Q Consensus 75 -~---i~-Hpnv~~~G~icl~~l~~~W~p-~~~i~~il~~i~ 110 (110)
+ ++ |||||.+|+||+++|. +|+| +.++.++|.+|+
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~ 151 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELM 151 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHH
Confidence 1 77 9999999999999995 6999 579999998874
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.62 E-value=4.8e-16 Score=101.06 Aligned_cols=76 Identities=25% Similarity=0.518 Sum_probs=65.8
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEE--EEecCCCCCCCCCEEEEecc------CccccccCCCcEeccCCCCCCCC-c
Q 036649 29 QDNNIMLWNAVIFGPDDTPWDGGTFKL--TLQFTEDYPNKPPTVRFVSR------MFHPNIYADGSICLDILQNQWSP-I 99 (110)
Q Consensus 29 ~~~~~~~w~~~i~gp~~t~y~g~~f~~--~i~fp~~YP~~pP~v~f~t~------i~Hpnv~~~G~icl~~l~~~W~p-~ 99 (110)
...++..|.++|. .+|+|+.|.+ .|-||++||++||.| |.++ ..|||||.+|+||++.|.+ |++ .
T Consensus 49 ~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~ 122 (146)
T 3obq_A 49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQ 122 (146)
T ss_dssp TTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTT
T ss_pred ChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCC
Confidence 3468999999996 5899999985 889999999999999 7765 5899999999999999965 998 7
Q ss_pred ccHHHHHhhhC
Q 036649 100 YDVAAILTSIQ 110 (110)
Q Consensus 100 ~~i~~il~~i~ 110 (110)
.++.+++.+++
T Consensus 123 snL~~ll~~l~ 133 (146)
T 3obq_A 123 SDLLGLIQVMI 133 (146)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 78999987763
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.0035 Score=38.95 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEec
Q 036649 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS 74 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t 74 (110)
..+...|+..|+.-=+..+.+. ++....+.+.+....+..-+.-.+.+.|.+|++||..||.+.+.+
T Consensus 12 ~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 12 GEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 3566788888875433444442 223456666665322222234478899999999999999998765
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.82 E-value=0.016 Score=35.79 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCC--CCcceEEEEEECCCCCCC--CCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 7 KRLMRDFKRLQQDPPAGISGAPQD--NNIMLWNAVIFGPDDTPW--DGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~--~~~~~w~~~i~gp~~t~y--~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
.+...|+..|+.-=+..+.+.... .+...+.+.+..+.+..- ..-.+.+.|.+|++||..+|.|...+.
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 356788888875433445443222 234445555542222111 124788999999999999999988763
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.03 Score=35.04 Aligned_cols=68 Identities=10% Similarity=0.195 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCC------CCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 7 KRLMRDFKRLQQDPPAGISGAPQD------NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~------~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
.+...|+..|+.-=+..+.+.... +....+.+.+....+ .-..-.+.+.|.+|++||..+|.|.+.+.
T Consensus 13 e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 13 EIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred HHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 456778877775433333322111 124567777763222 11234788999999999999999988653
No 59
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=96.28 E-value=0.028 Score=37.51 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEeccCccccccCCCc
Q 036649 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (110)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 86 (110)
.+|.+|+.++-=+. +.-.++++....+.+.... |....++|.++.+||.++|.+...-|. |
T Consensus 4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~------- 64 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--P------- 64 (186)
T ss_dssp CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--C-------
T ss_pred HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--C-------
Confidence 36888888883221 2223567888888886333 689999999999999999987555443 1
Q ss_pred EeccCCCCCCCCcccHHHHHhh
Q 036649 87 ICLDILQNQWSPIYDVAAILTS 108 (110)
Q Consensus 87 icl~~l~~~W~p~~~i~~il~~ 108 (110)
+ .-.|+|..++.+++..
T Consensus 65 ~-----~~~w~~~ssL~~v~~q 81 (186)
T 3zqs_A 65 F-----CASWTPQSSLISIYSQ 81 (186)
T ss_dssp C-----CCCCCTTCCHHHHHHH
T ss_pred c-----ccccCCCccHHHHHHH
Confidence 1 1259998888888764
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.63 E-value=0.11 Score=32.27 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCC-----CcceEEEEEECCCC-C-CCCCCEEEEEEecCCCCCCCCCEEEEec
Q 036649 6 KKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDD-T-PWDGGTFKLTLQFTEDYPNKPPTVRFVS 74 (110)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~gp~~-t-~y~g~~f~~~i~fp~~YP~~pP~v~f~t 74 (110)
..+...|+..|+.-=+..+.+..... ....+.+.+. +.+ + .-..-.+.+.|.||++||..+|.|.+.+
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 34567788887754333344322111 1345556664 222 1 0012478899999999999999998753
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.30 E-value=0.098 Score=32.24 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCC--CCeEEee-CCCCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEec
Q 036649 8 RLMRDFKRLQQDPP--AGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS 74 (110)
Q Consensus 8 Rl~~E~~~l~~~~~--~~~~~~~-~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t 74 (110)
....|+..|+.-=+ ..+.+.. ...+...+.+.+..... .-..-.+.+.|.+|++||..+|.|.+.+
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGF-MDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTT-TTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCC-CCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 45677777764211 1233211 11234577777763221 1112478999999999999999987653
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.96 E-value=0.062 Score=34.48 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.8
Q ss_pred EEEEEEecCCCCCCCCCEEEEecc
Q 036649 52 TFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 52 ~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
.+.++|.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999987764
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.63 E-value=0.053 Score=34.60 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCCCCCCCEEEEecc
Q 036649 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 51 ~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
-.+.+.|.+|.+||..||.|.....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred ceEEEEEECCCCCCCCCCeEEEEcc
Confidence 3688999999999999999987764
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=88.88 E-value=0.4 Score=20.88 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCe
Q 036649 4 PAKKRLMRDFKRLQQDPPAGI 24 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~ 24 (110)
+.+.||+-|+...+.+++.|.
T Consensus 5 seldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccCCCCCC
Confidence 356899999999999998874
No 65
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=61.84 E-value=8.2 Score=25.89 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCCEEEEEEecCCCCCC-----CCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYPN-----KPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP~-----~pP~v~f~ 73 (110)
+.|.|.|+-.+|--||. .||.|+|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 46899999999999998 89999986
No 66
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=47.67 E-value=11 Score=23.62 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=24.1
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.+. +.--|+++..+|..|+++|.++
T Consensus 43 ~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 75 (157)
T 3pft_A 43 EPPLVAFAVQNSSTTWPKLKDLPSLGISVLGEA 75 (157)
T ss_dssp TTTEEEEEEETTCSSHHHHTTSSCEEEEECBTT
T ss_pred CCcEEEEEECCCCchHHHHHhCCEEEEEECCHH
Confidence 67888775 3467899999999999999654
No 67
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=46.65 E-value=58 Score=21.22 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=29.3
Q ss_pred CCcceEEEEEECCCCCCCCCCEEEEEEecCCCCCCCCCEEEEecc
Q 036649 31 NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (110)
Q Consensus 31 ~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 75 (110)
+.-.+|.+.+.|+++.--..-.=++.+.|.+.||. |.-.+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 45678999999987643334566788889999974 44434333
No 68
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=44.64 E-value=14 Score=25.29 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCCEEEEEEecCCCCC-------CCCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYP-------NKPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP-------~~pP~v~f~ 73 (110)
+.|.|.|+-.+|--|| ..||.|+|.
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~ 165 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHIHFS 165 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceEEEE
Confidence 4599999999999998 479999986
No 69
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=44.52 E-value=15 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCCCCC-------CCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYPN-------KPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP~-------~pP~v~f~ 73 (110)
.|.|.|+=.+|--||. .||.|+|.
T Consensus 134 ~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~ 164 (238)
T 3t63_M 134 DGYYSFRTIKPGPAPWRNGPNDWRPAHIYFG 164 (238)
T ss_dssp TSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CceEEEEEECCcCccCCCCCCCCcCCeEEEE
Confidence 5899999999999986 79999987
No 70
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=42.88 E-value=15 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=20.9
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|+-.+|--|| ..||.|+|.
T Consensus 188 ~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~ 229 (312)
T 2xsu_A 188 NGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYF 229 (312)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEE
Confidence 489999999999998 568999886
No 71
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=42.21 E-value=16 Score=26.10 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|+-.+|--|| ..||.|+|.
T Consensus 184 ~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~ 225 (311)
T 2azq_A 184 EGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFF 225 (311)
T ss_dssp TCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEE
Confidence 489999999999998 459999986
No 72
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=41.67 E-value=16 Score=25.77 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=21.4
Q ss_pred CCCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
+.|.|.|+-.+|--|| ..||.|+|.
T Consensus 183 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 225 (293)
T 1tmx_A 183 PDGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFM 225 (293)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEE
Confidence 4689999999999998 459999986
No 73
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=41.32 E-value=18 Score=24.03 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=21.2
Q ss_pred CEEEEEEecCCCCCCC-----CCEEEEe
Q 036649 51 GTFKLTLQFTEDYPNK-----PPTVRFV 73 (110)
Q Consensus 51 ~~f~~~i~fp~~YP~~-----pP~v~f~ 73 (110)
|.|.|+=.+|--||.. ||.|+|.
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~ 129 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINIS 129 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEE
Confidence 8999999999999987 8999886
No 74
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=39.82 E-value=18 Score=25.50 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCCCCC------------------CCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYPN------------------KPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP~------------------~pP~v~f~ 73 (110)
.|.|.|+=.+|--||. .||.|+|.
T Consensus 181 ~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 222 (290)
T 3n9t_A 181 DGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFM 222 (290)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CceEEEEEeCCCCcCCCCCCcHHHHHHhccCCCCcCceEEEE
Confidence 4899999999999994 59999886
No 75
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=38.71 E-value=20 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=20.6
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|+-.+|-.|| ..||.|+|.
T Consensus 154 ~G~y~F~TI~Pg~Y~~p~dGp~G~ll~~~grh~~RpaHIH~~ 195 (254)
T 2boy_A 154 NGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWI 195 (254)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CceEEEEEECCccccCCCCCcHHHHHHhcccccCCCceEEEE
Confidence 489999999999887 468999986
No 76
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=38.69 E-value=20 Score=25.61 Aligned_cols=24 Identities=17% Similarity=0.620 Sum_probs=20.9
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|+-.+|--|| ..||.|+|.
T Consensus 187 ~G~y~F~TI~Pg~Yp~p~dgp~g~lL~~~grh~~RpaHIHf~ 228 (311)
T 1dmh_A 187 NGQYRVRTILPAGYGCPPEGPTQQLLNQLGRHGNRPAHIHYF 228 (311)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECSEEEEE
T ss_pred CceEEEEEEcCCcccCCCCCcHHHHHHhcccCCCCCceEEEE
Confidence 489999999999997 459999986
No 77
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=38.50 E-value=72 Score=19.99 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=31.1
Q ss_pred cceEE--EEEECCCCCCCC-CCEEEEEEecCCCCCCCCCEEEEeccCc
Q 036649 33 IMLWN--AVIFGPDDTPWD-GGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (110)
Q Consensus 33 ~~~w~--~~i~gp~~t~y~-g~~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (110)
..+|. +.+.|++|.... .-.=++.+.+.+.|+. |...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 46998 899999887543 3566688888898874 6666666544
No 78
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=37.59 E-value=29 Score=16.89 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhh
Q 036649 4 PAKKRLMRDFKRLQQ 18 (110)
Q Consensus 4 ~~~~Rl~~E~~~l~~ 18 (110)
+..+|+..|++.+.+
T Consensus 28 ~~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 28 SKIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 457899999998763
No 79
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=37.14 E-value=19 Score=20.76 Aligned_cols=13 Identities=54% Similarity=0.779 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 036649 4 PAKKRLMRDFKRL 16 (110)
Q Consensus 4 ~~~~Rl~~E~~~l 16 (110)
..+||+++|++-|
T Consensus 62 sQLKRvQRdlrGL 74 (87)
T 2rf4_B 62 SQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCC
Confidence 4579999998765
No 80
>2ecu_A Flavin reductase (HPAC) of 4-hydroxyphenylacetate monooxygnease; flavin diffusible, two-component monooxyge oxidoreductase; HET: 1PG 12P; 1.30A {Thermus thermophilus} PDB: 2ecr_A* 2ed4_A*
Probab=35.83 E-value=9.6 Score=23.68 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=24.6
Q ss_pred CCCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
..||.|.+. +.--|+++..+|..|+++|.++
T Consensus 40 ~~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 73 (149)
T 2ecu_A 40 LEPPLVALAVSERAKLLPVLEGAGAFTVSLLREG 73 (149)
T ss_dssp TTTTEEEEEEETTCTHHHHHHHHTEEEEEECBTT
T ss_pred CCCCEEEEEECCCChhHHHHHhCCEEEEEECcHH
Confidence 367888776 3456899999999999999755
No 81
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=35.83 E-value=20 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=20.5
Q ss_pred CCEEEEEEecCCCCC------------------CCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 73 (110)
.|.|.|+=.+|--|| ..||.|+|.
T Consensus 183 dG~y~F~TI~Pg~Yp~p~dGp~G~lL~~~grh~~RpaHIH~~ 224 (280)
T 3hhy_A 183 EGRYEITTIQPAPYQIPTDGPTGQFIEAQNGHPWRPAHLHLI 224 (280)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECSCEEEE
T ss_pred CceEEEEEECCcCcCCCCCCcHHHHHHhcCCCCCCCcEEEEE
Confidence 489999999998887 468999886
No 82
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=33.67 E-value=33 Score=23.79 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=19.7
Q ss_pred CCEEEEEEecCCCC------------------CCCCCEEEEe
Q 036649 50 GGTFKLTLQFTEDY------------------PNKPPTVRFV 73 (110)
Q Consensus 50 g~~f~~~i~fp~~Y------------------P~~pP~v~f~ 73 (110)
.|.|.|+=.+|-.| |..||.|+|.
T Consensus 151 ~G~y~F~TI~P~~Ypip~dGp~g~ll~~~gr~~~RpaHIHf~ 192 (260)
T 3th1_A 151 QGNYRVRTTMPVPYQIPYEGPTGRLLGHLGSHTWRPAHVHFK 192 (260)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHTTCCSEECCEEEEE
T ss_pred CCEEEEEEECCCCCCCCCCCcHHHHHHhcCCCCCCCCeEEEE
Confidence 48999999999777 4568899986
No 83
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=31.85 E-value=24 Score=15.57 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhh
Q 036649 6 KKRLMRDFKRLQQ 18 (110)
Q Consensus 6 ~~Rl~~E~~~l~~ 18 (110)
.|++++|+..|+.
T Consensus 12 KR~lLkeyY~L~~ 24 (26)
T 2c5k_P 12 RRLLLREFYNLEN 24 (26)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhc
Confidence 4778899988864
No 84
>4hx6_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.89A {Streptomyces globisporus}
Probab=31.30 E-value=13 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=24.2
Q ss_pred CCCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
..||.|.|. +.--|.||..+|..|+++|.++
T Consensus 57 ~~PPlv~v~i~~~~~T~~~i~~~g~F~Vnvl~~~ 90 (185)
T 4hx6_A 57 LSPPLVLICVGKDAVMHQRLTALPTFAVSVLEAG 90 (185)
T ss_dssp TTTTEEEEEEETTSHHHHHHHHSCEEEEEECBTT
T ss_pred CCCCEEEEEECCCcHHHHHHHHCCeEEEEECCHH
Confidence 468888875 3446889999999999999654
No 85
>2r0x_A Possible flavin reductase; split barrel-like, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE SO4; 1.06A {Haemophilus somnus 129PT}
Probab=31.21 E-value=12 Score=23.44 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=23.9
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.+. +.--|+++..+|..|+++|.++
T Consensus 44 ~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 76 (158)
T 2r0x_A 44 SPPTLLVCINSNARAYEHFVKNRVLMVNTLTAE 76 (158)
T ss_dssp TTEEEEEEEETTSTTHHHHHHHCEEEEEECBTT
T ss_pred CCCEEEEEeCCCChHHHHHHhCCEEEEEeCCHH
Confidence 57887765 3456899999999999999654
No 86
>2qck_A Flavin reductase domain protein; YP_831077.1, flavin reducta domain, structural genomics, joint center for structural GE JCSG; 1.90A {Arthrobacter SP}
Probab=30.42 E-value=15 Score=23.28 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=24.0
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.+. +.--|+++..+|..|+++|.++
T Consensus 49 ~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 81 (167)
T 2qck_A 49 QPPRFTFNMARSSSSWPAIANTTHIGVHMLGLD 81 (167)
T ss_dssp TTEEEEEEEETTSTTHHHHHHCCEEEEEECBGG
T ss_pred CCCEEEEEECCCCchHHHHHhCCeEEEEECcHH
Confidence 67888775 3566899999999999999643
No 87
>2d37_A Hypothetical NADH-dependent FMN oxidoreductase; flavin reductase; HET: FMN NAD; 1.70A {Sulfolobus tokodaii} PDB: 2d36_A* 2d38_A*
Probab=28.67 E-value=26 Score=22.46 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=23.7
Q ss_pred CCCCEEEEe---ccCccccccCCCcEeccCCC
Q 036649 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQ 93 (110)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~ 93 (110)
..||.|.+. +.--|++|..+|..|+++|.
T Consensus 60 ~~PPlv~v~i~~~~~T~~~i~~sg~F~Vnvl~ 91 (176)
T 2d37_A 60 LNPPLVSFFADRMKGNDIPYKESKYFVVNFTD 91 (176)
T ss_dssp TTTTEEEEEEEGGGTTTHHHHTCSEEEEEEEC
T ss_pred CCCCEEEEEECCCchHHHHHHhCCeEEEEchh
Confidence 468988775 35678999999999999986
No 88
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=28.26 E-value=92 Score=18.07 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=19.3
Q ss_pred CCCEEEEEEecCCCCCCCCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYPNKPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP~~pP~v~f~ 73 (110)
.+..+...|.|+..|+ .+|+|.+-
T Consensus 27 g~R~~~~~V~F~~~F~-~~P~V~v~ 50 (101)
T 2ccv_A 27 NTRELAKNITFASPYC-RPPVVLLS 50 (101)
T ss_dssp SCEEEEEEEECSSCCS-SCCEEEEE
T ss_pred cceEEEEEeEeCcccC-CCCEEEEE
Confidence 3457888999999998 48998775
No 89
>1yoa_A Putative flavoprotein; HB8, FAD, structural genomics, riken structura genomics/proteomics initiative, RSGI, unknown function; HET: FAD FMN; 1.90A {Thermus thermophilus} SCOP: b.45.1.2 PDB: 1wgb_A*
Probab=27.32 E-value=13 Score=23.24 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.+. +.--|+|+..+|..|+++|.++
T Consensus 42 ~Pp~v~v~i~~~~~t~~~i~~~~~f~Vnvl~~~ 74 (159)
T 1yoa_A 42 QPPLVAVGLKRDSHLHALVERTGKLALMTLAHD 74 (159)
T ss_dssp TTTEEEEEEESSSHHHHHHHHHCEEEEEECBTT
T ss_pred CCCEEEEEECCCCchHHHHHhCCeEEEEECchh
Confidence 57887765 3445889999999999999654
No 90
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=26.68 E-value=45 Score=23.07 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=20.7
Q ss_pred CCCEEEEEEecCCCCCC-------------------CCCEEEEe
Q 036649 49 DGGTFKLTLQFTEDYPN-------------------KPPTVRFV 73 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP~-------------------~pP~v~f~ 73 (110)
+.|.|.|+=.+|--||. .||.|+|.
T Consensus 155 ~~G~y~F~TI~Pg~Yp~p~dgp~G~ll~a~~grh~~RpaHIHf~ 198 (257)
T 3o5u_A 155 EDGSIEFHSIRPVPYEIPKAGPTGQLMNSYLGRHSWRPAHIHIR 198 (257)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHTTTSSCCEECCCEEEE
T ss_pred CCceEEEEEECCCCcCCCCCCchhhhhhhhccCCCCCCceEEEE
Confidence 35899999999999963 57899886
No 91
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=26.49 E-value=47 Score=14.17 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHh
Q 036649 5 AKKRLMRDFKRLQ 17 (110)
Q Consensus 5 ~~~Rl~~E~~~l~ 17 (110)
-+++|.+|+++-+
T Consensus 9 lqkkirkelkqrq 21 (26)
T 1m46_B 9 LQKKIRKELKQRQ 21 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678888988654
No 92
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=26.31 E-value=42 Score=17.59 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=9.7
Q ss_pred CCEEEEEEecCCCCCC
Q 036649 50 GGTFKLTLQFTEDYPN 65 (110)
Q Consensus 50 g~~f~~~i~fp~~YP~ 65 (110)
|..|+- .+|++||.
T Consensus 43 Gk~fR~--k~pddy~~ 56 (56)
T 3kxt_A 43 GKYFRH--KLPDDYPI 56 (56)
T ss_dssp CCEEEE--ECCTTCCC
T ss_pred CcEeee--eCcCcCCC
Confidence 455554 68999984
No 93
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=24.93 E-value=13 Score=15.96 Aligned_cols=8 Identities=50% Similarity=1.132 Sum_probs=3.6
Q ss_pred EeccCccc
Q 036649 72 FVSRMFHP 79 (110)
Q Consensus 72 f~t~i~Hp 79 (110)
|..+.|||
T Consensus 12 fserpyhp 19 (26)
T 2jrw_A 12 FSERPYHP 19 (26)
T ss_dssp CCSSSCCS
T ss_pred cccCCCCC
Confidence 34444554
No 94
>1usc_A Putative styrene monooxygenase small component; FMN-binding protein, structural genomics, riken structural genomics/proteomics initiative; HET: FMN; 1.24A {Thermus thermophilus} SCOP: b.45.1.2 PDB: 1usf_A*
Probab=24.79 E-value=13 Score=23.74 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=24.2
Q ss_pred CCCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
..||.|.+. +.--|+|+..+|..|+++|.++
T Consensus 45 ~~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnil~~~ 78 (178)
T 1usc_A 45 ADPPLFGVSISPKRFTHGLLLKARRFSASFHPFG 78 (178)
T ss_dssp TTTTEEEEEECTTSHHHHHHHHHCEEEEEECBGG
T ss_pred CCCCEEEEEECCCchHHHHHHHCCeEEEEeCCHH
Confidence 468888775 3445789999999999999754
No 95
>3bnk_A Flavoredoxin; protein-FMN complex, electron transport; HET: FMN; 2.05A {Methanosarcina acetivorans}
Probab=24.55 E-value=17 Score=23.55 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=23.6
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.+. +.--++|+..+|..|++++.++
T Consensus 43 ~PP~v~v~i~~~s~T~~~i~~~~~F~Vnil~~~ 75 (196)
T 3bnk_A 43 NPPMLGVGVNKSHYTPEGIAENGSFSVNFPYSG 75 (196)
T ss_dssp TTTEEEEEEETTSSHHHHHHHHTEEEEEECBGG
T ss_pred CCCEEEEEECCcchHHHHHHHCCeEEEEECCHH
Confidence 67888765 3456889999999999999654
No 96
>1i0r_A Conserved hypothetical protein; six stranded antiparallel beta-barrel, FMN and NADP+ binding domain, oxidoreductase; HET: FMN; 1.50A {Archaeoglobus fulgidus} SCOP: b.45.1.2 PDB: 1i0s_A*
Probab=24.01 E-value=13 Score=23.61 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQW 96 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~W 96 (110)
.||.|.+. +.--|+++..+|..|+++|.++.
T Consensus 38 ~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~~ 71 (169)
T 1i0r_A 38 KPVQIAVCLNKENDTHNAVKESGAFGVSVLELET 71 (169)
T ss_dssp TTTEEEEEEETTSHHHHHHHHHSEEEEEEEBTTC
T ss_pred CCCEEEEEECCCchhHHHHHhCCEEEEEeCChhH
Confidence 67888775 34458899999999999997654
No 97
>3e4v_A NADH:FMN oxidoreductase like protein; YP_544701.1, structural genomics, joint center for structural genom JCSG; HET: MSE FMN; 1.40A {Methylobacillus flagellatus KT}
Probab=23.38 E-value=20 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=23.0
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.|. +.--|.|+..+|..|++++.++
T Consensus 46 ~PPlv~v~i~~~~~t~~~i~~~g~F~Vnvl~~~ 78 (186)
T 3e4v_A 46 EPPLVGAIIGPWDYSHQALSETGECVLAVPTVD 78 (186)
T ss_dssp TTTEEEEECCTTSTHHHHHHHHCEEEEEECCGG
T ss_pred CCCEEEEEEcChhHHHHHHHHCCeEEEEeCCHH
Confidence 67888775 2345789999999999999643
No 98
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=22.73 E-value=35 Score=24.17 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=24.1
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.+. +.--|.++..+|..|+++|.++
T Consensus 58 ~PPlv~v~i~~~s~T~~~i~~sg~F~VnvL~~~ 90 (321)
T 3rh7_A 58 DPPLLLVCLAKSSRNYESMTSAGRFAINVLSET 90 (321)
T ss_dssp TTTEEEEEEETTCSSHHHHHHCSEEEEEECBTT
T ss_pred CCCEEEEEECCcchHHHHHHhCCeEEEEECCHH
Confidence 67888775 3456889999999999999654
No 99
>1rz1_A Phenol 2-hydroxylase component B; flavin, NAD, oxidoreductase; HET: FAD NAD; 2.10A {Geobacillus thermoglucosidasius} SCOP: b.45.1.2 PDB: 1rz0_A*
Probab=21.69 E-value=16 Score=22.83 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=23.3
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.+. +.--|.|+..+|..|++++.++
T Consensus 42 ~Pp~v~v~i~~~s~T~~~i~~~~~F~Vnvl~~~ 74 (161)
T 1rz1_A 42 NPKLVLVSIGEKAKMLEKIQQSKKYAVNILSQD 74 (161)
T ss_dssp TTTEEEEEEETTCHHHHHHHHHCEEEEEECBGG
T ss_pred CCCEEEEEeCCCCchHHHHhhCCcEEEEECCHH
Confidence 67887765 3445889999999999999654
No 100
>3cb0_A 4-hydroxyphenylacetate 3-monooxygenase; corrin reductase, COBR, six-stranded anti-parallel beta- barrel, oxidoreductase; HET: FMN; 1.60A {Brucella melitensis}
Probab=21.14 E-value=21 Score=22.64 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
.||.|.+. ..--|.|+..+|..|++++.++
T Consensus 55 ~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 87 (173)
T 3cb0_A 55 NPPTILICLQKIHEENRIFIENGVFAINTLAGP 87 (173)
T ss_dssp TTEEEEEEEESSSGGGHHHHHHTEEEEEECBGG
T ss_pred CCCEEEEEeCCCchHHHHHhhCCEEEEEeCCHH
Confidence 67877765 3456899999999999999754
No 101
>3nfw_A Flavin reductase-like, FMN-binding protein; seattle structural genomics center for infectious disease, S mycobacterium; 1.60A {Mycobacterium thermoresistibile}
Probab=20.38 E-value=17 Score=24.29 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=23.9
Q ss_pred CCCCEEEEe---ccCccccccCCCcEeccCCCCC
Q 036649 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (110)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (110)
..||.|.|. +.--|.||..+|.+|+++|.++
T Consensus 68 ~dPPlv~v~v~~~s~T~~~I~~sg~F~VniL~~~ 101 (210)
T 3nfw_A 68 LDPPLVLFCPTKVSRSWKAIEASGRFCVNILHEK 101 (210)
T ss_dssp TTTTEEEECCBTTCHHHHHHHHHCEEEEEECBGG
T ss_pred CCCCEEEEEECCCchHHHHHHHCCeEEEEECCHH
Confidence 367888876 2345789999999999999654
No 102
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=20.13 E-value=1.6e+02 Score=17.86 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCCC
Q 036649 5 AKKRLMRDFKRLQQDPPAGISGAPQDNN 32 (110)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~ 32 (110)
-.+.|..||.++.+.+...++++..+..
T Consensus 32 lS~~Lid~La~i~~~~~e~fTle~i~s~ 59 (122)
T 1u9d_A 32 LVPTLLNELSSLLSTARNAFTFELINTQ 59 (122)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEECCCC
T ss_pred HhHHHHHHHHHHHCCCcccEEEEEeeeE
Confidence 3577899999999999999988765543
No 103
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=20.01 E-value=44 Score=19.66 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=14.9
Q ss_pred CCCEEEEEEecCCCCCCC
Q 036649 49 DGGTFKLTLQFTEDYPNK 66 (110)
Q Consensus 49 ~g~~f~~~i~fp~~YP~~ 66 (110)
.|....+.|.||++|..+
T Consensus 79 ~Ge~~~v~i~fP~~Yg~~ 96 (113)
T 1hxv_A 79 VNQKKTLALTFPSDYHVK 96 (113)
T ss_dssp SSEEEEECCCCCTTSSSS
T ss_pred CCCEEEEEEeCchhhCcC
Confidence 468888999999999865
Done!