Query 036650
Match_columns 334
No_of_seqs 183 out of 1427
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4av3_A K(+)-stimulated pyropho 10.6 1.3E+03 0.043 23.7 11.7 25 124-148 371-395 (735)
2 2zy9_A Mg2+ transporter MGTE; 8.5 3.9E+02 0.013 25.4 5.2 58 83-140 408-467 (473)
3 3llq_A Aquaporin Z 2; aquapori 7.9 6.8E+02 0.023 21.8 6.1 20 83-102 62-81 (256)
4 2l9u_A Receptor tyrosine-prote 6.4 3.8E+02 0.013 16.2 2.4 12 281-292 19-30 (40)
5 3j1r_A Archaeal adhesion filam 5.8 4.6E+02 0.016 14.6 3.1 15 278-292 9-23 (26)
6 2lat_A Dolichyl-diphosphooligo 5.4 5.7E+02 0.02 15.6 2.8 18 315-332 7-24 (37)
7 3arc_M Photosystem II reaction 5.0 4.3E+02 0.015 16.1 2.0 15 97-111 8-22 (36)
8 1vf5_F Protein PET M; photosyn 4.5 6.8E+02 0.023 15.0 3.6 20 248-267 9-28 (35)
9 2k21_A Potassium voltage-gated 4.4 5.7E+02 0.019 20.2 2.9 30 120-149 50-79 (138)
10 1rkl_A Dolichyl-diphosphooligo 4.2 6.5E+02 0.022 15.2 2.5 17 316-332 8-24 (36)
No 1
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=10.60 E-value=1.3e+03 Score=23.65 Aligned_cols=25 Identities=8% Similarity=0.099 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 036650 124 AFMLASAGYLLTMFGDCIINFVIKQ 148 (334)
Q Consensus 124 a~~l~~~Gf~l~~lle~i~~~~~~~ 148 (334)
.+.+.++|.....++-.+.++|...
T Consensus 371 ~f~~~~iGlv~g~lI~~iTEYYTs~ 395 (735)
T 4av3_A 371 PWFSAIIGIFSGILIGFWAEYYTSY 395 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHheeeecCC
Confidence 3566778999888888887777643
No 2
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=8.51 E-value=3.9e+02 Score=25.42 Aligned_cols=58 Identities=16% Similarity=0.061 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccC-CCCCcH-HHHHHHHHHHHHHHHHH
Q 036650 83 ESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLT-SKSYPF-AFMLASAGYLLTMFGDC 140 (334)
Q Consensus 83 ~~~l~~~~~faaGvlL~~a~lhlLPea~e~~~~~~-~~~yp~-a~~l~~~Gf~l~~lle~ 140 (334)
.-.+....+.-..++++..+=-++|=....+.-.+ ...-|+ +.+.=..|+++.+.+-.
T Consensus 408 ~~~~~v~~a~~~~~~~a~~~g~~~p~~~~~~~~DPa~~s~p~itt~~D~~g~~~~~~~a~ 467 (473)
T 2zy9_A 408 LLLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVAR 467 (473)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666667777766654321 122342 23333455555554443
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=7.85 E-value=6.8e+02 Score=21.85 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 036650 83 ESFLLLGTQFAGGVFLGTSM 102 (334)
Q Consensus 83 ~~~l~~~~~faaGvlL~~a~ 102 (334)
..++....++|-+|++++-.
T Consensus 62 ~~~l~iala~Glav~~~i~~ 81 (256)
T 3llq_A 62 IGFTGVALAFGLTVLTMAYA 81 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhe
Confidence 35666667777777776544
No 4
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.39 E-value=3.8e+02 Score=16.18 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 036650 281 SMGLACGVFIYV 292 (334)
Q Consensus 281 l~a~aaG~flYv 292 (334)
..-+-+|+|+|-
T Consensus 19 if~~lg~tflyw 30 (40)
T 2l9u_A 19 IFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhCceeEEE
Confidence 344567888884
No 5
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=5.81 E-value=4.6e+02 Score=14.63 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 036650 278 YAISMGLACGVFIYV 292 (334)
Q Consensus 278 ~~il~a~aaG~flYv 292 (334)
.-+..+++++.++|.
T Consensus 9 lLIviav~aaVllyl 23 (26)
T 3j1r_A 9 LLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 446678888888886
No 6
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=5.36 E-value=5.7e+02 Score=15.57 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 036650 315 FKFLAVLSGVGVIAVVMI 332 (334)
Q Consensus 315 ~~~l~~~lG~~~m~~l~~ 332 (334)
...++.++|...|.++..
T Consensus 7 L~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 7 LAIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778889988887754
No 7
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=4.99 E-value=4.3e+02 Score=16.07 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=9.8
Q ss_pred HHHHHHHHhhHhHHH
Q 036650 97 FLGTSMMHFLSDSNE 111 (334)
Q Consensus 97 lL~~a~lhlLPea~e 111 (334)
+++++++-++|.++-
T Consensus 8 fiAt~Lfi~iPt~FL 22 (36)
T 3arc_M 8 LIATALFVLVPSVFL 22 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777777776653
No 8
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=4.54 E-value=6.8e+02 Score=15.03 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=15.3
Q ss_pred HHHHHhHHHHHHHHHHHHhc
Q 036650 248 SFAFAISSPIGVGIGIAIDA 267 (334)
Q Consensus 248 ~~~fsl~tPlG~~IG~~i~~ 267 (334)
+.+....+++|.++|+.+.+
T Consensus 9 A~i~~~LvLvGla~Gf~LLk 28 (35)
T 1vf5_F 9 ALLSFGLIFVGWGLGVLLLK 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhe
Confidence 44556788999999998865
No 9
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=4.36 E-value=5.7e+02 Score=20.18 Aligned_cols=30 Identities=7% Similarity=0.196 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036650 120 SYPFAFMLASAGYLLTMFGDCIINFVIKQG 149 (334)
Q Consensus 120 ~yp~a~~l~~~Gf~l~~lle~i~~~~~~~~ 149 (334)
++-.-++++++||+-++.+-.++.....++
T Consensus 50 ~~~ylYIL~vmgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 50 KLEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 344457788888888888777776655443
No 10
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=4.23 E-value=6.5e+02 Score=15.21 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 036650 316 KFLAVLSGVGVIAVVMI 332 (334)
Q Consensus 316 ~~l~~~lG~~~m~~l~~ 332 (334)
..++.++|...|.++..
T Consensus 8 ~~lan~lG~~~~~LIvl 24 (36)
T 1rkl_A 8 NSLAITFGIVMMTLIVI 24 (36)
T ss_dssp GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678889888887754
Done!