Query 036650
Match_columns 334
No_of_seqs 183 out of 1427
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 06:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036650.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036650hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 8.1 2.1E+02 0.015 21.6 4.7 55 84-138 111-167 (173)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 7.9 1.5E+02 0.011 16.3 2.5 17 317-333 6-22 (34)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 6.7 1.4E+02 0.01 16.6 2.0 15 97-111 8-22 (36)
4 d1rkla_ f.23.30.1 (A:) Oligosa 4.0 3.2E+02 0.023 14.8 2.3 16 318-333 10-25 (36)
5 d1xl4a2 f.14.1.1 (A:23-138) In 3.0 6.8E+02 0.05 16.4 4.5 41 290-330 65-105 (116)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 3.0 4.2E+02 0.03 13.8 3.1 17 187-203 8-24 (32)
7 d1jb0j_ f.23.18.1 (J:) Subunit 2.9 5.1E+02 0.037 14.6 2.9 26 273-300 10-35 (41)
8 d1ppjd2 f.23.11.1 (D:196-241) 2.7 5.1E+02 0.037 14.9 2.6 13 49-61 3-15 (46)
9 d1vf5c3 f.23.23.1 (C:250-286) 2.6 5.4E+02 0.039 14.2 3.6 19 86-104 6-24 (37)
10 d1rh5b_ f.23.28.1 (B:) Preprot 2.3 5.9E+02 0.043 15.4 2.6 14 318-331 28-41 (56)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=8.09 E-value=2.1e+02 Score=21.59 Aligned_cols=55 Identities=16% Similarity=0.104 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccCC-CCCc-HHHHHHHHHHHHHHHH
Q 036650 84 SFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTS-KSYP-FAFMLASAGYLLTMFG 138 (334)
Q Consensus 84 ~~l~~~~~faaGvlL~~a~lhlLPea~e~~~~~~~-~~yp-~a~~l~~~Gf~l~~ll 138 (334)
-.+....+.-..+.+++.+=-++|--.+.++-.+. ..-| .+...=..|+++.+.+
T Consensus 111 l~~vi~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~itti~Di~g~~iyf~i 167 (173)
T d2yvxa3 111 LLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSV 167 (173)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34555566667777788777888888887764321 2224 2223334455555444
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.86 E-value=1.5e+02 Score=16.26 Aligned_cols=17 Identities=35% Similarity=0.780 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 036650 317 FLAVLSGVGVIAVVMIW 333 (334)
Q Consensus 317 ~l~~~lG~~~m~~l~~w 333 (334)
.++.+.|.+++.+++++
T Consensus 6 lv~tv~G~~vi~~vG~F 22 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLF 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeee
Confidence 46778888888888763
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.73 E-value=1.4e+02 Score=16.62 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=9.4
Q ss_pred HHHHHHHHhhHhHHH
Q 036650 97 FLGTSMMHFLSDSNE 111 (334)
Q Consensus 97 lL~~a~lhlLPea~e 111 (334)
+++++++-++|.++-
T Consensus 8 ~iAt~LFilvPt~FL 22 (36)
T d2axtm1 8 LIATALFVLVPSVFL 22 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666677776653
No 4
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.98 E-value=3.2e+02 Score=14.76 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 036650 318 LAVLSGVGVIAVVMIW 333 (334)
Q Consensus 318 l~~~lG~~~m~~l~~w 333 (334)
+++..|+..|.++.++
T Consensus 10 ~~i~fgi~mmtliviy 25 (36)
T d1rkla_ 10 LAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 5678898888887663
No 5
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=3.04 E-value=6.8e+02 Score=16.40 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcccCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 036650 290 IYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVV 330 (334)
Q Consensus 290 lYva~~ellp~~~~~~~~~~~~~~~~~~l~~~lG~~~m~~l 330 (334)
+|-++.-+..-+|-+-.+.+...|....+..+.|+.+.+.+
T Consensus 65 ~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~ 105 (116)
T d1xl4a2 65 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVA 105 (116)
T ss_dssp HHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35555555544442212222234566666677777666544
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.02 E-value=4.2e+02 Score=13.83 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 036650 187 ILALCFHSVFEGIAIGV 203 (334)
Q Consensus 187 ~~al~~Hs~~eGlalGv 203 (334)
..-++|--+|.|..+|+
T Consensus 8 aa~lsfglifvgwglga 24 (32)
T d2e74f1 8 AALLSFGLIFVGWGLGV 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhHHHH
Confidence 44456666777777775
No 7
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=2.86 E-value=5.1e+02 Score=14.58 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036650 273 IADWIYAISMGLACGVFIYVAINHLIAK 300 (334)
Q Consensus 273 ~~~~~~~il~a~aaG~flYva~~ellp~ 300 (334)
++..+..+-+++.||.++= ++-..|.
T Consensus 10 tAPVla~~w~~~tAG~lIE--iNRFfPD 35 (41)
T d1jb0j_ 10 TAPVLAAIWMTITAGILIE--FNRFYPD 35 (41)
T ss_dssp BHHHHHHHHHHHHHHHHHH--HHHHSCC
T ss_pred hhHHHHHHHHHHHHHHHHH--HHhhCch
Confidence 3556666778888887753 3445544
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.71 E-value=5.1e+02 Score=14.91 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=6.7
Q ss_pred cccchhHHHHHHH
Q 036650 49 LHAKGLILVKIWC 61 (334)
Q Consensus 49 ~~~~~l~~~ki~~ 61 (334)
.+++..+..|+..
T Consensus 3 ~d~RK~mG~Kv~~ 15 (46)
T d1ppjd2 3 HDHRKRMGLKMLL 15 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444555556644
No 9
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.57 E-value=5.4e+02 Score=14.18 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036650 86 LLLGTQFAGGVFLGTSMMH 104 (334)
Q Consensus 86 l~~~~~faaGvlL~~a~lh 104 (334)
+..+..|-+.|+++-.++-
T Consensus 6 v~gl~~F~~~v~laQi~lV 24 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQLMLI 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556666666555543
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.32 E-value=5.9e+02 Score=15.35 Aligned_cols=14 Identities=7% Similarity=0.301 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 036650 318 LAVLSGVGVIAVVM 331 (334)
Q Consensus 318 l~~~lG~~~m~~l~ 331 (334)
....+|+.+|..++
T Consensus 28 ~v~~iG~~i~G~IG 41 (56)
T d1rh5b_ 28 KVTALGISLLGIIG 41 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45567777777765
Done!