Query 036652
Match_columns 240
No_of_seqs 272 out of 1659
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 3.9E-39 8.4E-44 271.4 4.0 158 1-158 1-187 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 3.8E-34 8.2E-39 207.8 4.2 77 2-80 1-77 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 4.1E-31 8.9E-36 194.5 4.7 76 2-78 1-76 (83)
4 smart00432 MADS MADS domain. 100.0 1.5E-30 3.3E-35 178.9 3.9 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 1.2E-29 2.5E-34 174.6 3.6 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 2.8E-27 6.1E-32 157.8 -2.2 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.9 5.5E-21 1.2E-25 145.4 11.1 99 71-170 1-99 (100)
8 KOG0015 Regulator of arginine 99.8 1E-19 2.3E-24 158.9 4.6 77 2-78 63-146 (338)
9 COG5068 ARG80 Regulator of arg 99.4 5.3E-14 1.2E-18 128.3 3.1 61 1-61 81-141 (412)
10 PF06005 DUF904: Protein of un 91.4 2.8 6.1E-05 29.8 8.7 50 117-171 1-50 (72)
11 PF06698 DUF1192: Protein of u 86.8 1.2 2.7E-05 30.5 3.9 32 108-139 12-43 (59)
12 cd07429 Cby_like Chibby, a nuc 84.1 1.7 3.7E-05 33.4 4.0 23 149-171 75-97 (108)
13 PF01166 TSC22: TSC-22/dip/bun 80.3 4.3 9.4E-05 27.7 4.4 25 142-166 17-41 (59)
14 KOG4797 Transcriptional regula 80.3 8.6 0.00019 29.6 6.5 41 127-167 48-88 (123)
15 PRK10884 SH3 domain-containing 78.6 40 0.00088 28.8 11.0 21 88-108 91-111 (206)
16 PRK04098 sec-independent trans 78.0 0.88 1.9E-05 37.3 0.6 77 43-130 15-94 (158)
17 PF10584 Proteasome_A_N: Prote 76.0 0.47 1E-05 26.3 -1.1 13 44-56 4-16 (23)
18 PF06156 DUF972: Protein of un 75.3 24 0.00051 27.0 7.8 48 119-171 7-54 (107)
19 PRK13169 DNA replication intia 75.2 24 0.00053 27.2 7.8 48 119-171 7-54 (110)
20 PHA03162 hypothetical protein; 74.4 30 0.00065 27.5 8.2 58 83-140 13-74 (135)
21 PHA03155 hypothetical protein; 74.1 35 0.00076 26.5 8.3 58 83-140 8-65 (115)
22 PF05812 Herpes_BLRF2: Herpesv 74.0 27 0.00059 27.3 7.8 57 84-140 4-64 (118)
23 COG2433 Uncharacterized conser 73.8 47 0.001 33.0 11.1 53 120-172 450-507 (652)
24 PF11559 ADIP: Afadin- and alp 71.4 50 0.0011 26.3 10.1 112 48-173 16-128 (151)
25 PF07106 TBPIP: Tat binding pr 70.2 23 0.0005 28.9 7.2 89 44-145 46-137 (169)
26 smart00338 BRLZ basic region l 67.7 36 0.00077 23.1 7.1 39 132-174 16-54 (65)
27 TIGR02338 gimC_beta prefoldin, 67.2 21 0.00046 27.1 6.0 46 124-170 60-105 (110)
28 PF10504 DUF2452: Protein of u 65.7 40 0.00087 27.7 7.5 43 118-160 28-73 (159)
29 PF00170 bZIP_1: bZIP transcri 64.2 42 0.00091 22.7 7.1 38 132-173 16-53 (64)
30 PF03980 Nnf1: Nnf1 ; InterPr 63.4 61 0.0013 24.3 8.9 47 113-172 60-106 (109)
31 PRK11637 AmiB activator; Provi 62.7 1.3E+02 0.0028 28.3 11.6 78 86-172 50-129 (428)
32 PHA02592 52 DNA topisomerase I 60.7 71 0.0015 30.6 9.4 29 43-75 299-327 (439)
33 KOG0971 Microtubule-associated 60.7 1.8E+02 0.0039 30.7 12.4 86 86-171 328-428 (1243)
34 PF07716 bZIP_2: Basic region 60.5 45 0.00098 21.8 6.7 37 132-172 15-51 (54)
35 PRK10884 SH3 domain-containing 60.2 88 0.0019 26.7 9.1 21 85-105 95-115 (206)
36 PRK15422 septal ring assembly 59.6 65 0.0014 23.4 8.4 43 117-164 1-43 (79)
37 TIGR02894 DNA_bind_RsfA transc 59.3 1E+02 0.0022 25.4 12.1 59 114-172 77-137 (161)
38 PRK11637 AmiB activator; Provi 58.0 1.5E+02 0.0033 27.8 11.2 79 87-174 44-124 (428)
39 PRK09343 prefoldin subunit bet 56.8 91 0.002 24.2 8.3 43 128-171 68-110 (121)
40 KOG1962 B-cell receptor-associ 56.7 78 0.0017 27.4 8.1 52 118-169 156-209 (216)
41 KOG4797 Transcriptional regula 56.1 22 0.00047 27.4 4.1 33 135-168 64-96 (123)
42 cd00187 TOP4c DNA Topoisomeras 55.3 51 0.0011 31.6 7.5 60 7-75 257-328 (445)
43 COG3074 Uncharacterized protei 54.7 75 0.0016 22.6 8.4 45 117-166 1-45 (79)
44 PF10211 Ax_dynein_light: Axon 53.9 58 0.0013 27.3 6.9 11 64-74 93-103 (189)
45 PF04645 DUF603: Protein of un 53.8 1.1E+02 0.0024 25.6 8.1 25 121-145 139-163 (181)
46 PF09726 Macoilin: Transmembra 53.5 62 0.0013 32.9 8.1 87 87-173 457-565 (697)
47 PF08702 Fib_alpha: Fibrinogen 53.4 97 0.0021 25.0 7.8 30 48-77 7-36 (146)
48 PF14645 Chibby: Chibby family 53.3 22 0.00048 27.6 3.9 24 148-171 73-96 (116)
49 PRK00888 ftsB cell division pr 52.7 52 0.0011 24.9 5.8 34 141-174 29-62 (105)
50 COG4467 Regulator of replicati 52.4 99 0.0022 23.8 7.1 48 119-171 7-54 (114)
51 PF06156 DUF972: Protein of un 52.2 98 0.0021 23.6 7.3 34 141-174 17-50 (107)
52 PF09744 Jnk-SapK_ap_N: JNK_SA 52.1 1.3E+02 0.0029 24.6 9.9 29 143-171 86-114 (158)
53 PF08317 Spc7: Spc7 kinetochor 51.7 1.9E+02 0.0041 26.3 12.6 62 112-173 201-264 (325)
54 KOG0709 CREB/ATF family transc 51.7 15 0.00033 35.1 3.3 29 146-174 286-314 (472)
55 smart00340 HALZ homeobox assoc 51.6 40 0.00088 21.5 4.1 25 149-173 8-32 (44)
56 PF07888 CALCOCO1: Calcium bin 50.5 2.5E+02 0.0054 27.8 11.3 21 149-169 216-236 (546)
57 PF09278 MerR-DNA-bind: MerR, 49.9 57 0.0012 21.7 5.2 49 116-165 14-62 (65)
58 PF04977 DivIC: Septum formati 49.9 62 0.0013 22.3 5.6 36 143-178 21-56 (80)
59 COG0139 HisI Phosphoribosyl-AM 49.3 9 0.0002 29.5 1.1 38 16-53 49-95 (111)
60 PF10226 DUF2216: Uncharacteri 48.7 1.6E+02 0.0034 25.0 8.4 91 64-167 18-129 (195)
61 PF08614 ATG16: Autophagy prot 47.6 1.6E+02 0.0036 24.4 9.6 46 125-170 135-182 (194)
62 KOG4643 Uncharacterized coiled 46.8 58 0.0012 34.3 6.6 48 127-174 281-329 (1195)
63 smart00787 Spc7 Spc7 kinetocho 45.9 2.3E+02 0.0051 25.7 11.3 73 101-173 183-259 (312)
64 PF01502 PRA-CH: Phosphoribosy 45.9 7 0.00015 28.1 0.1 37 17-53 18-63 (75)
65 cd01109 HTH_YyaN Helix-Turn-He 45.5 98 0.0021 23.3 6.4 53 116-169 57-109 (113)
66 PF04849 HAP1_N: HAP1 N-termin 44.6 31 0.00068 31.4 4.0 26 147-172 161-186 (306)
67 PF04849 HAP1_N: HAP1 N-termin 44.4 2.5E+02 0.0054 25.6 11.0 90 83-172 160-267 (306)
68 TIGR03752 conj_TIGR03752 integ 44.2 3.1E+02 0.0067 26.6 12.0 71 87-170 70-140 (472)
69 TIGR01069 mutS2 MutS2 family p 43.5 2.7E+02 0.0059 28.6 11.0 51 119-169 538-588 (771)
70 PF09432 THP2: Tho complex sub 43.1 56 0.0012 25.9 4.7 16 58-73 34-49 (132)
71 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.8 1.6E+02 0.0035 23.0 10.3 29 142-170 101-129 (132)
72 PF02183 HALZ: Homeobox associ 42.8 89 0.0019 20.0 5.5 34 139-172 5-38 (45)
73 COG0165 ArgH Argininosuccinate 42.4 1.8E+02 0.004 28.0 9.0 81 90-172 55-143 (459)
74 PF07106 TBPIP: Tat binding pr 41.7 1.9E+02 0.0041 23.4 8.3 56 85-141 111-166 (169)
75 PF05529 Bap31: B-cell recepto 41.7 2E+02 0.0043 23.8 8.3 53 119-171 124-186 (192)
76 KOG4603 TBP-1 interacting prot 41.3 2.1E+02 0.0047 24.0 8.3 94 37-143 46-142 (201)
77 PF12925 APP_E2: E2 domain of 41.3 2.2E+02 0.0048 24.1 11.5 93 63-173 7-101 (193)
78 TIGR02449 conserved hypothetic 40.8 1.2E+02 0.0027 21.1 7.1 47 121-172 1-47 (65)
79 PF11365 DUF3166: Protein of u 40.0 1E+02 0.0022 23.2 5.6 34 140-173 9-42 (96)
80 PF07888 CALCOCO1: Calcium bin 40.0 3.2E+02 0.0069 27.0 10.3 23 87-109 140-162 (546)
81 COG2433 Uncharacterized conser 39.9 2.9E+02 0.0062 27.7 9.9 73 90-173 422-494 (652)
82 COG4917 EutP Ethanolamine util 39.9 20 0.00043 28.7 1.8 26 35-60 59-84 (148)
83 PRK13729 conjugal transfer pil 39.8 94 0.002 30.1 6.6 30 142-171 93-122 (475)
84 PF14009 DUF4228: Domain of un 39.6 26 0.00057 28.0 2.6 33 40-74 14-46 (181)
85 PRK13169 DNA replication intia 37.7 1.7E+02 0.0038 22.5 6.7 31 142-172 18-48 (110)
86 PRK00409 recombination and DNA 37.3 4.4E+02 0.0095 27.2 11.4 50 120-169 544-593 (782)
87 KOG0804 Cytoplasmic Zn-finger 36.7 3.2E+02 0.0069 26.4 9.4 36 133-168 376-411 (493)
88 cd04769 HTH_MerR2 Helix-Turn-H 36.4 1.2E+02 0.0027 22.9 5.8 54 116-169 56-109 (116)
89 PF01166 TSC22: TSC-22/dip/bun 36.3 42 0.0009 22.9 2.6 24 145-168 13-36 (59)
90 KOG4637 Adaptor for phosphoino 36.2 35 0.00076 32.0 3.0 41 33-75 367-412 (464)
91 cd01107 HTH_BmrR Helix-Turn-He 35.4 1.5E+02 0.0033 22.1 6.1 48 116-169 58-105 (108)
92 TIGR02209 ftsL_broad cell divi 34.7 1.2E+02 0.0027 21.3 5.2 32 141-172 26-57 (85)
93 smart00338 BRLZ basic region l 34.6 1.3E+02 0.0029 20.2 5.2 28 142-169 36-63 (65)
94 KOG3759 Uncharacterized RUN do 34.6 3.6E+02 0.0079 26.2 9.4 52 113-171 198-252 (621)
95 PF14915 CCDC144C: CCDC144C pr 34.4 2.2E+02 0.0047 25.9 7.6 77 88-170 4-80 (305)
96 cd04776 HTH_GnyR Helix-Turn-He 34.4 2.1E+02 0.0046 21.8 7.3 56 116-171 55-112 (118)
97 KOG4643 Uncharacterized coiled 34.2 4.6E+02 0.0099 28.1 10.7 30 142-171 526-555 (1195)
98 PF06005 DUF904: Protein of un 33.9 1.7E+02 0.0037 20.7 5.7 32 139-170 11-42 (72)
99 PF07851 TMPIT: TMPIT-like pro 33.5 3.5E+02 0.0077 24.9 9.0 71 90-170 4-74 (330)
100 PF04880 NUDE_C: NUDE protein, 33.5 97 0.0021 25.7 4.9 43 122-169 2-47 (166)
101 cd04779 HTH_MerR-like_sg4 Heli 32.9 2.5E+02 0.0053 22.2 8.1 52 116-167 56-109 (134)
102 PF10226 DUF2216: Uncharacteri 32.5 1.7E+02 0.0037 24.8 6.3 30 139-168 48-77 (195)
103 KOG3004 Meiotic chromosome se 32.2 48 0.001 30.0 3.2 55 2-73 53-107 (305)
104 TIGR02231 conserved hypothetic 31.6 4.8E+02 0.01 25.2 10.4 46 115-161 122-167 (525)
105 PF06785 UPF0242: Uncharacteri 31.6 4.1E+02 0.0089 24.7 9.0 44 127-171 130-173 (401)
106 TIGR01950 SoxR redox-sensitive 31.5 1.2E+02 0.0026 24.1 5.2 54 116-169 57-110 (142)
107 COG1382 GimC Prefoldin, chaper 31.5 2.5E+02 0.0055 21.9 9.3 40 131-171 70-109 (119)
108 cd04787 HTH_HMRTR_unk Helix-Tu 31.3 2E+02 0.0043 22.4 6.3 54 116-170 57-110 (133)
109 PF08687 ASD2: Apx/Shroom doma 31.3 1.5E+02 0.0032 26.5 6.0 44 127-174 78-121 (264)
110 cd04770 HTH_HMRTR Helix-Turn-H 31.0 2E+02 0.0043 21.8 6.2 53 116-169 57-109 (123)
111 PF14775 NYD-SP28_assoc: Sperm 30.9 1.7E+02 0.0038 19.8 5.3 23 149-171 36-58 (60)
112 COG0216 PrfA Protein chain rel 30.8 3.6E+02 0.0077 25.1 8.5 25 142-166 79-103 (363)
113 PRK09822 lipopolysaccharide co 30.7 20 0.00043 31.5 0.5 40 20-60 119-161 (269)
114 PF11629 Mst1_SARAH: C termina 30.4 1.1E+02 0.0024 20.1 3.8 17 114-130 5-21 (49)
115 PF05470 eIF-3c_N: Eukaryotic 30.3 5.1E+02 0.011 25.9 10.2 114 44-171 18-133 (595)
116 PF04999 FtsL: Cell division p 30.0 1.6E+02 0.0034 21.5 5.2 32 141-172 37-68 (97)
117 PF13758 Prefoldin_3: Prefoldi 29.7 1.8E+02 0.0038 22.1 5.4 19 84-102 6-24 (99)
118 PF15397 DUF4618: Domain of un 29.5 3.9E+02 0.0085 23.7 8.4 36 139-174 186-221 (258)
119 PF10473 CENP-F_leu_zip: Leuci 29.4 3E+02 0.0065 22.1 8.9 47 121-172 67-113 (140)
120 PF10186 Atg14: UV radiation r 29.4 3.7E+02 0.0081 23.2 10.7 11 51-61 7-17 (302)
121 cd01108 HTH_CueR Helix-Turn-He 29.3 2.2E+02 0.0048 21.9 6.2 53 116-169 57-109 (127)
122 PF09941 DUF2173: Uncharacteri 29.3 39 0.00084 26.0 1.8 28 32-60 3-30 (108)
123 TIGR02168 SMC_prok_B chromosom 29.2 6.7E+02 0.014 26.2 11.5 12 48-59 140-151 (1179)
124 PF12252 SidE: Dot/Icm substra 29.2 4.6E+02 0.0099 28.4 9.7 70 83-153 1124-1193(1439)
125 PF10224 DUF2205: Predicted co 28.9 2.3E+02 0.0049 20.6 6.7 28 144-171 35-62 (80)
126 PHA01750 hypothetical protein 28.9 2.1E+02 0.0045 20.1 7.1 19 147-165 50-68 (75)
127 KOG4360 Uncharacterized coiled 28.8 2.1E+02 0.0046 28.0 6.9 84 86-169 162-263 (596)
128 KOG3478 Prefoldin subunit 6, K 28.7 2.8E+02 0.0061 21.5 9.7 46 125-171 63-108 (120)
129 PRK10227 DNA-binding transcrip 28.3 2.1E+02 0.0046 22.5 6.0 53 116-169 57-109 (135)
130 KOG4005 Transcription factor X 28.3 98 0.0021 27.3 4.3 30 141-170 106-135 (292)
131 PF04912 Dynamitin: Dynamitin 28.2 1.7E+02 0.0037 27.2 6.3 17 87-103 98-114 (388)
132 PLN03128 DNA topoisomerase 2; 28.1 4.3E+02 0.0094 28.6 9.8 28 44-75 961-988 (1135)
133 PRK05561 DNA topoisomerase IV 28.0 6E+02 0.013 26.1 10.5 107 44-161 337-459 (742)
134 PF09755 DUF2046: Uncharacteri 27.8 4.7E+02 0.01 23.9 9.6 36 126-161 108-150 (310)
135 KOG0930 Guanine nucleotide exc 27.8 2E+02 0.0042 26.2 6.2 43 114-165 8-50 (395)
136 KOG0977 Nuclear envelope prote 27.4 6.2E+02 0.013 25.1 11.6 21 86-106 109-129 (546)
137 TIGR01478 STEVOR variant surfa 27.3 1.7E+02 0.0037 26.5 5.7 45 7-73 25-69 (295)
138 TIGR03007 pepcterm_ChnLen poly 27.2 4.5E+02 0.0098 24.9 9.2 46 64-109 140-187 (498)
139 PF05769 DUF837: Protein of un 27.2 3.7E+02 0.0079 22.4 7.5 25 153-177 70-94 (181)
140 PRK10265 chaperone-modulator p 27.0 92 0.002 23.3 3.5 78 32-110 10-98 (101)
141 PF09158 MotCF: Bacteriophage 26.9 22 0.00047 27.1 0.1 53 5-74 19-72 (103)
142 COG3883 Uncharacterized protei 26.7 3.2E+02 0.0068 24.4 7.3 57 86-159 55-111 (265)
143 PRK15002 redox-sensitivie tran 26.6 1.8E+02 0.004 23.5 5.5 54 116-169 67-120 (154)
144 cd04785 HTH_CadR-PbrR-like Hel 26.6 2.5E+02 0.0054 21.6 6.1 53 116-169 57-109 (126)
145 PRK09514 zntR zinc-responsive 26.5 2.2E+02 0.0048 22.4 5.8 54 116-169 58-111 (140)
146 TIGR02894 DNA_bind_RsfA transc 26.0 3.8E+02 0.0082 22.1 9.5 30 142-171 121-150 (161)
147 cd01282 HTH_MerR-like_sg3 Heli 25.9 2.3E+02 0.005 21.3 5.7 50 117-167 57-109 (112)
148 PF09755 DUF2046: Uncharacteri 25.6 5.2E+02 0.011 23.6 10.2 23 149-171 257-279 (310)
149 PHA02414 hypothetical protein 25.6 2.4E+02 0.0051 21.4 5.3 45 118-163 37-81 (111)
150 PF10112 Halogen_Hydrol: 5-bro 25.5 46 0.001 27.8 1.8 16 63-78 137-152 (199)
151 PF15254 CCDC14: Coiled-coil d 25.5 7.8E+02 0.017 25.6 11.4 56 117-173 427-482 (861)
152 PF05325 DUF730: Protein of un 25.4 3E+02 0.0065 20.8 5.9 61 35-103 19-84 (122)
153 TIGR00606 rad50 rad50. This fa 25.3 9.2E+02 0.02 26.4 12.8 55 116-170 821-881 (1311)
154 TIGR02051 MerR Hg(II)-responsi 25.3 2.5E+02 0.0055 21.5 5.9 51 116-169 56-106 (124)
155 COG4831 Roadblock/LC7 domain [ 25.3 76 0.0016 24.0 2.7 30 31-61 4-33 (109)
156 TIGR02047 CadR-PbrR Cd(II)/Pb( 25.0 2.8E+02 0.0061 21.4 6.1 53 116-169 57-109 (127)
157 TIGR03185 DNA_S_dndD DNA sulfu 24.9 7E+02 0.015 24.8 12.3 25 87-111 395-419 (650)
158 PLN02372 violaxanthin de-epoxi 24.6 6.3E+02 0.014 24.2 10.3 64 92-169 363-426 (455)
159 KOG0241 Kinesin-like protein [ 24.4 4.3E+02 0.0093 28.4 8.5 65 93-173 367-431 (1714)
160 PF07407 Seadorna_VP6: Seadorn 24.3 2.7E+02 0.0059 25.8 6.5 37 112-160 24-60 (420)
161 PF15188 CCDC-167: Coiled-coil 24.2 2.9E+02 0.0064 20.2 6.5 36 116-163 32-67 (85)
162 TIGR02043 ZntR Zn(II)-responsi 24.0 2.4E+02 0.0052 21.9 5.6 54 116-169 58-111 (131)
163 PF06937 EURL: EURL protein; 23.6 1.1E+02 0.0025 27.3 3.9 37 102-138 204-240 (285)
164 PF11232 Med25: Mediator compl 23.6 52 0.0011 26.9 1.7 36 37-72 109-150 (152)
165 cd04783 HTH_MerR1 Helix-Turn-H 23.6 3E+02 0.0065 21.0 6.0 50 117-169 58-107 (126)
166 PF15254 CCDC14: Coiled-coil d 23.5 8.5E+02 0.018 25.3 10.4 22 124-145 498-519 (861)
167 cd01110 HTH_SoxR Helix-Turn-He 23.4 2.5E+02 0.0054 22.1 5.6 54 116-169 57-110 (139)
168 PF03670 UPF0184: Uncharacteri 23.3 3E+02 0.0066 20.1 7.2 51 114-172 20-73 (83)
169 KOG3119 Basic region leucine z 23.3 2.8E+02 0.0061 24.6 6.5 26 149-174 218-243 (269)
170 cd01106 HTH_TipAL-Mta Helix-Tu 23.1 3.1E+02 0.0067 20.1 5.9 15 116-130 57-71 (103)
171 PF10018 Med4: Vitamin-D-recep 23.1 4.4E+02 0.0094 21.8 9.3 54 119-174 4-57 (188)
172 cd08888 SRPBCC_PITPNA-B_like L 22.8 98 0.0021 27.5 3.4 26 112-137 232-257 (258)
173 TIGR02044 CueR Cu(I)-responsiv 22.7 3.2E+02 0.0068 21.0 6.0 53 116-169 57-109 (127)
174 PF04873 EIN3: Ethylene insens 22.6 29 0.00062 32.3 0.0 37 25-61 53-90 (354)
175 KOG1853 LIS1-interacting prote 22.6 5.6E+02 0.012 22.9 9.9 78 94-173 102-184 (333)
176 PF12548 DUF3740: Sulfatase pr 22.5 1.4E+02 0.003 24.2 3.9 42 126-168 94-135 (145)
177 PF04521 Viral_P18: ssRNA posi 22.4 1.1E+02 0.0024 24.0 3.2 23 18-40 4-26 (120)
178 KOG4252 GTP-binding protein [S 22.2 47 0.001 28.3 1.2 29 38-74 90-118 (246)
179 KOG3584 cAMP response element 21.9 1.6E+02 0.0034 26.8 4.5 35 134-172 304-338 (348)
180 PF02416 MttA_Hcf106: mttA/Hcf 21.8 8.5 0.00019 25.6 -2.7 29 43-75 12-40 (53)
181 PRK10824 glutaredoxin-4; Provi 21.7 94 0.002 24.0 2.8 29 44-72 16-44 (115)
182 smart00415 HSF heat shock fact 21.6 77 0.0017 23.7 2.2 39 37-75 12-51 (105)
183 cd02973 TRX_GRX_like Thioredox 21.6 1.2E+02 0.0026 19.8 3.0 27 43-74 1-27 (67)
184 smart00502 BBC B-Box C-termina 21.5 3.3E+02 0.0072 19.9 9.5 18 154-171 73-90 (127)
185 cd04790 HTH_Cfa-like_unk Helix 21.4 2.9E+02 0.0064 22.6 5.8 47 116-169 58-104 (172)
186 PF04697 Pinin_SDK_N: pinin/SD 21.3 1.2E+02 0.0025 24.2 3.1 35 85-119 5-39 (134)
187 PHA02109 hypothetical protein 21.3 4E+02 0.0088 22.4 6.5 23 108-130 179-203 (233)
188 PF07058 Myosin_HC-like: Myosi 21.2 6.5E+02 0.014 23.1 8.5 75 86-171 10-84 (351)
189 PF10491 Nrf1_DNA-bind: NLS-bi 21.2 1.1E+02 0.0023 26.4 3.2 47 26-74 35-88 (214)
190 PRK03918 chromosome segregatio 21.1 8.9E+02 0.019 24.7 10.5 89 86-174 622-715 (880)
191 PLN03230 acetyl-coenzyme A car 20.8 5.8E+02 0.012 24.5 8.2 72 55-134 40-119 (431)
192 PF04201 TPD52: Tumour protein 20.8 2.2E+02 0.0048 23.5 4.8 83 83-172 29-114 (162)
193 PLN03128 DNA topoisomerase 2; 20.6 39 0.00085 36.2 0.5 29 17-46 988-1017(1135)
194 PF00170 bZIP_1: bZIP transcri 20.5 2.8E+02 0.006 18.5 5.6 24 145-168 39-62 (64)
195 PTZ00108 DNA topoisomerase 2-l 20.3 8.3E+02 0.018 27.2 10.2 115 45-168 963-1154(1388)
196 PRK15067 ethanolamine ammonia 20.3 44 0.00095 31.9 0.7 15 52-70 9-23 (461)
197 cd04786 HTH_MerR-like_sg7 Heli 20.0 3E+02 0.0065 21.5 5.4 53 117-171 58-110 (131)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=3.9e-39 Score=271.40 Aligned_cols=158 Identities=42% Similarity=0.630 Sum_probs=128.2
Q ss_pred CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCCCC
Q 036652 1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIP 80 (240)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~ 80 (240)
|||+||+|+||+|.++|||||||||.||||||+||||||||+||||||||+|++|+|||++.++..|++||...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999976799999999987654322
Q ss_pred C--CCchHH----------------------HHHHHHHHHHHHHHHHH---hhhccCCCCCCCCCH-HHHHHHHHHHHHH
Q 036652 81 E--HDSREQ----------------------IFNELAVLRKETRRLQL---SMRRYTGEDLGSIPY-DDLDQLEHELESS 132 (240)
Q Consensus 81 ~--~~~~e~----------------------l~~el~kLk~e~~~Lq~---~~R~~~GedL~~Ls~-~EL~~LE~~Le~~ 132 (240)
. .....+ .......++...+.+.. ..+++.|++|.+++. .+|..++..|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 1 111111 22333445555555553 378899999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 036652 133 VNKVRDRKNELLQQQLD-NLRRKERML 158 (240)
Q Consensus 133 L~~VR~rK~~ll~~qi~-~lkkk~~~l 158 (240)
+..+|..+...+..++. .++.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSL 187 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhc
Confidence 99999999988877765 444444333
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=3.8e-34 Score=207.75 Aligned_cols=77 Identities=68% Similarity=1.014 Sum_probs=74.5
Q ss_pred CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCCCC
Q 036652 2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIP 80 (240)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~ 80 (240)
||+||+|++|||..+|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+ +++||+||++.++.++|
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~~ 77 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSLW 77 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhccccccC
Confidence 899999999999999999999999999999999999999999999999999999999984 79999999999998877
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=4.1e-31 Score=194.53 Aligned_cols=76 Identities=47% Similarity=0.731 Sum_probs=72.5
Q ss_pred CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCC
Q 036652 2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTR 78 (240)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~ 78 (240)
||+||+|++|+|..+|+|||+|||.||||||+||||||||+||+|||||+|+.++||+++. +..++++|...+...
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 76 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSALE 76 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHhh
Confidence 8999999999999999999999999999999999999999999999999999999999865 999999999887654
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=1.5e-30 Score=178.91 Aligned_cols=59 Identities=69% Similarity=1.069 Sum_probs=58.2
Q ss_pred CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCC
Q 036652 2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60 (240)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~ 60 (240)
||+||+|++|+|..+|++||+|||.||+|||.||||||||+||+|||||+|+++.||+|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999986
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=1.2e-29 Score=174.64 Aligned_cols=59 Identities=66% Similarity=1.060 Sum_probs=58.0
Q ss_pred CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCC
Q 036652 2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60 (240)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~ 60 (240)
||+||+|++|+|...|++||+|||.||+|||.||||||||+||+|||||+|++++||+|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999985
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.92 E-value=2.8e-27 Score=157.77 Aligned_cols=51 Identities=55% Similarity=0.904 Sum_probs=46.9
Q ss_pred eEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCC
Q 036652 9 KRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59 (240)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s 59 (240)
|+|+|++.|++||+|||.||||||.|||+||||+||||||||+|+++.|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999986
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.85 E-value=5.5e-21 Score=145.42 Aligned_cols=99 Identities=42% Similarity=0.658 Sum_probs=95.7
Q ss_pred HhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 71 RLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDN 150 (240)
Q Consensus 71 Y~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~ 150 (240)
|++.++.+.|+ .+++.++.++.+|+.+++.|+..+|+++|+||++||++||..||++|+.+|.+||+||.++|.++|+.
T Consensus 1 Y~~~~~~~~~~-~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~ 79 (100)
T PF01486_consen 1 YQKQSGTDLWD-SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEE 79 (100)
T ss_pred CCcccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 78888999998 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036652 151 LRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 151 lkkk~~~l~een~~L~~~l~ 170 (240)
+++|++.|.++|..|+.++.
T Consensus 80 l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 80 LKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998874
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.78 E-value=1e-19 Score=158.88 Aligned_cols=77 Identities=39% Similarity=0.527 Sum_probs=70.3
Q ss_pred CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCc-------hhHHHHHHHHhhc
Q 036652 2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP-------FRMEQIIERRLKV 74 (240)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~-------~s~~~il~RY~~~ 74 (240)
||+||+|++|||+..|.|||||||.||||||.|||||.|++|-|+|.|.+|.+|.|+.|. .+-+.+|.-..+.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999999999999999883 2347888888887
Q ss_pred cCCC
Q 036652 75 TGTR 78 (240)
Q Consensus 75 ~~~~ 78 (240)
++..
T Consensus 143 pd~~ 146 (338)
T KOG0015|consen 143 PDTP 146 (338)
T ss_pred CCCC
Confidence 7654
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.43 E-value=5.3e-14 Score=128.27 Aligned_cols=61 Identities=41% Similarity=0.568 Sum_probs=59.7
Q ss_pred CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCc
Q 036652 1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61 (240)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~ 61 (240)
|||+||.|..|+|+.+|.|||+||+.||+|||.||+||.+.+|.|+|.|.+|+++.|++|.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~ 141 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK 141 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence 7899999999999999999999999999999999999999999999999999999999984
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.38 E-value=2.8 Score=29.85 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 117 Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
++++.|..||..+..++..|.. |..+++.|+.+...|.++|..|..+...
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4788999999999999998875 4445577888766666666666665543
No 11
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.78 E-value=1.2 Score=30.49 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=26.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036652 108 RYTGEDLGSIPYDDLDQLEHELESSVNKVRDR 139 (240)
Q Consensus 108 ~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~r 139 (240)
+..|+||+.||++||..-...|+.=+.++++-
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999998888887777766653
No 12
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=84.05 E-value=1.7 Score=33.41 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l~~ 171 (240)
..+|+|.+.|+|||+.|+.+++-
T Consensus 75 ~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999988854
No 13
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.30 E-value=4.3 Score=27.66 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMY 166 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~ 166 (240)
+++.++|..|..+...|+.||..|+
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777777776664
No 14
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=80.25 E-value=8.6 Score=29.57 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 127 HELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYR 167 (240)
Q Consensus 127 ~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~ 167 (240)
..++.++.-|+..-+-...++++.||.+++.|++.|..|..
T Consensus 48 NKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 48 NKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555666666666666666655543
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.58 E-value=40 Score=28.80 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 036652 88 IFNELAVLRKETRRLQLSMRR 108 (240)
Q Consensus 88 l~~el~kLk~e~~~Lq~~~R~ 108 (240)
+...+.+++.+++.++.++..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443
No 16
>PRK04098 sec-independent translocase; Provisional
Probab=78.00 E-value=0.88 Score=37.32 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=42.5
Q ss_pred eEEEeecCCCCccccCCCchhHHHHHHHHhhccCCC---CCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCH
Q 036652 43 IGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTR---IPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPY 119 (240)
Q Consensus 43 V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~---~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~ 119 (240)
||||||+|. |++++.. ++-..+..+++..... +...-....+..++.+.++.++.....+| ..+++
T Consensus 15 VaLlvfGP~-KLP~~~r---~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~-------~~~~~ 83 (158)
T PRK04098 15 VAIIFLGPD-KLPQAMV---DIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLK-------KKLKF 83 (158)
T ss_pred HHHhhcCch-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hccCh
Confidence 789999975 8888875 4777777777754331 11001122344555555555444444444 12566
Q ss_pred HHHHHHHHHHH
Q 036652 120 DDLDQLEHELE 130 (240)
Q Consensus 120 ~EL~~LE~~Le 130 (240)
++|.++-..+.
T Consensus 84 eel~~~~~~~~ 94 (158)
T PRK04098 84 EELDDLKITAE 94 (158)
T ss_pred HHHHHHhhhhh
Confidence 66665543333
No 17
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=76.00 E-value=0.47 Score=26.33 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=10.4
Q ss_pred EEEeecCCCCccc
Q 036652 44 GLIIFSSTGKLCQ 56 (240)
Q Consensus 44 ~lIifS~~gkl~e 56 (240)
++.+|||.|+++.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 4568999999873
No 18
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.34 E-value=24 Score=27.05 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 119 YDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 119 ~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
++.|..||++|...+..|.+-|.++ ..+-.....|.-||..|+..|.+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777765555554433322 33444444455555555555544
No 19
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.20 E-value=24 Score=27.19 Aligned_cols=48 Identities=27% Similarity=0.438 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 119 YDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 119 ~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
++.+.+||++|...+..+.+-|.++ ..+-.....|+-||..|+..+.+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888887776666554433 34555566677777777777765
No 20
>PHA03162 hypothetical protein; Provisional
Probab=74.36 E-value=30 Score=27.53 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=43.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhccCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036652 83 DSREQIFNELAVLRKETRRLQLSMRRYTGED----LGSIPYDDLDQLEHELESSVNKVRDRK 140 (240)
Q Consensus 83 ~~~e~l~~el~kLk~e~~~Lq~~~R~~~Ged----L~~Ls~~EL~~LE~~Le~~L~~VR~rK 140 (240)
...|.|..++.+|+-||..|.+.+++-.|.+ =..|+..+=..+....-.+|...-.+|
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999998766654 234788777777766666666555544
No 21
>PHA03155 hypothetical protein; Provisional
Probab=74.08 E-value=35 Score=26.45 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036652 83 DSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRK 140 (240)
Q Consensus 83 ~~~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK 140 (240)
...|.|..++.+|+-||..|.+.+++-.+.+=.-|+..+=..+....-.+|...-++|
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999998765555466888887777777777766655544
No 22
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=73.96 E-value=27 Score=27.27 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036652 84 SREQIFNELAVLRKETRRLQLSMRRYTG----EDLGSIPYDDLDQLEHELESSVNKVRDRK 140 (240)
Q Consensus 84 ~~e~l~~el~kLk~e~~~Lq~~~R~~~G----edL~~Ls~~EL~~LE~~Le~~L~~VR~rK 140 (240)
..|.|..++.+|+-||..|.+.+++-.| .+=.-|+..+=..+....-.+|...=.+|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999887 56677888887777777766666555544
No 23
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.81 E-value=47 Score=33.04 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 120 DDLDQLEHELESSVNKVR-----DRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 120 ~EL~~LE~~Le~~L~~VR-----~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
+++..|+..|+..-..++ .|+.+.+...|..|+++...-...-..|..++...
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777776666655 34556666777777777666666666666666543
No 24
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.40 E-value=50 Score=26.28 Aligned_cols=112 Identities=28% Similarity=0.372 Sum_probs=58.9
Q ss_pred ecCCCCccccC-CCchhHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHH
Q 036652 48 FSSTGKLCQYC-TEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLE 126 (240)
Q Consensus 48 fS~~gkl~e~~-s~~~s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE 126 (240)
|.+.|..+.+. .+..++..||.--...-.....+....+.+...+.++..+++.+...+..+. +++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~---------~~~~~~e 86 (151)
T PF11559_consen 16 YPSDGLLFDSAEESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLK---------EQLEELE 86 (151)
T ss_pred CCCCCccCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHH
Confidence 44555555555 1223445444432222111111123355666666666666666665554432 3455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 127 HELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 127 ~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
..+..+-...+ -+..++..+..+.+...++...+..++....
T Consensus 87 re~~~~~~~~~-----~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 87 RELASAEEKER-----QLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554433333 3445556777777888888888877776543
No 25
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.18 E-value=23 Score=28.89 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=46.6
Q ss_pred EEEeecCCCCccccCCCchhHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCC---CCCCCCHH
Q 036652 44 GLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGE---DLGSIPYD 120 (240)
Q Consensus 44 ~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~Ge---dL~~Ls~~ 120 (240)
+.|+.=..||..-||.....+. ..+. .....|..++..|++++..++...+.+..+ -...++.+
T Consensus 46 g~i~~K~~GKqkiY~~~Q~~~~-------~~s~------eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~ 112 (169)
T PF07106_consen 46 GKIVEKEYGKQKIYFANQDELE-------VPSP------EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE 112 (169)
T ss_pred CCeeeeeecceEEEeeCccccC-------CCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 4566666777777765421110 0001 122334444444444444444444333222 23456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 121 DLDQLEHELESSVNKVRDRKNELLQ 145 (240)
Q Consensus 121 EL~~LE~~Le~~L~~VR~rK~~ll~ 145 (240)
||...-..|+.-+..+.+|-..+-.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877777777777777777666553
No 26
>smart00338 BRLZ basic region leucin zipper.
Probab=67.71 E-value=36 Score=23.12 Aligned_cols=39 Identities=31% Similarity=0.476 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 132 SVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 132 ~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
+-..-|.||...+ ..|..++..|+.+|..|..++.....
T Consensus 16 aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 16 AARRSRERKKAEI----EELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777666 88999999999999999988866443
No 27
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=67.24 E-value=21 Score=27.07 Aligned_cols=46 Identities=22% Similarity=0.438 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 124 QLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 124 ~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
-++...+.++..+..|+..+ ...|+.+.++...+++.-..+...|.
T Consensus 60 lv~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 60 LVKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred hheecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665543 55666666666666666666655553
No 28
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=65.69 E-value=40 Score=27.70 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 036652 118 PYDDLDQLEHELESSVNKVRDR---KNELLQQQLDNLRRKERMLEE 160 (240)
Q Consensus 118 s~~EL~~LE~~Le~~L~~VR~r---K~~ll~~qi~~lkkk~~~l~e 160 (240)
+..||..|-++++.+..-+|++ |..+|.+||..|++.-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999976 556666666666666544444
No 29
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=64.21 E-value=42 Score=22.71 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 132 SVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 132 ~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
|-...|.||...+ +.|..++..|+.+|..|...+....
T Consensus 16 AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 16 AARRSRQRKKQYI----EELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677787776 8899999999999999988776543
No 30
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=63.39 E-value=61 Score=24.32 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 113 DLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
...+++++++ |++.-......+++.|+.+...++.+|..|...+.+.
T Consensus 60 ~~~~l~P~~~-------------i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 60 WRHSLTPEED-------------IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CCCCCChHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888765 3444455566777999999999999999999998764
No 31
>PRK11637 AmiB activator; Provisional
Probab=62.69 E-value=1.3e+02 Score=28.25 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 036652 86 EQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKN--ELLQQQLDNLRRKERMLEEENS 163 (240)
Q Consensus 86 e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~--~ll~~qi~~lkkk~~~l~een~ 163 (240)
+.++.++..+++++..++..+... ..+|..++..|...-..|..... ..+..+|+.+++++..++++-.
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~---------~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASL---------LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544432 33566666666666555554332 2233445555555555555555
Q ss_pred HHHHHHHHH
Q 036652 164 NMYRWIQEH 172 (240)
Q Consensus 164 ~L~~~l~~~ 172 (240)
.+...+...
T Consensus 121 ~~~~~l~~r 129 (428)
T PRK11637 121 AQERLLAAQ 129 (428)
T ss_pred HHHHHHHHH
Confidence 555555443
No 32
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=60.70 E-value=71 Score=30.55 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=23.9
Q ss_pred eEEEeecCCCCccccCCCchhHHHHHHHHhhcc
Q 036652 43 IGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVT 75 (240)
Q Consensus 43 V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~ 75 (240)
+-+++|+++|++..|.+ +++||+.|-...
T Consensus 299 ~Nm~~~d~~g~~~~~~~----~~~Il~~f~~~R 327 (439)
T PHA02592 299 QNITVINENGKLKVYEN----AEDLIRDFVEIR 327 (439)
T ss_pred eeEEEEecCCeeeecCC----HHHHHHHHHHHH
Confidence 66888999999999965 689999987643
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.66 E-value=1.8e+02 Score=30.66 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc------CCCCCCCCCHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHHHH
Q 036652 86 EQIFNELAVLRKETRRLQLSMRRY------TGEDLGSIPYDDLDQLEH---ELESSVNKVRDR------KNELLQQQLDN 150 (240)
Q Consensus 86 e~l~~el~kLk~e~~~Lq~~~R~~------~GedL~~Ls~~EL~~LE~---~Le~~L~~VR~r------K~~ll~~qi~~ 150 (240)
+.|+.|++.+++.++.|...+.-+ .|-|-...|--++.+||+ .|..+|-+.|+- -.+.+..+.++
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~ 407 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEK 407 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 467888888888888877654332 355666666666666665 477888777752 12223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036652 151 LRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 151 lkkk~~~l~een~~L~~~l~~ 171 (240)
.+..+..|...-..|..++.+
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~ 428 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQ 428 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555543
No 34
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=60.53 E-value=45 Score=21.84 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 132 SVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 132 ~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
+-.+-|.||...+ ..+...+..|+.+|..|..++...
T Consensus 15 AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 15 AARRSRQRKKQRE----EELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666555 788899999999999998877553
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.17 E-value=88 Score=26.74 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 036652 85 REQIFNELAVLRKETRRLQLS 105 (240)
Q Consensus 85 ~e~l~~el~kLk~e~~~Lq~~ 105 (240)
...++.++..++.+.+.+...
T Consensus 95 lp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 456788888888888887765
No 36
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=59.65 E-value=65 Score=23.36 Aligned_cols=43 Identities=23% Similarity=0.537 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSN 164 (240)
Q Consensus 117 Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~ 164 (240)
+|++=|..||..+..++..|- +|.-+|+.||.|...|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 467778999999999998875 4444557777776666665444
No 37
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.26 E-value=1e+02 Score=25.45 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 114 LGSIPYDDLDQLEHELESSVNKVRD--RKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~~L~~VR~--rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
...|++++...+-+.|......... .-.+-+..++..|+++...|+.+|..|...+..-
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999865333322 2234455667778888888888888887766543
No 38
>PRK11637 AmiB activator; Provisional
Probab=57.96 E-value=1.5e+02 Score=27.83 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 036652 87 QIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKN--ELLQQQLDNLRRKERMLEEENSN 164 (240)
Q Consensus 87 ~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~--~ll~~qi~~lkkk~~~l~een~~ 164 (240)
.++.++..+++++..++.++... -.++..++..|+..-..|..... .-+..+|+.++.++..++.+-..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~---------~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQ---------QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666555432 12444455444444444433322 22444555555555555555555
Q ss_pred HHHHHHHHHH
Q 036652 165 MYRWIQEHRA 174 (240)
Q Consensus 165 L~~~l~~~~~ 174 (240)
+...+.....
T Consensus 115 ~q~~l~~~~~ 124 (428)
T PRK11637 115 LEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 39
>PRK09343 prefoldin subunit beta; Provisional
Probab=56.78 E-value=91 Score=24.16 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 128 ELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 128 ~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
..+.+...|..|+. .+...|+.+.++...+++.-..+...|.+
T Consensus 68 d~~e~~~~l~~r~E-~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 68 DKTKVEKELKERKE-LLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555543 44567777777777777777666666644
No 40
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.74 E-value=78 Score=27.38 Aligned_cols=52 Identities=31% Similarity=0.370 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 118 PYDDLDQLEHELESSVNKVRDRK--NELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 118 s~~EL~~LE~~Le~~L~~VR~rK--~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
..+|+..|+..++..-+...... ...+..|.+.+.+.-..|-|+|..|+.++
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 35566677766665544443322 22333444444444555555555555444
No 41
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=56.11 E-value=22 Score=27.40 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 135 KVRDRKNELLQQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 135 ~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
.||+- -+.|.+||..|-.+...|++||..|+.-
T Consensus 64 AVREE-Ve~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 64 AVREE-VEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34443 4678899999999999999999888654
No 42
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=55.32 E-value=51 Score=31.57 Aligned_cols=60 Identities=22% Similarity=0.437 Sum_probs=37.1
Q ss_pred ceeEecCCCCcc-cccc---ccc-------cchhhhhh-hhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhc
Q 036652 7 AIKRIENPTTRQ-VTFS---KRR-------AGLLKKTH-ELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKV 74 (240)
Q Consensus 7 ~ik~Ien~~~Rq-vTfs---KRr-------~GL~KKA~-ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~ 74 (240)
.|.-|.+.+.|. |.|- ||. ++|+|+.. +-|+-| -+++|.++|++..| + +++||+.|-..
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~-~----l~~iL~~f~~~ 327 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL-N----LKEILQEFLDH 327 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe-C----HHHHHHHHHHH
Confidence 466677776663 3332 332 35554432 223333 57788899999888 4 68999988764
Q ss_pred c
Q 036652 75 T 75 (240)
Q Consensus 75 ~ 75 (240)
.
T Consensus 328 R 328 (445)
T cd00187 328 R 328 (445)
T ss_pred H
Confidence 3
No 43
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.75 E-value=75 Score=22.57 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMY 166 (240)
Q Consensus 117 Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~ 166 (240)
+|++=|..||..+..++..|. ++.=+|+.||.|...|..|-..++
T Consensus 1 MSlEv~ekLE~KiqqAvdTI~-----LLQmEieELKEknn~l~~e~q~~q 45 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHhHHHHHHHH
Confidence 467778888888888887664 444455666666555555444443
No 44
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=53.90 E-value=58 Score=27.32 Aligned_cols=11 Identities=0% Similarity=0.063 Sum_probs=5.6
Q ss_pred HHHHHHHHhhc
Q 036652 64 MEQIIERRLKV 74 (240)
Q Consensus 64 ~~~il~RY~~~ 74 (240)
...+|++|+..
T Consensus 93 ~~~~l~~y~~l 103 (189)
T PF10211_consen 93 YRMTLDAYQTL 103 (189)
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 45
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=53.84 E-value=1.1e+02 Score=25.56 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 121 DLDQLEHELESSVNKVRDRKNELLQ 145 (240)
Q Consensus 121 EL~~LE~~Le~~L~~VR~rK~~ll~ 145 (240)
++..|+..|...++.=-.++++|+-
T Consensus 139 ~i~slk~EL~d~iKe~e~~emeLyy 163 (181)
T PF04645_consen 139 EIESLKSELNDLIKEREIREMELYY 163 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666665566666663
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.52 E-value=62 Score=32.86 Aligned_cols=87 Identities=22% Similarity=0.345 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC----C--CCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH---H-----------
Q 036652 87 QIFNELAVLRKETRRLQLSMRRYTG----E--DLGSI--PYDDLDQLEHELESSVNKVRDRKNEL---L----------- 144 (240)
Q Consensus 87 ~l~~el~kLk~e~~~Lq~~~R~~~G----e--dL~~L--s~~EL~~LE~~Le~~L~~VR~rK~~l---l----------- 144 (240)
.+..++..++.+++.|+..+-.+.- | .|..| .+.|.+..-..||.-|..-|.+|.+- -
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r 536 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR 536 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence 4566777777777777765432211 0 12222 25566666667788888877554421 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 145 QQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 145 ~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
.+-.+.++.+.+.|+.|-+.|+.+|...+
T Consensus 537 ~e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 537 QECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13345688888888888888888886543
No 47
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=53.38 E-value=97 Score=24.96 Aligned_cols=30 Identities=7% Similarity=0.289 Sum_probs=22.9
Q ss_pred ecCCCCccccCCCchhHHHHHHHHhhccCC
Q 036652 48 FSSTGKLCQYCTEPFRMEQIIERRLKVTGT 77 (240)
Q Consensus 48 fS~~gkl~e~~s~~~s~~~il~RY~~~~~~ 77 (240)
|.+++.+=.|||....|.+.|.+|+.-...
T Consensus 7 ~~~de~~G~~CPTgC~i~~~L~k~~~~v~~ 36 (146)
T PF08702_consen 7 CCADEDFGSYCPTGCGIQDFLDKYERDVDK 36 (146)
T ss_dssp ECSSTTTTEEEE-HHHHHHHHHHHHHHHHH
T ss_pred cccCccccCCCCCcchHHHHHHHHccchHH
Confidence 445777778999888999999999885443
No 48
>PF14645 Chibby: Chibby family
Probab=53.30 E-value=22 Score=27.58 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 148 LDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 148 i~~lkkk~~~l~een~~L~~~l~~ 171 (240)
...++++.+.|+|||+.|+.+++-
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888899999998887743
No 49
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.68 E-value=52 Score=24.94 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 141 NELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 141 ~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
..-+.+++..++++...++.+|..|..++..-+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445566677777888888888888888766544
No 50
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=52.36 E-value=99 Score=23.81 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 119 YDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 119 ~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
++.+..||++|-..+..|-+-|.++ ..+-.....|.=||..|+..|.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 4567777777775555444433322 22333334444455555555533
No 51
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.15 E-value=98 Score=23.63 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 141 NELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 141 ~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
...+.+++..||+.+..|.|||..|+-+-+.-..
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688999999999999999999877655443
No 52
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=52.06 E-value=1.3e+02 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 143 LLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 143 ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
.+.++...|..++..|+++|+.|...+..
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455667778888888888888766543
No 53
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.66 E-value=1.9e+02 Score=26.26 Aligned_cols=62 Identities=29% Similarity=0.465 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 112 EDLGSIPYDDLDQLEHELESSVNKVRDRKNELL--QQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 112 edL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll--~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
..++.++.++|..+-..|...-..|.++|..+- ..+...++.++..+.++-..+..++.+.+
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999998888887776653 34566667777777777777777776544
No 54
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=51.65 E-value=15 Score=35.05 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 146 QQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 146 ~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
.+-..|++|+..|+..|..|..+|...+.
T Consensus 286 aeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 286 AENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred cCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34446788888888899888888876543
No 55
>smart00340 HALZ homeobox associated leucin zipper.
Probab=51.59 E-value=40 Score=21.48 Aligned_cols=25 Identities=36% Similarity=0.415 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
+.||+=-..|.+||.+|+.++++-.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778899999999999997754
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.46 E-value=2.5e+02 Score=27.76 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l 169 (240)
..++.++..|+++...|..+.
T Consensus 216 ~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 216 AEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555444444
No 57
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=49.94 E-value=57 Score=21.72 Aligned_cols=49 Identities=14% Similarity=0.333 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNM 165 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L 165 (240)
|+|++|+..+-.--+..-....... .++..+++.+.++...|+.--..|
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888877732222222222222 556666666666666665544444
No 58
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.87 E-value=62 Score=22.34 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 036652 143 LLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEY 178 (240)
Q Consensus 143 ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~~~~~ 178 (240)
-+..++..++++...+..+|..|..++.....++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ 56 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDY 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 355667889999999999999998888776334443
No 59
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=49.32 E-value=9 Score=29.55 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=28.7
Q ss_pred Cccccccccccch---------hhhhhhhhcccCCceEEEeecCCCC
Q 036652 16 TRQVTFSKRRAGL---------LKKTHELSVLCDAQIGLIIFSSTGK 53 (240)
Q Consensus 16 ~RqvTfsKRr~GL---------~KKA~ELsvLCda~V~lIifS~~gk 53 (240)
.+-+-||+-|+-| +-|..|+.+-||.|+-||+..+.|.
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3444567767644 4567899999999999999998663
No 60
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=48.75 E-value=1.6e+02 Score=25.05 Aligned_cols=91 Identities=18% Similarity=0.310 Sum_probs=49.1
Q ss_pred HHHHHHHHhhccCCCCCC----------CC-chHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHH-
Q 036652 64 MEQIIERRLKVTGTRIPE----------HD-SREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELES- 131 (240)
Q Consensus 64 ~~~il~RY~~~~~~~~~~----------~~-~~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~- 131 (240)
-++++.|.+..-..+..- ++ ..+..-.||..||+.|.+|+.+.+ ||++|=..|+.
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNq-------------ELRdLCCFLDdd 84 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQ-------------ELRDLCCFLDDD 84 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHcccchh
Confidence 367788877654432111 11 112233577788888888886554 33333333333
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 132 ---------SVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYR 167 (240)
Q Consensus 132 ---------~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~ 167 (240)
...+.-.--..+|.+++..+.+|.+.|+.-...|..
T Consensus 85 RqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~r 129 (195)
T PF10226_consen 85 RQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIR 129 (195)
T ss_pred HHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222223456777777777777777654444443
No 61
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.62 E-value=1.6e+02 Score=24.44 Aligned_cols=46 Identities=35% Similarity=0.346 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 036652 125 LEHELESSVNKVRDRKNELLQQQ--LDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 125 LE~~Le~~L~~VR~rK~~ll~~q--i~~lkkk~~~l~een~~L~~~l~ 170 (240)
|+..|...=+.+-.-+++++.=+ ...+..|.+.|++||..|...+-
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444433 34467888999999998877653
No 62
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=46.78 E-value=58 Score=34.34 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 127 HELESSVNKVRDRKNE-LLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 127 ~~Le~~L~~VR~rK~~-ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
+.|+.-|.+.|+|-.. -+..+|=+|++|...++.++...+.++++-+.
T Consensus 281 eMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~e 329 (1195)
T KOG4643|consen 281 EMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHE 329 (1195)
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3477777888877654 34557888888888899999888888877653
No 63
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.92 E-value=2.3e+02 Score=25.72 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=46.7
Q ss_pred HHHHhhhccC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 101 RLQLSMRRYT--GEDLGSIPYDDLDQLEHELESSVNKVRDRKNELL--QQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 101 ~Lq~~~R~~~--GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll--~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
.|+.++..+. -+++++++.++|..+...|..-...|..++..+- .++...+..++....+.-..+..++.+.+
T Consensus 183 ~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 183 ALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444432 2478889999999999998888888877766543 33455555555656666666666665443
No 64
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=45.88 E-value=7 Score=28.09 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=28.2
Q ss_pred ccccccccccchhhh---------hhhhhcccCCceEEEeecCCCC
Q 036652 17 RQVTFSKRRAGLLKK---------THELSVLCDAQIGLIIFSSTGK 53 (240)
Q Consensus 17 RqvTfsKRr~GL~KK---------A~ELsvLCda~V~lIifS~~gk 53 (240)
+-+-||+-|++|-.| +.|+.+-||.|.-|+..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 445588888888655 5799999999999999998887
No 65
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=45.49 E-value=98 Score=23.30 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++|++|+..+-......-..+. .-..++.+++..+..+...|+..-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIP-ERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888776554432211122 2235666666666666666666655555444
No 66
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.61 E-value=31 Score=31.36 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 147 QLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 147 qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
+++.|++|.+.|++||..|+.+...-
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999886543
No 67
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.45 E-value=2.5e+02 Score=25.62 Aligned_cols=90 Identities=20% Similarity=0.324 Sum_probs=54.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhccCCC--------------CCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 036652 83 DSREQIFNELAVLRKETRRLQLSMRRYTGE--------------DLGSIP--YDDLDQLEHELESSVNKVRDRKNEL--L 144 (240)
Q Consensus 83 ~~~e~l~~el~kLk~e~~~Lq~~~R~~~Ge--------------dL~~Ls--~~EL~~LE~~Le~~L~~VR~rK~~l--l 144 (240)
.+.+.|+..+..|..+|..|+.+..++..+ ++..|+ -..+..|...|............++ +
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888888888888776555432 111111 1133334444444333333333332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 145 QQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 145 ~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
..||-.+++|.+.+.-||..|...|...
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4567778889999999999998888653
No 68
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.18 E-value=3.1e+02 Score=26.59 Aligned_cols=71 Identities=15% Similarity=0.302 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 87 QIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMY 166 (240)
Q Consensus 87 ~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~ 166 (240)
.+..++..+..+|+.|..+...+.. ....+.++++.++...|.. +.++.+.|+.....++..-..|.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~---------r~~~id~~i~~av~~~~~~----~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQK---------REQSIDQQIQQAVQSETQE----LTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665543321 2234555666666655533 33445666666556666666666
Q ss_pred HHHH
Q 036652 167 RWIQ 170 (240)
Q Consensus 167 ~~l~ 170 (240)
.+|.
T Consensus 137 ~~l~ 140 (472)
T TIGR03752 137 RRLA 140 (472)
T ss_pred HHHh
Confidence 5553
No 69
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.51 E-value=2.7e+02 Score=28.62 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 119 YDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 119 ~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
..|+..+...|+..+..++++|.+++.+--+..+.-.+.+.++-+.+..++
T Consensus 538 ~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 538 LKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777775444444444444444444444443
No 70
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=43.06 E-value=56 Score=25.93 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHHHhh
Q 036652 58 CTEPFRMEQIIERRLK 73 (240)
Q Consensus 58 ~s~~~s~~~il~RY~~ 73 (240)
|+|+..+..|++.|..
T Consensus 34 ~~pP~el~~iLe~y~~ 49 (132)
T PF09432_consen 34 WNPPKELQSILEKYNT 49 (132)
T ss_pred CCCCHHHHHHHHHHcC
Confidence 4455789999999987
No 71
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.82 E-value=1.6e+02 Score=22.95 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
..|..++..++++...|.+.|+.|..+|+
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999987774
No 72
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.80 E-value=89 Score=20.01 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 139 RKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 139 rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
+=+..|....+.|+..-..|..||..|+.++...
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888999999999999999998887654
No 73
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=42.37 E-value=1.8e+02 Score=27.99 Aligned_cols=81 Identities=19% Similarity=0.107 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 90 NELAVLRKETRRLQLSMRRYTGEDLGSIPYDDL-DQLEHELES-------SVNKVRDRKNELLQQQLDNLRRKERMLEEE 161 (240)
Q Consensus 90 ~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL-~~LE~~Le~-------~L~~VR~rK~~ll~~qi~~lkkk~~~l~ee 161 (240)
++.+++-+-+..+..+++. |.-.-+-..+|. ..+|..|-. .|.--|+|=+|+-..---.++.+...+.+.
T Consensus 55 ee~~~I~~~L~~l~~e~~~--g~~~~~~~~EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~rL~lr~~~~~l~~~ 132 (459)
T COG0165 55 EEAAKILEGLEELLEEIRA--GKFELDPDDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLEL 132 (459)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCccCCCccccHHHHHHHHHHHHHhhhhchhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666655432 211111122222 233444433 444557888888877667789999999999
Q ss_pred HHHHHHHHHHH
Q 036652 162 NSNMYRWIQEH 172 (240)
Q Consensus 162 n~~L~~~l~~~ 172 (240)
+..|+.-|.+.
T Consensus 133 i~~l~~aL~~~ 143 (459)
T COG0165 133 IRILQKALLDL 143 (459)
T ss_pred HHHHHHHHHHH
Confidence 99999888664
No 74
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.74 E-value=1.9e+02 Score=23.42 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 85 REQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKN 141 (240)
Q Consensus 85 ~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~ 141 (240)
.+.|...+..|+.++..++..+..+.+ +-...+.+|...++.......+..+.||.
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777766666555 33346677777777777777766666663
No 75
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.74 E-value=2e+02 Score=23.78 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 119 YDDLDQLEHELESSVNKVR----------DRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 119 ~~EL~~LE~~Le~~L~~VR----------~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
+.+|..++..++..-+... ..+..-..++++.++++....+.+...|+.+.+.
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444332 2233445566666666666666666666666544
No 76
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=41.26 E-value=2.1e+02 Score=23.95 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=49.3
Q ss_pred cccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCC--CC
Q 036652 37 VLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGE--DL 114 (240)
Q Consensus 37 vLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~Ge--dL 114 (240)
.-|=|+.+-|+|--.||.--|.-.. |.|...+. .....|..++.+|.++...|+...+.+..| .|
T Consensus 46 Ld~La~~Gki~~K~YGKqKIY~a~Q-------DqF~~~~~------eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 46 LDQLAQQGKIKEKMYGKQKIYFADQ-------DQFDMVSD------EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred HHHHHHcCchhHHhccceeeEeecH-------HhhcCCCh------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666655444321 11111111 112334445555555555555544443332 23
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 115 -GSIPYDDLDQLEHELESSVNKVRDRKNEL 143 (240)
Q Consensus 115 -~~Ls~~EL~~LE~~Le~~L~~VR~rK~~l 143 (240)
+.|+++|++.-.+.|..-...-|.|-..+
T Consensus 113 ~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 113 SSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888777777666665443
No 77
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=41.26 E-value=2.2e+02 Score=24.15 Aligned_cols=93 Identities=11% Similarity=0.221 Sum_probs=50.4
Q ss_pred hHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHH-HHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 63 RMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKET-RRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKN 141 (240)
Q Consensus 63 s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~-~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~ 141 (240)
+..+++|.|...++.. +.++.++....+|.+.. .++... +.|..++|.... .+.+.--++-
T Consensus 7 ~~~~~~D~Y~~~~~~~----~Eh~~f~~Ak~rLe~~hr~r~~~V-------------mkeW~eaE~~~~-~l~~~DPk~A 68 (193)
T PF12925_consen 7 PTSDAVDPYFEHPDPE----NEHQRFKEAKERLEEKHRERMTKV-------------MKEWSEAEERYK-ELPKADPKKA 68 (193)
T ss_dssp ----HHHHHHHSSTTS----THHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHTTT-TSHHHHHHHH
T ss_pred CCCCCCChHhhcCCCC----chHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH-hchhhhhhhh
Confidence 3457779999988865 32344433333332221 111111 234444444444 2233333444
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQ-LDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 142 ~ll~~q-i~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
+.+... +...++++..|++|+..-+.+|.+.+
T Consensus 69 e~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H 101 (193)
T PF12925_consen 69 EQFKKEMTQRFQKTVQALEQEAAAERQQLVETH 101 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 46789999999999999999987654
No 78
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=40.79 E-value=1.2e+02 Score=21.07 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 121 EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
||..||..|+.-+.... -+..+...|+..+..+..|+..|..+.+..
T Consensus 1 ~L~~Le~kle~Li~~~~-----~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLE-----RLKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777887777665443 344455567777777777777777776543
No 79
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=40.05 E-value=1e+02 Score=23.18 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 140 KNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 140 K~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
.-++..++.+-|+++...++++|..|..+|..-.
T Consensus 9 qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 9 QLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888999999999999999999986643
No 80
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=39.99 E-value=3.2e+02 Score=27.01 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 036652 87 QIFNELAVLRKETRRLQLSMRRY 109 (240)
Q Consensus 87 ~l~~el~kLk~e~~~Lq~~~R~~ 109 (240)
.++.++++..++.+.|......+
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~L 162 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQL 162 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444444444444333
No 81
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.91 E-value=2.9e+02 Score=27.73 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 90 NELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 90 ~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
.++.++.+..++|+.+++.+..+ ++++..--..|+.-|..++.+-..- ....++.+++++++..|..+|
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~------~ee~k~eie~L~~~l~~~~r~~~~~-----~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRE------LEELKREIEKLESELERFRREVRDK-----VRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHH
Confidence 34444444445555444444332 3444444444444444444432210 112234556666667776666
Q ss_pred HHHH
Q 036652 170 QEHR 173 (240)
Q Consensus 170 ~~~~ 173 (240)
.+..
T Consensus 491 ~e~~ 494 (652)
T COG2433 491 EEKK 494 (652)
T ss_pred HHHH
Confidence 5543
No 82
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=39.86 E-value=20 Score=28.73 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=22.4
Q ss_pred hhcccCCceEEEeecCCCCccccCCC
Q 036652 35 LSVLCDAQIGLIIFSSTGKLCQYCTE 60 (240)
Q Consensus 35 LsvLCda~V~lIifS~~gkl~e~~s~ 60 (240)
++++|||+|-++|-|.+.+...|++.
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p~ 84 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPPG 84 (148)
T ss_pred HHHhhccceeeeeecccCccccCCcc
Confidence 67899999999999999988888653
No 83
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.82 E-value=94 Score=30.05 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
+++..+...++.|++.++.+|..|+.++..
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 455566678888999999999999999853
No 84
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=39.64 E-value=26 Score=28.02 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=25.6
Q ss_pred CCceEEEeecCCCCccccCCCchhHHHHHHHHhhc
Q 036652 40 DAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKV 74 (240)
Q Consensus 40 da~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~ 74 (240)
...+.-||+ ++|++-+|..| .++.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~p-v~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRP-VTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCC-cCHHHHHHHCCCC
Confidence 455555555 79999999876 6899999998655
No 85
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.67 E-value=1.7e+02 Score=22.46 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
..+..++..||..+..|.|||..|+-+-..-
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999998775443
No 86
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.30 E-value=4.4e+02 Score=27.19 Aligned_cols=50 Identities=16% Similarity=0.367 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 120 DDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 120 ~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
.++..+...|+........++.+++.+.-+..++-.+...++-..+..++
T Consensus 544 ~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 544 KEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666665444444444444444433333333
No 87
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.66 E-value=3.2e+02 Score=26.38 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 133 VNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 133 L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
...+-++|...+.+.++.+.+....++|+|+.|...
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666666777777777777777777777654
No 88
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.44 E-value=1.2e+02 Score=22.91 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+++++|+..+-...+..-...-..-..++.++.+.+.++.+.++..-+.|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777766655443221111112234555555666666666655555554444
No 89
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=36.34 E-value=42 Score=22.94 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 145 QQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 145 ~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
.++++.||.++..|++.|..|..+
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999654
No 90
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=36.24 E-value=35 Score=31.97 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=29.6
Q ss_pred hhhhcccCCce--EEEeecCCCCccccCCCc---hhHHHHHHHHhhcc
Q 036652 33 HELSVLCDAQI--GLIIFSSTGKLCQYCTEP---FRMEQIIERRLKVT 75 (240)
Q Consensus 33 ~ELsvLCda~V--~lIifS~~gkl~e~~s~~---~s~~~il~RY~~~~ 75 (240)
.-|||+||-+| |||-=.++|=- |..|- +++++++..|+..|
T Consensus 367 yalSV~~~~~V~HClIy~tatG~G--Fa~pyn~y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFG--FAEPYNLYSTLKELVLHYQHTS 412 (464)
T ss_pred eEEEEEECCceeeeEEeecccccc--ccchhHHHHHHHHHHHHHhhhh
Confidence 46999999888 77765566643 33332 57999999998865
No 91
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.39 E-value=1.5e+02 Score=22.12 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++++.|+..+-..... +.-..++.++++.+..+...++..-..|...+
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888777665442 44445566666666666666666555555443
No 92
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.67 E-value=1.2e+02 Score=21.27 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 141 NELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 141 ~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
...+..++..++++...++.+|..|+.++...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566678899999999999999999888654
No 93
>smart00338 BRLZ basic region leucin zipper.
Probab=34.63 E-value=1.3e+02 Score=20.19 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+.|..+...|+.++..|..++..|...+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555677778888888888888776654
No 94
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=34.55 E-value=3.6e+02 Score=26.22 Aligned_cols=52 Identities=17% Similarity=0.333 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 113 DLGSIPYDDLDQLEHELESSVNKVR---DRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~~L~~VR---~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
||+.||-+||+ +++++++..+- .-|.+++ +.||.++..|+.--+.|+.+..+
T Consensus 198 ~i~~lsteelr---~qVD~A~~q~VnP~k~KeQLV----~QLkTQItDLErFInFlQ~e~~e 252 (621)
T KOG3759|consen 198 DIDKLSTEELR---RQVDDALKQLVNPFKEKEQLV----DQLKTQITDLERFINFLQDEVGE 252 (621)
T ss_pred CcccccHHHHH---HHHHHHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhc
Confidence 58899998875 45666666543 3466666 78888888888877777766544
No 95
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=34.45 E-value=2.2e+02 Score=25.93 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 88 IFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYR 167 (240)
Q Consensus 88 l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~ 167 (240)
|+.+|..|+-+++.+......... --++|+..+....+..-+.|+ -..+.+..-|..+......|.-||..|..
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~-----ky~ediei~Kekn~~Lqk~lK-LneE~ltkTi~qy~~QLn~L~aENt~L~S 77 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEK-----KYLEDIEILKEKNDDLQKSLK-LNEETLTKTIFQYNGQLNVLKAENTMLNS 77 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhHHHHHHHHHHHhH
Confidence 567777777777766544322111 113444444444443333332 34456666777788888888888888888
Q ss_pred HHH
Q 036652 168 WIQ 170 (240)
Q Consensus 168 ~l~ 170 (240)
+|+
T Consensus 78 kLe 80 (305)
T PF14915_consen 78 KLE 80 (305)
T ss_pred HHH
Confidence 884
No 96
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=34.39 E-value=2.1e+02 Score=21.84 Aligned_cols=56 Identities=7% Similarity=0.151 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKV--RDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~V--R~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
+++++++..+-...+.+-... .....+++.+++..+..+...|++.-..|...+..
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666544321111 12233566777777777777777766666665543
No 97
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.23 E-value=4.6e+02 Score=28.08 Aligned_cols=30 Identities=40% Similarity=0.544 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
.++.++.+.|......+++||..|..++.-
T Consensus 526 e~~~~k~eeLe~~l~~lE~ENa~LlkqI~~ 555 (1195)
T KOG4643|consen 526 ELLSNKLEELEELLGNLEEENAHLLKQIQS 555 (1195)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444555556667777788777777754
No 98
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.94 E-value=1.7e+02 Score=20.66 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 139 RKNELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 139 rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
.|.+-..+.|..|+.++..|.++|..|...-.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~ 42 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENE 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45556667778888888888888888874443
No 99
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=33.51 E-value=3.5e+02 Score=24.91 Aligned_cols=71 Identities=27% Similarity=0.429 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 90 NELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 90 ~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+|.+.|.++-..|+...+.+.. .++|+..+...--.++++=+.|-..+. .++++-...+..+......++
T Consensus 4 eEW~eL~~efq~Lqethr~Y~q------Kleel~~lQ~~C~ssI~~QkkrLk~L~----~sLk~~~~~~~~e~~~~i~~L 73 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQ------KLEELSKLQDKCSSSISHQKKRLKELK----KSLKRCKKSLSAEERELIEKL 73 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCCChhHHHHHHHH
Confidence 4555566666666666555443 256666666666666665555433333 455554443444444444454
Q ss_pred H
Q 036652 170 Q 170 (240)
Q Consensus 170 ~ 170 (240)
+
T Consensus 74 ~ 74 (330)
T PF07851_consen 74 E 74 (330)
T ss_pred H
Confidence 4
No 100
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.47 E-value=97 Score=25.67 Aligned_cols=43 Identities=28% Similarity=0.562 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 036652 122 LDQLEHELESSVNKVRDRKNELLQQQL---DNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 122 L~~LE~~Le~~L~~VR~rK~~ll~~qi---~~lkkk~~~l~een~~L~~~l 169 (240)
|.+||..|..++.+ +-+|..+| +.|+-.+..|.+|-..|+.++
T Consensus 2 LeD~EsklN~AIER-----nalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777763 34454444 335555566666666666665
No 101
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.93 E-value=2.5e+02 Score=22.18 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELES--SVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYR 167 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~--~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~ 167 (240)
++|++|+..+-..... ........+.+.+..++..+..+.+.+.+-...|..
T Consensus 56 G~sL~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 56 RLSLAEIKDQLEEVQRSDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred CCCHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666544432 111112233445666666666666666655555543
No 102
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=32.48 E-value=1.7e+02 Score=24.78 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 139 RKNELLQQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 139 rK~~ll~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
|+-+....+|..||.-.+.|+++|..|+.-
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666777666544
No 103
>KOG3004 consensus Meiotic chromosome segregation protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.24 E-value=48 Score=30.00 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=39.6
Q ss_pred CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhh
Q 036652 2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLK 73 (240)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~ 73 (240)
||+++.+..|+--+.+..++-|-..+| +++.- + +-..||-++|.. ++.+|.+|+.
T Consensus 53 ~rKR~~~~~~~~lsa~~L~s~~Gip~l-R~~~k-----~-------~k~kgKg~e~~d----L~~llr~y~~ 107 (305)
T KOG3004|consen 53 GRKRAVRVKSPKLSAETLISEKGIPAL-RDCFK-----K-------AKFKGKGHEYID----LKELLRSYQH 107 (305)
T ss_pred cccccccccccccchhhhcCccCchHH-HHHHh-----h-------cCcCCCCCcccC----HHHHHHHHHH
Confidence 677777888888888888888888874 33211 1 124677788863 7999999986
No 104
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.60 E-value=4.8e+02 Score=25.15 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 115 GSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEE 161 (240)
Q Consensus 115 ~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~ee 161 (240)
+..++.++.++-..+...+..++.+...+ ..++..++++...|+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQLSELQNE 167 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 35688899999888888888888766433 23344444444444433
No 105
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=31.60 E-value=4.1e+02 Score=24.72 Aligned_cols=44 Identities=32% Similarity=0.439 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 127 HELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 127 ~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
++||..+...++++. .+.-|++.+++..+..+||+..|.+++.+
T Consensus 130 q~LE~li~~~~EEn~-~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 130 QHLEGLIRHLREENQ-CLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHHH-HHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 344444455555433 34446667777777777777777666654
No 106
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=31.53 E-value=1.2e+02 Score=24.13 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++|++|+..+-..+...-...-.....++.++...+..+...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888776543221111122234666667777777777777777776554
No 107
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=2.5e+02 Score=21.92 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 131 SSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 131 ~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
.++..+..|+ +.+.-+|++|.++++.++++-..|+..|..
T Consensus 70 ~~~~eL~er~-E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 70 EAVDELEERK-ETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 466778888999998888888888887744
No 108
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=31.25 E-value=2e+02 Score=22.38 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
++|++|+..+-...+..-... ....+++..++..+..+...|+.....|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVS 110 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888877765433221111 122356677777777777777776666655553
No 109
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=31.25 E-value=1.5e+02 Score=26.49 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 127 HELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 127 ~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
.........|..+|.+++ +.+++|...|+++...|...+..+..
T Consensus 78 ~~~~e~~~~l~~Kk~eLi----~~l~~kl~~L~~eqe~l~ee~~~n~~ 121 (264)
T PF08687_consen 78 DSDDENDNDLNAKKVELI----ESLSKKLEVLQEEQEALQEEIQANEA 121 (264)
T ss_dssp --------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667788999998 89999999999999999988876643
No 110
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.96 E-value=2e+02 Score=21.80 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+++++|+..+-.....+-... ....+++.++++.+..+...|+.....|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888877765443321011 12245566666666666666666655554433
No 111
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=30.93 E-value=1.7e+02 Score=19.82 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l~~ 171 (240)
..+-.....|+.+|..|+.-|.+
T Consensus 36 ~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 36 AALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555568899999999887754
No 112
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=30.82 E-value=3.6e+02 Score=25.13 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMY 166 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~ 166 (240)
++..++|..++.+...|+++-+.|.
T Consensus 79 ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 79 EMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666778888888888888777664
No 113
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=30.68 E-value=20 Score=31.49 Aligned_cols=40 Identities=23% Similarity=0.577 Sum_probs=29.2
Q ss_pred cccccccchhhhhhhhhcccCCc---eEEEeecCCCCccccCCC
Q 036652 20 TFSKRRAGLLKKTHELSVLCDAQ---IGLIIFSSTGKLCQYCTE 60 (240)
Q Consensus 20 TfsKRr~GL~KKA~ELsvLCda~---V~lIifS~~gkl~e~~s~ 60 (240)
-|.+-|.|++||.+ ...||..+ |+-|.||+.++..-|+..
T Consensus 119 ~~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSkD 161 (269)
T PRK09822 119 FYRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCKD 161 (269)
T ss_pred hhhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeeec
Confidence 34555889998874 67777654 555669999998888764
No 114
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=30.36 E-value=1.1e+02 Score=20.12 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=11.6
Q ss_pred CCCCCHHHHHHHHHHHH
Q 036652 114 LGSIPYDDLDQLEHELE 130 (240)
Q Consensus 114 L~~Ls~~EL~~LE~~Le 130 (240)
|..+|++||+..-..|+
T Consensus 5 Lk~ls~~eL~~rl~~LD 21 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLD 21 (49)
T ss_dssp GGGS-HHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCC
Confidence 56788888877666655
No 115
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=30.29 E-value=5.1e+02 Score=25.90 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=69.9
Q ss_pred EEEeecCCCCccccCCCchhHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHH
Q 036652 44 GLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLD 123 (240)
Q Consensus 44 ~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~ 123 (240)
--||=|..+|.++ .|+.++..-+++-...- +..+..+.++|-+...+... ...+..+-.+=+.-|.
T Consensus 18 kRVVkSaKdKr~d------el~~~i~~i~n~~ki~D-----w~~i~~eFd~L~k~~~K~~~---~~~~~~~P~~yir~l~ 83 (595)
T PF05470_consen 18 KRVVKSAKDKRFD------ELEEIIKQIRNAMKIND-----WSSILTEFDKLNKQLEKSKK---IQQNEGIPRFYIRALV 83 (595)
T ss_pred cccccchHHHHHH------HHHHHHHHHHHHHhhcc-----HHHHHHHHHHHHHHHHHHhh---hhhcCCCChhHHHHHH
Confidence 3344454455432 35556665555444433 44678888888887777544 2334566677799999
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 124 QLEHELESSVNKVRDRK--NELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 124 ~LE~~Le~~L~~VR~rK--~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
.||..|...+..-..+| ..--..-..++|+|++.--.+.......+.+
T Consensus 84 ~Led~v~e~~~~ke~~Kkms~~nakaln~lkQklkK~~k~~e~~i~~yre 133 (595)
T PF05470_consen 84 ELEDFVNETWADKEAKKKMSKNNAKALNTLKQKLKKYNKEYEAQIAKYRE 133 (595)
T ss_pred HHHHHHHHHHhhhHhhhhcCHHhHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 99999999764422222 2222234578888888777777666666544
No 116
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=29.95 E-value=1.6e+02 Score=21.48 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 141 NELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 141 ~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
...+..+++.+++....|++||..|.-+....
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556678999999999999999998887554
No 117
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=29.69 E-value=1.8e+02 Score=22.06 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=11.0
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 036652 84 SREQIFNELAVLRKETRRL 102 (240)
Q Consensus 84 ~~e~l~~el~kLk~e~~~L 102 (240)
|...|..|.+-||++++.|
T Consensus 6 hWq~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 6 HWQTWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445555666666666655
No 118
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.48 E-value=3.9e+02 Score=23.74 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 139 RKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 139 rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
+.++.|..+|...++-+..++++...|+.++..-..
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666667777777777777655443
No 119
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=29.39 E-value=3e+02 Score=22.08 Aligned_cols=47 Identities=36% Similarity=0.526 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 121 EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
+|..|+..|+ .+|.-|..+ .......+.++..|+.-|..+...|...
T Consensus 67 el~~L~~EL~----~l~sEk~~L-~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 67 ELNQLELELD----TLRSEKENL-DKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455554444 556666544 3556677777888888887777776544
No 120
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.38 E-value=3.7e+02 Score=23.19 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=6.4
Q ss_pred CCCccccCCCc
Q 036652 51 TGKLCQYCTEP 61 (240)
Q Consensus 51 ~gkl~e~~s~~ 61 (240)
+.+..-||+.+
T Consensus 7 ~~~~~~~C~~C 17 (302)
T PF10186_consen 7 NSRRRFYCANC 17 (302)
T ss_pred CCCCCeECHHH
Confidence 45555677654
No 121
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=29.34 E-value=2.2e+02 Score=21.89 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++|++|+..+-...+..-... ..-..++.+++..+..+...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRAS-ADVKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888877655333211111 11235677777777777777776666665544
No 122
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=29.28 E-value=39 Score=26.00 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=21.8
Q ss_pred hhhhhcccCCceEEEeecCCCCccccCCC
Q 036652 32 THELSVLCDAQIGLIIFSSTGKLCQYCTE 60 (240)
Q Consensus 32 A~ELsvLCda~V~lIifS~~gkl~e~~s~ 60 (240)
-.+|..|-|| +|...||++|++.+|-..
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G~ 30 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKGE 30 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeecC
Confidence 4567777776 566789999999998763
No 123
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=29.22 E-value=6.7e+02 Score=26.19 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=8.1
Q ss_pred ecCCCCccccCC
Q 036652 48 FSSTGKLCQYCT 59 (240)
Q Consensus 48 fS~~gkl~e~~s 59 (240)
|-+.|++..|..
T Consensus 140 ~~~q~~~~~~~~ 151 (1179)
T TIGR02168 140 IIEQGKISEIIE 151 (1179)
T ss_pred heecccHHHHHc
Confidence 446777777773
No 124
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=29.22 E-value=4.6e+02 Score=28.37 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=46.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 83 DSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRR 153 (240)
Q Consensus 83 ~~~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkk 153 (240)
+.+...-..+..|++++.-|+.+.-.+ -.+=+.+.+.++..||++|...-.++-.-=---+..||..|.+
T Consensus 1124 ~~ikK~ia~lnnlqqElklLRnEK~Rm-h~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~ 1193 (1439)
T PF12252_consen 1124 DSIKKAIANLNNLQQELKLLRNEKIRM-HSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEK 1193 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhh-ccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 334455556677888888887764332 2233447889999999999887777666555555566776665
No 125
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.93 E-value=2.3e+02 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.508 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 144 LQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 144 l~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
|.+.|+.-+.....|..||..|+.-+..
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677788888888777644
No 126
>PHA01750 hypothetical protein
Probab=28.93 E-value=2.1e+02 Score=20.10 Aligned_cols=19 Identities=16% Similarity=0.400 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036652 147 QLDNLRRKERMLEEENSNM 165 (240)
Q Consensus 147 qi~~lkkk~~~l~een~~L 165 (240)
+|+.++.|..++++.-..+
T Consensus 50 ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 50 EIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3333444444444433333
No 127
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=28.79 E-value=2.1e+02 Score=28.05 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Q 036652 86 EQIFNELAVLRKETRRLQLSMRRYTGED---------LGSIPYDDLDQLEHELESSVNKVRDRKNEL---------LQQQ 147 (240)
Q Consensus 86 e~l~~el~kLk~e~~~Lq~~~R~~~Ged---------L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~l---------l~~q 147 (240)
+-|+..+.-++++|..|+.+.-++.-|. +-++-+++|+..-.++-..-..+-.+-.++ |..+
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq 241 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ 241 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666677777666554443332 223344555555544444433333332222 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036652 148 LDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 148 i~~lkkk~~~l~een~~L~~~l 169 (240)
|-.+++|++.+.-|++.|..-|
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 5566777777666665554444
No 128
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=28.72 E-value=2.8e+02 Score=21.52 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 125 LEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 125 LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
+-+.|+.+-..|+.|- +.|..+|..+....+..+++-...+..+..
T Consensus 63 vkqel~EAr~nV~kRl-efI~~Eikr~e~~i~d~q~e~~k~R~~v~k 108 (120)
T KOG3478|consen 63 VKQELEEARTNVGKRL-EFISKEIKRLENQIRDSQEEFEKQREAVIK 108 (120)
T ss_pred hHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999998885 477778888888888877777666666544
No 129
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=28.28 E-value=2.1e+02 Score=22.49 Aligned_cols=53 Identities=6% Similarity=0.115 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+++++|+..+-...+..-... ..-.+++.+++..+..+...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888877765433211111 11234566677778888877777777776554
No 130
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=28.25 E-value=98 Score=27.26 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 141 NELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 141 ~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
+++|..+.+.|+.+.+.|--+|..|...|+
T Consensus 106 n~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 106 NEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555556666666666666666666665
No 131
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=28.16 E-value=1.7e+02 Score=27.17 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036652 87 QIFNELAVLRKETRRLQ 103 (240)
Q Consensus 87 ~l~~el~kLk~e~~~Lq 103 (240)
.|+.|++.|++++...+
T Consensus 98 RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 98 RLRREVEELKEELEKRK 114 (388)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555555443
No 132
>PLN03128 DNA topoisomerase 2; Provisional
Probab=28.11 E-value=4.3e+02 Score=28.60 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=23.0
Q ss_pred EEEeecCCCCccccCCCchhHHHHHHHHhhcc
Q 036652 44 GLIIFSSTGKLCQYCTEPFRMEQIIERRLKVT 75 (240)
Q Consensus 44 ~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~ 75 (240)
-+++|.+.|++..|.+ +++||+.|-...
T Consensus 961 nm~l~d~~~~i~ky~~----~~~il~~f~~~R 988 (1135)
T PLN03128 961 NMHLFDKDGKIKKYDS----PEDILEEFFHLR 988 (1135)
T ss_pred EEEEECCCCcccCCCC----HHHHHHHHHHHH
Confidence 5788999999999975 589999887654
No 133
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=28.01 E-value=6e+02 Score=26.06 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=57.4
Q ss_pred EEEeecCCCCccccCCCchhHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHh----------hhccCC-C
Q 036652 44 GLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLS----------MRRYTG-E 112 (240)
Q Consensus 44 ~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~----------~R~~~G-e 112 (240)
-+++|+++|++ .+. ++++||+.|-.+.-.-. ....+.++.+++++.+.++-- ++-..+ +
T Consensus 337 n~~~~d~~~~p-~~~----~l~~il~~f~~~R~~~~-----~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir~s~ 406 (742)
T PRK05561 337 NMNAIGLDGRP-RVK----GLKEILSEWLDHRREVV-----TRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRESD 406 (742)
T ss_pred eEEEEccCCEE-EEC----CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCc
Confidence 57788888886 343 47999999876543211 112233344444443333211 110000 0
Q ss_pred C-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 113 D-----LGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEE 161 (240)
Q Consensus 113 d-----L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~ee 161 (240)
+ +..+.+.| .+.+.-|+..|.++..-...-|.++++.|+++...|+.-
T Consensus 407 ~ak~~l~~~f~~~~-~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~i 459 (742)
T PRK05561 407 EPKANLMARFDLSE-IQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAI 459 (742)
T ss_pred cHHHHHHHHhCCCH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00011222 366667777777777777777777777777776666654
No 134
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=27.83 E-value=4.7e+02 Score=23.89 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHH
Q 036652 126 EHELESSVNKVRDRKNELLQ----QQ---LDNLRRKERMLEEE 161 (240)
Q Consensus 126 E~~Le~~L~~VR~rK~~ll~----~q---i~~lkkk~~~l~ee 161 (240)
-..|...|..+|.-|.++=. +| ++.|++++..|+.+
T Consensus 108 tn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e 150 (310)
T PF09755_consen 108 TNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKE 150 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34566666666666654321 11 45666666666543
No 135
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.77 E-value=2e+02 Score=26.23 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 114 LGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNM 165 (240)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L 165 (240)
-++||.+|-..| .+||.||.+++ +.|+.|+..++...+|-..|
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 356676665544 46899998887 67888888777666655444
No 136
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.43 E-value=6.2e+02 Score=25.07 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 036652 86 EQIFNELAVLRKETRRLQLSM 106 (240)
Q Consensus 86 e~l~~el~kLk~e~~~Lq~~~ 106 (240)
..+..++.+|+.+++.++...
T Consensus 109 a~~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKL 129 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 345566666666666655443
No 137
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=27.26 E-value=1.7e+02 Score=26.47 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=31.8
Q ss_pred ceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhh
Q 036652 7 AIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLK 73 (240)
Q Consensus 7 ~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~ 73 (240)
.+..|.|.+.|..+=|+ +||..|.+ ++| .|-+. ..|++|+|.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nD-pEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHND-PELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCc-HHHHHHHHHHhH
Confidence 46678888888776332 58887775 333 46655 479999999875
No 138
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=27.22 E-value=4.5e+02 Score=24.94 Aligned_cols=46 Identities=7% Similarity=0.120 Sum_probs=30.9
Q ss_pred HHHHHHHHhhccCCCCCC--CCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 036652 64 MEQIIERRLKVTGTRIPE--HDSREQIFNELAVLRKETRRLQLSMRRY 109 (240)
Q Consensus 64 ~~~il~RY~~~~~~~~~~--~~~~e~l~~el~kLk~e~~~Lq~~~R~~ 109 (240)
++.+++.|.......... ....+++..++.+++++.+..+..++.+
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666687754332111 1346788899999999999888777655
No 139
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=27.20 E-value=3.7e+02 Score=22.44 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 036652 153 RKERMLEEENSNMYRWIQEHRAALE 177 (240)
Q Consensus 153 kk~~~l~een~~L~~~l~~~~~~~~ 177 (240)
+..+.|+.||..|+.-+.+++.+.+
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq~ale 94 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQSALE 94 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468889999999999988776654
No 140
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=26.99 E-value=92 Score=23.28 Aligned_cols=78 Identities=13% Similarity=0.243 Sum_probs=42.2
Q ss_pred hhhhhcccCCceEEEe-------ecCCCCc-cccCCCchhHHHHHHHHhhcc---CCCCCCCCchHHHHHHHHHHHHHHH
Q 036652 32 THELSVLCDAQIGLII-------FSSTGKL-CQYCTEPFRMEQIIERRLKVT---GTRIPEHDSREQIFNELAVLRKETR 100 (240)
Q Consensus 32 A~ELsvLCda~V~lIi-------fS~~gkl-~e~~s~~~s~~~il~RY~~~~---~~~~~~~~~~e~l~~el~kLk~e~~ 100 (240)
..|||..|+++...|. +.|.+.- -.|+.+. ..-..+.+..... +.+....+-.-.|-.+++.|+.++.
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~~~~~~~~F~~-~~l~r~~~a~rL~~dl~in~~gialvl~LLd~i~~Lr~el~ 88 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDD-HAAIVVQRAVRLRHELALDWPGIAVALTLLDEIAHLKQENR 88 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCCCCcccceECH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888988765543 2333322 3333332 2234444444332 2221111223357788888999888
Q ss_pred HHHHhhhccC
Q 036652 101 RLQLSMRRYT 110 (240)
Q Consensus 101 ~Lq~~~R~~~ 110 (240)
.|+..++.+.
T Consensus 89 ~L~~~l~~~~ 98 (101)
T PRK10265 89 LLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHh
Confidence 8888776554
No 141
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=26.86 E-value=22 Score=27.11 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=35.7
Q ss_pred ccceeEe-cCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhc
Q 036652 5 KIAIKRI-ENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKV 74 (240)
Q Consensus 5 Ki~ik~I-en~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~ 74 (240)
+|++|.+ +|.+|=.|+|.||-.|+-+ +=....|.+--|.-. -.++++..|.+.
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq---------------fEi~n~G~~RI~gYk--~se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ---------------FEIRNKGEFRIFGYK--MSEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE---------------EEEETTSEEEEEEES----HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEEc--CCHHHHHHHHhc
Confidence 5788877 5899999999999999632 224567776555544 247788877764
No 142
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.69 E-value=3.2e+02 Score=24.43 Aligned_cols=57 Identities=16% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 86 EQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLE 159 (240)
Q Consensus 86 e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~ 159 (240)
+.|...+..+..+.+.++.++-+..- ++..|+..++..-.+|++|+ +.|+++.|.+.
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~---------eik~l~~eI~~~~~~I~~r~--------~~l~~raRAmq 111 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKA---------EIKKLQKEIAELKENIVERQ--------ELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
No 143
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=26.59 E-value=1.8e+02 Score=23.51 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++|++|+..+-......-...-..-..++.++++.+..+...|+..-..|...+
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888877766443221111112334555666677777777766666665443
No 144
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.56 E-value=2.5e+02 Score=21.59 Aligned_cols=53 Identities=9% Similarity=0.203 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+++++|+..+-......-... ..-..++..++..+..+...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (126)
T cd04785 57 GFSLEEIRALLALSDRPDRSC-AEADAIARAHLADVRARIADLRRLEAELKRMV 109 (126)
T ss_pred CCCHHHHHHHHhhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888877655433211111 12245677777888888888877777776555
No 145
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=26.51 E-value=2.2e+02 Score=22.45 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++|++|+..+-......-..--.....++.++++.+.++...|++....|....
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777654321100000112235666777777777777777666665544
No 146
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.95 E-value=3.8e+02 Score=22.12 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
+.|..+++.|.++....+++...|...|..
T Consensus 121 e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 121 EELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777777777777777766644
No 147
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.95 E-value=2.3e+02 Score=21.31 Aligned_cols=50 Identities=10% Similarity=0.178 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 117 IPYDDLDQLEHELESSV---NKVRDRKNELLQQQLDNLRRKERMLEEENSNMYR 167 (240)
Q Consensus 117 Ls~~EL~~LE~~Le~~L---~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~ 167 (240)
+|++|+..+-...+..- ... ....+++.+++..+..+...|+..-..|..
T Consensus 57 ~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 57 LTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred CCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777655443221 111 112355556666666666666555555443
No 148
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.63 E-value=5.2e+02 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l~~ 171 (240)
..+-..++.+.++|.+|+..|..
T Consensus 257 ~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 257 AQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999853
No 149
>PHA02414 hypothetical protein
Probab=25.56 E-value=2.4e+02 Score=21.40 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 118 PYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENS 163 (240)
Q Consensus 118 s~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~ 163 (240)
.+.||+.+--.|+.-+. |.+-|..-+.-||..|.+++..|.+-|.
T Consensus 37 av~ELRdivvslDKd~A-v~sEKqshi~yQi~~Lee~i~aL~~~n~ 81 (111)
T PHA02414 37 AVAELRDIVVSLDKDVA-VNSEKQSHIYYQIERLEEKISALAESNK 81 (111)
T ss_pred HHHHHHHHHHHhhhHhh-hhHHHhhHHHHHHHHHHHHHHHHHhccc
Confidence 36788888888887665 5566666777899999999999988774
No 150
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=25.54 E-value=46 Score=27.80 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=11.0
Q ss_pred hHHHHHHHHhhccCCC
Q 036652 63 RMEQIIERRLKVTGTR 78 (240)
Q Consensus 63 s~~~il~RY~~~~~~~ 78 (240)
++.+++++|.......
T Consensus 137 ~~~~l~~kY~~l~~~~ 152 (199)
T PF10112_consen 137 TAVKLLEKYAELESQP 152 (199)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5777888887766544
No 151
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.47 E-value=7.8e+02 Score=25.59 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 117 Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
|-+--|+.|--.|++-|..-.. --+++....+.|-|-+..+.+||++|...+.+.+
T Consensus 427 ~El~sLqSlN~~Lq~ql~es~k-~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd 482 (861)
T PF15254_consen 427 LELFSLQSLNMSLQNQLQESLK-SQELLQSKNEELLKVIENQKEENKRLRKMFQEKD 482 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554444444443322 2345666667777888888889988888876643
No 152
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=25.42 E-value=3e+02 Score=20.79 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=31.5
Q ss_pred hhcccCCceEEEeecC-----CCCccccCCCchhHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 036652 35 LSVLCDAQIGLIIFSS-----TGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQ 103 (240)
Q Consensus 35 LsvLCda~V~lIifS~-----~gkl~e~~s~~~s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq 103 (240)
.-|-||..+.|||-.+ +||+|--|+-. |-+---.-.+-+.|- .--|..|.+.++++...+.
T Consensus 19 v~ie~dcnakvvvats~dpvts~klyfscpye-----isdg~g~~~gfkrww---tvalcdefdmikee~~emk 84 (122)
T PF05325_consen 19 VPIECDCNAKVVVATSRDPVTSGKLYFSCPYE-----ISDGPGRGCGFKRWW---TVALCDEFDMIKEETIEMK 84 (122)
T ss_pred cceeccCCceEEEEeccCCcccceeeecCccc-----cccCCCCCccceeEE---eeeechhhhHHHHHHHHHH
Confidence 3577888888888654 57777555421 101000111123343 1135667777777665554
No 153
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.35 E-value=9.2e+02 Score=26.38 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKN------ELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~------~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
+.++++|..--..++..+..++.... +-+..+|..|+.++..+.++...+...+.
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778887777777777777644322 22345556665555555555555554443
No 154
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=25.30 E-value=2.5e+02 Score=21.51 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++|++|+..+-...+. ..+ ..-..++.+++..++.+...|+.....|...+
T Consensus 56 G~sl~eI~~~l~~~~~--~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 106 (124)
T TIGR02051 56 GFSLEEIGGLLGLVDG--THC-REMYELASRKLKSVQAKMADLLRIERLLEELL 106 (124)
T ss_pred CCCHHHHHHHHhcccC--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777776654332 111 11234566667777777777766666665443
No 155
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=25.27 E-value=76 Score=23.99 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=22.3
Q ss_pred hhhhhhcccCCceEEEeecCCCCccccCCCc
Q 036652 31 KTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61 (240)
Q Consensus 31 KA~ELsvLCda~V~lIifS~~gkl~e~~s~~ 61 (240)
|-.||--+-+| +|.=.|||+||+.+|-++-
T Consensus 4 kLdeLlqi~Gv-~AAGefs~DGkLv~Ykgdm 33 (109)
T COG4831 4 KLDELLQIKGV-MAAGEFSPDGKLVEYKGDM 33 (109)
T ss_pred hHHHHhCccce-eEeceeCCCCceEEeeCCC
Confidence 55666666665 4555799999999998863
No 156
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=24.98 E-value=2.8e+02 Score=21.38 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++|++|+..+-..-+..-... ..-.+++..+++.+..+...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 57 DMSLAEIRQLLRYQDKPEKSC-SDVNALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred CCCHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777654322211111 12234677777888888888877777776544
No 157
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.86 E-value=7e+02 Score=24.84 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 036652 87 QIFNELAVLRKETRRLQLSMRRYTG 111 (240)
Q Consensus 87 ~l~~el~kLk~e~~~Lq~~~R~~~G 111 (240)
.+..++.++..+++.+...++..-.
T Consensus 395 ~~~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 395 QLLKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4445556666666666666654443
No 158
>PLN02372 violaxanthin de-epoxidase
Probab=24.56 E-value=6.3e+02 Score=24.20 Aligned_cols=64 Identities=23% Similarity=0.386 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 92 LAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 92 l~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+++|.+..+..++.+ ++|...+|..|+.-+..|+..-..++..+ .+....+.|++.-......+
T Consensus 363 ~~~l~~~~e~~e~~i------------~~e~~~~~~e~~~~v~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~f~~~l 426 (455)
T PLN02372 363 LERLEKDVEEGEKTI------------VKEARQIEEELEKEVEKLGKEEESLFKRV--ALEEGLKELEQDEENFLKEL 426 (455)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh
Confidence 455555555555554 55688999999999999998887777554 46666666555444444444
No 159
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.36 E-value=4.3e+02 Score=28.43 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 93 AVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 93 ~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
..++++.++|+..+.+-. -.++..|++.|+.+.+ +|.+-..+...|.+.+++.|+.++..|+..
T Consensus 367 rElReEve~lr~qL~~ae--------~~~~~el~e~l~esek--------li~ei~~twEEkl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 367 RELREEVEKLREQLEQAE--------AMKLPELKEKLEESEK--------LIKEITVTWEEKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred HHHHHHHHHHHHHHhhhh--------hccchHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665555422 2345566666665554 333334678889999999999999988765
Q ss_pred H
Q 036652 173 R 173 (240)
Q Consensus 173 ~ 173 (240)
.
T Consensus 431 g 431 (1714)
T KOG0241|consen 431 G 431 (1714)
T ss_pred H
Confidence 4
No 160
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=24.33 E-value=2.7e+02 Score=25.81 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=28.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 112 EDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEE 160 (240)
Q Consensus 112 edL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~e 160 (240)
..|++.|++|+-.|-+. ++-|..+++.|+.|+..|++
T Consensus 24 ~~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 24 HELEGVSIDENFALRME------------NHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred ccccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHHHH
Confidence 37899999999888664 44566777888888888833
No 161
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.18 E-value=2.9e+02 Score=20.25 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENS 163 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~ 163 (240)
.||.++=..||..+. .+..++.++.++.+.|..||.
T Consensus 32 eLs~e~R~~lE~E~~------------~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 32 ELSPEARRSLEKELN------------ELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred CCChHHHHHHHHHHH------------HHHHHhhccHHHHHHHHHhhh
Confidence 456666666664332 233444555555555655554
No 162
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.98 E-value=2.4e+02 Score=21.88 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+++++|+..+-......-...-..-..++.++++.+..+...|+.-...|...+
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSCAEVKAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888877665331100000112235677777777777777776666665444
No 163
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=23.62 E-value=1.1e+02 Score=27.31 Aligned_cols=37 Identities=32% Similarity=0.509 Sum_probs=27.9
Q ss_pred HHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 036652 102 LQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRD 138 (240)
Q Consensus 102 Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~ 138 (240)
++....++.-|.|.+|+++||.+|-..|-..+..|-+
T Consensus 204 ~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfe 240 (285)
T PF06937_consen 204 LQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFE 240 (285)
T ss_pred ccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777899999999999998887755554433
No 164
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=23.62 E-value=52 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=24.1
Q ss_pred cccCCceEEEeecCCCCcc-ccCCCc-----hhHHHHHHHHh
Q 036652 37 VLCDAQIGLIIFSSTGKLC-QYCTEP-----FRMEQIIERRL 72 (240)
Q Consensus 37 vLCda~V~lIifS~~gkl~-e~~s~~-----~s~~~il~RY~ 72 (240)
.-|+..|-+++||+.-+.| -|++.. ..+++|++.++
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP~DQ~~Fv~~lr~Vi~~~k 150 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIPNDQEGFVNRLRQVIQIQK 150 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEESTHHHHHHHHHHHCHHHC
T ss_pred CCCceEEEEEEEcCCCceEEEEcCCCHHHHHHHHHHHHHHhh
Confidence 6799999999999998854 577653 23445554443
No 165
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.57 E-value=3e+02 Score=21.04 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 117 Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++++|+..+-..-... ....-..++..+++.+.++...|+..-..|...+
T Consensus 58 ~sL~eI~~~l~~~~~~---~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 107 (126)
T cd04783 58 FTLDEIAELLELDDGT---DCSEARELAEQKLAEVDEKIADLQRMRASLQELV 107 (126)
T ss_pred CCHHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777655432211 0112245566666777777766666665555444
No 166
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.48 E-value=8.5e+02 Score=25.33 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036652 124 QLEHELESSVNKVRDRKNELLQ 145 (240)
Q Consensus 124 ~LE~~Le~~L~~VR~rK~~ll~ 145 (240)
.+.-.++.+|..+..-|..+-.
T Consensus 498 rik~ev~eal~~~k~~q~kLe~ 519 (861)
T PF15254_consen 498 RIKIEVEEALVNVKSLQFKLEA 519 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH
Confidence 3344455555555554444443
No 167
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=23.43 E-value=2.5e+02 Score=22.13 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+++++|+..+-..+...-......-..++..+...+..+...|+.--..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 110 (139)
T cd01110 57 GLSLAEIAEALATLPEDRTPTKADWERLSRAWRDRLDERIAELQQLRDQLDGCI 110 (139)
T ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888887665443221011111224455556667777777776666665555
No 168
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.32 E-value=3e+02 Score=20.11 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 114 LGSIPYDDLDQLE---HELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 114 L~~Ls~~EL~~LE---~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
.++.+..|...+. .+|...|..+-.|.. .+.-+.+.|-+-|+.-+.++.+.
T Consensus 20 ~~e~~~~E~~~ins~LD~Lns~LD~LE~rnD--------~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 20 DDEFDEEEYAAINSMLDQLNSCLDHLEQRND--------HLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 344455655555544 44466777888888888887654
No 169
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=23.25 E-value=2.8e+02 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.357 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
+.++.++..|+.||..|+.++++...
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888999999999888876543
No 170
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=23.14 E-value=3.1e+02 Score=20.10 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELE 130 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le 130 (240)
+++++++..+-....
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 688888888776553
No 171
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.12 E-value=4.4e+02 Score=21.83 Aligned_cols=54 Identities=22% Similarity=0.406 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 119 YDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 119 ~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
+.+|......|..+|..+.. .+-+..+|..|++....|.+.-+.+...|...+.
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~--hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~ 57 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQE--HQENQARIQQLRAEIEELDEQIRDILKQLKEARK 57 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888854 3445677788888777777777777777765443
No 172
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=22.80 E-value=98 Score=27.50 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 036652 112 EDLGSIPYDDLDQLEHELESSVNKVR 137 (240)
Q Consensus 112 edL~~Ls~~EL~~LE~~Le~~L~~VR 137 (240)
+.=-+|++++++.+|......|..+|
T Consensus 232 DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 232 DKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999887
No 173
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=22.68 E-value=3.2e+02 Score=20.97 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
++|++|+..+-......-.. ......++.+++..+..+...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02044 57 GFSLEECKELLNLWNDPNRT-SADVKARTLEKVAEIERKISELQSMRDQLEALA 109 (127)
T ss_pred CCCHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788877765433221110 112234566667777777777777776666554
No 174
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=22.63 E-value=29 Score=32.28 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=0.0
Q ss_pred ccchhhhhhhhhcccCCceEE-EeecCCCCccccCCCc
Q 036652 25 RAGLLKKTHELSVLCDAQIGL-IIFSSTGKLCQYCTEP 61 (240)
Q Consensus 25 r~GL~KKA~ELsvLCda~V~l-IifS~~gkl~e~~s~~ 61 (240)
-.||+|=+.=..-||+|..+| =+.|++||+-+|+|++
T Consensus 53 qd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~s 90 (354)
T PF04873_consen 53 QDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPS 90 (354)
T ss_dssp --------------------------------------
T ss_pred hhHHHHhhccccccccCceeeecCCCCCCCccCCcCCc
Confidence 357777778888999999999 7889999999999985
No 175
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.58 E-value=5.6e+02 Score=22.93 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhccC--CCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 94 VLRKETRRLQLSMRRYT--GEDLGS---IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 94 kLk~e~~~Lq~~~R~~~--GedL~~---Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
..+..-+.+++.+|.+. .+||+- -++=-|.+||+.|..++.++----.+|- +-+.+-.-+..|.+|-..|+.+
T Consensus 102 qt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd--Eke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 102 QTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD--EKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566553 234432 2344567788888888876532222221 1122444567788888888888
Q ss_pred HHHHH
Q 036652 169 IQEHR 173 (240)
Q Consensus 169 l~~~~ 173 (240)
|+-+.
T Consensus 180 lavr~ 184 (333)
T KOG1853|consen 180 LAVRT 184 (333)
T ss_pred HHHHH
Confidence 86443
No 176
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=22.47 E-value=1.4e+02 Score=24.20 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 126 EHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 126 E~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
+..|-.++..=|.-|.+ |-.+|++|+.|+..|.|.-..|+..
T Consensus 94 s~~iY~d~~aWk~hr~~-ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 94 SNVIYQDPKAWKDHRLH-IDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred cHhhhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555666654 4578899999999999999999754
No 177
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=22.35 E-value=1.1e+02 Score=23.98 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=18.3
Q ss_pred cccccccccchhhhhhhhhcccC
Q 036652 18 QVTFSKRRAGLLKKTHELSVLCD 40 (240)
Q Consensus 18 qvTfsKRr~GL~KKA~ELsvLCd 40 (240)
-+.|+|+|..++||-.+-.|-|.
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC~ 26 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKCR 26 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeeec
Confidence 35689999999999888777554
No 178
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=22.21 E-value=47 Score=28.29 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=19.8
Q ss_pred ccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhc
Q 036652 38 LCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKV 74 (240)
Q Consensus 38 LCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~ 74 (240)
--||++||+|||.++.- |.+.+++=|.+.
T Consensus 90 yrgaqa~vLVFSTTDr~--------SFea~~~w~~kv 118 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRY--------SFEATLEWYNKV 118 (246)
T ss_pred hccccceEEEEecccHH--------HHHHHHHHHHHH
Confidence 35899999999988752 345555555543
No 179
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=21.90 E-value=1.6e+02 Score=26.77 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 134 NKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 134 ~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
+.-|.+|.+.+ +.|..++.-||.+|+.|..+|...
T Consensus 304 RECRRKKKEYV----KCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 304 RECRRKKKEYV----KCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred HHHHHhHhHHH----HHHHhHHHHHhcccHHHHHHHHHH
Confidence 34455666666 889999999999999998888654
No 180
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=21.76 E-value=8.5 Score=25.59 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=20.4
Q ss_pred eEEEeecCCCCccccCCCchhHHHHHHHHhhcc
Q 036652 43 IGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVT 75 (240)
Q Consensus 43 V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~ 75 (240)
|++|+|+| +|++++.. ++-+.+..|++..
T Consensus 12 valllfGp-~kLP~~~r---~lG~~ir~fk~~~ 40 (53)
T PF02416_consen 12 VALLLFGP-KKLPELAR---SLGKAIREFKKAI 40 (53)
T ss_dssp HHHHHS-T-TTHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHhCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence 57788987 78888875 4677777777643
No 181
>PRK10824 glutaredoxin-4; Provisional
Probab=21.72 E-value=94 Score=23.97 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=24.0
Q ss_pred EEEeecCCCCccccCCCchhHHHHHHHHh
Q 036652 44 GLIIFSSTGKLCQYCTEPFRMEQIIERRL 72 (240)
Q Consensus 44 ~lIifS~~gkl~e~~s~~~s~~~il~RY~ 72 (240)
.|||||-+-....||+-+..++++|+.+.
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~ 44 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACG 44 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcC
Confidence 48899877677778888888999999874
No 182
>smart00415 HSF heat shock factor.
Probab=21.65 E-value=77 Score=23.74 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=29.7
Q ss_pred cccCCceE-EEeecCCCCccccCCCchhHHHHHHHHhhcc
Q 036652 37 VLCDAQIG-LIIFSSTGKLCQYCTEPFRMEQIIERRLKVT 75 (240)
Q Consensus 37 vLCda~V~-lIifS~~gkl~e~~s~~~s~~~il~RY~~~~ 75 (240)
+|.|.+.. +|-.+++|+.+....+..=.+.|+.+|-+++
T Consensus 12 ~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~ 51 (105)
T smart00415 12 LVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHN 51 (105)
T ss_pred HHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCC
Confidence 56677775 8889999998888776555677898886654
No 183
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=21.64 E-value=1.2e+02 Score=19.85 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=20.7
Q ss_pred eEEEeecCCCCccccCCCchhHHHHHHHHhhc
Q 036652 43 IGLIIFSSTGKLCQYCTEPFRMEQIIERRLKV 74 (240)
Q Consensus 43 V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~ 74 (240)
|.+++|+.. +|+++..++.+++.+...
T Consensus 1 ~~v~~f~~~-----~C~~C~~~~~~l~~l~~~ 27 (67)
T cd02973 1 VNIEVFVSP-----TCPYCPDAVQAANRIAAL 27 (67)
T ss_pred CEEEEEECC-----CCCCcHHHHHHHHHHHHh
Confidence 567888865 577777899999988554
No 184
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=21.51 E-value=3.3e+02 Score=19.88 Aligned_cols=18 Identities=17% Similarity=0.256 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036652 154 KERMLEEENSNMYRWIQE 171 (240)
Q Consensus 154 k~~~l~een~~L~~~l~~ 171 (240)
+...|.+....|...+..
T Consensus 73 ~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 73 KLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 185
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=21.39 E-value=2.9e+02 Score=22.56 Aligned_cols=47 Identities=15% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+++++|+..+-..-... ...++.+++..+..+...|+.....|...+
T Consensus 58 G~sL~eI~~ll~~~~~~-------~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 58 GVSLEDIRSLLQQPGDD-------ATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred CCCHHHHHHHHhcCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777665433322 234455566666666666666555555544
No 186
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=21.33 E-value=1.2e+02 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCH
Q 036652 85 REQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPY 119 (240)
Q Consensus 85 ~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~ 119 (240)
...|+.++++.++.+..+...|+.+.|.|-++.-.
T Consensus 5 v~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp 39 (134)
T PF04697_consen 5 VRTLQAQLEKAKESLKNVDENIKKLTGRDPSENRP 39 (134)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCc
Confidence 34688999999999999999999999998776654
No 187
>PHA02109 hypothetical protein
Probab=21.31 E-value=4e+02 Score=22.40 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=12.8
Q ss_pred ccCCCCCCCCC--HHHHHHHHHHHH
Q 036652 108 RYTGEDLGSIP--YDDLDQLEHELE 130 (240)
Q Consensus 108 ~~~GedL~~Ls--~~EL~~LE~~Le 130 (240)
...|+.|++|+ ++++..|+-.||
T Consensus 179 ~~t~~~L~~~~~~L~~I~~L~~ki~ 203 (233)
T PHA02109 179 SHTGENLEGLTDKLKQISELTIKLE 203 (233)
T ss_pred ccchhhhhhhhHHHHhhHHHHHHHH
Confidence 34566666665 555555555444
No 188
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=21.24 E-value=6.5e+02 Score=23.14 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 86 EQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNM 165 (240)
Q Consensus 86 e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L 165 (240)
..|..+|+--+++|.-|.+..|+-.-| ++-|.+--..||.++-.-.+. .+-+-.++++...|.||-+.|
T Consensus 10 ~EL~kQiEIcqEENkiLdK~hRQKV~E------VEKLsqTi~ELEEaiLagGaa-----aNavrdYqrq~~elneEkrtL 78 (351)
T PF07058_consen 10 QELMKQIEICQEENKILDKMHRQKVLE------VEKLSQTIRELEEAILAGGAA-----ANAVRDYQRQVQELNEEKRTL 78 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777787888777775432 444544445555544332222 223456777777777777777
Q ss_pred HHHHHH
Q 036652 166 YRWIQE 171 (240)
Q Consensus 166 ~~~l~~ 171 (240)
-.+|+.
T Consensus 79 eRELAR 84 (351)
T PF07058_consen 79 ERELAR 84 (351)
T ss_pred HHHHHH
Confidence 776654
No 189
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=21.24 E-value=1.1e+02 Score=26.39 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=35.3
Q ss_pred cchhhhh----hhhhcccCCceEEEeecCC---CCccccCCCchhHHHHHHHHhhc
Q 036652 26 AGLLKKT----HELSVLCDAQIGLIIFSST---GKLCQYCTEPFRMEQIIERRLKV 74 (240)
Q Consensus 26 ~GL~KKA----~ELsvLCda~V~lIifS~~---gkl~e~~s~~~s~~~il~RY~~~ 74 (240)
+-|+-|- .|+++=||-++.|++.+|+ +....|... .++.|+..|+.+
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~--pL~~vv~~~~~~ 88 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAA--PLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecch--hHHHHHHHHHHH
Confidence 3455554 7999999999999999986 334456654 589999988864
No 190
>PRK03918 chromosome segregation protein; Provisional
Probab=21.13 E-value=8.9e+02 Score=24.72 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCC--CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 036652 86 EQIFNELAVLRKETRRLQLSMRRYTGE--DLG-SIPYDDLDQLEHELESSVNKVRDRKNEL--LQQQLDNLRRKERMLEE 160 (240)
Q Consensus 86 e~l~~el~kLk~e~~~Lq~~~R~~~Ge--dL~-~Ls~~EL~~LE~~Le~~L~~VR~rK~~l--l~~qi~~lkkk~~~l~e 160 (240)
..+..++..+++++..++..+..+... .|. .++.+++..++..++..-..+..-...+ +..+++.+++....+++
T Consensus 622 ~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~ 701 (880)
T PRK03918 622 KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 036652 161 ENSNMYRWIQEHRA 174 (240)
Q Consensus 161 en~~L~~~l~~~~~ 174 (240)
+-..+.........
T Consensus 702 ~~~~l~~~~~~~~~ 715 (880)
T PRK03918 702 ELEEREKAKKELEK 715 (880)
T ss_pred HHHHHHHHHHHHHH
No 191
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=20.83 E-value=5.8e+02 Score=24.47 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=38.3
Q ss_pred cccCCCch----h----HHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHH
Q 036652 55 CQYCTEPF----R----MEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLE 126 (240)
Q Consensus 55 ~e~~s~~~----s----~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE 126 (240)
++|+.|.. . .-..|.+|+-....... .+-.+...+..|.++++.|+..-. ..+.|+ -+|+..||
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~fe~pi~ele~ki~el~~~~~-~~~~~~----~~ei~~l~ 111 (431)
T PLN03230 40 HEYPWPEKLPQGELTTGALKILNRFKPLKNKPKP---VTLPFEKPIVDLENRIDEVRELAN-KTGVDF----SAQIAELE 111 (431)
T ss_pred CCCCCcccCCCCcccccHHHHHHhcCCCCCCCCC---CccchhhHHHHHHHHHHHHHhhhh-cccccH----HHHHHHHH
Confidence 78876631 2 33477777765554322 233344557777777777765322 112222 24666666
Q ss_pred HHHHHHHH
Q 036652 127 HELESSVN 134 (240)
Q Consensus 127 ~~Le~~L~ 134 (240)
..++....
T Consensus 112 ~~~~~~~~ 119 (431)
T PLN03230 112 ERYDQVRR 119 (431)
T ss_pred HHHHHHHH
Confidence 66554433
No 192
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.78 E-value=2.2e+02 Score=23.49 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=46.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 83 DSREQIFNELAVLRKETRRLQLSMR---RYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLE 159 (240)
Q Consensus 83 ~~~e~l~~el~kLk~e~~~Lq~~~R---~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~ 159 (240)
...+.|+.|+.|+.++|..|+..+- ...++==--|.+.-|..|-+.|..++..|..---.. .+|--..+-
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~-------gqKTsaa~s 101 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYK-------GQKTSAAFS 101 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHH-------HHHHHHHHH
Confidence 3456899999999999988775421 111110012225667788888888888776543222 122233344
Q ss_pred HHHHHHHHHHHHH
Q 036652 160 EENSNMYRWIQEH 172 (240)
Q Consensus 160 een~~L~~~l~~~ 172 (240)
.-...+..++.+.
T Consensus 102 ~~g~~i~~Kl~dm 114 (162)
T PF04201_consen 102 SVGSAISRKLGDM 114 (162)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555443
No 193
>PLN03128 DNA topoisomerase 2; Provisional
Probab=20.64 E-value=39 Score=36.19 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=19.4
Q ss_pred ccccccccccchhhhhhh-hhcccCCceEEE
Q 036652 17 RQVTFSKRRAGLLKKTHE-LSVLCDAQIGLI 46 (240)
Q Consensus 17 RqvTfsKRr~GL~KKA~E-LsvLCda~V~lI 46 (240)
|.-.|.||+.-+++|+.+ |.+| ...+.+|
T Consensus 988 R~~~y~kRk~~~l~~~~~~~~~l-~~k~~fi 1017 (1135)
T PLN03128 988 RLDLYVKRKEVLLENLEYELKKL-DNKARFI 1017 (1135)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHH-HHHhHHH
Confidence 566789999999999864 4444 4344333
No 194
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.47 E-value=2.8e+02 Score=18.55 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 145 QQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 145 ~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
..+.+.|+.....|..++..|..+
T Consensus 39 ~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 39 ESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555555555443
No 195
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=20.29 E-value=8.3e+02 Score=27.19 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEeecCCCCccccCCCchhHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-----------------
Q 036652 45 LIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMR----------------- 107 (240)
Q Consensus 45 lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R----------------- 107 (240)
+++|.+.|+++.|.+ +.+||+.|-...-.-... ..+..+.++..+...|....|
T Consensus 963 m~~~d~~g~i~~~~~----~~~Il~~f~~~Rl~~y~k-----R~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~k 1033 (1388)
T PTZ00108 963 MVLFDENGKIKKYSD----ALDILKEFYLVRLDLYKK-----RKEYLLGKLERELARLSNKVRFIKHVINGELVITNAKK 1033 (1388)
T ss_pred EEEEeCCCCcceeCC----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCCH
Q ss_pred --------------------------------------------------------ccCCCCCCCCCHHHHHHHHHHHHH
Q 036652 108 --------------------------------------------------------RYTGEDLGSIPYDDLDQLEHELES 131 (240)
Q Consensus 108 --------------------------------------------------------~~~GedL~~Ls~~EL~~LE~~Le~ 131 (240)
.+.+-.|-+|+.+....|..+++.
T Consensus 1034 ~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~ 1113 (1388)
T PTZ00108 1034 KDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEK 1113 (1388)
T ss_pred HHHHHHHHHcCCCccchhhhhcccccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHH
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 132 SVNKVR----DRKNELLQQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 132 ~L~~VR----~rK~~ll~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
....+. ..-..++.+.++.+.++....+++-.....+
T Consensus 1114 ~~~e~~~L~~~t~~~lw~~DL~~~~~~~~~~~~~~~~~~~~ 1154 (1388)
T PTZ00108 1114 KEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAK 1154 (1388)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 196
>PRK15067 ethanolamine ammonia lyase large subunit; Provisional
Probab=20.27 E-value=44 Score=31.88 Aligned_cols=15 Identities=13% Similarity=0.665 Sum_probs=11.3
Q ss_pred CCccccCCCchhHHHHHHH
Q 036652 52 GKLCQYCTEPFRMEQIIER 70 (240)
Q Consensus 52 gkl~e~~s~~~s~~~il~R 70 (240)
|..|.|.+ +++++.+
T Consensus 9 ~~~y~F~~----lk~vlak 23 (461)
T PRK15067 9 GRVYQFKD----LKEVLAK 23 (461)
T ss_pred CceEEeCc----HHHHHhh
Confidence 77888864 7888875
No 197
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=20.01 E-value=3e+02 Score=21.46 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 117 Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
+|++|+..+-......- -...-..++.++++.+..++..|++-...|...+..
T Consensus 58 fsL~eI~~ll~~~~~~~--~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~ 110 (131)
T cd04786 58 FSLDEIRQLLPADASNW--QHDELLAALERKVADIEALEARLAQNKAQLLVLIDL 110 (131)
T ss_pred CCHHHHHHHHhcccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666554321100 001123456666777777777777776666655533
Done!