Query 036652
Match_columns 240
No_of_seqs 272 out of 1659
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 7.6E-39 2.6E-43 230.3 0.7 73 2-76 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 4E-38 1.4E-42 232.1 0.6 75 2-78 1-75 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.3E-36 4.6E-41 227.6 -0.9 71 1-73 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 2.8E-36 9.7E-41 223.0 -2.8 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 1E-35 3.6E-40 224.1 -2.6 68 1-70 9-76 (103)
6 1dh3_A Transcription factor CR 79.3 7.2 0.00025 25.2 6.2 35 134-172 14-48 (55)
7 2jee_A YIIU; FTSZ, septum, coi 77.0 16 0.00056 25.6 9.7 43 117-164 3-45 (81)
8 2w6a_A ARF GTPase-activating p 76.5 14 0.00047 24.4 8.6 51 116-166 9-61 (63)
9 2dgc_A Protein (GCN4); basic d 76.1 9.4 0.00032 25.4 6.2 37 132-172 20-56 (63)
10 1dip_A Delta-sleep-inducing pe 75.5 4.3 0.00015 28.0 4.4 25 142-166 18-42 (78)
11 1m1j_C Fibrinogen gamma chain; 73.2 4.5 0.00015 36.9 5.4 60 50-112 11-70 (409)
12 1t2k_D Cyclic-AMP-dependent tr 69.3 20 0.0007 23.3 7.0 37 134-174 14-50 (61)
13 2wt7_A Proto-oncogene protein 67.8 23 0.00079 23.2 7.1 36 134-173 15-50 (63)
14 3nmd_A CGMP dependent protein 65.6 29 0.00098 23.8 6.8 44 122-170 21-64 (72)
15 1j1d_C Troponin I, TNI; THIN f 65.3 44 0.0015 25.6 9.8 33 112-144 53-85 (133)
16 1jnm_A Proto-oncogene C-JUN; B 63.6 28 0.00095 22.7 7.0 37 133-173 13-49 (62)
17 1ci6_A Transcription factor AT 62.6 30 0.001 22.7 7.3 38 133-174 14-51 (63)
18 3na7_A HP0958; flagellar bioge 62.2 39 0.0013 28.3 8.7 52 118-169 88-141 (256)
19 3oja_A Leucine-rich immune mol 61.9 76 0.0026 28.6 11.4 45 127-175 420-464 (487)
20 1m1j_B Fibrinogen beta chain; 60.7 66 0.0023 29.7 10.6 45 27-76 55-99 (464)
21 2oa5_A Hypothetical protein BQ 60.4 49 0.0017 24.4 7.8 58 83-140 8-67 (110)
22 2yy0_A C-MYC-binding protein; 60.2 19 0.00064 23.1 4.9 29 142-170 22-50 (53)
23 2dfs_A Myosin-5A; myosin-V, in 58.1 49 0.0017 33.8 10.1 25 149-173 1019-1043(1080)
24 1a93_B MAX protein, coiled coi 57.5 18 0.00061 21.1 3.9 27 138-164 6-32 (34)
25 1ytz_T Troponin T; muscle, THI 57.0 45 0.0016 24.5 7.2 34 111-144 36-69 (107)
26 1j1d_B Troponin T, TNT; THIN f 56.8 40 0.0014 24.7 6.8 32 113-144 38-69 (106)
27 2oqq_A Transcription factor HY 56.5 31 0.0011 21.0 5.6 26 144-169 15-40 (42)
28 3s9g_A Protein hexim1; cyclin 55.5 39 0.0013 24.5 6.3 24 145-168 64-87 (104)
29 2zqm_A Prefoldin beta subunit 55.0 38 0.0013 24.4 6.6 41 131-172 70-110 (117)
30 1j1e_C Troponin I, TNI; THIN f 54.5 76 0.0026 25.5 8.7 32 113-144 54-85 (180)
31 3hnw_A Uncharacterized protein 53.9 71 0.0024 24.4 11.1 20 88-107 66-85 (138)
32 3hnw_A Uncharacterized protein 53.7 72 0.0025 24.3 9.7 51 122-172 77-129 (138)
33 1deq_A Fibrinogen (alpha chain 53.4 69 0.0024 28.8 9.0 40 28-72 23-62 (390)
34 3thf_A Protein shroom; coiled- 52.8 24 0.00082 28.7 5.4 38 133-174 10-47 (190)
35 3gp4_A Transcriptional regulat 52.2 74 0.0025 24.0 8.2 57 116-173 59-115 (142)
36 2l5g_B Putative uncharacterize 49.2 43 0.0015 20.4 5.1 37 117-161 2-38 (42)
37 1go4_E MAD1 (mitotic arrest de 48.9 8.6 0.00029 28.1 2.0 20 141-160 77-96 (100)
38 3ol1_A Vimentin; structural ge 47.0 84 0.0029 23.2 7.7 45 124-169 62-106 (119)
39 1gk7_A Vimentin; intermediate 44.3 49 0.0017 19.7 5.4 28 142-169 9-36 (39)
40 1go4_E MAD1 (mitotic arrest de 42.9 52 0.0018 23.9 5.4 30 146-175 12-41 (100)
41 1deb_A APC protein, adenomatou 42.4 33 0.0011 21.7 3.7 25 83-107 3-27 (54)
42 1z56_A Ligase interacting fact 42.3 11 0.00038 31.7 2.0 60 9-74 117-176 (246)
43 1ci6_A Transcription factor AT 41.6 72 0.0024 20.8 5.7 31 140-170 31-61 (63)
44 3oq0_A DBF4, protein DNA52; DD 40.7 16 0.00055 28.6 2.6 53 23-81 46-104 (151)
45 1q08_A Zn(II)-responsive regul 40.4 75 0.0026 21.9 6.1 54 116-170 16-70 (99)
46 3a7p_A Autophagy protein 16; c 40.4 1.3E+02 0.0044 23.4 11.0 47 123-169 85-133 (152)
47 1t2k_D Cyclic-AMP-dependent tr 40.1 71 0.0024 20.5 5.4 29 141-169 31-59 (61)
48 1deb_A APC protein, adenomatou 40.0 56 0.0019 20.7 4.5 26 149-174 6-31 (54)
49 1hjb_A Ccaat/enhancer binding 39.7 96 0.0033 21.8 7.3 26 149-174 39-64 (87)
50 3s4r_A Vimentin; alpha-helix, 39.6 57 0.0019 23.1 5.2 24 147-170 17-40 (93)
51 3gpv_A Transcriptional regulat 38.4 1.1E+02 0.0039 23.0 7.3 55 116-171 73-127 (148)
52 4gfh_A DNA topoisomerase 2; to 37.5 74 0.0025 32.9 7.5 43 26-74 958-1000(1177)
53 2rpa_A Katanin P60 ATPase-cont 37.4 14 0.00049 25.6 1.6 35 29-76 16-50 (78)
54 3oja_B Anopheles plasmodium-re 36.1 2.5E+02 0.0087 25.6 14.6 30 140-169 524-553 (597)
55 2ky6_A Mediator of RNA polymer 35.6 39 0.0013 26.8 4.0 40 36-75 116-161 (166)
56 3nrf_A APAG protein; structura 35.5 6.9 0.00024 28.9 -0.3 41 12-57 22-62 (106)
57 3q4f_C DNA repair protein XRCC 35.3 76 0.0026 25.5 5.7 24 146-169 161-184 (186)
58 1gu4_A CAAT/enhancer binding p 35.2 1.1E+02 0.0037 21.0 7.3 26 149-174 39-64 (78)
59 2l16_A SEC-independent protein 34.4 1.1 3.7E-05 31.5 -4.6 30 43-76 16-45 (78)
60 1g6u_A Domain swapped dimer; d 34.3 77 0.0026 19.1 4.8 19 115-133 15-33 (48)
61 3na7_A HP0958; flagellar bioge 33.5 2E+02 0.0069 23.7 10.1 47 63-110 71-117 (256)
62 2l5g_A GPS2 protein, G protein 32.8 62 0.0021 19.1 3.6 21 146-166 15-35 (38)
63 1m1j_A Fibrinogen alpha subuni 31.4 2E+02 0.0069 26.5 8.5 116 38-172 31-158 (491)
64 1t6f_A Geminin; coiled-coil, c 31.4 81 0.0028 18.5 4.4 25 142-166 10-34 (37)
65 3w03_C DNA repair protein XRCC 31.2 88 0.003 25.2 5.6 30 143-172 149-178 (184)
66 1uii_A Geminin; human, DNA rep 31.0 1.2E+02 0.0042 21.1 5.6 26 143-168 50-75 (83)
67 1am9_A Srebp-1A, protein (ster 30.4 70 0.0024 21.9 4.4 26 148-173 52-77 (82)
68 2dfs_A Myosin-5A; myosin-V, in 29.9 4.1E+02 0.014 27.0 11.5 20 147-166 1024-1043(1080)
69 2zxx_A Geminin; coiled-coil, c 29.9 1.1E+02 0.0036 21.2 5.1 32 141-172 36-67 (79)
70 3azd_A Short alpha-tropomyosin 29.4 26 0.00089 20.7 1.6 27 146-172 4-30 (37)
71 3ghg_A Fibrinogen alpha chain; 28.7 3.7E+02 0.013 25.2 13.2 43 128-171 114-156 (562)
72 3twe_A Alpha4H; unknown functi 27.7 75 0.0026 16.9 3.4 21 87-107 5-25 (27)
73 1gd2_E Transcription factor PA 27.7 1.4E+02 0.0048 20.0 6.2 30 132-165 19-48 (70)
74 1wlq_A Geminin; coiled-coil; 2 26.7 1.6E+02 0.0056 20.5 5.6 28 142-169 41-68 (83)
75 3mq9_A Bone marrow stromal ant 24.4 3.5E+02 0.012 24.0 9.1 21 153-173 443-463 (471)
76 1jnm_A Proto-oncogene C-JUN; B 23.9 67 0.0023 20.8 3.1 27 143-169 33-59 (62)
77 1p9i_A Cortexillin I/GCN4 hybr 23.7 86 0.003 17.2 2.9 19 154-172 7-25 (31)
78 3ghg_B Fibrinogen beta chain; 23.6 3.2E+02 0.011 25.1 8.5 37 39-78 60-96 (461)
79 1m2d_A [2Fe-2S] ferredoxin; th 23.6 43 0.0015 24.1 2.3 33 39-73 59-91 (110)
80 2qez_A Ethanolamine ammonia-ly 23.5 27 0.00092 31.8 1.3 16 51-70 9-24 (455)
81 3s4r_A Vimentin; alpha-helix, 22.6 2E+02 0.007 20.1 9.2 32 140-171 50-81 (93)
82 1zps_A PRA-CH, phosphoribosyl- 22.2 21 0.00071 27.6 0.3 36 18-53 56-100 (138)
83 1r1p_A GRB2-related adaptor pr 22.2 70 0.0024 22.4 3.2 45 33-77 45-91 (100)
84 4dzn_A Coiled-coil peptide CC- 21.4 1.1E+02 0.0037 17.0 3.1 20 87-106 6-25 (33)
85 2zvv_Y Cyclin-dependent kinase 21.3 22 0.00074 19.1 0.1 11 15-25 15-25 (26)
86 1a92_A Delta antigen; leucine 21.2 1.3E+02 0.0043 18.9 3.7 23 143-165 18-40 (50)
87 2jo8_A Serine/threonine-protei 21.2 1.4E+02 0.0047 18.9 4.0 17 114-130 7-23 (51)
88 3gx8_A Monothiol glutaredoxin- 20.7 64 0.0022 23.5 2.8 29 45-73 18-46 (121)
89 3abq_A Ethanolamine ammonia-ly 20.2 27 0.00093 31.8 0.6 10 225-234 158-167 (453)
90 3uux_B Mitochondrial division 20.0 3.9E+02 0.013 22.3 9.3 58 115-173 147-204 (242)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=7.6e-39 Score=230.30 Aligned_cols=73 Identities=49% Similarity=0.785 Sum_probs=69.3
Q ss_pred CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccC
Q 036652 2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTG 76 (240)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~ 76 (240)
||+||+|++|||.++|||||||||+||||||+||||||||+||||||||+||+|+|+|+ +|++||+||+..++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~--~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC--CHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999986 69999999998764
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=4e-38 Score=232.07 Aligned_cols=75 Identities=48% Similarity=0.767 Sum_probs=71.8
Q ss_pred CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCC
Q 036652 2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTR 78 (240)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~ 78 (240)
||+||+|++|||.++|||||||||+||||||+||||||||+||||||||+|++|+|+|| +|+.||+||+..++..
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~--~~~~il~rY~~~~~~~ 75 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNEPH 75 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHCCSCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC--CHHHHHHHHHhcCccc
Confidence 89999999999999999999999999999999999999999999999999999999986 6999999999987653
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.3e-36 Score=227.60 Aligned_cols=71 Identities=45% Similarity=0.640 Sum_probs=68.0
Q ss_pred CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhh
Q 036652 1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLK 73 (240)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~ 73 (240)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+|| ++..||++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp--s~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP--KFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT--TTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC--CHHHHHHHhhC
Confidence 899999999999999999999999999999999999999999999999999999999998 57899988853
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=2.8e-36 Score=223.04 Aligned_cols=70 Identities=37% Similarity=0.582 Sum_probs=66.8
Q ss_pred CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHh
Q 036652 1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRL 72 (240)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~ 72 (240)
|||+||+|++|||.++|||||||||+||||||+||||||||+||||||||+|++|+|+|| +|..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~--~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR--KLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG--GGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC--CHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999997 6888888553
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1e-35 Score=224.10 Aligned_cols=68 Identities=38% Similarity=0.603 Sum_probs=66.0
Q ss_pred CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHH
Q 036652 1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIER 70 (240)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~R 70 (240)
|||+||+|++|||.++|+|||||||+||||||+||||||||+||||||||+|++|+|+|| +|..||++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~--~~~~vi~~ 76 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR--KLQPMITS 76 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG--GGGGGTSS
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc--cHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999987 68899886
No 6
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=79.29 E-value=7.2 Score=25.19 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 134 NKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 134 ~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
..-|.||...+ +.|..++..|+.+|..|..++...
T Consensus 14 ~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 14 RESRRKKKEYV----KSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567776666 899999999999999999888654
No 7
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.02 E-value=16 Score=25.56 Aligned_cols=43 Identities=23% Similarity=0.537 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSN 164 (240)
Q Consensus 117 Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~ 164 (240)
+|++=|..||..++.++..|- ++.-+|+.||.|...|.+++..
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999998775 4444557777776665555544
No 8
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=76.54 E-value=14 Score=24.38 Aligned_cols=51 Identities=25% Similarity=0.398 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRD--RKNELLQQQLDNLRRKERMLEEENSNMY 166 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~--rK~~ll~~qi~~lkkk~~~l~een~~L~ 166 (240)
..++.|..++...|-.+=.+|.. +-+.-+.+++..+++++..|+.||..|+
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 56788888888888777766653 3344566777888889999999998886
No 9
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=76.10 E-value=9.4 Score=25.36 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 132 SVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 132 ~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
+-.+.|.||.+-+ +.|..++..|+.+|..|..++..-
T Consensus 20 AArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 20 AARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667776666 899999999999999999887654
No 10
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=75.46 E-value=4.3 Score=28.00 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMY 166 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~ 166 (240)
++|.++|..|..+...|+.||..|+
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888887775
No 11
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.23 E-value=4.5 Score=36.93 Aligned_cols=60 Identities=8% Similarity=0.134 Sum_probs=42.2
Q ss_pred CCCCccccCCCchhHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 036652 50 STGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGE 112 (240)
Q Consensus 50 ~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~Ge 112 (240)
++..+=.|||....+.+.|.+|+.....++. ..+.+..++..+..+...|...+...+.+
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~~V~~~l~---~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRLTTDGELL---EIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCcccCCcCCCcccHHHHHHHHHhcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556667998888999999999986555442 34566667777777777766666555444
No 12
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.34 E-value=20 Score=23.25 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 134 NKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 134 ~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
.+-|.||.+.+ +.|..++..|+.+|..|..++..-..
T Consensus 14 ~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 14 SRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777666 88999999999999999988866543
No 13
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.77 E-value=23 Score=23.24 Aligned_cols=36 Identities=33% Similarity=0.441 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 134 NKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 134 ~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
.+-|.||.+.+ +.|..++..|+.+|..|..++..-.
T Consensus 15 ~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 15 AKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777666 8999999999999999999886543
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.61 E-value=29 Score=23.76 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 122 LDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 122 L~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
+.+|+..|......||.+... |+.+.+.....+++...|+.++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999888888876543 47888888888888888887763
No 15
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=65.32 E-value=44 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=29.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 112 EDLGSIPYDDLDQLEHELESSVNKVRDRKNELL 144 (240)
Q Consensus 112 edL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll 144 (240)
-+|++||.++|+.+=..|...+..+-+-|+.+-
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 379999999999999999999999998888775
No 16
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.56 E-value=28 Score=22.69 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 133 VNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 133 L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
-.+-|.||.+.+ +.|..++..|+.+|..|..++..-.
T Consensus 13 A~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 13 ASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777666 8999999999999999999886643
No 17
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.59 E-value=30 Score=22.74 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 133 VNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 133 L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
-.+-|.+|..-+ +.+..++..|+.+|..|..++.....
T Consensus 14 A~R~R~KKk~~~----~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 14 ATRYRQKKRAEQ----EALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444 88888888888899888888866544
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=62.25 E-value=39 Score=28.27 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 118 PYDDLDQLEHELESSVNKVRDRKNELL--QQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 118 s~~EL~~LE~~Le~~L~~VR~rK~~ll--~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+.+|+..|...++..-.++...-.+++ +++++.++.....+++.-..+...+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888877666665544443 2345555554444444444444444
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.87 E-value=76 Score=28.59 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036652 127 HELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAA 175 (240)
Q Consensus 127 ~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~~ 175 (240)
..+...+...|.+..+.+ +..+..+..+.++|.++...+.+....
T Consensus 420 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDW----DMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhh----hhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 334555556666654444 778888888999999998888776543
No 20
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=60.66 E-value=66 Score=29.67 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=27.3
Q ss_pred chhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccC
Q 036652 27 GLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTG 76 (240)
Q Consensus 27 GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~ 76 (240)
|+-||..|.. -||.-|.+. ++.+-.|||....+.+.|-+|+....
T Consensus 55 ~~~~~~~~~~--~~a~~c~~~---~~~~G~~CPTtC~l~D~L~k~q~~V~ 99 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGCKHP---LDELGVLCPTGCELQTTLLKQEKTVK 99 (464)
T ss_dssp --------CC--CCCSCEECS---STTTCEEEECTTHHHHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCcccc---CCCccCcCCCccHHHHHHHHhhhhhH
Confidence 5667777776 777777654 66677788877788888888877533
No 21
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=60.36 E-value=49 Score=24.44 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036652 83 DSREQIFNELAVLRKETRRLQLSMRRY--TGEDLGSIPYDDLDQLEHELESSVNKVRDRK 140 (240)
Q Consensus 83 ~~~e~l~~el~kLk~e~~~Lq~~~R~~--~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK 140 (240)
...|.|..++.+|+-||..|.+.++.- .+.+=.-|+..+=..+....-.+|...-.+|
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999752 1134567888887777777666666555544
No 22
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.23 E-value=19 Score=23.08 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
+.|..+.+.|+.|+..|.+++..|..++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667888888888888888887764
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=58.11 E-value=49 Score=33.76 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
+.|+.++..|+++|..|+.++.+..
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999998876654
No 24
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=57.46 E-value=18 Score=21.11 Aligned_cols=27 Identities=37% Similarity=0.633 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 138 DRKNELLQQQLDNLRRKERMLEEENSN 164 (240)
Q Consensus 138 ~rK~~ll~~qi~~lkkk~~~l~een~~ 164 (240)
.||..-..+.|+.++++...|+++-..
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 367777777888888887777776543
No 25
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=56.97 E-value=45 Score=24.47 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 111 GEDLGSIPYDDLDQLEHELESSVNKVRDRKNELL 144 (240)
Q Consensus 111 GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll 144 (240)
.-+|++|+.++|+++=..|...+..+-+-|+.+-
T Consensus 36 pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 36 PLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3489999999999999999999998888888765
No 26
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=56.76 E-value=40 Score=24.75 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 113 DLGSIPYDDLDQLEHELESSVNKVRDRKNELL 144 (240)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll 144 (240)
+|++||.++|+.+=..|...+..+-+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 88999999999999999999999988888775
No 27
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=56.50 E-value=31 Score=20.99 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 144 LQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 144 l~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+......|..++..|+.||..|++.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34445778888888899999888765
No 28
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=55.53 E-value=39 Score=24.51 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 145 QQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 145 ~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
..+|..|..++..|..||..|..+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888999888655
No 29
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.03 E-value=38 Score=24.40 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 131 SSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 131 ~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
.++..+..++. .+...|+.|.++...++.+-..|...+.+.
T Consensus 70 ea~~~L~~~~e-~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 70 KAVAELKEKIE-TLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443 335667777777777777777777666543
No 30
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=54.52 E-value=76 Score=25.47 Aligned_cols=32 Identities=22% Similarity=0.550 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 113 DLGSIPYDDLDQLEHELESSVNKVRDRKNELL 144 (240)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll 144 (240)
+|++|+.++|+.+=..|...+..+-+-|+.+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 89999999999999999999999999888775
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.92 E-value=71 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 036652 88 IFNELAVLRKETRRLQLSMR 107 (240)
Q Consensus 88 l~~el~kLk~e~~~Lq~~~R 107 (240)
+-.++-+++.+++.|+..+.
T Consensus 66 iadEl~k~~~~~~~L~~~l~ 85 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIE 85 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666554443
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.68 E-value=72 Score=24.33 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 122 LDQLEHELESSVNKVRDRKNELLQQQ--LDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 122 L~~LE~~Le~~L~~VR~rK~~ll~~q--i~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
...|+..++..-..+-+=|.+++..+ ++.++++...|.+++..|..++..-
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443 3445555566666666666555443
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.44 E-value=69 Score=28.77 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=26.3
Q ss_pred hhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHh
Q 036652 28 LLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRL 72 (240)
Q Consensus 28 L~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~ 72 (240)
|+-+|+.-|---||..|+ ...+=.-|+.-+.|+.+|++..
T Consensus 23 ~vE~~~s~Ck~~d~~~C~-----DeDwG~kCPsGCrLqg~Ldk~e 62 (390)
T 1deq_A 23 LVERQQSACKETGWPFCS-----DEDWNTKCPSGCRMKGLIDEVD 62 (390)
T ss_pred hhhhhccccCCCCCCCCc-----hhhccCCCCccchHHHHHHHhh
Confidence 344555555555666666 4555556666678999999875
No 34
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=52.83 E-value=24 Score=28.65 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 133 VNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 133 L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
-+.|..+|.+++ +.+++|...|.++...|...+..+..
T Consensus 10 ~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~~ 47 (190)
T 3thf_A 10 TNLIKQKMDELI----KHLNQKIVSLKREQQTISEECSANDR 47 (190)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999 99999999999999999998877654
No 35
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=52.24 E-value=74 Score=24.05 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
++|++|+..+-...+.+-..+..+ ..++.++++.+..+...|+.....|...+...+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888776554432222222 356777788888888888887777777776544
No 36
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.17 E-value=43 Score=20.41 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEE 161 (240)
Q Consensus 117 Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~ee 161 (240)
+|-+||.+=-+.++.-+..++. +|..|++|.+.|++.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~--------kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQ--------QISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence 4556666655556555554443 457778888877765
No 37
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.93 E-value=8.6 Score=28.12 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036652 141 NELLQQQLDNLRRKERMLEE 160 (240)
Q Consensus 141 ~~ll~~qi~~lkkk~~~l~e 160 (240)
.+.|..+++.|+.+++.|++
T Consensus 77 ~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 77 HSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34555666666666666554
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.04 E-value=84 Score=23.18 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 124 QLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 124 ~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
.+-..+++-+..+|.--+......++ |..++..|.+|-..|+.-.
T Consensus 62 ~~r~~~E~di~~lrK~lD~~~l~r~d-LE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 62 LQREEAENTLQSFRQDVDNASLARLD-LERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544444444332 6677777777777765433
No 39
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=44.27 E-value=49 Score=19.70 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+-+.+....+-.|++.|+.+|..|..++
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667788999999999998776
No 40
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.90 E-value=52 Score=23.91 Aligned_cols=30 Identities=30% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036652 146 QQLDNLRRKERMLEEENSNMYRWIQEHRAA 175 (240)
Q Consensus 146 ~qi~~lkkk~~~l~een~~L~~~l~~~~~~ 175 (240)
++++.+++++..|+.||..|+.....-...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998888765543
No 41
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.44 E-value=33 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=21.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhh
Q 036652 83 DSREQIFNELAVLRKETRRLQLSMR 107 (240)
Q Consensus 83 ~~~e~l~~el~kLk~e~~~Lq~~~R 107 (240)
+.|++|-.+++-|+++|..|++++.
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4588899999999999999998765
No 42
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=42.25 E-value=11 Score=31.73 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=10.4
Q ss_pred eEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhc
Q 036652 9 KRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKV 74 (240)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~ 74 (240)
-.|++...=++|+.||-.||..|..+|++--+-+=++=.|--+.+++..++ .+-++|..+
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L~q~i~------~ln~k~~~~ 176 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKLYKDIC------CVNDSYRNI 176 (246)
T ss_dssp ------------------------------------------CTTSGGGTT------HHHHHHHHT
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHHHHHHH------HHHHHHHHH
Confidence 445665666899999999999999999877666666666777777776654 234556553
No 43
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.57 E-value=72 Score=20.83 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 140 KNELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 140 K~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
+.+-|..+...|+.++..|+.|+..|...|.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666677788888888888888876653
No 44
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=40.71 E-value=16 Score=28.62 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=34.3
Q ss_pred ccccchhhhhh-----hhhcccCCceEEEeec-CCCCccccCCCchhHHHHHHHHhhccCCCCCC
Q 036652 23 KRRAGLLKKTH-----ELSVLCDAQIGLIIFS-STGKLCQYCTEPFRMEQIIERRLKVTGTRIPE 81 (240)
Q Consensus 23 KRr~GL~KKA~-----ELsvLCda~V~lIifS-~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~~ 81 (240)
+|+.-|+|||- .+..--|.+|.+||-. |..+...|++ .+||.|=++. +.++|.
T Consensus 46 ~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~-----~DIL~rAr~~-~mKIWs 104 (151)
T 3oq0_A 46 DKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKD-----TDILSRAKKN-YMKVWS 104 (151)
T ss_dssp HHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCT-----TSHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCc-----chHHHHHHHc-CCeeec
Confidence 35556777663 3456678889999955 3445555654 3577766554 678997
No 45
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=40.41 E-value=75 Score=21.91 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVN-KVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~-~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
++|++|+..+-......-. .+ ..-..++.+++..+..+...|+.....|...+.
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888764432110 01 122356677777777777777777766666553
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.41 E-value=1.3e+02 Score=23.45 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 036652 123 DQLEHELESSVNKVRDRKNELLQQ--QLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 123 ~~LE~~Le~~L~~VR~rK~~ll~~--qi~~lkkk~~~l~een~~L~~~l 169 (240)
.+|+..|...-+.+-.-+++++.- +...+..|.+.|++||..|...+
T Consensus 85 ~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 85 RRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443 34457788999999998887654
No 47
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.07 E-value=71 Score=20.52 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 141 NELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 141 ~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
...+..+...|+.++..|.+++..|...|
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666778888888888888877654
No 48
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=40.05 E-value=56 Score=20.70 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
+.|-+++..|..||..|++++..+..
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 44556677777888999988877543
No 49
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.74 E-value=96 Score=21.79 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
..+..++..|+.+|..|..++.+...
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888876544
No 50
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.64 E-value=57 Score=23.13 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 147 QLDNLRRKERMLEEENSNMYRWIQ 170 (240)
Q Consensus 147 qi~~lkkk~~~l~een~~L~~~l~ 170 (240)
....+=.|++.|+.+|..|..++.
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555543
No 51
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=38.42 E-value=1.1e+02 Score=23.04 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 116 SIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 116 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
++|++|+..+-.....+-..+.. -..++.++++.+..+...|+.....|...+..
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888877654433222222 23466777777888888777777777666644
No 52
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=37.52 E-value=74 Score=32.86 Aligned_cols=43 Identities=19% Similarity=0.399 Sum_probs=29.3
Q ss_pred cchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhc
Q 036652 26 AGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKV 74 (240)
Q Consensus 26 ~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~ 74 (240)
++|+|+-. |..-.++ ..+++|.+.|+++.|.+ +++||+.|-.+
T Consensus 958 ~~L~k~t~-L~~s~~~-~Nm~~~d~~g~i~k~~~----l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERFK-LISPISL-MNMVAFDPHGKIKKYNS----VNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHTT-CEEEECC-SCCEEECTTSCEEECSS----HHHHHHHHHHH
T ss_pred HhHHHhcc-Ccceecc-eEEEEEcCCCCccCcCC----HHHHHHHHHHH
Confidence 45555543 4333322 15788999999999975 68999988764
No 53
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=37.39 E-value=14 Score=25.62 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=29.4
Q ss_pred hhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccC
Q 036652 29 LKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTG 76 (240)
Q Consensus 29 ~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~ 76 (240)
+|+|+|.+.+++=|.|++.|. .+.+-|.||-....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-------------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-------------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-------------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH-------------HHHHHHHHHHHhcC
Confidence 689999999999888888764 57888899988665
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.12 E-value=2.5e+02 Score=25.60 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 140 KNELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 140 K~~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+.+.+.++++..++....++++...|...+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHH
Confidence 333344444444444444444444444444
No 55
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=35.59 E-value=39 Score=26.80 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=29.4
Q ss_pred hcccCCceEEEeecCCCCcc-ccCCCc-----hhHHHHHHHHhhcc
Q 036652 36 SVLCDAQIGLIIFSSTGKLC-QYCTEP-----FRMEQIIERRLKVT 75 (240)
Q Consensus 36 svLCda~V~lIifS~~gkl~-e~~s~~-----~s~~~il~RY~~~~ 75 (240)
+.-|++.|-+++|||.-+.| -|.+.+ ..+.+||+.|+...
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~q 161 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQVQ 161 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999988876 577653 24667777776543
No 56
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=35.50 E-value=6.9 Score=28.85 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=30.8
Q ss_pred cCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCcccc
Q 036652 12 ENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQY 57 (240)
Q Consensus 12 en~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~ 57 (240)
.+..-...||-=.=.-|.+|.-+||.+| ++.|+|.|+-+-.
T Consensus 22 ~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 22 GDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp TTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred CCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 3444455666666778889999999776 9999999986654
No 57
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=35.35 E-value=76 Score=25.54 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 146 QQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 146 ~qi~~lkkk~~~l~een~~L~~~l 169 (240)
.+|..|+.+...|++||.+|..+-
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566889999999999999997653
No 58
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.24 E-value=1.1e+02 Score=21.04 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 149 DNLRRKERMLEEENSNMYRWIQEHRA 174 (240)
Q Consensus 149 ~~lkkk~~~l~een~~L~~~l~~~~~ 174 (240)
..+..++..|+.+|..|..++.....
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778889999999999988876543
No 59
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=34.39 E-value=1.1 Score=31.47 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=23.1
Q ss_pred eEEEeecCCCCccccCCCchhHHHHHHHHhhccC
Q 036652 43 IGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTG 76 (240)
Q Consensus 43 V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~ 76 (240)
|+||||+| +|++++.. ++-+.+..|++...
T Consensus 16 VaLlvfGp-kkLP~l~r---~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR---AAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCT-TTHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH---HHHHHHHHHHHHHH
Confidence 67899996 69999885 57778888877643
No 60
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=34.26 E-value=77 Score=19.05 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 036652 115 GSIPYDDLDQLEHELESSV 133 (240)
Q Consensus 115 ~~Ls~~EL~~LE~~Le~~L 133 (240)
+++|.+||-.||..|+..-
T Consensus 15 egfspeelaaleselqale 33 (48)
T 1g6u_A 15 EGFSPEELAALESELQALE 33 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 3588999999998876443
No 61
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.55 E-value=2e+02 Score=23.69 Aligned_cols=47 Identities=6% Similarity=0.018 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccC
Q 036652 63 RMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYT 110 (240)
Q Consensus 63 s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~ 110 (240)
.+..-+++|+.-.... .+...+..|..+++.++.++..++..+..++
T Consensus 71 ~~~~ri~~~~~~l~~v-~~~kE~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 71 DTNAKIASIQKKMSEI-KSERELRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666676543221 1223477788888888888888877765543
No 62
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.76 E-value=62 Score=19.14 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036652 146 QQLDNLRRKERMLEEENSNMY 166 (240)
Q Consensus 146 ~qi~~lkkk~~~l~een~~L~ 166 (240)
+||..++.|...|.+|--.|-
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777665553
No 63
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.44 E-value=2e+02 Score=26.49 Aligned_cols=116 Identities=13% Similarity=0.116 Sum_probs=62.6
Q ss_pred ccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHh----------hh
Q 036652 38 LCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLS----------MR 107 (240)
Q Consensus 38 LCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~----------~R 107 (240)
--||..| +.+.+=.-||....|+.+|++-.+ .+...|++|+..+..++.. +.
T Consensus 31 ~~D~pgC-----aDeDwGvkCPSGCrLqglL~kqer-------------dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~ 92 (491)
T 1m1j_A 31 EKNWPIC-----VDDDWGTKCPSGCRMQGIIDDTDQ-------------NYSQRIDNIRQQLADSQNKYKTSNRVIVETI 92 (491)
T ss_dssp TTCCCBC-----CTTSTTTEECCSTTHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred cCCCCCC-----ccccccCCCCCccchhhHHHHhhh-------------hHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3455555 566666666666788888886433 2333344444444433321 11
Q ss_pred ccCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 108 RYTGEDLGSIP--YDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 108 ~~~GedL~~Ls--~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
.+|.+++.... =.=..++-..|+.-+.-|+.+-+..+ +.|..||..++.+..+-++|...+..+
T Consensus 93 ~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 93 NILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-NRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110000 01123444556666666777766666 777788888877777777777666544
No 64
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=31.40 E-value=81 Score=18.46 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMY 166 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~ 166 (240)
+.+...|+.-...+..|.++|..|.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445555666666677777777664
No 65
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=31.20 E-value=88 Score=25.17 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 143 LLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 143 ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
.+.+.+..|+.++..|+++|.+|+.+....
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777889999999999999998887543
No 66
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=30.96 E-value=1.2e+02 Score=21.14 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 143 LLQQQLDNLRRKERMLEEENSNMYRW 168 (240)
Q Consensus 143 ll~~qi~~lkkk~~~l~een~~L~~~ 168 (240)
-|.++|+.++..+..|.++|..|+.-
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666543
No 67
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.42 E-value=70 Score=21.92 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 148 LDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 148 i~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
|..|+..+..|++++..|...+.+..
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46788888999999999998887654
No 68
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.94 E-value=4.1e+02 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036652 147 QLDNLRRKERMLEEENSNMY 166 (240)
Q Consensus 147 qi~~lkkk~~~l~een~~L~ 166 (240)
.+..|++....|+++...|.
T Consensus 1024 kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 69
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.85 E-value=1.1e+02 Score=21.25 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 141 NELLQQQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 141 ~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
++.|..+|+.++..+..|.++|..|.....+.
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888999998886555443
No 70
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=29.41 E-value=26 Score=20.65 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 146 QQLDNLRRKERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 146 ~qi~~lkkk~~~l~een~~L~~~l~~~ 172 (240)
+.++.+++|++.|+.+...+...+...
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999988888877776554
No 71
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.68 E-value=3.7e+02 Score=25.20 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 128 ELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 128 ~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
.|+..+..|+.+-+..+ ++|..|+..++.+..+-++|.-.+..
T Consensus 114 ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555 56666666666666666666555543
No 72
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.69 E-value=75 Score=16.89 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 036652 87 QIFNELAVLRKETRRLQLSMR 107 (240)
Q Consensus 87 ~l~~el~kLk~e~~~Lq~~~R 107 (240)
.+..|++-|++...+|++.+|
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345555556665555555544
No 73
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.66 E-value=1.4e+02 Score=20.01 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 132 SVNKVRDRKNELLQQQLDNLRRKERMLEEENSNM 165 (240)
Q Consensus 132 ~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L 165 (240)
+-...|.||.+-| ..|..++..|+..+..|
T Consensus 19 AQRafReRK~~~i----~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 19 AQRAFRKRKEDHL----KALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4456677777666 55555555554444433
No 74
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.74 E-value=1.6e+02 Score=20.48 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 142 ELLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 142 ~ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
+-|...|+.++..+..|.++|..|+.-.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888999999886443
No 75
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.38 E-value=3.5e+02 Score=23.96 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036652 153 RKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 153 kk~~~l~een~~L~~~l~~~~ 173 (240)
+|++.|+.|-..|.++|++..
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665544
No 76
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.91 E-value=67 Score=20.76 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 143 LLQQQLDNLRRKERMLEEENSNMYRWI 169 (240)
Q Consensus 143 ll~~qi~~lkkk~~~l~een~~L~~~l 169 (240)
-+..+...|+..+..|.+++..|...|
T Consensus 33 ~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 33 TLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777776555
No 77
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=23.73 E-value=86 Score=17.17 Aligned_cols=19 Identities=26% Similarity=0.213 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036652 154 KERMLEEENSNMYRWIQEH 172 (240)
Q Consensus 154 k~~~l~een~~L~~~l~~~ 172 (240)
-...|+-||++|..++++.
T Consensus 7 llasleaenkqlkakveel 25 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566788888888777653
No 78
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.63 E-value=3.2e+02 Score=25.11 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=28.7
Q ss_pred cCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCC
Q 036652 39 CDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTR 78 (240)
Q Consensus 39 Cda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~ 78 (240)
-||.-|.+. +..+=.||+....+.+.|-+|+.....+
T Consensus 60 pd~g~c~~~---~~~fG~yCPTtCglad~L~kye~~V~~d 96 (461)
T 3ghg_B 60 PDAGGCLHA---DPDLGVLCPTGCQLQEALLQQERPIRNS 96 (461)
T ss_dssp CCCCCCBCS---STTTCBCEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccc---CcccCCcCCCcchHHHHHHhcccchhhH
Confidence 788888765 4455569998889999999999865543
No 79
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=23.55 E-value=43 Score=24.06 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=24.1
Q ss_pred cCCceEEEeecCCCCccccCCCchhHHHHHHHHhh
Q 036652 39 CDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLK 73 (240)
Q Consensus 39 Cda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~ 73 (240)
|+---.|+|+ |+|..|...+| ..+.+||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~-e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKP-EDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCG-GGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCH-HHHHHHHHHHHH
Confidence 5444445555 88988888877 579999999753
No 80
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=23.46 E-value=27 Score=31.84 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=11.7
Q ss_pred CCCccccCCCchhHHHHHHH
Q 036652 51 TGKLCQYCTEPFRMEQIIER 70 (240)
Q Consensus 51 ~gkl~e~~s~~~s~~~il~R 70 (240)
.|+.|.|.+ +++++.+
T Consensus 9 ~~~~y~F~~----lk~vlAk 24 (455)
T 2qez_A 9 FGHTYQFKS----ITDVLAK 24 (455)
T ss_dssp SSSEEECSC----HHHHHHH
T ss_pred CCeeEeeCC----HHHHHhh
Confidence 467788864 7888875
No 81
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.56 E-value=2e+02 Score=20.12 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 140 KNELLQQQLDNLRRKERMLEEENSNMYRWIQE 171 (240)
Q Consensus 140 K~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 171 (240)
-..++...|..|++++..+..++..|.-++..
T Consensus 50 ~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 50 LGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778899999999999999988777654
No 82
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=22.21 E-value=21 Score=27.57 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=28.0
Q ss_pred cccccccccch---------hhhhhhhhcccCCceEEEeecCCCC
Q 036652 18 QVTFSKRRAGL---------LKKTHELSVLCDAQIGLIIFSSTGK 53 (240)
Q Consensus 18 qvTfsKRr~GL---------~KKA~ELsvLCda~V~lIifS~~gk 53 (240)
-+-||+-|+.| +-+..|+.+-||.|+-|+..-+.|.
T Consensus 56 ~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 56 AHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp CEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred EEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 34467767755 4467899999999999999988884
No 83
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=22.15 E-value=70 Score=22.36 Aligned_cols=45 Identities=7% Similarity=0.129 Sum_probs=28.7
Q ss_pred hhhhcccCCce--EEEeecCCCCccccCCCchhHHHHHHHHhhccCC
Q 036652 33 HELSVLCDAQI--GLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGT 77 (240)
Q Consensus 33 ~ELsvLCda~V--~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~ 77 (240)
.=|||.++-.| ..|...++|+.+-....-.++.++|+-|...+-.
T Consensus 45 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l~ 91 (100)
T 1r1p_A 45 FSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTSIS 91 (100)
T ss_dssp EEEEEECSSSEEEEECEECTTCCEESSSCEESSHHHHHHHHTTSCSS
T ss_pred EEEEEEECCEEEEEEEEEcCCCCEEEeCCEeCCHHHHHHHHHhCCCC
Confidence 56788887666 4444556676442222224799999999987643
No 84
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.44 E-value=1.1e+02 Score=16.99 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 036652 87 QIFNELAVLRKETRRLQLSM 106 (240)
Q Consensus 87 ~l~~el~kLk~e~~~Lq~~~ 106 (240)
-+.+|+..|++++..|.-++
T Consensus 6 alkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776554
No 85
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=21.33 E-value=22 Score=19.13 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=8.0
Q ss_pred CCccccccccc
Q 036652 15 TTRQVTFSKRR 25 (240)
Q Consensus 15 ~~RqvTfsKRr 25 (240)
+.|.+.|+||+
T Consensus 15 sKRRlvf~~rk 25 (26)
T 2zvv_Y 15 SKRRLIFSXXX 25 (26)
T ss_pred hhceEEEEecc
Confidence 46777788876
No 86
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=21.18 E-value=1.3e+02 Score=18.86 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036652 143 LLQQQLDNLRRKERMLEEENSNM 165 (240)
Q Consensus 143 ll~~qi~~lkkk~~~l~een~~L 165 (240)
-+...+-..+++++.|+++|-=|
T Consensus 18 eler~lrk~kk~iKklEdeNPWL 40 (50)
T 1a92_A 18 ELERDLRKLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHhhhccCCch
Confidence 34444556677777777777443
No 87
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=21.17 E-value=1.4e+02 Score=18.91 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHHHH
Q 036652 114 LGSIPYDDLDQLEHELE 130 (240)
Q Consensus 114 L~~Ls~~EL~~LE~~Le 130 (240)
|..||++||...-..|+
T Consensus 7 Lk~ls~eEL~~rl~~Ld 23 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALD 23 (51)
T ss_dssp GGGSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHcc
Confidence 56779999877665555
No 88
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=20.73 E-value=64 Score=23.50 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=23.8
Q ss_pred EEeecCCCCccccCCCchhHHHHHHHHhh
Q 036652 45 LIIFSSTGKLCQYCTEPFRMEQIIERRLK 73 (240)
Q Consensus 45 lIifS~~gkl~e~~s~~~s~~~il~RY~~ 73 (240)
|+|||-+-....||+-+..++++|+.+.-
T Consensus 18 Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv 46 (121)
T 3gx8_A 18 VVLFMKGTPEFPKCGFSRATIGLLGNQGV 46 (121)
T ss_dssp EEEEESBCSSSBCTTHHHHHHHHHHHHTB
T ss_pred EEEEEeccCCCCCCccHHHHHHHHHHcCC
Confidence 88899766667788888899999999853
No 89
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=20.21 E-value=27 Score=31.84 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=8.5
Q ss_pred cCcCCCCCCC
Q 036652 225 YHHLQLAQPN 234 (240)
Q Consensus 225 ~f~~qp~qpn 234 (240)
+.|||||||-
T Consensus 158 s~RlQPNhPT 167 (453)
T 3abq_A 158 SARLQPNDTR 167 (453)
T ss_dssp EEEECCCCTT
T ss_pred ecccCCCCCC
Confidence 4899999993
No 90
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.02 E-value=3.9e+02 Score=22.34 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652 115 GSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR 173 (240)
Q Consensus 115 ~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 173 (240)
.+.|+..|..+-..+..-|.-+--||. +...+|..+-.|+..|....+.+..+|+..+
T Consensus 147 ~SYSl~~Lkk~~~~i~~~LelL~IRK~-ma~sEI~EID~KI~~L~~mR~~vl~RLA~lE 204 (242)
T 3uux_B 147 SSYSPSALKSFSQTLVNSLEFLNIQKN-STLSEIRDIEVEVENLRQKKEKLLGKIANIE 204 (242)
T ss_dssp GSCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999998888888877775 6778899999999999998888888886544
Done!