BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036653
         (487 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 54/73 (73%)

Query: 336 KFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAV 395
           + VVH      I  DGYRWRKYGQK VKG+P PR+YYRC+S GCPV+KH+E +  +T  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 396 IITYKGVHDHDMP 408
           I TY+G HDHDMP
Sbjct: 62  ITTYEGKHDHDMP 74



 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDP 231
           V+DGY WRKYGQK VK     RSYY+C+   C  KK +E S H   ++    +G H HD 
Sbjct: 14  VNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73

Query: 232 P 232
           P
Sbjct: 74  P 74


>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 53/71 (74%)

Query: 339 VHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIIT 398
           V    +V +  DGYRWRKYGQK+VKGNP PR+YY+CT+ GC VRKH+E A  +  AV+ T
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67

Query: 399 YKGVHDHDMPV 409
           Y+G H+HD+P 
Sbjct: 68  YEGKHNHDLPA 78



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDP 231
           + DGY WRKYGQK VK     RSYYKCT   C  +K +E +      +    +G H+HD 
Sbjct: 17  LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL 76

Query: 232 P 232
           P
Sbjct: 77  P 77


>pdb|3LW1|A Chain A, Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptide
          Length = 253

 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 270 TSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPE 310
           T S+DS +DS L+ +  R NL+ +  D       E P EP+
Sbjct: 212 TLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGEAPQEPQ 252


>pdb|1YWT|A Chain A, Crystal Structure Of The Human Sigma Isoform Of 14-3-3 In
           Complex With A Mode-1 Phosphopeptide
 pdb|1YWT|B Chain B, Crystal Structure Of The Human Sigma Isoform Of 14-3-3 In
           Complex With A Mode-1 Phosphopeptide
 pdb|1YZ5|A Chain A, The Crystal Structure Of 14-3-3-Sigma At 2.8 Angstrom
           Resolution
 pdb|1YZ5|B Chain B, The Crystal Structure Of 14-3-3-Sigma At 2.8 Angstrom
           Resolution
          Length = 248

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 270 TSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPE 310
           T S+DS +DS L+ +  R NL+ +  D       E P EP+
Sbjct: 207 TLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGEAPQEPQ 247


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.126    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,709,591
Number of Sequences: 62578
Number of extensions: 545567
Number of successful extensions: 1115
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 12
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)