Query 036653
Match_columns 487
No_of_seqs 339 out of 1152
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 6.9E-35 2.3E-39 239.6 7.2 75 335-409 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.8E-34 6.3E-39 238.1 5.4 75 335-409 4-78 (78)
3 1wj2_A Probable WRKY transcrip 100.0 7.4E-30 2.5E-34 210.7 7.2 63 171-233 15-78 (78)
4 2ayd_A WRKY transcription fact 100.0 8.9E-30 3.1E-34 209.3 7.1 63 171-233 12-75 (76)
5 2rpr_A Flywch-type zinc finger 82.9 1.2 4.2E-05 36.1 4.2 60 335-407 11-73 (87)
6 2rpr_A Flywch-type zinc finger 82.2 0.98 3.3E-05 36.7 3.4 48 173-232 24-74 (87)
7 1xiw_B T-cell surface glycopro 25.2 33 0.0011 27.5 2.0 49 174-229 17-75 (79)
8 1cz6_A Protein (androctonin); 23.9 26 0.0009 23.0 0.9 8 195-202 16-23 (26)
9 1xiw_A T-cell surface glycopro 13.9 77 0.0026 27.4 1.9 36 164-199 23-77 (105)
10 1odh_A MGCM1; transcription fa 12.7 1E+02 0.0035 28.7 2.5 18 215-232 140-157 (174)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=6.9e-35 Score=239.63 Aligned_cols=75 Identities=59% Similarity=1.130 Sum_probs=72.8
Q ss_pred CceEEeecCCccccCCCcccccccccccCCCCCCCcccccccCCCCccceeeeccCCCCeEEEEEeeeccCCCCC
Q 036653 335 PKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPV 409 (487)
Q Consensus 335 ~~~vv~t~sd~~~~dDGy~WRKYGQK~vkgn~~pRsYYrCt~~gC~arK~Ver~~~d~~~~~~tY~G~HnH~~P~ 409 (487)
.||+|++.+++++++|||+|||||||.|||++|||+|||||++||+|+|+|||+.+|+.+|+|||+|.|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.8e-34 Score=238.07 Aligned_cols=75 Identities=55% Similarity=1.080 Sum_probs=69.4
Q ss_pred CceEEeecCCccccCCCcccccccccccCCCCCCCcccccccCCCCccceeeeccCCCCeEEEEEeeeccCCCCC
Q 036653 335 PKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPV 409 (487)
Q Consensus 335 ~~~vv~t~sd~~~~dDGy~WRKYGQK~vkgn~~pRsYYrCt~~gC~arK~Ver~~~d~~~~~~tY~G~HnH~~P~ 409 (487)
.+++|++.+++++++|||+|||||||.|||++|||+|||||++||+|+|+|||+.+|+.+|+|||+|.|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999874
No 3
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=7.4e-30 Score=210.66 Aligned_cols=63 Identities=43% Similarity=0.786 Sum_probs=58.7
Q ss_pred ccCCCccccccccccccCCCCCCCceeeeeeCCeeeee-eEecCCCCcEEEEEeecCCCCCCCC
Q 036653 171 TPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDPPR 233 (487)
Q Consensus 171 ~~~~DGy~WRKYGQK~vkgs~~pRsYYrCt~~~C~akK-~~~~~~dg~~~~i~Y~G~HnH~~p~ 233 (487)
.+++|||+|||||||.|||++|||+|||||+.+|+|+| |++.+.|+.++.|||+|.|||+.|.
T Consensus 15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 35899999999999999999999999999999999988 6677889999999999999999883
No 4
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=8.9e-30 Score=209.30 Aligned_cols=63 Identities=46% Similarity=0.844 Sum_probs=58.8
Q ss_pred ccCCCccccccccccccCCCCCCCceeeeeeCCeeeee-eEecCCCCcEEEEEeecCCCCCCCC
Q 036653 171 TPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDPPR 233 (487)
Q Consensus 171 ~~~~DGy~WRKYGQK~vkgs~~pRsYYrCt~~~C~akK-~~~~~~dg~~~~i~Y~G~HnH~~p~ 233 (487)
..++|||+|||||||.|||++|||+|||||+.+|+|+| |++..+|+.+++|||+|.|||+.|.
T Consensus 12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 46799999999999999999999999999999999988 6677789999999999999999885
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=82.91 E-value=1.2 Score=36.08 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=38.4
Q ss_pred CceEEeecCCccccCCCcccccccccccCCCCCCCccccccc---CCCCccceeeeccCCCCeEEEEEeeeccCCC
Q 036653 335 PKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTS---AGCPVRKHIETAVDNTSAVIITYKGVHDHDM 407 (487)
Q Consensus 335 ~~~vv~t~sd~~~~dDGy~WRKYGQK~vkgn~~pRsYYrCt~---~gC~arK~Ver~~~d~~~~~~tY~G~HnH~~ 407 (487)
..+|....+..-++-|||...+--+ ...+.|.+|+. .+|.|+=.... + . +...+.|||++
T Consensus 11 ~~fv~s~rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~--~--~~~~~~HnH~p 73 (87)
T 2rpr_A 11 LEFLRTSLGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H--R--IMVMRSHCHQP 73 (87)
T ss_dssp CEEEEETTTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T--E--EEECSCCSSCC
T ss_pred eEEEEcCCCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C--C--EECCCCcCCCC
Confidence 3455544455557789998775321 12368999995 58999966532 2 1 23568899953
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=82.20 E-value=0.98 Score=36.67 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=31.5
Q ss_pred CCCccccccccccccCCCCCCCceeeeeeC---CeeeeeeEecCCCCcEEEEEeecCCCCCCC
Q 036653 173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTYS---DCCAKKIECSDHSGHVIEIVNKGMHSHDPP 232 (487)
Q Consensus 173 ~~DGy~WRKYGQK~vkgs~~pRsYYrCt~~---~C~akK~~~~~~dg~~~~i~Y~G~HnH~~p 232 (487)
.-|||...+--+ ...+.|.+|+.. +|.|+=+... ++ ++..+.|||++.
T Consensus 24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 478998776432 234789999873 7998754332 22 335788999754
No 7
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=25.22 E-value=33 Score=27.55 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=27.8
Q ss_pred CCccccccccccc--------cC--CCCCCCceeeeeeCCeeeeeeEecCCCCcEEEEEeecCCCC
Q 036653 174 SDGYNWRKYGQKQ--------VK--SPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSH 229 (487)
Q Consensus 174 ~DGy~WRKYGQK~--------vk--gs~~pRsYYrCt~~~C~akK~~~~~~dg~~~~i~Y~G~HnH 229 (487)
..++.|-|-|... +. ...-||+||.|.-.+=..++. +.+.|.|+=.+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~~~~~~~~-------s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKE-------STVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC--------C-------EEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCCCCCCccc-------EEEEEEhhhcCCc
Confidence 6779999988752 23 335599999994332111111 2567777766665
No 8
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=23.86 E-value=26 Score=23.03 Aligned_cols=8 Identities=63% Similarity=1.302 Sum_probs=6.7
Q ss_pred ceeeeeeC
Q 036653 195 SYYKCTYS 202 (487)
Q Consensus 195 sYYrCt~~ 202 (487)
.|||||..
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999974
No 9
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=13.89 E-value=77 Score=27.35 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=0.0
Q ss_pred eEEeeecccCCCccccccccccc----------------cCCCCC---CCceeee
Q 036653 164 SVVHIVKTPVSDGYNWRKYGQKQ----------------VKSPKG---SRSYYKC 199 (487)
Q Consensus 164 ~~~~~~~~~~~DGy~WRKYGQK~----------------vkgs~~---pRsYYrC 199 (487)
.+.........+...|-|-|+.. +.++-. ||+||+|
T Consensus 23 ~V~LTCp~~~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C 77 (105)
T 1xiw_A 23 TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77 (105)
T ss_dssp EEEEECSSCTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEE
T ss_pred EEEEECCCCCCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEE
No 10
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=12.67 E-value=1e+02 Score=28.73 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=0.0
Q ss_pred CCcEEEEEeecCCCCCCC
Q 036653 215 SGHVIEIVNKGMHSHDPP 232 (487)
Q Consensus 215 dg~~~~i~Y~G~HnH~~p 232 (487)
+|..+..--+|.|+|+.|
T Consensus 140 ~~~~ifFqaKG~HDHpRP 157 (174)
T 1odh_A 140 DGRFIFFQSKGEHDHPRP 157 (174)
T ss_dssp CSSBEEEEEECCCCSCCC
T ss_pred cCCEEEEecccccCCCCC
Done!