Query 036655
Match_columns 243
No_of_seqs 181 out of 1192
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 2E-22 6.8E-27 146.3 6.4 60 35-94 2-62 (63)
2 1u3e_M HNH homing endonuclease 94.8 0.00028 9.4E-09 58.6 -7.8 56 17-76 91-146 (174)
3 3igm_B PF14_0633 protein; AP2 92.8 0.079 2.7E-06 39.7 3.3 28 32-61 4-32 (77)
4 1z1b_A Integrase; protein-DNA 77.1 2.5 8.5E-05 36.2 4.5 41 38-82 15-55 (356)
5 3jtz_A Integrase; four strande 67.1 14 0.00046 27.4 6.0 43 40-82 29-75 (88)
6 3ju0_A Phage integrase; four s 49.3 33 0.0011 26.3 5.6 43 40-82 29-75 (108)
7 2ftc_I Mitochondrial ribosomal 44.9 29 0.00098 27.3 4.7 36 46-83 79-114 (118)
8 1x60_A Sporulation-specific N- 32.1 40 0.0014 23.3 3.3 23 58-80 46-68 (79)
9 1uta_A FTSN, MSGA, cell divisi 30.2 48 0.0017 23.2 3.5 24 57-80 45-68 (81)
10 3r8s_M 50S ribosomal protein L 26.9 54 0.0019 26.4 3.6 35 46-83 91-125 (136)
11 1e9t_A HITF, intestinal trefoi 22.1 55 0.0019 22.7 2.4 22 220-242 25-48 (59)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.86 E-value=2e-22 Score=146.28 Aligned_cols=60 Identities=58% Similarity=1.060 Sum_probs=56.4
Q ss_pred ceeEEEECCCCcEEEEEeecC-CCeEEeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 036655 35 TYKGVRQRTWGKWVAEIREPN-RGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPEL 94 (243)
Q Consensus 35 gyRGVr~~~~GKW~A~I~~~~-~gK~i~LGtFdT~EEAA~AYD~Aa~kl~G~~A~~NFp~~ 94 (243)
+||||+.+++|||+|+|+++. +|+++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 799998778999999999986 489999999999999999999999999999999999985
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=94.76 E-value=0.00028 Score=58.57 Aligned_cols=56 Identities=7% Similarity=-0.118 Sum_probs=39.6
Q ss_pred CCcccccCCCCCCCCCCCceeEEEECCCCcEEEEEeecCCCeEEeecCCCCHHHHHHHHH
Q 036655 17 SSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYD 76 (243)
Q Consensus 17 str~~N~rN~~~~~~ntSgyRGVr~~~~GKW~A~I~~~~~gK~i~LGtFdT~EEAA~AYD 76 (243)
+|+++|++++....... ..+||..++.++|.+.|.. + +.++||.|+|.+|||++|.
T Consensus 91 ~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 91 VTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp ECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred CCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 56777777765443322 2467722445679999998 6 6788999999999999963
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=92.82 E-value=0.079 Score=39.72 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCCceeEE-EECCCCcEEEEEeecCCCeEEe
Q 036655 32 ALCTYKGV-RQRTWGKWVAEIREPNRGARLW 61 (243)
Q Consensus 32 ntSgyRGV-r~~~~GKW~A~I~~~~~gK~i~ 61 (243)
.+|+|+|| |+++.+.|.|.-.. +|++.+
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e--~g~rrs 32 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYD--GASRRS 32 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEE--TTEEEE
T ss_pred CCCCCCcEEeecCCceEEEEEec--CCeEee
Confidence 46999999 79999999999998 777643
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=77.06 E-value=2.5 Score=36.22 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=31.6
Q ss_pred EEEECCCCcEEEEEeecCCCeEEeecCCCCHHHHHHHHHHHHHHH
Q 036655 38 GVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKL 82 (243)
Q Consensus 38 GVr~~~~GKW~A~I~~~~~gK~i~LGtFdT~EEAA~AYD~Aa~kl 82 (243)
||+.++.|+|+.+... +||++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5766677899988765 889999996 9999987776655544
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=67.11 E-value=14 Score=27.39 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=30.5
Q ss_pred EECCCC--cEEEEEeecCCCeEEeecCCC--CHHHHHHHHHHHHHHH
Q 036655 40 RQRTWG--KWVAEIREPNRGARLWLGTFD--TSHEAAMAYDAAARKL 82 (243)
Q Consensus 40 r~~~~G--KW~A~I~~~~~gK~i~LGtFd--T~EEAA~AYD~Aa~kl 82 (243)
+-.++| .|+-+.+...+.+++-||.|. |++||....+.+...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 344443 499998873334568899996 7889888887776665
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=49.32 E-value=33 Score=26.26 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=29.7
Q ss_pred EECCCC--cEEEEEeecCCCeEEeecCCC--CHHHHHHHHHHHHHHH
Q 036655 40 RQRTWG--KWVAEIREPNRGARLWLGTFD--TSHEAAMAYDAAARKL 82 (243)
Q Consensus 40 r~~~~G--KW~A~I~~~~~gK~i~LGtFd--T~EEAA~AYD~Aa~kl 82 (243)
+-.++| .|+-+.+...+.+++-||.|. |+.+|....+.+...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 444443 499888873334457899996 7888887777766665
No 7
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=44.91 E-value=29 Score=27.28 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=31.3
Q ss_pred cEEEEEeecCCCeEEeecCCCCHHHHHHHHHHHHHHHc
Q 036655 46 KWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLY 83 (243)
Q Consensus 46 KW~A~I~~~~~gK~i~LGtFdT~EEAA~AYD~Aa~kl~ 83 (243)
-|+|+|.. +..-+-++...+++.|.+|...|+.+|=
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 49999998 7777888887899999999999998874
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=32.08 E-value=40 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.6
Q ss_pred eEEeecCCCCHHHHHHHHHHHHH
Q 036655 58 ARLWLGTFDTSHEAAMAYDAAAR 80 (243)
Q Consensus 58 K~i~LGtFdT~EEAA~AYD~Aa~ 80 (243)
-++++|.|.+.++|..+..+...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 46888999999999988766544
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=30.23 E-value=48 Score=23.20 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=19.3
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHH
Q 036655 57 GARLWLGTFDTSHEAAMAYDAAAR 80 (243)
Q Consensus 57 gK~i~LGtFdT~EEAA~AYD~Aa~ 80 (243)
--++.+|.|.+.++|..+.++...
T Consensus 45 ~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 45 WNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SEEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 357889999999999988766554
No 10
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=26.91 E-value=54 Score=26.37 Aligned_cols=35 Identities=29% Similarity=0.224 Sum_probs=29.4
Q ss_pred cEEEEEeecCCCeEEeecCCCCHHHHHHHHHHHHHHHc
Q 036655 46 KWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLY 83 (243)
Q Consensus 46 KW~A~I~~~~~gK~i~LGtFdT~EEAA~AYD~Aa~kl~ 83 (243)
-|+|+|.. +..-+-++. .+++.|.+|...|+.+|=
T Consensus 91 ~wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~~KLP 125 (136)
T 3r8s_M 91 YWVALIQP--GKVLYEMDG-VPEELAREAFKLAAAKLP 125 (136)
T ss_dssp EEEEEECT--TCEEEEEES-SCHHHHHHHHHHHHTTCS
T ss_pred EEEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcCC
Confidence 39999998 777777877 599999999999988763
No 11
>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil domain, spectroscopy, cell motility factor; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
Probab=22.14 E-value=55 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=13.9
Q ss_pred CccccccccccccCCCCCC--CCcC
Q 036655 220 GLLNANFVDASCCGWDMLP--TPWC 242 (243)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~--~~~~ 242 (243)
||=......-+| =||... +|||
T Consensus 25 git~~~C~~rGC-Cw~~~~~~vPwC 48 (59)
T 1e9t_A 25 HVTPKECNNRGC-CFDSRIPGVPWC 48 (59)
T ss_dssp SCCTTTTTTSSS-BCCCSCTTSCSS
T ss_pred CCCHHHHhhCcC-cCCCCCCCCccc
Confidence 454444666664 488754 7999
Done!