BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036656
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 121/256 (47%), Gaps = 37/256 (14%)
Query: 101 LRVLSLKNNSFRNEIPRAIGYLF---------------------------RLRILRLDNN 133
L+VL L N F E+P ++ L L+ L L NN
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 134 TFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGN 193
F G+IP +S+C +L SL L FN L G +P LGSL KLR L + N L GEIP
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 194 LSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFN 253
+ +L+ L N G+IP+ LS + +IS N+L+GEIP I L L+ N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 254 QLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISN-----ASNLMR----LGIPMNGF 304
G++P++LG +L L+L N F G IPA++ A+N + + I +G
Sbjct: 525 SFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 305 RGKVPSFGNLHKLQRV 320
+ + GNL + Q +
Sbjct: 584 KKECHGAGNLLEFQGI 599
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 131/275 (47%), Gaps = 12/275 (4%)
Query: 96 GNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIP-DNISHCIKLESLRL 154
G L L L N F +P G L L L +N F G++P D + L+ L L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 155 GFNELEGKVPGKLGSL-PKLRILVIHSNNLSGEI-PSSFGN-LSSLQVLSASANQFVGQI 211
FNE G++P L +L L L + SNN SG I P+ N ++LQ L N F G+I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 212 PATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLE 271
P TLS + + N LSG IP S+ +LS L D N L G +P +L + + LE
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLE 469
Query: 272 VLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSF-GNLHKLQRVIISMNHLGNG 330
L L N TG IP+ +SN +NL + + N G++P + G L L + +S N
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 331 EKDDLEFVNSLVNASRLELLQININNFGGMLPEAV 365
+L SL+ L +N N F G +P A+
Sbjct: 530 IPAELGDCRSLI------WLDLNTNLFNGTIPAAM 558
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 125/280 (44%), Gaps = 48/280 (17%)
Query: 95 IGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154
+G+LS LR L L N EIP+ + Y+ L L LD N G+IP +S+C L + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPAT 214
N L G++P +G L L IL + +N+ SG IP+ G+ SL L + N F G IPA
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 215 LSEL-----------KRMRYISFGG----------------------NKLSGEIPFSIY- 240
+ + KR YI G N+LS P +I
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 241 ------------NLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASI 288
N ++ +N L G +P ++G ++P L +LNLG N +G IP +
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEV 676
Query: 289 SNASNLMRLGIPMNGFRGKVP-SFGNLHKLQRVIISMNHL 327
+ L L + N G++P + L L + +S N+L
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 13/280 (4%)
Query: 93 PHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESL 152
P +G+ S L+ L + N + RAI L++L + +N F G IP L+ L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 153 RLGFNELEGKVPGKL-GSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQI 211
L N+ G++P L G+ L L + N+ G +P FG+ S L+ L+ S+N F G++
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 212 PA-TLSELKRMRYISFGGNKLSGEIPFSIYNLS-TLSDFHFPFNQLRGSLPSDLGFTLPN 269
P TL +++ ++ + N+ SGE+P S+ NLS +L N G + +L N
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 270 -LEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVP-SFGNLHKLQRVIISMNHL 327
L+ L L N FTG IP ++SN S L+ L + N G +P S G+L KL+ + + +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 328 GNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVGN 367
+L +V + LE L ++ N+ G +P + N
Sbjct: 455 EGEIPQELMYVKT------LETLILDFNDLTGEIPSGLSN 488
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 133/317 (41%), Gaps = 52/317 (16%)
Query: 93 PHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESL 152
P + N S L L L N IP ++G L +LR L+L N G+IP + + LE+L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 153 RLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP 212
L FN+L G++P L + L + + +N L+GEIP G L +L +L S N F G IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 213 ATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHF---------------------- 250
A L + + + ++ N +G IP +++ S +F
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 251 -----------PFNQLRGSLPSDL------GFTLPNLE------VLNLGANQFTGPIPAS 287
N+L P ++ G T P + L++ N +G IP
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 288 ISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASR 346
I + L L + N G +P G+L L + +S N L D ++ +
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL------DGRIPQAMSALTM 705
Query: 347 LELLQININNFGGMLPE 363
L + ++ NN G +PE
Sbjct: 706 LTEIDLSNNNLSGPIPE 722
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 138/300 (46%), Gaps = 41/300 (13%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLF-----RLRILRLDNNTFGGQIPDNISHCIKLESL 152
L+ L VL L NS +G++ L+ L + N G + ++S C+ LE L
Sbjct: 150 LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFL 205
Query: 153 RLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP 212
+ N +P LG L+ L I N LSG+ + + L++L+ S+NQFVG IP
Sbjct: 206 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 213 ATLSELKRMRYISFGGNKLSGEIP-FSIYNLSTLSDF-----HF-----PF--------- 252
LK ++Y+S NK +GEIP F TL+ HF PF
Sbjct: 265 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 253 -----NQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISN-ASNLMRLGIPMNGFRG 306
N G LP D + L+VL+L N+F+G +P S++N +++L+ L + N F G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 307 KVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVG 366
P NL + + + +L N + +L N S L L ++ N G +P ++G
Sbjct: 383 --PILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 155/351 (44%), Gaps = 49/351 (13%)
Query: 52 VLSSWNYSRHFCQWKGVTCSPRHQRVTAXXXXXX-------------------XXXXXXX 92
+L W+ +++ C + GVTC R +VT+
Sbjct: 29 LLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN 86
Query: 93 PHI-GNLSFLRV------LSLKNNSFRNEIP--RAIGYLFRLRILRLDNNTFGGQIPDNI 143
HI G++S + L L NS + ++G L+ L + +NT P +
Sbjct: 87 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKV 144
Query: 144 SHCIKLESLR---LGFNELEGK-VPGKLGS--LPKLRILVIHSNNLSGEIPSSFGNLSSL 197
S +KL SL L N + G V G + S +L+ L I N +SG++ S +L
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNL 202
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257
+ L S+N F IP L + ++++ GNKLSG+ +I + L + NQ G
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 258 SLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASN-LMRLGIPMNGFRGKVPSFGNLHK 316
+P L +L+ L+L N+FTG IP +S A + L L + N F G VP F
Sbjct: 262 PIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 317 LQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVGN 367
L + ++ +GE +++L+ L++L ++ N F G LPE++ N
Sbjct: 319 LLESLALSSNNFSGELP----MDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 40/188 (21%)
Query: 102 RVLSLKNNSFRNEIPRAIGYLFRLRILR--------------LDNNTFGGQIPDNISHCI 147
R + +KN+ + E A G L + +R + + +GG +
Sbjct: 574 RYVYIKNDGMKKECHGA-GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
+ L + +N L G +P ++GS+P L IL + N++SG IP G+L L +L S+N
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-- 690
Query: 208 VGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGF-T 266
KL G IP ++ L+ L++ N L G +P F T
Sbjct: 691 ----------------------KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
Query: 267 LPNLEVLN 274
P + LN
Sbjct: 729 FPPAKFLN 736
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 121/256 (47%), Gaps = 37/256 (14%)
Query: 101 LRVLSLKNNSFRNEIPRAIGYLF---------------------------RLRILRLDNN 133
L+VL L N F E+P ++ L L+ L L NN
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 134 TFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGN 193
F G+IP +S+C +L SL L FN L G +P LGSL KLR L + N L GEIP
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 194 LSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFN 253
+ +L+ L N G+IP+ LS + +IS N+L+GEIP I L L+ N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 254 QLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISN-----ASNLMR----LGIPMNGF 304
G++P++LG +L L+L N F G IPA++ A+N + + I +G
Sbjct: 522 SFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Query: 305 RGKVPSFGNLHKLQRV 320
+ + GNL + Q +
Sbjct: 581 KKECHGAGNLLEFQGI 596
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 131/275 (47%), Gaps = 12/275 (4%)
Query: 96 GNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIP-DNISHCIKLESLRL 154
G L L L N F +P G L L L +N F G++P D + L+ L L
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 155 GFNELEGKVPGKLGSL-PKLRILVIHSNNLSGEI-PSSFGN-LSSLQVLSASANQFVGQI 211
FNE G++P L +L L L + SNN SG I P+ N ++LQ L N F G+I
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 212 PATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLE 271
P TLS + + N LSG IP S+ +LS L D N L G +P +L + + LE
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLE 466
Query: 272 VLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSF-GNLHKLQRVIISMNHLGNG 330
L L N TG IP+ +SN +NL + + N G++P + G L L + +S N
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 331 EKDDLEFVNSLVNASRLELLQININNFGGMLPEAV 365
+L SL+ L +N N F G +P A+
Sbjct: 527 IPAELGDCRSLI------WLDLNTNLFNGTIPAAM 555
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 125/280 (44%), Gaps = 48/280 (17%)
Query: 95 IGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154
+G+LS LR L L N EIP+ + Y+ L L LD N G+IP +S+C L + L
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPAT 214
N L G++P +G L L IL + +N+ SG IP+ G+ SL L + N F G IPA
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 215 LSEL-----------KRMRYISFGG----------------------NKLSGEIPFSI-- 239
+ + KR YI G N+LS P +I
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 240 --YNLSTLSDFH---------FPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASI 288
Y T F +N L G +P ++G ++P L +LNLG N +G IP +
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEV 673
Query: 289 SNASNLMRLGIPMNGFRGKVP-SFGNLHKLQRVIISMNHL 327
+ L L + N G++P + L L + +S N+L
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 13/280 (4%)
Query: 93 PHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESL 152
P +G+ S L+ L + N + RAI L++L + +N F G IP L+ L
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 153 RLGFNELEGKVPGKL-GSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQI 211
L N+ G++P L G+ L L + N+ G +P FG+ S L+ L+ S+N F G++
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 212 PA-TLSELKRMRYISFGGNKLSGEIPFSIYNLS-TLSDFHFPFNQLRGSLPSDLGFTLPN 269
P TL +++ ++ + N+ SGE+P S+ NLS +L N G + +L N
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 270 -LEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVP-SFGNLHKLQRVIISMNHL 327
L+ L L N FTG IP ++SN S L+ L + N G +P S G+L KL+ + + +N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 328 GNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVGN 367
+L +V + LE L ++ N+ G +P + N
Sbjct: 452 EGEIPQELMYVKT------LETLILDFNDLTGEIPSGLSN 485
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 133/317 (41%), Gaps = 52/317 (16%)
Query: 93 PHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESL 152
P + N S L L L N IP ++G L +LR L+L N G+IP + + LE+L
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 153 RLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP 212
L FN+L G++P L + L + + +N L+GEIP G L +L +L S N F G IP
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 213 ATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHF---------------------- 250
A L + + + ++ N +G IP +++ S +F
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 251 -----------PFNQLRGSLPSDL------GFTLPNLE------VLNLGANQFTGPIPAS 287
N+L P ++ G T P + L++ N +G IP
Sbjct: 589 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 288 ISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASR 346
I + L L + N G +P G+L L + +S N L D ++ +
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL------DGRIPQAMSALTM 702
Query: 347 LELLQININNFGGMLPE 363
L + ++ NN G +PE
Sbjct: 703 LTEIDLSNNNLSGPIPE 719
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 138/300 (46%), Gaps = 41/300 (13%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLF-----RLRILRLDNNTFGGQIPDNISHCIKLESL 152
L+ L VL L NS +G++ L+ L + N G + ++S C+ LE L
Sbjct: 147 LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFL 202
Query: 153 RLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP 212
+ N +P LG L+ L I N LSG+ + + L++L+ S+NQFVG IP
Sbjct: 203 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 213 ATLSELKRMRYISFGGNKLSGEIP-FSIYNLSTLSDF-----HF-----PF--------- 252
LK ++Y+S NK +GEIP F TL+ HF PF
Sbjct: 262 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 253 -----NQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISN-ASNLMRLGIPMNGFRG 306
N G LP D + L+VL+L N+F+G +P S++N +++L+ L + N F G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 307 KVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVG 366
P NL + + + +L N + +L N S L L ++ N G +P ++G
Sbjct: 380 --PILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 155/351 (44%), Gaps = 49/351 (13%)
Query: 52 VLSSWNYSRHFCQWKGVTCSPRHQRVTAXXXXXX-------------------XXXXXXX 92
+L W+ +++ C + GVTC R +VT+
Sbjct: 26 LLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN 83
Query: 93 PHI-GNLSFLRV------LSLKNNSFRNEIP--RAIGYLFRLRILRLDNNTFGGQIPDNI 143
HI G++S + L L NS + ++G L+ L + +NT P +
Sbjct: 84 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKV 141
Query: 144 SHCIKLESLR---LGFNELEGK-VPGKLGS--LPKLRILVIHSNNLSGEIPSSFGNLSSL 197
S +KL SL L N + G V G + S +L+ L I N +SG++ S +L
Sbjct: 142 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNL 199
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257
+ L S+N F IP L + ++++ GNKLSG+ +I + L + NQ G
Sbjct: 200 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 258 SLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASN-LMRLGIPMNGFRGKVPSFGNLHK 316
+P L +L+ L+L N+FTG IP +S A + L L + N F G VP F
Sbjct: 259 PIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 317 LQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVGN 367
L + ++ +GE +++L+ L++L ++ N F G LPE++ N
Sbjct: 316 LLESLALSSNNFSGELP----MDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 40/188 (21%)
Query: 102 RVLSLKNNSFRNEIPRAIGYLFRLRILR--------------LDNNTFGGQIPDNISHCI 147
R + +KN+ + E A G L + +R + + +GG +
Sbjct: 571 RYVYIKNDGMKKECHGA-GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
+ L + +N L G +P ++GS+P L IL + N++SG IP G+L L +L S+N
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-- 687
Query: 208 VGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGF-T 266
KL G IP ++ L+ L++ N L G +P F T
Sbjct: 688 ----------------------KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 725
Query: 267 LPNLEVLN 274
P + LN
Sbjct: 726 FPPAKFLN 733
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 127/298 (42%), Gaps = 15/298 (5%)
Query: 30 SNETDQLALLEFKAKITYDPLEVLSSWNYSRHFC--QWKGVTCSPRHQRVTAXXXXXXXX 87
N D+ ALL+ K + +P LSSW + C W GV C Q
Sbjct: 3 CNPQDKQALLQIKKDLG-NP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 88 XXXXXPH-----IGNLSFLRVLSLKN-NSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPD 141
P+ + NL +L L + N+ IP AI L +L L + + G IPD
Sbjct: 61 NLPK-PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
Query: 142 NISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL-QVL 200
+S L +L +N L G +P + SLP L + N +SG IP S+G+ S L +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 201 SASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLP 260
+ S N+ G+IP T + L + ++ N L G+ + H N L L
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL- 237
Query: 261 SDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQ 318
+G + NL L+L N+ G +P ++ L L + N G++P GNL +
Sbjct: 238 GKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157
L+ L L+L N + L L L L NN H +L+ L LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSE 217
+L+ G L KL+ L +++N L +F L++LQ LS S NQ
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 218 LKRMRYISFGGNKLSGEIPFSIY 240
L +++ I+ GN+ ++Y
Sbjct: 178 LGKLQTITLFGNQFDCSRCETLY 200
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 176 LVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEI 235
L + S L+ ++F L+ L L+ NQ +L + + N+L+ +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98
Query: 236 PFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNL 294
P +++ L+ L + NQL+ SLPS + L L+ L L NQ + +NL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 295 MRLGIPMNGFRGKVP--SFGNLHKLQRVIISMNH 326
L + N + VP +F L KLQ + + N
Sbjct: 158 QTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQ 190
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 170 LPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGN 229
L KL L + N L F +L+ L L + NQ L ++ + GGN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 230 KLSGEIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQF 280
+L +P +++ L+ L + NQL+ S+P+ L NL+ L+L NQ
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%)
Query: 97 NLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGF 156
+L+ L L L NN + +L +L L L N KL+ LRL
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 157 NELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
N+L+ G L L+ L + +N L +F L LQ ++ NQF
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 147 IKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQ 206
KL L L +N+L+ G L +L L + +N L+ F +L+ L L NQ
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 207 FVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGF 265
L +++ + N+L IP ++ L+ L NQL+ S+P
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFD 176
Query: 266 TLPNLEVLNLGANQF 280
L L+ + L NQF
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157
L+ L L+L N + L L L L NN H +L+ L LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSE 217
+L+ G L KL+ L +++N L +F L++LQ LS S NQ
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 218 LKRMRYISFGGNK 230
L +++ I+ GN+
Sbjct: 178 LGKLQTITLFGNQ 190
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 176 LVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEI 235
L + S L+ ++F L+ L L+ NQ +L + + N+L+ +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98
Query: 236 PFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNL 294
P +++ L+ L + NQL+ SLPS + L L+ L L NQ + +NL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 295 MRLGIPMNGFRGKVP--SFGNLHKLQRVIISMNH 326
L + N + VP +F L KLQ + + N
Sbjct: 158 QTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQ 190
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 170 LPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGN 229
L KL L + N L F +L+ L L + NQ L ++ + GGN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 230 KLSGEIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQF 280
+L +P +++ L+ L + NQL+ S+P+ L NL+ L+L NQ
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%)
Query: 97 NLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGF 156
+L+ L L L NN + +L +L L L N KL+ LRL
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 157 NELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
N+L+ G L L+ L + +N L +F L LQ ++ NQF
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
KL L L +N+L+ G L +L L + +N L+ F +L+ L L NQ
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 208 VGQIPATLSELKRMRYISFGGNKLSGEIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFT 266
L +++ + N+L IP ++ L+ L NQL+ S+P
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDR 177
Query: 267 LPNLEVLNLGANQF 280
L L+ + L NQF
Sbjct: 178 LGKLQTITLFGNQF 191
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 18/232 (7%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157
L+ L ++ NN + P + L +L + ++NN P +++ L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSE 217
++ P L +L L L + SN +S S+ L+SLQ LS S+NQ P L+
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 218 LKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGA 277
L + + NK+S +I + L+ L NQ+ P LG L NL+ L+L
Sbjct: 172 LTTLERLDISSNKVS-DISV-LAKLTNLESLIATNNQISDITP--LGI-LTNLDELSLNG 226
Query: 278 NQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGN 329
NQ ++++ +NL L + N P G L KL + + N + N
Sbjct: 227 NQLKD--IGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISN 275
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 95 IGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154
+ +L+ L L L NN N P + L +L L+L N P ++ L +L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
Query: 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIP--------------------SSFGNL 194
N+LE P + +L L L ++ NN+S P SS NL
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANL 348
Query: 195 SSLQVLSASANQFVGQIPATLSELKRMRYI 224
+++ LSA NQ P L+ L R+ +
Sbjct: 349 TNINWLSAGHNQISDLTP--LANLTRITQL 376
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%)
Query: 122 LFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSN 181
L L LRLD N P KL L LG+NEL+ G L L+ L +++N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 182 NLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGN 229
L +F L+ L+ L NQ L++++ + N
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
KL L L N+L+ G L L L + N L F L +L L NQ
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 208 VGQIPATLSELKRMRYISFGGNKLSGEIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFT 266
P L ++ Y+S G N+L +P +++ L++L + NQL+ +P
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDK 179
Query: 267 LPNLEVLNLGANQF 280
L L+ L L NQ
Sbjct: 180 LTELKTLKLDNNQL 193
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 139 IPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQ 198
IP NI K L L N+L L KLR+L ++ N L F L +L+
Sbjct: 31 IPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 199 VLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGS 258
L + N+ +L + + N+L P +L+ L+ +N+L+ S
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-S 147
Query: 259 LPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVP--SFGNLHK 316
LP + L +L+ L L NQ + + L L + N + +VP +F +L K
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206
Query: 317 LQRVIISMN 325
L+ + + N
Sbjct: 207 LKMLQLQEN 215
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 18/232 (7%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157
L+ L ++ NN + P + L +L + ++NN P +++ L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSE 217
++ P L +L L L + SN +S S+ L+SLQ LS S+NQ P L+
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 218 LKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGA 277
L + + NK+S +I + L+ L NQ+ P LG L NL+ L+L
Sbjct: 172 LTTLERLDISSNKVS-DISV-LAKLTNLESLIATNNQISDITP--LGI-LTNLDELSLNG 226
Query: 278 NQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGN 329
NQ ++++ +NL L + N P G L KL + + N + N
Sbjct: 227 NQLKD--IGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISN 275
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157
L+ L L L N N P A L L L L+ N P IS+ L L L FN
Sbjct: 260 LTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSE 217
+ P + SL KL+ L ++N +S SS NL+++ LSA NQ P L+
Sbjct: 316 NISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 369
Query: 218 LKRMRYI 224
L R+ +
Sbjct: 370 LTRITQL 376
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 152 LRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQI 211
L L N++ PG SL L+ L + SN L F +L+ L VL NQ
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 212 PATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLP 260
A L ++ + NKL+ E+P I L+ L+ NQL+ S+P
Sbjct: 105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 209 GQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLP 268
+PA + ++ Y+ N+++ P +L L + + NQL G+LP + +L
Sbjct: 32 ASVPAGIPTNAQILYLH--DNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 269 NLEVLNLGANQFT 281
L VL+LG NQ T
Sbjct: 89 QLTVLDLGTNQLT 101
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 174 RILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPA-TLSELKRMRYISFGGNKLS 232
+IL +H N ++ P F +L +L+ L +NQ G +P L ++ + G N+L+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 233 GEIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQF 280
+P ++++ L L + N+L LP + L +L L L NQ
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQL 147
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 104 LSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKV 163
L L N F +P+ + L ++ L NN + S+ +L +L L +N L
Sbjct: 36 LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 164 PGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPAT-LSELKRMR 222
P L LR+L +H N++S +F +LS+L L+ AN LS+ +
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSE 154
Query: 223 YISFGGNKLSG 233
Y G + +G
Sbjct: 155 YKEPGIARCAG 165
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 163 VPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMR 222
VP +L + L ++ + +N +S SF N++ L L S N+ P T LK +R
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 223 YISFGGNKLSGEIPFSIYN-LSTLSDFHFPFNQL 255
+S GN +S +P +N LS LS N L
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 128 LRLDNNTFGGQIPDNISHCIKLESLRLGFNELE--GKVPGKLGSLPKLRILVIHSNNLS- 184
L NN + +N H +LE+L L N+L+ K+ + L+ L I N++S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 185 GEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLST 244
E SL L+ S+N I L R++ + NK+ IP + L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKS-IPKQVVKLEA 445
Query: 245 LSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIP 285
L + + NQL+ S+P + L +L+ + L N + P
Sbjct: 446 LQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 101/256 (39%), Gaps = 49/256 (19%)
Query: 102 RVLSLKNNSFRNEIPRAIGYLFR---------LRILRLDNNTFGGQIPDNISHCIKLESL 152
++++ KN++ R ++P A+ FR L+I +D F +H I + L
Sbjct: 48 KIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFA------YAHTI--QKL 98
Query: 153 RLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP 212
+GFN + P ++P L +LV+ N+LS F N L LS S N
Sbjct: 99 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158
Query: 213 ATLSELKRMRYISFGGNKLSGEIPFSI----------YNL----------STLSDFHFPF 252
T ++ + N+L+ + S+ YNL L H
Sbjct: 159 DTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217
Query: 253 NQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-F 311
N +RG P ++ T +L L N T A + N L+ + + N + F
Sbjct: 218 NVVRG--PVNVELT-----ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 312 GNLHKLQRVIISMNHL 327
+ +L+R+ IS N L
Sbjct: 269 VKMQRLERLYISNNRL 284
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 101/256 (39%), Gaps = 49/256 (19%)
Query: 102 RVLSLKNNSFRNEIPRAIGYLFR---------LRILRLDNNTFGGQIPDNISHCIKLESL 152
++++ KN++ R ++P A+ FR L+I +D F +H I + L
Sbjct: 54 KIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFA------YAHTI--QKL 104
Query: 153 RLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP 212
+GFN + P ++P L +LV+ N+LS F N L LS S N
Sbjct: 105 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164
Query: 213 ATLSELKRMRYISFGGNKLSGEIPFSI----------YNL----------STLSDFHFPF 252
T ++ + N+L+ + S+ YNL L H
Sbjct: 165 DTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223
Query: 253 NQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-F 311
N +RG P ++ T +L L N T A + N L+ + + N + F
Sbjct: 224 NVVRG--PVNVELT-----ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274
Query: 312 GNLHKLQRVIISMNHL 327
+ +L+R+ IS N L
Sbjct: 275 VKMQRLERLYISNNRL 290
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 32/198 (16%)
Query: 169 SLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQI-PATLSELKRMRYISFG 227
S L IL +HSN L+G ++F L+ L+ L S N + + P T L + +
Sbjct: 53 SCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLD 112
Query: 228 GNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPAS 287
L P L+ L + N L+ +LP + L NL L L N+ IP+
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHGNR----IPS- 166
Query: 288 ISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRL 347
+P + FRG LH L R+++ NH+ ++ + RL
Sbjct: 167 -----------VPEHAFRG-------LHSLDRLLLHQNHVARVHP------HAFRDLGRL 202
Query: 348 ELLQININNFGGMLPEAV 365
L + NN MLP V
Sbjct: 203 MTLYLFANNL-SMLPAEV 219
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 124 RLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNL 183
+LR++ D TF G + H L R G EL PG L L+ L + NNL
Sbjct: 91 QLRVV--DPTTFRG-----LGHLHTLHLDRCGLQELG---PGLFRGLAALQYLYLQDNNL 140
Query: 184 SGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLS 243
++F +L +L L N+ L + + N ++ P + +L
Sbjct: 141 QALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 244 TLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFT 281
L + N L LP+++ L +L+ L L N +
Sbjct: 201 RLMTLYLFANNL-SMLPAEVLVPLRSLQYLRLNDNPWV 237
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 149 LESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFV 208
LES+ G N+L G G +PKL+ L + SN L F L+SLQ + N +
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 231
Query: 209 GQIPATLSELKRMRYISFGGNK 230
P R+ Y+S NK
Sbjct: 232 CSCP-------RIDYLSRWLNK 246
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 176 LVIHSNNLSGEIPSS-FGNLSSLQVLSASANQFVGQIPATL-SELKRMRYISFGGNKLSG 233
L+ S+NL I L L+ + + IPA L ++++ + ++ N
Sbjct: 103 LIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLT-HIPANLLTDMRNLSHLELRAN--IE 159
Query: 234 EIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNAS 292
E+P +++ L L F N+LR +P + +P L+ LNL +NQ +
Sbjct: 160 EMPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLT 218
Query: 293 NLMRLGIPMNGFRGKVPSFGNLHK 316
+L ++ + N + P L +
Sbjct: 219 SLQKIWLHTNPWDCSCPRIDYLSR 242
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 213 ATLSELKRMRYISFGGNKLSGEIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNLE 271
+ L EL + Y+ GN+L +P +++ L+ L + NQL+ SLP + L NL
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLT 136
Query: 272 VLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS--FGNLHKLQRVIISMNHL 327
LNL NQ +NL L + N + +P F L +L+ + + N L
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL 193
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 11/173 (6%)
Query: 117 RAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLR---LGFNELEGKVPGKLGSLPKL 173
+ I YL +R L L GG +IS +L +L L N+L+ G L L
Sbjct: 57 QGIQYLPNVRYLAL-----GGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111
Query: 174 RILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG 233
+ LV+ N L F L++L L+ + NQ +L + + N+L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Query: 234 EIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIP 285
+P +++ L+ L D NQL+ S+P + L +L+ + L N + P
Sbjct: 172 -LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 27/123 (21%)
Query: 95 IGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154
I FL L L NS E+P I L LR+L L +N +L SL
Sbjct: 243 IFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHN--------------RLTSL-- 285
Query: 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPAT 214
P +LGS +L+ +N+ +P FGNL +LQ L N Q
Sbjct: 286 ---------PAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335
Query: 215 LSE 217
L+E
Sbjct: 336 LTE 338
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 141 DNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVL 200
D + H + L +L++ FN + + L L ++ N+L+ E+P+ NLS+L+VL
Sbjct: 223 DQLWHALDLSNLQI-FN-----ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVL 275
Query: 201 SASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTL 245
S N+ +PA L +++Y F N ++ +P+ NL L
Sbjct: 276 DLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNL 318
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Query: 96 GNLSFLRVLSLKNNSFRN--EIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLES-- 151
L L+ L L+ N +N ++ + L L + N+ D C ES
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT--CAWAESIL 431
Query: 152 -LRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQ 210
L L N L G V L PK+++L +H+N + IP +L +LQ L+ ++NQ
Sbjct: 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSV 488
Query: 211 IPATLSELKRMRYISFGGNKLSGEIP 236
L ++YI N P
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 102 RVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEG 161
+ LSL NS I +L LR+LRL +N LE L + N L+
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
Query: 162 KVPGKLGSLPKLRILVIHSNNLSG-EIPSSFGNLSSLQVLSASANQF-------VGQIPA 213
+ S LR L + N+ + FGNL+ L L SA +F V +
Sbjct: 115 ISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 214 TLSELKRMRYISFGGNKLSGEIP 236
+ L + Y GG S +IP
Sbjct: 172 SCILLDLVSYHIKGGETESLQIP 194
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 43/206 (20%)
Query: 102 RVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEG 161
++ +K+ F+N L L L L NN P + +KLE L L N+L+
Sbjct: 63 KITEIKDGDFKN--------LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 162 KVPGKLGSLPK-LRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF--VGQIPATLSEL 218
++P K+ PK L+ L +H N ++ S F L+ + V+ N G +
Sbjct: 114 ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 219 KRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGAN 278
K++ YI N++T+ LP P+L L+L N
Sbjct: 171 KKLSYIRIADT-----------NITTIPQ----------GLP-------PSLTELHLDGN 202
Query: 279 QFTGPIPASISNASNLMRLGIPMNGF 304
+ T AS+ +NL +LG+ N
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSI 228
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 43/206 (20%)
Query: 102 RVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEG 161
++ +K+ F+N L L L L NN P + +KLE L L N+L+
Sbjct: 63 KITEIKDGDFKN--------LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 162 KVPGKLGSLPK-LRILVIHSNNLSGEIPSSFGNLSSLQVLSASAN--QFVGQIPATLSEL 218
++P K+ PK L+ L +H N ++ S F L+ + V+ N + G +
Sbjct: 114 ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 219 KRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGAN 278
K++ YI N++T+ LP P+L L+L N
Sbjct: 171 KKLSYIRIADT-----------NITTIPQ----------GLP-------PSLTELHLDGN 202
Query: 279 QFTGPIPASISNASNLMRLGIPMNGF 304
+ T AS+ +NL +LG+ N
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSI 228
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157
L++LR+ K ++P L L LD+N +++ KL L LG N
Sbjct: 174 LNYLRISEAKLTGIPKDLPET------LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227
Query: 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASAN 205
++ G L LP LR L + +N LS +P+ +L LQV+ N
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 191 FGNLSSLQVLSASANQFVGQ-IPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFH 249
F LSSL+VL + N F +P +EL+ + ++ +L P + +LS+L +
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 250 FPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIP 285
NQL+ S+P + L +L+ + L N + P
Sbjct: 501 MASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 125 LRILRLDNNTFGGQ-IPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNL 183
L +L++ N+F +PD + L L L +LE P SL L++L + SN L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 184 SGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNK 230
F L+SLQ + N + P R+ Y+S NK
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYLSRWLNK 546
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
+IPDN+ K +L L FN L S P+L++L + + ++ +LS L
Sbjct: 21 KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257
L + N S L ++ + L+ F I +L TL + + N ++
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 258 SLPSDLGFTLPNLEVLNLGANQ 279
+ L NLE L+L +N+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNK 160
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 120 GYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIH 179
G L L L L N G P+ ++ L+LG N+++ L +L+ L ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 180 SNNLSGEIPSSFGNLSSLQVLSASANQF 207
N +S +P SF +L+SL L+ ++N F
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 203 SANQFVGQIPATLS-ELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPS 261
S++ G++P + ELKR N+L+G P + S + + N+++ + +
Sbjct: 45 SSDGLFGRLPHLVKLELKR--------NQLTGIEPNAFEGASHIQELQLGENKIK-EISN 95
Query: 262 DLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGF 304
+ L L+ LNL NQ + +P S + ++L L + N F
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 176 LVIHSNNLSGEIPSS--FGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNK--- 230
L+++ N L G I S FG L L L NQ G P ++ + G NK
Sbjct: 34 LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 231 LSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQF 280
+S ++ ++ L TL+ + NQ+ +P L +L LNL +N F
Sbjct: 93 ISNKMFLGLHQLKTLNLYD---NQISCVMPGSFEH-LNSLTSLNLASNPF 138
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 257 GSLPSDLGF-TLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRG-KVPSFGNL 314
G + SD F LP+L L L NQ TG P + AS++ L + N + F L
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 315 HKLQRVIISMNHLGNGEKDDLEFVNSLV 342
H+L+ + + N + E +NSL
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLT 129
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 43/106 (40%)
Query: 126 RILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSG 185
R+L L N D + LE L L N + PG +L LR L + SN L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 186 EIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKL 231
F LS+L L S N+ V + +L ++ + G N L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 28/185 (15%)
Query: 94 HIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLR 153
H+ L LR+ L N+ R+ + L+RL++L + + + + N + + L SL
Sbjct: 174 HLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
Query: 154 LGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPA 213
+ L ++P L + +L L+ L+ S N +
Sbjct: 231 ITH--------CNLTAVPYLAV----------------RHLVYLRFLNLSYNPISTIEGS 266
Query: 214 TLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVL 273
L EL R++ I G +L+ P++ L+ L + NQL +L + ++ NLE L
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETL 325
Query: 274 NLGAN 278
L +N
Sbjct: 326 ILDSN 330
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 32/193 (16%)
Query: 104 LSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKV 163
L++ +FRN L LRIL L ++ PD L LRL F L V
Sbjct: 62 LTIDKEAFRN--------LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
Query: 164 --PGKLGSLPKLRILVIHSNNL-SGEIPSSFGNLSSLQVLSASANQFVGQIPATLSEL-- 218
G +L L L + N + S + SFG L+SL+ + S+NQ L L
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173
Query: 219 KRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGAN 278
K + + S N L + D+ N R + LE+L++ N
Sbjct: 174 KTLSFFSLAANSLYSRVSV---------DWGKCMNPFRNMV----------LEILDVSGN 214
Query: 279 QFTGPIPASISNA 291
+T I + SNA
Sbjct: 215 GWTVDITGNFSNA 227
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 44/197 (22%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
KL L +N+LEGK+P GS KL L + N ++ EIP++F +
Sbjct: 331 KLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFT------------ 376
Query: 208 VGQIPATLSELKRMRYISFGGNKLSGEIP--FSIYNLSTLSDFHFPFNQLRGSL------ 259
+++ +SF NKL IP F ++S S F +N++ GS+
Sbjct: 377 -----------EQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFD 423
Query: 260 PSD-LGFTLPNLEVLNLGANQ--------FTGPIPASISNASNLMRLGIPMNGFRGKVPS 310
P D F N+ +NL NQ F+ P S N IP N + + +
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENEN 483
Query: 311 FGNLHKLQRVIISMNHL 327
F N + L + + N L
Sbjct: 484 FKNTYLLTSIDLRFNKL 500
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 270 LEVLNLGANQF-TGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHL 327
++++ +G N T P+ S+ L L N GK+P+FG+ KL + ++ N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 213 ATLSELKRMRYISFGGNKLSGEIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNLE 271
+ L EL + Y+ GN+L +P +++ L+ L + NQL+ SLP + L NL
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLT 136
Query: 272 VLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS--FGNLHKLQRVIISMNHL 327
L L NQ +NL RL + N + +P F L +L+++ ++ N L
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQL 193
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 149 LESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFV 208
L+ L L N+L+ G L L L ++ N L F L++L L NQ
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ 170
Query: 209 GQIPATLSELKRMRYISFGGNKLSGEIPFSIYN 241
+L +++ +S N+L +P +++
Sbjct: 171 SLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFD 202
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 11/149 (7%)
Query: 117 RAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLR---LGFNELEGKVPGKLGSLPKL 173
+ I YL +R L L GG +IS +L +L L N+L+ G L L
Sbjct: 57 QGIQYLPNVRYLAL-----GGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111
Query: 174 RILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG 233
+ LV+ N L F L++L L NQ +L + + N+L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Query: 234 EIPFSIYN-LSTLSDFHFPFNQLRGSLPS 261
+P +++ L+ L NQL+ S+P
Sbjct: 172 -LPEGVFDKLTQLKQLSLNDNQLK-SVPD 198
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 3/155 (1%)
Query: 174 RILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG 233
R+L +H N + +SF +L L++L S N + L + + N+L+
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 234 EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPI-PASISNAS 292
+ LS L + N + S+PS +P+L L+LG + I + S
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 293 NLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHL 327
NL L + M R ++P+ L KL + +S NHL
Sbjct: 186 NLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHL 219
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 77/199 (38%), Gaps = 28/199 (14%)
Query: 113 NEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPK 172
+E+P+ I R L L N D H LE L+LG N + G L
Sbjct: 67 SEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124
Query: 173 LRILVIHSNNLSGEIPS-SFGNLSSLQVL-----------SASANQFVGQIPATLSELKR 220
L L + N L+ IPS +F LS L+ L S + N+ + L ELK+
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183
Query: 221 MRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQF 280
+ YIS G + ++NL L+ + P L LE L + N F
Sbjct: 184 LEYISEGAFE-------GLFNLKYLNLGMCNIKDMPNLTP------LVGLEELEMSGNHF 230
Query: 281 TGPIPASISNASNLMRLGI 299
P S S+L +L +
Sbjct: 231 PEIRPGSFHGLSSLKKLWV 249
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 126 RILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSG 185
++L +TF G N++ L L +N L G LP LR L + NN+
Sbjct: 233 QLLATSESTFSGLKWTNLTQ------LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 186 EIPSSFGNLSSLQVLS 201
P SF LS+L+ LS
Sbjct: 287 LSPRSFYGLSNLRYLS 302
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 125 LRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLS 184
+ +L L +N P N + +L L GFN + P LP L++L + N LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 185 GEIPSSF---GNLSSLQVLSASANQ 206
+F NL+ L ++S S ++
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHK 111
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 125 LRILRLDNNTFGGQ-IPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNL 183
L +L++ N+F +PD + L L L +LE P SL L++L + NN
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 184 SGEIPSSFGNLSSLQVLSASANQFV 208
+ L+SLQVL S N +
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIM 531
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
+IPDN+ K +L L FN L S P+L++L + + ++ +LS L
Sbjct: 21 KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257
L + N S L ++ + L+ F I +L TL + + N ++
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 258 SLPSDLGFTLPNLEVLNLGANQ 279
+ L NLE L+L +N+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNK 160
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 125 LRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLS 184
+ +L L +N N + +L SL +GFN + P LP L++L + N LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 185 GEIPSSFG---NLSSLQVLSASA-----NQFVGQ 210
+F NL+ L ++S S N FV Q
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 125
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 125 LRILRLDNNTFGGQ-IPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNL 183
L +L++ N+F +PD + L L L +LE P SL L++L + NN
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 184 SGEIPSSFGNLSSLQVLSASANQFV 208
+ L+SLQVL S N +
Sbjct: 531 FSLDTFPYKCLNSLQVLDYSLNHIM 555
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
+IPDN+ K +L L FN L S P+L++L + + ++ +LS L
Sbjct: 45 KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 102
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257
L + N S L ++ + L+ F I +L TL + + N ++
Sbjct: 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162
Query: 258 SLPSDLGFTLPNLEVLNLGANQ 279
+ L NLE L+L +N+
Sbjct: 163 FKLPEYFSNLTNLEHLDLSSNK 184
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 125 LRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLS 184
+ +L L +N N + +L SL +GFN + P LP L++L + N LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 185 GEIPSSFG---NLSSLQVLSASA-----NQFVGQ 210
+F NL+ L ++S S N FV Q
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 139 IPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQ 198
IP ++ +K SL L FN++ G L + L++L++ S+ ++ +F +L SL+
Sbjct: 46 IPSGLTAAMK--SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 103
Query: 199 VLSASANQFVGQIPATLSELKRMRYISFGGN 229
L S N + L ++Y++ GN
Sbjct: 104 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 94/235 (40%), Gaps = 61/235 (25%)
Query: 142 NISHCIKLESLRLG---FNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQ 198
++ C L+ L L N +EG LGSL L + N+LS S FG LSSL+
Sbjct: 71 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL---SDNHLSSLSSSWFGPLSSLK 127
Query: 199 VLSASANQF-------------------VGQIPATLSELKRMRYISFGGNKLSGEIP--- 236
L+ N + +G + T SE++R I F G E+
Sbjct: 128 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-ETFSEIRR---IDFAGLTSLNELEIKA 183
Query: 237 -----FSIYNLSTLSDFHFPFNQLRGS-----LPSDLGFTLPNLEV--LNLGANQFTGPI 284
+ +L ++ D H L S + +D+ ++ LE+ NL QF+ P+
Sbjct: 184 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS-PL 242
Query: 285 PASISNASNLMRLGIPMN--GFRGKV---PSFGNLHKLQRVIISMNHLGNGEKDD 334
P + PM FRG V SF L KL R I+ ++ + E DD
Sbjct: 243 PVD--------EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV---EFDD 286
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 6/146 (4%)
Query: 185 GEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEI-PFSIYNLS 243
E+PS LS+L+ L SAN+F + S + ++S GN E+ + NL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 244 TLSDFHFPFNQLRGSLPSDLGF-TLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMN 302
L + + + S +L L +L+ LNL N+ + L L +
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Query: 303 GFRGKVPS--FGNLHKLQRVIISMNH 326
+ K F NLH L+ +++++H
Sbjct: 411 RLKVKDAQSPFQNLHLLK--VLNLSH 434
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 125 LRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLS 184
+ +L L +N N + +L SL +GFN + P LP L++L + N LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 185 GEIPSSFG---NLSSLQVLSASA-----NQFVGQ 210
+F NL+ L ++S S N FV Q
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 130
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 139 IPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQ 198
IP ++ +K SL L FN++ G L + L++L++ S+ ++ +F +L SL+
Sbjct: 20 IPSGLTAAMK--SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77
Query: 199 VLSASANQFVGQIPATLSELKRMRYISFGGN 229
L S N + L ++Y++ GN
Sbjct: 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 94/235 (40%), Gaps = 61/235 (25%)
Query: 142 NISHCIKLESLRLG---FNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQ 198
++ C L+ L L N +EG LGSL L + N+LS S FG LSSL+
Sbjct: 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL---SDNHLSSLSSSWFGPLSSLK 101
Query: 199 VLSASANQF-------------------VGQIPATLSELKRMRYISFGGNKLSGEIP--- 236
L+ N + +G + T SE++R I F G E+
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-ETFSEIRR---IDFAGLTSLNELEIKA 157
Query: 237 -----FSIYNLSTLSDFHFPFNQLRGS-----LPSDLGFTLPNLEV--LNLGANQFTGPI 284
+ +L ++ D H L S + +D+ ++ LE+ NL QF+ P+
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS-PL 216
Query: 285 PASISNASNLMRLGIPMN--GFRGKV---PSFGNLHKLQRVIISMNHLGNGEKDD 334
P + PM FRG V SF L KL R I+ ++ + E DD
Sbjct: 217 PVD--------EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV---EFDD 260
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 186 EIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTL 245
E+P + + L+ L+ + N +PA+++ L R+R +S E+P + +
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 246 SDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTG--PIPASISNASNLMRLGIPMNG 303
+ L NL+ L L ++TG +PASI+N NL L I +
Sbjct: 177 GEHQ----------------GLVNLQSLRL---EWTGIRSLPASIANLQNLKSLKIRNSP 217
Query: 304 FRGKVPSFGNLHKLQRV 320
P+ +L KL+ +
Sbjct: 218 LSALGPAIHHLPKLEEL 234
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
IP N++ ++LE L L N L+ PG L LR L + ++ ++F +L SL
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGN 229
+ L+ S N + + L R+ + N
Sbjct: 229 EELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 72/181 (39%), Gaps = 4/181 (2%)
Query: 101 LRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLG-FNEL 159
L L L +N +A YL +LR L L NN + L L LG L
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 160 EGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELK 219
E L LR L + NL +IP + L L+ L S N+ P + L
Sbjct: 145 EYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 220 RMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQ 279
+R + +++ + +L +L + + N L SLP DL L LE ++L N
Sbjct: 203 SLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHNP 261
Query: 280 F 280
+
Sbjct: 262 W 262
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 125 LRILRLDNNTFGGQ-IPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNL 183
L +L++ N+F +PD + L L L +LE P SL L++L + NN
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 184 SGEIPSSFGNLSSLQVLSASANQFV 208
+ L+SLQVL S N +
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIM 236
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 152 LRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQI 211
L L N L+ G L L L + N L F L+SL L+ S NQ
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 212 PATLSELKRMRYISFGGNKLSGEIPFSIYN-LSTLSDFHFPFNQLRGSLPSDLGFTLPNL 270
+L +++ ++ N+L +P +++ L+ L D NQL+ S+P + L +L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSL 150
Query: 271 EVLNLGANQFTGPIPA 286
+ + L N + P
Sbjct: 151 QYIWLHDNPWDCTCPG 166
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 33/88 (37%)
Query: 149 LESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFV 208
L L L N+L+ G L +L+ L +++N L F L+ L+ L NQ
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Query: 209 GQIPATLSELKRMRYISFGGNKLSGEIP 236
L ++YI N P
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
IP N++ ++LE L L N L+ PG L LR L + ++ ++F +L SL
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGN 229
+ L+ S N + + L R+ + N
Sbjct: 229 EELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 72/181 (39%), Gaps = 4/181 (2%)
Query: 101 LRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLG-FNEL 159
L L L +N +A YL +LR L L NN + L L LG L
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 160 EGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELK 219
E L LR L + NL +IP + L L+ L S N+ P + L
Sbjct: 145 EYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 220 RMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQ 279
+R + +++ + +L +L + + N L SLP DL L LE ++L N
Sbjct: 203 SLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHNP 261
Query: 280 F 280
+
Sbjct: 262 W 262
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157
L+ L L L N N P A L L L L+ N P IS+ L L L FN
Sbjct: 264 LTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319
Query: 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSE 217
+ P + SL KL+ L ++N +S SS NL+++ LSA NQ P L+
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN 373
Query: 218 LKRMRYI 224
L R+ +
Sbjct: 374 LTRITQL 380
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
+IP N+ I +RL N ++ PG KLR + + +N +S P +F L SL
Sbjct: 25 EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 198 QVLSASANQFVGQIPATLSE 217
L N+ + ++P +L E
Sbjct: 83 NSLVLYGNK-ITELPKSLFE 101
>pdb|2V4U|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain In Complex
With 5-Oxo-L-Norleucine
Length = 289
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 282 GPIPASIS----NASNL---MRLGIPMNGFR----------GKVPSFGNLHKLQRVIISM 324
P+P I N NL MRLGI F+ G VP H+ R ++
Sbjct: 155 APVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHR-HRFEVNP 213
Query: 325 NHLGNGEKDDLEFVNSLVNASRLELLQI 352
N + E++DL FV V+ R+E++++
Sbjct: 214 NLIKQFEQNDLSFVGQDVDGDRMEIIEL 241
>pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain
Length = 289
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 282 GPIPASIS----NASNL---MRLGIPMNGFR----------GKVPSFGNLHKLQRVIISM 324
P+P I N NL MRLGI F+ G VP H+ R ++
Sbjct: 155 APVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHR-HRFEVNP 213
Query: 325 NHLGNGEKDDLEFVNSLVNASRLELLQI 352
N + E++DL FV V+ R+E++++
Sbjct: 214 NLIKQFEQNDLSFVGQDVDGDRMEIIEL 241
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157
L+ L L L N N P A L L L L+ N P IS+ L L L FN
Sbjct: 259 LTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 314
Query: 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSE 217
+ P + SL KL+ L ++N +S SS NL+++ LSA NQ P L+
Sbjct: 315 NISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN 368
Query: 218 LKRMRYI 224
L R+ +
Sbjct: 369 LTRITQL 375
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157
L+ L L L N N P A L L L L+ N P IS+ L L L FN
Sbjct: 260 LTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSE 217
+ P + SL KL+ L ++N +S SS NL+++ LSA NQ P L+
Sbjct: 316 NISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 369
Query: 218 LKRMRYI 224
L R+ +
Sbjct: 370 LTRITQL 376
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
+IP N+ I +RL N ++ PG KLR + + +N +S P +F L SL
Sbjct: 25 EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 198 QVLSASANQFVGQIPATLSE 217
L N+ + ++P +L E
Sbjct: 83 NSLVLYGNK-ITELPKSLFE 101
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 74/257 (28%)
Query: 93 PHIGNLSFLRVLSLKNNSFRN--EIPRAIGYLFR----------------LRILRLDNNT 134
P + N SFL+++ + NNS + ++P ++ ++ L + DNN+
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS 206
Query: 135 FGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNL 194
++PD + LES+ G N LE ++P +L +LP L + NNL +P +L
Sbjct: 207 L-KKLPD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTT-IYADNNLLKTLPDLPPSL 259
Query: 195 SSLQVLSASANQFVGQIPATLSELKR-MRYISFGGNKLSG--EIPFSIYNLSTLSDFHFP 251
+L V + ++ +P EL + + ++ N SG E+P ++Y L+ S
Sbjct: 260 EALNV----RDNYLTDLP----ELPQSLTFLDVSENIFSGLSELPPNLYYLNASS----- 306
Query: 252 FNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSF 311
N++R L P+LE LN+ N+ ++P+
Sbjct: 307 -NEIRS-----LCDLPPSLEELNVSNNKLI-------------------------ELPAL 335
Query: 312 GNLHKLQRVIISMNHLG 328
+L+R+I S NHL
Sbjct: 336 P--PRLERLIASFNHLA 350
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 7/130 (5%)
Query: 101 LRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELE 160
L L+L N A L L L L N G + KLE L L +N +
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 161 GKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKR 220
LP L+ L + +N L F L+SLQ + N + P R
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-------R 413
Query: 221 MRYISFGGNK 230
+ Y+S NK
Sbjct: 414 IDYLSRWLNK 423
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 95 IGNLSFLRV------LSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIK 148
+ +L FL+V L ++NN+FR L L IL+LD N F +
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLAN 104
Query: 149 LESLRLGFNELEGKVPGK--LGSLPKLRILVIHSNNLSGEIPSSFG-NLSSLQVLSASAN 205
LE L L L+G V L L +LV+ NN+ P+SF N+ VL + N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 206 Q 206
+
Sbjct: 165 K 165
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 195 SSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQ 254
S ++ S ++ + + S + ++ N+++ + + L+ L + N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 255 LRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS--FG 312
L GS+ S + L LEVL+L N S NL L + N + VP F
Sbjct: 335 L-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFD 392
Query: 313 NLHKLQRVIISMN 325
L LQ++ + N
Sbjct: 393 RLTSLQKIWLHTN 405
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 144 SHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSS-FGNLSSLQVLSA 202
SH LE L L NE+ L L L + S N G I S F NL L+VL
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL-SQNFLGSIDSRMFENLDKLEVLDL 354
Query: 203 SANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYN-LSTLSDFHFPFNQLRGSLP 260
S N + L ++ ++ N+L +P I++ L++L N S P
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 95 IGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154
+ +L+ L L L NN N P + L +L L+L N P ++ L +L L
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 293
Query: 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIP--------------------SSFGNL 194
N+LE P + +L L L ++ NN+S P SS NL
Sbjct: 294 NENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANL 351
Query: 195 SSLQVLSASANQFVGQIPATLSELKRMRYI 224
+++ LSA NQ P L+ L R+ +
Sbjct: 352 TNINWLSAGHNQISDLTP--LANLTRITQL 379
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 95 IGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154
+ +L+ L L L NN N P + L +L L+L N P ++ L +L L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 289
Query: 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIP--------------------SSFGNL 194
N+LE P + +L L L ++ NN+S P SS NL
Sbjct: 290 NENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANL 347
Query: 195 SSLQVLSASANQFVGQIPATLSELKRMRYI 224
+++ LSA NQ P L+ L R+ +
Sbjct: 348 TNINWLSAGHNQISDLTP--LANLTRITQL 375
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 95 IGNLSFLRV------LSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIK 148
+ +L FL+V L ++NN+FR L L IL+LD N F +
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLAN 104
Query: 149 LESLRLGFNELEGKVPGK--LGSLPKLRILVIHSNNLSGEIPSSFG-NLSSLQVLSASAN 205
LE L L L+G V L L +LV+ NN+ P+SF N+ VL + N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 206 Q 206
+
Sbjct: 165 K 165
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 144 SHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSAS 203
SH LE L L NE+ L L+ L + +N L F L+SLQ +
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 355
Query: 204 ANQFVGQIPATLSELKRMRYISFGGNK 230
N + P R+ Y+S NK
Sbjct: 356 TNPWDCSCP-------RIDYLSRWLNK 375
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
+L+ L L E+E L L L++ N + P SF L+SL+ L A +
Sbjct: 52 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 111
Query: 208 VGQIPATLSELKRMRYISFGGNKL-SGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFT 266
+ +L ++ ++ N + S ++P NL+ L +N ++ +DL F
Sbjct: 112 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 171
Query: 267 LPNLEVLNLGANQFTGPI 284
N +V NL + PI
Sbjct: 172 RENPQV-NLSLDMSLNPI 188
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
+L+ L L E+E L L L++ N + P SF L+SL+ L A +
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 208 VGQIPATLSELKRMRYISFGGNKL-SGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFT 266
+ +L ++ ++ N + S ++P NL+ L +N ++ +DL F
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176
Query: 267 LPNLEVLNLGANQFTGPI 284
N +V NL + PI
Sbjct: 177 RENPQV-NLSLDMSLNPI 193
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 34/93 (36%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207
+L L L N+++ G L KL IL +H N L F L+ L+ L+ NQ
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Query: 208 VGQIPATLSELKRMRYISFGGNKLSGEIPFSIY 240
L ++ I N P Y
Sbjct: 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
+IPDN+ K +L L FN L S P+L++L + + ++ +LS L
Sbjct: 22 KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 79
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257
L + N S L ++ + L+ F I +L TL + + N ++
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 139
Query: 258 SLPSDLGFTLPNLEVLNLGANQ 279
+ L NLE L+L +N+
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNK 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
+IPDN+ K +L L FN L S P+L++L + + ++ +LS L
Sbjct: 21 KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257
L + N S L ++ + L+ F I +L TL + + N ++
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 258 SLPSDLGFTLPNLEVLNLGANQ 279
+ L NLE L+L +N+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNK 160
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 138 QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL 197
+IPDN+ K +L L FN L S P+L++L + + ++ +LS L
Sbjct: 23 KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 80
Query: 198 QVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257
L + N S L ++ + L+ F I +L TL + + N ++
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQS 140
Query: 258 SLPSDLGFTLPNLEVLNLGANQ 279
+ L NLE L+L +N+
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNK 162
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 175 ILVIHSNNLSGEIP--SSFGNLSSLQ--VLSASANQFVGQIPATLSELKRMRYISFGGNK 230
+ ++H NN G + ++ G + + + A Q VG++P LS+LK + +SF G+K
Sbjct: 167 VSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLK-VDLMSFSGHK 225
Query: 231 LSG 233
+ G
Sbjct: 226 IYG 228
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 175 ILVIHSNNLSGEIP--SSFGNLSSLQ--VLSASANQFVGQIPATLSELKRMRYISFGGNK 230
+ ++H NN G + ++ G + + + A Q VG++P LS+LK + +SF G+K
Sbjct: 148 VSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLK-VDLMSFSGHK 206
Query: 231 LSG 233
+ G
Sbjct: 207 IYG 209
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGN-LSSLQVLSASANQ 206
+L+ L L NEL+ PG L PKL L + +NNL+ E+P+ N L +L L N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 207 F 207
Sbjct: 184 L 184
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 268 PNLEVLNLGANQFTGPIPASI-SNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNH 326
PN+++++LG T PIP I S+ SN + G+RG GN L++ I +
Sbjct: 68 PNVQLISLGTGDTTEPIPEQITSHMSNFAHGLSTVEGYRGYGLEQGN-KTLRKAIAETFY 126
Query: 327 LGNGEKDDLEFVN--SLVNASRLELL 350
K + FV+ + + SRL+LL
Sbjct: 127 RDLHVKSNEVFVSDGAQSDISRLQLL 152
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGN 193
+L+ L L NEL+ PG L PKL L + +NNL+ E+P+ N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGN 193
+L+ L L NEL+ PG L PKL L + +NNL+ E+P+ N
Sbjct: 126 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 170
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGN-LSSLQVLSASANQ 206
+L+ L L NEL+ PG L PKL L + +NNL+ E+P+ N L +L L N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 207 F 207
Sbjct: 184 L 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGN-LSSLQVLSASANQ 206
+L+ L L NEL+ PG L PKL L + +NNL+ E+P+ N L +L L N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 207 F 207
Sbjct: 184 L 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 192 GNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFP 251
G L L L S NQ + +P L + + N+L+ ++ L L + +
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 252 FNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISN 290
N+L+ +LP L P LE L+L NQ T +PA + N
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLN 169
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 192 GNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFP 251
G L L L S NQ + +P L + + N+L+ ++ L L + +
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 252 FNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNA 291
N+L+ +LP L P LE L+L NQ T +PA + N
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNG 170
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 192 GNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFP 251
G L L L S NQ + +P L + + N+L+ ++ L L + +
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 252 FNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNA 291
N+L+ +LP L P LE L+L NQ T +PA + N
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNG 170
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 192 GNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFP 251
G L L L S NQ + +P L + + N+L+ ++ L L + +
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 252 FNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNA 291
N+L+ +LP L P LE L+L NQ T +PA + N
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNG 170
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGN-LSSLQVLSASANQ 206
+L+ L L NEL+ PG L PKL L + +N+L+ E+P+ N L +L L N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 207 F 207
Sbjct: 184 L 184
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 174 RILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG 233
++L ++ N ++ P F +L+ L L+ + NQ +L ++ +++ N+L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK- 101
Query: 234 EIPFSIY-NLSTLSDFHFPFNQLRGSLPSDLGF 265
IP ++ NL +L+ + FN SD+ +
Sbjct: 102 SIPMGVFDNLKSLTHIYL-FNNPWDCECSDILY 133
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 113 NEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL---GFNELEGKVPGKLGS 169
N IP G ++ L L NN ++ C+ L++L L G N +E LGS
Sbjct: 44 NSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 170 LPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF--VGQIPATLSELKRMRYISFG 227
L L + + +NLS S F LSSL L+ N + +G+ + S L +++ + G
Sbjct: 102 LEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVG 157
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 113 NEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL---GFNELEGKVPGKLGS 169
N IP G ++ L L NN ++ C+ L++L L G N +E LGS
Sbjct: 18 NSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 170 LPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF--VGQIPATLSELKRMRYISFG 227
L L + + +NLS S F LSSL L+ N + +G+ + S L +++ + G
Sbjct: 76 LEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVG 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,818,609
Number of Sequences: 62578
Number of extensions: 398732
Number of successful extensions: 1253
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 248
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)