Query 036656
Match_columns 367
No_of_seqs 335 out of 4366
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:13:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.8E-43 1.3E-47 357.3 28.1 325 31-366 27-377 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-35 2.7E-40 303.6 21.0 289 75-366 118-425 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.2E-31 2.7E-36 239.8 4.1 284 75-365 125-436 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-30 2.5E-35 233.7 2.1 253 75-329 102-355 (873)
5 KOG0444 Cytoskeletal regulator 99.9 5.8E-29 1.3E-33 224.7 -5.5 276 75-365 78-358 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.1E-28 4.6E-33 221.1 -4.1 268 91-366 47-336 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 5.9E-27 1.3E-31 201.4 -6.3 113 239-363 431-544 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3.1E-26 6.7E-31 197.0 -13.1 242 77-329 70-311 (565)
9 PRK15387 E3 ubiquitin-protein 99.9 9.9E-22 2.2E-26 189.5 15.1 183 148-365 283-465 (788)
10 PLN03210 Resistant to P. syrin 99.9 1.9E-20 4.1E-25 192.9 22.2 268 76-363 590-887 (1153)
11 PRK15370 E3 ubiquitin-protein 99.9 4.8E-21 1E-25 185.8 14.2 250 76-358 179-428 (754)
12 PRK15370 E3 ubiquitin-protein 99.9 1.4E-20 3.1E-25 182.4 16.9 299 27-365 57-407 (754)
13 PLN03210 Resistant to P. syrin 99.8 7.5E-20 1.6E-24 188.5 19.8 263 75-356 611-904 (1153)
14 KOG4237 Extracellular matrix p 99.8 3.6E-23 7.7E-28 177.8 -4.4 255 75-330 67-361 (498)
15 cd00116 LRR_RI Leucine-rich re 99.8 2.6E-22 5.7E-27 180.3 0.7 277 79-357 2-319 (319)
16 KOG0618 Serine/threonine phosp 99.8 1.8E-22 4E-27 190.1 -2.5 243 100-355 242-510 (1081)
17 KOG0618 Serine/threonine phosp 99.8 2.5E-22 5.5E-27 189.2 -2.6 245 97-356 217-487 (1081)
18 PRK15387 E3 ubiquitin-protein 99.8 5.7E-19 1.2E-23 170.6 14.8 241 77-367 203-443 (788)
19 cd00116 LRR_RI Leucine-rich re 99.8 7.6E-21 1.6E-25 170.8 0.1 255 103-360 2-293 (319)
20 KOG4237 Extracellular matrix p 99.7 1.8E-20 3.9E-25 161.3 -5.7 253 100-358 68-359 (498)
21 KOG0617 Ras suppressor protein 99.7 3.4E-20 7.3E-25 142.3 -5.0 82 98-182 32-113 (264)
22 KOG0617 Ras suppressor protein 99.7 8.4E-20 1.8E-24 140.2 -4.8 162 121-311 31-192 (264)
23 PLN03150 hypothetical protein; 99.6 1.1E-14 2.3E-19 141.0 14.1 150 28-182 367-526 (623)
24 COG4886 Leucine-rich repeat (L 99.4 1.2E-12 2.6E-17 121.1 8.1 197 127-332 97-294 (394)
25 KOG0532 Leucine-rich repeat (L 99.3 1E-14 2.3E-19 131.6 -7.4 195 148-356 76-271 (722)
26 KOG3207 Beta-tubulin folding c 99.3 5.9E-14 1.3E-18 123.0 -3.1 209 120-331 118-342 (505)
27 COG4886 Leucine-rich repeat (L 99.3 2.6E-12 5.7E-17 118.8 6.6 198 103-310 97-295 (394)
28 KOG1909 Ran GTPase-activating 99.3 3E-13 6.4E-18 115.6 0.1 242 75-327 30-310 (382)
29 KOG0532 Leucine-rich repeat (L 99.3 1.2E-13 2.5E-18 125.0 -4.0 195 98-303 74-271 (722)
30 KOG1909 Ran GTPase-activating 99.3 3.4E-13 7.4E-18 115.2 -2.1 253 92-358 23-311 (382)
31 KOG1259 Nischarin, modulator o 99.3 1.6E-12 3.5E-17 109.1 1.9 222 98-331 181-415 (490)
32 PF14580 LRR_9: Leucine-rich r 99.2 1.4E-11 3E-16 98.6 5.9 126 218-352 18-147 (175)
33 KOG1259 Nischarin, modulator o 99.2 2.6E-12 5.7E-17 107.8 1.6 209 91-309 206-416 (490)
34 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.2E-17 114.4 -1.6 211 96-306 118-340 (505)
35 PLN03150 hypothetical protein; 99.2 8E-11 1.7E-15 114.2 8.7 109 124-232 419-528 (623)
36 PF14580 LRR_9: Leucine-rich r 99.1 3.2E-11 6.9E-16 96.5 4.3 124 194-322 18-147 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.1 1.7E-10 3.7E-15 114.6 7.1 105 76-181 546-652 (889)
38 KOG0531 Protein phosphatase 1, 99.0 2.9E-11 6.3E-16 112.2 -2.1 250 97-362 70-322 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.9 3.5E-10 7.5E-15 112.4 3.0 231 97-329 543-808 (889)
40 KOG0531 Protein phosphatase 1, 98.9 1.3E-10 2.8E-15 107.9 -2.9 218 120-357 69-289 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 2.6E-09 5.6E-14 70.4 3.6 58 269-326 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.8 3.9E-09 8.5E-14 69.5 3.2 57 125-181 3-59 (61)
43 KOG2120 SCF ubiquitin ligase, 98.6 3.6E-10 7.8E-15 95.0 -6.7 177 148-326 186-374 (419)
44 COG5238 RNA1 Ran GTPase-activa 98.6 8.2E-09 1.8E-13 85.9 0.9 86 75-160 30-133 (388)
45 KOG2982 Uncharacterized conser 98.6 3.5E-09 7.7E-14 89.1 -1.5 234 97-351 43-285 (418)
46 PF08263 LRRNT_2: Leucine rich 98.6 1.2E-07 2.6E-12 57.2 4.5 40 32-71 2-43 (43)
47 KOG1859 Leucine-rich repeat pr 98.5 1.3E-09 2.9E-14 101.8 -6.4 178 164-357 102-291 (1096)
48 KOG1859 Leucine-rich repeat pr 98.5 1.7E-09 3.6E-14 101.2 -6.6 198 120-330 84-294 (1096)
49 KOG2982 Uncharacterized conser 98.5 2.1E-08 4.6E-13 84.5 0.1 165 192-361 94-265 (418)
50 KOG4579 Leucine-rich repeat (L 98.3 2.1E-08 4.7E-13 74.8 -4.0 85 242-328 52-136 (177)
51 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-08 3.7E-13 85.1 -5.2 180 171-355 185-373 (419)
52 COG5238 RNA1 Ran GTPase-activa 98.3 4.8E-07 1E-11 75.6 3.0 241 117-358 24-316 (388)
53 KOG3665 ZYG-1-like serine/thre 98.1 1.1E-06 2.5E-11 85.6 2.6 151 195-353 122-283 (699)
54 KOG1644 U2-associated snRNP A' 98.1 5.6E-06 1.2E-10 66.3 5.6 104 123-228 42-149 (233)
55 PF12799 LRR_4: Leucine Rich r 98.1 5.3E-06 1.1E-10 50.1 3.6 36 269-305 2-37 (44)
56 KOG1644 U2-associated snRNP A' 98.1 7E-06 1.5E-10 65.8 5.2 103 219-324 42-149 (233)
57 PF12799 LRR_4: Leucine Rich r 98.0 9.8E-06 2.1E-10 48.9 4.0 36 100-136 2-37 (44)
58 PRK15386 type III secretion pr 98.0 5.5E-05 1.2E-09 68.5 10.0 137 95-253 48-187 (426)
59 KOG4579 Leucine-rich repeat (L 98.0 4.5E-07 9.8E-12 67.9 -2.7 84 75-160 53-136 (177)
60 PRK15386 type III secretion pr 97.8 5.8E-05 1.3E-09 68.3 7.8 136 143-303 48-188 (426)
61 KOG4341 F-box protein containi 97.6 1.7E-06 3.7E-11 76.5 -5.1 276 75-355 138-436 (483)
62 PF13306 LRR_5: Leucine rich r 97.5 0.0006 1.3E-08 52.1 7.7 14 143-156 31-44 (129)
63 KOG2739 Leucine-rich acidic nu 97.5 6.3E-05 1.4E-09 62.9 2.1 63 267-329 64-130 (260)
64 KOG3665 ZYG-1-like serine/thre 97.4 9.1E-05 2E-09 72.5 2.9 141 219-361 122-266 (699)
65 PF13306 LRR_5: Leucine rich r 97.4 0.00096 2.1E-08 51.0 7.6 122 94-221 7-128 (129)
66 PF00560 LRR_1: Leucine Rich R 97.3 0.00013 2.9E-09 36.6 1.2 21 346-367 1-21 (22)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00042 9.1E-09 58.1 2.6 89 94-184 38-129 (260)
68 KOG2123 Uncharacterized conser 96.8 8.1E-05 1.8E-09 62.8 -3.2 103 243-351 19-123 (388)
69 KOG1947 Leucine rich repeat pr 96.7 0.00013 2.8E-09 69.4 -3.5 109 98-206 187-306 (482)
70 KOG2123 Uncharacterized conser 96.2 0.00021 4.7E-09 60.3 -4.3 101 170-274 18-123 (388)
71 KOG4341 F-box protein containi 96.1 8.1E-05 1.8E-09 66.2 -7.7 258 99-358 138-414 (483)
72 KOG1947 Leucine rich repeat pr 95.6 0.0014 3.1E-08 62.2 -2.2 160 170-329 187-376 (482)
73 PF13504 LRR_7: Leucine rich r 95.5 0.0067 1.4E-07 28.2 0.9 16 346-362 2-17 (17)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0074 1.6E-07 30.2 0.6 18 125-143 2-19 (22)
75 KOG4308 LRR-containing protein 95.1 0.00012 2.5E-09 68.7 -11.2 183 148-330 88-305 (478)
76 KOG3864 Uncharacterized conser 94.6 0.0044 9.5E-08 50.1 -1.9 81 221-301 103-185 (221)
77 PF13516 LRR_6: Leucine Rich r 94.3 0.0032 7E-08 32.3 -2.3 20 345-364 2-21 (24)
78 KOG3864 Uncharacterized conser 93.7 0.014 3E-07 47.3 -0.8 80 245-325 103-186 (221)
79 KOG4308 LRR-containing protein 93.5 0.00027 5.9E-09 66.3 -12.4 203 101-303 89-329 (478)
80 KOG0473 Leucine-rich repeat pr 92.8 0.0013 2.8E-08 54.3 -7.8 83 75-160 42-124 (326)
81 smart00370 LRR Leucine-rich re 92.6 0.087 1.9E-06 27.4 1.6 19 345-364 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 92.6 0.087 1.9E-06 27.4 1.6 19 345-364 2-20 (26)
83 KOG0473 Leucine-rich repeat pr 91.1 0.0054 1.2E-07 50.8 -6.1 89 93-184 36-124 (326)
84 smart00369 LRR_TYP Leucine-ric 90.1 0.36 7.8E-06 25.0 2.4 19 243-262 2-20 (26)
85 smart00370 LRR Leucine-rich re 90.1 0.36 7.8E-06 25.0 2.4 19 243-262 2-20 (26)
86 smart00364 LRR_BAC Leucine-ric 89.9 0.2 4.4E-06 26.0 1.2 18 345-363 2-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 76.8 2 4.4E-05 22.3 1.5 14 345-358 2-15 (26)
88 smart00368 LRR_RI Leucine rich 76.3 2 4.3E-05 22.7 1.5 14 345-358 2-15 (28)
89 KOG3763 mRNA export factor TAP 74.5 2.1 4.5E-05 40.5 2.1 37 242-278 217-254 (585)
90 KOG3763 mRNA export factor TAP 71.2 2.5 5.4E-05 40.0 1.7 66 217-283 216-285 (585)
91 KOG4242 Predicted myosin-I-bin 66.0 18 0.00039 33.9 6.0 13 314-326 439-451 (553)
92 smart00367 LRR_CC Leucine-rich 62.7 4.6 9.9E-05 20.7 1.1 12 344-355 1-12 (26)
93 KOG4242 Predicted myosin-I-bin 57.8 1.1E+02 0.0023 29.1 9.3 109 220-328 355-481 (553)
94 PF05399 EVI2A: Ectropic viral 45.9 40 0.00087 27.7 4.3 42 2-49 131-172 (227)
95 COG5510 Predicted small secret 34.4 67 0.0014 19.0 2.8 19 1-19 1-19 (44)
96 KOG1665 AFH1-interacting prote 31.3 58 0.0013 27.2 3.1 12 244-255 197-208 (302)
97 TIGR00864 PCC polycystin catio 27.8 39 0.00085 39.0 2.1 32 274-305 1-32 (2740)
98 PRK10081 entericidin B membran 25.4 1.1E+02 0.0023 18.7 2.8 16 1-16 1-16 (48)
99 TIGR00864 PCC polycystin catio 23.8 66 0.0014 37.4 2.9 33 225-257 1-33 (2740)
100 PF01456 Mucin: Mucin-like gly 23.6 52 0.0011 25.3 1.7 18 1-18 1-18 (143)
101 TIGR01004 PulS_OutS lipoprotei 22.7 2.5E+02 0.0054 21.3 4.9 22 1-22 1-22 (128)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.8e-43 Score=357.35 Aligned_cols=325 Identities=34% Similarity=0.572 Sum_probs=210.8
Q ss_pred CHHhHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCC
Q 036656 31 NETDQLALLEFKAKITYDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNS 110 (367)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 110 (367)
.+.|+.+|.+|++.+. +|...+.+|....++|.|.|+.|... .+|+.|+++++++.|.++..+..+++|+.|++++|+
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 4578999999999986 67667789988889999999999854 699999999999999999999999999999999999
Q ss_pred CCCCcchhhc-CCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCC
Q 036656 111 FRNEIPRAIG-YLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPS 189 (367)
Q Consensus 111 l~~~~~~~l~-~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 189 (367)
+++.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|.
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 9888887654 777788888777777655543 2344555555555555444444455555555555555554444444
Q ss_pred CCCCCCCCCEEEcccCcC------------------------cccCCcccCCCCCCCEEEeecCcCccccCccccCCCCC
Q 036656 190 SFGNLSSLQVLSASANQF------------------------VGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTL 245 (367)
Q Consensus 190 ~l~~l~~L~~L~l~~n~~------------------------~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 245 (367)
.++++++|++|++++|.+ .+.+|..+..+++|++|++++|.+.+..|..+.++++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 444444555555544444 44444444445555555555555544445555555555
Q ss_pred CEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccC
Q 036656 246 SDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISM 324 (367)
Q Consensus 246 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~ 324 (367)
++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|. +..+++|+.|++++
T Consensus 263 ~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred CEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 5555555555544444444 355555555555555555555555555555555555555555554 55556666666666
Q ss_pred CcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 325 NHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 325 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
|.+++. .+..+..+++|+.|++++|+++|.+|+++|
T Consensus 342 n~l~~~------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 342 NKFSGE------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred CCCcCc------CChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 666555 344556677777777777777777777665
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-35 Score=303.55 Aligned_cols=289 Identities=35% Similarity=0.563 Sum_probs=169.3
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.+++++|++.+.+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 4566777777776665553 34556666666666666566666666666666666666665566666666666666666
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|.+.+..|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 66666655565666666666666666666555555556666666666666665555555555566666666666655555
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCC
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGN 313 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~ 313 (367)
.|..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|. ++.
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 555555555555555555555555554443 455555555555555555555555555555555555555554444 445
Q ss_pred CCCCCEEEccCCcCCCcCCCch------------------hhhhhhcCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 314 LHKLQRVIISMNHLGNGEKDDL------------------EFVNSLVNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 314 ~~~L~~L~l~~n~l~~~~~~~~------------------~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
+++|+.|++++|++++.+|..+ ..+..+..+++|+.|++++|+++|.+|+.|+
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 5555555555555544433221 1334455667777777777777777776553
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-31 Score=239.79 Aligned_cols=284 Identities=20% Similarity=0.201 Sum_probs=193.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
++++.++|.+|.|...-...+..++.|++|||+.|.++..--..|..-.++++|++++|.|+..-...|.++.+|.+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 57888888888777665566666666666666666665333334444455666666666665444445555555555556
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccc------------------------cccCCCCCCCCCCCCEEEcccCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNL------------------------SGEIPSSFGNLSSLQVLSASANQFVGQ 210 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~------------------------~~~~~~~l~~l~~L~~L~l~~n~~~~~ 210 (367)
++|+++...+..|.++++|+.|++..|.+ .......|-.+.++++|++..|++...
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 55555544444455555555555555544 333334445556666777777777655
Q ss_pred CCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhC
Q 036656 211 IPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISN 290 (367)
Q Consensus 211 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 290 (367)
-..++.++..|+.|++++|.|....++....+++|++|+|+.|+++ .+++..+..+..|++|.|++|.++..--..+..
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 5566777777778888888777666777777778888888888887 555554446778888888888877444455677
Q ss_pred CCCCCeEeccCccCcccCCC----CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCC
Q 036656 291 ASNLMRLGIPMNGFRGKVPS----FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAV 365 (367)
Q Consensus 291 l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~ 365 (367)
+++|++|||++|.+...+.. |..++.|+.|++.+|++..+ --.+|..++.|+.|||.+|.|-.--|..|
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I------~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI------PKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec------chhhhccCcccceecCCCCcceeeccccc
Confidence 88899999999988775442 77899999999999998876 44678889999999999998875555554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-30 Score=233.68 Aligned_cols=253 Identities=21% Similarity=0.207 Sum_probs=181.1
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
++++++.+..|.++ .+|......-+|+.|+|.+|.|+....+.+.-++.|++||++.|.++..--..|..-.++++|+|
T Consensus 102 ~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 102 PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred Ccceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 68889999888776 56666666677999999999999888888999999999999999998444456777789999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|+++..-...|..+.+|..|.+++|+++..-+..|.++++|+.|++..|.+.-.--..|.++++|+.|.+..|++...
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 99999988788899999999999999999944445677799999999999988644345566677777777777766654
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCC
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGN 313 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~ 313 (367)
-...|..+.++++|+|+.|+++..-..+++ .+..|+.|++++|.|....++.++..++|++|+|++|+++...+. |..
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred cCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence 445556666666666666666533333333 456666666666666555555555556666666666665544443 444
Q ss_pred CCCCCEEEccCCcCCC
Q 036656 314 LHKLQRVIISMNHLGN 329 (367)
Q Consensus 314 ~~~L~~L~l~~n~l~~ 329 (367)
+..|++|+|+.|.++.
T Consensus 340 L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDH 355 (873)
T ss_pred HHHhhhhcccccchHH
Confidence 4444444444444443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=5.8e-29 Score=224.71 Aligned_cols=276 Identities=28% Similarity=0.411 Sum_probs=220.6
Q ss_pred CcEEEEEcCCCCccc-ccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCc-cccCCCCCCEE
Q 036656 75 QRVTALLLPSLLLQG-SLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPD-NISHCIKLESL 152 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~-~~~~l~~L~~L 152 (367)
++++++++..|++.. -+|+.+..+..|+.|+|++|+++ ..|..+...+++-.|++++|+|. .+|. -|.++..|-+|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 567778888887754 47888889999999999999998 78888888999999999999998 5665 45678888899
Q ss_pred EeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCc-ccCCcccCCCCCCCEEEeecCcC
Q 036656 153 RLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFV-GQIPATLSELKRMRYISFGGNKL 231 (367)
Q Consensus 153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~ 231 (367)
+|++|++. .+|+.+..+..|+.|.+++|.+....-..+.++++|+.|++++.+-+ ..+|.++..+.+|..+|++.|++
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 99999888 67888888999999999999876544455666778888888776533 46778888888888999998888
Q ss_pred ccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcc-cCCC
Q 036656 232 SGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRG-KVPS 310 (367)
Q Consensus 232 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~ 310 (367)
. ..|..+.++++|+.|+|++|+++ .+..... ...+|++|+++.|+++ .+|..+..+++|+.|.+.+|+++- .+|.
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 7 77888888888999999998887 4554444 4678888888888888 788888888888888888887653 3454
Q ss_pred -CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCC
Q 036656 311 -FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAV 365 (367)
Q Consensus 311 -~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~ 365 (367)
++++..|+.+...+|.+.- .|++++.|..|+.|.|+.|.+. ++|+.+
T Consensus 311 GIGKL~~Levf~aanN~LEl-------VPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLEL-------VPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred chhhhhhhHHHHhhcccccc-------CchhhhhhHHHHHhccccccee-echhhh
Confidence 8888888888888888765 5677788888888888888777 777653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.1e-28 Score=221.10 Aligned_cols=268 Identities=24% Similarity=0.351 Sum_probs=138.3
Q ss_pred cCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCC-CCcCccccCCCCCCEEEeeCCCCCCCCCCcCCC
Q 036656 91 LSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFG-GQIPDNISHCIKLESLRLGFNELEGKVPGKLGS 169 (367)
Q Consensus 91 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 169 (367)
+|..++.+.+|++|.+.+|++. ++...++.++.|+.+++++|++. .-+|+.+..+..|..|+|+.|++. ..|..+..
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~ 124 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY 124 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh
Confidence 3334444444455555555444 33344455555555555555443 234555566666666666666666 45666666
Q ss_pred CCCCcEEEcccccccccCCC-CCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEE
Q 036656 170 LPKLRILVIHSNNLSGEIPS-SFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDF 248 (367)
Q Consensus 170 l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 248 (367)
-+++-.|++++|.+. .+|. .+.++..|-.|+++.|++. .+|..+..+..|++|++++|.+...--..+..+++|+.|
T Consensus 125 AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred hcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 666666666666665 3443 3445566666677776665 455566667777777777776532111222233333333
Q ss_pred ECCCCcCc-ccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcC
Q 036656 249 HFPFNQLR-GSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHL 327 (367)
Q Consensus 249 ~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l 327 (367)
.+++.+-+ ..+|..+- .+.+|+.+|++.|.+. .+|+.+..+++|+.|+|++|.++..-...+.+.+|+.|+++.|++
T Consensus 203 hms~TqRTl~N~Ptsld-~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLD-DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred hcccccchhhcCCCchh-hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 44333221 23344333 3455555555555554 455555555555555555555554333344444444444444444
Q ss_pred CCcCCCch-------------------hhhhhhcCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 328 GNGEKDDL-------------------EFVNSLVNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 328 ~~~~~~~~-------------------~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
+.. |+.. .+|.++.++.+|+++..++|++. .+|+++|
T Consensus 281 t~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglc 336 (1255)
T KOG0444|consen 281 TVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC 336 (1255)
T ss_pred ccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhh
Confidence 431 1000 14455556666666666666655 6666655
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=5.9e-27 Score=201.37 Aligned_cols=113 Identities=27% Similarity=0.394 Sum_probs=76.7
Q ss_pred ccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCC
Q 036656 239 IYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKL 317 (367)
Q Consensus 239 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L 317 (367)
++.+++|+.|++++|-+. .+|...+ .+..|+.+++++|+|. .+|..+..+..++.+-.++|++....+. +.++.+|
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~-~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMG-SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhh-hhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 334455555555555554 4555554 3555555666655555 5555555555555555555565555555 7889999
Q ss_pred CEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCC
Q 036656 318 QRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPE 363 (367)
Q Consensus 318 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~ 363 (367)
..||+.+|.+.. +|..++++.+|+.|++++|+|. .|+
T Consensus 508 ~tLDL~nNdlq~-------IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 508 TTLDLQNNDLQQ-------IPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred ceeccCCCchhh-------CChhhccccceeEEEecCCccC--CCH
Confidence 999999999887 5678899999999999999997 564
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=3.1e-26 Score=196.97 Aligned_cols=242 Identities=28% Similarity=0.423 Sum_probs=131.1
Q ss_pred EEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeC
Q 036656 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGF 156 (367)
Q Consensus 77 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~ 156 (367)
++.+++..+++. ..|+.++.+..++.++.++|+++ ++|+.+..++.|+.+++++|.+. ++|+.++.+..|+.++..+
T Consensus 70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence 344444444443 34444555555555555555554 45555555555555555555555 4555555555555555555
Q ss_pred CCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccC
Q 036656 157 NELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIP 236 (367)
Q Consensus 157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 236 (367)
|+++ ..|+.+.++.++..+++.+|.+. ..|+....++.|++++...|.+. .+|..++.+.+|..|++..|++. .+|
T Consensus 147 N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 147 NQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred cccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence 5555 34455555555555555555554 23333333555555555555543 45555555566666666666555 344
Q ss_pred ccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCC
Q 036656 237 FSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHK 316 (367)
Q Consensus 237 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 316 (367)
.|.++..|++++++.|++. .+|......++++..||+..|++. +.|+.+.-+.+|..||+++|.+++..+.++++ +
T Consensus 223 -ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-h 298 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-H 298 (565)
T ss_pred -CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-e
Confidence 4555555666666655554 455554445556666666666665 55555555555666666666665544445555 5
Q ss_pred CCEEEccCCcCCC
Q 036656 317 LQRVIISMNHLGN 329 (367)
Q Consensus 317 L~~L~l~~n~l~~ 329 (367)
|+.|-+.+|++..
T Consensus 299 L~~L~leGNPlrT 311 (565)
T KOG0472|consen 299 LKFLALEGNPLRT 311 (565)
T ss_pred eeehhhcCCchHH
Confidence 6666666665543
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=9.9e-22 Score=189.49 Aligned_cols=183 Identities=26% Similarity=0.297 Sum_probs=115.9
Q ss_pred CCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEee
Q 036656 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFG 227 (367)
Q Consensus 148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 227 (367)
+|+.|++++|.++ .+|. ..++|++|++++|.+.+ +|.. ..+|+.|++++|.+++ +|. ...+|+.|+++
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc---cccccceEecC
Confidence 3445555555554 2232 12456666666666552 3321 1345555666666552 332 12467777777
Q ss_pred cCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCccc
Q 036656 228 GNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGK 307 (367)
Q Consensus 228 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 307 (367)
+|+++ .+|.. .++|+.|++++|.++ .+|.. +.+|+.|++++|+++ .+|.. .++|+.|++++|.+++
T Consensus 351 ~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss- 416 (788)
T PRK15387 351 DNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS- 416 (788)
T ss_pred CCccC-CCCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-
Confidence 77776 34432 345677777777776 45542 356888888888887 45542 3578888888888874
Q ss_pred CCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCC
Q 036656 308 VPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAV 365 (367)
Q Consensus 308 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~ 365 (367)
+|.+ ..+|+.|++++|+++. +|..+.++++|+.|+|++|+|+|.+|..+
T Consensus 417 IP~l--~~~L~~L~Ls~NqLt~-------LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 417 LPML--PSGLLSLSVYRNQLTR-------LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCcc--hhhhhhhhhccCcccc-------cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4442 3467788888888874 55677789999999999999999988754
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.9e-20 Score=192.92 Aligned_cols=268 Identities=19% Similarity=0.211 Sum_probs=130.6
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEee
Q 036656 76 RVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLG 155 (367)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~ 155 (367)
.++.+++.++.+. .+|..+ ...+|++|++.++.+. .++..+..+++|+.|+++++.....+|. ++.+++|++|+++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 4556666555443 333333 3456666666666654 4555555666666666665543334443 5556666666666
Q ss_pred CCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcccc
Q 036656 156 FNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEI 235 (367)
Q Consensus 156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 235 (367)
+|.....+|..+..+++|+.|++++|.....+|..+ ++++|++|++++|.....+|.. ..+|++|++++|.+. .+
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~l 740 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EF 740 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cc
Confidence 655444556566666666666666554333444433 4555666665555433333321 234445555554443 22
Q ss_pred Cccc------------------------------cCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccc
Q 036656 236 PFSI------------------------------YNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIP 285 (367)
Q Consensus 236 ~~~l------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 285 (367)
|..+ ..+++|++|++++|...+.+|..+. .+++|+.|++++|...+.+|
T Consensus 741 P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 741 PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeC
Confidence 2211 1123444555555444434444443 35555555555543322344
Q ss_pred hhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCC
Q 036656 286 ASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPE 363 (367)
Q Consensus 286 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~ 363 (367)
..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.++. +|..+..+++|+.|++++|+-...+|.
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~-------iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEE-------VPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCcc-------ChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 332 3445555555554332223221 2345555555555443 334455556666666655422223444
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=4.8e-21 Score=185.76 Aligned_cols=250 Identities=23% Similarity=0.362 Sum_probs=193.0
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEee
Q 036656 76 RVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLG 155 (367)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~ 155 (367)
+.+.+++++++++. +|..+. +.|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 46788998888774 455443 47999999999998 5776554 58999999999998 6777654 479999999
Q ss_pred CCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcccc
Q 036656 156 FNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEI 235 (367)
Q Consensus 156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 235 (367)
+|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.++ .+
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-AL 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cC
Confidence 99988 5666553 47999999999988 5676554 589999999999884 454433 57899999999998 45
Q ss_pred CccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCC
Q 036656 236 PFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLH 315 (367)
Q Consensus 236 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 315 (367)
|..+ .++|++|++++|.++ .+|..+ +++|+.|++++|+++ .+|..+ .++|+.|++++|+++..++.+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--H
Confidence 5443 368999999999998 577654 479999999999998 577655 3689999999999985433343 3
Q ss_pred CCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeee
Q 036656 316 KLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 316 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
.|+.|++++|+++. +|.. ++..+..++++..|++.+|+++
T Consensus 389 sL~~LdLs~N~L~~-LP~s--l~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLVR-LPES--LPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCccc-Cchh--HHHHhhcCCCccEEEeeCCCcc
Confidence 68999999999985 3432 4455566788999999999875
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=1.4e-20 Score=182.43 Aligned_cols=299 Identities=24% Similarity=0.354 Sum_probs=219.7
Q ss_pred cCCCCHHhHHHHHHHHHhCCCCCCC--CCCCCCCCCCCCCccc----------------eEecCCCCcEEEEEcCCCCcc
Q 036656 27 ALKSNETDQLALLEFKAKITYDPLE--VLSSWNYSRHFCQWKG----------------VTCSPRHQRVTALLLPSLLLQ 88 (367)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~w~~~~~~c~~~~----------------~~c~~~~~~v~~l~l~~~~~~ 88 (367)
......+|...+.++...+.++++. .-..|....++|.-.. |.|.. ..|+.+.+-+....
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~ 134 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQA 134 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccccc
Confidence 3445778889999888888655542 2345988889996544 44543 45555555332111
Q ss_pred ccc--------------------Cc--------cc-----cCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCC
Q 036656 89 GSL--------------------SP--------HI-----GNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTF 135 (367)
Q Consensus 89 ~~~--------------------~~--------~~-----~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 135 (367)
... +. .+ .-..+...|++++++++ .+|..+. +.|+.|++++|.+
T Consensus 135 ~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~L 211 (754)
T PRK15370 135 SSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNEL 211 (754)
T ss_pred ccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCC
Confidence 000 00 00 01235788999999998 5777654 5899999999999
Q ss_pred CCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCccc
Q 036656 136 GGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATL 215 (367)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 215 (367)
+ .+|..+. .+|++|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.++ .+|..+
T Consensus 212 t-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l 281 (754)
T PRK15370 212 K-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL 281 (754)
T ss_pred C-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc
Confidence 9 7777664 58999999999998 4565543 47999999999988 6676554 58999999999998 466655
Q ss_pred CCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCC
Q 036656 216 SELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLM 295 (367)
Q Consensus 216 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 295 (367)
. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++ .+|..+. ++|+
T Consensus 282 ~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~ 349 (754)
T PRK15370 282 P--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALT-SLPASLP--PELQ 349 (754)
T ss_pred C--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCccc-cCChhhc--Cccc
Confidence 4 58999999999998 4554433 57999999999998 566543 478999999999998 4676553 7999
Q ss_pred eEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCC
Q 036656 296 RLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAV 365 (367)
Q Consensus 296 ~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~ 365 (367)
.|++++|+++. +|. + .++|+.|++++|+++.. | ..+. ..|+.|++++|+++ .+|+++
T Consensus 350 ~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~L-P------~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 350 VLDVSKNQITV-LPETL--PPTITTLDVSRNALTNL-P------ENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred EEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCC-C------HhHH--HHHHHHhhccCCcc-cCchhH
Confidence 99999999984 554 4 36899999999999863 3 2222 26889999999998 777653
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=7.5e-20 Score=188.53 Aligned_cols=263 Identities=19% Similarity=0.208 Sum_probs=197.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.|+++++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 57888999988876 3556677889999999988765446664 788899999999988766688888889999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcc--------------------
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPAT-------------------- 214 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-------------------- 214 (367)
++|.....+|..+ ++++|++|++++|.....+|.. ..+|++|++++|.+. .+|..
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhcc
Confidence 8876555666655 6788888888887654444432 346777777777654 23321
Q ss_pred ----------cCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCcccc
Q 036656 215 ----------LSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPI 284 (367)
Q Consensus 215 ----------l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 284 (367)
....++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|++|++++|.....+
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccc
Confidence 1123578889999888777889999999999999999986555788765 5899999999998655455
Q ss_pred chhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCC-cCCCcCCCchhhhhhhcCCCCCCEEeCcCCe
Q 036656 285 PASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMN-HLGNGEKDDLEFVNSLVNASRLELLQININN 356 (367)
Q Consensus 285 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 356 (367)
|.. ..+|+.|++++|.++..+..+..+++|+.|++++| ++.. ++..+..+++|+.+++++|.
T Consensus 842 p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~-------l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 842 PDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR-------VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc-------cCcccccccCCCeeecCCCc
Confidence 543 36899999999999853333889999999999985 5554 23345567888888888873
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=3.6e-23 Score=177.83 Aligned_cols=255 Identities=19% Similarity=0.191 Sum_probs=173.0
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccC-CCCCCCcCccccCCCCCCEEE
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDN-NTFGGQIPDNISHCIKLESLR 153 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~p~~~~~l~~L~~L~ 153 (367)
...++|+|..|.|+...+..|+.+++|+.|+|++|.|+.+-|++|.++++|.+|-+.+ |+|+......|.++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999999999888877 888844445788999999999
Q ss_pred eeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcc------------cCCcccCCCCCC
Q 036656 154 LGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVG------------QIPATLSELKRM 221 (367)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~~~~~L 221 (367)
+.-|++.-.....|..++++..|.+..|.+...--..+..+..++.+++..|.+.. ..|..++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 99999887777788999999999999998873333377888888888888776321 111112222111
Q ss_pred CEEEeecCcCc-------------------------cccC-ccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEe
Q 036656 222 RYISFGGNKLS-------------------------GEIP-FSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNL 275 (367)
Q Consensus 222 ~~L~l~~n~~~-------------------------~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 275 (367)
.-..+.+.++. +..| ..|..+++|+.|++++|+++ .+.+..+..+..+++|.|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhc
Confidence 11112221111 1111 23455566666666666665 333333335566666666
Q ss_pred ecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCc
Q 036656 276 GANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 276 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 330 (367)
..|++...-...+.++..|+.|+|.+|+|+...|. |..+..|.+|+|-.|++...
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 66665533333455566666666666666655555 66666666666666655543
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=2.6e-22 Score=180.26 Aligned_cols=277 Identities=23% Similarity=0.309 Sum_probs=188.0
Q ss_pred EEEcCCCCcc-cccCccccCCCCCcEEEccCCCCCCC----cchhhcCCCCCcEEEccCCCCCC------CcCccccCCC
Q 036656 79 ALLLPSLLLQ-GSLSPHIGNLSFLRVLSLKNNSFRNE----IPRAIGYLFRLRILRLDNNTFGG------QIPDNISHCI 147 (367)
Q Consensus 79 ~l~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l~~------~~p~~~~~l~ 147 (367)
.|+|..+.++ +.....+..++.|++++++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666666 33455566777788888888887543 45556677778888888877652 2334566778
Q ss_pred CCCEEEeeCCCCCCCCCCcCCCC---CCCcEEEcccccccc----cCCCCCCCC-CCCCEEEcccCcCccc----CCccc
Q 036656 148 KLESLRLGFNELEGKVPGKLGSL---PKLRILVIHSNNLSG----EIPSSFGNL-SSLQVLSASANQFVGQ----IPATL 215 (367)
Q Consensus 148 ~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~----~~~~~l~~l-~~L~~L~l~~n~~~~~----~~~~l 215 (367)
+|+.|++++|.+....+..+..+ ++|++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. +...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 88888888888875444444333 448888888887762 122334555 7889999998888732 33345
Q ss_pred CCCCCCCEEEeecCcCccc----cCccccCCCCCCEEECCCCcCcccCChhh---hcCCCCCCEEEeecCcCccccchhh
Q 036656 216 SELKRMRYISFGGNKLSGE----IPFSIYNLSTLSDFHFPFNQLRGSLPSDL---GFTLPNLEVLNLGANQFTGPIPASI 288 (367)
Q Consensus 216 ~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~l 288 (367)
..+++|++|++++|.+++. ++..+...++|++|++++|.+++.....+ ...+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 6677899999999888742 23344556789999999998864322221 2257889999999998875333332
Q ss_pred h-----CCCCCCeEeccCccCcc----cCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCC-CCCCEEeCcCCee
Q 036656 289 S-----NASNLMRLGIPMNGFRG----KVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNA-SRLELLQININNF 357 (367)
Q Consensus 289 ~-----~l~~L~~L~l~~n~~~~----~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~n~l 357 (367)
. ..+.|++|++++|.+++ .+.. +..+++|+.+++++|.++... .......+... +.|+++++.+|.+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG--AQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH--HHHHHHHHhhcCCchhhcccCCCCC
Confidence 2 23789999999998873 1222 556688999999999988652 22344555556 7899999988854
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-22 Score=190.11 Aligned_cols=243 Identities=26% Similarity=0.321 Sum_probs=149.9
Q ss_pred CCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcc
Q 036656 100 FLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIH 179 (367)
Q Consensus 100 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 179 (367)
+|++++++.++++ .+|+.++.+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+. .+|.....++.|+.|++.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 4455555555554 34444455555555555555554 44444444444444444444444 333334444444444444
Q ss_pred cccccc------------------------cCCC-CCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 180 SNNLSG------------------------EIPS-SFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 180 ~n~~~~------------------------~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
.|.+.. ..|. .=..++.|+.|++.+|.++......+..+++|+.|+|++|.+...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 444331 1121 111245577778888888877777778888888888888888744
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCC
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGN 313 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~ 313 (367)
....+.++..|++|+|++|.++ .+|..+. .++.|++|...+|++. .+| .+..++.|+.+|++.|+++...-. ...
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 4455677888888888888887 7787776 5888888888888887 677 677888888888888888764333 222
Q ss_pred CCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCC
Q 036656 314 LHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININ 355 (367)
Q Consensus 314 ~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 355 (367)
.++|++||+++|.-... -...+..++++..+++.-+
T Consensus 475 ~p~LkyLdlSGN~~l~~------d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRLVF------DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CcccceeeccCCccccc------chhhhHHhhhhhheecccC
Confidence 37888888888852211 1234555666666666655
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=2.5e-22 Score=189.15 Aligned_cols=245 Identities=24% Similarity=0.367 Sum_probs=205.6
Q ss_pred CCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEE
Q 036656 97 NLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRIL 176 (367)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 176 (367)
.-++|+.|+.++|.++...+ -..-.+|++++++.+.++ .+|.++..+.+|+.++...|.++ .+|..+....+|+.|
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred cCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 45678889999998873222 233568999999999999 78899999999999999999996 677778888999999
Q ss_pred EcccccccccCCCCCCCCCCCCEEEcccCcCcccCCccc--------------------------CCCCCCCEEEeecCc
Q 036656 177 VIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATL--------------------------SELKRMRYISFGGNK 230 (367)
Q Consensus 177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l--------------------------~~~~~L~~L~l~~n~ 230 (367)
.+.+|.+. .+|+....++.|++|++..|++.. +|..+ ..++.|+.|.+.+|.
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence 99999998 788888889999999999998863 22211 123457788889999
Q ss_pred CccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC
Q 036656 231 LSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS 310 (367)
Q Consensus 231 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 310 (367)
+++.....+.+..+|+.|+|++|++. .+|......++.|++|++++|+++ .+|..+..++.|++|...+|.+. ..|.
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe 447 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPE 447 (1081)
T ss_pred ccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echh
Confidence 98877778899999999999999998 888877778999999999999999 78999999999999999999998 5668
Q ss_pred CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCe
Q 036656 311 FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININN 356 (367)
Q Consensus 311 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 356 (367)
+..++.|+.+|++.|+++... .+... ..++|++||+++|.
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~-----l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVT-----LPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhcCcceEEecccchhhhhh-----hhhhC-CCcccceeeccCCc
Confidence 999999999999999998752 22222 23899999999995
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=5.7e-19 Score=170.57 Aligned_cols=241 Identities=27% Similarity=0.287 Sum_probs=166.5
Q ss_pred EEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeC
Q 036656 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGF 156 (367)
Q Consensus 77 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~ 156 (367)
-..++++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 345677777776 4555554 36777777777776 4554 2467777777777777 45542 35677777777
Q ss_pred CCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccC
Q 036656 157 NELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIP 236 (367)
Q Consensus 157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 236 (367)
|.+. .+|.. ..+|+.|++++|.++ .+|. ..++|+.|++++|.+++ +|.. ..+|+.|++++|.++ .+|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccc
Confidence 7766 33332 245777788888776 4444 23678888888888774 3332 245777888888876 344
Q ss_pred ccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCC
Q 036656 237 FSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHK 316 (367)
Q Consensus 237 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 316 (367)
. ...+|++|++++|+++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|.+++ +|.. .++
T Consensus 339 ~---lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l--~s~ 403 (788)
T PRK15387 339 T---LPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL--PSE 403 (788)
T ss_pred c---cccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc--ccC
Confidence 3 1257889999999888 56642 467888999999988 46643 3579999999999985 4442 367
Q ss_pred CCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCCCC
Q 036656 317 LQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVGN 367 (367)
Q Consensus 317 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~~~ 367 (367)
|+.|++++|++++. |. . ..+|+.|++++|+++ .+|++|++
T Consensus 404 L~~LdLS~N~LssI-P~------l---~~~L~~L~Ls~NqLt-~LP~sl~~ 443 (788)
T PRK15387 404 LKELMVSGNRLTSL-PM------L---PSGLLSLSVYRNQLT-RLPESLIH 443 (788)
T ss_pred CCEEEccCCcCCCC-Cc------c---hhhhhhhhhccCccc-ccChHHhh
Confidence 99999999999863 32 1 236788999999998 89988763
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=7.6e-21 Score=170.81 Aligned_cols=255 Identities=23% Similarity=0.287 Sum_probs=189.1
Q ss_pred EEEccCCCCC-CCcchhhcCCCCCcEEEccCCCCCC----CcCccccCCCCCCEEEeeCCCCCC------CCCCcCCCCC
Q 036656 103 VLSLKNNSFR-NEIPRAIGYLFRLRILRLDNNTFGG----QIPDNISHCIKLESLRLGFNELEG------KVPGKLGSLP 171 (367)
Q Consensus 103 ~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~l~~----~~p~~~~~l~~L~~L~l~~n~~~~------~~~~~l~~l~ 171 (367)
.|+|..+.++ ......+..+++|+.|+++++.++. .++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4678888887 3466667788889999999999853 355667778889999999988762 1234466788
Q ss_pred CCcEEEcccccccccCCCCCCCC---CCCCEEEcccCcCcc----cCCcccCCC-CCCCEEEeecCcCccc----cCccc
Q 036656 172 KLRILVIHSNNLSGEIPSSFGNL---SSLQVLSASANQFVG----QIPATLSEL-KRMRYISFGGNKLSGE----IPFSI 239 (367)
Q Consensus 172 ~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~----~~~~~l~~~-~~L~~L~l~~n~~~~~----~~~~l 239 (367)
+|++|++++|.+....+..+..+ ++|++|++++|.+++ .+...+..+ ++|++|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 99999999998875444444444 449999999999873 223345666 8999999999999842 34456
Q ss_pred cCCCCCCEEECCCCcCcccCC----hhhhcCCCCCCEEEeecCcCccc----cchhhhCCCCCCeEeccCccCcccCC-C
Q 036656 240 YNLSTLSDFHFPFNQLRGSLP----SDLGFTLPNLEVLNLGANQFTGP----IPASISNASNLMRLGIPMNGFRGKVP-S 310 (367)
Q Consensus 240 ~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~-~ 310 (367)
..+++|++|++++|.+++... ..+. ..++|++|++++|.+.+. +...+..+++|++|++++|.+++... .
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 677899999999999985322 2222 457999999999998744 33445678899999999999886222 1
Q ss_pred C-----CCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeee
Q 036656 311 F-----GNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGM 360 (367)
Q Consensus 311 ~-----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~ 360 (367)
+ ...+.|+.|++++|.++... ...+...+..+++|+.+++++|.++..
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDG--AKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHH--HHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 1 13489999999999988431 112456677789999999999998843
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=1.8e-20 Score=161.32 Aligned_cols=253 Identities=23% Similarity=0.247 Sum_probs=196.3
Q ss_pred CCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeC-CCCCCCCCCcCCCCCCCcEEEc
Q 036656 100 FLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGF-NELEGKVPGKLGSLPKLRILVI 178 (367)
Q Consensus 100 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l 178 (367)
..++++|..|+|+..-+.+|+.+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+......|..+.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567899999999977778999999999999999999989999999999998887776 8899655567999999999999
Q ss_pred ccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCc------------cccCccccCCC---
Q 036656 179 HSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLS------------GEIPFSIYNLS--- 243 (367)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~------------~~~~~~l~~~~--- 243 (367)
.-|.+.-...+.+..+++|..|.+.+|.+.......+..+..++.+.+..|.+. ...|..++...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999888666678899999999999999987444457888899999999888731 11111111111
Q ss_pred -------------------CCCEE--EC-CCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccC
Q 036656 244 -------------------TLSDF--HF-PFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPM 301 (367)
Q Consensus 244 -------------------~L~~L--~l-~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 301 (367)
.++.+ .+ +.+...+..|..-+..+++|++|++++|++++.-+.+|.....+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 11111 11 122233355665566789999999999999888888888888999999999
Q ss_pred ccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeee
Q 036656 302 NGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 302 n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
|++...-.. |.++..|+.|+|.+|+|+.. -+.+|....+|.+|++-.|.+.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~------~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTV------APGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEE------ecccccccceeeeeehccCccc
Confidence 988754444 88888999999999999887 4456667788888888887653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=3.4e-20 Score=142.30 Aligned_cols=82 Identities=35% Similarity=0.568 Sum_probs=35.1
Q ss_pred CCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEE
Q 036656 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILV 177 (367)
Q Consensus 98 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 177 (367)
+..++.|.+++|+++ .+|..+..+++|+.|++.+|+++ .+|.+++.+++|+.|++.-|++. ..|..|+.+|.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 334444444444444 33333444444444444444444 44444444444444444444333 3344444444444444
Q ss_pred ccccc
Q 036656 178 IHSNN 182 (367)
Q Consensus 178 l~~n~ 182 (367)
+..|.
T Consensus 109 ltynn 113 (264)
T KOG0617|consen 109 LTYNN 113 (264)
T ss_pred ccccc
Confidence 44333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=8.4e-20 Score=140.16 Aligned_cols=162 Identities=31% Similarity=0.526 Sum_probs=89.3
Q ss_pred CCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEE
Q 036656 121 YLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVL 200 (367)
Q Consensus 121 ~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 200 (367)
++..++.|.+++|+++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|++|+++-|++. ..|..|++++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3445555666666666 55555666666666666666655 45555566666666666655554 455555555555555
Q ss_pred EcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcC
Q 036656 201 SASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQF 280 (367)
Q Consensus 201 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 280 (367)
|+.+|++.. ..+|..|..+..|+.|++++|.+. .+|..+. .+.+|+.|.+..|.+
T Consensus 108 dltynnl~e-----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg-~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 108 DLTYNNLNE-----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG-KLTNLQILSLRDNDL 162 (264)
T ss_pred hcccccccc-----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-hhcceeEEeeccCch
Confidence 555555432 123444444445555555555554 4555554 455555555555555
Q ss_pred ccccchhhhCCCCCCeEeccCccCcccCCCC
Q 036656 281 TGPIPASISNASNLMRLGIPMNGFRGKVPSF 311 (367)
Q Consensus 281 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 311 (367)
- .+|..++.+..|++|++.+|+++...|.+
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 4 45555555555555666555555444433
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.60 E-value=1.1e-14 Score=141.01 Aligned_cols=150 Identities=30% Similarity=0.483 Sum_probs=119.1
Q ss_pred CCCCHHhHHHHHHHHHhCCCCCCCCCCCCCCCCCCC-----CccceEecCCC----CcEEEEEcCCCCcccccCccccCC
Q 036656 28 LKSNETDQLALLEFKAKITYDPLEVLSSWNYSRHFC-----QWKGVTCSPRH----QRVTALLLPSLLLQGSLSPHIGNL 98 (367)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~c~~~~----~~v~~l~l~~~~~~~~~~~~~~~l 98 (367)
..+.+.|..+|.+++..+. .+. ..+|.. +.| .|.|+.|.... ..++.|+|+++.+.|.+|..+..+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~--~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L 441 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPL--RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL 441 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Ccc--cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence 3456679999999999886 332 137864 344 79999996321 258889999999999888888899
Q ss_pred CCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCC-CCCcEEE
Q 036656 99 SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSL-PKLRILV 177 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~ 177 (367)
++|+.|+|++|.+++.+|..+..+++|+.|++++|.+++.+|..++++++|++|++++|.+++.+|..+... .++..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 999999999999988888888889999999999999888888888888888888888888888888776543 3455666
Q ss_pred ccccc
Q 036656 178 IHSNN 182 (367)
Q Consensus 178 l~~n~ 182 (367)
+.+|.
T Consensus 522 ~~~N~ 526 (623)
T PLN03150 522 FTDNA 526 (623)
T ss_pred ecCCc
Confidence 66664
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=1.2e-12 Score=121.12 Aligned_cols=197 Identities=31% Similarity=0.448 Sum_probs=120.2
Q ss_pred EEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCC-CCcEEEcccccccccCCCCCCCCCCCCEEEcccC
Q 036656 127 ILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLP-KLRILVIHSNNLSGEIPSSFGNLSSLQVLSASAN 205 (367)
Q Consensus 127 ~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 205 (367)
.++...+.+. .....+..+..++.|++.+|.++ .++....... +|+.|++++|.+. .++..++.+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5666666654 22233444566777777777776 4455555553 7777777777766 44455666777777777777
Q ss_pred cCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccc
Q 036656 206 QFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIP 285 (367)
Q Consensus 206 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 285 (367)
.++ .++......+.|+.|++++|++. .+|........|+++.+++|... ..+..+. .+.++..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceee-ecc
Confidence 776 33333335667777777777776 44544444555777777776433 3344443 4666666666666665 334
Q ss_pred hhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCC
Q 036656 286 ASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEK 332 (367)
Q Consensus 286 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 332 (367)
..+..+++++.|++++|.++.... ++...+++.|++++|.++...+
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 555666667777777776663333 6666777777777776665533
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=1e-14 Score=131.64 Aligned_cols=195 Identities=26% Similarity=0.393 Sum_probs=159.3
Q ss_pred CCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEee
Q 036656 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFG 227 (367)
Q Consensus 148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 227 (367)
--...+++.|++. .+|..+..+..|+.+.+.+|.+. .+|..++++..|++++++.|+++ .+|..+..+ -|+.|-++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEe
Confidence 3456788999988 67888888888999999999887 78999999999999999999997 566666654 58999999
Q ss_pred cCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCccc
Q 036656 228 GNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGK 307 (367)
Q Consensus 228 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 307 (367)
+|+++ .+|..++...+|.+|+.+.|++. .+|..+. .+.+|+.|.+..|++. .+|.++..++ |..||++.|++. .
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~ 225 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-Y 225 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-e
Confidence 99998 78888888899999999999998 7888887 6999999999999998 7888888775 999999999998 5
Q ss_pred CCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCe
Q 036656 308 VPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININN 356 (367)
Q Consensus 308 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 356 (367)
+|. |.+|..|++|.|.+|++... |...+. -....-.++|+..-++
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~---kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSP-PAQICE---KGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCC-hHHHHh---ccceeeeeeecchhcc
Confidence 555 99999999999999999875 322211 1122234566666553
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5.9e-14 Score=123.04 Aligned_cols=209 Identities=24% Similarity=0.245 Sum_probs=136.5
Q ss_pred cCCCCCcEEEccCCCCCCCcC--ccccCCCCCCEEEeeCCCCCCCCC--CcCCCCCCCcEEEcccccccccCCCC-CCCC
Q 036656 120 GYLFRLRILRLDNNTFGGQIP--DNISHCIKLESLRLGFNELEGKVP--GKLGSLPKLRILVIHSNNLSGEIPSS-FGNL 194 (367)
Q Consensus 120 ~~l~~L~~L~l~~~~l~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l 194 (367)
+++++|+.+.++++.+. ..+ .....+++++.|+|+.|-+....+ .....+|+|+.|+++.|.+....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46778888888887776 333 355677888888888887764322 33467888888888888775322211 1246
Q ss_pred CCCCEEEcccCcCcccC-CcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCC--hhhhcCCCCCC
Q 036656 195 SSLQVLSASANQFVGQI-PATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLP--SDLGFTLPNLE 271 (367)
Q Consensus 195 ~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~ 271 (367)
+.|+.|.++.|.++... ...+..+|+|+.|++..|............+..|++|+|++|++- .++ .... .++.|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~-~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG-TLPGLN 274 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc-cccchh
Confidence 77888888888776322 233456788888888888532222333445677888888888776 333 2333 578888
Q ss_pred EEEeecCcCccc-cchh-----hhCCCCCCeEeccCccCccc--CCCCCCCCCCCEEEccCCcCCCcC
Q 036656 272 VLNLGANQFTGP-IPAS-----ISNASNLMRLGIPMNGFRGK--VPSFGNLHKLQRVIISMNHLGNGE 331 (367)
Q Consensus 272 ~L~l~~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~ 331 (367)
.|+++.+.+.+. .|+. ....++|+.|++..|++... ...+..+++|+.|.+..|.++.+.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 888888877633 1222 24567888888888888632 222566777888888888877653
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=2.6e-12 Score=118.80 Aligned_cols=198 Identities=32% Similarity=0.489 Sum_probs=154.9
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCC-CCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccc
Q 036656 103 VLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCI-KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSN 181 (367)
Q Consensus 103 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (367)
.+++..+.+.. ....+..++.++.|++.++.++ .+|....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 57777777642 2334566788999999999998 7777676664 8999999999988 45567788999999999999
Q ss_pred cccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCCh
Q 036656 182 NLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPS 261 (367)
Q Consensus 182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 261 (367)
.+. .++...+..++|+.|++++|.+. .+|........|+++.+++|... ..+..+..+..+..+.+.+|++. .++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 988 55655557789999999999987 55655556667999999999644 45667788888888888888876 3345
Q ss_pred hhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC
Q 036656 262 DLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS 310 (367)
Q Consensus 262 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 310 (367)
.+. .++++++|++++|.++ .++. +....+++.|++++|.+....+.
T Consensus 250 ~~~-~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIG-NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhc-cccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 554 5788999999999998 4444 78889999999999998876665
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=3e-13 Score=115.56 Aligned_cols=242 Identities=21% Similarity=0.257 Sum_probs=117.2
Q ss_pred CcEEEEEcCCCCcccc----cCccccCCCCCcEEEccCC---CCCCCcchh-------hcCCCCCcEEEccCCCCCCCcC
Q 036656 75 QRVTALLLPSLLLQGS----LSPHIGNLSFLRVLSLKNN---SFRNEIPRA-------IGYLFRLRILRLDNNTFGGQIP 140 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~---~l~~~~~~~-------l~~l~~L~~L~l~~~~l~~~~p 140 (367)
..++.|++++|.+... +...+.+.++|+..++++- +....+|+. +-.+++|++|+||+|.+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4678888888877643 3345566677777777653 222234433 3355677777777776653333
Q ss_pred c----cccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCccc----CC
Q 036656 141 D----NISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQ----IP 212 (367)
Q Consensus 141 ~----~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~----~~ 212 (367)
. .+.++..|++|.|.+|.+....-..++. .|.+|. .+ .-..+-++|+.+....|++... +.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccHHHHH
Confidence 2 2345666777777776654111011100 011110 00 0112224455555555544321 11
Q ss_pred cccCCCCCCCEEEeecCcCccc----cCccccCCCCCCEEECCCCcCcccCChhh---hcCCCCCCEEEeecCcCccccc
Q 036656 213 ATLSELKRMRYISFGGNKLSGE----IPFSIYNLSTLSDFHFPFNQLRGSLPSDL---GFTLPNLEVLNLGANQFTGPIP 285 (367)
Q Consensus 213 ~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~ 285 (367)
..+...+.|+.+.+..|.+... +...+..+++|+.|||.+|-++......+ ...+++|+++++++|.+...-.
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 2234445555555555555311 12334455566666666665542111111 1134556666666665543322
Q ss_pred hh----h-hCCCCCCeEeccCccCccc----CCC-CCCCCCCCEEEccCCcC
Q 036656 286 AS----I-SNASNLMRLGIPMNGFRGK----VPS-FGNLHKLQRVIISMNHL 327 (367)
Q Consensus 286 ~~----l-~~l~~L~~L~l~~n~~~~~----~~~-~~~~~~L~~L~l~~n~l 327 (367)
.. + ...|+|+.|.+.+|.++.. +.. ....+.|+.|+|++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11 1 2345666666666666531 111 34456666666666666
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.2e-13 Score=124.96 Aligned_cols=195 Identities=29% Similarity=0.462 Sum_probs=139.0
Q ss_pred CCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEE
Q 036656 98 LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILV 177 (367)
Q Consensus 98 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 177 (367)
+..-...+++.|++. .+|..+..+..|+.+.++.|.+. .+|..++++..|.+++++.|++. .+|..+..++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 444455677777776 67777777777888888888777 77777888888888888888777 5666666666 77778
Q ss_pred cccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcc
Q 036656 178 IHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257 (367)
Q Consensus 178 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 257 (367)
+++|+++ .+|+.++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..++ |..||+++|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-
Confidence 8888776 67777777777888888888776 56667777778888888877776 5566666443 677888888877
Q ss_pred cCChhhhcCCCCCCEEEeecCcCccccchhhh---CCCCCCeEeccCcc
Q 036656 258 SLPSDLGFTLPNLEVLNLGANQFTGPIPASIS---NASNLMRLGIPMNG 303 (367)
Q Consensus 258 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~ 303 (367)
.+|-.+. .+..|++|-|.+|.+. ..|..+. ...-.++|+..-++
T Consensus 225 ~iPv~fr-~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFR-KMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhh-hhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 7777665 5778888888888877 4444442 23344566666553
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=3.4e-13 Score=115.19 Aligned_cols=253 Identities=23% Similarity=0.306 Sum_probs=171.3
Q ss_pred CccccCCCCCcEEEccCCCCCCC----cchhhcCCCCCcEEEccCC---CCCCCcCcc-------ccCCCCCCEEEeeCC
Q 036656 92 SPHIGNLSFLRVLSLKNNSFRNE----IPRAIGYLFRLRILRLDNN---TFGGQIPDN-------ISHCIKLESLRLGFN 157 (367)
Q Consensus 92 ~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~---~l~~~~p~~-------~~~l~~L~~L~l~~n 157 (367)
.+.+..+..++.++|++|.+... +...+.+.++|+..++++- +....+|.. +..+++|++|+||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 34456778889999999988643 4556677888888888763 222244433 345668888888888
Q ss_pred CCCCCCCCcC----CCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcc
Q 036656 158 ELEGKVPGKL----GSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG 233 (367)
Q Consensus 158 ~~~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 233 (367)
.+....+..| .++..|++|.+.+|.+...--..++ ..|..+. .+ ....+-++|+.+..++|++..
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--VN-------KKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--HH-------hccCCCcceEEEEeecccccc
Confidence 8774444332 4566777777777766521111111 1122222 11 223456899999999999863
Q ss_pred c----cCccccCCCCCCEEECCCCcCcccCC----hhhhcCCCCCCEEEeecCcCccc----cchhhhCCCCCCeEeccC
Q 036656 234 E----IPFSIYNLSTLSDFHFPFNQLRGSLP----SDLGFTLPNLEVLNLGANQFTGP----IPASISNASNLMRLGIPM 301 (367)
Q Consensus 234 ~----~~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~ 301 (367)
. +...+...+.|+.+.++.|.+..... ..+. .+++|++||+.+|-|+.. +...++.++.|+.|++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2 23456677899999999998762211 2233 689999999999998733 345567788999999999
Q ss_pred ccCcccCCC------CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeee
Q 036656 302 NGFRGKVPS------FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 302 n~~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
|.+...-.. -...|.|+.|.+.+|.++..- .......+...+.|+.|+|++|.+.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da--~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA--ALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHH--HHHHHHHHhcchhhHHhcCCccccc
Confidence 998753221 235799999999999988651 1223345667899999999999883
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.26 E-value=1.6e-12 Score=109.07 Aligned_cols=222 Identities=18% Similarity=0.181 Sum_probs=141.5
Q ss_pred CCCCcEEEccCCC-------C-CCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCC
Q 036656 98 LSFLRVLSLKNNS-------F-RNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGS 169 (367)
Q Consensus 98 l~~L~~L~l~~~~-------l-~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 169 (367)
+.+|..|..++.. + ...+|-.+.-+++|+.+.++.+.-. .+.+-...-|.|+++.+.+..++. .|. +-.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~~-l~p 257 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VPS-LLP 257 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-ccc-ccc
Confidence 4566677666531 1 1123333445677778888777544 222222233678888877655542 121 111
Q ss_pred CCCCcEEEcccc---cccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCC
Q 036656 170 LPKLRILVIHSN---NLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLS 246 (367)
Q Consensus 170 l~~L~~L~l~~n---~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 246 (367)
...+ -+...- ...|.........+.|+++|+++|.++ .+..+..-.|+++.|++++|.+... ..++.+++|+
T Consensus 258 e~~~--~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~ 332 (490)
T KOG1259|consen 258 ETIL--ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQ 332 (490)
T ss_pred hhhh--cCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccce
Confidence 1111 121111 111222222333467888999999887 5556677788999999999988732 3478888999
Q ss_pred EEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCccc--CCCCCCCCCCCEEEccC
Q 036656 247 DFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGK--VPSFGNLHKLQRVIISM 324 (367)
Q Consensus 247 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~ 324 (367)
.||+++|.++ .+..+-. .+-+.++|.+++|.+. . ...+..+-+|..||+++|+|... ...++++|.|+.+.|.+
T Consensus 333 ~LDLS~N~Ls-~~~Gwh~-KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 333 LLDLSGNLLA-ECVGWHL-KLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred EeecccchhH-hhhhhHh-hhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 9999999887 4444433 5788999999999876 2 23467777889999999988753 33488999999999999
Q ss_pred CcCCCcC
Q 036656 325 NHLGNGE 331 (367)
Q Consensus 325 n~l~~~~ 331 (367)
|++.+.+
T Consensus 409 NPl~~~v 415 (490)
T KOG1259|consen 409 NPLAGSV 415 (490)
T ss_pred CCccccc
Confidence 9988763
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=1.4e-11 Score=98.59 Aligned_cols=126 Identities=23% Similarity=0.332 Sum_probs=38.8
Q ss_pred CCCCCEEEeecCcCccccCcccc-CCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhh-hCCCCCC
Q 036656 218 LKRMRYISFGGNKLSGEIPFSIY-NLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASI-SNASNLM 295 (367)
Q Consensus 218 ~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 295 (367)
..++++|++.+|.++. + ..+. .+.+|+.|++++|.++ .+.. +. .+++|++|++++|+++ .+...+ ..+|+|+
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~-l~-~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG-LP-GLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC-cc-ChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 3455666666666652 2 2233 3556666666666665 3332 22 3666777777777666 333233 3466677
Q ss_pred eEeccCccCccc--CCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeC
Q 036656 296 RLGIPMNGFRGK--VPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQI 352 (367)
Q Consensus 296 ~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l 352 (367)
+|++++|++... +..+..+++|+.|++.+|+++.. ..+ -...+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~--~~Y-R~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK--KNY-RLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS--TTH-HHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch--hhH-HHHHHHHcChhheeCC
Confidence 777777766542 22255667777777777776643 111 2234556677776653
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=2.6e-12 Score=107.82 Aligned_cols=209 Identities=22% Similarity=0.216 Sum_probs=141.6
Q ss_pred cCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeC-CCCCCCCCCcCCC
Q 036656 91 LSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGF-NELEGKVPGKLGS 169 (367)
Q Consensus 91 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~ 169 (367)
+|-.+..+++|..+.++.+.-. .+-+--..-|.|+++......+. ..|. +--...+....... ....|.....+.-
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-cccc-ccchhhhcCccCCCCCccCCceEEecch
Confidence 4445667788888888887543 22222234578888888776654 2222 11112222221111 1122333333445
Q ss_pred CCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEE
Q 036656 170 LPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFH 249 (367)
Q Consensus 170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 249 (367)
...|+.+++++|.++ .+.+...-.|+++.|+++.|.+... ..+..+++|+.||+++|.++ .+..+-..+.+.++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 577999999999988 6777777789999999999998743 44788899999999999887 4444555677889999
Q ss_pred CCCCcCcccCChhhhcCCCCCCEEEeecCcCccc-cchhhhCCCCCCeEeccCccCcccCC
Q 036656 250 FPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGP-IPASISNASNLMRLGIPMNGFRGKVP 309 (367)
Q Consensus 250 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~ 309 (367)
+++|.+. .+ ..+. .+-+|..||+++|++... -...++++|.|+.+.+.+|.+.+...
T Consensus 359 La~N~iE-~L-SGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIE-TL-SGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHh-hh-hhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9999875 22 2333 577899999999998632 23457889999999999999886543
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.5e-12 Score=114.40 Aligned_cols=211 Identities=24% Similarity=0.244 Sum_probs=145.4
Q ss_pred cCCCCCcEEEccCCCCCCCcc-hhhcCCCCCcEEEccCCCCCCC--cCccccCCCCCCEEEeeCCCCCCCCCC-cCCCCC
Q 036656 96 GNLSFLRVLSLKNNSFRNEIP-RAIGYLFRLRILRLDNNTFGGQ--IPDNISHCIKLESLRLGFNELEGKVPG-KLGSLP 171 (367)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~p~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~ 171 (367)
.++.+|+++.|.++.+..... .....+++++.||++.|-+... +-.-...+++|+.|+++.|++...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467889999999887763211 3567799999999999876532 223345688999999999988632221 123568
Q ss_pred CCcEEEccccccccc-CCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcccc-CccccCCCCCCEEE
Q 036656 172 KLRILVIHSNNLSGE-IPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEI-PFSIYNLSTLSDFH 249 (367)
Q Consensus 172 ~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~ 249 (367)
.|+.|.++.|.++.. +...+..+|+|+.|++..|...........-+..|++|+|++|++.... -.....++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 899999999988743 2233456799999999988533233333455678999999999886322 14466788899999
Q ss_pred CCCCcCccc-CChh----hhcCCCCCCEEEeecCcCccc-cchhhhCCCCCCeEeccCccCcc
Q 036656 250 FPFNQLRGS-LPSD----LGFTLPNLEVLNLGANQFTGP-IPASISNASNLMRLGIPMNGFRG 306 (367)
Q Consensus 250 l~~n~~~~~-~~~~----~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~ 306 (367)
++.+.+... +|+. ....+++|++|++..|++.+. ....+..+++|+.|.+..|.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 998887632 1221 123689999999999998521 22345667888888888887764
No 35
>PLN03150 hypothetical protein; Provisional
Probab=99.16 E-value=8e-11 Score=114.22 Aligned_cols=109 Identities=34% Similarity=0.551 Sum_probs=88.3
Q ss_pred CCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcc
Q 036656 124 RLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSAS 203 (367)
Q Consensus 124 ~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 203 (367)
.++.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+++.+|+.++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCcCcccCCcccCCC-CCCCEEEeecCcCc
Q 036656 204 ANQFVGQIPATLSEL-KRMRYISFGGNKLS 232 (367)
Q Consensus 204 ~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~ 232 (367)
+|.+++.+|..+... .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 888888888776653 46677888877654
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=3.2e-11 Score=96.53 Aligned_cols=124 Identities=21% Similarity=0.252 Sum_probs=37.5
Q ss_pred CCCCCEEEcccCcCcccCCcccC-CCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCE
Q 036656 194 LSSLQVLSASANQFVGQIPATLS-ELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEV 272 (367)
Q Consensus 194 l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 272 (367)
..++++|++.+|.++.. ..++ .+.+|+.|++++|.++. + ..+..++.|++|++++|.++ .+...+...+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 34455555655555421 2233 34556666666666652 2 23445666666666666665 344333223666777
Q ss_pred EEeecCcCccc-cchhhhCCCCCCeEeccCccCcccCCC----CCCCCCCCEEEc
Q 036656 273 LNLGANQFTGP-IPASISNASNLMRLGIPMNGFRGKVPS----FGNLHKLQRVII 322 (367)
Q Consensus 273 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~L~l 322 (367)
|++++|++.+. .-..+..+++|+.|++.+|.++..... +..+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777766521 123345667777777777776643221 445677776654
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=1.7e-10 Score=114.61 Aligned_cols=105 Identities=30% Similarity=0.433 Sum_probs=75.0
Q ss_pred cEEEEEcCCCC--cccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEE
Q 036656 76 RVTALLLPSLL--LQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLR 153 (367)
Q Consensus 76 ~v~~l~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~ 153 (367)
.++.+-+..+. +.......|..++.|++|||++|.--+.+|..++++-+|++|+++++.+. .+|..+.+++.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555554 22222333667888888888877665678888888888888888888887 7888888888888888
Q ss_pred eeCCCCCCCCCCcCCCCCCCcEEEcccc
Q 036656 154 LGFNELEGKVPGKLGSLPKLRILVIHSN 181 (367)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (367)
+..+......|.....+++|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 8877655455666666888888887654
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.00 E-value=2.9e-11 Score=112.16 Aligned_cols=250 Identities=26% Similarity=0.306 Sum_probs=143.3
Q ss_pred CCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEE
Q 036656 97 NLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRIL 176 (367)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 176 (367)
.+..++.+.++.|.+. .+-..+..+++|+.+++.+|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 4555666667777766 23344667778888888888877 3333366677888888888887743 234556668888
Q ss_pred EcccccccccCCCCCCCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcC
Q 036656 177 VIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP-ATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQL 255 (367)
Q Consensus 177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 255 (367)
++++|.+.. + ..+..++.|+.+++++|.++..-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 888887762 2 334557778888888887764433 1 46667777778887776522 2222333333445666655
Q ss_pred cccCChhhhcCCCC--CCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCC
Q 036656 256 RGSLPSDLGFTLPN--LEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKD 333 (367)
Q Consensus 256 ~~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 333 (367)
+ .+-... .+.. |+.+++++|++. ..+..+..+..+..+++.+|.+.. ...+...+.+..+....|.+......
T Consensus 221 ~-~~~~l~--~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 S-KLEGLN--ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN-LEGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred e-eccCcc--cchhHHHHHHhcccCccc-cccccccccccccccchhhccccc-cccccccchHHHhccCcchhcchhhh
Confidence 5 111110 1222 667777777766 333445556667777777666552 22233445555555555555432100
Q ss_pred chhhhhhhcCCCCCCEEeCcCCeeeeeCC
Q 036656 334 DLEFVNSLVNASRLELLQININNFGGMLP 362 (367)
Q Consensus 334 ~~~~~~~l~~~~~L~~L~l~~n~l~g~iP 362 (367)
.........+.++.+.+.+|.+....+
T Consensus 296 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 296 --SQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred --hccccccccccccccccccCccccccc
Confidence 000113445566666666665554443
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=3.5e-10 Score=112.44 Aligned_cols=231 Identities=21% Similarity=0.229 Sum_probs=136.2
Q ss_pred CCCCCcEEEccCCC--CCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCc
Q 036656 97 NLSFLRVLSLKNNS--FRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLR 174 (367)
Q Consensus 97 ~l~~L~~L~l~~~~--l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (367)
..+.|++|-+.+|. +.....+.|..+|.|+.||+++|.--+.+|..++.+-+|++|+++++.+. .+|..+.++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 34468888888875 44334455778999999999988666689999999999999999998888 7888999999999
Q ss_pred EEEcccccccccCCCCCCCCCCCCEEEcccCcCc--ccCCcccCCCCCCCEEEeecCcC---------------------
Q 036656 175 ILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFV--GQIPATLSELKRMRYISFGGNKL--------------------- 231 (367)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~~--------------------- 231 (367)
+|++..+.....++.....+.+|++|.+...... ...-..+..+.+|+.+.......
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence 9999887765555666666899999988655421 12222334444555444433221
Q ss_pred ----ccccCccccCCCCCCEEECCCCcCcccCChhh----hcC-CCCCCEEEeecCcCccccchhhhCCCCCCeEeccCc
Q 036656 232 ----SGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDL----GFT-LPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMN 302 (367)
Q Consensus 232 ----~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----~~~-~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 302 (367)
....+..+..+.+|+.|.+.++.......... ... ++++..+...++... ..+.+....++|+.|.+..+
T Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecc
Confidence 00122333445555556555555431111000 000 122222222232222 12233344567777777777
Q ss_pred cCcccCCC-CCCCCCCCEEEccCCcCCC
Q 036656 303 GFRGKVPS-FGNLHKLQRVIISMNHLGN 329 (367)
Q Consensus 303 ~~~~~~~~-~~~~~~L~~L~l~~n~l~~ 329 (367)
...+.+.+ ...+..+..+-+..+.+.+
T Consensus 781 ~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 781 RLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred cccccCCCHHHHhhhcccEEeccccccc
Confidence 65554444 5555555555555554444
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-10 Score=107.86 Aligned_cols=218 Identities=24% Similarity=0.272 Sum_probs=149.3
Q ss_pred cCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCE
Q 036656 120 GYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQV 199 (367)
Q Consensus 120 ~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 199 (367)
..+..++.+.++.|.+. .+-..+..+.+|+.|++.+|.+... ...+..+++|++|++++|.++.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 45566777778888877 3334467788999999999998843 33366788999999999988743 33566777999
Q ss_pred EEcccCcCcccCCcccCCCCCCCEEEeecCcCccccC-ccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecC
Q 036656 200 LSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIP-FSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGAN 278 (367)
Q Consensus 200 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 278 (367)
|++.+|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.. +.. +. .+..+..+++..|
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~~-~~-~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-IEG-LD-LLKKLVLLSLLDN 218 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-ccc-hH-HHHHHHHhhcccc
Confidence 99999988743 345568889999999998874433 2 4677888888899888762 222 11 2455666688888
Q ss_pred cCccccchhhhCCCC--CCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCe
Q 036656 279 QFTGPIPASISNASN--LMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININN 356 (367)
Q Consensus 279 ~l~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 356 (367)
.++..-+ +..+.. |+.+.+++|.+......+..+..+..+++.+|++... ..+...+.+..+....|.
T Consensus 219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--------~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 219 KISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--------EGLERLPKLSELWLNDNK 288 (414)
T ss_pred cceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--------ccccccchHHHhccCcch
Confidence 8773222 222333 8899999998874434477788888899998887765 223334444455555554
Q ss_pred e
Q 036656 357 F 357 (367)
Q Consensus 357 l 357 (367)
+
T Consensus 289 ~ 289 (414)
T KOG0531|consen 289 L 289 (414)
T ss_pred h
Confidence 3
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2.6e-09 Score=70.39 Aligned_cols=58 Identities=38% Similarity=0.495 Sum_probs=23.7
Q ss_pred CCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCc
Q 036656 269 NLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNH 326 (367)
Q Consensus 269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~ 326 (367)
+|++|++++|+++...+..+..+++|++|++++|.++...+. |..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 344444444444422223334444444444444444433333 4444444444444443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=3.9e-09 Score=69.51 Aligned_cols=57 Identities=37% Similarity=0.510 Sum_probs=22.6
Q ss_pred CcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccc
Q 036656 125 LRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSN 181 (367)
Q Consensus 125 L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (367)
|++|++++|++....+..|.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444443222233344444444444444444333333444444444444443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.6e-10 Score=95.03 Aligned_cols=177 Identities=19% Similarity=0.127 Sum_probs=115.4
Q ss_pred CCCEEEeeCCCCCCC-CCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCc-CcccC-CcccCCCCCCCEE
Q 036656 148 KLESLRLGFNELEGK-VPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQ-FVGQI-PATLSELKRMRYI 224 (367)
Q Consensus 148 ~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~-~~~l~~~~~L~~L 224 (367)
.||++||+...++.. .-..+..+.+|+.|.+.++++.+.+...+.+-.+|+.++++.+. ++... .-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 578888887666522 22335677788888888888776666677777888888887653 33211 1235677888888
Q ss_pred EeecCcCccccCcc-c-cCCCCCCEEECCCCcCc--ccCChhhhcCCCCCCEEEeecC-cCccccchhhhCCCCCCeEec
Q 036656 225 SFGGNKLSGEIPFS-I-YNLSTLSDFHFPFNQLR--GSLPSDLGFTLPNLEVLNLGAN-QFTGPIPASISNASNLMRLGI 299 (367)
Q Consensus 225 ~l~~n~~~~~~~~~-l-~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l 299 (367)
++++|......... + .--++|+.|+++|+.-. ..-...+...+++|.+|||++| .++......+..++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888765332111 1 12357788888876322 1222233446888999999876 445444556677888999988
Q ss_pred cCccCcccCCC----CCCCCCCCEEEccCCc
Q 036656 300 PMNGFRGKVPS----FGNLHKLQRVIISMNH 326 (367)
Q Consensus 300 ~~n~~~~~~~~----~~~~~~L~~L~l~~n~ 326 (367)
+.|.. .+|. +...|+|.+||+.+.-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 88764 3333 6788889999888763
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.63 E-value=8.2e-09 Score=85.87 Aligned_cols=86 Identities=27% Similarity=0.370 Sum_probs=58.2
Q ss_pred CcEEEEEcCCCCcccc----cCccccCCCCCcEEEccCCCC---CCCcc-------hhhcCCCCCcEEEccCCCCCCCcC
Q 036656 75 QRVTALLLPSLLLQGS----LSPHIGNLSFLRVLSLKNNSF---RNEIP-------RAIGYLFRLRILRLDNNTFGGQIP 140 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l---~~~~~-------~~l~~l~~L~~L~l~~~~l~~~~p 140 (367)
..+++++||+|.+... +...+++-++|+..++++-.. ...++ .++.++|+|+..++++|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4688899999988754 334566777888888776422 12232 345578888888888887765555
Q ss_pred c----cccCCCCCCEEEeeCCCCC
Q 036656 141 D----NISHCIKLESLRLGFNELE 160 (367)
Q Consensus 141 ~----~~~~l~~L~~L~l~~n~~~ 160 (367)
. .+++-..|++|.+++|.+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC
Confidence 4 3455677888888887665
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=3.5e-09 Score=89.13 Aligned_cols=234 Identities=18% Similarity=0.190 Sum_probs=101.2
Q ss_pred CCCCCcEEEccCCCCCCCc-chhh-cCCCCCcEEEccCCCCCC--CcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCC
Q 036656 97 NLSFLRVLSLKNNSFRNEI-PRAI-GYLFRLRILRLDNNTFGG--QIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPK 172 (367)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~~-~~~l-~~l~~L~~L~l~~~~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 172 (367)
....++.+.+.++.+...- ...| .....++.+|+.+|.++. .+..-+.++|.|++|+++.|.+...+...-....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 3344445555555554210 1112 235566677777776652 22233456666666666666665322211124455
Q ss_pred CcEEEccccccccc-CCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECC
Q 036656 173 LRILVIHSNNLSGE-IPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFP 251 (367)
Q Consensus 173 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 251 (367)
|+.|.+.+..+... ....+..+|.++.|+++.|++.. +++..+.+.. --+.+.+|++-
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq--------------~n~Dd~c~e~-------~s~~v~tlh~~ 181 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ--------------LNLDDNCIED-------WSTEVLTLHQL 181 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh--------------hccccccccc-------cchhhhhhhcC
Confidence 66666655544322 11223444555555555553321 0111111100 01133333333
Q ss_pred CCcCcccCC-hhhhcCCCCCCEEEeecCcCcccc-chhhhCCCCCCeEeccCccCcccC--CCCCCCCCCCEEEccCCcC
Q 036656 252 FNQLRGSLP-SDLGFTLPNLEVLNLGANQFTGPI-PASISNASNLMRLGIPMNGFRGKV--PSFGNLHKLQRVIISMNHL 327 (367)
Q Consensus 252 ~n~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~l 327 (367)
.|...-... ..+..-+|++..+.+..|.+...- ......+|.+..|+|+.|++.... ..+..++.|..|.+++|++
T Consensus 182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred CcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 332210000 011123456666666665554211 112233445555666666655422 2255566666666666665
Q ss_pred CCcCCCchhhhhhhcCCCCCCEEe
Q 036656 328 GNGEKDDLEFVNSLVNASRLELLQ 351 (367)
Q Consensus 328 ~~~~~~~~~~~~~l~~~~~L~~L~ 351 (367)
....-..-...-.++.+++++.|+
T Consensus 262 ~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 262 SDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cccccCCcceEEEEeeccceEEec
Confidence 544322221222344555555543
No 46
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.57 E-value=1.2e-07 Score=57.20 Aligned_cols=40 Identities=53% Similarity=0.940 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHhCCCCCCCCCCCCCCC--CCCCCccceEec
Q 036656 32 ETDQLALLEFKAKITYDPLEVLSSWNYS--RHFCQWKGVTCS 71 (367)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~c~ 71 (367)
++|+++|++||.++..+|...+.+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999987777889999987 799999999995
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=1.3e-09 Score=101.85 Aligned_cols=178 Identities=24% Similarity=0.325 Sum_probs=96.8
Q ss_pred CCcCCCCCCCcEEEcccccccccCCCCCCCC-CCCCEEEcccCcCc----------ccCCcccCCCCCCCEEEeecCcCc
Q 036656 164 PGKLGSLPKLRILVIHSNNLSGEIPSSFGNL-SSLQVLSASANQFV----------GQIPATLSELKRMRYISFGGNKLS 232 (367)
Q Consensus 164 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~----------~~~~~~l~~~~~L~~L~l~~n~~~ 232 (367)
|-.+..+.+|++|.+.++.+.. ...+..+ ..|++|.. .|.+. +.+... ...-+|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHH
Confidence 5567788899999999887752 1111111 23444422 22211 000000 01235666666666665
Q ss_pred cccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchh-hhCCCCCCeEeccCccCcccCCCC
Q 036656 233 GEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPAS-ISNASNLMRLGIPMNGFRGKVPSF 311 (367)
Q Consensus 233 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~ 311 (367)
.+...+.-++.|+.|+|++|+++. .. .+. .++.|++|||++|.++ .+|.. ...+ +|..|.+++|.++ ....+
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~-v~-~Lr-~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL~gi 250 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTK-VD-NLR-RLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TLRGI 250 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhh-hH-HHH-hcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hhhhH
Confidence 344555556677777777777662 22 333 4677777777777766 33331 1222 3777777777665 34445
Q ss_pred CCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCee
Q 036656 312 GNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNF 357 (367)
Q Consensus 312 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l 357 (367)
.++.+|+.||+++|-+.+- .-...+..+..|++|.|.+|.+
T Consensus 251 e~LksL~~LDlsyNll~~h-----seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEH-----SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HhhhhhhccchhHhhhhcc-----hhhhHHHHHHHHHHHhhcCCcc
Confidence 6667777777777766543 1123334455566666666654
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=1.7e-09 Score=101.25 Aligned_cols=198 Identities=24% Similarity=0.249 Sum_probs=129.8
Q ss_pred cCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCC-CCCcEEEccccccc----------ccCC
Q 036656 120 GYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSL-PKLRILVIHSNNLS----------GEIP 188 (367)
Q Consensus 120 ~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~----------~~~~ 188 (367)
.+.+.|+.+..-.-.-++ |-.+..+..|+.|.+.++.+.. ...+..+ ..|++|- .+|.+. +.+.
T Consensus 84 qkt~~lkl~~~pa~~pt~--pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTE--PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred hhheeeeecccCCCCCCC--CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccc
Confidence 334444444433333332 5667778999999999998873 1222111 1233332 122211 1111
Q ss_pred CCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCC
Q 036656 189 SSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLP 268 (367)
Q Consensus 189 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 268 (367)
..+ ....|...+.++|.++ .+...+.-++.++.|+|++|++++. +.+..+++|++||++.|.++ .+|..--. -.
T Consensus 159 ns~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~-gc 232 (1096)
T KOG1859|consen 159 NSP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMV-GC 232 (1096)
T ss_pred cch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchh-hh
Confidence 111 1245777788888887 4556677788999999999998754 36788899999999999887 66654332 33
Q ss_pred CCCEEEeecCcCccccchhhhCCCCCCeEeccCccCccc--CCCCCCCCCCCEEEccCCcCCCc
Q 036656 269 NLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGK--VPSFGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~l~~~ 330 (367)
.|..|.+++|.++ .+ ..+.++.+|+.||+++|-+.+. ...+..+..|+.|.|.+|++-..
T Consensus 233 ~L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 233 KLQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hheeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 4999999999887 33 3467888999999999988763 33367788899999999988664
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=2.1e-08 Score=84.52 Aligned_cols=165 Identities=17% Similarity=0.120 Sum_probs=89.5
Q ss_pred CCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc-cCccccCCCCCCEEECCCCcCcc--cCChhhhcCCC
Q 036656 192 GNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE-IPFSIYNLSTLSDFHFPFNQLRG--SLPSDLGFTLP 268 (367)
Q Consensus 192 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~ 268 (367)
.++|.|+.|+++.|.+...+...-....+|+.|-+.+..+... ....+..+|.+++|+++.|.+.- .-.......-+
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~ 173 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWST 173 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccch
Confidence 3444444444444444322211101233445555544444321 12233445555555555552220 00000110123
Q ss_pred CCCEEEeecCcCcc--ccchhhhCCCCCCeEeccCccCcccCCC--CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCC
Q 036656 269 NLEVLNLGANQFTG--PIPASISNASNLMRLGIPMNGFRGKVPS--FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNA 344 (367)
Q Consensus 269 ~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 344 (367)
.+++|....|...- ....--.-+|++..+-+..|.+...-.. ...+|.+..|+|+.|++.. |.-...+.++
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids-----wasvD~Ln~f 248 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS-----WASVDALNGF 248 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccccc-----HHHHHHHcCC
Confidence 55566555554320 1111113468889999999988765443 6778888899999998754 4466788999
Q ss_pred CCCCEEeCcCCeeeeeC
Q 036656 345 SRLELLQININNFGGML 361 (367)
Q Consensus 345 ~~L~~L~l~~n~l~g~i 361 (367)
++|..|.++++.+.+.+
T Consensus 249 ~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 249 PQLVDLRVSENPLSDPL 265 (418)
T ss_pred chhheeeccCCcccccc
Confidence 99999999999887554
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=2.1e-08 Score=74.84 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=49.4
Q ss_pred CCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEE
Q 036656 242 LSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVI 321 (367)
Q Consensus 242 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 321 (367)
...|+..++++|.+. .+|+.+...++.++.+++++|.++ .+|.++..++.|+.|+++.|.+...+..+..+.++..|+
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 344555566666665 455555444556666666666666 556666666666666666666654333333456666666
Q ss_pred ccCCcCC
Q 036656 322 ISMNHLG 328 (367)
Q Consensus 322 l~~n~l~ 328 (367)
..+|...
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 6666544
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.7e-08 Score=85.13 Aligned_cols=180 Identities=14% Similarity=0.158 Sum_probs=127.8
Q ss_pred CCCcEEEccccccccc-CCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCc-Cccc-cCccccCCCCCCE
Q 036656 171 PKLRILVIHSNNLSGE-IPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNK-LSGE-IPFSIYNLSTLSD 247 (367)
Q Consensus 171 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~-~~~~l~~~~~L~~ 247 (367)
.+|+++|+++..++.. .-..+..+.+|+.|.+.++.+...+...+.+-..|+.|+++.+. ++.. ..-.+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4599999998776532 22235678899999999999998888888888999999999864 3321 2234678899999
Q ss_pred EECCCCcCcccCCh-hhhcCCCCCCEEEeecCcCc---cccchhhhCCCCCCeEeccCccC-cccCCC-CCCCCCCCEEE
Q 036656 248 FHFPFNQLRGSLPS-DLGFTLPNLEVLNLGANQFT---GPIPASISNASNLMRLGIPMNGF-RGKVPS-FGNLHKLQRVI 321 (367)
Q Consensus 248 L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~-~~~~~~L~~L~ 321 (367)
|+++.|.++..... .+.+--++|+.|+++++.-. ..+..-...+|+|.+|||++|.. +..... +-+++.|+.|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999977643322 22333578999999987421 12333336789999999999854 332222 77889999999
Q ss_pred ccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCC
Q 036656 322 ISMNHLGNGEKDDLEFVNSLVNASRLELLQININ 355 (367)
Q Consensus 322 l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 355 (367)
++.+. +.+|+ -.-.+...|+|.+||+.++
T Consensus 345 lsRCY--~i~p~---~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCY--DIIPE---TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhc--CCChH---HeeeeccCcceEEEEeccc
Confidence 99886 33333 2234677889999998775
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.28 E-value=4.8e-07 Score=75.60 Aligned_cols=241 Identities=17% Similarity=0.151 Sum_probs=135.7
Q ss_pred hhhcCCCCCcEEEccCCCCCCC----cCccccCCCCCCEEEeeCCCCC---CCCC-------CcCCCCCCCcEEEccccc
Q 036656 117 RAIGYLFRLRILRLDNNTFGGQ----IPDNISHCIKLESLRLGFNELE---GKVP-------GKLGSLPKLRILVIHSNN 182 (367)
Q Consensus 117 ~~l~~l~~L~~L~l~~~~l~~~----~p~~~~~l~~L~~L~l~~n~~~---~~~~-------~~l~~l~~L~~L~l~~n~ 182 (367)
..+..+..++.+++++|.+... +...+.+-.+|+..+++.-... ..++ ..+..+|+|+..+++.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3455688899999999988643 3334555677888877753221 1111 234577888888888888
Q ss_pred ccccCCCCC----CCCCCCCEEEcccCcCcccCCc-------------ccCCCCCCCEEEeecCcCccccC----ccccC
Q 036656 183 LSGEIPSSF----GNLSSLQVLSASANQFVGQIPA-------------TLSELKRMRYISFGGNKLSGEIP----FSIYN 241 (367)
Q Consensus 183 ~~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~-------------~l~~~~~L~~L~l~~n~~~~~~~----~~l~~ 241 (367)
+....|+.+ .+-..|.+|.+++|.+....-. ....-|.|+.+....|++..... ..+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 776555443 4457788888888776421111 12344677777777777642110 11222
Q ss_pred CCCCCEEECCCCcCcccCCh-----hhhcCCCCCCEEEeecCcCccc----cchhhhCCCCCCeEeccCccCcccCCC--
Q 036656 242 LSTLSDFHFPFNQLRGSLPS-----DLGFTLPNLEVLNLGANQFTGP----IPASISNASNLMRLGIPMNGFRGKVPS-- 310 (367)
Q Consensus 242 ~~~L~~L~l~~n~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~-- 310 (367)
-..|+.+.+..|.+.-.... .++ .+.+|+.||++.|.++-. +...+...+.|+.|.+..|-+...-..
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 24677777777766522111 112 357777777777776622 223334445677777777766532111
Q ss_pred ---C--CCCCCCCEEEccCCcCCCcCCCchhhhhh-hcCCCCCCEEeCcCCeee
Q 036656 311 ---F--GNLHKLQRVIISMNHLGNGEKDDLEFVNS-LVNASRLELLQININNFG 358 (367)
Q Consensus 311 ---~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~ 358 (367)
| ...|+|..|...+|...+.+......+.. =.++|-|..|.+.+|.|.
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 1 13566777777777666553222111111 123455555556666554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=1.1e-06 Score=85.59 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=89.6
Q ss_pred CCCCEEEcccCcCccc-CCccc-CCCCCCCEEEeecCcCcc-ccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCC
Q 036656 195 SSLQVLSASANQFVGQ-IPATL-SELKRMRYISFGGNKLSG-EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLE 271 (367)
Q Consensus 195 ~~L~~L~l~~n~~~~~-~~~~l-~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 271 (367)
.+|++|++++...-.. =+..+ ..+|.|+.|.+++-.+.. .+.....++++|..||+++.+++ .+ ..+. .+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHH
Confidence 5788888877543211 11112 346888888888765532 23344556788888888887776 33 3444 578888
Q ss_pred EEEeecCcCcc-ccchhhhCCCCCCeEeccCccCcccC--C----C-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcC
Q 036656 272 VLNLGANQFTG-PIPASISNASNLMRLGIPMNGFRGKV--P----S-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVN 343 (367)
Q Consensus 272 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~--~----~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 343 (367)
.|.+.+-.+.. ..-..+..+.+|+.||+|........ . + -..+|+|+.||.|++.+.... +...+..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~-----le~ll~s 273 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI-----LEELLNS 273 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH-----HHHHHHh
Confidence 88777766652 22334567788888888876543321 1 1 234778888888877766651 2233444
Q ss_pred CCCCCEEeCc
Q 036656 344 ASRLELLQIN 353 (367)
Q Consensus 344 ~~~L~~L~l~ 353 (367)
.++|+.+..-
T Consensus 274 H~~L~~i~~~ 283 (699)
T KOG3665|consen 274 HPNLQQIAAL 283 (699)
T ss_pred CccHhhhhhh
Confidence 5566555433
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=5.6e-06 Score=66.31 Aligned_cols=104 Identities=21% Similarity=0.297 Sum_probs=58.8
Q ss_pred CCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccC-CCCCCCCCCCCEEE
Q 036656 123 FRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEI-PSSFGNLSSLQVLS 201 (367)
Q Consensus 123 ~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~ 201 (367)
.+...+|+++|.+. .+ ..|..++.|.+|.+++|+++...|.--..+++|+.|.+.+|.+.... -..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34556667776665 22 33556667777777777776555544455566777777776654211 12345566666666
Q ss_pred cccCcCcccC---CcccCCCCCCCEEEeec
Q 036656 202 ASANQFVGQI---PATLSELKRMRYISFGG 228 (367)
Q Consensus 202 l~~n~~~~~~---~~~l~~~~~L~~L~l~~ 228 (367)
+-+|.++..- ...+..+|+|+.||+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666554211 12344556666666654
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=5.3e-06 Score=50.07 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=16.1
Q ss_pred CCCEEEeecCcCccccchhhhCCCCCCeEeccCccCc
Q 036656 269 NLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFR 305 (367)
Q Consensus 269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 305 (367)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4444555555544 33333444555555555554444
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=7e-06 Score=65.77 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=56.1
Q ss_pred CCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCcccc-chhhhCCCCCCeE
Q 036656 219 KRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPI-PASISNASNLMRL 297 (367)
Q Consensus 219 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L 297 (367)
.+...+|+++|++.. ...|..++.|.+|.+..|+++ .+.+.+...+++|..|.+.+|.+.... ...+..+|+|++|
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345566666666642 133455666666666666666 344444434566666666666654110 1123455666666
Q ss_pred eccCccCcccCCC----CCCCCCCCEEEccC
Q 036656 298 GIPMNGFRGKVPS----FGNLHKLQRVIISM 324 (367)
Q Consensus 298 ~l~~n~~~~~~~~----~~~~~~L~~L~l~~ 324 (367)
.+-+|.++..... +..+|+|+.||.+.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666666543221 44566666666554
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=9.8e-06 Score=48.90 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=17.6
Q ss_pred CCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCC
Q 036656 100 FLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFG 136 (367)
Q Consensus 100 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 136 (367)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=5.5e-05 Score=68.49 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=74.2
Q ss_pred ccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCc
Q 036656 95 IGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLR 174 (367)
Q Consensus 95 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (367)
+..+++++.|++++|.++ .+|. + ..+|++|.+++|.--..+|..+. ++|++|++++|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 455688889999988877 4552 2 23588899887543336665442 5788888887732223343 366
Q ss_pred EEEcccccccccCCCCCCCC-CCCCEEEcccCcCc--ccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECC
Q 036656 175 ILVIHSNNLSGEIPSSFGNL-SSLQVLSASANQFV--GQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFP 251 (367)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 251 (367)
.|++..+... . +..+ ++|+.|.+.+++.. ...+.. -.++|++|++++|... ..|..+. .+|++|+++
T Consensus 116 ~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCc-c----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 6666554332 1 1122 24556665432211 001111 1146777777766644 2332222 466667666
Q ss_pred CC
Q 036656 252 FN 253 (367)
Q Consensus 252 ~n 253 (367)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=4.5e-07 Score=67.91 Aligned_cols=84 Identities=23% Similarity=0.222 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.+++++|.+....+....+++.++.+++.+|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 57777888888777655555566677777888887776 57777777777888887777777 55666666677777777
Q ss_pred eCCCCC
Q 036656 155 GFNELE 160 (367)
Q Consensus 155 ~~n~~~ 160 (367)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 666655
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=5.8e-05 Score=68.33 Aligned_cols=136 Identities=17% Similarity=0.282 Sum_probs=83.1
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccC-cCcccCCcccCCCCCC
Q 036656 143 ISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASAN-QFVGQIPATLSELKRM 221 (367)
Q Consensus 143 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L 221 (367)
+..+.+++.|++++|.++ .+|. --++|+.|.++++.--..+|..+ .++|++|++++| .+. .+| +.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence 445688999999999777 4452 12369999998754433556544 257889999887 333 333 457
Q ss_pred CEEEeecCcCcc--ccCccccCCCCCCEEECCCCcCc--ccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeE
Q 036656 222 RYISFGGNKLSG--EIPFSIYNLSTLSDFHFPFNQLR--GSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRL 297 (367)
Q Consensus 222 ~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 297 (367)
+.|++..+.... .+| ++|++|.+.+++.. ..++. . -+++|++|++++|... ..|..+. .+|+.|
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheecccccccccccccc-c--cCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 777777655431 222 35667777543211 11121 1 1468888888888765 4444333 578888
Q ss_pred eccCcc
Q 036656 298 GIPMNG 303 (367)
Q Consensus 298 ~l~~n~ 303 (367)
+++.+.
T Consensus 183 ~ls~n~ 188 (426)
T PRK15386 183 TLHIEQ 188 (426)
T ss_pred Eecccc
Confidence 887664
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.63 E-value=1.7e-06 Score=76.54 Aligned_cols=276 Identities=16% Similarity=0.102 Sum_probs=135.1
Q ss_pred CcEEEEEcCCCCcccc--cCccccCCCCCcEEEccCCC-CCCCcchhh-cCCCCCcEEEccCCC-CCCCcCc-cccCCCC
Q 036656 75 QRVTALLLPSLLLQGS--LSPHIGNLSFLRVLSLKNNS-FRNEIPRAI-GYLFRLRILRLDNNT-FGGQIPD-NISHCIK 148 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l-~~l~~L~~L~l~~~~-l~~~~p~-~~~~l~~ 148 (367)
++++++++.+..-.+. +-.....+|++++|.+.++. ++...-..+ ..++.|++|++..|. ++...-+ ...++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4566666665543332 12233467777777777663 343322333 246777777777643 3211111 2235677
Q ss_pred CCEEEeeCCCC-CCC-CCCcCCCCCCCcEEEccccccccc--CCCCCCCCCCCCEEEcccC-cCcccCC-cccCCCCCCC
Q 036656 149 LESLRLGFNEL-EGK-VPGKLGSLPKLRILVIHSNNLSGE--IPSSFGNLSSLQVLSASAN-QFVGQIP-ATLSELKRMR 222 (367)
Q Consensus 149 L~~L~l~~n~~-~~~-~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~~-~~l~~~~~L~ 222 (367)
|++++++++.- ++. +-.....+..++.+.+.+|.-.+. +-..-+.+.-+..+++..+ .++...- ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 77777777652 221 111223344444444443321100 0000011222333333222 2221110 0112345667
Q ss_pred EEEeecCcCccc-cC-ccccCCCCCCEEECCCCc-CcccCChhhhcCCCCCCEEEeecCcCc--cccchhhhCCCCCCeE
Q 036656 223 YISFGGNKLSGE-IP-FSIYNLSTLSDFHFPFNQ-LRGSLPSDLGFTLPNLEVLNLGANQFT--GPIPASISNASNLMRL 297 (367)
Q Consensus 223 ~L~l~~n~~~~~-~~-~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L 297 (367)
.++.+++...+. .- .--.+.++|+.|.+++++ +++.--..+....+.|+.+++..+... +.+..--.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 777766543211 11 122346777777777774 333333344445677777777766432 1122212356778888
Q ss_pred eccCccCcccC-----CC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCC
Q 036656 298 GIPMNGFRGKV-----PS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININ 355 (367)
Q Consensus 298 ~l~~n~~~~~~-----~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 355 (367)
.++++....+. .. -..+..++.+.|++.+.+.+ ...+.+..|++|+.+++-++
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-----~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-----ATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-----HHHHHHhhCcccceeeeech
Confidence 88777533221 11 34566777777777765443 14466677777777777665
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.47 E-value=0.0006 Score=52.14 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=5.1
Q ss_pred ccCCCCCCEEEeeC
Q 036656 143 ISHCIKLESLRLGF 156 (367)
Q Consensus 143 ~~~l~~L~~L~l~~ 156 (367)
|.++++|+.+.+..
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 34444444444433
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=6.3e-05 Score=62.88 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCCCCEEEeecC--cCccccchhhhCCCCCCeEeccCccCcc--cCCCCCCCCCCCEEEccCCcCCC
Q 036656 267 LPNLEVLNLGAN--QFTGPIPASISNASNLMRLGIPMNGFRG--KVPSFGNLHKLQRVIISMNHLGN 329 (367)
Q Consensus 267 ~~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n~l~~ 329 (367)
+++|++|.++.| +.++.+......+|+|+++++++|++.. .++.+..+.+|..|++.+|..+.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 344444444444 3332222222333444444444444432 12223444444455555444333
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=9.1e-05 Score=72.54 Aligned_cols=141 Identities=20% Similarity=0.251 Sum_probs=101.7
Q ss_pred CCCCEEEeecCcCc-cccCccc-cCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCe
Q 036656 219 KRMRYISFGGNKLS-GEIPFSI-YNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMR 296 (367)
Q Consensus 219 ~~L~~L~l~~n~~~-~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 296 (367)
.+|++|++++...- ..-+..+ ..+|+|++|.+.+-.+...--..+...+|+|..||+++.+++ .+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 68999999885432 1222223 347999999999876653222344457999999999999998 33 56899999999
Q ss_pred EeccCccCcc--cCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeC
Q 036656 297 LGIPMNGFRG--KVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGML 361 (367)
Q Consensus 297 L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~i 361 (367)
|.+++=.+.. .+..+-.+++|+.||+|..+.....----.+.+.-..+|+|+.||.|++.+++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9999877764 2334668999999999987655442111124455667999999999998877643
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00096 Score=50.96 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=57.1
Q ss_pred cccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCC
Q 036656 94 HIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKL 173 (367)
Q Consensus 94 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 173 (367)
.+.++++|+.+.+.. .+.......|..+++|+.+.+.++ +...-...|.+++.++.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456677788888764 455445556777878888888764 5533344567776788888854 3332334456667778
Q ss_pred cEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCC
Q 036656 174 RILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRM 221 (367)
Q Consensus 174 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 221 (367)
+.+.+..+ +.......+..+ +|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 87777654 332334455555 777776654 3332333444444444
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.27 E-value=0.00013 Score=36.62 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=17.9
Q ss_pred CCCEEeCcCCeeeeeCCCCCCC
Q 036656 346 RLELLQININNFGGMLPEAVGN 367 (367)
Q Consensus 346 ~L~~L~l~~n~l~g~iP~~~~~ 367 (367)
+|++|||++|+|+ .||++|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4788999999999 89998864
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00042 Score=58.08 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=48.3
Q ss_pred cccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCC--CCCCCcCccccCCCCCCEEEeeCCCCCCC-CCCcCCCC
Q 036656 94 HIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNN--TFGGQIPDNISHCIKLESLRLGFNELEGK-VPGKLGSL 170 (367)
Q Consensus 94 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l 170 (367)
....+..|+.+++.+..++. ...+..+++|++|.++.| .+.+.++.....+++|+++++++|++... .-..+..+
T Consensus 38 l~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 33445555666666655542 123455667777777777 44444444444557777777777766520 11123444
Q ss_pred CCCcEEEccccccc
Q 036656 171 PKLRILVIHSNNLS 184 (367)
Q Consensus 171 ~~L~~L~l~~n~~~ 184 (367)
.+|..|++.+|..+
T Consensus 116 ~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcc
Confidence 55556666655443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=8.1e-05 Score=62.80 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=54.9
Q ss_pred CCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccC--CCCCCCCCCCEE
Q 036656 243 STLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKV--PSFGNLHKLQRV 320 (367)
Q Consensus 243 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L 320 (367)
.+.+.|+..+|.+++ +.- ...++.|++|.|+-|+++..- .+..+.+|++|.|+.|.|.+.. ..+.++|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~D-Isi--c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD-ISI--CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccH-HHH--HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 345556666666552 221 124666666666666666222 2455666666666666665422 225666666666
Q ss_pred EccCCcCCCcCCCchhhhhhhcCCCCCCEEe
Q 036656 321 IISMNHLGNGEKDDLEFVNSLVNASRLELLQ 351 (367)
Q Consensus 321 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 351 (367)
-|..|+-.+.-+..+. ...+--+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR-~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYR-RKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHH-HHHHHHcccchhcc
Confidence 6666665555443331 12234455555543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.69 E-value=0.00013 Score=69.41 Aligned_cols=109 Identities=25% Similarity=0.205 Sum_probs=46.8
Q ss_pred CCCCcEEEccCCC-CCCC-cchhhcCCCCCcEEEccCC-CCCCCcC----ccccCCCCCCEEEeeCCC-CCCCCCCcC-C
Q 036656 98 LSFLRVLSLKNNS-FRNE-IPRAIGYLFRLRILRLDNN-TFGGQIP----DNISHCIKLESLRLGFNE-LEGKVPGKL-G 168 (367)
Q Consensus 98 l~~L~~L~l~~~~-l~~~-~~~~l~~l~~L~~L~l~~~-~l~~~~p----~~~~~l~~L~~L~l~~n~-~~~~~~~~l-~ 168 (367)
.+.|+.+.+..+. ++.. .-.....+++|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4566666665552 2211 2233445666666666652 1111111 122334556666666555 332211122 1
Q ss_pred CCCCCcEEEccccc-cccc-CCCCCCCCCCCCEEEcccCc
Q 036656 169 SLPKLRILVIHSNN-LSGE-IPSSFGNLSSLQVLSASANQ 206 (367)
Q Consensus 169 ~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~ 206 (367)
.+++|++|.+..+. ++.. +-.....++.|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25556666554444 2211 11112234556666655444
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.00021 Score=60.32 Aligned_cols=101 Identities=24% Similarity=0.235 Sum_probs=63.8
Q ss_pred CCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcccc-CccccCCCCCCEE
Q 036656 170 LPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEI-PFSIYNLSTLSDF 248 (367)
Q Consensus 170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L 248 (367)
+.+.+.|+..++.+.++ ....+|+.|+.|.|+-|.++.. ..+..+++|++|+|..|.|.... -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45566777777776532 2234677788888887777643 34667777888888777775321 1345677777777
Q ss_pred ECCCCcCcccCChh----hhcCCCCCCEEE
Q 036656 249 HFPFNQLRGSLPSD----LGFTLPNLEVLN 274 (367)
Q Consensus 249 ~l~~n~~~~~~~~~----~~~~~~~L~~L~ 274 (367)
.|..|.-.|..+.. +...+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777665544432 223467777665
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.12 E-value=8.1e-05 Score=66.22 Aligned_cols=258 Identities=18% Similarity=0.136 Sum_probs=151.3
Q ss_pred CCCcEEEccCCCCCCC--cchhhcCCCCCcEEEccCCCC-CCCcCccc-cCCCCCCEEEeeCCC-CCCCCCC-cCCCCCC
Q 036656 99 SFLRVLSLKNNSFRNE--IPRAIGYLFRLRILRLDNNTF-GGQIPDNI-SHCIKLESLRLGFNE-LEGKVPG-KLGSLPK 172 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~--~~~~l~~l~~L~~L~l~~~~l-~~~~p~~~-~~l~~L~~L~l~~n~-~~~~~~~-~l~~l~~ 172 (367)
-.|+.|.++++.-.+. +-..-..+|++++|++.++.. +...-..+ ..+++|++|++..|. ++..... ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3688899998754332 333446789999999988863 21111112 356889999998854 4432222 2356889
Q ss_pred CcEEEcccccc-ccc-CCCCCCCCCCCCEEEcccCcCcc--cCCcccCCCCCCCEEEeecCc-Ccccc-CccccCCCCCC
Q 036656 173 LRILVIHSNNL-SGE-IPSSFGNLSSLQVLSASANQFVG--QIPATLSELKRMRYISFGGNK-LSGEI-PFSIYNLSTLS 246 (367)
Q Consensus 173 L~~L~l~~n~~-~~~-~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~-~~~~~-~~~l~~~~~L~ 246 (367)
|++++++.+.- ++. +..-...++.++.+...++.-.+ .+-..-..+..+..+++..+. +++.- ...-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999988753 221 11122344556666555432111 000111334455566655543 33221 12224567889
Q ss_pred EEECCCCcC-cccCChhhhcCCCCCCEEEeecCc-Cccccchhh-hCCCCCCeEeccCccCccc--CCC-CCCCCCCCEE
Q 036656 247 DFHFPFNQL-RGSLPSDLGFTLPNLEVLNLGANQ-FTGPIPASI-SNASNLMRLGIPMNGFRGK--VPS-FGNLHKLQRV 320 (367)
Q Consensus 247 ~L~l~~n~~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~~~~~--~~~-~~~~~~L~~L 320 (367)
.|+.+++.. ++..-..+....++|+.+-+..++ |+..-...+ .+.+.|+.+++..+....+ +.. -.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 999888743 333333455567999999999886 442222222 4678899999998865432 334 5678999999
Q ss_pred EccCCcCCCcCCCchh-hhhhhcCCCCCCEEeCcCCeee
Q 036656 321 IISMNHLGNGEKDDLE-FVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 321 ~l~~n~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
.++.+....+. +.. +-..-.....|+.+.+++++.+
T Consensus 378 slshce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 378 SLSHCELITDE--GIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred Chhhhhhhhhh--hhhhhhhccccccccceeeecCCCCc
Confidence 99977543321 111 1233456778999999998654
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.65 E-value=0.0014 Score=62.19 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=84.3
Q ss_pred CCCCcEEEccccccccc--CCCCCCCCCCCCEEEcccC-cCcccC----CcccCCCCCCCEEEeecCc-CccccCcccc-
Q 036656 170 LPKLRILVIHSNNLSGE--IPSSFGNLSSLQVLSASAN-QFVGQI----PATLSELKRMRYISFGGNK-LSGEIPFSIY- 240 (367)
Q Consensus 170 l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~----~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~- 240 (367)
.+.|+.+.+..+..... .......++.|+.|+++++ ...... ......+++|+.|+++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666655432211 1122345567777777652 111011 1123445777777777766 4433222222
Q ss_pred CCCCCCEEECCCCc-CcccCChhhhcCCCCCCEEEeecCcCccc--cchhhhCCCCCCeEeccCcc----Ccc-------
Q 036656 241 NLSTLSDFHFPFNQ-LRGSLPSDLGFTLPNLEVLNLGANQFTGP--IPASISNASNLMRLGIPMNG----FRG------- 306 (367)
Q Consensus 241 ~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~----~~~------- 306 (367)
.+++|++|.+.++. +++..-..+...+++|++|+++++..... +.....++++++.|.+.... ++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 36778888877665 55444445555677788888887754311 22223345555554433322 110
Q ss_pred -----cCCC--CCCCCCCCEEEccCCcCCC
Q 036656 307 -----KVPS--FGNLHKLQRVIISMNHLGN 329 (367)
Q Consensus 307 -----~~~~--~~~~~~L~~L~l~~n~l~~ 329 (367)
.... ...+++++.+.+.....+.
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~ 376 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISD 376 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccC
Confidence 1111 5678888888888877433
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.49 E-value=0.0067 Score=28.16 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=7.3
Q ss_pred CCCEEeCcCCeeeeeCC
Q 036656 346 RLELLQININNFGGMLP 362 (367)
Q Consensus 346 ~L~~L~l~~n~l~g~iP 362 (367)
+|+.|++++|+++ .+|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 5666666666655 443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.0074 Score=30.16 Aligned_cols=18 Identities=33% Similarity=0.587 Sum_probs=8.1
Q ss_pred CcEEEccCCCCCCCcCccc
Q 036656 125 LRILRLDNNTFGGQIPDNI 143 (367)
Q Consensus 125 L~~L~l~~~~l~~~~p~~~ 143 (367)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 444433
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.10 E-value=0.00012 Score=68.70 Aligned_cols=183 Identities=21% Similarity=0.197 Sum_probs=109.7
Q ss_pred CCCEEEeeCCCCCCCCC----CcCCCCCCCcEEEcccccccccC----CCCCCCC-CCCCEEEcccCcCccc----CCcc
Q 036656 148 KLESLRLGFNELEGKVP----GKLGSLPKLRILVIHSNNLSGEI----PSSFGNL-SSLQVLSASANQFVGQ----IPAT 214 (367)
Q Consensus 148 ~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l-~~L~~L~l~~n~~~~~----~~~~ 214 (367)
.+..|.+.+|.+..... ..+...+.|+.|+++.|.+.+.. -..+... ..+++|++..+.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 47788888888874432 33466788888999988876321 1222222 5667777777776543 3344
Q ss_pred cCCCCCCCEEEeecCcCcc----ccCcccc----CCCCCCEEECCCCcCcccCChhh---hcCCCC-CCEEEeecCcCcc
Q 036656 215 LSELKRMRYISFGGNKLSG----EIPFSIY----NLSTLSDFHFPFNQLRGSLPSDL---GFTLPN-LEVLNLGANQFTG 282 (367)
Q Consensus 215 l~~~~~L~~L~l~~n~~~~----~~~~~l~----~~~~L~~L~l~~n~~~~~~~~~~---~~~~~~-L~~L~l~~n~l~~ 282 (367)
+.....++.++++.|.+.. .++..+. ...++++|.+.+|.++...-..+ ....+. +.++++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5557788888888887731 1222233 35677788888877662221111 112233 5567777777763
Q ss_pred c----cchhhhCC-CCCCeEeccCccCcccCC----C-CCCCCCCCEEEccCCcCCCc
Q 036656 283 P----IPASISNA-SNLMRLGIPMNGFRGKVP----S-FGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 283 ~----~~~~l~~l-~~L~~L~l~~n~~~~~~~----~-~~~~~~L~~L~l~~n~l~~~ 330 (367)
. ....+..+ ..+++++++.|.+++.-. . +..++.++.+.+++|++...
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 3 12233344 566777777777765322 2 45566777777777777654
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.0044 Score=50.11 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=34.8
Q ss_pred CCEEEeecCcCccccCccccCCCCCCEEECCCCcCc-ccCChhhhcCCCCCCEEEeecC-cCccccchhhhCCCCCCeEe
Q 036656 221 MRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLR-GSLPSDLGFTLPNLEVLNLGAN-QFTGPIPASISNASNLMRLG 298 (367)
Q Consensus 221 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~ 298 (367)
++.++.++..+...--..+..++.++.|.+.+|.-. +..-+.+....++|+.|++++| +|++.-...+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444444444333334444444455554444221 1111122223455555555554 34433334445555555555
Q ss_pred ccC
Q 036656 299 IPM 301 (367)
Q Consensus 299 l~~ 301 (367)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.27 E-value=0.0032 Score=32.26 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=10.3
Q ss_pred CCCCEEeCcCCeeeeeCCCC
Q 036656 345 SRLELLQININNFGGMLPEA 364 (367)
Q Consensus 345 ~~L~~L~l~~n~l~g~iP~~ 364 (367)
++|++|+|++|+|++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666666544433
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=0.014 Score=47.31 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=33.5
Q ss_pred CCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCcccc-chhhh-CCCCCCeEeccCc-cCcccCCC-CCCCCCCCEE
Q 036656 245 LSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPI-PASIS-NASNLMRLGIPMN-GFRGKVPS-FGNLHKLQRV 320 (367)
Q Consensus 245 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~-~l~~L~~L~l~~n-~~~~~~~~-~~~~~~L~~L 320 (367)
++.++-++..+....-..+. .++.++.|.+.+|.--+.. ...++ -.++|+.|++++| .|++.--. +..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 44555555544432222222 3455555555554322111 11111 2345555555554 23332222 4455555555
Q ss_pred EccCC
Q 036656 321 IISMN 325 (367)
Q Consensus 321 ~l~~n 325 (367)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 55443
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.54 E-value=0.00027 Score=66.28 Aligned_cols=203 Identities=24% Similarity=0.245 Sum_probs=108.3
Q ss_pred CcEEEccCCCCCCC----cchhhcCCCCCcEEEccCCCCCCCc----CccccCC-CCCCEEEeeCCCCCCC----CCCcC
Q 036656 101 LRVLSLKNNSFRNE----IPRAIGYLFRLRILRLDNNTFGGQI----PDNISHC-IKLESLRLGFNELEGK----VPGKL 167 (367)
Q Consensus 101 L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l~~~~----p~~~~~l-~~L~~L~l~~n~~~~~----~~~~l 167 (367)
+..+.|.+|.+... +...+...++|..|++++|.+...- -..+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56666666666543 3334455667777777777665211 1112222 4456666666666532 22334
Q ss_pred CCCCCCcEEEcccccccc----cCCCCCC----CCCCCCEEEcccCcCcccC----CcccCCCCC-CCEEEeecCcCccc
Q 036656 168 GSLPKLRILVIHSNNLSG----EIPSSFG----NLSSLQVLSASANQFVGQI----PATLSELKR-MRYISFGGNKLSGE 234 (367)
Q Consensus 168 ~~l~~L~~L~l~~n~~~~----~~~~~l~----~l~~L~~L~l~~n~~~~~~----~~~l~~~~~-L~~L~l~~n~~~~~ 234 (367)
.....++.++++.|.+.. .++..+. ...++++|.+.++.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456667777777776531 1122222 3566777777777665221 122334444 66678888777533
Q ss_pred ----cCccccCC-CCCCEEECCCCcCcccCChhhh---cCCCCCCEEEeecCcCccccc----hhhhCCCCCCeEeccCc
Q 036656 235 ----IPFSIYNL-STLSDFHFPFNQLRGSLPSDLG---FTLPNLEVLNLGANQFTGPIP----ASISNASNLMRLGIPMN 302 (367)
Q Consensus 235 ----~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n 302 (367)
....+..+ ..++.++++.|.+++.....+. ..++.++++.+++|.+.+.-. ..+.....+..+.+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 22333344 5667888888877744333221 135677788888887763321 12223344555555544
Q ss_pred c
Q 036656 303 G 303 (367)
Q Consensus 303 ~ 303 (367)
.
T Consensus 329 ~ 329 (478)
T KOG4308|consen 329 G 329 (478)
T ss_pred C
Confidence 3
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.84 E-value=0.0013 Score=54.30 Aligned_cols=83 Identities=22% Similarity=0.132 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.||++.+.+.. .-..+..++.+..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..+.++++++
T Consensus 42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 466666666655431 2223444555666666666654 45666666666666666666665 56666666666666666
Q ss_pred eCCCCC
Q 036656 155 GFNELE 160 (367)
Q Consensus 155 ~~n~~~ 160 (367)
..+.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 665544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.58 E-value=0.087 Score=27.37 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=13.6
Q ss_pred CCCCEEeCcCCeeeeeCCCC
Q 036656 345 SRLELLQININNFGGMLPEA 364 (367)
Q Consensus 345 ~~L~~L~l~~n~l~g~iP~~ 364 (367)
++|+.|+|++|+++ .||++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 56777888888777 66654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.58 E-value=0.087 Score=27.37 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=13.6
Q ss_pred CCCCEEeCcCCeeeeeCCCC
Q 036656 345 SRLELLQININNFGGMLPEA 364 (367)
Q Consensus 345 ~~L~~L~l~~n~l~g~iP~~ 364 (367)
++|+.|+|++|+++ .||++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 56777888888777 66654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.08 E-value=0.0054 Score=50.76 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=75.9
Q ss_pred ccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCC
Q 036656 93 PHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPK 172 (367)
Q Consensus 93 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 172 (367)
..+..+...+.||++.|++- .+-..|..+..|..|+++.|.+. .+|..++.+..+..+++..|... ..|.++...+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 45677888999999999875 45556777888999999999998 89999999999999999988877 67999999999
Q ss_pred CcEEEccccccc
Q 036656 173 LRILVIHSNNLS 184 (367)
Q Consensus 173 L~~L~l~~n~~~ 184 (367)
+++++.-.+.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999888765
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.08 E-value=0.36 Score=24.96 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=9.2
Q ss_pred CCCCEEECCCCcCcccCChh
Q 036656 243 STLSDFHFPFNQLRGSLPSD 262 (367)
Q Consensus 243 ~~L~~L~l~~n~~~~~~~~~ 262 (367)
++|++|+|++|++. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555554 44443
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.08 E-value=0.36 Score=24.96 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=9.2
Q ss_pred CCCCEEECCCCcCcccCChh
Q 036656 243 STLSDFHFPFNQLRGSLPSD 262 (367)
Q Consensus 243 ~~L~~L~l~~n~~~~~~~~~ 262 (367)
++|++|+|++|++. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555554 44443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.85 E-value=0.2 Score=25.96 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=13.2
Q ss_pred CCCCEEeCcCCeeeeeCCC
Q 036656 345 SRLELLQININNFGGMLPE 363 (367)
Q Consensus 345 ~~L~~L~l~~n~l~g~iP~ 363 (367)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777888888877 7775
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.81 E-value=2 Score=22.31 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=10.6
Q ss_pred CCCCEEeCcCCeee
Q 036656 345 SRLELLQININNFG 358 (367)
Q Consensus 345 ~~L~~L~l~~n~l~ 358 (367)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56778888888775
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.29 E-value=2 Score=22.70 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=10.2
Q ss_pred CCCCEEeCcCCeee
Q 036656 345 SRLELLQININNFG 358 (367)
Q Consensus 345 ~~L~~L~l~~n~l~ 358 (367)
++|++|||++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777888887775
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.48 E-value=2.1 Score=40.47 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=16.2
Q ss_pred CCCCCEEECCCCcCccc-CChhhhcCCCCCCEEEeecC
Q 036656 242 LSTLSDFHFPFNQLRGS-LPSDLGFTLPNLEVLNLGAN 278 (367)
Q Consensus 242 ~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~n 278 (367)
.+.+..+.|++|++... -...+....|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555554310 00112223455555555555
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.15 E-value=2.5 Score=40.00 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCCCCCEEEeecCcCccc--cCccccCCCCCCEEECCCC--cCcccCChhhhcCCCCCCEEEeecCcCccc
Q 036656 217 ELKRMRYISFGGNKLSGE--IPFSIYNLSTLSDFHFPFN--QLRGSLPSDLGFTLPNLEVLNLGANQFTGP 283 (367)
Q Consensus 217 ~~~~L~~L~l~~n~~~~~--~~~~l~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 283 (367)
+.+.+..+.+++|++... +...-...++|+.|+|++| .+. ..++.-......|++|.+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccc
Confidence 456677777777777521 2223344677888888887 332 11211111356677888888877644
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.98 E-value=18 Score=33.88 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=6.8
Q ss_pred CCCCCEEEccCCc
Q 036656 314 LHKLQRVIISMNH 326 (367)
Q Consensus 314 ~~~L~~L~l~~n~ 326 (367)
-+.+..|++++|.
T Consensus 439 tqtl~kldisgn~ 451 (553)
T KOG4242|consen 439 TQTLAKLDISGNG 451 (553)
T ss_pred CcccccccccCCC
Confidence 3445555555554
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.70 E-value=4.6 Score=20.73 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=7.8
Q ss_pred CCCCCEEeCcCC
Q 036656 344 ASRLELLQININ 355 (367)
Q Consensus 344 ~~~L~~L~l~~n 355 (367)
|++|+.|+|++|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 456666777666
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.83 E-value=1.1e+02 Score=29.07 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=55.6
Q ss_pred CCCEEEeecCcCccccCcc--ccCCCCCCEEECCCCcC---c--ccCChhh---hcCCCCCCEEEeecCcCccccc---h
Q 036656 220 RMRYISFGGNKLSGEIPFS--IYNLSTLSDFHFPFNQL---R--GSLPSDL---GFTLPNLEVLNLGANQFTGPIP---A 286 (367)
Q Consensus 220 ~L~~L~l~~n~~~~~~~~~--l~~~~~L~~L~l~~n~~---~--~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~ 286 (367)
.+++|....|...+..-.. ....+..+.+++....- - +.....+ ....--+..+.++.+......- .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4677777777665543322 22334455555543211 0 0000111 1122346677777777652221 2
Q ss_pred hhhCCCCCCeEeccCccCccc----CCC-CCCCCCCCEEEccCCcCC
Q 036656 287 SISNASNLMRLGIPMNGFRGK----VPS-FGNLHKLQRVIISMNHLG 328 (367)
Q Consensus 287 ~l~~l~~L~~L~l~~n~~~~~----~~~-~~~~~~L~~L~l~~n~l~ 328 (367)
.+..-+.+..|++++|..... +|. ......++.+..+.|...
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 234567889999999876542 222 333445666666666544
No 94
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=45.94 E-value=40 Score=27.74 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=24.9
Q ss_pred chhhHHHHHHHHHHHHHHhhccccccCCCCHHhHHHHHHHHHhCCCCC
Q 036656 2 MSSIIVSICFFIFCCFSFSLQSTDSALKSNETDQLALLEFKAKITYDP 49 (367)
Q Consensus 2 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 49 (367)
...+++++++|++|-++|.+.++.+ .....|.+-++.-+..|
T Consensus 131 LIClIIIAVLfLICT~LfLSTVVLA------NKVS~LKrskQ~gKRqp 172 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLFLSTVVLA------NKVSSLKRSKQVGKRQP 172 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhccCC
Confidence 3455666777888877776665433 34456666666444344
No 95
>COG5510 Predicted small secreted protein [Function unknown]
Probab=34.36 E-value=67 Score=19.01 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=9.4
Q ss_pred CchhhHHHHHHHHHHHHHH
Q 036656 1 MMSSIIVSICFFIFCCFSF 19 (367)
Q Consensus 1 ~m~~~~~~~~~~~~~~~~~ 19 (367)
||+.....+..|+++.+++
T Consensus 1 mmk~t~l~i~~vll~s~ll 19 (44)
T COG5510 1 MMKKTILLIALVLLASTLL 19 (44)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 6665544444444444443
No 96
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=31.26 E-value=58 Score=27.20 Aligned_cols=12 Identities=0% Similarity=-0.158 Sum_probs=5.3
Q ss_pred CCCEEECCCCcC
Q 036656 244 TLSDFHFPFNQL 255 (367)
Q Consensus 244 ~L~~L~l~~n~~ 255 (367)
+++--.|.+|++
T Consensus 197 N~eGA~L~gcNf 208 (302)
T KOG1665|consen 197 NAEGASLKGCNF 208 (302)
T ss_pred ccccccccCcCC
Confidence 344444444444
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.79 E-value=39 Score=39.03 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=23.1
Q ss_pred EeecCcCccccchhhhCCCCCCeEeccCccCc
Q 036656 274 NLGANQFTGPIPASISNASNLMRLGIPMNGFR 305 (367)
Q Consensus 274 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 305 (367)
||++|+|+...+..+..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46778887555556677778888888887765
No 98
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=25.44 E-value=1.1e+02 Score=18.69 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=8.8
Q ss_pred CchhhHHHHHHHHHHH
Q 036656 1 MMSSIIVSICFFIFCC 16 (367)
Q Consensus 1 ~m~~~~~~~~~~~~~~ 16 (367)
||++.+..++.+++..
T Consensus 1 MmKk~i~~i~~~l~~~ 16 (48)
T PRK10081 1 MVKKTIAAIFSVLVLS 16 (48)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 7886665544444433
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.79 E-value=66 Score=37.35 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=23.9
Q ss_pred EeecCcCccccCccccCCCCCCEEECCCCcCcc
Q 036656 225 SFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257 (367)
Q Consensus 225 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 257 (367)
||++|+|+...+..|..+++|++|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 467788875555667777888888888877763
No 100
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=23.63 E-value=52 Score=25.33 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=13.7
Q ss_pred CchhhHHHHHHHHHHHHH
Q 036656 1 MMSSIIVSICFFIFCCFS 18 (367)
Q Consensus 1 ~m~~~~~~~~~~~~~~~~ 18 (367)
||..+++.+++||.++.+
T Consensus 1 MmtcRLLCalLvlaLcCC 18 (143)
T PF01456_consen 1 MMTCRLLCALLVLALCCC 18 (143)
T ss_pred CchHHHHHHHHHHHHHcC
Confidence 999999888777766543
No 101
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=22.75 E-value=2.5e+02 Score=21.28 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=12.3
Q ss_pred CchhhHHHHHHHHHHHHHHhhc
Q 036656 1 MMSSIIVSICFFIFCCFSFSLQ 22 (367)
Q Consensus 1 ~m~~~~~~~~~~~~~~~~~~~~ 22 (367)
||...++.+++-++++.+..++
T Consensus 1 mm~~~l~~l~~~l~~~~L~GCQ 22 (128)
T TIGR01004 1 MMGNILKCIAFGLCCVSLSGCQ 22 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHHcc
Confidence 7887776664444444444444
Done!