Query 036656
Match_columns 367
No_of_seqs 335 out of 4366
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.5E-45 2.6E-49 361.4 23.6 326 27-365 6-388 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 6.8E-45 2.3E-49 324.4 20.2 293 29-326 2-302 (313)
3 4eco_A Uncharacterized protein 100.0 1.3E-43 4.3E-48 345.2 19.4 322 29-364 26-475 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 2E-41 6.9E-46 335.9 20.0 318 28-365 264-716 (876)
5 3rgz_A Protein brassinosteroid 100.0 4E-40 1.4E-44 327.4 23.5 283 76-364 369-723 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 1.9E-37 6.6E-42 290.8 26.5 282 75-363 30-413 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 3.7E-36 1.3E-40 283.7 27.1 278 75-359 32-310 (477)
8 4fcg_A Uncharacterized protein 100.0 3.8E-36 1.3E-40 269.4 16.2 280 28-328 22-314 (328)
9 3t6q_A CD180 antigen; protein- 100.0 1E-34 3.5E-39 281.9 27.0 285 75-365 33-396 (606)
10 1ogq_A PGIP-2, polygalacturona 100.0 7.7E-36 2.6E-40 265.8 14.5 257 99-366 50-312 (313)
11 2id5_A Lingo-1, leucine rich r 100.0 2.1E-34 7.3E-39 271.6 24.8 280 75-361 56-336 (477)
12 3t6q_A CD180 antigen; protein- 100.0 6.4E-34 2.2E-38 276.2 27.6 281 76-365 255-543 (606)
13 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-34 1.7E-38 277.1 25.1 132 75-206 32-164 (606)
14 4eco_A Uncharacterized protein 100.0 1.2E-34 4E-39 282.1 17.4 279 75-366 249-586 (636)
15 3oja_B Anopheles plasmodium-re 100.0 3.9E-33 1.3E-37 269.8 27.1 297 48-359 4-338 (597)
16 1xku_A Decorin; proteoglycan, 100.0 7.5E-33 2.6E-37 248.6 26.7 284 61-356 29-330 (330)
17 3v47_A TOLL-like receptor 5B a 100.0 1E-33 3.5E-38 265.4 21.8 261 99-365 30-367 (455)
18 3o6n_A APL1; leucine-rich repe 100.0 3.9E-33 1.3E-37 256.2 24.7 268 75-358 45-331 (390)
19 2z81_A CD282 antigen, TOLL-lik 100.0 4.7E-34 1.6E-38 274.0 18.9 154 75-228 26-181 (549)
20 2ft3_A Biglycan; proteoglycan, 100.0 7E-33 2.4E-37 249.0 25.0 283 61-356 31-331 (332)
21 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-33 8.7E-38 281.3 23.3 287 63-358 14-375 (844)
22 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-32 4.1E-37 270.7 26.1 289 75-365 25-349 (680)
23 2z7x_B TOLL-like receptor 1, v 100.0 4.5E-33 1.5E-37 265.4 21.8 106 75-183 21-127 (520)
24 4ecn_A Leucine-rich repeat pro 100.0 2.3E-33 8E-38 278.3 20.1 154 75-232 448-632 (876)
25 3vq2_A TLR4, TOLL-like recepto 100.0 8.1E-33 2.8E-37 268.5 23.5 109 75-183 56-165 (606)
26 2z63_A TOLL-like receptor 4, v 100.0 1.5E-32 5E-37 264.8 23.6 110 75-184 52-162 (570)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-32 5.2E-37 264.1 23.0 127 75-207 52-181 (562)
28 2z7x_B TOLL-like receptor 1, v 100.0 3.1E-32 1.1E-36 259.6 23.8 83 75-160 45-128 (520)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.3E-32 2.8E-36 258.9 23.7 277 75-362 76-514 (562)
30 1xku_A Decorin; proteoglycan, 100.0 3.7E-31 1.3E-35 237.6 25.4 273 76-358 32-306 (330)
31 2z80_A TOLL-like receptor 2, v 100.0 1.1E-32 3.9E-37 249.7 15.2 274 56-330 23-316 (353)
32 3o6n_A APL1; leucine-rich repe 100.0 2.7E-31 9.3E-36 244.0 24.4 266 75-360 69-354 (390)
33 4g8a_A TOLL-like receptor 4; l 100.0 4.2E-31 1.4E-35 257.6 26.5 134 75-208 52-186 (635)
34 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-31 8E-36 239.1 21.6 278 76-365 34-316 (332)
35 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-30 5.2E-35 255.8 28.8 279 77-362 250-601 (680)
36 2z66_A Variable lymphocyte rec 100.0 8.1E-32 2.8E-36 239.3 17.7 285 61-366 5-295 (306)
37 2z63_A TOLL-like receptor 4, v 100.0 2.5E-31 8.6E-36 256.1 22.3 87 75-161 76-163 (570)
38 3oja_B Anopheles plasmodium-re 100.0 6E-31 2.1E-35 254.5 24.5 268 75-360 75-360 (597)
39 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-31 7.9E-36 267.1 21.8 277 75-364 48-399 (844)
40 4fmz_A Internalin; leucine ric 100.0 3.5E-30 1.2E-34 232.9 25.5 263 75-362 66-328 (347)
41 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-30 3.6E-35 250.7 22.5 285 62-366 3-407 (549)
42 2z80_A TOLL-like receptor 2, v 100.0 5.4E-31 1.9E-35 238.7 17.7 282 67-362 27-318 (353)
43 4fcg_A Uncharacterized protein 100.0 3.4E-30 1.2E-34 230.7 19.9 235 97-358 79-314 (328)
44 4fmz_A Internalin; leucine ric 100.0 2.3E-29 7.9E-34 227.5 25.0 258 75-358 88-346 (347)
45 2z66_A Variable lymphocyte rec 100.0 2.6E-30 9E-35 229.6 17.7 249 102-361 10-264 (306)
46 3zyi_A Leucine-rich repeat-con 100.0 3.5E-29 1.2E-33 234.3 25.8 245 80-330 59-305 (452)
47 1o6v_A Internalin A; bacterial 100.0 3.5E-29 1.2E-33 235.2 25.1 260 75-359 90-389 (466)
48 1o6v_A Internalin A; bacterial 100.0 4E-29 1.4E-33 234.8 25.1 264 75-362 68-370 (466)
49 3zyi_A Leucine-rich repeat-con 100.0 2E-29 6.7E-34 236.0 22.6 228 75-305 75-303 (452)
50 3zyj_A Leucine-rich repeat-con 100.0 4.6E-29 1.6E-33 232.7 24.8 246 79-330 47-294 (440)
51 1wwl_A Monocyte differentiatio 100.0 3.8E-32 1.3E-36 242.0 2.8 247 97-359 41-310 (312)
52 3zyj_A Leucine-rich repeat-con 100.0 3.4E-29 1.2E-33 233.5 22.8 228 75-305 64-292 (440)
53 1ozn_A Reticulon 4 receptor; N 100.0 3.6E-29 1.2E-33 219.9 21.5 225 78-306 14-239 (285)
54 1ozn_A Reticulon 4 receptor; N 100.0 9.7E-30 3.3E-34 223.6 17.4 225 102-330 14-240 (285)
55 3o53_A Protein LRIM1, AGAP0063 100.0 3.2E-31 1.1E-35 236.5 7.9 271 75-364 10-282 (317)
56 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-28 4.8E-33 229.8 24.6 259 75-359 42-332 (457)
57 1wwl_A Monocyte differentiatio 100.0 1.7E-31 5.9E-36 237.7 2.1 269 53-330 21-311 (312)
58 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-28 9.6E-33 237.6 24.0 285 75-366 76-563 (635)
59 3bz5_A Internalin-J, INLJ; leu 100.0 3.8E-28 1.3E-32 226.8 23.8 269 75-366 85-395 (457)
60 3g06_A SSPH2 (leucine-rich rep 100.0 1E-28 3.5E-33 237.5 16.0 268 53-365 12-304 (622)
61 3o53_A Protein LRIM1, AGAP0063 100.0 7.5E-30 2.6E-34 227.6 7.6 247 100-365 11-258 (317)
62 2o6q_A Variable lymphocyte rec 100.0 3.4E-27 1.2E-31 205.6 22.0 218 60-282 2-219 (270)
63 1jl5_A Outer protein YOPM; leu 100.0 3.9E-27 1.3E-31 219.8 23.0 237 100-366 132-419 (454)
64 3oja_A Leucine-rich immune mol 100.0 1.1E-28 3.9E-33 232.3 11.5 242 93-353 28-270 (487)
65 3oja_A Leucine-rich immune mol 100.0 2.2E-28 7.4E-33 230.4 12.9 233 115-366 22-259 (487)
66 1jl5_A Outer protein YOPM; leu 100.0 4.5E-26 1.5E-30 212.6 26.6 256 75-366 91-380 (454)
67 2z62_A TOLL-like receptor 4, v 99.9 1.7E-26 5.7E-31 201.9 21.5 225 103-332 11-241 (276)
68 2z62_A TOLL-like receptor 4, v 99.9 7E-26 2.4E-30 198.0 21.7 208 99-308 28-240 (276)
69 1z7x_W Ribonuclease inhibitor; 99.9 2.6E-29 8.8E-34 235.9 -1.0 283 76-360 86-413 (461)
70 3rfs_A Internalin B, repeat mo 99.9 1.4E-26 4.8E-31 201.9 15.4 223 100-366 20-243 (272)
71 2o6q_A Variable lymphocyte rec 99.9 9.4E-25 3.2E-29 190.1 24.4 201 126-330 19-220 (270)
72 1z7x_W Ribonuclease inhibitor; 99.9 3.7E-29 1.3E-33 234.8 -5.5 287 75-364 56-393 (461)
73 1p9a_G Platelet glycoprotein I 99.9 1.3E-24 4.3E-29 191.1 20.4 199 75-281 10-208 (290)
74 2ast_B S-phase kinase-associat 99.9 5.9E-27 2E-31 210.7 5.3 267 61-367 35-315 (336)
75 3rfs_A Internalin B, repeat mo 99.9 8E-25 2.7E-29 190.7 18.2 210 95-316 37-247 (272)
76 1p9a_G Platelet glycoprotein I 99.9 2.5E-24 8.7E-29 189.1 21.0 204 94-305 5-208 (290)
77 3goz_A Leucine-rich repeat-con 99.9 6.3E-27 2.1E-31 212.6 2.0 251 80-330 3-299 (362)
78 3goz_A Leucine-rich repeat-con 99.9 8.6E-27 2.9E-31 211.7 2.8 259 103-361 2-300 (362)
79 4glp_A Monocyte differentiatio 99.9 5.6E-25 1.9E-29 195.5 13.4 200 148-359 92-308 (310)
80 2ast_B S-phase kinase-associat 99.9 2.9E-27 1E-31 212.7 -1.8 231 75-310 70-311 (336)
81 3m19_A Variable lymphocyte rec 99.9 6.2E-24 2.1E-28 182.9 18.9 191 61-257 3-193 (251)
82 2ca6_A RAN GTPase-activating p 99.9 6.8E-27 2.3E-31 214.4 -0.3 239 91-330 24-318 (386)
83 4glp_A Monocyte differentiatio 99.9 1.7E-24 5.8E-29 192.4 12.6 227 98-330 63-309 (310)
84 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-23 1.5E-27 198.4 23.3 223 99-366 40-281 (622)
85 2ca6_A RAN GTPase-activating p 99.9 3.9E-26 1.3E-30 209.3 1.0 244 115-361 24-319 (386)
86 2xwt_C Thyrotropin receptor; s 99.9 1.2E-23 4.1E-28 179.8 16.1 199 100-325 32-236 (239)
87 1h6u_A Internalin H; cell adhe 99.9 1.2E-23 4.1E-28 186.5 16.7 195 95-306 37-231 (308)
88 3m19_A Variable lymphocyte rec 99.9 4.3E-23 1.5E-27 177.6 18.4 179 124-330 15-194 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 2.5E-23 8.4E-28 177.8 16.1 197 75-278 31-236 (239)
90 1h6u_A Internalin H; cell adhe 99.9 1.1E-22 3.7E-27 180.4 17.4 191 75-282 41-231 (308)
91 4ay9_X Follicle-stimulating ho 99.9 3.3E-22 1.1E-26 180.6 17.5 244 63-325 9-256 (350)
92 3cvr_A Invasion plasmid antige 99.9 2.5E-22 8.4E-27 191.0 15.6 206 55-291 35-253 (571)
93 2o6s_A Variable lymphocyte rec 99.9 2.8E-22 9.7E-27 167.5 14.1 171 150-330 10-180 (208)
94 2o6s_A Variable lymphocyte rec 99.9 2.5E-21 8.6E-26 161.7 16.2 133 61-208 5-137 (208)
95 4ay9_X Follicle-stimulating ho 99.9 1.1E-21 3.8E-26 177.1 15.1 239 102-355 12-256 (350)
96 3cvr_A Invasion plasmid antige 99.9 2.4E-21 8.3E-26 184.2 15.3 181 124-333 60-248 (571)
97 3ogk_B Coronatine-insensitive 99.9 6.4E-23 2.2E-27 198.3 3.7 278 76-360 165-503 (592)
98 3ogk_B Coronatine-insensitive 99.9 1.4E-22 4.8E-27 195.9 4.7 279 75-360 192-528 (592)
99 3e6j_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 154.0 17.0 163 54-232 10-172 (229)
100 1m9s_A Internalin B; cell inva 99.8 9.5E-20 3.3E-24 175.0 16.5 171 96-281 40-210 (605)
101 2xot_A Amphoterin-induced prot 99.8 1.8E-19 6.2E-24 163.3 16.7 177 102-282 21-203 (361)
102 1h6t_A Internalin B; cell adhe 99.8 1.9E-19 6.5E-24 158.1 16.2 187 128-330 29-215 (291)
103 1h6t_A Internalin B; cell adhe 99.8 8.8E-20 3E-24 160.3 13.7 171 96-281 43-213 (291)
104 2v9t_B SLIT homolog 2 protein 99.8 3.9E-19 1.3E-23 149.5 16.2 152 175-330 15-167 (220)
105 2v9t_B SLIT homolog 2 protein 99.8 4.8E-19 1.6E-23 149.0 16.2 133 99-231 32-164 (220)
106 1m9s_A Internalin B; cell inva 99.8 1.6E-19 5.3E-24 173.5 14.6 190 101-307 23-212 (605)
107 4b8c_D Glucose-repressible alc 99.8 2.3E-21 7.8E-26 190.6 1.3 198 30-239 129-336 (727)
108 2xot_A Amphoterin-induced prot 99.8 4.3E-19 1.5E-23 160.8 15.3 176 79-257 22-203 (361)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-18 3.8E-23 146.8 16.1 155 174-332 14-170 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 8.7E-19 3E-23 147.4 15.4 151 79-232 15-166 (220)
111 3e6j_A Variable lymphocyte rec 99.8 2.1E-18 7.2E-23 146.0 17.4 151 102-256 22-172 (229)
112 4ezg_A Putative uncharacterize 99.8 4.6E-19 1.6E-23 146.6 12.6 152 168-327 41-193 (197)
113 2p1m_B Transport inhibitor res 99.8 4.6E-21 1.6E-25 185.4 -0.3 278 75-360 105-496 (594)
114 2p1m_B Transport inhibitor res 99.8 6.6E-21 2.3E-25 184.3 0.0 135 218-359 371-520 (594)
115 4ezg_A Putative uncharacterize 99.8 1E-18 3.5E-23 144.5 12.8 130 121-256 42-172 (197)
116 1dce_A Protein (RAB geranylger 99.8 1.5E-21 5.1E-26 186.4 -9.4 205 121-352 347-567 (567)
117 1dce_A Protein (RAB geranylger 99.8 5.8E-22 2E-26 189.2 -12.4 203 96-322 346-567 (567)
118 1xeu_A Internalin C; cellular 99.8 2.1E-18 7.3E-23 149.1 10.4 171 97-283 17-187 (263)
119 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.9E-22 144.5 12.3 166 77-257 21-186 (263)
120 1w8a_A SLIT protein; signaling 99.7 2.8E-17 9.4E-22 135.2 11.7 130 126-258 11-141 (192)
121 2ell_A Acidic leucine-rich nuc 99.7 2.8E-17 9.7E-22 132.1 10.7 141 219-366 24-167 (168)
122 4b8c_D Glucose-repressible alc 99.7 1.7E-18 5.8E-23 170.2 4.2 182 99-286 173-359 (727)
123 3sb4_A Hypothetical leucine ri 99.7 1.4E-17 4.8E-22 149.0 7.8 197 146-352 100-328 (329)
124 1w8a_A SLIT protein; signaling 99.7 2.3E-16 7.9E-21 129.6 13.9 128 79-209 12-140 (192)
125 2ell_A Acidic leucine-rich nuc 99.7 7.8E-17 2.7E-21 129.5 10.0 37 124-160 25-62 (168)
126 2je0_A Acidic leucine-rich nuc 99.7 2.2E-16 7.6E-21 124.2 9.4 129 219-353 17-148 (149)
127 2wfh_A SLIT homolog 2 protein 99.7 1.5E-15 5.1E-20 124.8 14.4 108 99-207 31-138 (193)
128 2je0_A Acidic leucine-rich nuc 99.6 4.2E-16 1.4E-20 122.6 9.5 126 195-323 17-148 (149)
129 2o6r_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 120.6 14.8 109 148-256 29-137 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 3E-15 1E-19 123.0 14.1 126 102-231 13-138 (193)
131 3sb4_A Hypothetical leucine ri 99.6 7.7E-16 2.6E-20 137.6 11.3 197 122-322 100-328 (329)
132 2o6r_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 120.3 14.7 111 99-209 28-138 (177)
133 4fdw_A Leucine rich hypothetic 99.6 1.4E-13 4.6E-18 125.9 21.5 261 77-356 115-381 (401)
134 4fdw_A Leucine rich hypothetic 99.6 1.8E-13 6.2E-18 125.1 21.6 242 97-358 111-358 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.6 5.4E-15 1.8E-19 119.7 8.3 129 194-327 18-152 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 8.2E-15 2.8E-19 118.6 9.1 110 143-256 15-126 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 3.2E-17 1.1E-21 135.5 -6.8 137 214-358 43-185 (198)
138 1ds9_A Outer arm dynein; leuci 99.5 2.7E-17 9.2E-22 136.0 -8.9 133 97-234 16-155 (198)
139 3g39_A Variable lymphocyte rec 99.5 5.3E-13 1.8E-17 107.1 12.3 85 99-183 30-114 (170)
140 3g39_A Variable lymphocyte rec 99.5 7.1E-13 2.4E-17 106.4 12.6 37 124-160 31-67 (170)
141 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.6E-17 105.8 12.4 102 79-183 16-117 (174)
142 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 105.3 12.6 37 124-160 34-70 (174)
143 3un9_A NLR family member X1; l 99.4 1.6E-14 5.4E-19 130.8 -0.6 159 171-330 72-254 (372)
144 3un9_A NLR family member X1; l 99.3 3E-14 1E-18 129.0 -4.7 38 268-305 211-252 (372)
145 4fs7_A Uncharacterized protein 99.3 3.2E-10 1.1E-14 103.7 20.2 263 75-355 71-376 (394)
146 2ifg_A High affinity nerve gro 99.2 6.9E-11 2.3E-15 106.2 11.4 108 62-184 7-116 (347)
147 2ifg_A High affinity nerve gro 99.2 6.1E-11 2.1E-15 106.5 10.5 104 103-209 12-117 (347)
148 2ra8_A Uncharacterized protein 99.1 1.7E-11 5.8E-16 110.1 4.3 85 217-303 250-341 (362)
149 4gt6_A Cell surface protein; l 99.1 9E-09 3.1E-13 94.0 22.3 262 77-355 66-367 (394)
150 2ra8_A Uncharacterized protein 99.1 9.6E-11 3.3E-15 105.2 8.3 84 241-326 250-341 (362)
151 4fs7_A Uncharacterized protein 99.1 3.7E-09 1.3E-13 96.6 17.4 250 90-358 62-355 (394)
152 4gt6_A Cell surface protein; l 99.0 2.6E-08 9E-13 90.9 20.0 264 75-357 87-390 (394)
153 4h09_A Hypothetical leucine ri 98.8 7.3E-07 2.5E-11 80.8 22.6 260 76-354 47-342 (379)
154 1io0_A Tropomodulin; LRR prote 98.7 5.3E-09 1.8E-13 84.8 4.0 90 267-358 64-164 (185)
155 3rw6_A Nuclear RNA export fact 98.6 7.3E-10 2.5E-14 94.5 -4.3 24 61-84 76-99 (267)
156 4h09_A Hypothetical leucine ri 98.6 1.2E-05 4.1E-10 72.7 22.0 242 75-329 69-346 (379)
157 1io0_A Tropomodulin; LRR prote 98.6 1.8E-08 6.2E-13 81.7 2.3 116 213-329 30-165 (185)
158 3rw6_A Nuclear RNA export fact 98.4 3E-07 1E-11 78.4 5.9 85 266-351 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 9E-07 3.1E-11 70.1 5.3 13 313-325 137-149 (176)
160 3e4g_A ATP synthase subunit S, 98.2 5.5E-07 1.9E-11 71.3 3.6 84 75-158 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 8.9E-06 3E-10 65.6 3.7 114 241-357 39-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00013 4.3E-09 58.9 3.3 88 266-355 39-136 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0027 9.2E-08 47.6 5.2 55 247-304 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0038 1.3E-07 46.8 5.6 57 222-281 11-68 (130)
165 2lz0_A Uncharacterized protein 53.7 40 0.0014 23.2 6.1 39 116-155 13-51 (100)
166 2lz0_A Uncharacterized protein 43.1 71 0.0024 21.8 6.0 46 87-133 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.5e-45 Score=361.40 Aligned_cols=326 Identities=27% Similarity=0.387 Sum_probs=206.7
Q ss_pred cCCCCHHhHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCccceEecCCCCcEEEEEcCCCCcccc---cC-----------
Q 036656 27 ALKSNETDQLALLEFKAKITYDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGS---LS----------- 92 (367)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~---~~----------- 92 (367)
++...++|+.||++||+++. ||. .+.+|..+.+||.|.||.|+ .++|+.++++++.+.|. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 34457789999999999998 777 88999988899999999998 37999999999998886 43
Q ss_pred ------------ccccCCCCCcEEEccCCCCCCCcch--hhcCCCCCcEEEccCCCCCCCcCccc-cCCCCCCEEEeeCC
Q 036656 93 ------------PHIGNLSFLRVLSLKNNSFRNEIPR--AIGYLFRLRILRLDNNTFGGQIPDNI-SHCIKLESLRLGFN 157 (367)
Q Consensus 93 ------------~~~~~l~~L~~L~l~~~~l~~~~~~--~l~~l~~L~~L~l~~~~l~~~~p~~~-~~l~~L~~L~l~~n 157 (367)
..++++++|++|++++|.+++.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 4567778888888888888877777 78888888888888888877777655 67778888888887
Q ss_pred CCCCCCCCc---CCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 158 ELEGKVPGK---LGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 158 ~~~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
.+++..+.. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..|. +..+++|++|++++|.+++.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 777655544 5556666666666665554332 24555666666666665554444 55556666666666665555
Q ss_pred cCccccCCCCCCEEECCCCcCcccC----------------------ChhhhcCCCCCCEEEeecCcCccccchhhhCCC
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSL----------------------PSDLGFTLPNLEVLNLGANQFTGPIPASISNAS 292 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~----------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 292 (367)
.|..+..+++|++|++++|.+++.+ |..++..+++|++|++++|++++.+|..+..++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 5555555555555555555555444 433332224444444444444444444444444
Q ss_pred CCCeEeccCccCcccCCC--CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCC-CCCEEeCcCCeeeeeCCCCC
Q 036656 293 NLMRLGIPMNGFRGKVPS--FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNAS-RLELLQININNFGGMLPEAV 365 (367)
Q Consensus 293 ~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~g~iP~~~ 365 (367)
+|++|++++|.+++.+|. +..+++|++|++++|++++.+| ..+..++ +|++|++++|+++|.+|+.+
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p------~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP------ESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC------TTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc------HHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 445555544444444442 4444455555555554444422 2233333 55555555555555555544
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.8e-45 Score=324.36 Aligned_cols=293 Identities=30% Similarity=0.529 Sum_probs=229.6
Q ss_pred CCCHHhHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC--ccceEecCCC--CcEEEEEcCCCCccc--ccCccccCCCCCc
Q 036656 29 KSNETDQLALLEFKAKITYDPLEVLSSWNYSRHFCQ--WKGVTCSPRH--QRVTALLLPSLLLQG--SLSPHIGNLSFLR 102 (367)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~~~~--~~v~~l~l~~~~~~~--~~~~~~~~l~~L~ 102 (367)
.|.++|+++|.+||+++. +|. .+.+|..+.++|. |.||.|+... .+|+.++++++.+.+ .+|..+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 478899999999999996 665 6789988889998 9999998654 689999999999998 8888899999999
Q ss_pred EEEccC-CCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccc
Q 036656 103 VLSLKN-NSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSN 181 (367)
Q Consensus 103 ~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (367)
+|++++ |.+++.+|..|.++++|++|++++|.+++.+|..+.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999985 8888888888888999999999988888888888888888888888888888777878888888888888888
Q ss_pred cccccCCCCCCCCC-CCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCC
Q 036656 182 NLSGEIPSSFGNLS-SLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLP 260 (367)
Q Consensus 182 ~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 260 (367)
.+++.+|..+..++ +|++|++++|.+++..|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++..+
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 88777777777776 778888887777777777777665 7777777777776666667777777777777777764444
Q ss_pred hhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCc
Q 036656 261 SDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNH 326 (367)
Q Consensus 261 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 326 (367)
. +. .+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+.+++|+.+++++|+
T Consensus 239 ~-~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 239 K-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp G-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred c-cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 3 22 4666777777777666666666666666666666666666666665566666666666665
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-43 Score=345.20 Aligned_cols=322 Identities=20% Similarity=0.352 Sum_probs=260.4
Q ss_pred CCCHHhHHHHHHHHHhCCCCCCCCC-------CCCCCCCCCCCc---cceEecCCCCcEEEEEcCCCCcccccCccccCC
Q 036656 29 KSNETDQLALLEFKAKITYDPLEVL-------SSWNYSRHFCQW---KGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNL 98 (367)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~-------~~w~~~~~~c~~---~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l 98 (367)
+....|+.||.+++.++.++.|... .+|..+.++|.| .||.|+.. ++|++|+++++++.|.+|+.++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcC
Confidence 3455799999999999986666533 489998999999 99999865 799999999999999999999999
Q ss_pred CCCcEEEccCCC--------------------------------------------------------------------
Q 036656 99 SFLRVLSLKNNS-------------------------------------------------------------------- 110 (367)
Q Consensus 99 ~~L~~L~l~~~~-------------------------------------------------------------------- 110 (367)
++|++|++++|.
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 999999999884
Q ss_pred ----------CCCCcchhhcCCCCCcEEEccCCCCCCC-----------------cCcccc--CCCCCCEEEeeCCCCCC
Q 036656 111 ----------FRNEIPRAIGYLFRLRILRLDNNTFGGQ-----------------IPDNIS--HCIKLESLRLGFNELEG 161 (367)
Q Consensus 111 ----------l~~~~~~~l~~l~~L~~L~l~~~~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~~~~ 161 (367)
+++ +|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+
T Consensus 185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 334 788899999999999999999975 999998 99999999999999999
Q ss_pred CCCCcCCCCCCCcEEEccccc-ccc-cCCCCCCCC------CCCCEEEcccCcCcccCCc--ccCCCCCCCEEEeecCcC
Q 036656 162 KVPGKLGSLPKLRILVIHSNN-LSG-EIPSSFGNL------SSLQVLSASANQFVGQIPA--TLSELKRMRYISFGGNKL 231 (367)
Q Consensus 162 ~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~n~~ 231 (367)
.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .+..+++|++|++++|.+
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 999999999999999999998 887 778777665 89999999999998 7787 889999999999999999
Q ss_pred ccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCC-CCEEEeecCcCccccchhhhCCC--CCCeEeccCccCcccC
Q 036656 232 SGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPN-LEVLNLGANQFTGPIPASISNAS--NLMRLGIPMNGFRGKV 308 (367)
Q Consensus 232 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~ 308 (367)
+|.+| .+..+++|++|++++|.++ .+|..+. .+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.+
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred ccchh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 88888 7777888888888888877 6776655 4677 888888888877 6666555433 6777777777777766
Q ss_pred CC-CC-------CCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCC
Q 036656 309 PS-FG-------NLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEA 364 (367)
Q Consensus 309 ~~-~~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~ 364 (367)
|. +. .+++|+.|++++|+++.. | ...+..+++|+.|++++|+++ .+|..
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p-----~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 475 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKF-P-----KELFSTGSPLSSINLMGNMLT-EIPKN 475 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSC-C-----THHHHTTCCCSEEECCSSCCS-BCCSS
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcC-C-----HHHHccCCCCCEEECCCCCCC-CcCHH
Confidence 55 55 566677777777776643 2 122334555666666666655 55544
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-41 Score=335.91 Aligned_cols=318 Identities=21% Similarity=0.324 Sum_probs=254.3
Q ss_pred CCCCHHhHHHHHHHHHhCCCCCCCCCCCCCCCC-----CC--CCc------------cceEecCCCCcEEEEEcCCCCcc
Q 036656 28 LKSNETDQLALLEFKAKITYDPLEVLSSWNYSR-----HF--CQW------------KGVTCSPRHQRVTALLLPSLLLQ 88 (367)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~~~c~~~~~~v~~l~l~~~~~~ 88 (367)
+++...|+.||.+|++++. +| +|..+. ++ |.| .||.|+. .++|+.|+|+++++.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 3456689999999999996 44 565443 55 999 9999986 379999999999999
Q ss_pred cccCccccCCCCCcEEEc-cCCCCCCC-----------------------------------------------------
Q 036656 89 GSLSPHIGNLSFLRVLSL-KNNSFRNE----------------------------------------------------- 114 (367)
Q Consensus 89 ~~~~~~~~~l~~L~~L~l-~~~~l~~~----------------------------------------------------- 114 (367)
|.+|+.++++++|++|+| ++|.++|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 66643332
Q ss_pred -----------------------cchhhcCCCCCcEEEccCCCCCC-----------------CcCcccc--CCCCCCEE
Q 036656 115 -----------------------IPRAIGYLFRLRILRLDNNTFGG-----------------QIPDNIS--HCIKLESL 152 (367)
Q Consensus 115 -----------------------~~~~l~~l~~L~~L~l~~~~l~~-----------------~~p~~~~--~l~~L~~L 152 (367)
+|..++++++|++|++++|.+++ .+|..++ ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 78889999999999999999997 3899887 99999999
Q ss_pred EeeCCCCCCCCCCcCCCCCCCcEEEccccc-ccc-cCCCCCC-------CCCCCCEEEcccCcCcccCCc--ccCCCCCC
Q 036656 153 RLGFNELEGKVPGKLGSLPKLRILVIHSNN-LSG-EIPSSFG-------NLSSLQVLSASANQFVGQIPA--TLSELKRM 221 (367)
Q Consensus 153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~--~l~~~~~L 221 (367)
++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++ .+++|++|++++|.++ .+|. .+..+++|
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L 575 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKL 575 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTC
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCC
Confidence 999999999999999999999999999998 887 6665444 4459999999999998 7887 89999999
Q ss_pred CEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCC-CCEEEeecCcCccccchhhhCCC--CCCeEe
Q 036656 222 RYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPN-LEVLNLGANQFTGPIPASISNAS--NLMRLG 298 (367)
Q Consensus 222 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~ 298 (367)
+.|++++|.++ .+| .+..+++|++|++++|.++ .+|..+. .+++ |++|++++|.++ .+|..+..++ +|+.|+
T Consensus 576 ~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 576 GLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 99999999998 777 8888999999999999998 7887766 5777 999999999988 6777665554 388888
Q ss_pred ccCccCcccCCCCC------CCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCC
Q 036656 299 IPMNGFRGKVPSFG------NLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAV 365 (367)
Q Consensus 299 l~~n~~~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~ 365 (367)
+++|.+.+.+|.+. .+++|+.|++++|+++.. | ...+..+++|+.|+|++|+++ .+|.++
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p-----~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-P-----TELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-C-----HHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-C-----HHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 88888877665422 334666677776666632 1 122234555566666665555 555543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-40 Score=327.39 Aligned_cols=283 Identities=28% Similarity=0.463 Sum_probs=252.9
Q ss_pred cEEEEEcCCCCcccccCccccC--CCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEE
Q 036656 76 RVTALLLPSLLLQGSLSPHIGN--LSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLR 153 (367)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~ 153 (367)
.++.+++++|.+.+.++..+.. ++.|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 5566666666666666666555 67888888888888888888999999999999999999988999999999999999
Q ss_pred eeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcc
Q 036656 154 LGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG 233 (367)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 233 (367)
+++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 99999998899999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCCCEEECCCCcCcccCChhhhc------------------------------------------------
Q 036656 234 EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGF------------------------------------------------ 265 (367)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~------------------------------------------------ 265 (367)
.+|..+..+++|++|++++|.++|.+|..++.
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 99999999999999999999998888865532
Q ss_pred ---------------------CCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEcc
Q 036656 266 ---------------------TLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIIS 323 (367)
Q Consensus 266 ---------------------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~ 323 (367)
.+++|++|++++|+++|.+|..++.+++|+.|++++|+++|.+|. ++.+++|+.|||+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 146789999999999999999999999999999999999999998 9999999999999
Q ss_pred CCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCC
Q 036656 324 MNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEA 364 (367)
Q Consensus 324 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~ 364 (367)
+|+++|. +|..+.++++|++||+++|+++|.||+.
T Consensus 689 ~N~l~g~------ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 689 SNKLDGR------IPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SSCCEEC------CCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCcccCc------CChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999998 5567788999999999999999999974
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-37 Score=290.77 Aligned_cols=282 Identities=20% Similarity=0.213 Sum_probs=229.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCc-chhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEE
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEI-PRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLR 153 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~ 153 (367)
.+++.++++++.+.+..+..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57899999999999888888999999999999999887554 56788899999999999998877788888888999999
Q ss_pred eeCCCCCCCCCCc--CCCCCCCcEEEcccccccccCCCC-CCCCCCCCEEEcccCcCcccCCcccCCC------------
Q 036656 154 LGFNELEGKVPGK--LGSLPKLRILVIHSNNLSGEIPSS-FGNLSSLQVLSASANQFVGQIPATLSEL------------ 218 (367)
Q Consensus 154 l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~~------------ 218 (367)
+++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9988887644433 778888888888888888666655 6778888888888887765544332211
Q ss_pred --------------------------------------------------------------------------------
Q 036656 219 -------------------------------------------------------------------------------- 218 (367)
Q Consensus 219 -------------------------------------------------------------------------------- 218 (367)
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence
Q ss_pred -----CCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCC
Q 036656 219 -----KRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASN 293 (367)
Q Consensus 219 -----~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 293 (367)
++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhcCccc
Confidence 3566666666666666677788889999999999999866665655 6899999999999998777888889999
Q ss_pred CCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCC
Q 036656 294 LMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPE 363 (367)
Q Consensus 294 L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~ 363 (367)
|++|++++|.+++..+. +..+++|++|++++|++++.. +..+..+++|+.|++++|++++.+|.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP------DGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCC------HhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999988776 899999999999999998762 34567899999999999999999983
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=283.69 Aligned_cols=278 Identities=18% Similarity=0.137 Sum_probs=224.8
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.|+++++.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999999988889999999999999999999888999999999999999999999555566889999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999988888899999999999999999887788899999999999999999876667788899999999999998877
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCC
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGN 313 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~ 313 (367)
.+..+..+++|++|++++|...+.++...+ ...+|++|++++|++++..+..+..+++|+.|++++|.+++..+. +..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 777788888888888888776666666554 345777777777777644334566677777777777777665555 666
Q ss_pred CCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeee
Q 036656 314 LHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGG 359 (367)
Q Consensus 314 ~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g 359 (367)
+++|+.|++++|++++. .+..+..+++|+.|+|++|++++
T Consensus 271 l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVV------EPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp CTTCCEEECCSSCCSEE------CTTTBTTCTTCCEEECCSSCCSC
T ss_pred cccCCEEECCCCccceE------CHHHhcCcccCCEEECCCCcCce
Confidence 77777777777776665 23445566666666666666664
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.8e-36 Score=269.37 Aligned_cols=280 Identities=18% Similarity=0.219 Sum_probs=178.8
Q ss_pred CCCCHHhHHHHHHHHHhCCCCCCCCCCCC----CCCCCCCCccceEecC--------CCCcEEEEEcCCCCcccccCccc
Q 036656 28 LKSNETDQLALLEFKAKITYDPLEVLSSW----NYSRHFCQWKGVTCSP--------RHQRVTALLLPSLLLQGSLSPHI 95 (367)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~c~~--------~~~~v~~l~l~~~~~~~~~~~~~ 95 (367)
.....+|+.+|.+|++.+..++......| ....++|.|.|+.|.. ...+++.++++++.+. .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 34566899999999998876776667788 4567899999999952 2256777777777776 566667
Q ss_pred cCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcE
Q 036656 96 GNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRI 175 (367)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 175 (367)
.++++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~------ 172 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS------ 172 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE------
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh------
Confidence 77777777777777777 67777777777777777777777 66777777777777777776666666655432
Q ss_pred EEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcC
Q 036656 176 LVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQL 255 (367)
Q Consensus 176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 255 (367)
. ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 173 ~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 173 T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTT
T ss_pred c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcc
Confidence 0 00111223555555555555555 44555555555666666665555 2444455556666666666555
Q ss_pred cccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCC
Q 036656 256 RGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLG 328 (367)
Q Consensus 256 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~ 328 (367)
.+.+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|. ++.+++++.+++..+.+.
T Consensus 242 ~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 242 LRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 555555444 456666666666655555665566666666666666666665555 666666666666655443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-34 Score=281.87 Aligned_cols=285 Identities=22% Similarity=0.169 Sum_probs=212.0
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57899999999999988889999999999999999999888899999999999999999999788889999999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCC--EEEeecCcCc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMR--YISFGGNKLS 232 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~--~L~l~~n~~~ 232 (367)
++|.+++..+..+..+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999976677889999999999999998864434455588999999998888766666666666666 5666666554
Q ss_pred ccc---------------------------------------------------------------------------Cc
Q 036656 233 GEI---------------------------------------------------------------------------PF 237 (367)
Q Consensus 233 ~~~---------------------------------------------------------------------------~~ 237 (367)
+.. +.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 322 22
Q ss_pred cccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC--CCCCC
Q 036656 238 SIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS--FGNLH 315 (367)
Q Consensus 238 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 315 (367)
.+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. +..++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 3555667777777777776 5666554 567777777777777765566666777777777777776655443 66677
Q ss_pred CCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCC
Q 036656 316 KLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAV 365 (367)
Q Consensus 316 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~ 365 (367)
+|+.|++++|.+++... .+..+..+++|++|++++|.+++..|..|
T Consensus 351 ~L~~L~l~~n~l~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDC----CNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp TCCEEECCSSCCCEEEE----STTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred cCCEEECCCCccccccC----cchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 77777777776665421 12334455555555555555555555444
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.7e-36 Score=265.83 Aligned_cols=257 Identities=24% Similarity=0.363 Sum_probs=234.1
Q ss_pred CCCcEEEccCCCCCC--CcchhhcCCCCCcEEEccC-CCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcE
Q 036656 99 SFLRVLSLKNNSFRN--EIPRAIGYLFRLRILRLDN-NTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRI 175 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~-~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 175 (367)
.++++|+++++.+++ .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999998 8999999999999999995 9999899999999999999999999999889999999999999
Q ss_pred EEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCC-CCCEEEeecCcCccccCccccCCCCCCEEECCCCc
Q 036656 176 LVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELK-RMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQ 254 (367)
Q Consensus 176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 254 (367)
|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999988999999999999999999999989999999998 999999999999999999999887 9999999999
Q ss_pred CcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCC
Q 036656 255 LRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKD 333 (367)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~ 333 (367)
+++..|..+. .+++|++|++++|.+++..+. +..+++|++|++++|.+++.+|. +..+++|+.|++++|++++.+|.
T Consensus 209 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 209 LEGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEECCGGGCC-TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccCcCCHHHh-cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 9977776665 799999999999999976665 78899999999999999988887 99999999999999999998653
Q ss_pred chhhhhhhcCCCCCCEEeCcCCe-eeeeCCCCCC
Q 036656 334 DLEFVNSLVNASRLELLQININN-FGGMLPEAVG 366 (367)
Q Consensus 334 ~~~~~~~l~~~~~L~~L~l~~n~-l~g~iP~~~~ 366 (367)
. ..+++|+.+++++|+ +.|. |...|
T Consensus 287 ------~-~~l~~L~~l~l~~N~~lc~~-p~~~C 312 (313)
T 1ogq_A 287 ------G-GNLQRFDVSAYANNKCLCGS-PLPAC 312 (313)
T ss_dssp ------S-TTGGGSCGGGTCSSSEEEST-TSSCC
T ss_pred ------C-ccccccChHHhcCCCCccCC-CCCCC
Confidence 2 567889999999996 6764 43345
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=271.63 Aligned_cols=280 Identities=18% Similarity=0.138 Sum_probs=253.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.|++++|.+.+..+..+.++++|++|++++|.++...+..|.++++|++|++++|.+.+..|..|..+++|++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 68999999999999999999999999999999999999666667899999999999999999888889999999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 99999988888999999999999999999865556688999999999999999988888899999999999999988878
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCC
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGN 313 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~ 313 (367)
++.......+|++|++++|.++ .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+. +..
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred cCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 8877777779999999999998 67765555799999999999999977777789999999999999999998777 999
Q ss_pred CCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeC
Q 036656 314 LHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGML 361 (367)
Q Consensus 314 ~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~i 361 (367)
+++|+.|++++|++++. .+..+..+++|+.|++++|+++...
T Consensus 295 l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTL------EESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CTTCCEEECCSSCCSCC------CGGGBSCGGGCCEEECCSSCEECSG
T ss_pred cccCCEEECCCCcCcee------CHhHcCCCcccCEEEccCCCccCcc
Confidence 99999999999999986 3456778899999999999998653
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.4e-34 Score=276.23 Aligned_cols=281 Identities=22% Similarity=0.224 Sum_probs=237.9
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEee
Q 036656 76 RVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLG 155 (367)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~ 155 (367)
.++.++++++.+.+..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7899999999999888888999999999999999998 788889999999999999999987778888999999999999
Q ss_pred CCCCCCCCCC-cCCCCCCCcEEEcccccccccC--CCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCc
Q 036656 156 FNELEGKVPG-KLGSLPKLRILVIHSNNLSGEI--PSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLS 232 (367)
Q Consensus 156 ~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 232 (367)
+|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 9988866554 4888999999999999887654 677888999999999999988888888888999999999999888
Q ss_pred cccCc-cccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccc---cchhhhCCCCCCeEeccCccCcccC
Q 036656 233 GEIPF-SIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGP---IPASISNASNLMRLGIPMNGFRGKV 308 (367)
Q Consensus 233 ~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~~~~~~ 308 (367)
+..+. .+..+++|++|++++|.+++..+..+. .+++|++|++++|++++. .+..+..+++|++|++++|.+++..
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 66554 478889999999999998866666555 688999999999988753 2245788899999999999998887
Q ss_pred CC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCC
Q 036656 309 PS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAV 365 (367)
Q Consensus 309 ~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~ 365 (367)
|. ++.+++|+.|++++|++++. .+..+.++++| .|++++|++++..|+.|
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~------~~~~l~~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSS------SIEALSHLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGG------GGGGGTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred hhhhccccCCCEEECCCCccCcC------ChhHhCccccc-EEECcCCcccccCHhhc
Confidence 76 88899999999999998887 55677788888 88888888887666544
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-34 Score=277.05 Aligned_cols=132 Identities=24% Similarity=0.189 Sum_probs=69.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 34555555555555555555555555555555555555444555555555555555555555444555555555555555
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccc-cCCCCCCCCCCCCEEEcccCc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSG-EIPSSFGNLSSLQVLSASANQ 206 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~ 206 (367)
++|.+++..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 5555554443444555555555555554442 234444444444444444443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-34 Score=282.11 Aligned_cols=279 Identities=22% Similarity=0.283 Sum_probs=191.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCC-CCC-CcchhhcCC------CCCcEEEccCCCCCCCcCc--ccc
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNS-FRN-EIPRAIGYL------FRLRILRLDNNTFGGQIPD--NIS 144 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~-~~~~~l~~l------~~L~~L~l~~~~l~~~~p~--~~~ 144 (367)
.+++.+++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .+.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 578899999999999999999999999999999998 888 788888776 89999999999988 8888 888
Q ss_pred CCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCC-CCEEEcccCcCcccCCcccCCCC--CC
Q 036656 145 HCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSS-LQVLSASANQFVGQIPATLSELK--RM 221 (367)
Q Consensus 145 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~l~~~~--~L 221 (367)
++++|++|++++|.+++.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 89999999999998887777 7777778888888888777 66777777777 777777777776 5565555433 66
Q ss_pred CEEEeecCcCccccCcccc-------CCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCcc------------
Q 036656 222 RYISFGGNKLSGEIPFSIY-------NLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTG------------ 282 (367)
Q Consensus 222 ~~L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------ 282 (367)
++|++++|.+.+..|..+. .+++|++|++++|.++ .+|..++..+++|++|++++|+++.
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 6667766666665555555 4555666666666555 4454444334555555555554441
Q ss_pred ------------------ccchhhh--CCCCCCeEeccCccCcccCCC-CCCCCCCCEEEc------cCCcCCCcCCCch
Q 036656 283 ------------------PIPASIS--NASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVII------SMNHLGNGEKDDL 335 (367)
Q Consensus 283 ------------------~~~~~l~--~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l------~~n~l~~~~~~~~ 335 (367)
.+|..+. .+++|++|++++|++++ +|. +..+++|+.|++ ++|++.+.
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~----- 557 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE----- 557 (636)
T ss_dssp CTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-----
T ss_pred ccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc-----
Confidence 3444443 45555555555555554 333 445555555555 23444444
Q ss_pred hhhhhhcCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 336 EFVNSLVNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 336 ~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
+|..+..+++|++|++++|++ +.||+.++
T Consensus 558 -~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 558 -WPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp -CCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred -ChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 334555667777777777777 57776543
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-33 Score=269.77 Aligned_cols=297 Identities=19% Similarity=0.143 Sum_probs=211.7
Q ss_pred CCCCCCCCCCCCCCCCC----ccceEecC------CC----------CcEEEEEcCCCCcccccCccccCCCCCcEEEcc
Q 036656 48 DPLEVLSSWNYSRHFCQ----WKGVTCSP------RH----------QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLK 107 (367)
Q Consensus 48 ~~~~~~~~w~~~~~~c~----~~~~~c~~------~~----------~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 107 (367)
+.+..+..|.++.+||. |..+.|+. .. .+++.++++++.+....+..+..+++|++|+++
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~ 83 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT
T ss_pred cccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC
Confidence 44455678887766663 54444331 00 356778888888877666678889999999999
Q ss_pred CCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccC
Q 036656 108 NNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEI 187 (367)
Q Consensus 108 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 187 (367)
+|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|..+++|++|++++|.+.+..
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 99999777778999999999999999999777778899999999999999998665566789999999999999998877
Q ss_pred CCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcc------------------ccCccccCCCCCCEEE
Q 036656 188 PSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG------------------EIPFSIYNLSTLSDFH 249 (367)
Q Consensus 188 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~------------------~~~~~l~~~~~L~~L~ 249 (367)
|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+.+ .++.. ..++|+.|+
T Consensus 164 ~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~ 238 (597)
T 3oja_B 164 DDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILK 238 (597)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEE
T ss_pred hhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEE
Confidence 888999999999999999887643 2334444444444444432 11111 124677777
Q ss_pred CCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCC
Q 036656 250 FPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGN 329 (367)
Q Consensus 250 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 329 (367)
+++|.+++ +..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++....+..+++|+.|+|++|+++.
T Consensus 239 L~~n~l~~--~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~ 315 (597)
T 3oja_B 239 LQHNNLTD--TAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 315 (597)
T ss_dssp CCSSCCCC--CGGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred CCCCCCCC--Chhhc-cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc
Confidence 77777764 23333 5778888888888887777777777888888888888877654446667788888888887774
Q ss_pred cCCCchhhhhhhcCCCCCCEEeCcCCeeee
Q 036656 330 GEKDDLEFVNSLVNASRLELLQININNFGG 359 (367)
Q Consensus 330 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g 359 (367)
++..+..+++|+.|+|++|.+++
T Consensus 316 -------i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 316 -------VERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp -------CGGGHHHHTTCSEEECCSSCCCC
T ss_pred -------cCcccccCCCCCEEECCCCCCCC
Confidence 23344556666666666666653
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=7.5e-33 Score=248.63 Aligned_cols=284 Identities=19% Similarity=0.261 Sum_probs=226.9
Q ss_pred CCCCccceEecCCC---------CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 036656 61 HFCQWKGVTCSPRH---------QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLD 131 (367)
Q Consensus 61 ~~c~~~~~~c~~~~---------~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 131 (367)
..|.|+.+.|.... ..++.++++++.+++..+..+.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45778888886422 478889999999988877788999999999999999987778889999999999999
Q ss_pred CCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccc--cCCCCCCCCCCCCEEEcccCcCcc
Q 036656 132 NNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSG--EIPSSFGNLSSLQVLSASANQFVG 209 (367)
Q Consensus 132 ~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~ 209 (367)
+|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99988 6676554 789999999999887666678889999999999998853 556778888999999999998874
Q ss_pred cCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhh
Q 036656 210 QIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASIS 289 (367)
Q Consensus 210 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 289 (367)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|+++ .+|..+.
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhc
Confidence 444433 7899999999999877788888999999999999998865554554 6889999999999998 7788888
Q ss_pred CCCCCCeEeccCccCcccCCC-CC------CCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCe
Q 036656 290 NASNLMRLGIPMNGFRGKVPS-FG------NLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININN 356 (367)
Q Consensus 290 ~l~~L~~L~l~~n~~~~~~~~-~~------~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 356 (367)
.+++|++|++++|.+++..+. +. ..+.++.|++++|++..... .+..+..+.+++.+++++|+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i----~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI----QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS----CGGGGTTCCCGGGEEC----
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccccc----CccccccccceeEEEecccC
Confidence 899999999999999876554 43 24778899999998864211 33567778889999999885
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-33 Score=265.41 Aligned_cols=261 Identities=20% Similarity=0.283 Sum_probs=182.6
Q ss_pred CCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCc-CccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEE
Q 036656 99 SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQI-PDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILV 177 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 177 (367)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 68999999999999878999999999999999999987555 56799999999999999999988889999999999999
Q ss_pred cccccccccCCC--CCCCCCCCCEEEcccCcCcccCCcc-cCCCCCCCEEEeecCcCccccCccccCC------------
Q 036656 178 IHSNNLSGEIPS--SFGNLSSLQVLSASANQFVGQIPAT-LSELKRMRYISFGGNKLSGEIPFSIYNL------------ 242 (367)
Q Consensus 178 l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~l~~~------------ 242 (367)
+++|.+++..+. .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 999999865444 3889999999999999999877765 7899999999999999987666544332
Q ss_pred ----------------------CCCCEEECCCCcCcccCChhhhc-----------------------------------
Q 036656 243 ----------------------STLSDFHFPFNQLRGSLPSDLGF----------------------------------- 265 (367)
Q Consensus 243 ----------------------~~L~~L~l~~n~~~~~~~~~~~~----------------------------------- 265 (367)
++|++|++++|.+++..|..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 45677777777665433332210
Q ss_pred ---CCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhh
Q 036656 266 ---TLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSL 341 (367)
Q Consensus 266 ---~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l 341 (367)
..++|++|++++|.+.+..|..+..+++|++|++++|.+++..+. +..+++|+.|++++|.+++. .+..+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~ 343 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI------DSRMF 343 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CGGGG
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc------ChhHh
Confidence 013455555555555544444455555555555555555544443 44555555555555555443 22333
Q ss_pred cCCCCCCEEeCcCCeeeeeCCCCC
Q 036656 342 VNASRLELLQININNFGGMLPEAV 365 (367)
Q Consensus 342 ~~~~~L~~L~l~~n~l~g~iP~~~ 365 (367)
..+++|++|++++|++++..|.+|
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTT
T ss_pred cCcccCCEEECCCCcccccChhhc
Confidence 344444444444444444444433
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-33 Score=256.24 Aligned_cols=268 Identities=20% Similarity=0.156 Sum_probs=196.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 46778888888877665556788999999999999998766778899999999999999998777777889999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEe--------
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISF-------- 226 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l-------- 226 (367)
++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.. +..+++|+.|++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccccc
Confidence 999988554455688999999999999988777777888999999999999887542 233444444444
Q ss_pred -----------ecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCC
Q 036656 227 -----------GGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLM 295 (367)
Q Consensus 227 -----------~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 295 (367)
++|.+... +. ...++|++|++++|.+++. ..+. .+++|++|++++|.+++..|..+..+++|+
T Consensus 202 ~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHc-CCCCccEEECCCCcCCCcChhHccccccCC
Confidence 44444322 11 1235677777777777632 2333 577888888888888766677777778888
Q ss_pred eEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeee
Q 036656 296 RLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 296 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
+|++++|++++....+..+++|+.|++++|+++.. +..+..+++|+.|++++|+++
T Consensus 276 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-------ERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp EEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC-------GGGHHHHTTCSEEECCSSCCC
T ss_pred EEECCCCcCcccCcccCCCCCCCEEECCCCcceec-------CccccccCcCCEEECCCCccc
Confidence 88888887776544466777888888888877753 333445666777777777666
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.7e-34 Score=273.96 Aligned_cols=154 Identities=20% Similarity=0.139 Sum_probs=127.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+++..+..+.++++|++|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47999999999999888889999999999999999999877788999999999999999999766667999999999999
Q ss_pred eCCCCCC-CCCCcCCCCCCCcEEEcccccccccCC-CCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeec
Q 036656 155 GFNELEG-KVPGKLGSLPKLRILVIHSNNLSGEIP-SSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGG 228 (367)
Q Consensus 155 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 228 (367)
++|.+++ ..|..+..+++|++|++++|...+.++ ..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 9999886 356778899999999999998444554 5788899999999999998877777665544433333333
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=7e-33 Score=249.03 Aligned_cols=283 Identities=22% Similarity=0.248 Sum_probs=235.9
Q ss_pred CCCCccceEecCCC---------CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 036656 61 HFCQWKGVTCSPRH---------QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLD 131 (367)
Q Consensus 61 ~~c~~~~~~c~~~~---------~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 131 (367)
..|.|+.+.|.... .+++.++++++.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 44788888886432 478999999999998888889999999999999999998788999999999999999
Q ss_pred CCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccc--cCCCCCCCCCCCCEEEcccCcCcc
Q 036656 132 NNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSG--EIPSSFGNLSSLQVLSASANQFVG 209 (367)
Q Consensus 132 ~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~ 209 (367)
+|.++ .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 6777665 899999999999997666678999999999999999863 566777777 99999999999985
Q ss_pred cCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhh
Q 036656 210 QIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASIS 289 (367)
Q Consensus 210 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 289 (367)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|+++ .+|..+.
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhhh
Confidence 555443 7999999999999987778899999999999999999865554554 6899999999999998 7888899
Q ss_pred CCCCCCeEeccCccCcccCCC-CCC------CCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCe
Q 036656 290 NASNLMRLGIPMNGFRGKVPS-FGN------LHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININN 356 (367)
Q Consensus 290 ~l~~L~~L~l~~n~~~~~~~~-~~~------~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 356 (367)
.+++|++|++++|.+++..+. +.. .+.|+.|++++|++..... .+..+..+++|+.+++++|+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~----~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV----QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS----CGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc----Ccccccccchhhhhhccccc
Confidence 999999999999999976554 443 4679999999999873211 34667789999999999984
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=281.27 Aligned_cols=287 Identities=23% Similarity=0.245 Sum_probs=201.7
Q ss_pred CCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCc-chhhcCCCCCcEEEccCCCCCCCcCc
Q 036656 63 CQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEI-PRAIGYLFRLRILRLDNNTFGGQIPD 141 (367)
Q Consensus 63 c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~~p~ 141 (367)
|.|..+.+ ...+++.|++++|.+++..+..+.++++|++|++++|...+.+ |..|.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666666 2368999999999999999999999999999999999766565 78899999999999999999988899
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCCc--CCCCCCCcEEEcccccccccCC-CCCCCCCCCCEEEcccCcCcccCCcccCCC
Q 036656 142 NISHCIKLESLRLGFNELEGKVPGK--LGSLPKLRILVIHSNNLSGEIP-SSFGNLSSLQVLSASANQFVGQIPATLSEL 218 (367)
Q Consensus 142 ~~~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~ 218 (367)
.|.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998766654 8899999999999999986644 468899999999999999877666655544
Q ss_pred --CCCCEEEeecCcCccccCccccCC------------------------------------------------------
Q 036656 219 --KRMRYISFGGNKLSGEIPFSIYNL------------------------------------------------------ 242 (367)
Q Consensus 219 --~~L~~L~l~~n~~~~~~~~~l~~~------------------------------------------------------ 242 (367)
++|+.|++++|.+.+..+..+..+
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 555555555555544443333332
Q ss_pred --------------CCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccC
Q 036656 243 --------------STLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKV 308 (367)
Q Consensus 243 --------------~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 308 (367)
++|++|++++|.+.+..+..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 3455555555555433333222 4555666666666555554555555556666666666655544
Q ss_pred CC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeee
Q 036656 309 PS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 309 ~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
+. +..+++|+.|++++|++++.. +..+..+++|+.|++++|.++
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQ------DQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCC------SSCSCSCCCCCEEEEETCCSC
T ss_pred HHHhcCCCCCCEEECCCCCCCccC------hhhhcCCCCCCEEECCCCCCC
Confidence 44 555666666666666555442 233455666666666666655
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-32 Score=270.75 Aligned_cols=289 Identities=18% Similarity=0.170 Sum_probs=220.1
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+.+..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 58999999999999988888999999999999999999888999999999999999999999544457999999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccC--CCCCCCEEEeecCcCc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLS--ELKRMRYISFGGNKLS 232 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~~~~L~~L~l~~n~~~ 232 (367)
++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999977778899999999999999999988888889999999999999999876665543 4588999999999888
Q ss_pred cccCccccCC---------------------------CCCCEEECCCCcCcccCChhhhcCC--CCCCEEEeecCcCccc
Q 036656 233 GEIPFSIYNL---------------------------STLSDFHFPFNQLRGSLPSDLGFTL--PNLEVLNLGANQFTGP 283 (367)
Q Consensus 233 ~~~~~~l~~~---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~ 283 (367)
+..+..+..+ ++|++|++++|.+++..|..+. .+ ++|++|++++|++++.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 7666555433 4566677777766655554443 23 3477777777777766
Q ss_pred cchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhh----hhhcCCCCCCEEeCcCCeee
Q 036656 284 IPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFV----NSLVNASRLELLQININNFG 358 (367)
Q Consensus 284 ~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~n~l~ 358 (367)
.+..+..+++|++|++++|.+.+..+. +..+++|+.|++++|...+.++.. .++ ..+..+++|++|++++|.++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-SLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc-cccccChhhcccCCCCCEEECCCCccC
Confidence 666677777777777777777766665 666666776666665444321100 011 13455666666666666666
Q ss_pred eeCCCCC
Q 036656 359 GMLPEAV 365 (367)
Q Consensus 359 g~iP~~~ 365 (367)
+..|..|
T Consensus 343 ~~~~~~~ 349 (680)
T 1ziw_A 343 GIKSNMF 349 (680)
T ss_dssp CCCTTTT
T ss_pred CCChhHh
Confidence 6555544
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=265.41 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=59.1
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.+++++|.+.+..+..+.++++|++|++++|++++..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 34555666666555555555555666666666666655545555555666666666665555 44443 4555555555
Q ss_pred eCCCCCC-CCCCcCCCCCCCcEEEcccccc
Q 036656 155 GFNELEG-KVPGKLGSLPKLRILVIHSNNL 183 (367)
Q Consensus 155 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~ 183 (367)
++|.+++ ..|..++.+++|++|++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cCCccccccchhhhccCCcceEEEecCccc
Confidence 5555554 2344555555555555555544
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-33 Score=278.29 Aligned_cols=154 Identities=22% Similarity=0.324 Sum_probs=109.0
Q ss_pred CcEEEEEcCCCCccc-----------------ccCcccc--CCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCC-
Q 036656 75 QRVTALLLPSLLLQG-----------------SLSPHIG--NLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNT- 134 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~- 134 (367)
.+++.|++++|.++| .+|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 578888888888887 3777776 88888888888888888888888888888888888887
Q ss_pred CCC-CcCccccCC-------CCCCEEEeeCCCCCCCCCC--cCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEccc
Q 036656 135 FGG-QIPDNISHC-------IKLESLRLGFNELEGKVPG--KLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASA 204 (367)
Q Consensus 135 l~~-~~p~~~~~l-------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 204 (367)
+++ .+|..+..+ ++|++|++++|.++ .+|. .+..+++|++|++++|.+. .+| .+..+++|++|++++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence 776 566544433 37777777777777 5666 6667777777777777666 555 566666666666666
Q ss_pred CcCcccCCcccCCCCC-CCEEEeecCcCc
Q 036656 205 NQFVGQIPATLSELKR-MRYISFGGNKLS 232 (367)
Q Consensus 205 n~~~~~~~~~l~~~~~-L~~L~l~~n~~~ 232 (367)
|.++ .+|..+..+++ |+.|++++|.++
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred Cccc-cchHHHhhccccCCEEECcCCCCC
Confidence 6665 55555555555 666666665554
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.1e-33 Score=268.50 Aligned_cols=109 Identities=19% Similarity=0.174 Sum_probs=62.8
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.+++++|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 45666666666666655556666666666666666666555566666666666666666655444445555555555555
Q ss_pred eCCCCCC-CCCCcCCCCCCCcEEEcccccc
Q 036656 155 GFNELEG-KVPGKLGSLPKLRILVIHSNNL 183 (367)
Q Consensus 155 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~ 183 (367)
++|.+.+ .+|..++++++|++|++++|.+
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 5555543 3355555555555555555443
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=264.77 Aligned_cols=110 Identities=23% Similarity=0.217 Sum_probs=67.0
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 45566666666666555555666666666666666665544555666666666666666665333334666666666666
Q ss_pred eCCCCCC-CCCCcCCCCCCCcEEEccccccc
Q 036656 155 GFNELEG-KVPGKLGSLPKLRILVIHSNNLS 184 (367)
Q Consensus 155 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~ 184 (367)
++|.+.+ .+|..++++++|++|++++|.+.
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 6666664 24666666677777766666543
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-32 Score=264.11 Aligned_cols=127 Identities=24% Similarity=0.272 Sum_probs=96.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.+++++|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57888888888888877788888888889999888888777888888888888888888888 67765 7888888888
Q ss_pred eCCCCCCC-CCCcCCCCCCCcEEEcccccccccCCCCCCCCCCC--CEEEcccCcC
Q 036656 155 GFNELEGK-VPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSL--QVLSASANQF 207 (367)
Q Consensus 155 ~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~ 207 (367)
++|.+++. .|..++.+++|++|++++|.+.+. .+..+++| ++|++++|.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 88888753 356788888888888888877532 23333333 5555555544
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=259.60 Aligned_cols=83 Identities=22% Similarity=0.191 Sum_probs=69.8
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCC-CcCccccCCCCCCEEE
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGG-QIPDNISHCIKLESLR 153 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~-~~p~~~~~l~~L~~L~ 153 (367)
.+++.+++++|.+.+..|..+.++++|++|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|+
T Consensus 45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence 67889999999998888888899999999999999888 56665 78889999999998886 4678888888888888
Q ss_pred eeCCCCC
Q 036656 154 LGFNELE 160 (367)
Q Consensus 154 l~~n~~~ 160 (367)
+++|.++
T Consensus 122 L~~n~l~ 128 (520)
T 2z7x_B 122 LSTTHLE 128 (520)
T ss_dssp EEESSCC
T ss_pred ecCcccc
Confidence 8887765
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.3e-32 Score=258.94 Aligned_cols=277 Identities=19% Similarity=0.195 Sum_probs=195.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCC-CcCccccCCCCCCEEE
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGG-QIPDNISHCIKLESLR 153 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~-~~p~~~~~l~~L~~L~ 153 (367)
.+++.+++++|.+++..+..+.++++|++|++++|.++ .+|.. .+++|++|++++|.+++ ..|..|.++++|++|+
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152 (562)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence 68999999999999988999999999999999999998 67765 79999999999999985 3467899999999999
Q ss_pred eeCCCCCCCCCCcCCCC---------------------------------------------------------------
Q 036656 154 LGFNELEGKVPGKLGSL--------------------------------------------------------------- 170 (367)
Q Consensus 154 l~~n~~~~~~~~~l~~l--------------------------------------------------------------- 170 (367)
+++|.+++.....+..+
T Consensus 153 L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232 (562)
T ss_dssp EECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred cCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence 99888764221111111
Q ss_pred -------------------------------------------CCCcEEEcccccccccCCCCC----------------
Q 036656 171 -------------------------------------------PKLRILVIHSNNLSGEIPSSF---------------- 191 (367)
Q Consensus 171 -------------------------------------------~~L~~L~l~~n~~~~~~~~~l---------------- 191 (367)
++|++|++++|.+.+.+|..+
T Consensus 233 ~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp TTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred cccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 144455555555554555433
Q ss_pred -------------------------------------CCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcc-
Q 036656 192 -------------------------------------GNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG- 233 (367)
Q Consensus 192 -------------------------------------~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~- 233 (367)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 313 ~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp EECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred ccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence 455667777777777776666667777777777777777764
Q ss_pred -ccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCC
Q 036656 234 -EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFG 312 (367)
Q Consensus 234 -~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 312 (367)
..|..+..+++|++|++++|.+++.+|...+..+++|++|++++|++++..|..+. ++|++|++++|+++...+.+.
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~ 470 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT 470 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc
Confidence 23355667777777777777777546655444567777777777777665554432 577778888777774333355
Q ss_pred CCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCC
Q 036656 313 NLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLP 362 (367)
Q Consensus 313 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP 362 (367)
.+++|+.|++++|+++.. |. ..+..+++|+.|++++|++++..|
T Consensus 471 ~l~~L~~L~L~~N~l~~l-~~-----~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 471 HLQALQELNVASNQLKSV-PD-----GVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SSCCCSEEECCSSCCCCC-CT-----TSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCCEEECCCCCCCCC-CH-----HHHhcCCCCCEEEecCCCcCCCcc
Confidence 777888888888877753 21 135667778888888887776554
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.7e-31 Score=237.58 Aligned_cols=273 Identities=21% Similarity=0.257 Sum_probs=229.4
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEee
Q 036656 76 RVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLG 155 (367)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~ 155 (367)
+++.++++++.+.. +|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45678899888774 454443 689999999999997777789999999999999999997779999999999999999
Q ss_pred CCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcc--cCCcccCCCCCCCEEEeecCcCcc
Q 036656 156 FNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVG--QIPATLSELKRMRYISFGGNKLSG 233 (367)
Q Consensus 156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~ 233 (367)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 99998 4555543 799999999999987666678899999999999999863 56778899999999999999998
Q ss_pred ccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCC
Q 036656 234 EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGN 313 (367)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 313 (367)
.+|..+. ++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.++.....+..
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence 4555443 8999999999999966666665 799999999999999977777889999999999999999944344999
Q ss_pred CCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeee
Q 036656 314 LHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 314 ~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
+++|+.|++++|++++..+..+.........+.++.+++++|.+.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 999999999999999876554432222234578999999999885
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=249.73 Aligned_cols=274 Identities=17% Similarity=0.162 Sum_probs=142.3
Q ss_pred CCCCCCCCCccceEecCCC-----------CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCC
Q 036656 56 WNYSRHFCQWKGVTCSPRH-----------QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFR 124 (367)
Q Consensus 56 w~~~~~~c~~~~~~c~~~~-----------~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 124 (367)
|......|.|.++ |+... .+++.++++++.+.+..+..+.++++|++|++++|.+++..+..|.++++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 3334456777765 54221 24555666666655544445555666666666666655444555555666
Q ss_pred CcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCC-CcCCCCCCCcEEEccccc-ccccCCCCCCCCCCCCEEEc
Q 036656 125 LRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVP-GKLGSLPKLRILVIHSNN-LSGEIPSSFGNLSSLQVLSA 202 (367)
Q Consensus 125 L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l 202 (367)
|++|++++|.+++..+..+.++++|++|++++|.++...+ ..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 6666666666553222235555666666666665553222 245555666666665552 44333445555556666666
Q ss_pred ccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhh--cCCCCCCEEEeecCcC
Q 036656 203 SANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLG--FTLPNLEVLNLGANQF 280 (367)
Q Consensus 203 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~L~~L~l~~n~l 280 (367)
++|.+++..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+. .....++.++++++.+
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 66655555555555556666666666555422222233355566666666555532222111 1234455555555555
Q ss_pred cc----ccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCc
Q 036656 281 TG----PIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 281 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 330 (367)
.+ .+|..+..+++|++|++++|+++...+. ++.+++|+.|++++|++++.
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 43 2444455556666666666666533333 45556666666666665554
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-31 Score=243.98 Aligned_cols=266 Identities=18% Similarity=0.190 Sum_probs=223.0
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCc-cccCCCCCCEEE
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPD-NISHCIKLESLR 153 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~-~~~~l~~L~~L~ 153 (367)
.+++.++++++.+.+..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++ .+|. .|.++++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 57999999999999888889999999999999999999878888999999999999999999 5554 468999999999
Q ss_pred eeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcc-------------------cCcCcccCCcc
Q 036656 154 LGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSAS-------------------ANQFVGQIPAT 214 (367)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~-------------------~n~~~~~~~~~ 214 (367)
+++|.+++..+..+..+++|++|++++|.+++.. +..+++|++++++ +|.+... +.
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~- 222 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RG- 222 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE-EC-
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeec-cc-
Confidence 9999999877888999999999999999987532 3344555555554 4444422 21
Q ss_pred cCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCC
Q 036656 215 LSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNL 294 (367)
Q Consensus 215 l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 294 (367)
...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+. .+++|++|++++|+++ .++.....+++|
T Consensus 223 -~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 297 (390)
T 3o6n_A 223 -PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLV-ALNLYGQPIPTL 297 (390)
T ss_dssp -CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCC-EEECSSSCCTTC
T ss_pred -cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCc-ccCcccCCCCCC
Confidence 2347899999999999853 5788999999999999999976676665 6999999999999998 466667789999
Q ss_pred CeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeee
Q 036656 295 MRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGM 360 (367)
Q Consensus 295 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~ 360 (367)
++|++++|++++..+.+..+++|+.|++++|+++.. .+..+++|+.|++++|++++.
T Consensus 298 ~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~---------~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL---------KLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC---------CCCTTCCCSEEECCSSCEEHH
T ss_pred CEEECCCCcceecCccccccCcCCEEECCCCcccee---------CchhhccCCEEEcCCCCccch
Confidence 999999999986554588899999999999999874 156788999999999999864
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.2e-31 Score=257.55 Aligned_cols=134 Identities=23% Similarity=0.168 Sum_probs=119.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
..++.|||++|.+++..+..|.++++|++|+|++|++++..+.+|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999888889999999999999999999777788999999999999999999655667899999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccc-cCCCCCCCCCCCCEEEcccCcCc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSG-EIPSSFGNLSSLQVLSASANQFV 208 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~ 208 (367)
++|.+++..+..|+.+++|++|++++|.+.. ..|..+..+++|++|++++|.++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9999997777779999999999999999875 35677788899999999887654
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=2.3e-31 Score=239.08 Aligned_cols=278 Identities=24% Similarity=0.281 Sum_probs=229.5
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEee
Q 036656 76 RVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLG 155 (367)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~ 155 (367)
+++.++++++.+. .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4677899998887 455555 3689999999999997777889999999999999999997778999999999999999
Q ss_pred CCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcc--cCCcccCCCCCCCEEEeecCcCcc
Q 036656 156 FNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVG--QIPATLSELKRMRYISFGGNKLSG 233 (367)
Q Consensus 156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~ 233 (367)
+|.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 5565544 899999999999986655678999999999999999963 566777777 99999999999985
Q ss_pred ccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CC
Q 036656 234 EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FG 312 (367)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~ 312 (367)
+|..+. ++|++|++++|.+++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|. +.
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 555444 7899999999999865555555 6999999999999999777778899999999999999999 4555 99
Q ss_pred CCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeee--eeCCCCC
Q 036656 313 NLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFG--GMLPEAV 365 (367)
Q Consensus 313 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~--g~iP~~~ 365 (367)
.+++|+.|++++|++++..+..+.........++|+.|++++|.++ +..|..|
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 9999999999999999875543321111122578999999999887 4444444
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=1.5e-30 Score=255.83 Aligned_cols=279 Identities=22% Similarity=0.237 Sum_probs=145.3
Q ss_pred EEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCC-----CcCc----cccCCC
Q 036656 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGG-----QIPD----NISHCI 147 (367)
Q Consensus 77 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~-----~~p~----~~~~l~ 147 (367)
++.+++++|.+.+..+..++.+++|++|++++|.+++..+..+.++++|++|++++|...+ .+|. .|..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 6667777776666666666667777777777776665555555555555555554433221 1121 344455
Q ss_pred CCCEEEeeCCCCCCCCCCcCCCCCCCcEEEccc----------------------------ccccccCCCCCCCCCCCCE
Q 036656 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHS----------------------------NNLSGEIPSSFGNLSSLQV 199 (367)
Q Consensus 148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~----------------------------n~~~~~~~~~l~~l~~L~~ 199 (367)
+|++|++++|.+.+..+..+..+++|++|++++ |.+.+..+..+..+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 555555555555544444444444444444433 3333333444555555666
Q ss_pred EEcccCcCcccCC-cccCCCCCCCEEEeecCcCccc--------------------------cCccccCCCCCCEEECCC
Q 036656 200 LSASANQFVGQIP-ATLSELKRMRYISFGGNKLSGE--------------------------IPFSIYNLSTLSDFHFPF 252 (367)
Q Consensus 200 L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~--------------------------~~~~l~~~~~L~~L~l~~ 252 (367)
|++++|.+.+.++ ..+..+++|++|++++|.+.+. .|..+..+++|++|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 6666655554333 3445555555555555544332 334444555555555555
Q ss_pred CcCcccCChhhhcCCCCCCEEEeecCcCccccc--------hhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEcc
Q 036656 253 NQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIP--------ASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIIS 323 (367)
Q Consensus 253 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~ 323 (367)
|++++ ++...+..+++|++|++++|++++..+ ..+..+++|++|++++|+++...+. +..+++|+.|+++
T Consensus 490 N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 490 NNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 55552 232222245555555555555543211 1134555555555555555533333 5556666666666
Q ss_pred CCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCC
Q 036656 324 MNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLP 362 (367)
Q Consensus 324 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP 362 (367)
+|++++. .+..+..+++|+.|++++|++++..|
T Consensus 569 ~N~l~~l------~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 569 LNNLNTL------PASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp SSCCCCC------CTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred CCCCCcC------CHhHhCCCCCCCEEECCCCcCCccCh
Confidence 6666543 12334556666666666666664443
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=8.1e-32 Score=239.33 Aligned_cols=285 Identities=19% Similarity=0.219 Sum_probs=222.2
Q ss_pred CCCCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCC--C
Q 036656 61 HFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGG--Q 138 (367)
Q Consensus 61 ~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~--~ 138 (367)
..|.|.++.|... +++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.++. .
T Consensus 5 C~C~~~~l~c~~~------------~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 69 (306)
T 2z66_A 5 CSCSGTEIRCNSK------------GLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69 (306)
T ss_dssp CEEETTEEECCSS------------CCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred CeeCCCEEEcCCC------------Ccc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence 3477888877642 222 223322 2578899999999884444457889999999999998872 2
Q ss_pred cCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCC-CCCCCCCCCCEEEcccCcCcccCCcccCC
Q 036656 139 IPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIP-SSFGNLSSLQVLSASANQFVGQIPATLSE 217 (367)
Q Consensus 139 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 217 (367)
.+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 3566777889999999999887 456668888999999999998875544 56888899999999999998888888888
Q ss_pred CCCCCEEEeecCcCcc-ccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCe
Q 036656 218 LKRMRYISFGGNKLSG-EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMR 296 (367)
Q Consensus 218 ~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 296 (367)
+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|++
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 9999999999999886 5788889999999999999999865566655 6899999999999998766667888999999
Q ss_pred EeccCccCcccCCC-CCCCC-CCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 297 LGIPMNGFRGKVPS-FGNLH-KLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 297 L~l~~n~~~~~~~~-~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
|++++|.+++..+. +..++ +|+.|++++|++++..... .+..++.. .+.+.+..+.+....|+.+.
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~-~~~~~l~~---~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ-SFLQWIKD---QRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH-HHHHHHHH---TGGGBSCGGGCBEEESGGGT
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH-HHHHHHHh---hhhhhccccccccCCchhhC
Confidence 99999999988877 77774 8999999999998763211 13344443 33455667788888887653
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.5e-31 Score=256.13 Aligned_cols=87 Identities=23% Similarity=0.288 Sum_probs=71.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCC-CcCccccCCCCCCEEE
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGG-QIPDNISHCIKLESLR 153 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~-~~p~~~~~l~~L~~L~ 153 (367)
.+++.++++++.+.+..+..+.++++|++|++++|++++..+..++++++|++|++++|.+.+ .+|..+.++++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred hhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 578888999888888888888889999999999988885544468888899999999988875 4688888888898888
Q ss_pred eeCCCCCC
Q 036656 154 LGFNELEG 161 (367)
Q Consensus 154 l~~n~~~~ 161 (367)
+++|.+++
T Consensus 156 l~~n~l~~ 163 (570)
T 2z63_A 156 LSSNKIQS 163 (570)
T ss_dssp CTTSCCCE
T ss_pred CcCCccce
Confidence 88887654
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=6e-31 Score=254.47 Aligned_cols=268 Identities=17% Similarity=0.177 Sum_probs=225.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.|+++++.+.+..+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 57999999999999988889999999999999999999888888999999999999999999555555789999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcc------------------cCCcccC
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVG------------------QIPATLS 216 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~------------------~~~~~l~ 216 (367)
++|.+++..|..+..+++|++|++++|.+.+.. +..+++|+.|++++|.+++ .++. .
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~--~ 229 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--P 229 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC--S
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc--c
Confidence 999999888888999999999999999987542 3345555555555554432 1111 1
Q ss_pred CCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCe
Q 036656 217 ELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMR 296 (367)
Q Consensus 217 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 296 (367)
..++|+.|++++|.+++ +..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++ +|..+..+++|+.
T Consensus 230 ~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 305 (597)
T 3oja_B 230 VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA-LNLYGQPIPTLKV 305 (597)
T ss_dssp CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCE-EECSSSCCTTCCE
T ss_pred cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCC-CCcccccCCCCcE
Confidence 23689999999999985 46788999999999999999977777776 69999999999999985 6767778999999
Q ss_pred EeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeee
Q 036656 297 LGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGM 360 (367)
Q Consensus 297 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~ 360 (367)
|++++|.+++..+.+..+++|+.|++++|++++.. +..+++|+.|++++|++++.
T Consensus 306 L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 306 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---------LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---------CCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---------hhhcCCCCEEEeeCCCCCCh
Confidence 99999999954444888999999999999998751 45688999999999999865
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=2.3e-31 Score=267.06 Aligned_cols=277 Identities=20% Similarity=0.211 Sum_probs=203.4
Q ss_pred CcEEEEEcCCCCccccc-CccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCcc--ccCCCCCCE
Q 036656 75 QRVTALLLPSLLLQGSL-SPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDN--ISHCIKLES 151 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~--~~~l~~L~~ 151 (367)
.+++.|+++++...+.+ +..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++.+|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 45666777666555444 455666777777777777766656666677777777777777666544443 666667777
Q ss_pred EEeeCCCCCCCCC-CcCCCCCCCcEEEccccccccc--------------------------CCCCCCCCCC------CC
Q 036656 152 LRLGFNELEGKVP-GKLGSLPKLRILVIHSNNLSGE--------------------------IPSSFGNLSS------LQ 198 (367)
Q Consensus 152 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~--------------------------~~~~l~~l~~------L~ 198 (367)
|++++|.+++..+ ..++++++|++|++++|.+.+. .+..+..+++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 7777776665433 3566666666666666655433 3333333333 78
Q ss_pred EEEcccCcCcccCCcccC------------------------------------C--CCCCCEEEeecCcCccccCcccc
Q 036656 199 VLSASANQFVGQIPATLS------------------------------------E--LKRMRYISFGGNKLSGEIPFSIY 240 (367)
Q Consensus 199 ~L~l~~n~~~~~~~~~l~------------------------------------~--~~~L~~L~l~~n~~~~~~~~~l~ 240 (367)
+|++++|.+++..+..+. . .++|+.|++++|.+.+..+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 888888866544332221 1 26899999999999888888899
Q ss_pred CCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCE
Q 036656 241 NLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQR 319 (367)
Q Consensus 241 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~ 319 (367)
.+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+. +..+++|+.
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred cCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 999999999999999966666555 799999999999999977788899999999999999999877776 999999999
Q ss_pred EEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCC
Q 036656 320 VIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEA 364 (367)
Q Consensus 320 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~ 364 (367)
|++++|.+++.. .+++|+.|++++|+++ .+|..
T Consensus 367 L~Ls~N~l~~i~-----------~~~~L~~L~l~~N~l~-~l~~~ 399 (844)
T 3j0a_A 367 LDLRDNALTTIH-----------FIPSIPDIFLSGNKLV-TLPKI 399 (844)
T ss_dssp EEEETCCSCCCS-----------SCCSCSEEEEESCCCC-CCCCC
T ss_pred EECCCCCCCccc-----------CCCCcchhccCCCCcc-ccccc
Confidence 999999998641 2677888888888887 66654
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.5e-30 Score=232.86 Aligned_cols=263 Identities=24% Similarity=0.365 Sum_probs=195.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+.+..+ +..+++|++|++++|.++. + +.+.++++|++|++++|.+. .++. +..+++|++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS-DISP-LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-CCGG-GTTCTTCCEEEC
T ss_pred CCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-Cchh-hccCCceeEEEC
Confidence 578888888888776443 7788888888888888874 3 35788888888888888887 3444 777888888888
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+.
T Consensus 140 ~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 140 GANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp TTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCC
Confidence 888655333 347788888888888887764322 6777888888888888764332 67778888888888877644
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCC
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNL 314 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 314 (367)
.+ +..+++|++|++++|.+++ ++. +. .+++|++|++++|.+++ + ..+..+++|++|++++|.+++. +.+..+
T Consensus 215 ~~--~~~~~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l 286 (347)
T 4fmz_A 215 TP--VANMTRLNSLKIGNNKITD-LSP-LA-NLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNNL 286 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGC
T ss_pred ch--hhcCCcCCEEEccCCccCC-Ccc-hh-cCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcCC
Confidence 33 6777888888888888873 443 33 67888888888888874 3 3567788888888888888753 457778
Q ss_pred CCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCC
Q 036656 315 HKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLP 362 (367)
Q Consensus 315 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP 362 (367)
++|+.|++++|++++. .+..+..+++|++|++++|++++..|
T Consensus 287 ~~L~~L~L~~n~l~~~------~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNE------DMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TTCSEEECCSSCCCGG------GHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCCCEEECcCCcCCCc------ChhHhhccccCCEEEccCCccccccC
Confidence 8888888888888776 55667788888888888888886555
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.1e-30 Score=250.69 Aligned_cols=285 Identities=21% Similarity=0.249 Sum_probs=210.6
Q ss_pred CCCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCc
Q 036656 62 FCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPD 141 (367)
Q Consensus 62 ~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~ 141 (367)
.|.|.++ |+.. ++.++ .+|..+. +.|++|++++|++++..|..|.++++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c~~~----------~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDGR----------SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EECT----------TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EECC----------CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4888887 7543 34444 3444443 7899999999999988888999999999999999999987788
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccc-cCCCCCCCCCCCCEEEcccCcCcccCC-cccCCCC
Q 036656 142 NISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSG-EIPSSFGNLSSLQVLSASANQFVGQIP-ATLSELK 219 (367)
Q Consensus 142 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~ 219 (367)
.|.++++|++|++++|.+++..+..++.+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+.++ ..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999997777779999999999999999985 356788999999999999998544444 6789999
Q ss_pred CCCEEEeecCcCccccCccccCC------------------------CCCCEEECCCCcCcccC--Chhhh---------
Q 036656 220 RMRYISFGGNKLSGEIPFSIYNL------------------------STLSDFHFPFNQLRGSL--PSDLG--------- 264 (367)
Q Consensus 220 ~L~~L~l~~n~~~~~~~~~l~~~------------------------~~L~~L~l~~n~~~~~~--~~~~~--------- 264 (367)
+|++|++++|.+++..|..+..+ ++|++|++++|.+++.. +..+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 99999999999998777776654 45555555555554310 00000
Q ss_pred ------------------------------------------------------------------------------cC
Q 036656 265 ------------------------------------------------------------------------------FT 266 (367)
Q Consensus 265 ------------------------------------------------------------------------------~~ 266 (367)
..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 00
Q ss_pred CCCCCEEEeecCcCccccchhh-hCCCCCCeEeccCccCcccCC---C-CCCCCCCCEEEccCCcCCCcCCCchhhhhhh
Q 036656 267 LPNLEVLNLGANQFTGPIPASI-SNASNLMRLGIPMNGFRGKVP---S-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSL 341 (367)
Q Consensus 267 ~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~---~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l 341 (367)
.++|++|++++|.+. .+|..+ ..+++|++|++++|.+++.++ . ++.+++|+.|++++|++++..+ ....+
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~ 383 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK----TGEIL 383 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH----HHHHG
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc----chhhh
Confidence 123344444444443 344443 457888888888888877542 2 6778888888888888876411 12446
Q ss_pred cCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 342 VNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 342 ~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
..+++|++|++++|+++ .+|+.++
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~ 407 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQ 407 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCC
T ss_pred hcCCCCCEEECCCCCCc-cCChhhc
Confidence 77888888888888888 6777654
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.4e-31 Score=238.71 Aligned_cols=282 Identities=17% Similarity=0.173 Sum_probs=233.4
Q ss_pred ceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCC
Q 036656 67 GVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHC 146 (367)
Q Consensus 67 ~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l 146 (367)
...|... .+ .+.+++.++. +|..+. ++|++|++++|++++..+..+.++++|++|++++|.+++..|..|.++
T Consensus 27 ~~~C~~~--~~--c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 27 SLSCDRN--GI--CKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp CCEECTT--SE--EECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCCCC--eE--eeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 4567542 33 7888888874 454443 589999999999997666689999999999999999997778889999
Q ss_pred CCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCC-CCCCCCCCCCEEEcccC-cCcccCCcccCCCCCCCEE
Q 036656 147 IKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIP-SSFGNLSSLQVLSASAN-QFVGQIPATLSELKRMRYI 224 (367)
Q Consensus 147 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L 224 (367)
++|++|++++|.+++..+..+..+++|++|++++|.+....+ ..+..+++|++|++++| .+....+..+..+++|++|
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 999999999999996555558999999999999999984333 37889999999999999 4666667789999999999
Q ss_pred EeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhh---hCCCCCCeEeccC
Q 036656 225 SFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASI---SNASNLMRLGIPM 301 (367)
Q Consensus 225 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~ 301 (367)
++++|.+.+..|..+..+++|++|++++|.+. .++......+++|++|++++|.+++..+..+ ...+.++.+++++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 99999999888999999999999999999986 6666655468999999999999986544333 3467788999999
Q ss_pred ccCcc----cCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCC
Q 036656 302 NGFRG----KVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLP 362 (367)
Q Consensus 302 n~~~~----~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP 362 (367)
+.+.+ .+|. +..+++|+.|++++|+++.. | ...+..+++|++|++++|++++..|
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i-~-----~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSV-P-----DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC-C-----TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCcc-C-----HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 88876 3455 78899999999999999953 2 1235789999999999999998766
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.4e-30 Score=230.70 Aligned_cols=235 Identities=19% Similarity=0.232 Sum_probs=201.7
Q ss_pred CCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEE
Q 036656 97 NLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRIL 176 (367)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 176 (367)
..+.+++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578888999998887 77888888889999999988888 88888888888999999888888 667788888888888
Q ss_pred EcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCc
Q 036656 177 VIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLR 256 (367)
Q Consensus 177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 256 (367)
++++|...+.+|..+.. . ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 88888777677665432 1 12234567899999999999998 78888999999999999999998
Q ss_pred ccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCch
Q 036656 257 GSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDL 335 (367)
Q Consensus 257 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~ 335 (367)
.+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|. +..+++|+.|++++|++.+.
T Consensus 220 -~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~----- 292 (328)
T 4fcg_A 220 -ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR----- 292 (328)
T ss_dssp -CCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC-----
T ss_pred -cCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh-----
Confidence 5777665 699999999999999999999999999999999999999999987 99999999999999999998
Q ss_pred hhhhhhcCCCCCCEEeCcCCeee
Q 036656 336 EFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 336 ~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
+|..+.++++|+.+++..+.+.
T Consensus 293 -iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 293 -LPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp -CCGGGGGSCTTCEEECCGGGSC
T ss_pred -ccHHHhhccCceEEeCCHHHHH
Confidence 5577889999999999987654
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.3e-29 Score=227.48 Aligned_cols=258 Identities=23% Similarity=0.351 Sum_probs=219.5
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+.+. +.+..+++|++|++++|.+++ ++. +..+++|++|++++|.....+ ..+..+++|++|++
T Consensus 88 ~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTV 162 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEEC
T ss_pred CcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEe
Confidence 6899999999998863 468999999999999999985 444 889999999999999766444 44899999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+++++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred cCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC
Confidence 9999885443 78899999999999998743 33 7889999999999999986543 78899999999999999854
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCC
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGN 313 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~ 313 (367)
.+ +..+++|++|++++|.+++ ++ .+. .+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+. +..
T Consensus 237 ~~--~~~l~~L~~L~l~~n~l~~-~~-~~~-~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 237 SP--LANLSQLTWLEIGTNQISD-IN-AVK-DLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp GG--GTTCTTCCEEECCSSCCCC-CG-GGT-TCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred cc--hhcCCCCCEEECCCCccCC-Ch-hHh-cCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 43 8899999999999999984 43 343 68999999999999985 3 3578899999999999999987777 889
Q ss_pred CCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeee
Q 036656 314 LHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 314 ~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
+++|+.|++++|++++. .+ +..+++|++|++++|.|+
T Consensus 310 l~~L~~L~L~~n~l~~~------~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDI------RP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSSCCCC------GG--GGGCTTCSEESSSCC---
T ss_pred cccCCEEEccCCccccc------cC--hhhhhccceeehhhhccc
Confidence 99999999999999986 22 678999999999999986
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.6e-30 Score=229.57 Aligned_cols=249 Identities=20% Similarity=0.239 Sum_probs=213.4
Q ss_pred cEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCC--CCCcCCCCCCCcEEEcc
Q 036656 102 RVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGK--VPGKLGSLPKLRILVIH 179 (367)
Q Consensus 102 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~ 179 (367)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57888888887 5676543 6899999999999944444578999999999999998833 25556678999999999
Q ss_pred cccccccCCCCCCCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcc-
Q 036656 180 SNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP-ATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG- 257 (367)
Q Consensus 180 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~- 257 (367)
+|.+. .++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99988 566678899999999999999986554 578899999999999999998888889999999999999999986
Q ss_pred cCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchh
Q 036656 258 SLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLE 336 (367)
Q Consensus 258 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~ 336 (367)
.+|..+. .+++|++|++++|++++..|..+..+++|++|++++|.+++..+. +..+++|+.|++++|++++..+
T Consensus 166 ~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---- 240 (306)
T 2z66_A 166 FLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK---- 240 (306)
T ss_dssp EECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS----
T ss_pred cchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH----
Confidence 4565555 699999999999999977788899999999999999999987765 8899999999999999998743
Q ss_pred hhhhhcCCC-CCCEEeCcCCeeeeeC
Q 036656 337 FVNSLVNAS-RLELLQININNFGGML 361 (367)
Q Consensus 337 ~~~~l~~~~-~L~~L~l~~n~l~g~i 361 (367)
..+..++ +|+.|++++|.+++..
T Consensus 241 --~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 241 --QELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp --SSCCCCCTTCCEEECTTCCEECSG
T ss_pred --HHHHhhhccCCEEEccCCCeeccc
Confidence 4566774 9999999999998764
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=3.5e-29 Score=234.28 Aligned_cols=245 Identities=19% Similarity=0.207 Sum_probs=206.9
Q ss_pred EEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCC
Q 036656 80 LLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNEL 159 (367)
Q Consensus 80 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~ 159 (367)
++.++.+++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 333344444 2444443 6899999999999988888999999999999999999977778999999999999999999
Q ss_pred CCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccC-cCcccCCcccCCCCCCCEEEeecCcCccccCcc
Q 036656 160 EGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASAN-QFVGQIPATLSELKRMRYISFGGNKLSGEIPFS 238 (367)
Q Consensus 160 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 238 (367)
+...+..+..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|++|++++|.+++ +| .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-c
Confidence 9777777899999999999999998666678899999999999984 4444444568889999999999999984 34 4
Q ss_pred ccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCC
Q 036656 239 IYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKL 317 (367)
Q Consensus 239 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L 317 (367)
+..+++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+. +..+++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 78889999999999999866666655 789999999999999987788888999999999999999976666 8889999
Q ss_pred CEEEccCCcCCCc
Q 036656 318 QRVIISMNHLGNG 330 (367)
Q Consensus 318 ~~L~l~~n~l~~~ 330 (367)
+.|++++|++...
T Consensus 293 ~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 293 VELHLHHNPWNCD 305 (452)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEccCCCcCCC
Confidence 9999999998876
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=3.5e-29 Score=235.20 Aligned_cols=260 Identities=25% Similarity=0.361 Sum_probs=164.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcC--------------
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIP-------------- 140 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p-------------- 140 (367)
.+++.++++++.+.+..+ +.++++|++|++++|.+++. +. +.++++|++|++++|.+.+ ++
T Consensus 90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG 164 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE
T ss_pred ccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC
Confidence 577888888887776554 77788888888888877643 32 6677777777777666552 21
Q ss_pred ------ccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCC--------------------CCCCCC
Q 036656 141 ------DNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIP--------------------SSFGNL 194 (367)
Q Consensus 141 ------~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--------------------~~l~~l 194 (367)
..+.++++|++|++++|.+... ..+..+++|++|++++|.+.+..+ ..+..+
T Consensus 165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l 242 (466)
T 1o6v_A 165 NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 242 (466)
T ss_dssp ESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcC
Confidence 1244556666666666665532 234455555555555555543322 223444
Q ss_pred CCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEE
Q 036656 195 SSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLN 274 (367)
Q Consensus 195 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 274 (367)
++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++. +. .+++|++|+
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~-~l~~L~~L~ 315 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP-IS-NLKNLTYLT 315 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG-GG-GCTTCSEEE
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh-hc-CCCCCCEEE
Confidence 555555555555543322 5556666666666666654322 5566667777777776663 222 22 467777777
Q ss_pred eecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcC
Q 036656 275 LGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQINI 354 (367)
Q Consensus 275 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 354 (367)
+++|++++..| +..+++|++|++++|.+++. +.+..+++|+.|++++|++++. .+ +..+++|+.|++++
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~------~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDL------TP--LANLTRITQLGLND 384 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBC------GG--GTTCTTCCEEECCC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCcc------ch--hhcCCCCCEEeccC
Confidence 77777765444 56677777777777777654 4567778888888888887765 22 67788888888888
Q ss_pred Ceeee
Q 036656 355 NNFGG 359 (367)
Q Consensus 355 n~l~g 359 (367)
|.+++
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 88886
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=4e-29 Score=234.79 Aligned_cols=264 Identities=29% Similarity=0.385 Sum_probs=171.5
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+++ ++. +.++++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEEC
Confidence 678999999999887654 8899999999999999985444 8999999999999999984 444 889999999999
Q ss_pred eCCCCCCCCC-------------------CcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCccc
Q 036656 155 GFNELEGKVP-------------------GKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATL 215 (367)
Q Consensus 155 ~~n~~~~~~~-------------------~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 215 (367)
++|.+.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 217 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--L 217 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--c
Confidence 9998774211 1245667777777777776632 236677778888887777765433 4
Q ss_pred CCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccc----------
Q 036656 216 SELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIP---------- 285 (367)
Q Consensus 216 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------- 285 (367)
..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +. .+++|++|++++|.+++..+
T Consensus 218 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 292 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISPLAGLTALTNL 292 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCccccccCCCccCeE
Confidence 4556666666666655432 234455555555555555543222 21 34455555555554442221
Q ss_pred ----------hhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCC
Q 036656 286 ----------ASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININ 355 (367)
Q Consensus 286 ----------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 355 (367)
..+..+++|+.|++++|++++..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|
T Consensus 293 ~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--------SSLANLTNINWLSAGHN 363 (466)
T ss_dssp ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--------GGGTTCTTCCEEECCSS
T ss_pred EcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--------hhhccCCCCCEEeCCCC
Confidence 013444555555555555544333 44555555555555555543 34667788888888888
Q ss_pred eeeeeCC
Q 036656 356 NFGGMLP 362 (367)
Q Consensus 356 ~l~g~iP 362 (367)
+++|..|
T Consensus 364 ~l~~~~~ 370 (466)
T 1o6v_A 364 QISDLTP 370 (466)
T ss_dssp CCCBCGG
T ss_pred ccCccch
Confidence 8887666
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2e-29 Score=235.97 Aligned_cols=228 Identities=22% Similarity=0.180 Sum_probs=203.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57999999999999999999999999999999999999888889999999999999999999666667999999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCC-CCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIP-SSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG 233 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 233 (367)
++|.+....+..+..+++|++|++++|...+.++ ..+..+++|++|++++|.+++. | .+..+++|++|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 9999997666789999999999999854433444 4688999999999999999854 3 57889999999999999998
Q ss_pred ccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCc
Q 036656 234 EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFR 305 (367)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 305 (367)
..|..+..+++|++|++++|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 8889999999999999999999966665554 7999999999999999766677788999999999999865
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=4.6e-29 Score=232.66 Aligned_cols=246 Identities=21% Similarity=0.246 Sum_probs=209.7
Q ss_pred EEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCC
Q 036656 79 ALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNE 158 (367)
Q Consensus 79 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (367)
.++.++.+++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3444444444 3444443 689999999999998788899999999999999999997777889999999999999999
Q ss_pred CCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCc-CcccCCcccCCCCCCCEEEeecCcCccccCc
Q 036656 159 LEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQ-FVGQIPATLSELKRMRYISFGGNKLSGEIPF 237 (367)
Q Consensus 159 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 237 (367)
++...+..+..+++|++|++++|.+....+..+..+++|++|++++|+ +....+..+..+++|++|++++|.++ .+|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence 997766789999999999999999987667789999999999999854 44444457889999999999999998 455
Q ss_pred cccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCC
Q 036656 238 SIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHK 316 (367)
Q Consensus 238 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~ 316 (367)
.+..+++|++|++++|.+++..+..+. .+++|++|++++|++++..+..+..+++|+.|+|++|++++..+. +..+++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 478899999999999999866566555 799999999999999988888889999999999999999977776 889999
Q ss_pred CCEEEccCCcCCCc
Q 036656 317 LQRVIISMNHLGNG 330 (367)
Q Consensus 317 L~~L~l~~n~l~~~ 330 (367)
|+.|+|++|++...
T Consensus 281 L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 281 LERIHLHHNPWNCN 294 (440)
T ss_dssp CCEEECCSSCEECS
T ss_pred CCEEEcCCCCccCC
Confidence 99999999998875
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=3.8e-32 Score=242.00 Aligned_cols=247 Identities=20% Similarity=0.229 Sum_probs=150.7
Q ss_pred CCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCC-CCcCcccc-------CCCCCCEEEeeCCCCCCCCCCcC-
Q 036656 97 NLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFG-GQIPDNIS-------HCIKLESLRLGFNELEGKVPGKL- 167 (367)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~-~~~p~~~~-------~l~~L~~L~l~~n~~~~~~~~~l- 167 (367)
..++|+++++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344555566666666 445544433 556666666552 23444333 45666666666666665555544
Q ss_pred -CCCCCCcEEEcccccccccCCCCCCCC-----CCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc--cCccc
Q 036656 168 -GSLPKLRILVIHSNNLSGEIPSSFGNL-----SSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE--IPFSI 239 (367)
Q Consensus 168 -~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~~~l 239 (367)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5666666666666666644 4444444 6677777777776665556666677777777777766543 22233
Q ss_pred --cCCCCCCEEECCCCcCcc--cCChhhhcCCCCCCEEEeecCcCccccc-hhhhCCCCCCeEeccCccCcccCCC-CCC
Q 036656 240 --YNLSTLSDFHFPFNQLRG--SLPSDLGFTLPNLEVLNLGANQFTGPIP-ASISNASNLMRLGIPMNGFRGKVPS-FGN 313 (367)
Q Consensus 240 --~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~-~~~ 313 (367)
..+++|++|++++|.+++ .++..++..+++|++|++++|++++..| ..+..+++|++|++++|.++ .+|. +.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 566777777777777662 2233333356777777777777775543 33445677777777777777 4444 44
Q ss_pred CCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeee
Q 036656 314 LHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGG 359 (367)
Q Consensus 314 ~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g 359 (367)
++|+.|++++|++++. | . +..+++|++|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p------~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-P------S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-C------C-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-h------h-HhhCCCCCEEeccCCCCCC
Confidence 6777777777777764 2 2 4567777777777777765
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.4e-29 Score=233.53 Aligned_cols=228 Identities=23% Similarity=0.219 Sum_probs=202.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
..++.+++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57899999999999999999999999999999999999878889999999999999999999666667999999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccC-CCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCcc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEI-PSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSG 233 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 233 (367)
++|.+....+..+..+++|++|++++|...+.+ +..+..+++|++|++++|.++. +| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 999999777778999999999999985443344 4578899999999999999984 44 57889999999999999998
Q ss_pred ccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCc
Q 036656 234 EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFR 305 (367)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 305 (367)
..+..+..+++|++|++++|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 8899999999999999999999965555554 7999999999999999777777888999999999999865
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3.6e-29 Score=219.94 Aligned_cols=225 Identities=21% Similarity=0.196 Sum_probs=157.2
Q ss_pred EEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCC
Q 036656 78 TALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157 (367)
Q Consensus 78 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n 157 (367)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 455666666653 33322 457888888888888666667888888888888888888666777888888888888888
Q ss_pred C-CCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccC
Q 036656 158 E-LEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIP 236 (367)
Q Consensus 158 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 236 (367)
. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665556677778888888888887776666667777777777777777776555556777777777777777765544
Q ss_pred ccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcc
Q 036656 237 FSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRG 306 (367)
Q Consensus 237 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 306 (367)
..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 5566667777777777776655455444 46666667766666665444556666666666666666654
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=9.7e-30 Score=223.59 Aligned_cols=225 Identities=20% Similarity=0.209 Sum_probs=142.1
Q ss_pred cEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccc
Q 036656 102 RVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSN 181 (367)
Q Consensus 102 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (367)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 344433 356667777776666544455666667777777766666555666666667777777666
Q ss_pred c-ccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCC
Q 036656 182 N-LSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLP 260 (367)
Q Consensus 182 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 260 (367)
. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccC
Confidence 5 55444556666667777777766666555566666667777777776666554455666666777777776666 333
Q ss_pred hhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCc
Q 036656 261 SDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 261 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 330 (367)
...+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+. +..+++|+.|++++|++.+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 32222466677777777766655566666666677777777766654444 66666677777777766654
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.97 E-value=3.2e-31 Score=236.53 Aligned_cols=271 Identities=14% Similarity=0.157 Sum_probs=227.3
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.++...+++.+.+.......+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 356667778887776666666778899999999999998888899999999999999999985543 889999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|.+++.. ..++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999987432 348999999999999865544 368899999999999987777888999999999999999977
Q ss_pred cCccc-cCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCC
Q 036656 235 IPFSI-YNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGN 313 (367)
Q Consensus 235 ~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 313 (367)
.+..+ ..+++|++|++++|.+++ ++... .+++|++|++++|++++ ++..+..+++|++|++++|.+++....+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~--~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYD-VKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCE-EECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcc-ccccc--ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhc
Confidence 66666 478999999999999984 44433 48999999999999994 555688999999999999999965444889
Q ss_pred CCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCC-eeeeeCCCC
Q 036656 314 LHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININ-NFGGMLPEA 364 (367)
Q Consensus 314 ~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n-~l~g~iP~~ 364 (367)
+++|+.|++++|+++.. ..+..+..+++|+.++++++ .++|..|..
T Consensus 236 l~~L~~L~l~~N~~~~~-----~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCG-----TLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CTTCCEEECTTCCCBHH-----HHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CCCCCEEEccCCCccCc-----CHHHHHhccccceEEECCCchhccCCchhc
Confidence 99999999999999832 26778888999999999954 777776654
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.4e-28 Score=229.76 Aligned_cols=259 Identities=17% Similarity=0.155 Sum_probs=134.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+.+. | .+..+++|++|++++|++++. + ++.+++|++|++++|.+++ ++ +.++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 4566666666666653 2 456666666666666666542 2 5566666666666666653 22 556666666666
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|.+++. + ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|++++|.+++
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 66666542 2 55566666666666665542 1445555555555555333332 24445555555555555543
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC----
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS---- 310 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~---- 310 (367)
+| +..+++|++|++++|.+++. + +. .+++|++|++++|++++ +| +..+++|+.|++++|++++..+.
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~-~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL-D--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC-C--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred ec--cccCCCCCEEECcCCcCCee-c--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 22 44445555555555554422 1 11 34455555555555543 23 34444555555555544433221
Q ss_pred --------------------------CCCCCCCCEEEccCCcCCCcCCCchhhh--hhhcCCCCCCEEeCcCCeeee
Q 036656 311 --------------------------FGNLHKLQRVIISMNHLGNGEKDDLEFV--NSLVNASRLELLQININNFGG 359 (367)
Q Consensus 311 --------------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~l~~~~~L~~L~l~~n~l~g 359 (367)
++.+++|+.|++++|+..+.+|...... -.+..+++|+.|++++|+++|
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 2344566666666665554433211000 024556677777777777776
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.7e-31 Score=237.73 Aligned_cols=269 Identities=18% Similarity=0.195 Sum_probs=218.2
Q ss_pred CCCCCCCCCCCCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCC-CCcchhhc-------CCCC
Q 036656 53 LSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFR-NEIPRAIG-------YLFR 124 (367)
Q Consensus 53 ~~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~l~-------~l~~ 124 (367)
...|.....|+.+..+.......+++.++++++.+ .+|..+... |++|++++|.++ ..++..+. ++++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 96 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence 34565544555555443322225677888888888 667666544 888999999884 45777665 7999
Q ss_pred CcEEEccCCCCCCCcCccc--cCCCCCCEEEeeCCCCCCCCCCcCCCC-----CCCcEEEcccccccccCCCCCCCCCCC
Q 036656 125 LRILRLDNNTFGGQIPDNI--SHCIKLESLRLGFNELEGKVPGKLGSL-----PKLRILVIHSNNLSGEIPSSFGNLSSL 197 (367)
Q Consensus 125 L~~L~l~~~~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L 197 (367)
|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 9999999999998899876 8999999999999999976 7777665 899999999999998777899999999
Q ss_pred CEEEcccCcCccc--CCccc--CCCCCCCEEEeecCcCcc---ccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCC
Q 036656 198 QVLSASANQFVGQ--IPATL--SELKRMRYISFGGNKLSG---EIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNL 270 (367)
Q Consensus 198 ~~L~l~~n~~~~~--~~~~l--~~~~~L~~L~l~~n~~~~---~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 270 (367)
++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .....+..+++|++|++++|.+++..|......+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 9999999998754 23334 889999999999999983 2224456789999999999999976654433357999
Q ss_pred CEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCc
Q 036656 271 EVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 271 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 330 (367)
++|++++|+++ .+|..+. ++|++|++++|++++. |.+..+++|+.|++++|++++.
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence 99999999998 7777665 8999999999999976 5589999999999999999874
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.8e-28 Score=237.59 Aligned_cols=285 Identities=20% Similarity=0.193 Sum_probs=205.1
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 58999999999999888888999999999999999998666678999999999999999999666667999999999999
Q ss_pred eCCCCCCC-CCCcCCCCCCCcEEEcccccccccCCCCCCCC---------------------------------------
Q 036656 155 GFNELEGK-VPGKLGSLPKLRILVIHSNNLSGEIPSSFGNL--------------------------------------- 194 (367)
Q Consensus 155 ~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l--------------------------------------- 194 (367)
++|.+++. .|..+..+++|++|++++|.+.+..+..+..+
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 99998753 56778889999999999887654322211100
Q ss_pred --------------------------------------------------------------------------------
Q 036656 195 -------------------------------------------------------------------------------- 194 (367)
Q Consensus 195 -------------------------------------------------------------------------------- 194 (367)
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence
Q ss_pred ------------CCCCEEEcccCcCcccCC-------------------cccCCCCCCCEEEeecCcCcc----------
Q 036656 195 ------------SSLQVLSASANQFVGQIP-------------------ATLSELKRMRYISFGGNKLSG---------- 233 (367)
Q Consensus 195 ------------~~L~~L~l~~n~~~~~~~-------------------~~l~~~~~L~~L~l~~n~~~~---------- 233 (367)
.+++.|++.+|.+....+ .....+++|+.+++++|.+..
T Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 316 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp CEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred cccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence 112222222221111000 011124556666666554421
Q ss_pred ---------------------------------------c-cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEE
Q 036656 234 ---------------------------------------E-IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVL 273 (367)
Q Consensus 234 ---------------------------------------~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 273 (367)
. .+..+..+++++.++++.|.+.+..+.... .++.+++|
T Consensus 396 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L 474 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVL 474 (635)
T ss_dssp CSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEE
T ss_pred hhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc-cchhhhhh
Confidence 0 112344567778888888888755554443 67888888
Q ss_pred EeecCcCc-cccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEe
Q 036656 274 NLGANQFT-GPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQ 351 (367)
Q Consensus 274 ~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 351 (367)
++++|.+. +..|..+..+++|++|++++|++++..|. |+.+++|++|+|++|++++.. +..+..+++|++|+
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~------~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD------TFPYKCLNSLQVLD 548 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC------CGGGTTCTTCCEEE
T ss_pred hhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC------hhHHhCCCCCCEEE
Confidence 88888644 34566777888888888888888887776 888888888888888888763 34567788888888
Q ss_pred CcCCeeeeeCCCCCC
Q 036656 352 ININNFGGMLPEAVG 366 (367)
Q Consensus 352 l~~n~l~g~iP~~~~ 366 (367)
|++|++++..|+.|.
T Consensus 549 Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQ 563 (635)
T ss_dssp CTTSCCCBCCSSCTT
T ss_pred CCCCcCCCCCHHHHH
Confidence 888888877777664
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3.8e-28 Score=226.83 Aligned_cols=269 Identities=17% Similarity=0.154 Sum_probs=174.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.+++++|.+++. .++++++|++|++++|++++ ++ +..+++|++|++++|.+++ ++ +..+++|++|++
T Consensus 85 ~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 85 TNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDC 155 (457)
T ss_dssp TTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEEC
Confidence 6788999999988874 27888899999999998885 44 7888888888888888885 33 666777777777
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|...+.+ .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. .+..+++|++|++++|.+++
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 777544333 35566677777777776664 33 55566666666666666543 25556666666666666654
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhh----------------------------hcCCCCCCEEEeecCcCccccch
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDL----------------------------GFTLPNLEVLNLGANQFTGPIPA 286 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----------------------------~~~~~~L~~L~l~~n~l~~~~~~ 286 (367)
+| +..+++|++|++++|.+++..+..+ ...+++|++|++++|...+.+|.
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 33 5555666666666665553211110 01245666666666655444442
Q ss_pred --------hhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhh------hhhcCCCCCCEEeC
Q 036656 287 --------SISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFV------NSLVNASRLELLQI 352 (367)
Q Consensus 287 --------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~l~~~~~L~~L~l 352 (367)
.+..+++|++|++++|++++. .++.+++|+.|++++|++++. +.--... .+...+..|..+++
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~l-~~L~~L~l~~n~l~g~~~~~~l~~l~l 381 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDF-SSVGKIPALNNNFEAEGQTITMPKETL 381 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCBC-TTGGGSSGGGTSEEEEEEEEECCCBCC
T ss_pred CCCcceEechhhcccCCEEECCCCccccc--ccccCCcCcEEECCCCCCCCc-cccccccccCCcEEecceeeecCcccc
Confidence 134556788888888888773 377888888888888888863 1100000 01123356778899
Q ss_pred cCCeeeeeCCCCCC
Q 036656 353 NINNFGGMLPEAVG 366 (367)
Q Consensus 353 ~~n~l~g~iP~~~~ 366 (367)
++|+++|.||+.+.
T Consensus 382 ~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 382 TNNSLTIAVSPDLL 395 (457)
T ss_dssp BTTBEEEECCTTCB
T ss_pred ccCcEEEEcChhHh
Confidence 99999999998753
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1e-28 Score=237.55 Aligned_cols=268 Identities=24% Similarity=0.281 Sum_probs=180.9
Q ss_pred CCCCCCCCCCCCccceE--------ecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCC
Q 036656 53 LSSWNYSRHFCQWKGVT--------CSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFR 124 (367)
Q Consensus 53 ~~~w~~~~~~c~~~~~~--------c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 124 (367)
+..|....++|.|.+.. |.. .+++.+++++++++ .+|..+. ++|++|++++|.++ .+|. .+++
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~ 82 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPE 82 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTT
T ss_pred HHHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCC
Confidence 44576666778885532 222 34778888888877 5555554 67888888888777 4554 4677
Q ss_pred CcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEccc
Q 036656 125 LRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASA 204 (367)
Q Consensus 125 L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 204 (367)
|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|.++. +|.. +++|++|++++
T Consensus 83 L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 83 LRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD 150 (622)
T ss_dssp CCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred CCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence 888888888777 5555 55777777777777764 333 34566666666666652 3432 35666666666
Q ss_pred CcCcccCCccc-----------------CCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCC
Q 036656 205 NQFVGQIPATL-----------------SELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTL 267 (367)
Q Consensus 205 n~~~~~~~~~l-----------------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 267 (367)
|.+++ +|..+ ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+
T Consensus 151 N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~----~~ 220 (622)
T 3g06_A 151 NQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA----LP 220 (622)
T ss_dssp SCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC----CC
T ss_pred CcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC----CC
Confidence 66553 22111 223566666666666653 332 2356777777777666 4443 25
Q ss_pred CCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCC
Q 036656 268 PNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRL 347 (367)
Q Consensus 268 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L 347 (367)
++|++|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|+++. +|..+.++++|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~--~~~~L~~L~Ls~N~L~~-------lp~~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM--LPSGLLSLSVYRNQLTR-------LPESLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCCS-------CCGGGGGSCTT
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc--ccccCcEEeCCCCCCCc-------CCHHHhhcccc
Confidence 788889999888884 55 456889999999998884 444 67889999999999884 44567889999
Q ss_pred CEEeCcCCeeeeeCCCCC
Q 036656 348 ELLQININNFGGMLPEAV 365 (367)
Q Consensus 348 ~~L~l~~n~l~g~iP~~~ 365 (367)
+.|+|++|+++|.+|+.+
T Consensus 287 ~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CEEECCSCCCCHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHH
Confidence 999999999998887654
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=7.5e-30 Score=227.64 Aligned_cols=247 Identities=19% Similarity=0.182 Sum_probs=206.8
Q ss_pred CCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcc
Q 036656 100 FLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIH 179 (367)
Q Consensus 100 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 179 (367)
.++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34556777777664455556678899999999999997777889999999999999999986544 8899999999999
Q ss_pred cccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccC
Q 036656 180 SNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSL 259 (367)
Q Consensus 180 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 259 (367)
+|.+++. + ..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9998743 2 348999999999999865543 4688999999999999877778889999999999999999766
Q ss_pred ChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhh
Q 036656 260 PSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVN 339 (367)
Q Consensus 260 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 339 (367)
+..+...+++|++|++++|.+++. +. ...+++|++|++++|.+++..+.+..+++|+.|++++|+++. ++.
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-------l~~ 231 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-------IEK 231 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-------ECT
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-------hhh
Confidence 666644689999999999999854 43 345899999999999999876668899999999999999985 345
Q ss_pred hhcCCCCCCEEeCcCCeee-eeCCCCC
Q 036656 340 SLVNASRLELLQININNFG-GMLPEAV 365 (367)
Q Consensus 340 ~l~~~~~L~~L~l~~n~l~-g~iP~~~ 365 (367)
.+..+++|+.|++++|.++ +.+|+++
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 6778999999999999998 6666544
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=3.4e-27 Score=205.59 Aligned_cols=218 Identities=22% Similarity=0.284 Sum_probs=174.5
Q ss_pred CCCCCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCc
Q 036656 60 RHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQI 139 (367)
Q Consensus 60 ~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 139 (367)
+++|.|.|+.|.-. ...+.++++++.++. +|..+. +.+++|++++|++++..+..|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47899999998643 356789999998885 555443 57999999999998766668899999999999999998555
Q ss_pred CccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCC
Q 036656 140 PDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELK 219 (367)
Q Consensus 140 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~ 219 (367)
+..|.++++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55568889999999999998876666778889999999999988876667778888999999998888866666678888
Q ss_pred CCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCcc
Q 036656 220 RMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTG 282 (367)
Q Consensus 220 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 282 (367)
+|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+..
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeC
Confidence 8888888888888666666778888888888888887 4555444467888888888887753
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.9e-27 Score=219.81 Aligned_cols=237 Identities=26% Similarity=0.380 Sum_probs=105.0
Q ss_pred CCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCc-------------------cccCCCCCCEEEeeCCCCC
Q 036656 100 FLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPD-------------------NISHCIKLESLRLGFNELE 160 (367)
Q Consensus 100 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~-------------------~~~~l~~L~~L~l~~n~~~ 160 (367)
+|++|++++|++++ +| .++++++|++|++++|.++ .+|. .+.++++|++|++++|.++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence 45555555555543 34 3455555555555555544 2333 2444444444444444444
Q ss_pred CCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCcccc
Q 036656 161 GKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIY 240 (367)
Q Consensus 161 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~ 240 (367)
+ +|.. .++|++|++++|.+. .+| .++.+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|..
T Consensus 209 ~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~-- 275 (454)
T 1jl5_A 209 K-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL-- 275 (454)
T ss_dssp S-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC--
T ss_pred c-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc--
Confidence 2 2211 124444444444444 333 24555555555555555543 222 12445555555554442 2221
Q ss_pred CCCCCCEEECCCCcCcc--cCChhh-------------hcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCc
Q 036656 241 NLSTLSDFHFPFNQLRG--SLPSDL-------------GFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFR 305 (367)
Q Consensus 241 ~~~~L~~L~l~~n~~~~--~~~~~~-------------~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 305 (367)
+++|++|++++|.+++ .+|..+ ....++|++|++++|++++ +|.. +++|++|++++|.++
T Consensus 276 -~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 276 -PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp -CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred -cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 2445555555555543 111110 0011456666666666663 4432 467777777777776
Q ss_pred ccCCCCCCCCCCCEEEccCCcCCC--cCCCchhhhhhhcCC-------------CCCCEEeCcCCeeee--eCCCCCC
Q 036656 306 GKVPSFGNLHKLQRVIISMNHLGN--GEKDDLEFVNSLVNA-------------SRLELLQININNFGG--MLPEAVG 366 (367)
Q Consensus 306 ~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~-------------~~L~~L~l~~n~l~g--~iP~~~~ 366 (367)
+ +|. .+++|+.|++++|++++ .+| ..+..+ ++|+.|++++|+++| .+|+++.
T Consensus 351 ~-lp~--~l~~L~~L~L~~N~l~~l~~ip------~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 351 E-VPE--LPQNLKQLHVEYNPLREFPDIP------ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp C-CCC--CCTTCCEEECCSSCCSSCCCCC------TTCCEEECCC---------------------------------
T ss_pred c-ccc--hhhhccEEECCCCCCCcCCCCh------HHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 3 444 46778888888888877 433 333333 678888888888887 8887764
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-28 Score=232.33 Aligned_cols=242 Identities=14% Similarity=0.155 Sum_probs=200.6
Q ss_pred ccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCC
Q 036656 93 PHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPK 172 (367)
Q Consensus 93 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 172 (367)
.....+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++
T Consensus 28 ~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~ 100 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPS 100 (487)
T ss_dssp TTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred HhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCC
Confidence 334456689999999999998778899999999999999999986554 889999999999999887432 2388
Q ss_pred CcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCcccc-CCCCCCEEECC
Q 036656 173 LRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIY-NLSTLSDFHFP 251 (367)
Q Consensus 173 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~ 251 (367)
|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|++|+++
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 99999999999865544 458899999999999988888888999999999999999987777776 78999999999
Q ss_pred CCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcC
Q 036656 252 FNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGE 331 (367)
Q Consensus 252 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 331 (367)
+|.+++. +... .+++|++|++++|.+++ +|..+..+++|+.|++++|.+++..+.+..+++|+.|++++|++.+.
T Consensus 178 ~N~l~~~-~~~~--~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~- 252 (487)
T 3oja_A 178 YNFIYDV-KGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG- 252 (487)
T ss_dssp TSCCCEE-ECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH-
T ss_pred CCccccc-cccc--cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc-
Confidence 9999854 4333 48999999999999995 45558889999999999999997554588899999999999998832
Q ss_pred CCchhhhhhhcCCCCCCEEeCc
Q 036656 332 KDDLEFVNSLVNASRLELLQIN 353 (367)
Q Consensus 332 ~~~~~~~~~l~~~~~L~~L~l~ 353 (367)
..+..+..++.|+.+++.
T Consensus 253 ----~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 ----TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ----HHHHHHTTCHHHHHHHHH
T ss_pred ----chHHHHHhCCCCcEEecc
Confidence 156667777777777775
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.2e-28 Score=230.40 Aligned_cols=233 Identities=21% Similarity=0.206 Sum_probs=199.7
Q ss_pred cchhhcCC----CCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCC
Q 036656 115 IPRAIGYL----FRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSS 190 (367)
Q Consensus 115 ~~~~l~~l----~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 190 (367)
+|..+..+ ++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---
Confidence 45555544 489999999999998778899999999999999999986555 889999999999999988533
Q ss_pred CCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCC
Q 036656 191 FGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNL 270 (367)
Q Consensus 191 l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 270 (367)
..++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+...+++|
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 238999999999999876543 468999999999999988888899999999999999999987777765468999
Q ss_pred CEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEE
Q 036656 271 EVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELL 350 (367)
Q Consensus 271 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 350 (367)
++|++++|.+++. +. ...+++|+.|++++|.+++.++.+..+++|+.|++++|.+++ +|..+..+++|+.|
T Consensus 172 ~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~l~~l~~L~~L 242 (487)
T 3oja_A 172 EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-------IEKALRFSQNLEHF 242 (487)
T ss_dssp CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-------ECTTCCCCTTCCEE
T ss_pred cEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-------cchhhccCCCCCEE
Confidence 9999999999965 33 346899999999999999877778899999999999999997 34557788999999
Q ss_pred eCcCCeee-eeCCCCCC
Q 036656 351 QININNFG-GMLPEAVG 366 (367)
Q Consensus 351 ~l~~n~l~-g~iP~~~~ 366 (367)
++++|.++ |.+|.+++
T Consensus 243 ~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 243 DLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp ECTTCCBCHHHHHHHHT
T ss_pred EcCCCCCcCcchHHHHH
Confidence 99999998 66665543
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.5e-26 Score=212.64 Aligned_cols=256 Identities=25% Similarity=0.358 Sum_probs=166.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+++ +|.. +++|++|++++|++++ ++.. .++|++|++++|.+++ +| .+.++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 579999999999998 5543 4799999999999984 3321 2699999999999994 77 5999999999999
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|.+++ +|..+ ++|++|++++|.+.+ +| .++.+++|++|++++|.+++ +|.. .++|++|++++|.++ .
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-E 229 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-S
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-c
Confidence 9999885 45433 578888998888875 55 57788888888888887764 3322 246666666666665 4
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhh----------------hcCCCCCCEEEeecCcCcc--ccchhhh-------
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDL----------------GFTLPNLEVLNLGANQFTG--PIPASIS------- 289 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----------------~~~~~~L~~L~l~~n~l~~--~~~~~l~------- 289 (367)
+|. +..+++|++|++++|++++ +|... ...+++|++|++++|++++ ..|..+.
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS
T ss_pred ccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCC
Confidence 442 5566666666666666552 33210 0012344455555554443 1111110
Q ss_pred ------CC-CCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeee--e
Q 036656 290 ------NA-SNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGG--M 360 (367)
Q Consensus 290 ------~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g--~ 360 (367)
.. ++|++|++++|++++ +|. .+++|+.|++++|++++. | . .+++|++|++++|+++| .
T Consensus 308 ~l~~i~~~~~~L~~L~Ls~N~l~~-lp~--~~~~L~~L~L~~N~l~~l-p------~---~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 308 EIRSLCDLPPSLEELNVSNNKLIE-LPA--LPPRLERLIASFNHLAEV-P------E---LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp CCSEECCCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSCC-C------C---CCTTCCEEECCSSCCSSCCC
T ss_pred cCCcccCCcCcCCEEECCCCcccc-ccc--cCCcCCEEECCCCccccc-c------c---hhhhccEEECCCCCCCcCCC
Confidence 01 244444444444443 222 135566666666655532 2 2 36789999999999998 8
Q ss_pred CCCCCC
Q 036656 361 LPEAVG 366 (367)
Q Consensus 361 iP~~~~ 366 (367)
+|++++
T Consensus 375 ip~~l~ 380 (454)
T 1jl5_A 375 IPESVE 380 (454)
T ss_dssp CCTTCC
T ss_pred ChHHHH
Confidence 888875
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.7e-26 Score=201.93 Aligned_cols=225 Identities=21% Similarity=0.263 Sum_probs=181.0
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEccccc
Q 036656 103 VLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNN 182 (367)
Q Consensus 103 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 182 (367)
..+..+..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4556666665 5666553 579999999999986666688899999999999999987767788899999999999999
Q ss_pred ccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc-cCccccCCCCCCEEECCCCcCcccCCh
Q 036656 183 LSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE-IPFSIYNLSTLSDFHFPFNQLRGSLPS 261 (367)
Q Consensus 183 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~ 261 (367)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9877778888999999999999999877666788899999999999998863 588888999999999999998854444
Q ss_pred hhhcCCCCCC----EEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCC
Q 036656 262 DLGFTLPNLE----VLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEK 332 (367)
Q Consensus 262 ~~~~~~~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 332 (367)
.+. .+++|+ +|++++|.+++..+. .....+|++|++++|.+++..+. +..+++|+.|++++|++++.-+
T Consensus 168 ~~~-~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLR-VLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGH-HHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred Hhh-hhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 443 355555 889999999854443 34445899999999998876666 7889999999999999988644
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=7e-26 Score=198.00 Aligned_cols=208 Identities=18% Similarity=0.191 Sum_probs=172.1
Q ss_pred CCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEc
Q 036656 99 SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVI 178 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 178 (367)
+.|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47899999999998766668889999999999999998666667888999999999999998777778889999999999
Q ss_pred ccccccccCCCCCCCCCCCCEEEcccCcCccc-CCcccCCCCCCCEEEeecCcCccccCccccCCCCCC----EEECCCC
Q 036656 179 HSNNLSGEIPSSFGNLSSLQVLSASANQFVGQ-IPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLS----DFHFPFN 253 (367)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~----~L~l~~n 253 (367)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99998866666788899999999999998763 578888899999999999999876666666666666 8999999
Q ss_pred cCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccC
Q 036656 254 QLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKV 308 (367)
Q Consensus 254 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 308 (367)
.++ .++...+ ...+|++|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 188 ~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 988 4444444 3568999999999998655556688899999999999988543
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=2.6e-29 Score=235.88 Aligned_cols=283 Identities=17% Similarity=0.180 Sum_probs=211.2
Q ss_pred cEEEEEcCCCCccc----ccCccccCCCCCcEEEccCCCCCCCcchhhc-----CCCCCcEEEccCCCCCCC----cCcc
Q 036656 76 RVTALLLPSLLLQG----SLSPHIGNLSFLRVLSLKNNSFRNEIPRAIG-----YLFRLRILRLDNNTFGGQ----IPDN 142 (367)
Q Consensus 76 ~v~~l~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~l~~~----~p~~ 142 (367)
+++.+++++|.+.+ .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 68888998888874 4577788888899999998888754444332 256789999988888753 3555
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCCcCC-----CCCCCcEEEccccccccc----CCCCCCCCCCCCEEEcccCcCcccC--
Q 036656 143 ISHCIKLESLRLGFNELEGKVPGKLG-----SLPKLRILVIHSNNLSGE----IPSSFGNLSSLQVLSASANQFVGQI-- 211 (367)
Q Consensus 143 ~~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-- 211 (367)
+..+++|++|++++|.++...+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.++...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 66778999999998887643333332 356899999999888753 4555667889999999999886532
Q ss_pred ---CcccCCCCCCCEEEeecCcCccc----cCccccCCCCCCEEECCCCcCcccCChhhh----cCCCCCCEEEeecCcC
Q 036656 212 ---PATLSELKRMRYISFGGNKLSGE----IPFSIYNLSTLSDFHFPFNQLRGSLPSDLG----FTLPNLEVLNLGANQF 280 (367)
Q Consensus 212 ---~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~l 280 (367)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ...++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 22334578999999999998754 566677789999999999988754333332 2336999999999999
Q ss_pred ccc----cchhhhCCCCCCeEeccCccCcccCCC-CC-----CCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEE
Q 036656 281 TGP----IPASISNASNLMRLGIPMNGFRGKVPS-FG-----NLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELL 350 (367)
Q Consensus 281 ~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~-----~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 350 (367)
++. ++..+..+++|++|++++|.+++..+. +. ..++|+.|++++|++++. +...++..+..+++|++|
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS--SCSSLAATLLANHSLREL 403 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH--HHHHHHHHHHHCCCCCEE
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh--hHHHHHHHHHhCCCccEE
Confidence 865 466677889999999999998875432 22 267999999999998852 001266778889999999
Q ss_pred eCcCCeeeee
Q 036656 351 QININNFGGM 360 (367)
Q Consensus 351 ~l~~n~l~g~ 360 (367)
++++|++++.
T Consensus 404 ~l~~N~i~~~ 413 (461)
T 1z7x_W 404 DLSNNCLGDA 413 (461)
T ss_dssp ECCSSSCCHH
T ss_pred ECCCCCCCHH
Confidence 9999998864
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=1.4e-26 Score=201.88 Aligned_cols=223 Identities=21% Similarity=0.257 Sum_probs=121.5
Q ss_pred CCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcc
Q 036656 100 FLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIH 179 (367)
Q Consensus 100 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 179 (367)
.+..+++..+.+.+.. .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 3334455555554322 2445667777777777665 333 356666677777766666532 245555666666666
Q ss_pred cccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccC
Q 036656 180 SNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSL 259 (367)
Q Consensus 180 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 259 (367)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------------ 155 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK------------------ 155 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc------------------
Confidence 66555444444455555555555555555444444444455555555555444333333334
Q ss_pred ChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhh
Q 036656 260 PSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFV 338 (367)
Q Consensus 260 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 338 (367)
+++|++|++++|++++..+..+..+++|++|++++|.+++..+. +..+++|+.|++++|++.+.
T Consensus 156 -------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------- 220 (272)
T 3rfs_A 156 -------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------- 220 (272)
T ss_dssp -------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------
T ss_pred -------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------
Confidence 55555555555555544444445555666666666666554444 55566666666666655543
Q ss_pred hhhcCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 339 NSLVNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 339 ~~l~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
+++|+.|+++.|.++|.+|.++|
T Consensus 221 -----~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 221 -----CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp -----TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred -----CcHHHHHHHHHHhCCCcccCccc
Confidence 34455566666666666666554
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=9.4e-25 Score=190.15 Aligned_cols=201 Identities=22% Similarity=0.291 Sum_probs=109.4
Q ss_pred cEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccC
Q 036656 126 RILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASAN 205 (367)
Q Consensus 126 ~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 205 (367)
++++++++.++ .+|..+. +++++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 34444444444 3333222 34444444444444333334444445555555554444322233344555555555555
Q ss_pred cCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccc
Q 036656 206 QFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIP 285 (367)
Q Consensus 206 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 285 (367)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeCh
Confidence 555444444455555666666666555444455556666666666666665 3343333356667777777766665444
Q ss_pred hhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCc
Q 036656 286 ASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 286 ~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 330 (367)
..+..+++|++|++++|.+++..+. +..+++|+.|++++|++...
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 4566667777777777777655554 66677777777777776654
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=3.7e-29 Score=234.78 Aligned_cols=287 Identities=19% Similarity=0.197 Sum_probs=193.0
Q ss_pred CcEEEEEcCCCCcccccCccc-cCCC----CCcEEEccCCCCCC----CcchhhcCCCCCcEEEccCCCCCCCcCccc--
Q 036656 75 QRVTALLLPSLLLQGSLSPHI-GNLS----FLRVLSLKNNSFRN----EIPRAIGYLFRLRILRLDNNTFGGQIPDNI-- 143 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~-- 143 (367)
.+++.++++++.+.+..+..+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.+....+..+
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 567888888888776544332 2344 68888888888774 357777888888888888888764333322
Q ss_pred ---cCCCCCCEEEeeCCCCCCCC----CCcCCCCCCCcEEEcccccccccCCCCCC-----CCCCCCEEEcccCcCccc-
Q 036656 144 ---SHCIKLESLRLGFNELEGKV----PGKLGSLPKLRILVIHSNNLSGEIPSSFG-----NLSSLQVLSASANQFVGQ- 210 (367)
Q Consensus 144 ---~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~- 210 (367)
...++|++|++++|.+++.. +..+..+++|++|++++|.+....+..+. ..++|++|++++|.++..
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 23457888888888777532 34455677888888888877643322222 245888888888887753
Q ss_pred ---CCcccCCCCCCCEEEeecCcCcccc-----CccccCCCCCCEEECCCCcCccc----CChhhhcCCCCCCEEEeecC
Q 036656 211 ---IPATLSELKRMRYISFGGNKLSGEI-----PFSIYNLSTLSDFHFPFNQLRGS----LPSDLGFTLPNLEVLNLGAN 278 (367)
Q Consensus 211 ---~~~~l~~~~~L~~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n 278 (367)
++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+. .+++|++|++++|
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCC
Confidence 3556667788888888888876432 22233578888888888888743 444444 4788888888888
Q ss_pred cCccccchhhhC-----CCCCCeEeccCccCccc----CCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcC-CCCC
Q 036656 279 QFTGPIPASISN-----ASNLMRLGIPMNGFRGK----VPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVN-ASRL 347 (367)
Q Consensus 279 ~l~~~~~~~l~~-----l~~L~~L~l~~n~~~~~----~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~-~~~L 347 (367)
.+.+..+..+.. .++|++|++++|.+++. ++. +..+++|+.|++++|++++..+. .+...+.. .++|
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L 372 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR--ELCQGLGQPGSVL 372 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH--HHHHHHTSTTCCC
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH--HHHHHHcCCCCce
Confidence 887554443332 26888888888888764 233 56678899999999888765111 11122332 6789
Q ss_pred CEEeCcCCeeee----eCCCC
Q 036656 348 ELLQININNFGG----MLPEA 364 (367)
Q Consensus 348 ~~L~l~~n~l~g----~iP~~ 364 (367)
++|++++|.+++ .+|+.
T Consensus 373 ~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 373 RVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHH
T ss_pred EEEECCCCCCChhhHHHHHHH
Confidence 999999998886 55543
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.3e-24 Score=191.08 Aligned_cols=199 Identities=21% Similarity=0.200 Sum_probs=144.3
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.++. +|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++ ++.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEEC
Confidence 456777777777763 444343 577788888888876667777788888888888887773 3332 66778888888
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 888777 5566677777888888888877755556677778888888888877766666667777888888888877755
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCc
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFT 281 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 281 (367)
.+..+..+++|++|++++|+++ .+|..++ ..++|+.+++++|.+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCcc
Confidence 5555667777888888888777 6676666 4667788888777765
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=5.9e-27 Score=210.71 Aligned_cols=267 Identities=18% Similarity=0.227 Sum_probs=153.2
Q ss_pred CCCCccceEecCCCCcEEEEEcCCCCcccccCccccCC--CCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCC
Q 036656 61 HFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNL--SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQ 138 (367)
Q Consensus 61 ~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~ 138 (367)
.|.+|+++.+++ ...+.++++++.+.+ ..+..+ +.++.+++++|.+++..+. +..+++|++|++++|.+.+.
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCc--hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 455788888764 345666666665542 223333 5566666666655544333 33455555555555554432
Q ss_pred -cCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccC-cCcc-cCCccc
Q 036656 139 -IPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASAN-QFVG-QIPATL 215 (367)
Q Consensus 139 -~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~-~~~~~l 215 (367)
++..+..+++|++|++++|.++ +..+..+..+++|++|++++| .+++ .++..+
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~------------------------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLS------------------------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCC------------------------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccC------------------------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 4444444555555555555444 333334444555555555555 3433 133445
Q ss_pred CCCCCCCEEEeecC-cCccc-cCccccCCC-CCCEEECCCC--cCc-ccCChhhhcCCCCCCEEEeecCc-Cccccchhh
Q 036656 216 SELKRMRYISFGGN-KLSGE-IPFSIYNLS-TLSDFHFPFN--QLR-GSLPSDLGFTLPNLEVLNLGANQ-FTGPIPASI 288 (367)
Q Consensus 216 ~~~~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l 288 (367)
..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+. .+++|++|++++|. +++..+..+
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHH
Confidence 55666777777766 66543 445566666 7777777777 344 23444444 47788888888877 665666677
Q ss_pred hCCCCCCeEeccCcc-CcccCC-CCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 289 SNASNLMRLGIPMNG-FRGKVP-SFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 289 ~~l~~L~~L~l~~n~-~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
..+++|++|++++|. +..... .+..+++|+.|++++| ++.. ....+. .+++.|++++|+++|..|+.++
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~------~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG------TLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT------CHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH------HHHHHH--hhCcceEEecccCccccCCccc
Confidence 777888888888874 332222 2667788888888877 3332 112221 1244456788888888887765
Q ss_pred C
Q 036656 367 N 367 (367)
Q Consensus 367 ~ 367 (367)
+
T Consensus 315 ~ 315 (336)
T 2ast_B 315 N 315 (336)
T ss_dssp S
T ss_pred c
Confidence 3
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=8e-25 Score=190.75 Aligned_cols=210 Identities=22% Similarity=0.278 Sum_probs=146.1
Q ss_pred ccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCc
Q 036656 95 IGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLR 174 (367)
Q Consensus 95 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (367)
...+++|+.|+++++.++. + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3456677777777777652 2 246677777777777777763 3 3567777777777777777766566667777777
Q ss_pred EEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCc
Q 036656 175 ILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQ 254 (367)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 254 (367)
+|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 77777777775555556777777788877777776666666777788888888887776656666777777888887777
Q ss_pred CcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCC
Q 036656 255 LRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHK 316 (367)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~ 316 (367)
+++..+..+. .+++|++|++++|.+.+. +++|+.++++.|.++|.+|. ++.++.
T Consensus 193 l~~~~~~~~~-~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFD-RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTT-TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHh-CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 7744333333 577788888877776633 44677777777777777776 555443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.5e-24 Score=189.13 Aligned_cols=204 Identities=23% Similarity=0.241 Sum_probs=147.8
Q ss_pred cccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCC
Q 036656 94 HIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKL 173 (367)
Q Consensus 94 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 173 (367)
.+.++++++++++++++++ .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++..+. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 3567788888888888887 5665543 5788888888888766677788888888888888887743322 577778
Q ss_pred cEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCC
Q 036656 174 RILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFN 253 (367)
Q Consensus 174 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 253 (367)
++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888888776 56666777777888888877777666666777777777777777777655566667777777777777
Q ss_pred cCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCc
Q 036656 254 QLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFR 305 (367)
Q Consensus 254 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 305 (367)
+++ .+|...+..+++|++|++++|+++ .+|..+...++|+.+++++|.+.
T Consensus 159 ~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 776 555554445777777777777776 56666666667777777777664
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=6.3e-27 Score=212.62 Aligned_cols=251 Identities=18% Similarity=0.164 Sum_probs=191.0
Q ss_pred EEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcc----hhhcCCC-CCcEEEccCCCCCCCcCccccCC-----CCC
Q 036656 80 LLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIP----RAIGYLF-RLRILRLDNNTFGGQIPDNISHC-----IKL 149 (367)
Q Consensus 80 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~~~l~~~~p~~~~~l-----~~L 149 (367)
.+++.++++|.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5778888998888877777789999999999987666 7788888 89999999999987666666654 899
Q ss_pred CEEEeeCCCCCCCCCCc----CCCC-CCCcEEEcccccccccCCCC----CCC-CCCCCEEEcccCcCcccC----Cccc
Q 036656 150 ESLRLGFNELEGKVPGK----LGSL-PKLRILVIHSNNLSGEIPSS----FGN-LSSLQVLSASANQFVGQI----PATL 215 (367)
Q Consensus 150 ~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~----l~~-l~~L~~L~l~~n~~~~~~----~~~l 215 (367)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.++... +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999988665543 3344 78999999999987554433 333 368999999999988533 3334
Q ss_pred CCCC-CCCEEEeecCcCccccCc----cccCC-CCCCEEECCCCcCccc----CChhhhcCCCCCCEEEeecCcCccccc
Q 036656 216 SELK-RMRYISFGGNKLSGEIPF----SIYNL-STLSDFHFPFNQLRGS----LPSDLGFTLPNLEVLNLGANQFTGPIP 285 (367)
Q Consensus 216 ~~~~-~L~~L~l~~n~~~~~~~~----~l~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~ 285 (367)
...+ +|++|++++|.+++..+. .+... ++|++|++++|.+++. ++..+....++|++|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4555 999999999999765543 33445 5899999999998853 444444334699999999999986544
Q ss_pred ----hhhhCCCCCCeEeccCccCccc-------CC-CCCCCCCCCEEEccCCcCCCc
Q 036656 286 ----ASISNASNLMRLGIPMNGFRGK-------VP-SFGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 286 ----~~l~~l~~L~~L~l~~n~~~~~-------~~-~~~~~~~L~~L~l~~n~l~~~ 330 (367)
..+..+++|++|++++|.+.+. ++ .+..+++|+.||+++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3346678999999999984332 22 267888899999999998776
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=8.6e-27 Score=211.71 Aligned_cols=259 Identities=17% Similarity=0.185 Sum_probs=202.6
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcC----ccccCCC-CCCEEEeeCCCCCCCCCCcCCCC-----CC
Q 036656 103 VLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIP----DNISHCI-KLESLRLGFNELEGKVPGKLGSL-----PK 172 (367)
Q Consensus 103 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p----~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~ 172 (367)
.++++++.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999998888887777789999999999986655 6788888 99999999999987666666554 89
Q ss_pred CcEEEcccccccccCCCC----CCCC-CCCCEEEcccCcCcccCCcc----cCC-CCCCCEEEeecCcCccc----cCcc
Q 036656 173 LRILVIHSNNLSGEIPSS----FGNL-SSLQVLSASANQFVGQIPAT----LSE-LKRMRYISFGGNKLSGE----IPFS 238 (367)
Q Consensus 173 L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~----l~~-~~~L~~L~l~~n~~~~~----~~~~ 238 (367)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+++. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998655443 3444 89999999999998665544 344 36999999999999853 3344
Q ss_pred ccCCC-CCCEEECCCCcCcccCChhhh---cCC-CCCCEEEeecCcCccc----cchhhhC-CCCCCeEeccCccCcccC
Q 036656 239 IYNLS-TLSDFHFPFNQLRGSLPSDLG---FTL-PNLEVLNLGANQFTGP----IPASISN-ASNLMRLGIPMNGFRGKV 308 (367)
Q Consensus 239 l~~~~-~L~~L~l~~n~~~~~~~~~~~---~~~-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~l~~n~~~~~~ 308 (367)
+...+ +|++|++++|.+++..+..+. ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 999999999999866554332 134 5999999999999853 4555555 469999999999998754
Q ss_pred C----C-CCCCCCCCEEEccCCcCCCcCCCch-hhhhhhcCCCCCCEEeCcCCeeeeeC
Q 036656 309 P----S-FGNLHKLQRVIISMNHLGNGEKDDL-EFVNSLVNASRLELLQININNFGGML 361 (367)
Q Consensus 309 ~----~-~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~n~l~g~i 361 (367)
+ . +..+++|+.|++++|.+.+..+... .+...+..+++|+.||+++|++.+..
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 4 2 6788999999999999766533211 23456778899999999999998763
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=5.6e-25 Score=195.48 Aligned_cols=200 Identities=17% Similarity=0.182 Sum_probs=108.0
Q ss_pred CCCEEEeeCCCCCCCCCCcC--CCCCCCcEEEcccccccccCC----CCCCCCCCCCEEEcccCcCcccCCcccCCCCCC
Q 036656 148 KLESLRLGFNELEGKVPGKL--GSLPKLRILVIHSNNLSGEIP----SSFGNLSSLQVLSASANQFVGQIPATLSELKRM 221 (367)
Q Consensus 148 ~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 221 (367)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444433 444444444444444443222 112344555555555555555545555555666
Q ss_pred CEEEeecCcCccc--c--CccccCCCCCCEEECCCCcCcccCCh---hhhcCCCCCCEEEeecCcCccccchhhhCC---
Q 036656 222 RYISFGGNKLSGE--I--PFSIYNLSTLSDFHFPFNQLRGSLPS---DLGFTLPNLEVLNLGANQFTGPIPASISNA--- 291 (367)
Q Consensus 222 ~~L~l~~n~~~~~--~--~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l--- 291 (367)
++|++++|.+.+. + +..+..+++|++|++++|+++ .++. .+...+++|++|++++|++++..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 6666666654431 1 122345566666666666665 2222 122245677777777777765555555444
Q ss_pred CCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeee
Q 036656 292 SNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGG 359 (367)
Q Consensus 292 ~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g 359 (367)
++|++|++++|+++ .+|. +. ++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-------CTTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-------hhhhCCCccEEECcCCCCCC
Confidence 57777777777776 3343 42 6777777777777653 1 13456777777777777653
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=2.9e-27 Score=212.69 Aligned_cols=231 Identities=14% Similarity=0.168 Sum_probs=163.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCC-cchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEE
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNE-IPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLR 153 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~ 153 (367)
.+++.++++++.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5789999999999887665 56899999999999999866 888899999999999999999888888899999999999
Q ss_pred eeCC-CCCCC-CCCcCCCCCCCcEEEcccc-ccccc-CCCCCCCCC-CCCEEEcccC--cCc-ccCCcccCCCCCCCEEE
Q 036656 154 LGFN-ELEGK-VPGKLGSLPKLRILVIHSN-NLSGE-IPSSFGNLS-SLQVLSASAN--QFV-GQIPATLSELKRMRYIS 225 (367)
Q Consensus 154 l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~~~-~~~~~~l~~~~~L~~L~ 225 (367)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 56642 4555677888888888888 76643 344556677 7888888777 343 33445556677777777
Q ss_pred eecCc-CccccCccccCCCCCCEEECCCCc-CcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCcc
Q 036656 226 FGGNK-LSGEIPFSIYNLSTLSDFHFPFNQ-LRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNG 303 (367)
Q Consensus 226 l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 303 (367)
+++|. +++..+..+..+++|++|++++|. ++......+. .+++|++|++++| ++......+. .+++.|++++|.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 77777 555555666677777777777773 2211111233 4677777777766 4432222221 234555566677
Q ss_pred CcccCCC
Q 036656 304 FRGKVPS 310 (367)
Q Consensus 304 ~~~~~~~ 310 (367)
+++..|.
T Consensus 305 l~~~~~~ 311 (336)
T 2ast_B 305 FTTIARP 311 (336)
T ss_dssp SCCTTCS
T ss_pred CccccCC
Confidence 7666555
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=6.2e-24 Score=182.89 Aligned_cols=191 Identities=20% Similarity=0.199 Sum_probs=141.7
Q ss_pred CCCCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcC
Q 036656 61 HFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIP 140 (367)
Q Consensus 61 ~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p 140 (367)
+|+.|.|..|.. ..+.++++++.+.. +|..+. +.++.|++++|.+++..+..|.++++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 577899999963 34568888887773 444443 578888888888887777778888888888888888887767
Q ss_pred ccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCC
Q 036656 141 DNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKR 220 (367)
Q Consensus 141 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 220 (367)
..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77788888888888888888666666777888888888888777555555677777777777777777655556777777
Q ss_pred CCEEEeecCcCccccCccccCCCCCCEEECCCCcCcc
Q 036656 221 MRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG 257 (367)
Q Consensus 221 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 257 (367)
|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 7777777777775555566666777777777776654
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=6.8e-27 Score=214.35 Aligned_cols=239 Identities=17% Similarity=0.230 Sum_probs=150.7
Q ss_pred cCccccCCCCCcEEEccCCCCCCCcc----hhhcCCCCCcEEEccCCC---CCCCcCccc-------cCCCCCCEEEeeC
Q 036656 91 LSPHIGNLSFLRVLSLKNNSFRNEIP----RAIGYLFRLRILRLDNNT---FGGQIPDNI-------SHCIKLESLRLGF 156 (367)
Q Consensus 91 ~~~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~---l~~~~p~~~-------~~l~~L~~L~l~~ 156 (367)
++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44556677888888888888876533 336678888888888754 334445444 5677888888888
Q ss_pred CCCCC----CCCCcCCCCCCCcEEEcccccccccCCCC----CCCC---------CCCCEEEcccCcCc-ccCC---ccc
Q 036656 157 NELEG----KVPGKLGSLPKLRILVIHSNNLSGEIPSS----FGNL---------SSLQVLSASANQFV-GQIP---ATL 215 (367)
Q Consensus 157 n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~~~-~~~~---~~l 215 (367)
|.++. .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.++ ...+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 87775 24555667777888888777765332222 2222 67777777777765 2232 244
Q ss_pred CCCCCCCEEEeecCcCcc-----ccCccccCCCCCCEEECCCCcCc----ccCChhhhcCCCCCCEEEeecCcCccc---
Q 036656 216 SELKRMRYISFGGNKLSG-----EIPFSIYNLSTLSDFHFPFNQLR----GSLPSDLGFTLPNLEVLNLGANQFTGP--- 283 (367)
Q Consensus 216 ~~~~~L~~L~l~~n~~~~-----~~~~~l~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~~L~~L~l~~n~l~~~--- 283 (367)
..+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..+|..+. .+++|++|++++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHH
Confidence 556677777777776652 22335566677777777777764 34454444 466777777777776644
Q ss_pred -cchhhhC--CCCCCeEeccCccCcc----cCCC-C-CCCCCCCEEEccCCcCCCc
Q 036656 284 -IPASISN--ASNLMRLGIPMNGFRG----KVPS-F-GNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 284 -~~~~l~~--l~~L~~L~l~~n~~~~----~~~~-~-~~~~~L~~L~l~~n~l~~~ 330 (367)
++..+.. +++|++|++++|.+++ .++. + .++++|+.|++++|++++.
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 3444432 6667777777777665 2444 3 4567777777777776655
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=1.7e-24 Score=192.39 Aligned_cols=227 Identities=16% Similarity=0.165 Sum_probs=185.3
Q ss_pred CCCCcEEEccCCCCCCCcch---hhcCCCCCcEEEccCCCCCCCcCccc--cCCCCCCEEEeeCCCCCCCCC----CcCC
Q 036656 98 LSFLRVLSLKNNSFRNEIPR---AIGYLFRLRILRLDNNTFGGQIPDNI--SHCIKLESLRLGFNELEGKVP----GKLG 168 (367)
Q Consensus 98 l~~L~~L~l~~~~l~~~~~~---~l~~l~~L~~L~l~~~~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~ 168 (367)
...++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578889988887643111 12245779999999999998899888 899999999999999987554 3456
Q ss_pred CCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCccc--C--CcccCCCCCCCEEEeecCcCccccCc----ccc
Q 036656 169 SLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQ--I--PATLSELKRMRYISFGGNKLSGEIPF----SIY 240 (367)
Q Consensus 169 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~~~~L~~L~l~~n~~~~~~~~----~l~ 240 (367)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.++. ++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 789999999999999887788899999999999999997642 2 2334688999999999999973 222 356
Q ss_pred CCCCCCEEECCCCcCcccCChhhhcCC---CCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCC
Q 036656 241 NLSTLSDFHFPFNQLRGSLPSDLGFTL---PNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKL 317 (367)
Q Consensus 241 ~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 317 (367)
.+++|++|++++|.+++..|..+. .+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |.+..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCc
Confidence 789999999999999977676654 34 79999999999999 6777664 8999999999999964 447788999
Q ss_pred CEEEccCCcCCCc
Q 036656 318 QRVIISMNHLGNG 330 (367)
Q Consensus 318 ~~L~l~~n~l~~~ 330 (367)
+.|++++|+++..
T Consensus 297 ~~L~L~~N~l~~~ 309 (310)
T 4glp_A 297 DNLTLDGNPFLVP 309 (310)
T ss_dssp SCEECSSTTTSCC
T ss_pred cEEECcCCCCCCC
Confidence 9999999998763
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=4.5e-23 Score=198.37 Aligned_cols=223 Identities=26% Similarity=0.295 Sum_probs=163.3
Q ss_pred CCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEc
Q 036656 99 SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVI 178 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 178 (367)
..+++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++. +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 46899999999998 7787665 79999999999998 6776 57899999999999984 555 6799999999
Q ss_pred ccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcc-
Q 036656 179 HSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRG- 257 (367)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~- 257 (367)
++|.+++ +|. .+++|++|++++|.++. +|.. +++|++|++++|.+++ +|.. +++|+.|++++|.+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEECCCCCCCCC
Confidence 9999984 454 56899999999999985 4443 4899999999999874 3332 2344555555554441
Q ss_pred ------------------cCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCE
Q 036656 258 ------------------SLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQR 319 (367)
Q Consensus 258 ------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 319 (367)
.+|. .+++|+.|++++|.++ .+|. .+++|+.|++++|.+++ +| ..+++|+.
T Consensus 177 ~~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp--~~l~~L~~ 245 (622)
T 3g06_A 177 PMLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP--VLPSELKE 245 (622)
T ss_dssp CCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC--CCCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC--CCCCcCcE
Confidence 2222 1344555555555544 2332 23677888888887775 33 45578888
Q ss_pred EEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 320 VIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 320 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
|++++|+++.. | . .+++|+.|++++|+++ .+|++|+
T Consensus 246 L~Ls~N~L~~l-p------~---~~~~L~~L~Ls~N~L~-~lp~~l~ 281 (622)
T 3g06_A 246 LMVSGNRLTSL-P------M---LPSGLLSLSVYRNQLT-RLPESLI 281 (622)
T ss_dssp EECCSSCCSCC-C------C---CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred EECCCCCCCcC-C------c---ccccCcEEeCCCCCCC-cCCHHHh
Confidence 88888888753 2 2 4678999999999999 8898765
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3.9e-26 Score=209.26 Aligned_cols=244 Identities=22% Similarity=0.239 Sum_probs=121.0
Q ss_pred cchhhcCCCCCcEEEccCCCCCCC----cCccccCCCCCCEEEeeCCCCC---CCCCCcC-------CCCCCCcEEEccc
Q 036656 115 IPRAIGYLFRLRILRLDNNTFGGQ----IPDNISHCIKLESLRLGFNELE---GKVPGKL-------GSLPKLRILVIHS 180 (367)
Q Consensus 115 ~~~~l~~l~~L~~L~l~~~~l~~~----~p~~~~~l~~L~~L~l~~n~~~---~~~~~~l-------~~l~~L~~L~l~~ 180 (367)
++..+..+++|++|++++|.+... ++..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 444455555666666666655533 2223445566666666554322 2223222 4555666666666
Q ss_pred ccccc----cCCCCCCCCCCCCEEEcccCcCcccCCccc----CCC---------CCCCEEEeecCcCc-cccC---ccc
Q 036656 181 NNLSG----EIPSSFGNLSSLQVLSASANQFVGQIPATL----SEL---------KRMRYISFGGNKLS-GEIP---FSI 239 (367)
Q Consensus 181 n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l----~~~---------~~L~~L~l~~n~~~-~~~~---~~l 239 (367)
|.+.. .++..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|.++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 65554 233444555666666666665543222222 222 56666666666554 2222 234
Q ss_pred cCCCCCCEEECCCCcCccc-----CChhhhcCCCCCCEEEeecCcCc----cccchhhhCCCCCCeEeccCccCccc---
Q 036656 240 YNLSTLSDFHFPFNQLRGS-----LPSDLGFTLPNLEVLNLGANQFT----GPIPASISNASNLMRLGIPMNGFRGK--- 307 (367)
Q Consensus 240 ~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~~~~~--- 307 (367)
..+++|++|++++|.++.. .+..+. .+++|++|++++|.++ +.+|..+..+++|++|++++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 4555666666666655421 111222 3556666666666654 34455555556666666666665543
Q ss_pred -CCC-C--CCCCCCCEEEccCCcCCCcCCCchhhhhhh-cCCCCCCEEeCcCCeeeeeC
Q 036656 308 -VPS-F--GNLHKLQRVIISMNHLGNGEKDDLEFVNSL-VNASRLELLQININNFGGML 361 (367)
Q Consensus 308 -~~~-~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~n~l~g~i 361 (367)
++. + +.+++|+.|+|++|++++. +...++..+ .++++|+.|++++|++++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~--g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELD--AVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHH--HHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHH--HHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 222 2 3355666666666665541 000033333 34556666666666655443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.2e-23 Score=179.76 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=97.0
Q ss_pred CCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCC-CCCCcCccccCCCCCCEEEeeC-CCCCCCCCCcCCCCCCCcEEE
Q 036656 100 FLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNT-FGGQIPDNISHCIKLESLRLGF-NELEGKVPGKLGSLPKLRILV 177 (367)
Q Consensus 100 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~ 177 (367)
.|++|++++|++++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.++...+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56667777776665444456666666666666665 5533333555666666666665 555544344455555555555
Q ss_pred cccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecC-cCccccCccccCCCCCC-EEECCCCcC
Q 036656 178 IHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGN-KLSGEIPFSIYNLSTLS-DFHFPFNQL 255 (367)
Q Consensus 178 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~~ 255 (367)
+++|.+++ +|. +..+++|+ .|++|++++| .+++..+..+..+++|+ +|++++|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 55555442 332 33333333 0014555555 44433333344445555 555555544
Q ss_pred cccCChhhhcCCCCCCEEEeecCc-CccccchhhhCC-CCCCeEeccCccCcccCCCCCCCCCCCEEEccCC
Q 036656 256 RGSLPSDLGFTLPNLEVLNLGANQ-FTGPIPASISNA-SNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMN 325 (367)
Q Consensus 256 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 325 (367)
+ .+|...+. .++|++|++++|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 169 ~-~i~~~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 T-SVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp C-EECTTTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred c-ccCHhhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 4 34433332 2445555555552 443333334444 4455555555544432222 3444444444443
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=1.2e-23 Score=186.54 Aligned_cols=195 Identities=26% Similarity=0.380 Sum_probs=153.6
Q ss_pred ccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCc
Q 036656 95 IGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLR 174 (367)
Q Consensus 95 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (367)
...+++|++|+++++.++. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4567889999999998873 44 5788999999999999988 4444 88889999999999988753 3678888999
Q ss_pred EEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCc
Q 036656 175 ILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQ 254 (367)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 254 (367)
+|++++|.+.+ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. . +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCc
Confidence 99999998875 33 37788889999999888875433 778888888999888887533 3 7788888888888888
Q ss_pred CcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcc
Q 036656 255 LRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRG 306 (367)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 306 (367)
+++ ++. +. .+++|++|++++|++++.. .+..+++|+.|++++|.+++
T Consensus 185 l~~-~~~-l~-~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISD-ISP-LA-SLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCC-CGG-GG-GCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCc-Chh-hc-CCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 873 443 33 5888888888888888543 26788888888888888875
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=4.3e-23 Score=177.60 Aligned_cols=179 Identities=22% Similarity=0.288 Sum_probs=96.9
Q ss_pred CCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcc
Q 036656 124 RLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSAS 203 (367)
Q Consensus 124 ~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 203 (367)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456666666666 5555443 456666666666665555555566666666666666554444445555555555555
Q ss_pred cCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccc
Q 036656 204 ANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGP 283 (367)
Q Consensus 204 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 283 (367)
+|.+++..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|++++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-------------------------LTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------CTTCCEEECCSSCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-------------------------CCcccEEECcCCcCCcc
Confidence 55555444444444555555555555544333333344 45555555555555533
Q ss_pred cchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCc
Q 036656 284 IPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 284 ~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 330 (367)
.+..+..+++|++|++++|++++..+. +..+++|+.|++++|++.+.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 333455555555555555555544443 55555566666666655554
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.5e-23 Score=177.82 Aligned_cols=197 Identities=18% Similarity=0.139 Sum_probs=156.0
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCC-CCCCcchhhcCCCCCcEEEccC-CCCCCCcCccccCCCCCCEE
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNS-FRNEIPRAIGYLFRLRILRLDN-NTFGGQIPDNISHCIKLESL 152 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~p~~~~~l~~L~~L 152 (367)
..++.++++++.+++..+..+..+++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999998888889999999999999997 8866666899999999999998 99996666789999999999
Q ss_pred EeeCCCCCCCCCCcCCCCCCCc---EEEcccc-cccccCCCCCCCCCCCC-EEEcccCcCcccCCcccCCCCCCCEEEee
Q 036656 153 RLGFNELEGKVPGKLGSLPKLR---ILVIHSN-NLSGEIPSSFGNLSSLQ-VLSASANQFVGQIPATLSELKRMRYISFG 227 (367)
Q Consensus 153 ~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 227 (367)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++...+..+.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999986 565 88888888 9999999 88765556688888888 8888888887333333333 678888888
Q ss_pred cCc-CccccCccccCC-CCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecC
Q 036656 228 GNK-LSGEIPFSIYNL-STLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGAN 278 (367)
Q Consensus 228 ~n~-~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 278 (367)
+|. +++..+..+..+ ++|++|++++|.++ .+|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 874 765555666667 77777777777776 44543 3567777766554
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.1e-22 Score=180.43 Aligned_cols=191 Identities=23% Similarity=0.340 Sum_probs=146.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.+++.++++++.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 4688888888877653 3 57788888888888888874 343 8888888888888888873 43 5788888888888
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccc
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 88888753 3 37788888888888888874432 7778888888888888875433 77888888888888888754
Q ss_pred cCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCcc
Q 036656 235 IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTG 282 (367)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 282 (367)
.+ +..+++|++|++++|.+++ ++. +. .+++|++|++++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~-~~~-l~-~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISD-VSP-LA-NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCB-CGG-GT-TCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCc-ccc-cc-CCCCCCEEEccCCeeec
Confidence 33 7778888888888888874 333 33 68888888888888874
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=3.3e-22 Score=180.61 Aligned_cols=244 Identities=17% Similarity=0.144 Sum_probs=172.7
Q ss_pred CCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcC-c
Q 036656 63 CQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIP-D 141 (367)
Q Consensus 63 c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p-~ 141 (367)
|.+..|.|.. ++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|++++|.+.+.+| .
T Consensus 9 C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 6677777764 2233 344444 2578889999998884444568888999999999988865555 3
Q ss_pred cccCCCCCCE-EEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEccc-CcCcccCCcccCCC-
Q 036656 142 NISHCIKLES-LRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASA-NQFVGQIPATLSEL- 218 (367)
Q Consensus 142 ~~~~l~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~~- 218 (367)
.|.+++++++ +.++.|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 5777887765 55667888877677888889999999998888755555555667777888865 45554444455555
Q ss_pred CCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEe
Q 036656 219 KRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLG 298 (367)
Q Consensus 219 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 298 (367)
..++.|++++|.++ .++.......+|+++++.++...+.+|...+..+++|++|++++|+++ .+|. ..+.+|+.|.
T Consensus 154 ~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~ 229 (350)
T 4ay9_X 154 FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLR 229 (350)
T ss_dssp SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEE
T ss_pred hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhh
Confidence 36888899999887 445444556678888887644444788766657888999999999888 4554 2356677777
Q ss_pred ccCccCcccCCCCCCCCCCCEEEccCC
Q 036656 299 IPMNGFRGKVPSFGNLHKLQRVIISMN 325 (367)
Q Consensus 299 l~~n~~~~~~~~~~~~~~L~~L~l~~n 325 (367)
+.++.-...+|.+..+++|+.+++.++
T Consensus 230 ~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred hccCCCcCcCCCchhCcChhhCcCCCC
Confidence 666655556777888888888888754
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=2.5e-22 Score=191.01 Aligned_cols=206 Identities=22% Similarity=0.310 Sum_probs=167.9
Q ss_pred CCCCCCCCC-----Cccce-EecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEE
Q 036656 55 SWNYSRHFC-----QWKGV-TCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRIL 128 (367)
Q Consensus 55 ~w~~~~~~c-----~~~~~-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 128 (367)
.|..+.+.| .|.++ .|.. .+++.|+++++.+++ +|..+ +++|++|++++|+++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 465555667 68888 6764 479999999999987 66655 378999999999998 677 457899999
Q ss_pred EccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCc
Q 036656 129 RLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFV 208 (367)
Q Consensus 129 ~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (367)
++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999999995 777 655 99999999999986 555 67899999999999985 665 5689999999999998
Q ss_pred ccCCcccCCCCCCCEEEeecCcCccccCccccCCCCC-------CEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCc
Q 036656 209 GQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTL-------SDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFT 281 (367)
Q Consensus 209 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 281 (367)
+ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..++ .+++|++|++++|.++
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLS 243 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSCC
T ss_pred C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcCC
Confidence 6 665 55 89999999999998 6666 543 66 99999999998 7888877 4899999999999999
Q ss_pred cccchhhhCC
Q 036656 282 GPIPASISNA 291 (367)
Q Consensus 282 ~~~~~~l~~l 291 (367)
+..|..+..+
T Consensus 244 ~~~p~~l~~l 253 (571)
T 3cvr_A 244 SRIRESLSQQ 253 (571)
T ss_dssp HHHHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 8888877654
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.8e-22 Score=167.48 Aligned_cols=171 Identities=19% Similarity=0.193 Sum_probs=92.5
Q ss_pred CEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecC
Q 036656 150 ESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGN 229 (367)
Q Consensus 150 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 229 (367)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555555 233332 345666666666666444444556666666666666666444444555666666666666
Q ss_pred cCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCC
Q 036656 230 KLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVP 309 (367)
Q Consensus 230 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 309 (367)
.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 665444444555566666666666555 233322224555555555555555433333455555555555555443
Q ss_pred CCCCCCCCCEEEccCCcCCCc
Q 036656 310 SFGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 310 ~~~~~~~L~~L~l~~n~l~~~ 330 (367)
+.+++|+.|+++.|+++|.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTT
T ss_pred --cCCCCHHHHHHHHHhCCce
Confidence 2344555555555555555
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.5e-21 Score=161.68 Aligned_cols=133 Identities=23% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCCCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcC
Q 036656 61 HFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIP 140 (367)
Q Consensus 61 ~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p 140 (367)
..|.|.++.|...+ +. .+|..+ .++|++|++++|++++..+..+.++++|++|++++|.+++..+
T Consensus 5 C~C~~~~v~c~~~~------------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYSQG------------RT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCSSC------------CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecCCC------------cc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 45788888886421 11 122222 3467777777777765444556666666666666666664433
Q ss_pred ccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCc
Q 036656 141 DNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFV 208 (367)
Q Consensus 141 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (367)
..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 44555666666666666655443334455555555555555544333333344444444444444443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.1e-21 Score=177.14 Aligned_cols=239 Identities=18% Similarity=0.134 Sum_probs=185.5
Q ss_pred cEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCC-CcCCCCCCCcE-EEcc
Q 036656 102 RVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVP-GKLGSLPKLRI-LVIH 179 (367)
Q Consensus 102 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~-L~l~ 179 (367)
++++.++++++ .+|..+ .+++++|++++|+++...+..|.++++|++|++++|.+.+.++ ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888998 678766 3689999999999994444579999999999999999876555 46788888775 5567
Q ss_pred cccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeec-CcCccccCccccCCC-CCCEEECCCCcCcc
Q 036656 180 SNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGG-NKLSGEIPFSIYNLS-TLSDFHFPFNQLRG 257 (367)
Q Consensus 180 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~ 257 (367)
.|.+....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 7888877788899999999999999999876666666777888999976 456644445566654 6899999999998
Q ss_pred cCChhhhcCCCCCCEEEeec-CcCccccc-hhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCcCCCch
Q 036656 258 SLPSDLGFTLPNLEVLNLGA-NQFTGPIP-ASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNGEKDDL 335 (367)
Q Consensus 258 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 335 (367)
.++...+ ...+|+++++.+ |.++ .+| ..+..+++|++|++++|+++...+. .+.+|+.|.+.++.--..+|
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP--- 240 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP--- 240 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC---
T ss_pred CCChhhc-cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC---
Confidence 6777666 467899999985 6666 555 5678999999999999999865443 35567777766653333322
Q ss_pred hhhhhhcCCCCCCEEeCcCC
Q 036656 336 EFVNSLVNASRLELLQININ 355 (367)
Q Consensus 336 ~~~~~l~~~~~L~~L~l~~n 355 (367)
.+.++++|+.+++.++
T Consensus 241 ----~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 ----TLEKLVALMEASLTYP 256 (350)
T ss_dssp ----CTTTCCSCCEEECSCH
T ss_pred ----CchhCcChhhCcCCCC
Confidence 3677899999999864
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=2.4e-21 Score=184.19 Aligned_cols=181 Identities=25% Similarity=0.356 Sum_probs=150.8
Q ss_pred CCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcc
Q 036656 124 RLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSAS 203 (367)
Q Consensus 124 ~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 203 (367)
+|++|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999985 777663 78999999999998 566 457899999999999986 676 654 99999999
Q ss_pred cCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccc
Q 036656 204 ANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGP 283 (367)
Q Consensus 204 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 283 (367)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. + . ++|++|++++|+++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--~-~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--P-ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--C-TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--h-CCCCEEECcCCCCC-c
Confidence 999986 555 68999999999999985 555 57899999999999985 777 3 2 89999999999998 6
Q ss_pred cchhhhCCCCC-------CeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCC
Q 036656 284 IPASISNASNL-------MRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKD 333 (367)
Q Consensus 284 ~~~~l~~l~~L-------~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~ 333 (367)
+|. +.. +| +.|++++|.++. +|. +..+++|+.|+|++|++++.+|.
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 666 543 67 999999999995 554 77799999999999999988443
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=6.4e-23 Score=198.32 Aligned_cols=278 Identities=12% Similarity=0.078 Sum_probs=135.6
Q ss_pred cEEEEEcCCCCcccc----cCccccCCCCCcEEEccCCCCCC----CcchhhcCCCCCcEEEccCCCCCCCcCccccCCC
Q 036656 76 RVTALLLPSLLLQGS----LSPHIGNLSFLRVLSLKNNSFRN----EIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCI 147 (367)
Q Consensus 76 ~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~ 147 (367)
+++.++++++.+.+. ++.....+++|++|++++|.+++ .++..+.++++|++|++++|.+. .+|..+.+++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhh
Confidence 344444444444332 12223344555555555555541 23333344555555555555554 2444444455
Q ss_pred CCCEEEeeCCCCC---CCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCC-cccCCC-----
Q 036656 148 KLESLRLGFNELE---GKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP-ATLSEL----- 218 (367)
Q Consensus 148 ~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~----- 218 (367)
+|++|+++..... ...+..+..+++|+.++++++.. ..++..+..+++|++|++++|.+++... ..+..+
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 5555555432111 11122233344444444443221 1233333444555555555555432211 122344
Q ss_pred -------------------CCCCEEEeec-----------CcCccc-cCccccCCCCCCEEECCCCcCcccCChhhhcCC
Q 036656 219 -------------------KRMRYISFGG-----------NKLSGE-IPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTL 267 (367)
Q Consensus 219 -------------------~~L~~L~l~~-----------n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 267 (367)
++|++|++++ +.+++. ++.....+++|++|+++.+.+++..+..+...+
T Consensus 323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 4455555541 233221 111223355555555555555544444443335
Q ss_pred CCCCEEEee----cCcCccc-----cchhhhCCCCCCeEeccCcc--CcccCCC--CCCCCCCCEEEccCCcCCCcCCCc
Q 036656 268 PNLEVLNLG----ANQFTGP-----IPASISNASNLMRLGIPMNG--FRGKVPS--FGNLHKLQRVIISMNHLGNGEKDD 334 (367)
Q Consensus 268 ~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~l~~n~--~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~ 334 (367)
++|++|+++ .|.+++. ++..+..+++|++|++++|. +++.... ...+++|+.|++++|++++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~---- 478 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE---- 478 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH----
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH----
Confidence 666666664 3445432 22334456666666665432 4433222 23478888999988887753
Q ss_pred hhhhhhhcCCCCCCEEeCcCCeeeee
Q 036656 335 LEFVNSLVNASRLELLQININNFGGM 360 (367)
Q Consensus 335 ~~~~~~l~~~~~L~~L~l~~n~l~g~ 360 (367)
.++..+..+++|++|++++|.+++.
T Consensus 479 -~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 479 -GLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp -HHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred -HHHHHHhcCcccCeeeccCCCCcHH
Confidence 1455667889999999999988754
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.4e-22 Score=195.92 Aligned_cols=279 Identities=13% Similarity=0.045 Sum_probs=194.7
Q ss_pred CcEEEEEcCCCCcc----cccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCC---------------
Q 036656 75 QRVTALLLPSLLLQ----GSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTF--------------- 135 (367)
Q Consensus 75 ~~v~~l~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l--------------- 135 (367)
+.++.++++++.+. +.++..+.++++|++|++++|.+.+ ++..+.++++|++|+++....
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 57889999998886 3445556678999999999988764 666777777777777764211
Q ss_pred -----------CCCcCccccCCCCCCEEEeeCCCCCCCCC-CcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcc
Q 036656 136 -----------GGQIPDNISHCIKLESLRLGFNELEGKVP-GKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSAS 203 (367)
Q Consensus 136 -----------~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 203 (367)
...+|..+..+++|++|++++|.+++... ..+..+++|++|+++++.....++.....+++|++|+++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 11344445556677777777776543222 224667777777776332222222223456788888888
Q ss_pred -----------cCcCcccC-CcccCCCCCCCEEEeecCcCccccCccccC-CCCCCEEECC----CCcCccc-----CCh
Q 036656 204 -----------ANQFVGQI-PATLSELKRMRYISFGGNKLSGEIPFSIYN-LSTLSDFHFP----FNQLRGS-----LPS 261 (367)
Q Consensus 204 -----------~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~----~n~~~~~-----~~~ 261 (367)
.+.+++.. ......+++|++|+++.+.+++..+..+.. +++|++|+++ .+.+++. ++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 34554332 222345899999999999998766666655 8999999996 5667642 222
Q ss_pred hhhcCCCCCCEEEeecCc--Cccccchhhh-CCCCCCeEeccCccCccc-CCC-CCCCCCCCEEEccCCcCCCcCCCchh
Q 036656 262 DLGFTLPNLEVLNLGANQ--FTGPIPASIS-NASNLMRLGIPMNGFRGK-VPS-FGNLHKLQRVIISMNHLGNGEKDDLE 336 (367)
Q Consensus 262 ~~~~~~~~L~~L~l~~n~--l~~~~~~~l~-~l~~L~~L~l~~n~~~~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~ 336 (367)
.+. .+++|++|++++|. +++..+..+. .+++|++|++++|.+++. ++. +..+++|+.|++++|++++. .
T Consensus 431 ~~~-~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~ 504 (592)
T 3ogk_B 431 LLI-GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER-----A 504 (592)
T ss_dssp HHH-HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH-----H
T ss_pred HHH-hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH-----H
Confidence 233 58999999998654 6655555554 489999999999999873 344 67889999999999998654 1
Q ss_pred hhhhhcCCCCCCEEeCcCCeeeee
Q 036656 337 FVNSLVNASRLELLQININNFGGM 360 (367)
Q Consensus 337 ~~~~l~~~~~L~~L~l~~n~l~g~ 360 (367)
.+.....+++|+.|++++|++++.
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhcCccCeeECcCCcCCHH
Confidence 344456799999999999999865
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.1e-19 Score=154.04 Aligned_cols=163 Identities=24% Similarity=0.302 Sum_probs=108.7
Q ss_pred CCCCCCCCCCCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 036656 54 SSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNN 133 (367)
Q Consensus 54 ~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 133 (367)
..|......|.|.++.|... + + ..+|..+. ++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~--~----------l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK--R----------H-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS--C----------C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccCC--C----------c-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 34556678899999999753 2 1 12333332 67888888888888777777888888888888888
Q ss_pred CCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCc
Q 036656 134 TFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPA 213 (367)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 213 (367)
.+....+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 887444455677777777777777777555555667777777777777766 5565566666666666666666544444
Q ss_pred ccCCCCCCCEEEeecCcCc
Q 036656 214 TLSELKRMRYISFGGNKLS 232 (367)
Q Consensus 214 ~l~~~~~L~~L~l~~n~~~ 232 (367)
.+..+++|+.|++++|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 4555555555555555554
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=9.5e-20 Score=175.00 Aligned_cols=171 Identities=25% Similarity=0.373 Sum_probs=83.0
Q ss_pred cCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcE
Q 036656 96 GNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRI 175 (367)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 175 (367)
..++.|+.|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|+.|+|++|.+.+ + +.+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 445556666666666542 22 355566666666666665532 22 5555666666666665553 1 24455555555
Q ss_pred EEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcC
Q 036656 176 LVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQL 255 (367)
Q Consensus 176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 255 (367)
|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|++|+|++|.+
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 5555555542 1 2344445555555555554432 334444445555554444443322 44444444444444444
Q ss_pred cccCChhhhcCCCCCCEEEeecCcCc
Q 036656 256 RGSLPSDLGFTLPNLEVLNLGANQFT 281 (367)
Q Consensus 256 ~~~~~~~~~~~~~~L~~L~l~~n~l~ 281 (367)
++ ++ .+. .+++|+.|++++|++.
T Consensus 188 ~~-l~-~l~-~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SD-LR-ALA-GLKNLDVLELFSQECL 210 (605)
T ss_dssp CB-CG-GGT-TCTTCSEEECCSEEEE
T ss_pred CC-Ch-HHc-cCCCCCEEEccCCcCc
Confidence 42 22 122 3444444444444443
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.8e-19 Score=163.29 Aligned_cols=177 Identities=23% Similarity=0.245 Sum_probs=144.4
Q ss_pred cEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCcccc-CCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEccc
Q 036656 102 RVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNIS-HCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHS 180 (367)
Q Consensus 102 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 180 (367)
+.+++++++++ .+|..+. +.++.|++++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57899999887 5776554 4689999999999966666676 899999999999999977777899999999999999
Q ss_pred ccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccc---cCCCCCCEEECCCCcCcc
Q 036656 181 NNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSI---YNLSTLSDFHFPFNQLRG 257 (367)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~~~~ 257 (367)
|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 99987666778899999999999999988878889999999999999999985443444 56889999999999998
Q ss_pred cCChhhhcCCCC--CCEEEeecCcCcc
Q 036656 258 SLPSDLGFTLPN--LEVLNLGANQFTG 282 (367)
Q Consensus 258 ~~~~~~~~~~~~--L~~L~l~~n~l~~ 282 (367)
.+|...+..++. ++.|++++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 556543335665 4889999998863
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.9e-19 Score=158.12 Aligned_cols=187 Identities=19% Similarity=0.310 Sum_probs=145.2
Q ss_pred EEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcC
Q 036656 128 LRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF 207 (367)
Q Consensus 128 L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 207 (367)
+.+..+.+.... .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 344555554322 234678899999999988743 3 47788999999999999885433 78889999999999998
Q ss_pred cccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchh
Q 036656 208 VGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPAS 287 (367)
Q Consensus 208 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 287 (367)
++ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++ + ..+. .+++|++|++++|++++..+
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCCGG--
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhc-cCCCCCEEEccCCccccchh--
Confidence 75 3 3488889999999999988753 467788899999999998874 3 3344 58899999999999885444
Q ss_pred hhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCcCCCc
Q 036656 288 ISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 288 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 330 (367)
+..+++|+.|++++|.+++ ++.+..+++|+.|++++|+++..
T Consensus 174 l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEECC
T ss_pred hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccCC
Confidence 7888899999999998885 45578888999999999988764
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=8.8e-20 Score=160.26 Aligned_cols=171 Identities=25% Similarity=0.372 Sum_probs=106.9
Q ss_pred cCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcE
Q 036656 96 GNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRI 175 (367)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 175 (367)
..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 456667777777777653 33 36667777777777777763 333 6677777777777777664 2 23666677777
Q ss_pred EEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcC
Q 036656 176 LVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQL 255 (367)
Q Consensus 176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 255 (367)
|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 77777766532 3455666677777766666643 455666666666666666664333 56666666666666666
Q ss_pred cccCChhhhcCCCCCCEEEeecCcCc
Q 036656 256 RGSLPSDLGFTLPNLEVLNLGANQFT 281 (367)
Q Consensus 256 ~~~~~~~~~~~~~~L~~L~l~~n~l~ 281 (367)
+ .++. +. .+++|+.|++++|+++
T Consensus 191 ~-~l~~-l~-~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 S-DLRA-LA-GLKNLDVLELFSQECL 213 (291)
T ss_dssp C-BCGG-GT-TCTTCSEEEEEEEEEE
T ss_pred C-CChh-hc-cCCCCCEEECcCCccc
Confidence 5 3333 32 4666666666666665
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=3.9e-19 Score=149.54 Aligned_cols=152 Identities=22% Similarity=0.282 Sum_probs=92.6
Q ss_pred EEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCc
Q 036656 175 ILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQ 254 (367)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 254 (367)
.++.+++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444444444 3343332 455566666666555444455566666666666666665555666666666666666666
Q ss_pred CcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCc
Q 036656 255 LRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 330 (367)
++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+. +..+++|+.|++++|++...
T Consensus 92 l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 66 44544443566777777777777655566666677777777777777765555 66677777777777776654
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=4.8e-19 Score=149.00 Aligned_cols=133 Identities=23% Similarity=0.294 Sum_probs=82.4
Q ss_pred CCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEc
Q 036656 99 SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVI 178 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 178 (367)
+.+++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 46777777777777555556667777777777777776555666667777777777777666444444556666666666
Q ss_pred ccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcC
Q 036656 179 HSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKL 231 (367)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 231 (367)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66666655555555555566665555555544444455555555555555544
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.6e-19 Score=173.53 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=113.9
Q ss_pred CcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEccc
Q 036656 101 LRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHS 180 (367)
Q Consensus 101 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 180 (367)
+..+.+..+.+++..+ +..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3334455555543222 345666666666666665 333 36666667777777666664433 56666677777766
Q ss_pred ccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCC
Q 036656 181 NNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLP 260 (367)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 260 (367)
|.+.+ ++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 66653 22 466666677777766666542 3456666677777777666643 456666667777777766664333
Q ss_pred hhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCccc
Q 036656 261 SDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGK 307 (367)
Q Consensus 261 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 307 (367)
+. .+++|++|+|++|++++ ++ .+..+++|+.|+|++|.+.+.
T Consensus 171 --l~-~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LA-GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GT-TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred --hc-cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 32 46667777777776663 33 356666677777776666543
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.81 E-value=2.3e-21 Score=190.63 Aligned_cols=198 Identities=19% Similarity=0.158 Sum_probs=80.3
Q ss_pred CCHHhHHHHHHHHHhCCCCCCCCCCCCCC-CCCCCCccceEecCCCCcEEEEEcCCCCcccccCccccCCCCCcEEEccC
Q 036656 30 SNETDQLALLEFKAKITYDPLEVLSSWNY-SRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKN 108 (367)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 108 (367)
..+.++.++.++..+.....+.....|.. ....+.|.+..+.. ++++.+++.++.+... +.. .++.++|+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~ 200 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQA-----LLQHKKLSQ 200 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhh-----HhhcCccCc
Confidence 45677888999988776555555556643 34556788877765 6799999988887753 222 233334444
Q ss_pred CCCCC---------CcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcc
Q 036656 109 NSFRN---------EIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIH 179 (367)
Q Consensus 109 ~~l~~---------~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 179 (367)
+.+.+ ..+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+++
T Consensus 201 ~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 201 YSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred ccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence 33321 23455556666666666666665 55555555666666666666655 455555555666666666
Q ss_pred cccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccc
Q 036656 180 SNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSI 239 (367)
Q Consensus 180 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l 239 (367)
+|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+
T Consensus 279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66555 44555555555555555555554 444445555555555555555554444433
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=4.3e-19 Score=160.84 Aligned_cols=176 Identities=19% Similarity=0.179 Sum_probs=146.8
Q ss_pred EEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhc-CCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCC
Q 036656 79 ALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIG-YLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157 (367)
Q Consensus 79 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n 157 (367)
.++++++.+.. +|..+. +.++.|+|++|++++..+..+. ++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45566666654 454443 4689999999999977777777 8999999999999999777778999999999999999
Q ss_pred CCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCccc---CCCCCCCEEEeecCcCccc
Q 036656 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATL---SELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 158 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~ 234 (367)
.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+ ..+++|+.|++++|.+++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9997777789999999999999999998778899999999999999999986544445 5689999999999999865
Q ss_pred cCccccCCCC--CCEEECCCCcCcc
Q 036656 235 IPFSIYNLST--LSDFHFPFNQLRG 257 (367)
Q Consensus 235 ~~~~l~~~~~--L~~L~l~~n~~~~ 257 (367)
.+..+..++. ++.|++++|.+..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhhhccHhhcceEEecCCCccC
Confidence 5566777776 4889999999874
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=146.80 Aligned_cols=155 Identities=20% Similarity=0.218 Sum_probs=129.4
Q ss_pred cEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCC
Q 036656 174 RILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP-ATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPF 252 (367)
Q Consensus 174 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 252 (367)
+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58899999887 5676553 467899999999987644 4578899999999999999877777899999999999999
Q ss_pred CcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcC
Q 036656 253 NQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGE 331 (367)
Q Consensus 253 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~ 331 (367)
|.+++ ++...+..+++|++|++++|++++..|..+..+++|++|++++|++++..|. +..+++|+.|++++|++.+..
T Consensus 91 N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCc-cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99984 4444344789999999999999977788888999999999999999988776 889999999999999998764
Q ss_pred C
Q 036656 332 K 332 (367)
Q Consensus 332 ~ 332 (367)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 3
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=8.7e-19 Score=147.41 Aligned_cols=151 Identities=23% Similarity=0.259 Sum_probs=91.3
Q ss_pred EEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcc-hhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCC
Q 036656 79 ALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIP-RAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157 (367)
Q Consensus 79 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n 157 (367)
.++++++.++. +|..+. +.+++|++++|.+++..+ ..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555553 344332 345677777777765433 34666777777777777776555556666777777777777
Q ss_pred CCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCc
Q 036656 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLS 232 (367)
Q Consensus 158 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 232 (367)
.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 666555555666666666666666666555555556666666666666665554555555555555555555544
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=2.1e-18 Score=146.02 Aligned_cols=151 Identities=23% Similarity=0.293 Sum_probs=91.5
Q ss_pred cEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccc
Q 036656 102 RVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSN 181 (367)
Q Consensus 102 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (367)
+.++.++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.++...+..+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45666666665 4554332 56777777777776655666666677777777777666444445566666666666666
Q ss_pred cccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCc
Q 036656 182 NLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLR 256 (367)
Q Consensus 182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 256 (367)
.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 666444444556666666666666665 44555555666666666666665444444555555555555555554
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=4.6e-19 Score=146.58 Aligned_cols=152 Identities=14% Similarity=0.273 Sum_probs=72.2
Q ss_pred CCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCE
Q 036656 168 GSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSD 247 (367)
Q Consensus 168 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 247 (367)
..+++|++|++++|.+. .++ .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455666666666555 333 35555566666666554431 234555555555555555555444444555555555
Q ss_pred EECCCCcCcccCChhhhcCCCCCCEEEeecCc-CccccchhhhCCCCCCeEeccCccCcccCCCCCCCCCCCEEEccCCc
Q 036656 248 FHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQ-FTGPIPASISNASNLMRLGIPMNGFRGKVPSFGNLHKLQRVIISMNH 326 (367)
Q Consensus 248 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 326 (367)
|++++|.+++..+..+. .+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++.+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 55555555433333333 34444444444444 32 232 23444444444444444442 2233344444444444444
Q ss_pred C
Q 036656 327 L 327 (367)
Q Consensus 327 l 327 (367)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=4.6e-21 Score=185.36 Aligned_cols=278 Identities=15% Similarity=0.155 Sum_probs=151.3
Q ss_pred CcEEEEEcCCCCcccccCcccc-CCCCCcEEEccCC-CCCCC-cchhhcCCCCCcEEEccCCCCCCCcCccc----cCCC
Q 036656 75 QRVTALLLPSLLLQGSLSPHIG-NLSFLRVLSLKNN-SFRNE-IPRAIGYLFRLRILRLDNNTFGGQIPDNI----SHCI 147 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~l~~~-~~~~l~~l~~L~~L~l~~~~l~~~~p~~~----~~l~ 147 (367)
+++++++++++.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5788899988888877666665 6888888888888 45432 44444578888888888888664433333 3566
Q ss_pred CCCEEEeeCCC--CCCC-CCCcCCCCCCCcEEEccccc-ccc--------------------------------------
Q 036656 148 KLESLRLGFNE--LEGK-VPGKLGSLPKLRILVIHSNN-LSG-------------------------------------- 185 (367)
Q Consensus 148 ~L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~l~~n~-~~~-------------------------------------- 185 (367)
+|++|++++|. +... +...+..+++|++|++++|. +.+
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 88888888775 2110 11112345677777776651 100
Q ss_pred ---------------cCCCCCCCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEEeecCcCcc-ccCccccCCCCCCEE
Q 036656 186 ---------------EIPSSFGNLSSLQVLSASANQFVGQIP-ATLSELKRMRYISFGGNKLSG-EIPFSIYNLSTLSDF 248 (367)
Q Consensus 186 ---------------~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L 248 (367)
.++..+..+++|++|++++|.+++... ..+..+++|+.|++++| +.+ .++.....+++|++|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 011111134677777777776553221 22456677777777766 321 112222235556666
Q ss_pred ECCC---------CcCcccCChhhhcCCCCCCEEEeecCcCccccchh--------------------------------
Q 036656 249 HFPF---------NQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPAS-------------------------------- 287 (367)
Q Consensus 249 ~l~~---------n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------------------------------- 287 (367)
++.+ +.+++.....+...+++|++|.+..+.+++..+..
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 5522 23322211122212444444444444444332222
Q ss_pred ----hhCCCCCCeEeccCccCcccCCC-CCC-CCCCCEEEccCCcCCCcCCCchhhhhhh-cCCCCCCEEeCcCCeeeee
Q 036656 288 ----ISNASNLMRLGIPMNGFRGKVPS-FGN-LHKLQRVIISMNHLGNGEKDDLEFVNSL-VNASRLELLQININNFGGM 360 (367)
Q Consensus 288 ----l~~l~~L~~L~l~~n~~~~~~~~-~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~n~l~g~ 360 (367)
+..+++|+.|++++ .+++.... +.. +++|+.|++++|.+++. .+..+ ..+++|++|+|++|.+++.
T Consensus 424 ~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~------~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL------GMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH------HHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH------HHHHHHhcCCCcCEEECcCCCCcHH
Confidence 23344444444443 33322211 222 67788888888777654 23333 5688888888888887654
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=6.6e-21 Score=184.27 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=94.0
Q ss_pred CCCCCEEEeecCcCccccCcccc-CCCCCCEEECC--C----CcCcccCCh-----hhhcCCCCCCEEEeecCcCccccc
Q 036656 218 LKRMRYISFGGNKLSGEIPFSIY-NLSTLSDFHFP--F----NQLRGSLPS-----DLGFTLPNLEVLNLGANQFTGPIP 285 (367)
Q Consensus 218 ~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~--~----n~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~ 285 (367)
+++|+.|.++.+.+++.....+. .+++|++|+++ + +.++ ..|. .+...+++|++|++++ .+++..+
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 56666666666666544333333 47888888888 3 4444 2221 1123578999999977 6665555
Q ss_pred hhhhC-CCCCCeEeccCccCcccCCC-C-CCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeee
Q 036656 286 ASISN-ASNLMRLGIPMNGFRGKVPS-F-GNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGG 359 (367)
Q Consensus 286 ~~l~~-l~~L~~L~l~~n~~~~~~~~-~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g 359 (367)
..+.. +++|+.|++++|.+++.... + ..+++|+.|++++|++++. ........+++|+.|++++|+++.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-----ALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH-----HHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH-----HHHHHHHhCCCCCEEeeeCCCCCH
Confidence 55654 89999999999998765443 3 6789999999999998543 122345568999999999998854
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=1e-18 Score=144.47 Aligned_cols=130 Identities=17% Similarity=0.271 Sum_probs=60.1
Q ss_pred CCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEE
Q 036656 121 YLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVL 200 (367)
Q Consensus 121 ~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 200 (367)
.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555554 333 3455555555555555333 12234444555555555555444344444444555555
Q ss_pred EcccCcCcccCCcccCCCCCCCEEEeecCc-CccccCccccCCCCCCEEECCCCcCc
Q 036656 201 SASANQFVGQIPATLSELKRMRYISFGGNK-LSGEIPFSIYNLSTLSDFHFPFNQLR 256 (367)
Q Consensus 201 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~ 256 (367)
++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 555554444334444444444444444444 22 222 2334444444444444443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=1.5e-21 Score=186.43 Aligned_cols=205 Identities=16% Similarity=0.132 Sum_probs=128.1
Q ss_pred CCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCC-------------CCCCCCCcCCCCCCCcEEE-ccccccccc
Q 036656 121 YLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNE-------------LEGKVPGKLGSLPKLRILV-IHSNNLSGE 186 (367)
Q Consensus 121 ~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~~~~~ 186 (367)
..++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3455555555555555 555555555555555554432 3334455556666666666 4444321
Q ss_pred CCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcC
Q 036656 187 IPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFT 266 (367)
Q Consensus 187 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 266 (367)
.|+.+.+..|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+. .
T Consensus 424 ---------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~ 484 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-A 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-G
T ss_pred ---------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-c
Confidence 22333344444432211 246777777777764 454 777777778888877777 6777665 5
Q ss_pred CCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccC-CC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCC
Q 036656 267 LPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKV-PS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNA 344 (367)
Q Consensus 267 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 344 (367)
+++|++|++++|++++ +| .+..+++|+.|++++|.+++.. |. ++.+++|+.|+|++|++++.++. ....+..+
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~l~~~l 559 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI---QERLAEML 559 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC---TTHHHHHC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH---HHHHHHHC
Confidence 7788888888888874 55 6777888888888888887764 55 77788888888888888776543 22234457
Q ss_pred CCCCEEeC
Q 036656 345 SRLELLQI 352 (367)
Q Consensus 345 ~~L~~L~l 352 (367)
++|+.|++
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 77777764
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=5.8e-22 Score=189.22 Aligned_cols=203 Identities=15% Similarity=0.136 Sum_probs=114.4
Q ss_pred cCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCC-------------CCCCcCccccCCCCCCEEE-eeCCCCCC
Q 036656 96 GNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNT-------------FGGQIPDNISHCIKLESLR-LGFNELEG 161 (367)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-------------l~~~~p~~~~~l~~L~~L~-l~~n~~~~ 161 (367)
...++|+.|++++|+++ .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 34556666666666664 566666666666666665443 3334455555555565555 343321
Q ss_pred CCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccC
Q 036656 162 KVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYN 241 (367)
Q Consensus 162 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 241 (367)
..|+.+.+.+|.+... +. ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..
T Consensus 423 ---------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 2344445555554422 11 135666666666654 343 566666666666666666 55666666
Q ss_pred CCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCcccc-chhhhCCCCCCeEeccCccCcccCCCC----CCCCC
Q 036656 242 LSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPI-PASISNASNLMRLGIPMNGFRGKVPSF----GNLHK 316 (367)
Q Consensus 242 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~~~ 316 (367)
+++|++|++++|.+++ +| .+. .+++|++|++++|++++.. |..+..+++|+.|++++|.+++.++.. ..+++
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred CCCCCEEECCCCCCCC-Cc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 6666666666666663 44 333 4666666666666666443 566666666666666666666554432 23566
Q ss_pred CCEEEc
Q 036656 317 LQRVII 322 (367)
Q Consensus 317 L~~L~l 322 (367)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 666643
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2.1e-18 Score=149.10 Aligned_cols=171 Identities=20% Similarity=0.268 Sum_probs=113.1
Q ss_pred CCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEE
Q 036656 97 NLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRIL 176 (367)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 176 (367)
.+..+..++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 34455566677777663 33 4566777777777777776 455 56677777777777777775433 6677777777
Q ss_pred EcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCc
Q 036656 177 VIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLR 256 (367)
Q Consensus 177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 256 (367)
++++|.+++ ++. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++. + .+..+++|++|++++|.++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777777763 333 222 7777777777777643 3467777777777777777643 2 5667777777777777776
Q ss_pred ccCChhhhcCCCCCCEEEeecCcCccc
Q 036656 257 GSLPSDLGFTLPNLEVLNLGANQFTGP 283 (367)
Q Consensus 257 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ 283 (367)
+. ..+. .+++|++|++++|.+.+.
T Consensus 164 ~~--~~l~-~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLT-RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTST-TCCCCCEEEEEEEEEECC
T ss_pred ch--HHhc-cCCCCCEEeCCCCcccCC
Confidence 43 3333 577777777777777643
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.1e-17 Score=144.53 Aligned_cols=166 Identities=19% Similarity=0.268 Sum_probs=131.9
Q ss_pred EEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeC
Q 036656 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGF 156 (367)
Q Consensus 77 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~ 156 (367)
++.++++.+.+.+.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 444556666665443 4678889999999999887 455 68889999999999999884 444 88899999999999
Q ss_pred CCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccC
Q 036656 157 NELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIP 236 (367)
Q Consensus 157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 236 (367)
|.+++ ++. +.. ++|++|++++|.+++ + ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.+++.
T Consensus 95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 99885 333 223 889999999998875 3 3578889999999999998864 3 678889999999999999865
Q ss_pred ccccCCCCCCEEECCCCcCcc
Q 036656 237 FSIYNLSTLSDFHFPFNQLRG 257 (367)
Q Consensus 237 ~~l~~~~~L~~L~l~~n~~~~ 257 (367)
..+..+++|++|++++|.+++
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHhccCCCCCEEeCCCCcccC
Confidence 668888999999999998873
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.8e-17 Score=135.19 Aligned_cols=130 Identities=23% Similarity=0.325 Sum_probs=69.3
Q ss_pred cEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCC-cCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEccc
Q 036656 126 RILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPG-KLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASA 204 (367)
Q Consensus 126 ~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 204 (367)
++++++++.++ .+|..+.. +|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34445554444 44443322 555555555555433332 244555555555555555544455555555555555555
Q ss_pred CcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCccc
Q 036656 205 NQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGS 258 (367)
Q Consensus 205 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 258 (367)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555555555555556666666666666555555555566666666666655543
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=2.8e-17 Score=132.14 Aligned_cols=141 Identities=18% Similarity=0.138 Sum_probs=89.8
Q ss_pred CCCCEEEeecCcCc-cccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeE
Q 036656 219 KRMRYISFGGNKLS-GEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRL 297 (367)
Q Consensus 219 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 297 (367)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+. .+++|++|++++|++++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP-KLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC-CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc-cCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45566666666555 44555555566666666666665532 2222 46777777777777775566666667777777
Q ss_pred eccCccCcccC--CCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeeeeeCCCCCC
Q 036656 298 GIPMNGFRGKV--PSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFGGMLPEAVG 366 (367)
Q Consensus 298 ~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~g~iP~~~~ 366 (367)
++++|.+++.. ..+..+++|+.|++++|++++..+. ....+..+++|+.|++++|.+. .+|++.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~ 167 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY---RESVFKLLPQLTYLDGYDREDQ-EAPDSDA 167 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH---HHHHHTTCSSCCEETTEETTSC-BCCSSSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH---HHHHHHhCccCcEecCCCCChh-hcccccc
Confidence 77777777643 2377777888888888877764220 1135667788888888888777 6676543
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.7e-18 Score=170.24 Aligned_cols=182 Identities=21% Similarity=0.227 Sum_probs=82.8
Q ss_pred CCCcEEEccCCCCCCCcchhhcCCCCCcEEEc-----cCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCC
Q 036656 99 SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRL-----DNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKL 173 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l-----~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 173 (367)
+.++.|++.++.+.. .+..+.....|+.+.+ ..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 456777787777764 3333322223332222 222333 34555666666677777666666 455555566666
Q ss_pred cEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCC
Q 036656 174 RILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFN 253 (367)
Q Consensus 174 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 253 (367)
++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 66666666666 55666666666666666666666 45666666666666666666665 55555666666666666666
Q ss_pred cCcccCChhhhcCCCCCCEEEeecCcCccccch
Q 036656 254 QLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPA 286 (367)
Q Consensus 254 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 286 (367)
.+++.+|..+......+..+++++|.+++.+|.
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 666555544431111122345566666554443
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.4e-17 Score=148.96 Aligned_cols=197 Identities=12% Similarity=0.096 Sum_probs=113.1
Q ss_pred CCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcC----cccCCcccCCCCC-
Q 036656 146 CIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF----VGQIPATLSELKR- 220 (367)
Q Consensus 146 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~~~~- 220 (367)
+++|+.+++.. .++...+..|..+++|+.+++..|.+....+..|..+.++..+....+.. .......+..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666665 55544445566666666666666665544445555555555554433111 0011111222222
Q ss_pred -------------------------CCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEe
Q 036656 221 -------------------------MRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNL 275 (367)
Q Consensus 221 -------------------------L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 275 (367)
++.+.+.++-...........+++|+++++++|+++ .++...+..+.+|+++++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEEC
Confidence 333333332111111111112677888888887776 666666667778888888
Q ss_pred ecCcCccccchhhhCCCCCC-eEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeC
Q 036656 276 GANQFTGPIPASISNASNLM-RLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQI 352 (367)
Q Consensus 276 ~~n~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l 352 (367)
.+| +.......|.++++|+ .+++.+ .++...+. |..+++|+.+++++|.++.. ....|.+|++|+.++.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I------~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL------GDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE------CTTTTCTTCCCCEEEC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc------chhhhcCCcchhhhcc
Confidence 777 6545556677777887 888877 66654444 77888888888877777765 3356677778877653
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.3e-16 Score=129.63 Aligned_cols=128 Identities=24% Similarity=0.295 Sum_probs=77.8
Q ss_pred EEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcch-hhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCC
Q 036656 79 ALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPR-AIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFN 157 (367)
Q Consensus 79 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n 157 (367)
.++++++.+. .+|..+.. .+++|++++|.+++..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3444555553 34443332 677777777777644433 3666677777777777776555666666666666666666
Q ss_pred CCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcc
Q 036656 158 ELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVG 209 (367)
Q Consensus 158 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (367)
.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 6665555556666666666666666665555556666666666666665553
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=7.8e-17 Score=129.54 Aligned_cols=37 Identities=32% Similarity=0.268 Sum_probs=14.7
Q ss_pred CCcEEEccCCCCC-CCcCccccCCCCCCEEEeeCCCCC
Q 036656 124 RLRILRLDNNTFG-GQIPDNISHCIKLESLRLGFNELE 160 (367)
Q Consensus 124 ~L~~L~l~~~~l~-~~~p~~~~~l~~L~~L~l~~n~~~ 160 (367)
+|++|++++|.++ +.+|..+..+++|++|++++|.++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~ 62 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI 62 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC
Confidence 3444444444433 233333333444444444444433
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.2e-16 Score=124.22 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=62.6
Q ss_pred CCCCEEEeecCcCc-cccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeE
Q 036656 219 KRMRYISFGGNKLS-GEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRL 297 (367)
Q Consensus 219 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 297 (367)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+. .+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP-KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC-CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh-cCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34444444444444 33444444444555555555544422 2222 34555555555555554444444445555555
Q ss_pred eccCccCcccC--CCCCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCc
Q 036656 298 GIPMNGFRGKV--PSFGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQIN 353 (367)
Q Consensus 298 ~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 353 (367)
++++|.+++.. ..+..+++|+.|++++|++++..+- ....+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY---RENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH---HHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH---HHHHHHHCCCcccccCC
Confidence 55555555421 2255555666666666655543110 01244555666666554
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.5e-15 Score=124.78 Aligned_cols=108 Identities=28% Similarity=0.417 Sum_probs=58.8
Q ss_pred CCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEc
Q 036656 99 SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVI 178 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 178 (367)
++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35666666666665 45555566666666666666665444445555555666666555555444445555555555555
Q ss_pred ccccccccCCCCCCCCCCCCEEEcccCcC
Q 036656 179 HSNNLSGEIPSSFGNLSSLQVLSASANQF 207 (367)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 207 (367)
++|.++...+..+..+++|++|++++|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55555533333344445555555554444
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=4.2e-16 Score=122.62 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=59.9
Q ss_pred CCCCEEEcccCcCc-ccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEE
Q 036656 195 SSLQVLSASANQFV-GQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVL 273 (367)
Q Consensus 195 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 273 (367)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+. .+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEE
Confidence 33444444444443 33344444444444444444444432 3344445555555555555433333332 35555555
Q ss_pred EeecCcCccc-cchhhhCCCCCCeEeccCccCcccCC---C-CCCCCCCCEEEcc
Q 036656 274 NLGANQFTGP-IPASISNASNLMRLGIPMNGFRGKVP---S-FGNLHKLQRVIIS 323 (367)
Q Consensus 274 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~-~~~~~~L~~L~l~ 323 (367)
++++|.+++. .+..+..+++|++|++++|.+++..+ . +..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555532 22444555555555555555554444 2 4455555555554
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=4e-15 Score=120.58 Aligned_cols=109 Identities=18% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEee
Q 036656 148 KLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFG 227 (367)
Q Consensus 148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 227 (367)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333333444444444444444443222333444444444444444443333334444444444444
Q ss_pred cCcCccccCccccCCCCCCEEECCCCcCc
Q 036656 228 GNKLSGEIPFSIYNLSTLSDFHFPFNQLR 256 (367)
Q Consensus 228 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 256 (367)
+|.+++..+..+..+++|++|++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 44444332233344444444444444444
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=3e-15 Score=122.98 Aligned_cols=126 Identities=24% Similarity=0.383 Sum_probs=69.5
Q ss_pred cEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccc
Q 036656 102 RVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSN 181 (367)
Q Consensus 102 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (367)
+++++++++++ .+|..+. +.|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 4454332 45666666666665 55556666666666666666666554455555566666666665
Q ss_pred cccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcC
Q 036656 182 NLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKL 231 (367)
Q Consensus 182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 231 (367)
.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55544444455555555555555555533333344444455444444444
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=7.7e-16 Score=137.62 Aligned_cols=197 Identities=13% Similarity=0.068 Sum_probs=144.0
Q ss_pred CCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccc----cccCCCCCCCCCCC
Q 036656 122 LFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNL----SGEIPSSFGNLSSL 197 (367)
Q Consensus 122 l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~l~~L 197 (367)
+++|+++++.+ .++..-+.+|.++++|+.+++..|.+....+..|..+.++..+....+.. .......+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 89999999988 77755566789999999999999988866677788877777777655321 11112233334444
Q ss_pred C--------------------------EEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECC
Q 036656 198 Q--------------------------VLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFP 251 (367)
Q Consensus 198 ~--------------------------~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 251 (367)
+ .+.+.++-...........+++|+.+++++|.++......|.++++|+++++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4 22222221110000001137899999999999986667789999999999999
Q ss_pred CCcCcccCChhhhcCCCCCC-EEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEc
Q 036656 252 FNQLRGSLPSDLGFTLPNLE-VLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVII 322 (367)
Q Consensus 252 ~n~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l 322 (367)
+| ++ .++...+..+++|+ .+++.+ .++...+..+.++++|+.+++++|.++...+. |.++++|+.+..
T Consensus 259 ~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 65 67777776899999 999998 77756677889999999999999999977776 999999998863
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=4.4e-15 Score=120.34 Aligned_cols=111 Identities=24% Similarity=0.239 Sum_probs=70.6
Q ss_pred CCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEc
Q 036656 99 SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVI 178 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 178 (367)
++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56777777777777555555667777777777777776444445566777777777777766554455566666666666
Q ss_pred ccccccccCCCCCCCCCCCCEEEcccCcCcc
Q 036656 179 HSNNLSGEIPSSFGNLSSLQVLSASANQFVG 209 (367)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (367)
++|.+++..+..+..+++|++|++++|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666654333334555666666666665553
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.4e-13 Score=125.91 Aligned_cols=261 Identities=11% Similarity=0.091 Sum_probs=183.4
Q ss_pred EEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeC
Q 036656 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGF 156 (367)
Q Consensus 77 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~ 156 (367)
++.+.+.+ .++..-...|.+. +|+.+.+..+ ++.....+|.+. +|+.+.+.+ .+...-+..|.++++|+.+++..
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 34455543 2333344456664 7899998766 654555667774 699999876 56645557788899999999998
Q ss_pred CCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccC
Q 036656 157 NELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIP 236 (367)
Q Consensus 157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 236 (367)
|.++......|. ..+|+.+.+..+ +.......|..+++|+.+++..+ ++......|.. .+|+.+.+.. .++....
T Consensus 190 n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~ 264 (401)
T 4fdw_A 190 TKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIAS 264 (401)
T ss_dssp SCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECT
T ss_pred CcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEECh
Confidence 888855445555 688999998754 55455677888899999998764 45445556666 7899999954 4554556
Q ss_pred ccccCCCCCCEEECCCCcCc----ccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-C
Q 036656 237 FSIYNLSTLSDFHFPFNQLR----GSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-F 311 (367)
Q Consensus 237 ~~l~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~ 311 (367)
..|.++++|+++++.++.+. ..++...+..+++|+.+++.+ .++..-...+.++.+|+.+.+..+ ++..... |
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 78888999999999887653 135555566788999999984 466455667788899999999654 5544444 8
Q ss_pred CCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCC-CCCEEeCcCCe
Q 036656 312 GNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNAS-RLELLQININN 356 (367)
Q Consensus 312 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~n~ 356 (367)
..+ +|+.+++.+|.+..... ..+..++ +++.|.+..+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~------~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFE------KVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCC------SSCCCSCTTCCEEEECGGG
T ss_pred CCC-CCCEEEEcCCCCccccc------ccccCCCCCccEEEeCHHH
Confidence 888 89999999987765422 3445553 67788777664
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.8e-13 Score=125.08 Aligned_cols=242 Identities=13% Similarity=0.104 Sum_probs=183.5
Q ss_pred CCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEE
Q 036656 97 NLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRIL 176 (367)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 176 (367)
.+..++.+.+.. .++..-..+|.++ +|+.+.+..+ ++..-..+|.+ .+|+.+.+.. .+.......|..+++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 456788888875 4554456677775 7999999776 66444556766 5799999985 5665666789999999999
Q ss_pred EcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCc
Q 036656 177 VIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLR 256 (367)
Q Consensus 177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 256 (367)
++..|.+.......|. +.+|+.+.+..+ ++......|..+++|+.+++..+ ++......|.+ .+|+.+.+.. .++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence 9999988854445555 689999999744 66666778899999999999875 55344556666 7899999954 455
Q ss_pred ccCChhhhcCCCCCCEEEeecCcCc-----cccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCc
Q 036656 257 GSLPSDLGFTLPNLEVLNLGANQFT-----GPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 257 ~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 330 (367)
.++...+..+++|+.+++.++.+. ......+.++++|+.+++.+ .++..... |..+++|+.+.+..+ ++..
T Consensus 261 -~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 261 -NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp -EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred -EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 566666668999999999988764 34456788899999999984 56655555 999999999999665 5544
Q ss_pred CCCchhhhhhhcCCCCCCEEeCcCCeee
Q 036656 331 EKDDLEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 331 ~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
-..+|.+| +|+.+++.+|.+.
T Consensus 338 ------~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 338 ------NFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ------CTTSSSSS-CCCEEEECCSSCC
T ss_pred ------cHHhCCCC-CCCEEEEcCCCCc
Confidence 23567888 9999999999776
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=5.4e-15 Score=119.69 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=58.3
Q ss_pred CCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEE
Q 036656 194 LSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVL 273 (367)
Q Consensus 194 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 273 (367)
+++|++|++++|.++. ++......++|+.|++++|.+++. ..+..+++|++|++++|.++ .+|+.++..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence 3444444444444442 222111122555555555555432 34444555555555555554 2332221235555555
Q ss_pred EeecCcCccccch--hhhCCCCCCeEeccCccCcccCCC----CCCCCCCCEEEccCCcC
Q 036656 274 NLGANQFTGPIPA--SISNASNLMRLGIPMNGFRGKVPS----FGNLHKLQRVIISMNHL 327 (367)
Q Consensus 274 ~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~L~l~~n~l 327 (367)
++++|++. .+|. .+..+++|+.|++++|.++..... +..+++|+.||+++|..
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555554 3333 344555555555555555432221 44455555555555543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=8.2e-15 Score=118.60 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=54.2
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCC
Q 036656 143 ISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMR 222 (367)
Q Consensus 143 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 222 (367)
+..+.+|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4455666666666666653 232222223566666666655532 3445555555555555555533223334455555
Q ss_pred EEEeecCcCccccCc--cccCCCCCCEEECCCCcCc
Q 036656 223 YISFGGNKLSGEIPF--SIYNLSTLSDFHFPFNQLR 256 (367)
Q Consensus 223 ~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~n~~~ 256 (367)
+|++++|.+. .+|. .+..+++|++|++++|.++
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 5555555553 2222 3444444444444444444
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=3.2e-17 Score=135.54 Aligned_cols=137 Identities=21% Similarity=0.220 Sum_probs=86.3
Q ss_pred ccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCC
Q 036656 214 TLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASN 293 (367)
Q Consensus 214 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 293 (367)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.... .+++|++|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH-HHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh-cCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 55566666777776666664 44 5666667777777777666 5555443 35677777777777764 44 4666777
Q ss_pred CCeEeccCccCcccCC--CCCCCCCCCEEEccCCcCCCcCCCc----hhhhhhhcCCCCCCEEeCcCCeee
Q 036656 294 LMRLGIPMNGFRGKVP--SFGNLHKLQRVIISMNHLGNGEKDD----LEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 294 L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
|+.|++++|.+++..+ .+..+++|+.|++++|++++..|.. ......+..+++|+.|| +|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777777765332 3667777777777777776653321 01123356677777776 55544
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.7e-17 Score=136.00 Aligned_cols=133 Identities=22% Similarity=0.265 Sum_probs=74.1
Q ss_pred CCCCCcEEEccCCCCCCCcch------hhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCC
Q 036656 97 NLSFLRVLSLKNNSFRNEIPR------AIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSL 170 (367)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~~~~------~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 170 (367)
....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 334444555555555544443 66667777777777776663 55 5666667777777766666 345444455
Q ss_pred CCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEEeecCcCccc
Q 036656 171 PKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIP-ATLSELKRMRYISFGGNKLSGE 234 (367)
Q Consensus 171 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~ 234 (367)
++|++|++++|.+++ +| .+..+++|++|++++|.++...+ ..+..+++|++|++++|.+.+.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 666666666666553 22 34445555555555555543211 2344555555555555555433
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=5.3e-13 Score=107.14 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=38.3
Q ss_pred CCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEc
Q 036656 99 SFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVI 178 (367)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 178 (367)
+.|++|++++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44455555555554444444444444444444444444333333344444444444444444333333444444444444
Q ss_pred ccccc
Q 036656 179 HSNNL 183 (367)
Q Consensus 179 ~~n~~ 183 (367)
++|.+
T Consensus 110 ~~N~~ 114 (170)
T 3g39_A 110 LNNPW 114 (170)
T ss_dssp CSSCB
T ss_pred CCCCC
Confidence 44433
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=7.1e-13 Score=106.42 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=14.4
Q ss_pred CCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCC
Q 036656 124 RLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELE 160 (367)
Q Consensus 124 ~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~ 160 (367)
+|++|++++|.+++..|..|.++++|++|++++|.++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 3444444444443333333333334444444333333
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=1e-12 Score=105.80 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=46.5
Q ss_pred EEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCC
Q 036656 79 ALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNE 158 (367)
Q Consensus 79 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (367)
.++++++.+. .+|..+. +.|++|++++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3445555443 2333332 445555555555554444445555555555555555543222233444455555555444
Q ss_pred CCCCCCCcCCCCCCCcEEEcccccc
Q 036656 159 LEGKVPGKLGSLPKLRILVIHSNNL 183 (367)
Q Consensus 159 ~~~~~~~~l~~l~~L~~L~l~~n~~ 183 (367)
+++..+..+..+++|++|++++|.+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 4433333344444444444444443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.3e-12 Score=105.27 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=13.9
Q ss_pred CCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCC
Q 036656 124 RLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELE 160 (367)
Q Consensus 124 ~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~ 160 (367)
+|++|++++|.+++..|..|.++++|++|++++|.++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 70 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT 70 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC
Confidence 3333333333333333333333333333333333333
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=1.6e-14 Score=130.85 Aligned_cols=159 Identities=17% Similarity=0.182 Sum_probs=93.4
Q ss_pred CCCcEEEcccccccccCCCC----CC-CCCCCCEEEcccCcCcccCCccc-CCCCCCCEEEeecCcCccccCccc-----
Q 036656 171 PKLRILVIHSNNLSGEIPSS----FG-NLSSLQVLSASANQFVGQIPATL-SELKRMRYISFGGNKLSGEIPFSI----- 239 (367)
Q Consensus 171 ~~L~~L~l~~n~~~~~~~~~----l~-~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~l----- 239 (367)
+.|+.|++++|.++...... +. ..++|++|++++|.++......+ ..+++|+.|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46777777777765322111 22 22577777777777754322222 234567777777777754332222
Q ss_pred cCCCCCCEEECCCCcCccc----CChhhhcCCCCCCEEEeecCcCccc----cchhhhCCCCCCeEeccCccCcccC---
Q 036656 240 YNLSTLSDFHFPFNQLRGS----LPSDLGFTLPNLEVLNLGANQFTGP----IPASISNASNLMRLGIPMNGFRGKV--- 308 (367)
Q Consensus 240 ~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~--- 308 (367)
...++|++|++++|.+++. ++..+. ..++|++|++++|.+.+. ++..+...++|++|+|++|.+++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356677777777777532 222223 466777777777777643 2344556667777777777776422
Q ss_pred -CC-CCCCCCCCEEEccCCcCCCc
Q 036656 309 -PS-FGNLHKLQRVIISMNHLGNG 330 (367)
Q Consensus 309 -~~-~~~~~~L~~L~l~~n~l~~~ 330 (367)
.. +...++|+.|+|++|.++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 22 44556777777777777654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=3e-14 Score=128.95 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=16.9
Q ss_pred CCCCEEEeecCcCccc----cchhhhCCCCCCeEeccCccCc
Q 036656 268 PNLEVLNLGANQFTGP----IPASISNASNLMRLGIPMNGFR 305 (367)
Q Consensus 268 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 305 (367)
++|++|++++|.+++. ++..+...++|++|+|++|.++
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 4455555555444422 1222333445555555555544
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.28 E-value=3.2e-10 Score=103.68 Aligned_cols=263 Identities=15% Similarity=0.117 Sum_probs=143.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCC-------------------
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTF------------------- 135 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l------------------- 135 (367)
.+++++.++. +++..-...|.++++|+.+++..+ ++.....+|.+++.|+.+.+..+--
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 4677777764 355445556777888888888654 4333344566666666655433210
Q ss_pred --CCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcC------
Q 036656 136 --GGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF------ 207 (367)
Q Consensus 136 --~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~------ 207 (367)
.......|.++.+|+.+.+..+. .......|..+.+|+.+.+..+ +.......+..+..|+.+.+..+..
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~ 226 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFA 226 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTT
T ss_pred cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhh
Confidence 00112335556666666665432 2233344556666666666543 2212233444444444444332211
Q ss_pred ---------------cccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCE
Q 036656 208 ---------------VGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEV 272 (367)
Q Consensus 208 ---------------~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 272 (367)
+......+..+..++.+.+..+... .....+..+..++.+..... .++...+..+.+|+.
T Consensus 227 ~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~ 301 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTE 301 (394)
T ss_dssp TTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCE
T ss_pred cccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce----eeccccccccccccc
Confidence 1111122333444444444443222 22334444555555544432 233333446788888
Q ss_pred EEeecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEe
Q 036656 273 LNLGANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQ 351 (367)
Q Consensus 273 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 351 (367)
+.+..+ ++..-...+.++.+|+.+++..+ ++..... |.++.+|+.+++..+ ++.. -..+|.+|++|+.++
T Consensus 302 i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I------~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 302 VKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI------GANAFQGCINLKKVE 372 (394)
T ss_dssp EEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE------CTTTBTTCTTCCEEE
T ss_pred cccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe------hHHHhhCCCCCCEEE
Confidence 888655 44344556778889999998643 5544444 888999999998766 5543 235678899999998
Q ss_pred CcCC
Q 036656 352 ININ 355 (367)
Q Consensus 352 l~~n 355 (367)
+..+
T Consensus 373 lp~~ 376 (394)
T 4fs7_A 373 LPKR 376 (394)
T ss_dssp EEGG
T ss_pred ECCC
Confidence 8765
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=6.9e-11 Score=106.18 Aligned_cols=108 Identities=25% Similarity=0.269 Sum_probs=89.0
Q ss_pred CCCccceEecCCCCcEEEEEcCCC-CcccccCccccCCCCCcEEEccC-CCCCCCcchhhcCCCCCcEEEccCCCCCCCc
Q 036656 62 FCQWKGVTCSPRHQRVTALLLPSL-LLQGSLSPHIGNLSFLRVLSLKN-NSFRNEIPRAIGYLFRLRILRLDNNTFGGQI 139 (367)
Q Consensus 62 ~c~~~~~~c~~~~~~v~~l~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 139 (367)
.|.|..+.|. ++ .+++ +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..
T Consensus 7 ~C~~~~v~~~------------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 7 PHGSSGLRCT------------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSSSSCEECC------------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred cccCCEEEcC------------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence 3777666664 33 4553 666 88999999999996 9998777788999999999999999999888
Q ss_pred CccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEccccccc
Q 036656 140 PDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHSNNLS 184 (367)
Q Consensus 140 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 184 (367)
|..|.++++|++|+|++|.+++..+..+..++ |++|++.+|.+.
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 88899999999999999999966555666555 999999999875
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=6.1e-11 Score=106.52 Aligned_cols=104 Identities=19% Similarity=0.132 Sum_probs=86.1
Q ss_pred EEEccCC-CCCCCcchhhcCCCCCcEEEccC-CCCCCCcCccccCCCCCCEEEeeCCCCCCCCCCcCCCCCCCcEEEccc
Q 036656 103 VLSLKNN-SFRNEIPRAIGYLFRLRILRLDN-NTFGGQIPDNISHCIKLESLRLGFNELEGKVPGKLGSLPKLRILVIHS 180 (367)
Q Consensus 103 ~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 180 (367)
.++++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688887 787 5788 88999999999996 999866667899999999999999999988888889999999999999
Q ss_pred ccccccCCCCCCCCCCCCEEEcccCcCcc
Q 036656 181 NNLSGEIPSSFGNLSSLQVLSASANQFVG 209 (367)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (367)
|.+++..+..+..++ |++|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999855444555444 9999999988863
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.15 E-value=1.7e-11 Score=110.08 Aligned_cols=85 Identities=9% Similarity=0.131 Sum_probs=58.2
Q ss_pred CCCCCCEEEeecCcCccccCccc---cCCCCCCEEECCCCcCcccCChhhh---cCCCCCCEEEeecCcCccccchhhhC
Q 036656 217 ELKRMRYISFGGNKLSGEIPFSI---YNLSTLSDFHFPFNQLRGSLPSDLG---FTLPNLEVLNLGANQFTGPIPASISN 290 (367)
Q Consensus 217 ~~~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l~~ 290 (367)
.+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+..+..+. ..+++|++|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 47888888888888764332222 2467899999999888754333332 13688999999999888665555543
Q ss_pred -CCCCCeEeccCcc
Q 036656 291 -ASNLMRLGIPMNG 303 (367)
Q Consensus 291 -l~~L~~L~l~~n~ 303 (367)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 4668888776
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=9e-09 Score=94.00 Aligned_cols=262 Identities=13% Similarity=0.170 Sum_probs=125.2
Q ss_pred EEEEEcCCCCcccccCccccCCCCCcEEEccCCC---CCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEE
Q 036656 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNS---FRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLR 153 (367)
Q Consensus 77 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~ 153 (367)
++++.+... ++..-...|.++++|+.+.+..+. ++..-..+|..+..|+.+.+.++ ++..-...|.++.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 444444322 333333445566666666665432 33223345555555555555433 2212233455566666666
Q ss_pred eeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEeecCc---
Q 036656 154 LGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFGGNK--- 230 (367)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~--- 230 (367)
+..+ +.......+..+.+|+.+.+..+ +...-...+. ..+|+.+.+..+-. ......+..+.+++........
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceeccccccccc
Confidence 6432 22233344555666666665443 1211122222 23455554432211 1122223333333333222110
Q ss_pred ---------------------------------CccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeec
Q 036656 231 ---------------------------------LSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGA 277 (367)
Q Consensus 231 ---------------------------------~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 277 (367)
+...-...|.++..|+.+.+..+.. .+....+..+++|+.+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~ 297 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS 297 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc--eecCcccccccccccccCCC
Confidence 1111123455666677777665433 23333343566777777653
Q ss_pred CcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCC
Q 036656 278 NQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININ 355 (367)
Q Consensus 278 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 355 (367)
.++......+.++.+|+.+++..+ ++..... |.++.+|+.+.+..+ ++.. -..+|.+|.+|+.+++.++
T Consensus 298 -~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I------~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 298 -RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKI------PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp -TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBC------CGGGGTTCTTCCEEEESSC
T ss_pred -cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEE------hHhHhhCCCCCCEEEECCc
Confidence 344333445666777777777643 4433333 677777777777543 3333 2245667777777777665
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=9.6e-11 Score=105.19 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=57.8
Q ss_pred CCCCCCEEECCCCcCcccCChhhhc--CCCCCCEEEeecCcCccc----cchhhhCCCCCCeEeccCccCcccCCC-CCC
Q 036656 241 NLSTLSDFHFPFNQLRGSLPSDLGF--TLPNLEVLNLGANQFTGP----IPASISNASNLMRLGIPMNGFRGKVPS-FGN 313 (367)
Q Consensus 241 ~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~ 313 (367)
.+++|++|++.+|.+.+..+..+.. .+++|++|+++.|.+.+. ++..+..+++|+.|++++|.+++.... +..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 4788999999988887544444432 367899999999988754 333345678899999999988754322 222
Q ss_pred -CCCCCEEEccCCc
Q 036656 314 -LHKLQRVIISMNH 326 (367)
Q Consensus 314 -~~~L~~L~l~~n~ 326 (367)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3567888876
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.09 E-value=3.7e-09 Score=96.55 Aligned_cols=250 Identities=12% Similarity=0.081 Sum_probs=141.1
Q ss_pred ccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEeeCCCCCCC-------
Q 036656 90 SLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLGFNELEGK------- 162 (367)
Q Consensus 90 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~~~~~------- 162 (367)
....+|.++.+|+.+.+.. .++.....+|.++++|+.+++.++ ++..-...|.++.+|+.+.+..+ +...
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 3445688899999999974 466555678999999999999765 44344456777777777655432 1111
Q ss_pred ---------------CCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcCcccCCcccCCCCCCCEEEee
Q 036656 163 ---------------VPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQFVGQIPATLSELKRMRYISFG 227 (367)
Q Consensus 163 ---------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 227 (367)
....|..+++|+.+.+..+... .....+..+.+|+.+.+..+ ++......+..+..|+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 1233555666666666543321 33345556666666666544 332333444555555555444
Q ss_pred cCcCc---------------------cccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCccccch
Q 036656 228 GNKLS---------------------GEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFTGPIPA 286 (367)
Q Consensus 228 ~n~~~---------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 286 (367)
.+... ......+..+..++.+.+..+... +....+..+..++.+......+. ..
T Consensus 217 ~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~---~~ 291 (394)
T 4fs7_A 217 NSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVP---EK 291 (394)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEEC---TT
T ss_pred CCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce--eeccccccccccceeccCceeec---cc
Confidence 33211 001112233334444444333221 22222223444444444333221 22
Q ss_pred hhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcCCeee
Q 036656 287 SISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 287 ~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
.+..+.+|+.+.+..+ ++..... |..+.+|+.+++..+ ++.. -..+|.+|.+|+.+++..+ ++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I------~~~aF~~c~~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI------GKRSFRGCTSLSNINFPLS-LR 355 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE------CTTTTTTCTTCCEECCCTT-CC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE------hHHhccCCCCCCEEEECcc-cc
Confidence 3556778888888654 4433344 888999999999754 4443 2357788999999999876 44
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=2.6e-08 Score=90.89 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=156.2
Q ss_pred CcEEEEEcCCCC---cccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCE
Q 036656 75 QRVTALLLPSLL---LQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLES 151 (367)
Q Consensus 75 ~~v~~l~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~ 151 (367)
..++++.++.+. ++..-...|..+..|+.+.+..+ ++.....+|..+.+|+.+.+..+- .......|..+..|+.
T Consensus 87 ~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~ 164 (394)
T 4gt6_A 87 TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHT 164 (394)
T ss_dssp TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCE
T ss_pred ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceeccccccc
Confidence 356666665432 33333445666777777666543 333344566777788888876432 2233445666777777
Q ss_pred EEeeCCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEccc---------------------------
Q 036656 152 LRLGFNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASA--------------------------- 204 (367)
Q Consensus 152 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~--------------------------- 204 (367)
+.+..+ ++......|. ..+|+.+.+..+... .....+..+.+++......
T Consensus 165 i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T 4gt6_A 165 VTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQ 241 (394)
T ss_dssp EECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTT
T ss_pred ccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccccccc
Confidence 777543 3322223332 244666655433211 2223333444443332211
Q ss_pred ---------CcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEe
Q 036656 205 ---------NQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNL 275 (367)
Q Consensus 205 ---------n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 275 (367)
+.++......|..+..|+.+.+..+... .....+.+++.|+.+.+.. .++ .++...+..+.+|+.+++
T Consensus 242 ~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 242 REDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDI 318 (394)
T ss_dssp CCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEEC
T ss_pred cccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEe
Confidence 1122223346778889999998765443 4456788899999999974 454 567766667899999999
Q ss_pred ecCcCccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcC
Q 036656 276 GANQFTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQINI 354 (367)
Q Consensus 276 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 354 (367)
..+ ++..-...+.++.+|+.+.+..+ ++..... |.++++|+.+++.++.. ....+..+.+|+.+.+..
T Consensus 319 p~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~---------~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 319 PEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS---------QWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH---------HHHTCBCCCCC-------
T ss_pred CCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee---------ehhhhhccCCCCEEEeCC
Confidence 865 55345567889999999999754 5544344 99999999999998753 224677889999998887
Q ss_pred Cee
Q 036656 355 NNF 357 (367)
Q Consensus 355 n~l 357 (367)
+.+
T Consensus 388 ~~~ 390 (394)
T 4gt6_A 388 GSI 390 (394)
T ss_dssp ---
T ss_pred CCE
Confidence 754
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.85 E-value=7.3e-07 Score=80.80 Aligned_cols=260 Identities=14% Similarity=0.058 Sum_probs=122.9
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEee
Q 036656 76 RVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLG 155 (367)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~ 155 (367)
+++++.+.. +++......|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +...-...|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 456666643 344444556777888888888643 543444556665 5666666433 33122223333 367777665
Q ss_pred CCCCCCCCCCcCCCCCCCcEEEcccccccccCCCCCCCCCCCCEEEcccCcC----------------------------
Q 036656 156 FNELEGKVPGKLGSLPKLRILVIHSNNLSGEIPSSFGNLSSLQVLSASANQF---------------------------- 207 (367)
Q Consensus 156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~---------------------------- 207 (367)
.+ +.......|... +++.+.+..+ +.......+..+.+++.+.+..+..
T Consensus 122 ~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Cc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 43 121112222222 2333333221 1111122233333443333322110
Q ss_pred -------cccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcC
Q 036656 208 -------VGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQF 280 (367)
Q Consensus 208 -------~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 280 (367)
.......+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++ .+....+..+.+|+.+.+..+ +
T Consensus 199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-C
T ss_pred cccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-c
Confidence 0111122333445555555433 22223344555666666666554 33 333333435566666666543 3
Q ss_pred ccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCCcCCCchhhhhhhcCCCCCCEEeCcC
Q 036656 281 TGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGNGEKDDLEFVNSLVNASRLELLQINI 354 (367)
Q Consensus 281 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 354 (367)
.......+..+.+|+.+.+.++.++..... |.++.+|+.+++..+ ++.. -..+|.+|.+|+.+.+..
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I------~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI------QVYAFKNCKALSTISYPK 342 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE------CTTTTTTCTTCCCCCCCT
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE------HHHHhhCCCCCCEEEECC
Confidence 323333455666777777766666544444 666677777766543 3322 123555666666666544
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=5.3e-09 Score=84.82 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=46.4
Q ss_pred CCCCCEEEeecCcCccc----cchhhhCCCCCCeEeccCccCccc----CCC-CCCCCCCCEEEc--cCCcCCCcCCCch
Q 036656 267 LPNLEVLNLGANQFTGP----IPASISNASNLMRLGIPMNGFRGK----VPS-FGNLHKLQRVII--SMNHLGNGEKDDL 335 (367)
Q Consensus 267 ~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~-~~~~~~L~~L~l--~~n~l~~~~~~~~ 335 (367)
.++|++|++++|.+.+. +...+...++|++|+|++|.+.+. +.. +...++|++|+| ++|.++... ..
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g--~~ 141 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV--EM 141 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH--HH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH--HH
Confidence 34555555555555422 223334445566666666665542 112 445556666666 556665431 11
Q ss_pred hhhhhhcCCCCCCEEeCcCCeee
Q 036656 336 EFVNSLVNASRLELLQININNFG 358 (367)
Q Consensus 336 ~~~~~l~~~~~L~~L~l~~n~l~ 358 (367)
.+...+...++|++|+|++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 13344555666777777666653
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=7.3e-10 Score=94.55 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=16.5
Q ss_pred CCCCccceEecCCCCcEEEEEcCC
Q 036656 61 HFCQWKGVTCSPRHQRVTALLLPS 84 (367)
Q Consensus 61 ~~c~~~~~~c~~~~~~v~~l~l~~ 84 (367)
..|.|.|+.|...+.+|..+...+
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~ 99 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSS 99 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred HHHhcCcEEECCCCCEEEEEEecC
Confidence 458899999987655665554433
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.58 E-value=1.2e-05 Score=72.70 Aligned_cols=242 Identities=12% Similarity=0.079 Sum_probs=144.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEe
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRL 154 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l 154 (367)
.++++++++.+ ++..-...|.++ .|+.+.+..+ ++.....+|.. .+|+.+.+.++-.. .....|.+ .+|+.+.+
T Consensus 69 ~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~~~~-i~~~~F~~-~~l~~~~~ 142 (379)
T 4h09_A 69 YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGATTE-IGNYIFYN-SSVKRIVI 142 (379)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTTCCE-ECTTTTTT-CCCCEEEE
T ss_pred CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCcccc-cccccccc-ceeeeeec
Confidence 46777777643 444444455555 5666666533 33223334444 36777777554221 11222322 23444433
Q ss_pred eCCCCCCCCCCcCCCCCCCcEEEccccc-----------------------------------ccccCCCCCCCCCCCCE
Q 036656 155 GFNELEGKVPGKLGSLPKLRILVIHSNN-----------------------------------LSGEIPSSFGNLSSLQV 199 (367)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~-----------------------------------~~~~~~~~l~~l~~L~~ 199 (367)
..+ ++......+..+.+++...+..+. ........+..+.+|+.
T Consensus 143 ~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~ 221 (379)
T 4h09_A 143 PKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKK 221 (379)
T ss_dssp CTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSE
T ss_pred cce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccce
Confidence 321 221222233334444433332111 11122334455677888
Q ss_pred EEcccCcCcccCCcccCCCCCCCEEEeecCcCccccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCc
Q 036656 200 LSASANQFVGQIPATLSELKRMRYISFGGNKLSGEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQ 279 (367)
Q Consensus 200 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 279 (367)
+.+..+ +.......+..+..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +. .++...+..+.+|+.+.+.++.
T Consensus 222 i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 222 ITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSA 297 (379)
T ss_dssp EECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTT
T ss_pred eeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccc
Confidence 877544 33344566788899999999775 55455567888999999998764 44 4566566678999999999888
Q ss_pred CccccchhhhCCCCCCeEeccCccCcccCCC-CCCCCCCCEEEccCCcCCC
Q 036656 280 FTGPIPASISNASNLMRLGIPMNGFRGKVPS-FGNLHKLQRVIISMNHLGN 329 (367)
Q Consensus 280 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~ 329 (367)
++..-...+.++.+|+.+.|..+ ++..-.. |.++.+|+.+.+..+ ++.
T Consensus 298 i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 298 IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 87555677889999999999754 5544444 889999999998654 443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=1.8e-08 Score=81.67 Aligned_cols=116 Identities=11% Similarity=0.154 Sum_probs=71.0
Q ss_pred cccCCCCCCCEEEeecC-cCccc----cCccccCCCCCCEEECCCCcCcccC----ChhhhcCCCCCCEEEeecCcCccc
Q 036656 213 ATLSELKRMRYISFGGN-KLSGE----IPFSIYNLSTLSDFHFPFNQLRGSL----PSDLGFTLPNLEVLNLGANQFTGP 283 (367)
Q Consensus 213 ~~l~~~~~L~~L~l~~n-~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 283 (367)
..+...++|++|++++| .+... +...+...++|++|+|++|.+.+.. ...+. ..++|++|++++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHH
Confidence 34455566666666666 55432 2334455667777777777765322 22222 346777777777777643
Q ss_pred ----cchhhhCCCCCCeEec--cCccCcccC----CC-CCCCCCCCEEEccCCcCCC
Q 036656 284 ----IPASISNASNLMRLGI--PMNGFRGKV----PS-FGNLHKLQRVIISMNHLGN 329 (367)
Q Consensus 284 ----~~~~l~~l~~L~~L~l--~~n~~~~~~----~~-~~~~~~L~~L~l~~n~l~~ 329 (367)
+...+...++|++|+| ++|.++... .. +...++|++|++++|.+..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3445566677888888 677776532 22 4556778888888887653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=3e-07 Score=78.36 Aligned_cols=85 Identities=22% Similarity=0.301 Sum_probs=57.6
Q ss_pred CCCCCCEEEeecCcCcc--ccchhhhCCCCCCeEeccCccCccc--CCCCCCCCCCCEEEccCCcCCCcCCCchh-hhhh
Q 036656 266 TLPNLEVLNLGANQFTG--PIPASISNASNLMRLGIPMNGFRGK--VPSFGNLHKLQRVIISMNHLGNGEKDDLE-FVNS 340 (367)
Q Consensus 266 ~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~ 340 (367)
.+++|++|+|++|++++ .++..+..+++|+.|+|++|.+.+. +..+..+ +|++|+|++|++.+..|+.-. ....
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 46778888888887775 3445566778888888888888764 1113334 888889998888876543211 2245
Q ss_pred hcCCCCCCEEe
Q 036656 341 LVNASRLELLQ 351 (367)
Q Consensus 341 l~~~~~L~~L~ 351 (367)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67788888875
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=9e-07 Score=70.09 Aligned_cols=13 Identities=15% Similarity=0.260 Sum_probs=5.6
Q ss_pred CCCCCCEEEccCC
Q 036656 313 NLHKLQRVIISMN 325 (367)
Q Consensus 313 ~~~~L~~L~l~~n 325 (367)
.+++|+.|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3444444444443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=5.5e-07 Score=71.33 Aligned_cols=84 Identities=11% Similarity=0.040 Sum_probs=58.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCcEEEccCCC-CCCCcchhhcCC----CCCcEEEccCCC-CCCCcCccccCCCC
Q 036656 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLSLKNNS-FRNEIPRAIGYL----FRLRILRLDNNT-FGGQIPDNISHCIK 148 (367)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~L~l~~~~-l~~~~p~~~~~l~~ 148 (367)
.++++||++++.+++.....+..+++|++|+|++|. +++.-...+..+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888777766677788888888888874 776555556654 367788887774 55333334566777
Q ss_pred CCEEEeeCCC
Q 036656 149 LESLRLGFNE 158 (367)
Q Consensus 149 L~~L~l~~n~ 158 (367)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777765
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.85 E-value=8.9e-06 Score=65.64 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCCCCCEEECCCC-cCccc----CChhhhcCCCCCCEEEeecCcCccc----cchhhhCCCCCCeEeccCccCccc----
Q 036656 241 NLSTLSDFHFPFN-QLRGS----LPSDLGFTLPNLEVLNLGANQFTGP----IPASISNASNLMRLGIPMNGFRGK---- 307 (367)
Q Consensus 241 ~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~---- 307 (367)
+-+.|++|+|+++ .+.+. +...+. .-..|++|+|++|++.+. +...+..-..|++|+|++|.|.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3445555555553 44321 112222 345566666666666532 233444556677777777776642
Q ss_pred CCC-CCCCCCCCEEEccCCc---CCCcCCCchhhhhhhcCCCCCCEEeCcCCee
Q 036656 308 VPS-FGNLHKLQRVIISMNH---LGNGEKDDLEFVNSLVNASRLELLQININNF 357 (367)
Q Consensus 308 ~~~-~~~~~~L~~L~l~~n~---l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l 357 (367)
+.. +...+.|++|+|++|. +... ....+...+...+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~--g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQ--VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHH--HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHH--HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 222 5555667777776542 2221 1112445566677777777776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00013 Score=58.88 Aligned_cols=88 Identities=8% Similarity=0.108 Sum_probs=68.6
Q ss_pred CCCCCCEEEeecC-cCccc----cchhhhCCCCCCeEeccCccCcccCC----C-CCCCCCCCEEEccCCcCCCcCCCch
Q 036656 266 TLPNLEVLNLGAN-QFTGP----IPASISNASNLMRLGIPMNGFRGKVP----S-FGNLHKLQRVIISMNHLGNGEKDDL 335 (367)
Q Consensus 266 ~~~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~----~-~~~~~~L~~L~l~~n~l~~~~~~~~ 335 (367)
.-+.|++|+|++| ++... +...+..-..|+.|+|++|.+.+.-. . +..-+.|+.|+|+.|.|+.. +..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~--Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE--LLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH--HHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH--HHH
Confidence 4688999999986 77633 45566778899999999999986322 2 55678999999999999865 222
Q ss_pred hhhhhhcCCCCCCEEeCcCC
Q 036656 336 EFVNSLVNASRLELLQININ 355 (367)
Q Consensus 336 ~~~~~l~~~~~L~~L~l~~n 355 (367)
.+.+.+...+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 35567888889999999875
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.62 E-value=0.0027 Score=47.59 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=29.1
Q ss_pred EEECCCCcCc-ccCChhhhcCCCCCCEEEeecCcCccccchhhhCCCCCCeEeccCccC
Q 036656 247 DFHFPFNQLR-GSLPSDLGFTLPNLEVLNLGANQFTGPIPASISNASNLMRLGIPMNGF 304 (367)
Q Consensus 247 ~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 304 (367)
.++.+++.++ ..+|..+ .++|++|+|++|+++...+..+..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555553 2344332 34566666666666543344455556666666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0038 Score=46.78 Aligned_cols=57 Identities=26% Similarity=0.430 Sum_probs=42.1
Q ss_pred CEEEeecCcCc-cccCccccCCCCCCEEECCCCcCcccCChhhhcCCCCCCEEEeecCcCc
Q 036656 222 RYISFGGNKLS-GEIPFSIYNLSTLSDFHFPFNQLRGSLPSDLGFTLPNLEVLNLGANQFT 281 (367)
Q Consensus 222 ~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 281 (367)
..++.+++.++ ..+|..+ .++|++|+|++|+++ .++...+..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 36777777775 2445432 246889999999988 677776667889999999998875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.73 E-value=40 Score=23.17 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=17.0
Q ss_pred chhhcCCCCCcEEEccCCCCCCCcCccccCCCCCCEEEee
Q 036656 116 PRAIGYLFRLRILRLDNNTFGGQIPDNISHCIKLESLRLG 155 (367)
Q Consensus 116 ~~~l~~l~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~l~ 155 (367)
..+|.++..|+.+.+-.+ ++..-...|.++.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 334444555555544332 221223344455555555444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.14 E-value=71 Score=21.85 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=35.0
Q ss_pred cccccCccccCCCCCcEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 036656 87 LQGSLSPHIGNLSFLRVLSLKNNSFRNEIPRAIGYLFRLRILRLDNN 133 (367)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 133 (367)
++..-...|.++..|+.+.+..+ ++..-..+|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44444567888999999999865 44455678999999999999764
Done!