BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036657
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQ 60
P + + IE S ++++ S++YA+S WCL+ELV I+D +K V+P+FY V+P+ VR Q
Sbjct: 54 PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQ 113
Query: 61 RGTFEKAFVHHENNF-PDKVQKWRDVLTEASNFSG 94
G + F H + P+KV KWR LT + SG
Sbjct: 114 TGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMN-GQIVIPVFYQVDPSDVRK 59
P + AI+ S I + I S YA SKWCL EL +I+ ++ + +I++P+FY VDPSDVR
Sbjct: 81 PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140
Query: 60 QRGTFEKAFVHHENNFPDK-VQKWRDVLTEASNFSGY 95
Q G ++KAF H N F + +Q W+D L + + G+
Sbjct: 141 QTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGW 177
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 22 ASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGTFEKAFV 69
A+ + L ++I D + N Q V+P + P D + Q G FE + +
Sbjct: 527 AAPRGALGHWIRIKDGRIENYQCVVPTTWNGSPRDYKGQIGAFEASLM 574
>pdb|1Q1Z|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap
pdb|1Q20|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap And Pregnenolone
pdb|1Q22|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(sult2b1b) In The Presence Of Dhea And Pap
Length = 299
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 4 SNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGT 63
S + +S + I IF+K + SSK K++ + +V+ +++ + K GT
Sbjct: 105 SPRLMSSHLPIQIFTKAFFSSK------AKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGT 158
Query: 64 ---FEKAFVHHENNFP---DKVQKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEVV 117
F + F+ E F D ++ W + NF E +Q+ L+ S E +
Sbjct: 159 PDQFLRDFLKGEVQFGSWFDHIKGWLR-MKGKDNFLFITYEELQQD------LQGSVERI 211
Query: 118 CYADGNPLALEVLGSSLYHKS 138
C G PL E LGS + H +
Sbjct: 212 CGFLGRPLGKEALGSVVAHST 232
>pdb|1Q1Q|A Chain A, Crystal Structure Of Human Pregnenolone Sulfotransferase
(Sult2b1a) In The Presence Of Pap
Length = 350
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 4 SNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGT 63
S + +S + I IF+K + SSK K++ + +V+ +++ + K GT
Sbjct: 103 SPRLMSSHLPIQIFTKAFFSSK------AKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGT 156
Query: 64 ---FEKAFVHHENNFP---DKVQKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEVV 117
F + F+ E F D ++ W + NF E +Q+ L+ S E +
Sbjct: 157 PDQFLRDFLKGEVQFGSWFDHIKGWLR-MKGKDNFLFITYEELQQD------LQGSVERI 209
Query: 118 CYADGNPLALEVLGSSLYHKS 138
C G PL E LGS + H +
Sbjct: 210 CGFLGRPLGKEALGSVVAHST 230
>pdb|1D5Y|A Chain A, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
pdb|1D5Y|B Chain B, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
pdb|1D5Y|C Chain C, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
pdb|1D5Y|D Chain D, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
Length = 292
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 288 AFANMSNLRLLKFYMPKHN-----DIPIMSSKLHLDQGLEYLPE---ELRYLHWHEY 336
AF LRL +F MP+H D P++ LE + + E+RY WH++
Sbjct: 109 AFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDF 165
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 147 NNLKLISEPSIYKVLKISYDELNSEVKEIF----------IDIACFFKGEDIDFMT---- 192
N+L + E SI VL +++ + E+ I++ K E ++ T
Sbjct: 213 NSLNWMLENSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRI 272
Query: 193 --RIHDDPMSIHDGLNILVSKSLITISDENELQM 224
R+ + + DG N L+ + L+T+ DE EL++
Sbjct: 273 VDRVQEQFKAFMDGFNELIPEDLVTVFDERELEL 306
>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From
Pyrococcus Horikoshii Ot3
Length = 403
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 232 GQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAFAN 291
G T +R+ K GKR + ND+ + D + +FL+ I + +A
Sbjct: 74 GFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVV----EAPTY 129
Query: 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML 341
++ L+ FY P++ IP+ + +E L E+L+ L +K++
Sbjct: 130 LAALQAFNFYEPQYIQIPLDDEGMK----VEILEEKLKELKSQGKKVKVV 175
>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOV|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOW|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3AOW|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3ATH|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3ATH|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3AV7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
pdb|3AV7|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
Length = 448
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 232 GQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAFAN 291
G T +R+ K GKR + ND+ + D + +FL+ I + +A
Sbjct: 119 GFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVV----EAPTY 174
Query: 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML 341
++ L+ FY P++ IP+ + +E L E+L+ L +K++
Sbjct: 175 LAALQAFNFYEPQYIQIPLDDEGMK----VEILEEKLKELKSQGKKVKVV 220
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 301 YMPK--HNDIPIMSSKLHLDQGLEYLPEELRY 330
YMPK H+ +P+++SK +D+ +E++P + Y
Sbjct: 332 YMPKSVHSSVPLLNSKDPIDRIIEFVPTKTPY 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,415,312
Number of Sequences: 62578
Number of extensions: 606779
Number of successful extensions: 1579
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1571
Number of HSP's gapped (non-prelim): 30
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)