Query 036657
Match_columns 481
No_of_seqs 576 out of 3462
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.1E-89 2.3E-94 778.9 40.7 476 1-480 57-743 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 4.1E-41 8.9E-46 365.2 14.8 363 107-478 339-786 (889)
3 PLN03194 putative disease resi 100.0 2.7E-30 5.8E-35 225.4 8.9 85 1-99 72-157 (187)
4 PLN00113 leucine-rich repeat r 99.7 2.7E-17 5.9E-22 186.6 13.8 207 242-459 42-254 (968)
5 PLN03210 Resistant to P. syrin 99.7 5.2E-17 1.1E-21 185.7 14.6 88 394-481 778-865 (1153)
6 PLN00113 leucine-rich repeat r 99.6 9.7E-16 2.1E-20 174.0 11.6 157 286-451 157-318 (968)
7 KOG0444 Cytoskeletal regulator 99.6 2.8E-17 6.1E-22 165.0 -2.4 205 262-480 73-286 (1255)
8 KOG0617 Ras suppressor protein 99.6 3.8E-17 8.3E-22 139.8 -3.8 161 290-464 30-195 (264)
9 PF01582 TIR: TIR domain; Int 99.6 4.2E-16 9.1E-21 135.3 2.5 86 2-87 47-140 (141)
10 KOG0444 Cytoskeletal regulator 99.6 7.3E-17 1.6E-21 162.1 -4.8 136 341-480 214-357 (1255)
11 KOG0617 Ras suppressor protein 99.5 1.7E-16 3.7E-21 135.8 -5.3 150 327-479 34-190 (264)
12 PF00931 NB-ARC: NB-ARC domain 99.4 2E-14 4.3E-19 140.2 2.0 92 107-198 179-279 (287)
13 PRK15370 E3 ubiquitin-protein 99.4 2.7E-13 5.8E-18 146.5 9.4 165 293-479 220-405 (754)
14 KOG4194 Membrane glycoprotein 99.4 9.8E-14 2.1E-18 139.0 4.4 199 267-480 125-335 (873)
15 KOG0472 Leucine-rich repeat pr 99.4 5.1E-15 1.1E-19 142.2 -7.0 160 315-480 127-293 (565)
16 PRK15370 E3 ubiquitin-protein 99.4 1.7E-12 3.7E-17 140.3 9.1 166 293-480 199-385 (754)
17 PRK15387 E3 ubiquitin-protein 99.4 3.5E-12 7.6E-17 137.3 11.4 58 419-480 383-440 (788)
18 KOG0472 Leucine-rich repeat pr 99.3 1.4E-14 3E-19 139.2 -7.4 189 274-477 119-312 (565)
19 KOG4194 Membrane glycoprotein 99.3 8.8E-13 1.9E-17 132.3 4.8 188 277-477 205-431 (873)
20 smart00255 TIR Toll - interleu 99.3 1.2E-11 2.5E-16 107.1 9.7 90 2-91 47-139 (140)
21 PRK15387 E3 ubiquitin-protein 99.3 1.9E-11 4E-16 131.8 12.0 162 294-479 223-419 (788)
22 KOG0618 Serine/threonine phosp 99.3 5.2E-13 1.1E-17 140.4 -0.8 103 367-473 379-487 (1081)
23 KOG0532 Leucine-rich repeat (L 99.1 4E-12 8.7E-17 127.4 -4.2 159 286-459 91-251 (722)
24 KOG0618 Serine/threonine phosp 99.0 3E-11 6.5E-16 127.4 -1.3 154 323-480 238-425 (1081)
25 KOG4658 Apoptotic ATPase [Sign 99.0 2.5E-10 5.4E-15 125.5 2.8 151 265-427 521-677 (889)
26 KOG4237 Extracellular matrix p 98.9 6E-11 1.3E-15 114.3 -3.9 199 268-479 68-339 (498)
27 cd00116 LRR_RI Leucine-rich re 98.9 6.4E-10 1.4E-14 109.9 3.2 180 286-476 74-292 (319)
28 KOG0532 Leucine-rich repeat (L 98.9 5.6E-11 1.2E-15 119.3 -4.5 173 293-480 75-252 (722)
29 PF14580 LRR_9: Leucine-rich r 98.9 1.5E-09 3.2E-14 96.7 4.6 98 327-427 20-122 (175)
30 COG4886 Leucine-rich repeat (L 98.9 1.7E-09 3.7E-14 110.5 5.1 180 287-479 110-294 (394)
31 KOG1259 Nischarin, modulator o 98.8 6.5E-10 1.4E-14 103.7 0.7 128 347-478 283-415 (490)
32 cd00116 LRR_RI Leucine-rich re 98.8 1.9E-09 4.1E-14 106.5 2.3 184 286-475 44-263 (319)
33 PF14580 LRR_9: Leucine-rich r 98.8 4.2E-09 9.1E-14 93.8 3.7 126 290-428 16-150 (175)
34 KOG3207 Beta-tubulin folding c 98.7 2.1E-09 4.5E-14 105.1 0.1 203 260-475 114-339 (505)
35 PRK15386 type III secretion pr 98.7 4.2E-08 9.1E-13 97.8 7.7 133 322-472 49-187 (426)
36 KOG1259 Nischarin, modulator o 98.6 2.9E-09 6.4E-14 99.4 -1.7 128 327-460 285-417 (490)
37 COG4886 Leucine-rich repeat (L 98.6 2.8E-08 6E-13 101.5 4.6 151 290-453 136-289 (394)
38 KOG4237 Extracellular matrix p 98.5 7E-09 1.5E-13 100.3 -2.4 82 322-403 63-149 (498)
39 KOG3207 Beta-tubulin folding c 98.5 9.9E-09 2.1E-13 100.5 -1.5 177 290-479 118-318 (505)
40 PLN03150 hypothetical protein; 98.4 6.4E-07 1.4E-11 96.5 8.4 110 349-458 419-532 (623)
41 PRK15386 type III secretion pr 98.4 8.1E-07 1.7E-11 88.7 8.2 134 289-451 48-187 (426)
42 PLN03150 hypothetical protein; 98.3 1E-06 2.2E-11 95.0 7.3 109 327-435 419-532 (623)
43 PF13855 LRR_8: Leucine rich r 98.3 7.2E-07 1.6E-11 65.1 4.2 55 327-381 2-59 (61)
44 PF13855 LRR_8: Leucine rich r 98.3 8.2E-07 1.8E-11 64.8 4.2 57 348-405 1-60 (61)
45 PF12799 LRR_4: Leucine Rich r 98.0 7.4E-06 1.6E-10 55.3 3.3 42 348-390 1-42 (44)
46 KOG1859 Leucine-rich repeat pr 97.9 3E-07 6.4E-12 95.4 -5.7 125 327-458 165-295 (1096)
47 KOG0531 Protein phosphatase 1, 97.9 1E-06 2.2E-11 90.5 -2.2 172 289-476 91-269 (414)
48 KOG0531 Protein phosphatase 1, 97.9 2E-06 4.4E-11 88.4 -0.3 55 327-381 141-196 (414)
49 PF13676 TIR_2: TIR domain; PD 97.8 1.1E-05 2.4E-10 65.5 2.1 45 2-50 42-86 (102)
50 KOG1859 Leucine-rich repeat pr 97.8 4.2E-07 9.1E-12 94.3 -8.1 175 287-475 103-292 (1096)
51 KOG3665 ZYG-1-like serine/thre 97.7 1.3E-05 2.8E-10 86.6 1.5 59 368-427 170-229 (699)
52 PF12799 LRR_4: Leucine Rich r 97.4 7.8E-05 1.7E-09 50.2 1.9 38 327-364 2-40 (44)
53 KOG4579 Leucine-rich repeat (L 97.4 4.3E-06 9.3E-11 69.9 -5.6 85 327-413 54-141 (177)
54 KOG1644 U2-associated snRNP A' 97.3 0.00043 9.2E-09 61.9 5.6 105 321-427 37-149 (233)
55 KOG3665 ZYG-1-like serine/thre 97.3 9.6E-05 2.1E-09 80.0 1.4 111 284-403 139-259 (699)
56 KOG2120 SCF ubiquitin ligase, 97.2 1.4E-05 3.1E-10 75.1 -4.9 155 287-452 204-374 (419)
57 KOG1644 U2-associated snRNP A' 97.2 0.0011 2.3E-08 59.4 6.5 119 328-450 21-149 (233)
58 KOG1909 Ran GTPase-activating 97.1 0.00012 2.5E-09 70.6 0.0 181 283-475 82-311 (382)
59 KOG4579 Leucine-rich repeat (L 97.0 3.3E-05 7.1E-10 64.7 -4.2 108 327-437 28-141 (177)
60 KOG2120 SCF ubiquitin ligase, 96.5 7.6E-05 1.7E-09 70.4 -5.9 147 326-472 185-348 (419)
61 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.5E-08 60.6 2.5 101 327-428 44-153 (260)
62 KOG1909 Ran GTPase-activating 96.2 0.001 2.2E-08 64.3 -0.7 81 347-428 212-308 (382)
63 PF13306 LRR_5: Leucine rich r 95.9 0.044 9.5E-07 46.0 8.1 102 285-402 4-111 (129)
64 KOG2982 Uncharacterized conser 95.6 0.0036 7.7E-08 59.4 0.2 55 327-381 72-131 (418)
65 KOG2982 Uncharacterized conser 95.5 0.0086 1.9E-07 56.9 2.3 62 286-359 90-157 (418)
66 KOG2739 Leucine-rich acidic nu 95.3 0.0092 2E-07 55.7 1.9 121 327-451 19-153 (260)
67 KOG2123 Uncharacterized conser 95.2 0.001 2.2E-08 62.4 -4.6 98 292-400 18-123 (388)
68 PF00560 LRR_1: Leucine Rich R 95.1 0.012 2.5E-07 33.1 1.3 19 350-368 2-20 (22)
69 KOG2123 Uncharacterized conser 94.7 0.00099 2.1E-08 62.5 -6.1 80 287-377 35-123 (388)
70 PF00560 LRR_1: Leucine Rich R 94.5 0.015 3.2E-07 32.7 0.7 19 463-481 1-19 (22)
71 PRK04841 transcriptional regul 94.2 0.31 6.7E-06 55.4 11.2 124 112-238 207-334 (903)
72 PF13504 LRR_7: Leucine rich r 93.6 0.037 8E-07 28.9 1.0 16 463-478 2-17 (17)
73 PF13306 LRR_5: Leucine rich r 93.4 0.28 6.1E-06 40.9 6.8 95 347-449 11-111 (129)
74 PF07725 LRR_3: Leucine Rich R 93.3 0.062 1.3E-06 29.2 1.6 20 349-368 1-20 (20)
75 KOG0473 Leucine-rich repeat pr 93.3 0.0039 8.4E-08 57.1 -4.9 91 287-387 36-127 (326)
76 PF13504 LRR_7: Leucine rich r 92.4 0.076 1.7E-06 27.7 1.2 8 374-381 4-11 (17)
77 KOG3864 Uncharacterized conser 90.5 0.067 1.5E-06 48.2 -0.4 82 348-429 101-187 (221)
78 smart00369 LRR_TYP Leucine-ric 88.2 0.25 5.4E-06 28.7 1.0 18 462-479 2-19 (26)
79 smart00370 LRR Leucine-rich re 88.2 0.25 5.4E-06 28.7 1.0 18 462-479 2-19 (26)
80 COG5238 RNA1 Ran GTPase-activa 86.2 0.48 1.1E-05 44.8 2.2 185 284-477 83-318 (388)
81 KOG3864 Uncharacterized conser 86.0 0.091 2E-06 47.4 -2.5 83 371-454 101-189 (221)
82 smart00370 LRR Leucine-rich re 85.7 0.52 1.1E-05 27.3 1.5 19 348-366 2-20 (26)
83 smart00369 LRR_TYP Leucine-ric 85.7 0.52 1.1E-05 27.3 1.5 19 348-366 2-20 (26)
84 COG5238 RNA1 Ran GTPase-activa 85.2 1.7 3.6E-05 41.3 5.1 145 327-476 31-228 (388)
85 KOG1947 Leucine rich repeat pr 85.1 0.3 6.5E-06 50.8 0.4 105 327-431 189-308 (482)
86 KOG4341 F-box protein containi 83.4 0.074 1.6E-06 53.0 -4.7 108 348-455 138-256 (483)
87 KOG4341 F-box protein containi 82.5 0.67 1.4E-05 46.4 1.5 109 347-455 293-415 (483)
88 KOG1947 Leucine rich repeat pr 82.2 0.44 9.5E-06 49.6 0.1 108 347-454 187-308 (482)
89 PF08937 DUF1863: MTH538 TIR-l 77.0 3.1 6.7E-05 35.1 3.7 44 2-49 63-106 (130)
90 KOG0473 Leucine-rich repeat pr 77.0 0.072 1.6E-06 49.0 -6.5 76 327-403 43-120 (326)
91 smart00364 LRR_BAC Leucine-ric 75.5 1.7 3.7E-05 25.4 1.1 18 462-479 2-19 (26)
92 smart00367 LRR_CC Leucine-rich 66.3 4.1 8.9E-05 23.5 1.4 15 441-455 2-16 (26)
93 TIGR00635 ruvB Holliday juncti 66.1 27 0.00059 34.0 8.1 105 111-222 182-294 (305)
94 KOG2792 Putative cytochrome C 64.9 9.1 0.0002 36.0 4.1 29 27-55 155-187 (280)
95 PRK00080 ruvB Holliday junctio 64.3 7.6 0.00016 38.5 3.8 105 111-221 203-314 (328)
96 smart00365 LRR_SD22 Leucine-ri 61.4 6.1 0.00013 23.1 1.5 14 348-361 2-15 (26)
97 KOG3678 SARM protein (with ste 59.5 14 0.00029 37.8 4.5 46 2-51 657-710 (832)
98 PF13516 LRR_6: Leucine Rich r 52.7 8.7 0.00019 21.5 1.2 14 348-361 2-15 (24)
99 KOG3763 mRNA export factor TAP 36.9 19 0.00041 37.8 1.5 59 349-408 219-284 (585)
100 smart00368 LRR_RI Leucine rich 36.5 24 0.00053 20.7 1.4 13 349-361 3-15 (28)
101 KOG2911 Uncharacterized conser 35.4 21 0.00045 36.1 1.5 62 74-144 37-102 (439)
102 TIGR03015 pepcterm_ATPase puta 33.3 4.1E+02 0.0089 24.9 12.6 115 9-134 121-242 (269)
103 cd03028 GRX_PICOT_like Glutare 29.9 26 0.00056 27.2 1.0 31 5-37 3-35 (90)
104 cd04142 RRP22 RRP22 subfamily. 29.4 95 0.0021 28.0 4.8 108 4-136 75-193 (198)
105 PF05725 FNIP: FNIP Repeat; I 27.5 85 0.0018 20.6 3.0 12 323-334 9-20 (44)
106 cd01857 HSR1_MMR1 HSR1/MMR1. 26.6 1.5E+02 0.0032 25.0 5.2 51 2-54 4-54 (141)
107 PHA00407 phage lambda Rz1-like 25.4 41 0.00088 25.1 1.2 23 77-99 26-53 (84)
108 PF11214 Med2: Mediator comple 25.2 47 0.001 26.7 1.7 18 21-38 68-85 (105)
109 COG3899 Predicted ATPase [Gene 25.0 1.5E+02 0.0033 33.6 6.3 125 108-233 238-383 (849)
110 COG5566 Uncharacterized conser 24.7 1.1E+02 0.0024 25.4 3.8 62 58-135 3-72 (137)
111 PF13730 HTH_36: Helix-turn-he 23.3 1E+02 0.0022 21.1 3.0 48 167-214 2-55 (55)
112 KOG1136 Predicted cleavage and 22.4 1.1E+02 0.0023 30.1 3.8 43 7-49 192-240 (501)
113 PF11074 DUF2779: Domain of un 22.1 68 0.0015 27.1 2.2 32 2-35 63-94 (130)
114 KOG2865 NADH:ubiquinone oxidor 22.0 33 0.00072 33.1 0.3 76 38-121 82-165 (391)
115 PF13271 DUF4062: Domain of un 21.3 90 0.002 23.8 2.6 24 2-25 45-68 (83)
116 PF14258 DUF4350: Domain of un 20.7 2.2E+02 0.0049 20.5 4.6 41 4-46 28-68 (70)
117 cd02986 DLP Dim1 family, Dim1- 20.7 1.3E+02 0.0028 24.8 3.4 53 2-61 4-61 (114)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-89 Score=778.88 Aligned_cols=476 Identities=43% Similarity=0.727 Sum_probs=445.7
Q ss_pred ChHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCc-hhh
Q 036657 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFP-DKV 79 (481)
Q Consensus 1 ~~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~-~~v 79 (481)
|+|++||++|||||||||+|||+|+||||||++||||++..|++|+||||+|||||||+|+|.||+||.+|+.+.. +++
T Consensus 57 ~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~ 136 (1153)
T PLN03210 57 PELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEK 136 (1153)
T ss_pred HHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999998766 899
Q ss_pred hhHHHHHHHhhccCCCCCCCCh----------------------------------------------------------
Q 036657 80 QKWRDVLTEASNFSGYDSTESR---------------------------------------------------------- 101 (481)
Q Consensus 80 ~~w~~al~~~~~~~g~~~~~~~---------------------------------------------------------- 101 (481)
++||+||++||+++||++.++.
T Consensus 137 ~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~g 216 (1153)
T PLN03210 137 IQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSS 216 (1153)
T ss_pred HHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCC
Confidence 9999999999999999987653
Q ss_pred -------------------------------------h--------------h--------------------------h
Q 036657 102 -------------------------------------Q--------------N--------------------------N 104 (481)
Q Consensus 102 -------------------------------------q--------------~--------------------------~ 104 (481)
+ + +
T Consensus 217 GiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~k 296 (1153)
T PLN03210 217 GIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHR 296 (1153)
T ss_pred CCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCC
Confidence 0 0 0
Q ss_pred C-------------------------------------------------------------------------ChhHHH
Q 036657 105 R-------------------------------------------------------------------------SRDLLE 111 (481)
Q Consensus 105 r-------------------------------------------------------------------------S~~~~~ 111 (481)
| .+++++
T Consensus 297 rvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~ 376 (1153)
T PLN03210 297 KVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFME 376 (1153)
T ss_pred eEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 0 047899
Q ss_pred HHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCCchhhHHHHHhccccCch-hhHHHhhhhccCCCCCCHHH
Q 036657 112 LSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNS-EVKEIFIDIACFFKGEDIDF 190 (481)
Q Consensus 112 i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~~~~i~~~L~lSYd~L~~-~~K~cFl~~a~Fp~~~~~~~ 190 (481)
++++||++|+|+||||+++|+.|++++..+|++++++|++.++.+|.++|++|||+|++ .+|.||+||||||.+++++.
T Consensus 377 l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~ 456 (1153)
T PLN03210 377 LASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND 456 (1153)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH
Confidence 99999999999999999999999999999999999999998889999999999999987 58999999999999999999
Q ss_pred HHHHhcCC-CcccccHHHHhhCcceeecCCCceehhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhhcCCCCcce
Q 036657 191 MTRIHDDP-MSIHDGLNILVSKSLITISDENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKV 269 (481)
Q Consensus 191 l~~~~~~~-~~~~~~~~~L~~r~li~~~~~~~~~mHdll~d~~~~i~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~~v 269 (481)
+..|++++ +.++.+++.|++||||++. .++++|||++|+||++|+++++ .+|++|+|+|.++++++++..++|++++
T Consensus 457 v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v 534 (1153)
T PLN03210 457 IKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKV 534 (1153)
T ss_pred HHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCccccee
Confidence 99999988 8899999999999999998 7899999999999999999998 7899999999999999999999999999
Q ss_pred eeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCC
Q 036657 270 EGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPEN 349 (481)
Q Consensus 270 ~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~ 349 (481)
++|+++.+...+..+...+|.+|++|++|.++.+... .......++|+++..+|.+||+|+|.+|+++.+|..|.+.+
T Consensus 535 ~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~--~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~ 612 (1153)
T PLN03210 535 LGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWD--QKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPEN 612 (1153)
T ss_pred eEEEeccCccceeeecHHHHhcCccccEEEEeccccc--ccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccC
Confidence 9999999988888899999999999999999866421 11223567899999999899999999999999999999999
Q ss_pred ceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCC
Q 036657 350 LIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCE 429 (481)
Q Consensus 350 L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~ 429 (481)
|++|+|++|+++.+|.++..+++|+.|+|++|..++.+|+++.+++|++|++++|..+..+|.+++++++|+.|++++|+
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCCC
Q 036657 430 SLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 430 ~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~s 480 (481)
.++.+|..+++++|+.|++++|+.++.+|...++|++|++++|.++.+|.+
T Consensus 693 ~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 693 NLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc
Confidence 999999988999999999999999999999999999999999999999975
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-41 Score=365.24 Aligned_cols=363 Identities=25% Similarity=0.277 Sum_probs=244.6
Q ss_pred hhHHHHHHHHHhhhCCCchhHHHHhhhhCCC-ChhHHHHHHHHHhcC-----C--chhhHHHHHhccccCchhhHHHhhh
Q 036657 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHK-SKQQWKDKLNNLKLI-----S--EPSIYKVLKISYDELNSEVKEIFID 178 (481)
Q Consensus 107 ~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k-~~~~W~~~l~~l~~~-----~--~~~i~~~L~lSYd~L~~~~K~cFl~ 178 (481)
+.++++|++||++|+|||||++|+|+.|+.| +.++|+.+.+.++.. + .+.|+++|++|||.||+++|.||||
T Consensus 339 ~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLy 418 (889)
T KOG4658|consen 339 PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLY 418 (889)
T ss_pred ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHh
Confidence 6689999999999999999999999999999 889999999998765 2 5689999999999999889999999
Q ss_pred hccCCCCCCHH--HHHHHhcCC-C------------cccccHHHHhhCcceeecCC----CceehhHHHHHHHHHHhh--
Q 036657 179 IACFFKGEDID--FMTRIHDDP-M------------SIHDGLNILVSKSLITISDE----NELQMHDLLQEMGQTIVR-- 237 (481)
Q Consensus 179 ~a~Fp~~~~~~--~l~~~~~~~-~------------~~~~~~~~L~~r~li~~~~~----~~~~mHdll~d~~~~i~~-- 237 (481)
||+||+||+++ +++..|+++ | .++.++.+|+.++|++..++ .+|+|||++||||.+++.
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccc
Confidence 99999998765 488888776 5 35667999999999998742 579999999999999999
Q ss_pred ---cccc-CCC-------------CCcccccccchhhhhhhcCCCCcceeeeeecCCcccccccChHhhccCCCCcEEEE
Q 036657 238 ---QESA-KEP-------------GKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKF 300 (481)
Q Consensus 238 ---~e~~-~~~-------------~~~~rl~~~~~~~~~l~~~~~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l 300 (481)
+|.. ... ...+|+.................+++++.+..+......++.+.|..|+.||+|++
T Consensus 499 ~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 499 GKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDL 578 (889)
T ss_pred cccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEEC
Confidence 3321 011 11122211111111112222233455555543321134456677888888888888
Q ss_pred eCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcc-cccccccCCCCCcEEec
Q 036657 301 YMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVE-QIWKGEKKAFKLKYIDI 378 (481)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L 378 (481)
++|. ....+|..++.|. +||||+++++.++.+|..+. ++.|.+|++..+... .+|.....|.+||+|.+
T Consensus 579 s~~~--------~l~~LP~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 579 SGNS--------SLSKLPSSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred CCCC--------ccCcCChHHhhhh-hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 8766 3677888888888 88888888888888888887 888888888877543 33444555888888888
Q ss_pred cCCC-CCc--ccCCCCCCCCCCEEeccCC-------------------------CCCccccccccCCCCCCEEeeeCCCC
Q 036657 379 SHSQ-QLV--RMLDLSETPNLERTNLLNC-------------------------RDLACVRSSIENFNNLSMLCFKGCES 430 (481)
Q Consensus 379 s~~~-~l~--~lp~~~~l~~L~~L~L~~c-------------------------~~l~~lp~~i~~L~~L~~L~l~~c~~ 430 (481)
.... ... .+-++..+.+|+.+....+ ......+.+++.+.+|+.|.+.+|..
T Consensus 650 ~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 650 PRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred eccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence 7653 000 0111333334443333221 12233455677778888888887765
Q ss_pred CccCCCC----C--C-CCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccCC
Q 036657 431 LRSFPRG----I--H-FVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 431 l~~lp~~----~--~-l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP 478 (481)
....... . . ++++..+.+.+|..++.+-. +.++|+.|++.+++..+.|
T Consensus 730 ~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 730 SEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred chhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 4321110 0 1 23444445555554444331 4566777777755554433
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=99.96 E-value=2.7e-30 Score=225.39 Aligned_cols=85 Identities=32% Similarity=0.562 Sum_probs=76.2
Q ss_pred ChHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCCcccccc-cCcHHHHHHHHHhcCchhh
Q 036657 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQ-RGTFEKAFVHHENNFPDKV 79 (481)
Q Consensus 1 ~~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~q-~g~~~~~~~~~~~~~~~~v 79 (481)
|+|.+||++|+++|||||+|||+|+|||+||++|++|+ ++|+||||+|||+|||+| .|.+ ..++|
T Consensus 72 ~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v 137 (187)
T PLN03194 72 DKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEI 137 (187)
T ss_pred HHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHH
Confidence 46899999999999999999999999999999999984 479999999999999997 5542 12789
Q ss_pred hhHHHHHHHhhccCCCCCCC
Q 036657 80 QKWRDVLTEASNFSGYDSTE 99 (481)
Q Consensus 80 ~~w~~al~~~~~~~g~~~~~ 99 (481)
++||+||++||+++||+++.
T Consensus 138 ~~Wr~AL~~va~l~G~~~~~ 157 (187)
T PLN03194 138 RRFNWALEEAKYTVGLTFDS 157 (187)
T ss_pred HHHHHHHHHHhccccccCCC
Confidence 99999999999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=2.7e-17 Score=186.61 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=115.2
Q ss_pred CCCCCcccccccchhhhhhhcCC--CCcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC
Q 036657 242 KEPGKRSRLWDHNDVCYVLKKNK--GTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ 319 (481)
Q Consensus 242 ~~~~~~~rl~~~~~~~~~l~~~~--~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~ 319 (481)
.+|..+.+.|...+.+....... ....++.+.+..... ....+..|..+++|++|++++|.+ ...+|.
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i--~~~~~~~~~~l~~L~~L~Ls~n~~--------~~~ip~ 111 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQL--------SGPIPD 111 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCc--cccCChHHhCCCCCCEEECCCCcc--------CCcCCh
Confidence 34555666776443222222111 133566665554332 223366788888999999988874 345666
Q ss_pred ccc-cccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCcccCC-CCCCCCC
Q 036657 320 GLE-YLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNL 396 (481)
Q Consensus 320 ~l~-~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L 396 (481)
.+. .+. +|++|++++|.+....+...+.+|++|+|++|.+. .+|..++.+++|++|++++|.....+|. ++++++|
T Consensus 112 ~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 190 (968)
T PLN00113 112 DIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190 (968)
T ss_pred HHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence 554 455 77777777776653222223566666666666665 4566666666666666666643345554 5666666
Q ss_pred CEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCC
Q 036657 397 ERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQ 459 (481)
Q Consensus 397 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~ 459 (481)
++|++++|.....+|..++++++|++|++++|.-...+|..+. +++|++|++++|.....+|.
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 6666666554445555555566666666555433334444442 55555555555442233443
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=5.2e-17 Score=185.68 Aligned_cols=88 Identities=41% Similarity=0.583 Sum_probs=81.0
Q ss_pred CCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcC
Q 036657 394 PNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTA 473 (481)
Q Consensus 394 ~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~ 473 (481)
++|+.|++++|..+.++|.+++++++|+.|++++|+.++.+|..+++++|+.|++++|+++..+|....+|+.|+|++|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 46778888888888889999999999999999999999999998899999999999999999999998999999999999
Q ss_pred CccCCCCC
Q 036657 474 IEEVPSSI 481 (481)
Q Consensus 474 l~~lP~si 481 (481)
|+++|.+|
T Consensus 858 i~~iP~si 865 (1153)
T PLN03210 858 IEEVPWWI 865 (1153)
T ss_pred CccChHHH
Confidence 99999753
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.63 E-value=9.7e-16 Score=173.96 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=77.4
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CCCceEEEcCCCCcc-c
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYSKVE-Q 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~~i~-~ 362 (481)
+..+..+++|++|++++|.+ ...+|..+..++ +|++|++++|.+. .+|..+. +.+|++|++++|++. .
T Consensus 157 p~~~~~l~~L~~L~L~~n~l--------~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVL--------VGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred ChHHhcCCCCCEEECccCcc--------cccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 34455566666666655543 334555555555 5555555555543 3444443 555555555555554 3
Q ss_pred ccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCC-CC
Q 036657 363 IWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI-HF 440 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~-~l 440 (481)
+|..+..+++|++|++++|.....+|. ++++++|++|++++|.....+|.+++++++|++|++++|.-...+|..+ ++
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 455555555555555555532233443 5555555555555543333444445555555555555433222333332 24
Q ss_pred CCCcEEEeecC
Q 036657 441 VSPITIDFSFC 451 (481)
Q Consensus 441 ~~L~~L~l~~c 451 (481)
++|+.|++++|
T Consensus 308 ~~L~~L~l~~n 318 (968)
T PLN00113 308 QNLEILHLFSN 318 (968)
T ss_pred CCCcEEECCCC
Confidence 44444444443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=2.8e-17 Score=165.01 Aligned_cols=205 Identities=15% Similarity=0.232 Sum_probs=158.3
Q ss_pred cCCCCcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC
Q 036657 262 KNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML 341 (481)
Q Consensus 262 ~~~~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l 341 (481)
.-+....+|++.+..++.+...++++ +-+|..|.+|+++.|. ....|.++.+-. ++-+|+++.|.+.++
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNq---------L~EvP~~LE~AK-n~iVLNLS~N~IetI 141 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQ---------LREVPTNLEYAK-NSIVLNLSYNNIETI 141 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhh---------hhhcchhhhhhc-CcEEEEcccCccccC
Confidence 33445566666665555545555444 4568999999999998 677888888877 888999999999999
Q ss_pred CCCCC--CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcc--cCCCCCCCCCCEEeccCCC-CCccccccccC
Q 036657 342 PFDFE--PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVR--MLDLSETPNLERTNLLNCR-DLACVRSSIEN 416 (481)
Q Consensus 342 P~~~~--l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~--lp~~~~l~~L~~L~L~~c~-~l~~lp~~i~~ 416 (481)
|.... +..|-.|||++|+++.+|..+..|.+|+.|+|++|. +.. +-.+..+++|++|.+++.. -+..+|.++..
T Consensus 142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 142 PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 98844 889999999999999999999999999999999986 221 2225567778888888743 34568888888
Q ss_pred CCCCCEEeeeCCCCCccCCCCC-CCCCCcEEEeecCCCCCccCCc---ccccceEeeeCcCCccCCCC
Q 036657 417 FNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 417 L~~L~~L~l~~c~~l~~lp~~~-~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
|.+|+.++++ |+++..+|... ++++|+.|+||+ ++++++.-. -.+|++|+|+.|+++.+|+.
T Consensus 221 l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 221 LHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred hhhhhhcccc-ccCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 8899999998 78888888866 588888888888 457776642 34678888888888888864
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3.8e-17 Score=139.81 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=99.1
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccccccc
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
-.|.++..|.++.|. ...+|..+..+. +|..|++.+|.++.+|.++. +++|+.|++.-|++..+|.+++
T Consensus 30 f~~s~ITrLtLSHNK---------l~~vppnia~l~-nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK---------LTVVPPNIAELK-NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cchhhhhhhhcccCc---------eeecCCcHHHhh-hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345556666666665 455666666666 66666666666666666655 6666666666666666666666
Q ss_pred CCCCCcEEeccCCCCCc--ccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCc
Q 036657 369 KAFKLKYIDISHSQQLV--RMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPI 444 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~--~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~ 444 (481)
.++-|..||+++|. +. .+|. |-.++.|+-|++++ +..+.+|..+|++++|+.|.+++ +.+-++|..++ ++.|+
T Consensus 100 s~p~levldltynn-l~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 100 SFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLR 176 (264)
T ss_pred CCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHH
Confidence 66666666666652 32 3454 55566666666666 45566666666666666666665 45666666664 66666
Q ss_pred EEEeecCCCCCccCCccccc
Q 036657 445 TIDFSFCVNLTEFPQISGNI 464 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~~~~~L 464 (481)
+|++.| +.+.-+|..++++
T Consensus 177 elhiqg-nrl~vlppel~~l 195 (264)
T KOG0617|consen 177 ELHIQG-NRLTVLPPELANL 195 (264)
T ss_pred HHhccc-ceeeecChhhhhh
Confidence 666666 3366666544444
No 9
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.59 E-value=4.2e-16 Score=135.28 Aligned_cols=86 Identities=37% Similarity=0.623 Sum_probs=76.1
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCC--CeEEeEEeecCCcccc-cccCcHHHHHHHHHhcCc--
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNG--QIVIPVFYQVDPSDVR-KQRGTFEKAFVHHENNFP-- 76 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~--~~v~pvfy~v~p~~v~-~q~g~~~~~~~~~~~~~~-- 76 (481)
++.+||++||++|||||+||++|.||++||..++++....+ ++|+||||+|.+++|+ +|+|.|+.+|..+.....
T Consensus 47 ~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~ 126 (141)
T PF01582_consen 47 NIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDD 126 (141)
T ss_dssp HHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSG
T ss_pred hhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCC
Confidence 47889999999999999999999999999999999987655 8999999999999999 799999999988777655
Q ss_pred ---hhhhhHHHHHH
Q 036657 77 ---DKVQKWRDVLT 87 (481)
Q Consensus 77 ---~~v~~w~~al~ 87 (481)
++...|++++.
T Consensus 127 ~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 127 SREDRSWFWKKLRY 140 (141)
T ss_dssp GGGGHHHHHHHHHH
T ss_pred CccHHHHHHHHHhc
Confidence 35779999875
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=7.3e-17 Score=162.07 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=76.1
Q ss_pred CCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCC
Q 036657 341 LPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFN 418 (481)
Q Consensus 341 lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~ 418 (481)
+|.++. +.||..+|++.|++..+|+.+.++++|+.|+||+|+ ++++.. .+...+|++|+++. +.+..+|..+..|+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLT 291 (1255)
T ss_pred CCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhcccc-chhccchHHHhhhH
Confidence 444444 555666666666666666666666666666666653 555443 44455555666655 44555666666666
Q ss_pred CCCEEeeeCCCC--CccCCCCCC-CCCCcEEEeecCCCCCccCCcc---cccceEeeeCcCCccCCCC
Q 036657 419 NLSMLCFKGCES--LRSFPRGIH-FVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 419 ~L~~L~l~~c~~--l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l~~lP~s 480 (481)
+|+.|.+.+ ++ ...+|++++ +.+|+.+..++ ++|+-+|+.+ +.|+.|.|++|++-.+|..
T Consensus 292 kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 292 KLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred HHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhh
Confidence 666665553 22 234566554 66666666655 3455566532 3456666666666666553
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.7e-16 Score=135.84 Aligned_cols=150 Identities=17% Similarity=0.262 Sum_probs=84.3
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNC 404 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c 404 (481)
++..|.+++|.+..+|+.+. +.+|++|++.+|+++++|..+..|++||+|+++-|+ +..+|. |+.+|.|+.|++.++
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhcccc
Confidence 45555566666666665554 666666666666666666666666666666665553 555555 666666666666552
Q ss_pred C-CCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCcccc---cceEeeeCcCCccCCC
Q 036657 405 R-DLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQISGN---IIELKLWYTAIEEVPS 479 (481)
Q Consensus 405 ~-~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~~~~---L~~L~L~~~~l~~lP~ 479 (481)
+ +-..+|..|..++.|+.|.+++ +..+-+|..++ +++|+.|.+.++ .+-++|..++. |++|++.||+++.+|+
T Consensus 113 nl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccceeeecCh
Confidence 2 1123555555555566666554 45555555553 666666666552 35555554333 3556666666665555
No 12
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.45 E-value=2e-14 Score=140.23 Aligned_cols=92 Identities=29% Similarity=0.528 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhhhCCCchhHHHHhhhhCCC-ChhHHHHHHHHHhcCC------chhhHHHHHhccccCchhhHHHhhhh
Q 036657 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHK-SKQQWKDKLNNLKLIS------EPSIYKVLKISYDELNSEVKEIFIDI 179 (481)
Q Consensus 107 ~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k-~~~~W~~~l~~l~~~~------~~~i~~~L~lSYd~L~~~~K~cFl~~ 179 (481)
+.+.+++++|+++|+|+|||++++|+.|+.+ +..+|+++++++.+.. ...+..++.+||+.||++.|+||+||
T Consensus 179 ~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L 258 (287)
T PF00931_consen 179 EDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYL 258 (287)
T ss_dssp TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhC
Confidence 3456789999999999999999999999766 8899999998866442 57899999999999999999999999
Q ss_pred ccCCCCCC--HHHHHHHhcCC
Q 036657 180 ACFFKGED--IDFMTRIHDDP 198 (481)
Q Consensus 180 a~Fp~~~~--~~~l~~~~~~~ 198 (481)
|+||.++. .+.++++|.++
T Consensus 259 ~~f~~~~~i~~~~li~lW~~e 279 (287)
T PF00931_consen 259 SIFPEGVPIPRERLIRLWVAE 279 (287)
T ss_dssp GGSGTTS-EEHHHHHHHHTT-
T ss_pred cCCCCCceECHHHHHHHHHHC
Confidence 99999976 56699999886
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=2.7e-13 Score=146.46 Aligned_cols=165 Identities=17% Similarity=0.246 Sum_probs=82.5
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFK 372 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 372 (481)
.+|+.|++++|.+ ..+|.. ++.+|+.|++++|.+..+|..+ +.+|++|++++|++..+|..+. .+
T Consensus 220 ~nL~~L~Ls~N~L---------tsLP~~---l~~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~--~s 284 (754)
T PRK15370 220 GNIKTLYANSNQL---------TSIPAT---LPDTIQEMELSINRITELPERL-PSALQSLDLFHNKISCLPENLP--EE 284 (754)
T ss_pred cCCCEEECCCCcc---------ccCChh---hhccccEEECcCCccCcCChhH-hCCCCEEECcCCccCccccccC--CC
Confidence 3666666666652 234432 2335666666666666666544 2456666666666666665443 35
Q ss_pred CcEEeccCCCCCcccCC-CC-------------------CCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCc
Q 036657 373 LKYIDISHSQQLVRMLD-LS-------------------ETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLR 432 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~-~~-------------------~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~ 432 (481)
|++|++++| .+..+|. +. -.++|+.|++++| .+..+|.++. ++|+.|++++| .+.
T Consensus 285 L~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N-~L~ 359 (754)
T PRK15370 285 LRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPASLP--PELQVLDVSKN-QIT 359 (754)
T ss_pred CcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChhhc--CcccEEECCCC-CCC
Confidence 666666666 3555553 21 0123444444442 2333443332 34555555542 344
Q ss_pred cCCCCCCCCCCcEEEeecCCCCCccCCc-ccccceEeeeCcCCccCCC
Q 036657 433 SFPRGIHFVSPITIDFSFCVNLTEFPQI-SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 433 ~lp~~~~l~~L~~L~l~~c~~L~~lp~~-~~~L~~L~L~~~~l~~lP~ 479 (481)
.+|..+ .++|+.|++++|. +..+|.. ...|+.|++++|+|..+|.
T Consensus 360 ~LP~~l-p~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 360 VLPETL-PPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNLVRLPE 405 (754)
T ss_pred cCChhh-cCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCcccCch
Confidence 444322 2455555555542 4455542 2244555555555555554
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.42 E-value=9.8e-14 Score=139.01 Aligned_cols=199 Identities=15% Similarity=0.218 Sum_probs=148.8
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
.+++.+.+.-+. ...+..+.++-+..||+|+++.|. ...+|..-..-..++++|++.+|.++.+-.. |
T Consensus 125 ghl~~L~L~~N~--I~sv~se~L~~l~alrslDLSrN~---------is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 125 GHLEKLDLRHNL--ISSVTSEELSALPALRSLDLSRNL---------ISEIPKPSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred cceeEEeeeccc--cccccHHHHHhHhhhhhhhhhhch---------hhcccCCCCCCCCCceEEeeccccccccccccc
Confidence 345555554333 345678888889999999999887 3444442222223899999999999988765 5
Q ss_pred C-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCC
Q 036657 346 E-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNL 420 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L 420 (481)
. +.+|.+|.|+.|+++.+|.. +++|++|+.|+|..|+ ++.... |.++++|+.|.+.. +.+..+..+ |..+.++
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKM 271 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeeccc
Confidence 5 88999999999999999876 6669999999999885 666544 88999999999887 456666544 6678888
Q ss_pred CEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccCCCC
Q 036657 421 SMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~s 480 (481)
++|+|.. +++..+..+. ++++|+.|++|.+. +..+.. +..+|+.|+|+.|+|+++|++
T Consensus 272 e~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 272 EHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ceeeccc-chhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChh
Confidence 8999884 7788777654 68888999888843 666543 356788888888888888763
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.38 E-value=5.1e-15 Score=142.18 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=83.7
Q ss_pred eecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCC
Q 036657 315 LHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSE 392 (481)
Q Consensus 315 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~ 392 (481)
..+|++++.+. .+..|+..+|.+.++|..+. +..|..|++.+|+++.+|+..-.++.|++||...| .+..+|. ++.
T Consensus 127 ~el~~~i~~~~-~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~ 204 (565)
T KOG0472|consen 127 KELPDSIGRLL-DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGG 204 (565)
T ss_pred eecCchHHHHh-hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcc
Confidence 44444444444 44444444555555555433 44555555555555555544444555555555555 3555554 566
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCCc---ccccceE
Q 036657 393 TPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQI---SGNIIEL 467 (481)
Q Consensus 393 l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L 467 (481)
+.+|+.|++.. +.+..+| +|+.+..|..|++.. +.++.+|... ++++|..|++++ ++++++|+. +.+|++|
T Consensus 205 l~~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 205 LESLELLYLRR-NKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERL 280 (565)
T ss_pred hhhhHHHHhhh-cccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhh
Confidence 66666555554 3344444 333333333333331 3333333333 266677777766 457777763 3445677
Q ss_pred eeeCcCCccCCCC
Q 036657 468 KLWYTAIEEVPSS 480 (481)
Q Consensus 468 ~L~~~~l~~lP~s 480 (481)
|+++|.|+.+|.+
T Consensus 281 DlSNN~is~Lp~s 293 (565)
T KOG0472|consen 281 DLSNNDISSLPYS 293 (565)
T ss_pred cccCCccccCCcc
Confidence 7777777777765
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=1.7e-12 Score=140.31 Aligned_cols=166 Identities=16% Similarity=0.254 Sum_probs=125.2
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFK 372 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 372 (481)
++|+.|++.+|. ...+|..+. .+|++|++++|.++.+|..+ +.+|+.|+|++|++..+|..+. .+
T Consensus 199 ~~L~~L~Ls~N~---------LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~ 263 (754)
T PRK15370 199 EQITTLILDNNE---------LKSLPENLQ---GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SA 263 (754)
T ss_pred cCCcEEEecCCC---------CCcCChhhc---cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CC
Confidence 579999999988 446776543 38999999999999999765 4689999999999999998764 58
Q ss_pred CcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCcccccccc-------------------CCCCCCEEeeeCCCCCc
Q 036657 373 LKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIE-------------------NFNNLSMLCFKGCESLR 432 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~-------------------~L~~L~~L~l~~c~~l~ 432 (481)
|+.|++++| .+..+|+ +. ++|+.|++++| .+..+|..+. -.++|+.|++++| .++
T Consensus 264 L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt 338 (754)
T PRK15370 264 LQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALT 338 (754)
T ss_pred CCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccc
Confidence 999999988 5888887 53 58999999985 5666664332 1135666666653 455
Q ss_pred cCCCCCCCCCCcEEEeecCCCCCccCC-cccccceEeeeCcCCccCCCC
Q 036657 433 SFPRGIHFVSPITIDFSFCVNLTEFPQ-ISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 433 ~lp~~~~l~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~~~~l~~lP~s 480 (481)
.+|..+ .++|+.|++++|. +..+|. .+.+|+.|+|++|.|+.+|+.
T Consensus 339 ~LP~~l-~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 339 SLPASL-PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNALTNLPEN 385 (754)
T ss_pred cCChhh-cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcCCCCCHh
Confidence 666533 3678888888864 777776 456788888888888888864
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=3.5e-12 Score=137.29 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCCC
Q 036657 419 NLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 419 ~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~s 480 (481)
+|+.|++++ +.+..+|.. .++|+.|+++++. +..+|..+.+|+.|++++|+|+.+|.+
T Consensus 383 ~L~~LdLs~-N~Lt~LP~l--~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~NqLt~LP~s 440 (788)
T PRK15387 383 GLKELIVSG-NRLTSLPVL--PSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPES 440 (788)
T ss_pred ccceEEecC-CcccCCCCc--ccCCCEEEccCCc-CCCCCcchhhhhhhhhccCcccccChH
Confidence 455555553 344444432 3455666666643 555665555566666666666666653
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.33 E-value=1.4e-14 Score=139.20 Aligned_cols=189 Identities=18% Similarity=0.207 Sum_probs=163.5
Q ss_pred ecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CCCCCceE
Q 036657 274 LDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FEPENLIE 352 (481)
Q Consensus 274 l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~l~~L~~ 352 (481)
++.+..+...+ ++.+..+..|..|+-.+|. ...+|++++.+. .+..|++.++.++.+|+. +.++.|+.
T Consensus 119 l~~s~n~~~el-~~~i~~~~~l~dl~~~~N~---------i~slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 119 LDCSSNELKEL-PDSIGRLLDLEDLDATNNQ---------ISSLPEDMVNLS-KLSKLDLEGNKLKALPENHIAMKRLKH 187 (565)
T ss_pred hhccccceeec-CchHHHHhhhhhhhccccc---------cccCchHHHHHH-HHHHhhccccchhhCCHHHHHHHHHHh
Confidence 44444433333 4556677888888888887 678999999999 999999999999999987 45999999
Q ss_pred EEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCcccccccc-CCCCCCEEeeeCCCCC
Q 036657 353 LNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIE-NFNNLSMLCFKGCESL 431 (481)
Q Consensus 353 L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~l~~c~~l 431 (481)
||...|-++.+|+.++.+.+|..|++..|+ +..+|.|+++..|.+|.+.. +.++.+|...+ ++++|..|++++ +++
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nkl 264 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKL 264 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-ccc
Confidence 999999999999999999999999999995 99999999999999999987 67888998876 899999999997 799
Q ss_pred ccCCCCCC-CCCCcEEEeecCCCCCccCCccccc--ceEeeeCcCCccC
Q 036657 432 RSFPRGIH-FVSPITIDFSFCVNLTEFPQISGNI--IELKLWYTAIEEV 477 (481)
Q Consensus 432 ~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~~~~L--~~L~L~~~~l~~l 477 (481)
+++|..+- +.+|++|++|++ .+..+|-.+++| +.|-+.||.++++
T Consensus 265 ke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlhL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLHLKFLALEGNPLRTI 312 (565)
T ss_pred ccCchHHHHhhhhhhhcccCC-ccccCCcccccceeeehhhcCCchHHH
Confidence 99999885 999999999995 599999988877 6788889988654
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.33 E-value=8.8e-13 Score=132.29 Aligned_cols=188 Identities=19% Similarity=0.235 Sum_probs=118.3
Q ss_pred CcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C-CCCCceEEE
Q 036657 277 SKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F-EPENLIELN 354 (481)
Q Consensus 277 ~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~-~l~~L~~L~ 354 (481)
+++....+....|+++++|+.|++..|.+ ...---.|..|+ +|+.|.+..|.+..|.+. | .+.++++|+
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~i--------rive~ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRI--------RIVEGLTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccce--------eeehhhhhcCch-hhhhhhhhhcCcccccCcceeeecccceee
Confidence 33333445556666666666666666652 111122455566 777777777777777665 2 388888888
Q ss_pred cCCCCccccccc-ccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCC
Q 036657 355 LPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCES 430 (481)
Q Consensus 355 L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~ 430 (481)
|..|++..+-++ +.+|+.|+.|++|+|. +..+. + .+..+.|+.|+|+. +.+.+++++ +..|..|+.|+|+. +.
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Ns 352 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NS 352 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cc
Confidence 888888877554 6778888888888885 66654 3 77788899999987 556666532 44444444444443 22
Q ss_pred CccCCC----------------------------CC-CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccC
Q 036657 431 LRSFPR----------------------------GI-HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEV 477 (481)
Q Consensus 431 l~~lp~----------------------------~~-~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~l 477 (481)
+..+.+ .+ +|++|+.|.+.| ++++.+|. .+.+|+.|+|.+|.|..+
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceee
Confidence 222221 11 267777777777 45777775 355777888887777554
No 20
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.30 E-value=1.2e-11 Score=107.14 Aligned_cols=90 Identities=42% Similarity=0.761 Sum_probs=78.4
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhh-CCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCchhh-
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKM-NGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFPDKV- 79 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~-~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~~~v- 79 (481)
++.+||++|++.|+|+|++|..|.||..|+....++... .++.|+||+|+..|+++..+.+.++.++..+...+.+..
T Consensus 47 ~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~ 126 (140)
T smart00255 47 EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEK 126 (140)
T ss_pred HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchh
Confidence 478999999999999999999999999999999998654 678999999999999999999999999988755555333
Q ss_pred -hhHHHHHHHhhc
Q 036657 80 -QKWRDVLTEASN 91 (481)
Q Consensus 80 -~~w~~al~~~~~ 91 (481)
..|+.++..+++
T Consensus 127 ~~fW~~~~~~l~~ 139 (140)
T smart00255 127 ERFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHHHHhcc
Confidence 689999888764
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=1.9e-11 Score=131.76 Aligned_cols=162 Identities=22% Similarity=0.208 Sum_probs=88.3
Q ss_pred CCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc-----
Q 036657 294 NLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK----- 368 (481)
Q Consensus 294 ~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~----- 368 (481)
+|+.|.+.+|. ...+|. ++.+|++|++++|.++.+|.. +.+|+.|++.+|.+..+|....
T Consensus 223 ~L~~L~L~~N~---------Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L 287 (788)
T PRK15387 223 HITTLVIPDNN---------LTSLPA----LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKL 287 (788)
T ss_pred CCCEEEccCCc---------CCCCCC----CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEE
Confidence 56666666665 233443 223666666666666666542 3455555555555444443110
Q ss_pred ------------CCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCC
Q 036657 369 ------------KAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPR 436 (481)
Q Consensus 369 ------------~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~ 436 (481)
.+++|+.|++++| .+..+|.+ ..+|+.|++++| .+..+|.. ..+|+.|++++ +.++.+|.
T Consensus 288 ~Ls~N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~ 359 (788)
T PRK15387 288 WIFGNQLTSLPVLPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSD-NQLASLPT 359 (788)
T ss_pred ECcCCccccccccccccceeECCCC-ccccCCCC--cccccccccccC-cccccccc---ccccceEecCC-CccCCCCC
Confidence 1245666666665 35555542 124555555553 34445421 24788888886 67777775
Q ss_pred CCC------------------CCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCC
Q 036657 437 GIH------------------FVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 437 ~~~------------------l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~ 479 (481)
... +.+|+.|+++++ .+..+|..+++|+.|++++|.|+.+|.
T Consensus 360 lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 360 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPM 419 (788)
T ss_pred CCcccceehhhccccccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCCCCCc
Confidence 211 124556666653 366666666666666666666666664
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.27 E-value=5.2e-13 Score=140.41 Aligned_cols=103 Identities=25% Similarity=0.309 Sum_probs=88.5
Q ss_pred ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCc
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPI 444 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~ 444 (481)
+.++++||.|+|++|+ +..+|+ +.++..|+.|+|+| +.+..+|..+.++..|++|...+ +.+..+|....++.|+
T Consensus 379 l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeecccc-cccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcce
Confidence 4578999999999995 999998 89999999999999 78999999999999999999885 7899999766799999
Q ss_pred EEEeecCCCCCc--cCC-cc-cccceEeeeCcC
Q 036657 445 TIDFSFCVNLTE--FPQ-IS-GNIIELKLWYTA 473 (481)
Q Consensus 445 ~L~l~~c~~L~~--lp~-~~-~~L~~L~L~~~~ 473 (481)
.+|++. +.|.. +|. .. ++|++|||+||.
T Consensus 456 ~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 456 VLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred EEeccc-chhhhhhhhhhCCCcccceeeccCCc
Confidence 999976 44654 444 23 799999999886
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=4e-12 Score=127.43 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=138.9
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~ 365 (481)
+..+..+..|..|.++.|. .-.+|..+..+. .|.||+++.|.+..+|..++.--|+.|-+++|+++.+|.
T Consensus 91 p~~~~~f~~Le~liLy~n~---------~r~ip~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNC---------IRTIPEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPE 160 (722)
T ss_pred chHHHHHHHHHHHHHHhcc---------ceecchhhhhhh-HHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCc
Confidence 4555566667778888776 577899999998 999999999999999999887789999999999999999
Q ss_pred cccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCC-CCCCC
Q 036657 366 GEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI-HFVSP 443 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~-~l~~L 443 (481)
+++.+++|..||.+.| .+..+|. ++++.+|+.|.+.. +.+..+|+.+..|+ |..||++ |+++..+|-.+ +|+.|
T Consensus 161 ~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfS-cNkis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFS-CNKISYLPVDFRKMRHL 236 (722)
T ss_pred ccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeecc-cCceeecchhhhhhhhh
Confidence 9999999999999999 5888887 99999999999998 67889999998765 9999999 89999999888 49999
Q ss_pred cEEEeecCCCCCccCC
Q 036657 444 ITIDFSFCVNLTEFPQ 459 (481)
Q Consensus 444 ~~L~l~~c~~L~~lp~ 459 (481)
++|-|.+++ |++=|.
T Consensus 237 q~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 237 QVLQLENNP-LQSPPA 251 (722)
T ss_pred eeeeeccCC-CCCChH
Confidence 999998865 777665
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.02 E-value=3e-11 Score=127.38 Aligned_cols=154 Identities=20% Similarity=0.266 Sum_probs=108.4
Q ss_pred cccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEe
Q 036657 323 YLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTN 400 (481)
Q Consensus 323 ~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~ 400 (481)
..|.+|.|++++.+.+..+|++++ +.+|..|+..+|++..+|..+....+|+.|.+.+| .+..+|+ ..++.+|++|+
T Consensus 238 p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeee
Confidence 345688889999888888997776 88899999999988888888888889999988888 4888888 56689999999
Q ss_pred ccCCCCCccccccccC-CC-CCCEEeeeCCCCCccCCC--------------------------CCCCCCCcEEEeecCC
Q 036657 401 LLNCRDLACVRSSIEN-FN-NLSMLCFKGCESLRSFPR--------------------------GIHFVSPITIDFSFCV 452 (481)
Q Consensus 401 L~~c~~l~~lp~~i~~-L~-~L~~L~l~~c~~l~~lp~--------------------------~~~l~~L~~L~l~~c~ 452 (481)
|.. +++..+|..+-. +. .|+.|+.+ |+.+..+|. ..++++|+.|+|++ +
T Consensus 317 L~~-N~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-N 393 (1081)
T KOG0618|consen 317 LQS-NNLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-N 393 (1081)
T ss_pred ehh-ccccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-c
Confidence 987 567777653221 11 13333333 233333332 22466777777777 3
Q ss_pred CCCccCCc----ccccceEeeeCcCCccCCCC
Q 036657 453 NLTEFPQI----SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 453 ~L~~lp~~----~~~L~~L~L~~~~l~~lP~s 480 (481)
.|..||.. +..|++|+|+||.++.+|.+
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t 425 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLTTLPDT 425 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhhhhhHH
Confidence 47777762 34457777777777777754
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=2.5e-10 Score=125.52 Aligned_cols=151 Identities=23% Similarity=0.222 Sum_probs=108.7
Q ss_pred CCcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCc-cccccccccceeeccc-cCCCCC
Q 036657 265 GTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQG-LEYLPEELRYLHWHEY-SLKMLP 342 (481)
Q Consensus 265 ~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~-~l~~lP 342 (481)
.+..+|++++.......+.-. ...++|++|-+.+|.. ....++.. |..+| .||+|++++| .+..||
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~-------~l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSD-------WLLEISGEFFRSLP-LLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccchhhccCC----CCCCccceEEEeecch-------hhhhcCHHHHhhCc-ceEEEECCCCCccCcCC
Confidence 345667776665443222111 2344799999998751 02444544 66688 9999999976 678999
Q ss_pred CCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCC--CCccccccccCCC
Q 036657 343 FDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCR--DLACVRSSIENFN 418 (481)
Q Consensus 343 ~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~--~l~~lp~~i~~L~ 418 (481)
.+++ +-+|++|+++++.+.++|.++++|++|.+|++..+..+..+|. ...+++|++|.+..-. .-...-..+.+|.
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 9998 9999999999999999999999999999999999988888888 5569999999987522 1111122345566
Q ss_pred CCCEEeeeC
Q 036657 419 NLSMLCFKG 427 (481)
Q Consensus 419 ~L~~L~l~~ 427 (481)
+|+.+.+..
T Consensus 669 ~L~~ls~~~ 677 (889)
T KOG4658|consen 669 HLENLSITI 677 (889)
T ss_pred chhhheeec
Confidence 666665543
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=6e-11 Score=114.35 Aligned_cols=199 Identities=15% Similarity=0.163 Sum_probs=124.6
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~ 346 (481)
.+..|.++.+. ...+.+.+|+.+++||.|++++|.+ ...-|+.|..++.-++.+..++|.++++|.. |.
T Consensus 68 ~tveirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~I--------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNI--------SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cceEEEeccCC--cccCChhhccchhhhceecccccch--------hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 34445555444 4567899999999999999999985 4445677888883333344444788888876 43
Q ss_pred -CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC-------------------
Q 036657 347 -PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN------------------- 403 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~------------------- 403 (481)
+..|+-|.+.-|++.-++. .+..|++|..|.+..|. +..++. +..+.+++++.+..
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 5555555555555554332 24455555555555442 444433 33333333332211
Q ss_pred ------------------------------------------CCCCcccc-ccccCCCCCCEEeeeCCCCCccCCCCC--
Q 036657 404 ------------------------------------------CRDLACVR-SSIENFNNLSMLCFKGCESLRSFPRGI-- 438 (481)
Q Consensus 404 ------------------------------------------c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~-- 438 (481)
|......| ..|+.|++|++|++++ +.++.+-...
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe 295 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAFE 295 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhhhc
Confidence 11111112 1377899999999996 7888876543
Q ss_pred CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccCCC
Q 036657 439 HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 439 ~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~ 479 (481)
++.+++.|.|.+ ++++.+.. ....|+.|+|.+|+|+.+-+
T Consensus 296 ~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 296 GAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred chhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 488899999988 45777665 35677899999999977543
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=6.4e-10 Score=109.92 Aligned_cols=180 Identities=19% Similarity=0.196 Sum_probs=112.2
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCcccccc--ccccceeeccccCCC-----CCCCCC-C-CCceEEEcC
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLP--EELRYLHWHEYSLKM-----LPFDFE-P-ENLIELNLP 356 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~--~~Lr~L~l~~~~l~~-----lP~~~~-l-~~L~~L~L~ 356 (481)
...|..+++|+.|++++|.+ ....+..+..+. .+|++|++++|.+.. +...+. + .+|++|+++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~--------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNAL--------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred HHHHHhcCceeEEEccCCCC--------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC
Confidence 45667788888888887774 222333333333 148888888877652 222222 3 788888888
Q ss_pred CCCcc-----cccccccCCCCCcEEeccCCCCCc-----ccCC-CCCCCCCCEEeccCCCCC----ccccccccCCCCCC
Q 036657 357 YSKVE-----QIWKGEKKAFKLKYIDISHSQQLV-----RMLD-LSETPNLERTNLLNCRDL----ACVRSSIENFNNLS 421 (481)
Q Consensus 357 ~~~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~-----~lp~-~~~l~~L~~L~L~~c~~l----~~lp~~i~~L~~L~ 421 (481)
+|.++ .++..+..+++|++|++++|. +. .++. +..+++|++|++++|..- ..++..+..+++|+
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 88776 344456677788888888874 44 2222 455678888888886421 23445566778888
Q ss_pred EEeeeCCCCCcc-----CCCCC--CCCCCcEEEeecCCCCC-----ccCC---cccccceEeeeCcCCcc
Q 036657 422 MLCFKGCESLRS-----FPRGI--HFVSPITIDFSFCVNLT-----EFPQ---ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 422 ~L~l~~c~~l~~-----lp~~~--~l~~L~~L~l~~c~~L~-----~lp~---~~~~L~~L~L~~~~l~~ 476 (481)
+|++++| .+.. +...+ ..+.|++|++++|. +. .++. ...+|+++++++|.++.
T Consensus 225 ~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 225 VLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred EEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 8888875 3432 11111 24788888888875 42 1211 23577888888888764
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=5.6e-11 Score=119.33 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=138.0
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAF 371 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~ 371 (481)
..-.+.+++.|. ...+|..+..+. .|..|.+..|.+..+|..+. +..|.+|+|+.|++..+|.++..|+
T Consensus 75 tdt~~aDlsrNR---------~~elp~~~~~f~-~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp 144 (722)
T KOG0532|consen 75 TDTVFADLSRNR---------FSELPEEACAFV-SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP 144 (722)
T ss_pred cchhhhhccccc---------cccCchHHHHHH-HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc
Confidence 333456667666 466777777777 88888888888899998877 8889999999999999998888775
Q ss_pred CCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeec
Q 036657 372 KLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSF 450 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~ 450 (481)
|+.|-+++| +++.+|+ ++.++.|..|+.+. +.+..+|+.++.+.+|+.|++.. +.+..+|....--.|.+|+++.
T Consensus 145 -Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfSc 220 (722)
T KOG0532|consen 145 -LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSC 220 (722)
T ss_pred -ceeEEEecC-ccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeeccc
Confidence 888888888 4888887 88888888999887 56788888899999999999885 6888888866544578888865
Q ss_pred CCCCCccCCcccc---cceEeeeCcCCccCCCC
Q 036657 451 CVNLTEFPQISGN---IIELKLWYTAIEEVPSS 480 (481)
Q Consensus 451 c~~L~~lp~~~~~---L~~L~L~~~~l~~lP~s 480 (481)
+++..+|-.+.+ |++|.|.+|.++.-|..
T Consensus 221 -Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 221 -NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred -CceeecchhhhhhhhheeeeeccCCCCCChHH
Confidence 679999986554 47888999988876653
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.5e-09 Score=96.73 Aligned_cols=98 Identities=20% Similarity=0.325 Sum_probs=22.5
Q ss_pred cccceeeccccCCCCCCCC-CCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-C-CCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDF-EPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-L-SETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~-~~l~~L~~L~L~~ 403 (481)
++|.|+++++.++.+..-- .+.+|+.|+|++|.|+.+. ++..+++|+.|++++|. ++.++. + ..+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcC
Confidence 4555555555555543221 2455555555555555553 34455555555555552 444432 2 2355555555554
Q ss_pred CCCCcccc--ccccCCCCCCEEeeeC
Q 036657 404 CRDLACVR--SSIENFNNLSMLCFKG 427 (481)
Q Consensus 404 c~~l~~lp--~~i~~L~~L~~L~l~~ 427 (481)
+ .+..+. ..+..+++|+.|++.+
T Consensus 98 N-~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 98 N-KISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp S----SCCCCGGGGG-TT--EEE-TT
T ss_pred C-cCCChHHhHHHHcCCCcceeeccC
Confidence 2 222221 1244455555555554
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=1.7e-09 Score=110.46 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=133.3
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~ 365 (481)
......+.+..|.+.++. ...++.....+..+|+.|+++++.+..+|..+. +++|+.|++.+|++..+|.
T Consensus 110 ~~~~~~~~l~~L~l~~n~---------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~ 180 (394)
T COG4886 110 SELLELTNLTSLDLDNNN---------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK 180 (394)
T ss_pred hhhhcccceeEEecCCcc---------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhh
Confidence 334455778888888877 566676666551288888888888888875555 8888888888888888888
Q ss_pred cccCCCCCcEEeccCCCCCcccCCC-CCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCC
Q 036657 366 GEKKAFKLKYIDISHSQQLVRMLDL-SETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSP 443 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~lp~~-~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L 443 (481)
....+++|+.|++++|. +..+|.. +.+.+|++|.+++. .....+..+.++.++..|.+. .+.+..++..+. +++|
T Consensus 181 ~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~-~n~~~~~~~~~~~l~~l 257 (394)
T COG4886 181 LLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNL 257 (394)
T ss_pred hhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCC-cceecchhhhhcccccccccC-Cceeeeccchhcccccc
Confidence 77788888888888884 8888874 56666888888873 356667778888888888866 356666566554 7788
Q ss_pred cEEEeecCCCCCccCC--cccccceEeeeCcCCccCCC
Q 036657 444 ITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 444 ~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP~ 479 (481)
++|+++++ .+..++. ...+++.|+++++.+..+|.
T Consensus 258 ~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 258 ETLDLSNN-QISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ceeccccc-cccccccccccCccCEEeccCccccccch
Confidence 88888884 4777776 24466888888887765543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.5e-10 Score=103.71 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
.+.|.+|||++|.|+.+-++++-+++++.|++|+|. +..+..+..+++|+.|+|++ +.+.++...-..|-+.++|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehh
Confidence 345777777777777777777777777777777773 66666677777777777777 3344433222334455566666
Q ss_pred CCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--ccc---ccceEeeeCcCCccCC
Q 036657 427 GCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISG---NIIELKLWYTAIEEVP 478 (481)
Q Consensus 427 ~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~---~L~~L~L~~~~l~~lP 478 (481)
+ +.+..+...-++-+|..|+++++ +++++.+ .+| .|+.|.|.+|.+..+|
T Consensus 361 ~-N~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 Q-NKIETLSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred h-hhHhhhhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 4 44555443223566666666663 3544443 223 3355666666665554
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=1.9e-09 Score=106.54 Aligned_cols=184 Identities=20% Similarity=0.157 Sum_probs=126.8
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCC-CCCCCC-CC---CceEEEcCCCCc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKM-LPFDFE-PE---NLIELNLPYSKV 360 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-lP~~~~-l~---~L~~L~L~~~~i 360 (481)
...+...++|+.|.+.++.... .......++..+..++ +|++|+++++++.. .+..+. +. +|++|++++|++
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKGC-GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhcC-ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 4456677889999998876310 0000122344566677 99999999998863 333332 33 499999999988
Q ss_pred c-----cccccccCC-CCCcEEeccCCCCCc-----ccCC-CCCCCCCCEEeccCCCCC----ccccccccCCCCCCEEe
Q 036657 361 E-----QIWKGEKKA-FKLKYIDISHSQQLV-----RMLD-LSETPNLERTNLLNCRDL----ACVRSSIENFNNLSMLC 424 (481)
Q Consensus 361 ~-----~lp~~~~~L-~~L~~L~Ls~~~~l~-----~lp~-~~~l~~L~~L~L~~c~~l----~~lp~~i~~L~~L~~L~ 424 (481)
. .+...+..+ ++|+.|++++|. +. .++. +..+++|++|++++|.-. ..++..+..+++|++|+
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence 6 234456677 999999999995 54 2333 667789999999997532 23455566778999999
Q ss_pred eeCCCCCc-----cCCCCC-CCCCCcEEEeecCCCCCc-----cCCc----ccccceEeeeCcCCc
Q 036657 425 FKGCESLR-----SFPRGI-HFVSPITIDFSFCVNLTE-----FPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 425 l~~c~~l~-----~lp~~~-~l~~L~~L~l~~c~~L~~-----lp~~----~~~L~~L~L~~~~l~ 475 (481)
+++| .+. .++..+ .+++|++|++++|. +.. +... ..+|++|++++|.++
T Consensus 200 L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 200 LNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred ccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 9986 343 223333 38899999999976 542 1122 368999999999885
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=4.2e-09 Score=93.82 Aligned_cols=126 Identities=20% Similarity=0.177 Sum_probs=53.6
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccc-cccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccc-
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLE-YLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGE- 367 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~- 367 (481)
.+..++|.|++.+|.+ ..+ +.++ .+. +|+.|++++|.++.++.--.+.+|++|++++|+|+.+..++
T Consensus 16 ~n~~~~~~L~L~~n~I---------~~I-e~L~~~l~-~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQI---------STI-ENLGATLD-KLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-T-T--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHH
T ss_pred cccccccccccccccc---------ccc-cchhhhhc-CCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchH
Confidence 4455789999998873 333 3455 355 89999999999999886555999999999999999997665
Q ss_pred cCCCCCcEEeccCCCCCcccCC---CCCCCCCCEEeccCCCCCccccc----cccCCCCCCEEeeeCC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD---LSETPNLERTNLLNCRDLACVRS----SIENFNNLSMLCFKGC 428 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~c~~l~~lp~----~i~~L~~L~~L~l~~c 428 (481)
..+++|+.|++++|+ +..+.+ ++.+++|+.|++.+++- ...+. -+..+|+|+.||-...
T Consensus 85 ~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 KNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence 469999999999994 777665 67899999999998653 33232 2677889999887653
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.1e-09 Score=105.14 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=138.5
Q ss_pred hhcCCCCcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC
Q 036657 260 LKKNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK 339 (481)
Q Consensus 260 l~~~~~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~ 339 (481)
...+...++++.|+++.......... .....++++|.|+++.|-+. .-..+-.-...|| +|+.|+++.|.+.
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~------nw~~v~~i~eqLp-~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFH------NWFPVLKIAEQLP-SLENLNLSSNRLS 185 (505)
T ss_pred HHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHH------hHHHHHHHHHhcc-cchhccccccccc
Confidence 33445567788888886655333222 56778999999999988741 0112223456778 9999999999887
Q ss_pred CCCCCCC---CCCceEEEcCCCCccccccc----ccCCCCCcEEeccCCCCCc-ccCCCCCCCCCCEEeccCCCCCcccc
Q 036657 340 MLPFDFE---PENLIELNLPYSKVEQIWKG----EKKAFKLKYIDISHSQQLV-RMLDLSETPNLERTNLLNCRDLACVR 411 (481)
Q Consensus 340 ~lP~~~~---l~~L~~L~L~~~~i~~lp~~----~~~L~~L~~L~Ls~~~~l~-~lp~~~~l~~L~~L~L~~c~~l~~lp 411 (481)
..-++.. +.+|..|.|+.|+++ |+. ...+|+|..|+|.+|..+. .--...-+..|++|+|++ +++...+
T Consensus 186 ~~~~s~~~~~l~~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~ 262 (505)
T KOG3207|consen 186 NFISSNTTLLLSHLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFD 262 (505)
T ss_pred CCccccchhhhhhhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Ccccccc
Confidence 6555432 889999999999887 443 4568999999999884221 111144567789999998 5566666
Q ss_pred --ccccCCCCCCEEeeeCCCCCccC--CCC------CCCCCCcEEEeecCCCCCccCC-----cccccceEeeeCcCCc
Q 036657 412 --SSIENFNNLSMLCFKGCESLRSF--PRG------IHFVSPITIDFSFCVNLTEFPQ-----ISGNIIELKLWYTAIE 475 (481)
Q Consensus 412 --~~i~~L~~L~~L~l~~c~~l~~l--p~~------~~l~~L~~L~l~~c~~L~~lp~-----~~~~L~~L~L~~~~l~ 475 (481)
..++.|+.|..|+++.| .+.++ |+. ..+++|+.|+++.++ +.+++. ..++|+.|.+.+|.+.
T Consensus 263 ~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccccccc
Confidence 45888999999999864 45443 332 238899999998844 666664 3566777776666653
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.68 E-value=4.2e-08 Score=97.80 Aligned_cols=133 Identities=14% Similarity=0.231 Sum_probs=88.0
Q ss_pred ccccccccceeeccccCCCCCCCCCCCCceEEEcCCC-CcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEe
Q 036657 322 EYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYS-KVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTN 400 (481)
Q Consensus 322 ~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~-~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~ 400 (481)
..+. +++.|++++|.++++|. -+.+|++|.++++ .++.+|..+ ..+|++|++++|..+..+|. +|+.|.
T Consensus 49 ~~~~-~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-----sLe~L~ 118 (426)
T PRK15386 49 EEAR-ASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-----SVRSLE 118 (426)
T ss_pred HHhc-CCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----ccceEE
Confidence 3444 89999999999999992 3678999999874 677788655 36899999999977877774 466677
Q ss_pred ccC--CCCCccccccccCCCCCCEEeeeCCCCC--ccCCCCCCCCCCcEEEeecCCCCCccCC-cccccceEeeeCc
Q 036657 401 LLN--CRDLACVRSSIENFNNLSMLCFKGCESL--RSFPRGIHFVSPITIDFSFCVNLTEFPQ-ISGNIIELKLWYT 472 (481)
Q Consensus 401 L~~--c~~l~~lp~~i~~L~~L~~L~l~~c~~l--~~lp~~~~l~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~~~ 472 (481)
+.+ |..+..+|++ |+.|.+.+++.. ..+|. .-.++|++|.+++|..+ .+|. .+.+|+.|+++.+
T Consensus 119 L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNG------LTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNI-ILPEKLPESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcch------Hhheecccccccccccccc-ccCCcccEEEecCCCcc-cCcccccccCcEEEeccc
Confidence 654 3345666654 445555432211 11111 11357888888887744 3443 4567777777654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=2.9e-09 Score=99.40 Aligned_cols=128 Identities=14% Similarity=0.166 Sum_probs=93.6
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNC 404 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c 404 (481)
.|..|++++|.++.+..+.. .+.++.|++++|++..+-. +..|++|..||||+|. +.++.. -.++-|.++|.|.+
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh-
Confidence 67788888888888877776 7788888888888877644 7778888888888884 666655 34667778888887
Q ss_pred CCCccccccccCCCCCCEEeeeCCCCCccCCC--CC-CCCCCcEEEeecCCCCCccCCc
Q 036657 405 RDLACVRSSIENFNNLSMLCFKGCESLRSFPR--GI-HFVSPITIDFSFCVNLTEFPQI 460 (481)
Q Consensus 405 ~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~--~~-~l~~L~~L~l~~c~~L~~lp~~ 460 (481)
+.++.+ +.++.|-+|..|++++ +++..+.. .+ ++|.|++|.+.+++ +..+|+.
T Consensus 362 N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vdY 417 (490)
T KOG1259|consen 362 NKIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVDY 417 (490)
T ss_pred hhHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccchH
Confidence 444444 3677788888888886 56665543 33 38888888888865 7777763
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=2.8e-08 Score=101.50 Aligned_cols=151 Identities=26% Similarity=0.259 Sum_probs=128.8
Q ss_pred ccC-CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCC-CCCCceEEEcCCCCcccccccc
Q 036657 290 ANM-SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDF-EPENLIELNLPYSKVEQIWKGE 367 (481)
Q Consensus 290 ~~l-~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~~~i~~lp~~~ 367 (481)
..+ .+|+.|++++|. ...+|..+..++ +|+.|+++.|++..+|... .+.+|..|++++|++..+|..+
T Consensus 136 ~~~~~nL~~L~l~~N~---------i~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~ 205 (394)
T COG4886 136 GLLKSNLKELDLSDNK---------IESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI 205 (394)
T ss_pred ccchhhcccccccccc---------hhhhhhhhhccc-cccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh
Confidence 344 389999999998 567777889999 9999999999999999988 6999999999999999999988
Q ss_pred cCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEE
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITI 446 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L 446 (481)
..+.+|..|.+++|. ....+. +..+.++..|.+.+ ..+..++..++.+++|+.|++++ +.+..++....+.+|+.|
T Consensus 206 ~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L 282 (394)
T COG4886 206 ELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLREL 282 (394)
T ss_pred hhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEE
Confidence 888889999999985 444444 88999999998766 55666688899999999999995 788888884469999999
Q ss_pred EeecCCC
Q 036657 447 DFSFCVN 453 (481)
Q Consensus 447 ~l~~c~~ 453 (481)
++++...
T Consensus 283 ~~s~n~~ 289 (394)
T COG4886 283 DLSGNSL 289 (394)
T ss_pred eccCccc
Confidence 9998543
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.53 E-value=7e-09 Score=100.31 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=56.1
Q ss_pred ccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCC
Q 036657 322 EYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNL 396 (481)
Q Consensus 322 ~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L 396 (481)
..+|.....++++.|.++++|+. |. +++|+.|||++|.|+.+ |..++.|..|-.|-+.++..++.+|. |+++..|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 34555667777777777777776 44 77777777777777766 55677777777776666445777775 6666666
Q ss_pred CEEeccC
Q 036657 397 ERTNLLN 403 (481)
Q Consensus 397 ~~L~L~~ 403 (481)
+.|.+.-
T Consensus 143 qrLllNa 149 (498)
T KOG4237|consen 143 QRLLLNA 149 (498)
T ss_pred HHHhcCh
Confidence 6665543
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.9e-09 Score=100.52 Aligned_cols=177 Identities=18% Similarity=0.132 Sum_probs=128.7
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecC--CccccccccccceeeccccCCCCCCC---CC-CCCceEEEcCCCCcccc
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLD--QGLEYLPEELRYLHWHEYSLKMLPFD---FE-PENLIELNLPYSKVEQI 363 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~--~~l~~l~~~Lr~L~l~~~~l~~lP~~---~~-l~~L~~L~L~~~~i~~l 363 (481)
+++++||...+.++.. ...+ +....+| ++|.|++++|-+...-+. .. +++|+.|+|+.|++...
T Consensus 118 sn~kkL~~IsLdn~~V---------~~~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV---------EDAGIEEYSKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hhHHhhhheeecCccc---------cccchhhhhhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 5678899999987762 2222 3566778 999999999866543322 12 88999999999998876
Q ss_pred ccc--ccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCC
Q 036657 364 WKG--EKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI 438 (481)
Q Consensus 364 p~~--~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~ 438 (481)
+.+ ...+.+|+.|.++.|. +.. +.. +-.+|+|+.|+|.++.....-..+...+..|+.|+|++ +++..++..-
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~ 265 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGY 265 (505)
T ss_pred ccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Cccccccccc
Confidence 665 3468999999999995 542 222 56789999999999754433333455678899999997 5676776432
Q ss_pred ---CCCCCcEEEeecCCCCCcc--CC--------cccccceEeeeCcCCccCCC
Q 036657 439 ---HFVSPITIDFSFCVNLTEF--PQ--------ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 439 ---~l~~L~~L~l~~c~~L~~l--p~--------~~~~L~~L~L~~~~l~~lP~ 479 (481)
.++.|..|+++.|. +.++ |+ .+.+|++|+++.|+|.+.|+
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 49999999998765 4432 32 35688999999999977654
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=6.4e-07 Score=96.48 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=85.3
Q ss_pred CceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 349 NLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 349 ~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
.++.|+|+++.+. .+|..+..|++|+.|+|++|.....+|. ++.+++|+.|+|++|.....+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778888888887 6788888899999999998864457776 8888999999999876666788888999999999998
Q ss_pred CCCCCccCCCCCC--CCCCcEEEeecCCCCCccC
Q 036657 427 GCESLRSFPRGIH--FVSPITIDFSFCVNLTEFP 458 (481)
Q Consensus 427 ~c~~l~~lp~~~~--l~~L~~L~l~~c~~L~~lp 458 (481)
++.-...+|..+. +.++..+++.+++.+-..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 7654457777653 4567788888766555554
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.40 E-value=8.1e-07 Score=88.74 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=87.7
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc-cCCCCCCCCCCCCceEEEcCCC-Cccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY-SLKMLPFDFEPENLIELNLPYS-KVEQIWKG 366 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~-~l~~lP~~~~l~~L~~L~L~~~-~i~~lp~~ 366 (481)
+..+.+++.|++++|. ...+| .+|.+|+.|.+++| .++.+|..+ +.+|++|++++| .+..+|.+
T Consensus 48 ~~~~~~l~~L~Is~c~---------L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCD---------IESLP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCC---------CcccC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc
Confidence 4457999999999886 45666 47778999999875 577888655 679999999998 78788764
Q ss_pred ccCCCCCcEEeccCCC--CCcccCCCCCCCCCCEEeccCCCCC--ccccccccCCCCCCEEeeeCCCCCccCCCCCCCCC
Q 036657 367 EKKAFKLKYIDISHSQ--QLVRMLDLSETPNLERTNLLNCRDL--ACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVS 442 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~--~l~~lp~~~~l~~L~~L~L~~c~~l--~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~ 442 (481)
|+.|+++++. .+..+| ++|+.|.+.+++.. ..+|..+ .++|++|++++|..+ .+|..+ ..+
T Consensus 114 ------Le~L~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L-P~S 178 (426)
T PRK15386 114 ------VRSLEIKGSATDSIKNVP-----NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL-PES 178 (426)
T ss_pred ------cceEEeCCCCCcccccCc-----chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc-ccc
Confidence 5666666542 234444 35667766543211 1112111 157888888887644 344322 357
Q ss_pred CcEEEeecC
Q 036657 443 PITIDFSFC 451 (481)
Q Consensus 443 L~~L~l~~c 451 (481)
|+.|.++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 888887664
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=1e-06 Score=94.96 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=90.2
Q ss_pred cccceeeccccCC-CCCCCCC-CCCceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEecc
Q 036657 327 ELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLL 402 (481)
Q Consensus 327 ~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~ 402 (481)
.++.|+++++.+. .+|..+. +.+|+.|+|++|.+. .+|..+..+++|+.|+|++|.....+|+ ++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778889988886 6777776 899999999999997 7888899999999999999965557887 9999999999999
Q ss_pred CCCCCccccccccCC-CCCCEEeeeCCCCCccCC
Q 036657 403 NCRDLACVRSSIENF-NNLSMLCFKGCESLRSFP 435 (481)
Q Consensus 403 ~c~~l~~lp~~i~~L-~~L~~L~l~~c~~l~~lp 435 (481)
+|.....+|..++.+ .++..+++.++..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 987667899888764 567788888766555544
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=7.2e-07 Score=65.13 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=26.9
Q ss_pred cccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHS 381 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~ 381 (481)
+|++|++++|.++.+|.. |. +++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 455555555555555543 32 4555555555555554433 2444555555555544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=8.2e-07 Score=64.84 Aligned_cols=57 Identities=28% Similarity=0.340 Sum_probs=48.9
Q ss_pred CCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 348 ENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
++|++|++++|+++.+|. .+..+++|++|++++|. +..+|. |.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 378899999999999986 47889999999999884 888876 8999999999999863
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=7.4e-06 Score=55.28 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCC
Q 036657 348 ENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDL 390 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~ 390 (481)
++|++|++++|+|+.+|..+.+|++|++|++++|+ ++.+|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 36778888888888887778888888888888884 6666543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=3e-07 Score=95.41 Aligned_cols=125 Identities=25% Similarity=0.204 Sum_probs=84.1
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCC--CCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLS--ETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~--~l~~L~~L~L~~ 403 (481)
.|...+.+.|.+..+..+.. ++.|+.|+|++|++...- .+..+++|++|||++| .++.+|.++ ++. |+.|++++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecc
Confidence 34444555556665655555 677888888888887764 6778888888888888 488888743 333 88888887
Q ss_pred CCCCccccccccCCCCCCEEeeeCCCCCccCCCC---CCCCCCcEEEeecCCCCCccC
Q 036657 404 CRDLACVRSSIENFNNLSMLCFKGCESLRSFPRG---IHFVSPITIDFSFCVNLTEFP 458 (481)
Q Consensus 404 c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~---~~l~~L~~L~l~~c~~L~~lp 458 (481)
+.+.++. .+.+|++|+.||+++ +-+...... ..+.+|..|+|.|++ +---|
T Consensus 242 -N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP-l~c~p 295 (1096)
T KOG1859|consen 242 -NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP-LCCAP 295 (1096)
T ss_pred -cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc-cccCH
Confidence 5566664 678888888888885 334333321 136677788888855 44334
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=1e-06 Score=90.51 Aligned_cols=172 Identities=21% Similarity=0.204 Sum_probs=92.6
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
+..+++|..|++.+|. ...+...+..++ +|++|++++|.++.+...-.+..|+.|++.+|.|..+. ++.
T Consensus 91 l~~~~~l~~l~l~~n~---------i~~i~~~l~~~~-~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK---------IEKIENLLSSLV-NLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLE 159 (414)
T ss_pred cccccceeeeeccccc---------hhhcccchhhhh-cchheeccccccccccchhhccchhhheeccCcchhcc-CCc
Confidence 4556666666666665 233333355555 66666666666666655544556666666666666553 234
Q ss_pred CCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCC--Cc
Q 036657 369 KAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVS--PI 444 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~--L~ 444 (481)
.++.|+.+++++|. +..++. ...+.+|+.+.+.++ ....+ ..+..+..+..+++.+ +.+..+-....+.. |+
T Consensus 160 ~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n-~i~~i-~~~~~~~~l~~~~l~~-n~i~~~~~l~~~~~~~L~ 235 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGN-SIREI-EGLDLLKKLVLLSLLD-NKISKLEGLNELVMLHLR 235 (414)
T ss_pred cchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCC-chhcc-cchHHHHHHHHhhccc-ccceeccCcccchhHHHH
Confidence 46666666666663 555555 366666666666653 22222 1222333333334432 23333322112333 77
Q ss_pred EEEeecCCCCCccCC---cccccceEeeeCcCCcc
Q 036657 445 TIDFSFCVNLTEFPQ---ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~---~~~~L~~L~L~~~~l~~ 476 (481)
.+.+++.. +...|. ...++..|++..+.+..
T Consensus 236 ~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 236 ELYLSGNR-ISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHhcccCc-cccccccccccccccccchhhccccc
Confidence 78887743 555432 34455677777666643
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=2e-06 Score=88.37 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=26.6
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc-ccCCCCCcEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHS 381 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~ 381 (481)
.|+.|++.+|++..++..-.+..|+.+++.+|.+..+... ...+.+|+.+.+.++
T Consensus 141 ~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 141 LLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred chhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 3555555555555444333345555555555555444332 344455555555544
No 49
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=97.78 E-value=1.1e-05 Score=65.46 Aligned_cols=45 Identities=40% Similarity=0.611 Sum_probs=39.3
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEe
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFY 50 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy 50 (481)
++.+||++|+..|+++|++|..|.||..|+... +..|+.|+||..
T Consensus 42 ~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a----~~~~~~iipv~~ 86 (102)
T PF13676_consen 42 EIERAIERSDCVIVLLSPNYLKSPWCRFELGAA----WKRGKPIIPVRL 86 (102)
T ss_dssp CCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHH----HCTSESEEEEEC
T ss_pred HHHHHHHhCCEEEEEECcccccChHHHHHHHHH----HHCCCEEEEEEE
Confidence 467899999999999999999999999998776 346678999994
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=4.2e-07 Score=94.31 Aligned_cols=175 Identities=18% Similarity=0.165 Sum_probs=113.3
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc----------cCCCCCCCCCCCCceEEEcC
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY----------SLKMLPFDFEPENLIELNLP 356 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~----------~l~~lP~~~~l~~L~~L~L~ 356 (481)
-.+..++.||+|.+.++.+ .. -.++..+-..|..|--++- ....+-.++....|.+.+.+
T Consensus 103 i~ifpF~sLr~LElrg~~L---------~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fs 172 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDL---------ST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFS 172 (1096)
T ss_pred ceeccccceeeEEecCcch---------hh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcc
Confidence 3445678888998888763 11 1222222223333322110 11223333335678888888
Q ss_pred CCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCC
Q 036657 357 YSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPR 436 (481)
Q Consensus 357 ~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~ 436 (481)
+|.+..+-..+.-++.|+.|||++|+ +.+...+..++.|++|+|+. +.+..+|.--..--+|+.|++++ +.++++-.
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g 249 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG 249 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhhhh
Confidence 88888887788888899999999985 66666678888889999987 56777764311112488888886 67877766
Q ss_pred CCCCCCCcEEEeecCCCCCccCC-----cccccceEeeeCcCCc
Q 036657 437 GIHFVSPITIDFSFCVNLTEFPQ-----ISGNIIELKLWYTAIE 475 (481)
Q Consensus 437 ~~~l~~L~~L~l~~c~~L~~lp~-----~~~~L~~L~L~~~~l~ 475 (481)
..++++|+.|+++++ -|..+.+ .+..|+.|+|.||.+-
T Consensus 250 ie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 557889999999873 3555444 2445678888888663
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=1.3e-05 Score=86.64 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=27.2
Q ss_pred cCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCc-cccccccCCCCCCEEeeeC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLA-CVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~-~lp~~i~~L~~L~~L~l~~ 427 (481)
.++++|+.||+|++ +++.+-.++.++|||.|.+.+..-.. .--..+.+|++|+.||++.
T Consensus 170 ~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 170 ASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 34555555555555 34444445555555555554422111 0001344555555555553
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=7.8e-05 Score=50.25 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=26.5
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccc
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIW 364 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp 364 (481)
+|++|++++|.++.+|+.+. +++|++|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 67777777777777777444 778888888888777654
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.38 E-value=4.3e-06 Score=69.90 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=61.4
Q ss_pred cccceeeccccCCCCCCCCC--CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE--PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~--l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~ 403 (481)
+|...++++|.++++|..|. +..+++|+|.+|.+.++|..+..++.||.|+++.|+ +...|. +..+.+|-.|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCC
Confidence 56667778888888887776 557888888888888888888888888888888875 666666 55567777777666
Q ss_pred CCCCcccccc
Q 036657 404 CRDLACVRSS 413 (481)
Q Consensus 404 c~~l~~lp~~ 413 (481)
+...++|-.
T Consensus 133 -na~~eid~d 141 (177)
T KOG4579|consen 133 -NARAEIDVD 141 (177)
T ss_pred -CccccCcHH
Confidence 344455533
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00043 Score=61.95 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=68.0
Q ss_pred cccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc-CCCCCcEEeccCCCCCcccCC---CCCCCCC
Q 036657 321 LEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK-KAFKLKYIDISHSQQLVRMLD---LSETPNL 396 (481)
Q Consensus 321 l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L 396 (481)
++...+..-.+++++|.+..++..-.+..|.+|.+.+|+|+.+-..+. -+++|+.|.|.+| ++.++.+ +..+|.|
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKL 115 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcc
Confidence 333444566677777777666554457788888888888887755543 4667888888877 4666655 5667777
Q ss_pred CEEeccCCCCCccccc----cccCCCCCCEEeeeC
Q 036657 397 ERTNLLNCRDLACVRS----SIENFNNLSMLCFKG 427 (481)
Q Consensus 397 ~~L~L~~c~~l~~lp~----~i~~L~~L~~L~l~~ 427 (481)
++|.+-++. ...... -+..+++|+.||+.+
T Consensus 116 ~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 887777643 222211 256677777777765
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.27 E-value=9.6e-05 Score=79.96 Aligned_cols=111 Identities=18% Similarity=0.121 Sum_probs=76.9
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~ 362 (481)
+.......++.||.|.+.+-.+. ...+..-..++| +|+.||+++++++.+ ..++ +++|++|.+++-.++.
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~-------~~dF~~lc~sFp-NL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFD-------NDDFSQLCASFP-NLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred HHHHHhhhCcccceEEecCceec-------chhHHHHhhccC-ccceeecCCCCccCc-HHHhccccHHHHhccCCCCCc
Confidence 34455566899999999876541 223444556777 899999999988888 3343 8999999998877764
Q ss_pred c--cccccCCCCCcEEeccCCCCCccc--CC-----CCCCCCCCEEeccC
Q 036657 363 I--WKGEKKAFKLKYIDISHSQQLVRM--LD-----LSETPNLERTNLLN 403 (481)
Q Consensus 363 l--p~~~~~L~~L~~L~Ls~~~~l~~l--p~-----~~~l~~L~~L~L~~ 403 (481)
- ...+.+|++|++||+|..++.... .. -..+|+|+.|+.++
T Consensus 210 ~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 210 YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 2 345778999999999887533222 11 23477788887776
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=1.4e-05 Score=75.13 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=90.5
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc-CCCCCCC--CC-CCCceEEEcCCCCccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS-LKMLPFD--FE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~lP~~--~~-l~~L~~L~L~~~~i~~ 362 (481)
..++.+.+|+-|.+.|+.. ...+-..+..=. +|+.|+++.+. +++.... +. +..|.+|+|++|.+..
T Consensus 204 ~iLs~C~kLk~lSlEg~~L--------dD~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRL--------DDPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred HHHHHHHhhhhcccccccc--------CcHHHHHHhccc-cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc
Confidence 4566777888888887663 111222222222 67777777652 3221111 12 6678888888875542
Q ss_pred --ccccc-cCCCCCcEEeccCCCCCcccCC----CCCCCCCCEEeccCCCCCcc-ccccccCCCCCCEEeeeCCCCCccC
Q 036657 363 --IWKGE-KKAFKLKYIDISHSQQLVRMLD----LSETPNLERTNLLNCRDLAC-VRSSIENFNNLSMLCFKGCESLRSF 434 (481)
Q Consensus 363 --lp~~~-~~L~~L~~L~Ls~~~~l~~lp~----~~~l~~L~~L~L~~c~~l~~-lp~~i~~L~~L~~L~l~~c~~l~~l 434 (481)
+--.+ .--++|+.|+++++...-.... ....|+|.+|+|++|..+.. .-..+.+++.|++|.++.|..+ .
T Consensus 275 ~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~ 352 (419)
T KOG2120|consen 275 EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--I 352 (419)
T ss_pred hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--C
Confidence 10011 1135677788888742211112 35678888888888776653 2234677888888888888655 2
Q ss_pred CCCC----CCCCCcEEEeecCC
Q 036657 435 PRGI----HFVSPITIDFSFCV 452 (481)
Q Consensus 435 p~~~----~l~~L~~L~l~~c~ 452 (481)
|..+ ..++|.+|++-||-
T Consensus 353 p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 353 PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hHHeeeeccCcceEEEEecccc
Confidence 3322 27888888888765
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.0011 Score=59.44 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred ccceeeccccCCCCCCC-CCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-C-CCCCCCCEEeccCC
Q 036657 328 LRYLHWHEYSLKMLPFD-FEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-L-SETPNLERTNLLNC 404 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~-~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~-~~l~~L~~L~L~~c 404 (481)
=+.+++.++.+..+-.. ..+.+...+||++|.+..++ .+..++.|.+|.+++|. +..+.. + ..+++|..|.+.+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~Ltn- 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTN- 97 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecC-
Confidence 45566666654433321 12667788899998887764 36678888999998884 777754 4 4567789999988
Q ss_pred CCCccccc--cccCCCCCCEEeeeCCCCCccCCCC----C-CCCCCcEEEeec
Q 036657 405 RDLACVRS--SIENFNNLSMLCFKGCESLRSFPRG----I-HFVSPITIDFSF 450 (481)
Q Consensus 405 ~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~----~-~l~~L~~L~l~~ 450 (481)
+++.++-. .+..+++|++|.+-+ +....-+.- + .+++|++|+.++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhhhhcchhccCCccceeeecC-CchhcccCceeEEEEecCcceEeehhh
Confidence 45555432 255677888888776 344433321 1 378888888876
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.11 E-value=0.00012 Score=70.56 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=122.2
Q ss_pred ccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCc----cccccccccceeeccccCCCCC--------------CC
Q 036657 283 HLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQG----LEYLPEELRYLHWHEYSLKMLP--------------FD 344 (481)
Q Consensus 283 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~----l~~l~~~Lr~L~l~~~~l~~lP--------------~~ 344 (481)
.+..+++.++++|+.|++++|-+ ....+.. +.+.. .|..|.+.+|.+...- ..
T Consensus 82 ~~l~~aL~~~~~L~~ldLSDNA~--------G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk 152 (382)
T KOG1909|consen 82 KMLSKALLGCPKLQKLDLSDNAF--------GPKGIRGLEELLSSCT-DLEELYLNNCGLGPEAGGRLGRALFELAVNKK 152 (382)
T ss_pred HHHHHHHhcCCceeEeecccccc--------CccchHHHHHHHHhcc-CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhc
Confidence 34467778888999999999986 2233332 33334 7888999988764211 11
Q ss_pred C-CCCCceEEEcCCCCcccccc-----cccCCCCCcEEeccCCCCCcc-----cCC-CCCCCCCCEEeccCCCCCc----
Q 036657 345 F-EPENLIELNLPYSKVEQIWK-----GEKKAFKLKYIDISHSQQLVR-----MLD-LSETPNLERTNLLNCRDLA---- 408 (481)
Q Consensus 345 ~-~l~~L~~L~L~~~~i~~lp~-----~~~~L~~L~~L~Ls~~~~l~~-----lp~-~~~l~~L~~L~L~~c~~l~---- 408 (481)
. ...+|+++...+|++..-+. .++..+.|+.+.++.|. +.. +-. +..+++|+.|+|.+++.-.
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 1 26789999999998875443 47778899999998874 221 111 6789999999999865332
Q ss_pred cccccccCCCCCCEEeeeCCCCCcc-----CCCCC--CCCCCcEEEeecCCCCCc-----c--C-CcccccceEeeeCcC
Q 036657 409 CVRSSIENFNNLSMLCFKGCESLRS-----FPRGI--HFVSPITIDFSFCVNLTE-----F--P-QISGNIIELKLWYTA 473 (481)
Q Consensus 409 ~lp~~i~~L~~L~~L~l~~c~~l~~-----lp~~~--~l~~L~~L~l~~c~~L~~-----l--p-~~~~~L~~L~L~~~~ 473 (481)
.+...+..+++|+.|++++|. ++. +-..+ ..++|+.|.+.+|. +.. + + ..-+.|..|+|++|.
T Consensus 232 ~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 233456778899999999984 322 11112 27899999999976 332 0 0 024567899999999
Q ss_pred Cc
Q 036657 474 IE 475 (481)
Q Consensus 474 l~ 475 (481)
+.
T Consensus 310 l~ 311 (382)
T KOG1909|consen 310 LG 311 (382)
T ss_pred cc
Confidence 83
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.99 E-value=3.3e-05 Score=64.72 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=78.8
Q ss_pred cccceeeccccCCCCCCCC----CCCCceEEEcCCCCccccccccc-CCCCCcEEeccCCCCCcccCC-CCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKMLPFDF----EPENLIELNLPYSKVEQIWKGEK-KAFKLKYIDISHSQQLVRMLD-LSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~----~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~ 400 (481)
.+..++++.|++-.++... ...+|...+|++|.+..+|+.+. .++.++.|++++|. +.++|. +..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 3445555566555554432 25678888999999988887754 45688889999884 888887 88889999999
Q ss_pred ccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCC
Q 036657 401 LLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRG 437 (481)
Q Consensus 401 L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~ 437 (481)
++. +.+...|.-+..|.+|-.|+..+ +....+|-.
T Consensus 107 l~~-N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 107 LRF-NPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred ccc-CccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 988 56777787777788888888775 456566643
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=7.6e-05 Score=70.36 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=98.5
Q ss_pred ccccceeeccccCCC--CCCCCC-CCCceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCcccCC---CCCCCCCCE
Q 036657 326 EELRYLHWHEYSLKM--LPFDFE-PENLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLVRMLD---LSETPNLER 398 (481)
Q Consensus 326 ~~Lr~L~l~~~~l~~--lP~~~~-l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~ 398 (481)
..|++|+++...++. +-.-.. ..+|+-|.|.++++. .+-..+.+=.+|+.|+++.|..+++..- +.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 368899998876542 211112 678888888888776 4555677788999999999987776543 788999999
Q ss_pred EeccCCCCCccccc-cccC-CCCCCEEeeeCCCCCccCCC---CC-CCCCCcEEEeecCCCCCc--cCC--cccccceEe
Q 036657 399 TNLLNCRDLACVRS-SIEN-FNNLSMLCFKGCESLRSFPR---GI-HFVSPITIDFSFCVNLTE--FPQ--ISGNIIELK 468 (481)
Q Consensus 399 L~L~~c~~l~~lp~-~i~~-L~~L~~L~l~~c~~l~~lp~---~~-~l~~L~~L~l~~c~~L~~--lp~--~~~~L~~L~ 468 (481)
|+++.|....+.-. .+.+ -++|..|+++||..--.... .. ..++|.+|+|++|..++. +-. -+..|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999864433211 1122 15788899998743221111 11 388999999999987765 111 245678888
Q ss_pred eeCc
Q 036657 469 LWYT 472 (481)
Q Consensus 469 L~~~ 472 (481)
++.|
T Consensus 345 lsRC 348 (419)
T KOG2120|consen 345 LSRC 348 (419)
T ss_pred hhhh
Confidence 8843
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.49 E-value=0.0016 Score=60.60 Aligned_cols=101 Identities=24% Similarity=0.200 Sum_probs=57.0
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCC--Ccc-cccccccCCCCCcEEeccCCCCCc---ccCCCCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYS--KVE-QIWKGEKKAFKLKYIDISHSQQLV---RMLDLSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~--~i~-~lp~~~~~L~~L~~L~Ls~~~~l~---~lp~~~~l~~L~~L~ 400 (481)
.|..|+..+..++++-..-.+.+|+.|.++.| ++. .++--...+++|++|++++|+ ++ .++.+..+.||..|+
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhh
Confidence 44444444444433322223567777777777 333 344444556788888888774 33 334466677777778
Q ss_pred ccCCCCCcc--cc-ccccCCCCCCEEeeeCC
Q 036657 401 LLNCRDLAC--VR-SSIENFNNLSMLCFKGC 428 (481)
Q Consensus 401 L~~c~~l~~--lp-~~i~~L~~L~~L~l~~c 428 (481)
+.+|..... -- .-+.-+++|++|+-.++
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhcccccccc
Confidence 777754331 11 12445677777766554
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.17 E-value=0.001 Score=64.29 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=35.1
Q ss_pred CCCceEEEcCCCCcc-----cccccccCCCCCcEEeccCCCCCcccC-----C--CCCCCCCCEEeccCCCCCcc----c
Q 036657 347 PENLIELNLPYSKVE-----QIWKGEKKAFKLKYIDISHSQQLVRML-----D--LSETPNLERTNLLNCRDLAC----V 410 (481)
Q Consensus 347 l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~~lp-----~--~~~l~~L~~L~L~~c~~l~~----l 410 (481)
+++|++|||++|-++ .+-+.+..+++|+.|++++| .+..-. + -...|+|++|.+.+|..-.. +
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence 344455555544333 12233445555555555555 232211 1 12345555555555432111 1
Q ss_pred cccccCCCCCCEEeeeCC
Q 036657 411 RSSIENFNNLSMLCFKGC 428 (481)
Q Consensus 411 p~~i~~L~~L~~L~l~~c 428 (481)
...+...+.|..|++++|
T Consensus 291 a~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 291 AACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHhcchhhHHhcCCcc
Confidence 122334455555555553
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.87 E-value=0.044 Score=45.95 Aligned_cols=102 Identities=22% Similarity=0.315 Sum_probs=38.6
Q ss_pred ChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcc
Q 036657 285 NPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVE 361 (481)
Q Consensus 285 ~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~ 361 (481)
...+|.++++|+.+.+... ...++. .+.... +|+.+.+.++ +..++.. |. ..+|+.+.+.. .+.
T Consensus 4 ~~~~F~~~~~l~~i~~~~~----------~~~I~~~~F~~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPNT----------IKKIGENAFSNCT-SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp -TTTTTT-TT--EEEETST------------EE-TTTTTT-T-T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred CHHHHhCCCCCCEEEECCC----------eeEeChhhccccc-cccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 4556777777777776532 123332 233333 4555555443 4444443 22 33455555543 333
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEecc
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLL 402 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~ 402 (481)
.++.. +..+++|+.+++..+ +..++. +.+. +|+.+.+.
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 33332 333555555555432 344443 4443 44444443
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.0036 Score=59.38 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=25.0
Q ss_pred cccceeeccccCCCCCCCC----CCCCceEEEcCCCCcccccccc-cCCCCCcEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFDF----EPENLIELNLPYSKVEQIWKGE-KKAFKLKYIDISHS 381 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~----~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~Ls~~ 381 (481)
.++.|++.+|.+..-..-+ +++.|++|+|++|.+...-+.. -.+.+|+.|-|.++
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 5555666555544322221 1445555555555443221111 23445555555444
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.0086 Score=56.87 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=33.6
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCcccccc---ccccceeeccccC--CCCCCCCC-CCCceEEEcCCCC
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLP---EELRYLHWHEYSL--KMLPFDFE-PENLIELNLPYSK 359 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~---~~Lr~L~l~~~~l--~~lP~~~~-l~~L~~L~L~~~~ 359 (481)
...+.+|+.|++|.++.|+. ...++.+| .+|+.|-+.|+.+ +..-+... ++.+++|+|+.|+
T Consensus 90 ~~ile~lP~l~~LNls~N~L------------~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSL------------SSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HHHHhcCccceEeeccCCcC------------CCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 34567788888888887763 22233332 3677777776643 22222222 4455555555553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.30 E-value=0.0092 Score=55.66 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=66.2
Q ss_pred cccceeeccccCCC--CCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCC--CCCcccCC-CCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKM--LPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHS--QQLVRMLD-LSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~--lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~--~~l~~lp~-~~~l~~L~~L~ 400 (481)
..+.+.+.++.... +..... ..+|+.|++.+..++.+ .++..|++|+.|+++.| +-...++- ...+|+|++|+
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 44455555443222 333222 56677777766665544 23445778888888877 33333333 44558888888
Q ss_pred ccCCCCCccccc---cccCCCCCCEEeeeCCCCCccCCCC----CC-CCCCcEEEeecC
Q 036657 401 LLNCRDLACVRS---SIENFNNLSMLCFKGCESLRSFPRG----IH-FVSPITIDFSFC 451 (481)
Q Consensus 401 L~~c~~l~~lp~---~i~~L~~L~~L~l~~c~~l~~lp~~----~~-l~~L~~L~l~~c 451 (481)
++++. +.. ++ .+..+.+|..|++.+|.... +-.. +. +++|..|+-..+
T Consensus 98 ls~Nk-i~~-lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 98 LSGNK-IKD-LSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ecCCc-ccc-ccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 88743 221 22 24556667777777764433 2221 11 666666655443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.001 Score=62.37 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=62.0
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc--cccC
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK--GEKK 369 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~--~~~~ 369 (481)
+.+.+.|.+.|+.+. .+ .....+| .|.+|.|+-|.+++|.+.-.+.+|++|.|+.|.|..+-+ -+++
T Consensus 18 l~~vkKLNcwg~~L~---------DI-sic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD---------DI-SICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCcc---------HH-HHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 456667777776631 11 1224455 778888888888777666567788888888887776533 3677
Q ss_pred CCCCcEEeccCCCCCcccCC------CCCCCCCCEEe
Q 036657 370 AFKLKYIDISHSQQLVRMLD------LSETPNLERTN 400 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~------~~~l~~L~~L~ 400 (481)
|++||.|-|..|.....-+. +.-||||+.|+
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777777777654444332 34456666654
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.13 E-value=0.012 Score=33.08 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=9.8
Q ss_pred ceEEEcCCCCccccccccc
Q 036657 350 LIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 350 L~~L~L~~~~i~~lp~~~~ 368 (481)
|++|++++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554433
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.00099 Score=62.47 Aligned_cols=80 Identities=19% Similarity=0.085 Sum_probs=44.4
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCC---CCCCceEEEcCCCCcc-c
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDF---EPENLIELNLPYSKVE-Q 362 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~---~l~~L~~L~L~~~~i~-~ 362 (481)
....+|+.|.+|.|+-|.+ ..+ ..+.... +|+.|+|..|.+.++-.-+ ++++|++|.|..|.-. .
T Consensus 35 sic~kMp~lEVLsLSvNkI---------ssL-~pl~rCt-rLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKI---------SSL-APLQRCT-RLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHHhcccceeEEeecccc---------ccc-hhHHHHH-HHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 3456677777777776652 112 1234444 6777777777666655442 2666777777665322 1
Q ss_pred cccc-----ccCCCCCcEEe
Q 036657 363 IWKG-----EKKAFKLKYID 377 (481)
Q Consensus 363 lp~~-----~~~L~~L~~L~ 377 (481)
-+.. +.-|++|+.||
T Consensus 104 ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 104 AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cchhHHHHHHHHcccchhcc
Confidence 1111 34466666664
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.50 E-value=0.015 Score=32.67 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=12.1
Q ss_pred ccceEeeeCcCCccCCCCC
Q 036657 463 NIIELKLWYTAIEEVPSSI 481 (481)
Q Consensus 463 ~L~~L~L~~~~l~~lP~si 481 (481)
+|++|+|++|+|+.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 3566677766676666653
No 71
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.21 E-value=0.31 Score=55.40 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=83.0
Q ss_pred HHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCCchhhHHHHHhc-cccCchhhHHHhhhhccCCCCCCHHH
Q 036657 112 LSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKIS-YDELNSEVKEIFIDIACFFKGEDIDF 190 (481)
Q Consensus 112 i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~~~~i~~~L~lS-Yd~L~~~~K~cFl~~a~Fp~~~~~~~ 190 (481)
...++.+.|+|.|+++..++..+.+.... -......+...+...+...+.-. ++.||++.+..++..|+++ .+..+-
T Consensus 207 ~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l 284 (903)
T PRK04841 207 ESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDAL 284 (903)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHH
Confidence 45789999999999999998777543210 01111222222234566655444 8899999999999999987 466554
Q ss_pred HHHHhcCCCcccccHHHHhhCcceee-cC-C-CceehhHHHHHHHHHHhhc
Q 036657 191 MTRIHDDPMSIHDGLNILVSKSLITI-SD-E-NELQMHDLLQEMGQTIVRQ 238 (481)
Q Consensus 191 l~~~~~~~~~~~~~~~~L~~r~li~~-~~-~-~~~~mHdll~d~~~~i~~~ 238 (481)
+..+.. .-.+...+++|.+.+++.. .+ + ..++.|++++++.+.-...
T Consensus 285 ~~~l~~-~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 285 IVRVTG-EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred HHHHcC-CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence 443332 2245677999999999754 22 2 3689999999998876543
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.58 E-value=0.037 Score=28.89 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=5.8
Q ss_pred ccceEeeeCcCCccCC
Q 036657 463 NIIELKLWYTAIEEVP 478 (481)
Q Consensus 463 ~L~~L~L~~~~l~~lP 478 (481)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444555555554444
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.36 E-value=0.28 Score=40.93 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=36.8
Q ss_pred CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCE
Q 036657 347 PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSM 422 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~ 422 (481)
..+|+.+.+.. .+..++.. +..+.+|+.+.+..+ +..+++ +.++++|+.+.+.+ .+..++.. +..+++|+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccc
Confidence 33555555553 34444433 445555666666542 555554 55555566666643 33333332 334556666
Q ss_pred EeeeCCCCCccCCCCC-C-CCCCcEEEee
Q 036657 423 LCFKGCESLRSFPRGI-H-FVSPITIDFS 449 (481)
Q Consensus 423 L~l~~c~~l~~lp~~~-~-l~~L~~L~l~ 449 (481)
+.+.. ++..++... . . +|+.+.+.
T Consensus 86 i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 86 IDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccCc--cccEEchhhhcCC-CceEEEEC
Confidence 66542 344444322 1 3 55555543
No 74
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=93.34 E-value=0.062 Score=29.24 Aligned_cols=20 Identities=65% Similarity=1.313 Sum_probs=17.7
Q ss_pred CceEEEcCCCCccccccccc
Q 036657 349 NLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 349 ~L~~L~L~~~~i~~lp~~~~ 368 (481)
+|++|+|++++++.||++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998763
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.33 E-value=0.0039 Score=57.11 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=76.0
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~ 365 (481)
..+...+...+|+++.|. ...+...+.-+. .+..|+++.+.+..+|.++. +..++.+++..|+.+++|.
T Consensus 36 ~ei~~~kr~tvld~~s~r---------~vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~ 105 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNR---------LVNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK 105 (326)
T ss_pred hhhhccceeeeehhhhhH---------HHhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc
Confidence 344556778889998877 566777777777 88889999999999999988 8899999999999999999
Q ss_pred cccCCCCCcEEeccCCCCCccc
Q 036657 366 GEKKAFKLKYIDISHSQQLVRM 387 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~l 387 (481)
+.+.+++++++++.++.....+
T Consensus 106 s~~k~~~~k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFFRKL 127 (326)
T ss_pred cccccCCcchhhhccCcchHHH
Confidence 9999999999999887644333
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.44 E-value=0.076 Score=27.69 Aligned_cols=8 Identities=25% Similarity=0.642 Sum_probs=2.9
Q ss_pred cEEeccCC
Q 036657 374 KYIDISHS 381 (481)
Q Consensus 374 ~~L~Ls~~ 381 (481)
+.|++++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=0.067 Score=48.20 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccC--CC-CCCCCCCEEeccCCCCCcccc-ccccCCCCCCE
Q 036657 348 ENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRML--DL-SETPNLERTNLLNCRDLACVR-SSIENFNNLSM 422 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp--~~-~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~ 422 (481)
..++.+|-+++.|... -+.+.+++.++.|.+.+|.++...- .+ +-.++|+.|++++|+.+++-- ..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3467777777766532 2335667777777888776554321 12 246788888888888776532 23667778888
Q ss_pred EeeeCCC
Q 036657 423 LCFKGCE 429 (481)
Q Consensus 423 L~l~~c~ 429 (481)
|.+.+.+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8777643
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.20 E-value=0.25 Score=28.75 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=10.6
Q ss_pred cccceEeeeCcCCccCCC
Q 036657 462 GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 462 ~~L~~L~L~~~~l~~lP~ 479 (481)
.+|+.|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345566666666666654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.20 E-value=0.25 Score=28.75 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=10.6
Q ss_pred cccceEeeeCcCCccCCC
Q 036657 462 GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 462 ~~L~~L~L~~~~l~~lP~ 479 (481)
.+|+.|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345566666666666654
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.22 E-value=0.48 Score=44.80 Aligned_cols=185 Identities=14% Similarity=0.080 Sum_probs=112.0
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCcccccc---ccccceeeccccCCCCCCC---------------C
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLP---EELRYLHWHEYSLKMLPFD---------------F 345 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~---~~Lr~L~l~~~~l~~lP~~---------------~ 345 (481)
+..+++.+|+.|+..++++|.+ ....|..++.+. ..|..|.+++|.+.-+-.. -
T Consensus 83 ~Ll~aLlkcp~l~~v~LSDNAf--------g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa 154 (388)
T COG5238 83 MLLKALLKCPRLQKVDLSDNAF--------GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAA 154 (388)
T ss_pred HHHHHHhcCCcceeeecccccc--------CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhc
Confidence 4456778888999999988886 444554433222 2678888888765432211 1
Q ss_pred CCCCceEEEcCCCCccccccc-----ccCCCCCcEEeccCCCCCccc--C-----CCCCCCCCCEEeccCCCCCcc----
Q 036657 346 EPENLIELNLPYSKVEQIWKG-----EKKAFKLKYIDISHSQQLVRM--L-----DLSETPNLERTNLLNCRDLAC---- 409 (481)
Q Consensus 346 ~l~~L~~L~L~~~~i~~lp~~-----~~~L~~L~~L~Ls~~~~l~~l--p-----~~~~l~~L~~L~L~~c~~l~~---- 409 (481)
.-+.|++.....|++..-|.. +..-.+|+.+.+..|. ++.- . .+..+.+|+.|+|.+++....
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 245788888888887754432 4444688899888874 4321 0 145678999999998653211
Q ss_pred ccccccCCCCCCEEeeeCCCCCc----cCCCCC---CCCCCcEEEeecCCCCC------ccCC----cccccceEeeeCc
Q 036657 410 VRSSIENFNNLSMLCFKGCESLR----SFPRGI---HFVSPITIDFSFCVNLT------EFPQ----ISGNIIELKLWYT 472 (481)
Q Consensus 410 lp~~i~~L~~L~~L~l~~c~~l~----~lp~~~---~l~~L~~L~l~~c~~L~------~lp~----~~~~L~~L~L~~~ 472 (481)
+...+...+.|+.|++.+|---. ++-..+ ..++|..|...+...=. .+|. ..+-|..|.+.||
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 22335566778999999883211 111112 27888888877643211 1222 1334456777788
Q ss_pred CCccC
Q 036657 473 AIEEV 477 (481)
Q Consensus 473 ~l~~l 477 (481)
+|+++
T Consensus 314 r~~E~ 318 (388)
T COG5238 314 RIKEL 318 (388)
T ss_pred cchhH
Confidence 88664
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.96 E-value=0.091 Score=47.36 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=56.1
Q ss_pred CCCcEEeccCCCCCcccC--CCCCCCCCCEEeccCCCCCcccc-cccc-CCCCCCEEeeeCCCCCccCCCCC--CCCCCc
Q 036657 371 FKLKYIDISHSQQLVRML--DLSETPNLERTNLLNCRDLACVR-SSIE-NFNNLSMLCFKGCESLRSFPRGI--HFVSPI 444 (481)
Q Consensus 371 ~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~L~~c~~l~~lp-~~i~-~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~ 444 (481)
..++.+|.+++. +.... .+..++.++.|.+.+|..+...- +-++ -.++|+.|++++|+.+++-.-.. .+++|+
T Consensus 101 ~~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 346677888773 43332 37788888999999998665321 1122 35789999999999887643221 488999
Q ss_pred EEEeecCCCC
Q 036657 445 TIDFSFCVNL 454 (481)
Q Consensus 445 ~L~l~~c~~L 454 (481)
.|.+.+.+..
T Consensus 180 ~L~l~~l~~v 189 (221)
T KOG3864|consen 180 RLHLYDLPYV 189 (221)
T ss_pred HHHhcCchhh
Confidence 9998875543
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.69 E-value=0.52 Score=27.33 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=10.5
Q ss_pred CCceEEEcCCCCccccccc
Q 036657 348 ENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~~ 366 (481)
.+|++|+|.+|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.69 E-value=0.52 Score=27.33 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=10.5
Q ss_pred CCceEEEcCCCCccccccc
Q 036657 348 ENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~~ 366 (481)
.+|++|+|.+|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
No 84
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.18 E-value=1.7 Score=41.34 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=92.5
Q ss_pred cccceeeccccCCC-----CCCCCC-CCCceEEEcCCCCcc----cccc-------cccCCCCCcEEeccCCCCCcccCC
Q 036657 327 ELRYLHWHEYSLKM-----LPFDFE-PENLIELNLPYSKVE----QIWK-------GEKKAFKLKYIDISHSQQLVRMLD 389 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~-----lP~~~~-l~~L~~L~L~~~~i~----~lp~-------~~~~L~~L~~L~Ls~~~~l~~lp~ 389 (481)
.+..++++||.+.. +...+. -++|++.+++.-... ++|. .+-++++|+..+||.|..-...|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 77888899887643 222222 578888888754221 3333 355789999999999875555554
Q ss_pred -----CCCCCCCCEEeccCCCCCcccc--------------ccccCCCCCCEEeeeCCCCCccCCCCC-----C-CCCCc
Q 036657 390 -----LSETPNLERTNLLNCRDLACVR--------------SSIENFNNLSMLCFKGCESLRSFPRGI-----H-FVSPI 444 (481)
Q Consensus 390 -----~~~l~~L~~L~L~~c~~l~~lp--------------~~i~~L~~L~~L~l~~c~~l~~lp~~~-----~-l~~L~ 444 (481)
+++.++|.+|.+.+|. +..+. ....+-|.|+...... +.+...|... . -..|+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHENLK 188 (388)
T ss_pred HHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhcCce
Confidence 7888999999999864 32221 1123456788776653 5666655421 1 24788
Q ss_pred EEEeecCCCCCccCC-----------cccccceEeeeCcCCcc
Q 036657 445 TIDFSFCVNLTEFPQ-----------ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~-----------~~~~L~~L~L~~~~l~~ 476 (481)
++.+..+. ++ |+ ...+|+.|+|..|-++.
T Consensus 189 ~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 189 EVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred eEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 88886632 33 22 24577899999887764
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.14 E-value=0.3 Score=50.79 Aligned_cols=105 Identities=30% Similarity=0.323 Sum_probs=67.5
Q ss_pred cccceeecccc-CCC--C-CCCCCCCCceEEEcCCC--Ccccc----cccccCCCCCcEEeccCCCCCcccC--CC-CCC
Q 036657 327 ELRYLHWHEYS-LKM--L-PFDFEPENLIELNLPYS--KVEQI----WKGEKKAFKLKYIDISHSQQLVRML--DL-SET 393 (481)
Q Consensus 327 ~Lr~L~l~~~~-l~~--l-P~~~~l~~L~~L~L~~~--~i~~l----p~~~~~L~~L~~L~Ls~~~~l~~lp--~~-~~l 393 (481)
.|+.|.+.++. +.. + |......+|++|+++++ .+... +.-...+++|+.|+++++..+...- .+ ..+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 77777777663 332 2 22234789999999873 21111 1234557889999999886433322 12 247
Q ss_pred CCCCEEeccCCCCCcc--ccccccCCCCCCEEeeeCCCCC
Q 036657 394 PNLERTNLLNCRDLAC--VRSSIENFNNLSMLCFKGCESL 431 (481)
Q Consensus 394 ~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~l~~c~~l 431 (481)
++|++|.+.+|..+.. +-.-...+++|++|++++|..+
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 8999999888875422 2233456788999999998876
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.37 E-value=0.074 Score=52.96 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCceEEEcCCCC---cccccccccCCCCCcEEeccCCCCCcccCC--C-CCCCCCCEEeccCCCCCccccc--cccCCCC
Q 036657 348 ENLIELNLPYSK---VEQIWKGEKKAFKLKYIDISHSQQLVRMLD--L-SETPNLERTNLLNCRDLACVRS--SIENFNN 419 (481)
Q Consensus 348 ~~L~~L~L~~~~---i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~-~~l~~L~~L~L~~c~~l~~lp~--~i~~L~~ 419 (481)
..|+.|.++++. ...+-....+.+++.+|++.+|.+++.-.- + ..+++|++|++..|.++....- -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357788888773 233444466788888999998875554321 2 3577889999999887765421 1345788
Q ss_pred CCEEeeeCCCCCccC--CCCC-CCCCCcEEEeecCCCCC
Q 036657 420 LSMLCFKGCESLRSF--PRGI-HFVSPITIDFSFCVNLT 455 (481)
Q Consensus 420 L~~L~l~~c~~l~~l--p~~~-~l~~L~~L~l~~c~~L~ 455 (481)
|.+|+++.|+.+..= .... +.+.|+.+.+.||..++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~ 256 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE 256 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence 999999999877661 1111 36668888788887543
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.48 E-value=0.67 Score=46.43 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=52.2
Q ss_pred CCCceEEEcCCC-Ccc--cccccccCCCCCcEEeccCCCCCcccCC--C-CCCCCCCEEeccCCCCCcc--ccccccCCC
Q 036657 347 PENLIELNLPYS-KVE--QIWKGEKKAFKLKYIDISHSQQLVRMLD--L-SETPNLERTNLLNCRDLAC--VRSSIENFN 418 (481)
Q Consensus 347 l~~L~~L~L~~~-~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~-~~l~~L~~L~L~~c~~l~~--lp~~i~~L~ 418 (481)
...|++|+.+++ .+. .+|.-..+..+|+.|.+++|+.+...-- + .+.+.|+.+++.+|..... +-+--.+.+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 445566666554 222 1233244556666666666654433221 1 2445566666665543221 111123445
Q ss_pred CCCEEeeeCCCCCccC-----CCCC-CCCCCcEEEeecCCCCC
Q 036657 419 NLSMLCFKGCESLRSF-----PRGI-HFVSPITIDFSFCVNLT 455 (481)
Q Consensus 419 ~L~~L~l~~c~~l~~l-----p~~~-~l~~L~~L~l~~c~~L~ 455 (481)
.|+.|.++.|..++.. .... ++..|+.+.+++|+.+.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 6666666655544432 1111 25556666666666543
No 88
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.18 E-value=0.44 Score=49.55 Aligned_cols=108 Identities=22% Similarity=0.188 Sum_probs=71.5
Q ss_pred CCCceEEEcCCC-Cccc--ccccccCCCCCcEEeccC-CCCCcccCC-----CCCCCCCCEEeccCCCCCcccc-cccc-
Q 036657 347 PENLIELNLPYS-KVEQ--IWKGEKKAFKLKYIDISH-SQQLVRMLD-----LSETPNLERTNLLNCRDLACVR-SSIE- 415 (481)
Q Consensus 347 l~~L~~L~L~~~-~i~~--lp~~~~~L~~L~~L~Ls~-~~~l~~lp~-----~~~l~~L~~L~L~~c~~l~~lp-~~i~- 415 (481)
..+|+.|.+.++ .+.. +-......++|+.|++++ +......+. ...+++|+.|++++|..+...- ..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 467788887766 4444 334467789999999987 333333331 4556889999999987543221 1222
Q ss_pred CCCCCCEEeeeCCCCCccCCC--CC-CCCCCcEEEeecCCCC
Q 036657 416 NFNNLSMLCFKGCESLRSFPR--GI-HFVSPITIDFSFCVNL 454 (481)
Q Consensus 416 ~L~~L~~L~l~~c~~l~~lp~--~~-~l~~L~~L~l~~c~~L 454 (481)
.+++|+.|.+.+|..++...- .. .+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 378999999888876433221 11 3788999999999876
No 89
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=77.02 E-value=3.1 Score=35.06 Aligned_cols=44 Identities=30% Similarity=0.528 Sum_probs=28.5
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEE
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVF 49 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvf 49 (481)
.|-++|+.|.+.||+.|++=+.|+|.--|+..-++ .|..|+-|-
T Consensus 63 ~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 63 KIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp HHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred HHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 36678999999999999999999999999886554 555666664
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.99 E-value=0.072 Score=49.04 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=46.6
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~ 403 (481)
....|+++.+.+-.+-..|. +..|+.|+++.+.+..+|+..+.+..++++++..| +....|. ++..+.++++++.+
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhcc
Confidence 55566666666555555555 56666666666666666666666666666666555 4555554 55666666665555
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.50 E-value=1.7 Score=25.41 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=12.5
Q ss_pred cccceEeeeCcCCccCCC
Q 036657 462 GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 462 ~~L~~L~L~~~~l~~lP~ 479 (481)
.+|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356677777777777775
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.27 E-value=4.1 Score=23.54 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=9.3
Q ss_pred CCCcEEEeecCCCCC
Q 036657 441 VSPITIDFSFCVNLT 455 (481)
Q Consensus 441 ~~L~~L~l~~c~~L~ 455 (481)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666666554
No 93
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=66.05 E-value=27 Score=33.95 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=63.9
Q ss_pred HHHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHH-HhcCC---chhhHHHHHhccccCchhhHHHhh-hhccCCCC
Q 036657 111 ELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNN-LKLIS---EPSIYKVLKISYDELNSEVKEIFI-DIACFFKG 185 (481)
Q Consensus 111 ~i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~-l~~~~---~~~i~~~L~lSYd~L~~~~K~cFl-~~a~Fp~~ 185 (481)
+....|++.|+|.|-.+..++..+ |..+... -.... -.++...+..+|.+|+++.+.-+. .++.+..+
T Consensus 182 ~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~ 254 (305)
T TIGR00635 182 EAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG 254 (305)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 456778999999997665544432 1111000 00011 112333356788999998877665 55666543
Q ss_pred -CCHHHHHHHhcCC-CcccccHH-HHhhCcceeecCCCce
Q 036657 186 -EDIDFMTRIHDDP-MSIHDGLN-ILVSKSLITISDENEL 222 (481)
Q Consensus 186 -~~~~~l~~~~~~~-~~~~~~~~-~L~~r~li~~~~~~~~ 222 (481)
...+.+...+... ..++..++ .|++++||.....|++
T Consensus 255 ~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 255 PVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred cccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 5667777777665 66677677 6999999985544443
No 94
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=64.91 E-value=9.1 Score=35.96 Aligned_cols=29 Identities=34% Similarity=0.592 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhH----hhCCCeEEeEEeecCCc
Q 036657 27 CLNELVKILDCK----KMNGQIVIPVFYQVDPS 55 (481)
Q Consensus 27 cl~el~~i~~~~----~~~~~~v~pvfy~v~p~ 55 (481)
|-|||.|+.... ...|..++|||--|||.
T Consensus 155 CPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 155 CPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred ChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 889998877653 35677778999999993
No 95
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=64.32 E-value=7.6 Score=38.47 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=65.5
Q ss_pred HHHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCC---chhhHHHHHhccccCchhhHHHhh-hhccCCCC-
Q 036657 111 ELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLIS---EPSIYKVLKISYDELNSEVKEIFI-DIACFFKG- 185 (481)
Q Consensus 111 ~i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~---~~~i~~~L~lSYd~L~~~~K~cFl-~~a~Fp~~- 185 (481)
+....|++.|+|.|-.+..+...+. .|...- .-..+. -.+..+.+...|.+|++..+.-+. ....|..+
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 276 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGP 276 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCc
Confidence 4577899999999965554444321 111110 000111 123345567788999998888775 66667665
Q ss_pred CCHHHHHHHhcCC-CcccccHH-HHhhCcceeecCCCc
Q 036657 186 EDIDFMTRIHDDP-MSIHDGLN-ILVSKSLITISDENE 221 (481)
Q Consensus 186 ~~~~~l~~~~~~~-~~~~~~~~-~L~~r~li~~~~~~~ 221 (481)
...+.+...+... ..++.-++ .|++++||+-...|+
T Consensus 277 ~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr 314 (328)
T PRK00080 277 VGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR 314 (328)
T ss_pred eeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence 5677787777666 56665666 899999997554443
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.43 E-value=6.1 Score=23.10 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=7.1
Q ss_pred CCceEEEcCCCCcc
Q 036657 348 ENLIELNLPYSKVE 361 (481)
Q Consensus 348 ~~L~~L~L~~~~i~ 361 (481)
.+|++|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555544
No 97
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=59.54 E-value=14 Score=37.82 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=33.2
Q ss_pred hHHHHhhhCCEEEEEEcCCCc--------chhhHHHHHHHHHHhHhhCCCeEEeEEee
Q 036657 2 AISNAIETSDISIIIFSKDYA--------SSKWCLNELVKILDCKKMNGQIVIPVFYQ 51 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya--------~s~~cl~el~~i~~~~~~~~~~v~pvfy~ 51 (481)
.|++-|+..+-+|.|+++|-- .-.|-=.||+--.+| ++.|+|||..
T Consensus 657 sLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~----~KNIiPI~D~ 710 (832)
T KOG3678|consen 657 SLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEH----QKNIIPIFDT 710 (832)
T ss_pred HHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHh----cCCeeeeecc
Confidence 578999999999999999832 223444455555554 4579999966
No 98
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=52.65 E-value=8.7 Score=21.55 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=6.7
Q ss_pred CCceEEEcCCCCcc
Q 036657 348 ENLIELNLPYSKVE 361 (481)
Q Consensus 348 ~~L~~L~L~~~~i~ 361 (481)
++|++|+|++|+|.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 35556666665554
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.87 E-value=19 Score=37.75 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=32.5
Q ss_pred CceEEEcCCCCccccc---ccccCCCCCcEEeccCCCC-CcccCC---CCCCCCCCEEeccCCCCCc
Q 036657 349 NLIELNLPYSKVEQIW---KGEKKAFKLKYIDISHSQQ-LVRMLD---LSETPNLERTNLLNCRDLA 408 (481)
Q Consensus 349 ~L~~L~L~~~~i~~lp---~~~~~L~~L~~L~Ls~~~~-l~~lp~---~~~l~~L~~L~L~~c~~l~ 408 (481)
.+..++|++|++..|- .-....++|+.|+|++|.. +...++ ++.+ -|++|-+.|+.-..
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCcccc
Confidence 4555666666555432 1234567888888887721 222222 3333 37788888765433
No 100
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=36.54 E-value=24 Score=20.74 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=7.5
Q ss_pred CceEEEcCCCCcc
Q 036657 349 NLIELNLPYSKVE 361 (481)
Q Consensus 349 ~L~~L~L~~~~i~ 361 (481)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666553
No 101
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.41 E-value=21 Score=36.11 Aligned_cols=62 Identities=26% Similarity=0.360 Sum_probs=42.4
Q ss_pred cCchhhhhHHHHHHHhhccCCCCCCCChhhhCChhHHHHHHHHHhhhCCCchhHHHHhhhhCCC----ChhHHHH
Q 036657 74 NFPDKVQKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHK----SKQQWKD 144 (481)
Q Consensus 74 ~~~~~v~~w~~al~~~~~~~g~~~~~~~q~~rS~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k----~~~~W~~ 144 (481)
.|..++.-||++........|-..-. + +.. -+....+-+|.|+.|-++...|..+ ..++|..
T Consensus 37 gydak~~fWrdlI~~~s~~~g~~if~-------~-lr~-lq~~F~r~~~vPlsLd~Vi~~l~~~G~vir~sdf~~ 102 (439)
T KOG2911|consen 37 GYDAKMNFWRDLILKYSRKSGRRIFL-------V-LRT-LQELFSRGGGVPLSLDTVIDYLIQEGDVIRISDFLD 102 (439)
T ss_pred hHHhHhhHHHHHHHHHhhhcCCeEee-------H-HHH-HHHHhccCCCcCccHHHHHHHHHhccCeeeHHHhhc
Confidence 34467999999999877777632211 1 112 2345568899999999999999755 4566665
No 102
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=33.30 E-value=4.1e+02 Score=24.85 Aligned_cols=115 Identities=10% Similarity=0.164 Sum_probs=60.6
Q ss_pred hCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCCcccccc----cCcHHHHHHH--HHhcCchhhhhH
Q 036657 9 TSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQ----RGTFEKAFVH--HENNFPDKVQKW 82 (481)
Q Consensus 9 ~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~q----~g~~~~~~~~--~~~~~~~~v~~w 82 (481)
+.+..|+|+.+-=.-+.+++++|..+.+... .+...++|+---.|.-.+.. ...+...+.. +-..+. ...+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~-~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~--~~e~ 197 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQT-DNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD--REET 197 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCccc-CCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC--HHHH
Confidence 4566788888754445678888876666532 23344554433344322211 1112211110 011111 1234
Q ss_pred HHHHHHhhccCCCCCC-CChhhhCChhHHHHHHHHHhhhCCCchhHHHHhhhh
Q 036657 83 RDVLTEASNFSGYDST-ESRQNNRSRDLLELSQEVVCYADGNPLALEVLGSSL 134 (481)
Q Consensus 83 ~~al~~~~~~~g~~~~-~~~q~~rS~~~~~i~~~iv~~c~GlPLAl~~lg~~L 134 (481)
++.+.......|+... ... .+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~--------~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFS--------EGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcC--------HHHHHHHHHHcCCcccHHHHHHHHH
Confidence 4444444444454222 122 4678899999999999999988876
No 103
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=29.88 E-value=26 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=21.7
Q ss_pred HHhhhCCEEEEEEcCCCcchhhHHH--HHHHHHHh
Q 036657 5 NAIETSDISIIIFSKDYASSKWCLN--ELVKILDC 37 (481)
Q Consensus 5 ~ai~~s~~~ivv~s~~ya~s~~cl~--el~~i~~~ 37 (481)
+.|++. -|||||+.+++..||-. ...++++.
T Consensus 3 ~~i~~~--~vvvf~k~~~~~~~Cp~C~~ak~~L~~ 35 (90)
T cd03028 3 KLIKEN--PVVLFMKGTPEEPRCGFSRKVVQILNQ 35 (90)
T ss_pred hhhccC--CEEEEEcCCCCCCCCcHHHHHHHHHHH
Confidence 445554 47889999998888873 55666654
No 104
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=29.36 E-value=95 Score=28.05 Aligned_cols=108 Identities=12% Similarity=-0.005 Sum_probs=55.7
Q ss_pred HHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHh------hCCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCch
Q 036657 4 SNAIETSDISIIIFSKDYASSKWCLNELVKILDCKK------MNGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFPD 77 (481)
Q Consensus 4 ~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~------~~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~~ 77 (481)
..+++++.++|+||+-+ +.+-++++..+.+... ..+..++-|.-+.| ..++.-... +
T Consensus 75 ~~~~~~ad~iilv~D~~---~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D---l~~~~~~~~-----------~ 137 (198)
T cd04142 75 FRGLRNSRAFILVYDIC---SPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD---QQRHRFAPR-----------H 137 (198)
T ss_pred HhhhccCCEEEEEEECC---CHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc---ccccccccH-----------H
Confidence 35688999999999964 5566777766555421 12333444444444 432211111 1
Q ss_pred hhhhHHH-----HHHHhhccCCCCCCCChhhhCChhHHHHHHHHHhhhCCCchhHHHHhhhhCC
Q 036657 78 KVQKWRD-----VLTEASNFSGYDSTESRQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYH 136 (481)
Q Consensus 78 ~v~~w~~-----al~~~~~~~g~~~~~~~q~~rS~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~ 136 (481)
..+.|.. ..-+++-..|.... +-|+.+++.+...=++.|.++..=|.+-+.
T Consensus 138 ~~~~~~~~~~~~~~~e~Sak~g~~v~--------~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~ 193 (198)
T cd04142 138 VLSVLVRKSWKCGYLECSAKYNWHIL--------LLFKELLISATTRGRSTHPALRLQGALHRE 193 (198)
T ss_pred HHHHHHHHhcCCcEEEecCCCCCCHH--------HHHHHHHHHhhccCCCccHHHHHHHHHhhc
Confidence 1112211 11122222222111 346677777777778888888777665443
No 105
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.46 E-value=85 Score=20.63 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=6.8
Q ss_pred cccccccceeec
Q 036657 323 YLPEELRYLHWH 334 (481)
Q Consensus 323 ~l~~~Lr~L~l~ 334 (481)
.+|.++++|.+.
T Consensus 9 ~iP~~l~~L~~g 20 (44)
T PF05725_consen 9 SIPSSLKSLIFG 20 (44)
T ss_pred eeCCCCeEEEEC
Confidence 344466666663
No 106
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=26.58 E-value=1.5e+02 Score=24.98 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=36.4
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCC
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDP 54 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p 54 (481)
++.++|+++.+.++|++-....+.+. .++.+.+.... .+..++.|+=++|-
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~DL 54 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKADL 54 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechhc
Confidence 46789999999999999876666552 25555555332 46678888877773
No 107
>PHA00407 phage lambda Rz1-like protein
Probab=25.44 E-value=41 Score=25.12 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=18.9
Q ss_pred hhhhhHHHHH-----HHhhccCCCCCCC
Q 036657 77 DKVQKWRDVL-----TEASNFSGYDSTE 99 (481)
Q Consensus 77 ~~v~~w~~al-----~~~~~~~g~~~~~ 99 (481)
.+.++||.|| +-|+.++|+.+..
T Consensus 26 ktl~rwkaaLIGlllicv~tISGCaSes 53 (84)
T PHA00407 26 KTLRRWKAALIGLLLICVATISGCASES 53 (84)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5688999998 6889999986654
No 108
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=25.17 E-value=47 Score=26.67 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=14.8
Q ss_pred CcchhhHHHHHHHHHHhH
Q 036657 21 YASSKWCLNELVKILDCK 38 (481)
Q Consensus 21 ya~s~~cl~el~~i~~~~ 38 (481)
|..|+||+++++++-.-+
T Consensus 68 l~~sk~~v~~m~e~~q~~ 85 (105)
T PF11214_consen 68 LNDSKWYVDTMVELKQKQ 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778999999999886543
No 109
>COG3899 Predicted ATPase [General function prediction only]
Probab=24.97 E-value=1.5e+02 Score=33.61 Aligned_cols=125 Identities=19% Similarity=0.308 Sum_probs=81.9
Q ss_pred hHHHHHHHHHhhhCCCchhHHHHhhhhCCC-------ChhHHHHHHHHHhcCC-chhhHHHHHhccccCchhhHHHhhhh
Q 036657 108 DLLELSQEVVCYADGNPLALEVLGSSLYHK-------SKQQWKDKLNNLKLIS-EPSIYKVLKISYDELNSEVKEIFIDI 179 (481)
Q Consensus 108 ~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k-------~~~~W~~~l~~l~~~~-~~~i~~~L~lSYd~L~~~~K~cFl~~ 179 (481)
--.+..+.|++|.+|.|+-+.-+=..|... +...|..=..++...+ .+.+.+.+..--+.||...++..-..
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345678899999999999998877777642 3445554333333332 33366678888999999999999999
Q ss_pred ccCCCCCCHHHHHHHhcCC--CcccccHHHHhhCcceeecC-------CC----ceehhHHHHHHHH
Q 036657 180 ACFFKGEDIDFMTRIHDDP--MSIHDGLNILVSKSLITISD-------EN----ELQMHDLLQEMGQ 233 (481)
Q Consensus 180 a~Fp~~~~~~~l~~~~~~~--~~~~~~~~~L~~r~li~~~~-------~~----~~~mHdll~d~~~ 233 (481)
||+-..++.+.|..++... ..+..-.+.|. .++|.+.. +. +---||++++.+-
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~-e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY 383 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQ-EGLILPLSETYRFGSNVDIATYKFLHDRVQQAAY 383 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhH-hhceeccccccccccccchhhHHhhHHHHHHHHh
Confidence 9999889888777766533 23333333333 34444321 11 1146777777664
No 110
>COG5566 Uncharacterized conserved protein [Function unknown]
Probab=24.72 E-value=1.1e+02 Score=25.43 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=43.4
Q ss_pred ccccCcHHHHHHHHHhcCc--------hhhhhHHHHHHHhhccCCCCCCCChhhhCChhHHHHHHHHHhhhCCCchhHHH
Q 036657 58 RKQRGTFEKAFVHHENNFP--------DKVQKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEVVCYADGNPLALEV 129 (481)
Q Consensus 58 ~~q~g~~~~~~~~~~~~~~--------~~v~~w~~al~~~~~~~g~~~~~~~q~~rS~~~~~i~~~iv~~c~GlPLAl~~ 129 (481)
..|++-|+++.++...-|. +--..|-.-|.+++...+ .++..++.+..+ -|+|+++
T Consensus 3 e~q~~lf~d~~~~~~aLfd~lD~ip~d~l~klwps~Lsev~eV~~---------------ael~~a~ie~~g-k~~alk~ 66 (137)
T COG5566 3 ERQIPLFVDALSKDSALFDFLDLIPGDNLRKLWPSLLSEVHEVFL---------------AELEDAGIEDNG-KPLALKL 66 (137)
T ss_pred chhcccccchHhhhhhhhhhhccCCchhHHHhhHHHHHHHHHHHH---------------HHHHHHhhhhcc-CchHHHH
Confidence 3467777776665444333 223579999999988773 466677777776 8999999
Q ss_pred HhhhhC
Q 036657 130 LGSSLY 135 (481)
Q Consensus 130 lg~~L~ 135 (481)
++.++.
T Consensus 67 v~~l~~ 72 (137)
T COG5566 67 VFKLME 72 (137)
T ss_pred HHHHHH
Confidence 888764
No 111
>PF13730 HTH_36: Helix-turn-helix domain
Probab=23.31 E-value=1e+02 Score=21.05 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=30.0
Q ss_pred cCchhhHHHhhhhccCCCCC-----CHHHHHHHhcCC-CcccccHHHHhhCcce
Q 036657 167 ELNSEVKEIFIDIACFFKGE-----DIDFMTRIHDDP-MSIHDGLNILVSKSLI 214 (481)
Q Consensus 167 ~L~~~~K~cFl~~a~Fp~~~-----~~~~l~~~~~~~-~~~~~~~~~L~~r~li 214 (481)
+|++..+..+++++-|..+. ..+.+.....-. -....++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 57778888888877665331 234444444333 3456678999998875
No 112
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=22.40 E-value=1.1e+02 Score=30.15 Aligned_cols=43 Identities=35% Similarity=0.666 Sum_probs=33.4
Q ss_pred hhhCCEEEEEEcCCCcc----hhhHHH--HHHHHHHhHhhCCCeEEeEE
Q 036657 7 IETSDISIIIFSKDYAS----SKWCLN--ELVKILDCKKMNGQIVIPVF 49 (481)
Q Consensus 7 i~~s~~~ivv~s~~ya~----s~~cl~--el~~i~~~~~~~~~~v~pvf 49 (481)
|..+|--+.|--..||+ |+.|-+ =|.+.-||....|++++|||
T Consensus 192 id~~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlIPvF 240 (501)
T KOG1136|consen 192 IDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPVF 240 (501)
T ss_pred hccccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEEEee
Confidence 55666666666666875 677765 47889999999999999999
No 113
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=22.08 E-value=68 Score=27.07 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=26.7
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHH
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKIL 35 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~ 35 (481)
+|.++|.+-..+|||+.+.|-.+ ||.||+++.
T Consensus 63 ~L~~~i~~~~g~ivvyN~sfE~~--rL~ela~~~ 94 (130)
T PF11074_consen 63 ALIKAIGSIYGSIVVYNKSFEKT--RLKELAELF 94 (130)
T ss_pred HHHHHhhhhcCeEEEechHHHHH--HHHHHHHHh
Confidence 46778877769999999998877 999998874
No 114
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=22.03 E-value=33 Score=33.06 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=44.1
Q ss_pred HhhCCCeEEeEEeecCCccccccc--CcHHHHHHHHHhcCc-hhhhhHHHHH---HHhhccCCCCCCC--ChhhhCChhH
Q 036657 38 KKMNGQIVIPVFYQVDPSDVRKQR--GTFEKAFVHHENNFP-DKVQKWRDVL---TEASNFSGYDSTE--SRQNNRSRDL 109 (481)
Q Consensus 38 ~~~~~~~v~pvfy~v~p~~v~~q~--g~~~~~~~~~~~~~~-~~v~~w~~al---~~~~~~~g~~~~~--~~q~~rS~~~ 109 (481)
.|+..|+++| |.=|++|+|+.+ |..|+.+- -.|. ..-..-|+|. +-|-|+.|-++.. .+=+ +-.
T Consensus 82 ak~GSQviiP--yR~d~~~~r~lkvmGdLGQvl~---~~fd~~DedSIr~vvk~sNVVINLIGrd~eTknf~f~---Dvn 153 (391)
T KOG2865|consen 82 AKMGSQVIIP--YRGDEYDPRHLKVMGDLGQVLF---MKFDLRDEDSIRAVVKHSNVVINLIGRDYETKNFSFE---DVN 153 (391)
T ss_pred hhcCCeEEEe--ccCCccchhheeecccccceee---eccCCCCHHHHHHHHHhCcEEEEeeccccccCCcccc---ccc
Confidence 4567889998 899999999874 77775331 0111 1111223344 3467888865543 3100 223
Q ss_pred HHHHHHHHhhhC
Q 036657 110 LELSQEVVCYAD 121 (481)
Q Consensus 110 ~~i~~~iv~~c~ 121 (481)
..++++|+.-|+
T Consensus 154 ~~~aerlArick 165 (391)
T KOG2865|consen 154 VHIAERLARICK 165 (391)
T ss_pred chHHHHHHHHHH
Confidence 457788887774
No 115
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=21.32 E-value=90 Score=23.76 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.9
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchh
Q 036657 2 AISNAIETSDISIIIFSKDYASSK 25 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~ 25 (481)
..+++|++|.+.|.++-..|-+..
T Consensus 45 ~cl~~v~~cDifI~ilG~rYG~~~ 68 (83)
T PF13271_consen 45 ICLKEVDECDIFILILGNRYGSVP 68 (83)
T ss_pred HHHHHHhhCCEEEEeeccccCCCC
Confidence 357899999999999999998753
No 116
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=20.71 E-value=2.2e+02 Score=20.52 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=27.6
Q ss_pred HHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEE
Q 036657 4 SNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVI 46 (481)
Q Consensus 4 ~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~ 46 (481)
+.+.+...-.+||+++.+..+. -+|...+.+..+..|.+|+
T Consensus 28 ~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 28 YEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred HHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence 3456667888999999966554 4566666666666666654
No 117
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=20.67 E-value=1.3e+02 Score=24.77 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=32.0
Q ss_pred hHHHHhh--hCCEEEEEEcCCCcchhhHHH--HHHHHHHhH-hhCCCeEEeEEeecCCccccccc
Q 036657 2 AISNAIE--TSDISIIIFSKDYASSKWCLN--ELVKILDCK-KMNGQIVIPVFYQVDPSDVRKQR 61 (481)
Q Consensus 2 ~~~~ai~--~s~~~ivv~s~~ya~s~~cl~--el~~i~~~~-~~~~~~v~pvfy~v~p~~v~~q~ 61 (481)
+.-+||. +.++.||-|.. +||-. .+..+++.. +.-.+. -+||.||..+|..-.
T Consensus 4 ~~d~~i~~~~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~--~~f~kVDVDev~dva 61 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKM--ASIYLVDVDKVPVYT 61 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCc--eEEEEEeccccHHHH
Confidence 3456676 57888888865 57643 333344432 222222 679999998887533
Done!