Query 036657
Match_columns 481
No_of_seqs 576 out of 3462
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 06:30:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 8.3E-38 2.8E-42 279.2 10.4 112 1-118 81-194 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 2E-37 6.8E-42 272.7 9.5 117 1-121 54-171 (176)
3 4fcg_A Uncharacterized protein 99.8 2.2E-20 7.4E-25 184.5 14.8 178 287-475 121-314 (328)
4 4fcg_A Uncharacterized protein 99.8 6.3E-20 2.2E-24 181.1 15.1 200 267-481 81-297 (328)
5 2a5y_B CED-4; apoptosis; HET: 99.8 5.2E-20 1.8E-24 194.3 5.9 133 107-241 313-473 (549)
6 3zyj_A Leucine-rich repeat-con 99.8 1.7E-17 5.8E-22 170.4 18.9 184 283-479 78-272 (440)
7 3zyi_A Leucine-rich repeat-con 99.8 1.5E-17 5E-22 171.4 18.5 184 283-479 89-283 (452)
8 3h16_A TIR protein; bacteria T 99.8 3.6E-20 1.2E-24 161.8 -1.3 85 2-88 66-150 (154)
9 1ogq_A PGIP-2, polygalacturona 99.8 2.7E-18 9.2E-23 168.3 11.8 202 267-479 50-286 (313)
10 1ozn_A Reticulon 4 receptor; N 99.7 4.6E-17 1.6E-21 157.0 18.6 194 267-475 32-238 (285)
11 2z80_A TOLL-like receptor 2, v 99.7 4.1E-18 1.4E-22 169.7 9.9 172 268-451 53-232 (353)
12 1h6u_A Internalin H; cell adhe 99.7 2.5E-17 8.5E-22 161.0 15.0 192 267-479 41-234 (308)
13 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-17 3.6E-22 164.0 10.8 180 286-478 118-308 (313)
14 2z66_A Variable lymphocyte rec 99.7 2E-17 6.7E-22 161.3 12.5 174 288-475 73-261 (306)
15 3o6n_A APL1; leucine-rich repe 99.7 1E-16 3.5E-21 161.7 17.2 88 390-479 244-335 (390)
16 2id5_A Lingo-1, leucine rich r 99.7 2E-16 6.8E-21 163.9 19.5 177 268-458 33-217 (477)
17 1xku_A Decorin; proteoglycan, 99.7 1.9E-16 6.4E-21 156.1 17.6 181 284-480 67-281 (330)
18 3o6n_A APL1; leucine-rich repe 99.7 1.4E-16 4.6E-21 160.8 16.5 66 413-480 243-313 (390)
19 2xwt_C Thyrotropin receptor; s 99.7 8E-17 2.7E-21 151.3 13.7 175 285-471 47-235 (239)
20 1p9a_G Platelet glycoprotein I 99.7 2.3E-16 7.8E-21 152.8 17.2 169 293-474 31-207 (290)
21 1p9a_G Platelet glycoprotein I 99.7 2E-16 6.7E-21 153.3 16.4 176 289-481 6-191 (290)
22 3oja_B Anopheles plasmodium-re 99.7 1.7E-16 5.7E-21 169.3 17.4 88 390-479 250-341 (597)
23 3oja_B Anopheles plasmodium-re 99.7 1.4E-16 4.9E-21 169.9 16.7 184 284-480 66-319 (597)
24 1h6u_A Internalin H; cell adhe 99.7 8.1E-17 2.8E-21 157.4 13.4 173 289-479 37-212 (308)
25 1h6t_A Internalin B; cell adhe 99.7 6.1E-17 2.1E-21 156.9 12.5 172 290-478 43-216 (291)
26 3zyj_A Leucine-rich repeat-con 99.7 3.5E-16 1.2E-20 160.5 18.6 194 266-475 87-292 (440)
27 2ft3_A Biglycan; proteoglycan, 99.7 2.9E-16 9.8E-21 155.0 17.3 182 284-479 69-281 (332)
28 3zyi_A Leucine-rich repeat-con 99.7 3.5E-16 1.2E-20 161.1 18.5 195 266-475 98-303 (452)
29 3o53_A Protein LRIM1, AGAP0063 99.7 8.1E-17 2.8E-21 158.0 12.3 192 267-479 34-231 (317)
30 2o6q_A Variable lymphocyte rec 99.7 9.6E-16 3.3E-20 146.7 19.5 169 293-475 37-218 (270)
31 2z62_A TOLL-like receptor 4, v 99.7 3.1E-16 1.1E-20 150.5 15.7 195 268-477 29-239 (276)
32 2xwt_C Thyrotropin receptor; s 99.7 1.7E-16 5.7E-21 149.1 13.4 176 293-480 31-223 (239)
33 3oja_A Leucine-rich immune mol 99.7 8.5E-17 2.9E-21 167.3 12.4 193 267-480 34-232 (487)
34 4eco_A Uncharacterized protein 99.7 1.9E-17 6.5E-22 177.9 7.4 155 286-452 240-413 (636)
35 2id5_A Lingo-1, leucine rich r 99.7 4.5E-16 1.5E-20 161.3 17.5 181 284-477 71-287 (477)
36 2z66_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 152.6 15.4 201 267-479 28-240 (306)
37 1wwl_A Monocyte differentiatio 99.7 1.3E-16 4.4E-21 156.2 12.3 177 291-479 93-291 (312)
38 3rgz_A Protein brassinosteroid 99.7 2.3E-16 7.9E-21 173.1 15.4 185 286-479 459-722 (768)
39 3rgz_A Protein brassinosteroid 99.7 2E-16 6.7E-21 173.7 14.4 185 286-479 435-698 (768)
40 1xku_A Decorin; proteoglycan, 99.7 7.8E-16 2.7E-20 151.6 17.3 201 267-476 76-307 (330)
41 2o6q_A Variable lymphocyte rec 99.7 1.6E-15 5.4E-20 145.2 18.8 172 293-480 16-199 (270)
42 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-15 3.7E-20 147.4 17.7 175 292-479 31-218 (285)
43 3rfs_A Internalin B, repeat mo 99.7 6.6E-16 2.3E-20 148.0 15.9 192 267-480 41-241 (272)
44 3rfs_A Internalin B, repeat mo 99.7 1E-15 3.4E-20 146.8 17.0 175 289-478 37-221 (272)
45 4ecn_A Leucine-rich repeat pro 99.7 1.7E-16 5.7E-21 174.8 13.0 178 290-479 488-690 (876)
46 3sfz_A APAF-1, apoptotic pepti 99.7 3.5E-17 1.2E-21 188.5 7.5 132 107-239 304-452 (1249)
47 4fmz_A Internalin; leucine ric 99.7 7.6E-16 2.6E-20 152.6 16.2 175 289-478 62-259 (347)
48 4eco_A Uncharacterized protein 99.7 4.4E-16 1.5E-20 167.2 15.3 198 267-479 305-530 (636)
49 4ecn_A Leucine-rich repeat pro 99.7 1.4E-16 4.7E-21 175.5 11.1 200 266-480 490-715 (876)
50 3t6q_A CD180 antigen; protein- 99.7 1.2E-15 4.2E-20 162.7 17.3 148 268-428 34-189 (606)
51 2z80_A TOLL-like receptor 2, v 99.7 5.7E-16 2E-20 154.1 13.6 174 293-479 52-239 (353)
52 2z62_A TOLL-like receptor 4, v 99.7 1.1E-15 3.8E-20 146.6 15.0 175 293-480 28-218 (276)
53 3bz5_A Internalin-J, INLJ; leu 99.6 5.4E-15 1.9E-19 152.4 19.7 169 288-479 59-250 (457)
54 1wwl_A Monocyte differentiatio 99.6 5.7E-16 2E-20 151.5 11.7 194 266-476 94-310 (312)
55 3vq2_A TLR4, TOLL-like recepto 99.6 1.9E-15 6.5E-20 161.2 16.4 177 286-475 369-558 (606)
56 1m9s_A Internalin B; cell inva 99.6 6.2E-16 2.1E-20 164.4 12.0 154 288-458 60-213 (605)
57 3vq2_A TLR4, TOLL-like recepto 99.6 1.1E-15 3.9E-20 162.9 13.9 184 288-480 345-539 (606)
58 3g06_A SSPH2 (leucine-rich rep 99.6 6.5E-15 2.2E-19 156.8 19.6 59 418-480 221-279 (622)
59 3v47_A TOLL-like receptor 5B a 99.6 3.5E-15 1.2E-19 153.4 16.6 89 390-480 295-389 (455)
60 4glp_A Monocyte differentiatio 99.6 5.4E-16 1.8E-20 151.6 9.3 145 327-475 146-307 (310)
61 3cvr_A Invasion plasmid antige 99.6 3.7E-15 1.3E-19 157.0 15.5 175 268-476 60-244 (571)
62 3m19_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 137.6 17.4 148 293-452 35-190 (251)
63 2ft3_A Biglycan; proteoglycan, 99.6 8.1E-15 2.8E-19 144.5 16.9 192 266-475 77-307 (332)
64 4ezg_A Putative uncharacterize 99.6 2.3E-15 8E-20 137.0 12.0 147 290-450 41-190 (197)
65 4fmz_A Internalin; leucine ric 99.6 6.7E-15 2.3E-19 145.8 16.3 152 321-479 173-328 (347)
66 2z7x_B TOLL-like receptor 1, v 99.6 2.6E-15 8.8E-20 157.2 13.5 104 267-382 21-126 (520)
67 3v47_A TOLL-like receptor 5B a 99.6 5.8E-15 2E-19 151.8 15.8 111 364-478 292-411 (455)
68 3bz5_A Internalin-J, INLJ; leu 99.6 8.7E-15 3E-19 150.8 16.8 150 287-458 36-186 (457)
69 1jl5_A Outer protein YOPM; leu 99.6 1.7E-14 5.9E-19 148.4 19.0 121 327-459 174-294 (454)
70 2z81_A CD282 antigen, TOLL-lik 99.6 1.2E-15 4.1E-20 160.7 10.1 177 267-456 26-210 (549)
71 1ziw_A TOLL-like receptor 3; i 99.6 2E-14 6.8E-19 155.5 18.8 182 284-478 396-600 (680)
72 1jl5_A Outer protein YOPM; leu 99.6 3.6E-14 1.2E-18 146.0 19.9 163 293-478 131-293 (454)
73 4glp_A Monocyte differentiatio 99.6 4.1E-15 1.4E-19 145.3 12.1 178 290-479 88-289 (310)
74 2z81_A CD282 antigen, TOLL-lik 99.6 5.3E-15 1.8E-19 155.7 13.6 174 293-477 26-211 (549)
75 2z7x_B TOLL-like receptor 1, v 99.6 1E-14 3.5E-19 152.7 15.4 110 368-479 321-438 (520)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1E-14 3.6E-19 154.2 15.7 104 267-382 52-157 (562)
77 3oja_A Leucine-rich immune mol 99.6 2.2E-15 7.6E-20 156.6 9.9 172 292-480 33-209 (487)
78 4ezg_A Putative uncharacterize 99.6 5.2E-15 1.8E-19 134.7 11.0 151 322-476 41-195 (197)
79 3g06_A SSPH2 (leucine-rich rep 99.6 3.3E-14 1.1E-18 151.4 18.9 180 267-479 61-258 (622)
80 3t6q_A CD180 antigen; protein- 99.6 1.6E-14 5.5E-19 154.0 16.6 183 283-478 268-492 (606)
81 1o6v_A Internalin A; bacterial 99.6 1.9E-14 6.5E-19 148.7 16.3 154 320-480 238-393 (466)
82 2z63_A TOLL-like receptor 4, v 99.6 7.9E-15 2.7E-19 155.0 13.7 148 268-427 29-186 (570)
83 1h6t_A Internalin B; cell adhe 99.6 7.8E-15 2.7E-19 142.1 12.4 171 267-458 46-216 (291)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3E-14 1E-18 150.7 17.5 109 368-479 350-467 (562)
85 3m19_A Variable lymphocyte rec 99.6 3.7E-14 1.3E-18 134.1 16.0 166 295-476 16-193 (251)
86 1xeu_A Internalin C; cellular 99.6 2.1E-15 7.2E-20 143.8 7.3 152 288-458 36-188 (263)
87 1o6v_A Internalin A; bacterial 99.6 2.8E-14 9.7E-19 147.4 16.1 192 266-478 176-369 (466)
88 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.9E-19 143.9 13.2 199 268-478 31-240 (350)
89 3o53_A Protein LRIM1, AGAP0063 99.6 2.8E-15 9.5E-20 147.0 6.9 177 286-480 27-209 (317)
90 1ziw_A TOLL-like receptor 3; i 99.6 3.8E-14 1.3E-18 153.3 16.1 149 267-428 25-181 (680)
91 3j0a_A TOLL-like receptor 5; m 99.6 2.6E-14 8.7E-19 158.5 15.0 149 267-427 24-183 (844)
92 2o6s_A Variable lymphocyte rec 99.5 5.4E-14 1.8E-18 128.9 13.7 154 293-464 28-188 (208)
93 2z63_A TOLL-like receptor 4, v 99.5 3E-14 1E-18 150.6 13.5 177 290-476 344-532 (570)
94 1xeu_A Internalin C; cellular 99.5 3.4E-14 1.2E-18 135.4 12.2 148 267-435 41-188 (263)
95 3cvr_A Invasion plasmid antige 99.5 1E-13 3.5E-18 146.0 16.4 143 291-459 98-248 (571)
96 1m9s_A Internalin B; cell inva 99.5 5.7E-14 1.9E-18 149.3 14.4 174 289-479 39-214 (605)
97 1vt4_I APAF-1 related killer D 99.5 4.8E-15 1.6E-19 161.1 5.3 106 120-232 323-436 (1221)
98 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 127.8 15.2 133 314-452 31-170 (229)
99 1z6t_A APAF-1, apoptotic prote 99.5 1.1E-14 3.7E-19 155.1 7.6 127 108-235 305-448 (591)
100 2v9t_B SLIT homolog 2 protein 99.5 2.3E-13 7.9E-18 126.1 14.8 133 314-452 23-163 (220)
101 2o6s_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 128.0 11.2 156 315-480 20-184 (208)
102 3e6j_A Variable lymphocyte rec 99.5 2.7E-13 9.2E-18 126.4 15.1 145 327-476 20-173 (229)
103 3j0a_A TOLL-like receptor 5; m 99.5 1.9E-13 6.6E-18 151.4 16.4 173 291-475 22-217 (844)
104 4ay9_X Follicle-stimulating ho 99.5 1.2E-13 4.1E-18 137.2 13.2 176 293-480 30-220 (350)
105 2xot_A Amphoterin-induced prot 99.5 1.3E-13 4.6E-18 137.5 13.6 164 296-475 21-202 (361)
106 2ast_B S-phase kinase-associat 99.5 4.6E-15 1.6E-19 146.2 1.2 204 266-479 92-310 (336)
107 4g8a_A TOLL-like receptor 4; l 99.5 1.8E-13 6.3E-18 146.0 13.6 129 294-435 53-189 (635)
108 2v70_A SLIT-2, SLIT homolog 2 99.5 4.4E-13 1.5E-17 124.1 13.6 123 327-452 33-164 (220)
109 2v9t_B SLIT homolog 2 protein 99.5 1.1E-12 3.7E-17 121.5 15.5 143 328-475 13-165 (220)
110 2ell_A Acidic leucine-rich nuc 99.4 2.1E-13 7.1E-18 120.6 9.8 129 348-479 24-164 (168)
111 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.1E-17 121.2 15.1 143 328-475 13-166 (220)
112 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4.2E-17 130.5 15.6 147 328-479 20-180 (361)
113 2ast_B S-phase kinase-associat 99.4 2E-14 6.7E-19 141.7 1.6 176 289-472 89-282 (336)
114 1dce_A Protein (RAB geranylger 99.4 1.3E-15 4.5E-20 160.8 -7.5 177 290-480 346-551 (567)
115 3ub2_A TOLL/interleukin-1 rece 99.4 8.1E-15 2.8E-19 126.1 -1.4 82 2-86 57-145 (146)
116 2ell_A Acidic leucine-rich nuc 99.4 5E-13 1.7E-17 118.1 10.1 132 292-435 23-163 (168)
117 4b8c_D Glucose-repressible alc 99.4 1.2E-13 4.3E-18 150.1 4.9 107 318-427 217-325 (727)
118 2ca6_A RAN GTPase-activating p 99.4 4.6E-14 1.6E-18 142.1 0.3 184 287-478 88-319 (386)
119 4g8a_A TOLL-like receptor 4; l 99.4 7.3E-12 2.5E-16 133.6 17.0 177 286-475 390-580 (635)
120 2je0_A Acidic leucine-rich nuc 99.3 1E-12 3.4E-17 113.7 7.1 106 327-436 18-130 (149)
121 2wfh_A SLIT homolog 2 protein 99.3 8.6E-12 3E-16 113.0 13.6 120 329-452 13-137 (193)
122 2je0_A Acidic leucine-rich nuc 99.3 9.2E-13 3.2E-17 113.9 6.5 124 292-427 16-149 (149)
123 1a9n_A U2A', U2A'; complex (nu 99.3 1.4E-12 4.8E-17 116.2 7.8 122 327-452 20-151 (176)
124 4b8c_D Glucose-repressible alc 99.3 3.9E-13 1.3E-17 146.2 3.7 152 284-451 215-369 (727)
125 1a9n_A U2A', U2A'; complex (nu 99.3 2.1E-12 7.2E-17 115.1 7.7 130 287-429 13-151 (176)
126 2ca6_A RAN GTPase-activating p 99.3 1.2E-13 4.1E-18 139.0 -1.0 200 267-476 32-288 (386)
127 1dce_A Protein (RAB geranylger 99.3 6.1E-12 2.1E-16 132.8 11.3 177 286-469 365-567 (567)
128 1w8a_A SLIT protein; signaling 99.3 2.3E-11 7.8E-16 110.0 11.7 100 327-427 30-135 (192)
129 1w8a_A SLIT protein; signaling 99.3 3.9E-11 1.3E-15 108.4 13.2 121 328-452 10-137 (192)
130 2wfh_A SLIT homolog 2 protein 99.3 2.8E-11 9.4E-16 109.6 11.7 118 296-427 13-135 (193)
131 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.4E-15 103.4 13.7 122 327-452 8-135 (177)
132 3goz_A Leucine-rich repeat-con 99.2 1.7E-12 5.9E-17 129.4 1.4 197 268-477 23-268 (362)
133 3goz_A Leucine-rich repeat-con 99.2 3.4E-12 1.2E-16 127.3 2.6 201 268-477 52-299 (362)
134 1ds9_A Outer arm dynein; leuci 99.2 7.5E-14 2.6E-18 127.1 -10.8 103 288-403 43-149 (198)
135 2o6r_A Variable lymphocyte rec 99.1 4.5E-10 1.5E-14 99.8 12.6 100 327-428 29-134 (177)
136 2r9u_A Variable lymphocyte rec 99.1 4.6E-10 1.6E-14 99.7 11.0 96 329-427 15-114 (174)
137 1ds9_A Outer arm dynein; leuci 99.1 1.9E-12 6.6E-17 117.7 -5.5 128 316-448 39-181 (198)
138 3g39_A Variable lymphocyte rec 99.1 6.7E-10 2.3E-14 98.2 10.8 97 328-427 11-111 (170)
139 1z7x_W Ribonuclease inhibitor; 99.1 1.5E-11 5E-16 126.4 -0.4 177 292-476 198-412 (461)
140 1z7x_W Ribonuclease inhibitor; 99.0 7.3E-12 2.5E-16 128.6 -4.7 182 286-475 163-383 (461)
141 1fyx_A TOLL-like receptor 2; b 99.0 2.3E-11 7.8E-16 105.1 -1.7 56 2-57 53-110 (149)
142 2r9u_A Variable lymphocyte rec 99.0 1.5E-09 5.2E-14 96.3 10.0 105 296-414 15-124 (174)
143 2js7_A Myeloid differentiation 99.0 7.2E-11 2.5E-15 103.0 0.7 53 2-54 63-117 (160)
144 2j67_A TOLL like receptor 10; 98.9 7.1E-11 2.4E-15 104.8 -0.7 54 2-55 83-138 (178)
145 3g39_A Variable lymphocyte rec 98.9 5.3E-09 1.8E-13 92.4 10.2 98 295-405 11-113 (170)
146 1t3g_A X-linked interleukin-1 98.9 4.7E-10 1.6E-14 97.7 3.1 55 2-56 60-116 (159)
147 3ogk_B Coronatine-insensitive 98.8 4.4E-10 1.5E-14 119.2 1.0 147 327-475 193-391 (592)
148 3ogk_B Coronatine-insensitive 98.8 1E-09 3.6E-14 116.2 3.8 85 288-382 215-304 (592)
149 3sb4_A Hypothetical leucine ri 98.8 1.7E-08 5.9E-13 98.9 12.2 149 324-479 100-314 (329)
150 2p1m_B Transport inhibitor res 98.8 5.9E-10 2E-14 118.1 0.3 172 291-470 128-346 (594)
151 3sb4_A Hypothetical leucine ri 98.7 4.2E-08 1.5E-12 96.1 11.2 169 283-468 83-327 (329)
152 2p1m_B Transport inhibitor res 98.7 6.7E-10 2.3E-14 117.7 -2.6 203 267-476 130-386 (594)
153 4fdw_A Leucine rich hypothetic 98.7 2.7E-07 9.3E-12 93.0 15.6 176 284-479 171-362 (401)
154 2ifg_A High affinity nerve gro 98.7 5.1E-08 1.7E-12 96.1 10.0 86 315-404 22-113 (347)
155 2ifg_A High affinity nerve gro 98.6 2.2E-07 7.5E-12 91.5 10.7 99 330-432 12-116 (347)
156 4fdw_A Leucine rich hypothetic 98.5 2.5E-06 8.6E-11 85.8 15.8 174 284-479 149-339 (401)
157 2ra8_A Uncharacterized protein 98.4 1.9E-07 6.5E-12 92.6 4.7 186 263-452 103-318 (362)
158 3un9_A NLR family member X1; l 98.3 3.1E-08 1.1E-12 98.8 -3.7 123 327-452 102-250 (372)
159 3e4g_A ATP synthase subunit S, 98.2 9.4E-07 3.2E-11 77.7 5.2 94 340-433 52-154 (176)
160 3e4g_A ATP synthase subunit S, 98.1 2.3E-06 8E-11 75.2 4.4 94 362-456 52-154 (176)
161 3un9_A NLR family member X1; l 98.1 3.5E-07 1.2E-11 91.2 -1.2 132 292-433 100-253 (372)
162 2ra8_A Uncharacterized protein 97.8 1.9E-05 6.4E-10 78.2 6.8 179 293-476 107-321 (362)
163 3rw6_A Nuclear RNA export fact 97.7 5.6E-06 1.9E-10 78.1 0.0 78 347-425 169-258 (267)
164 1io0_A Tropomodulin; LRR prote 97.2 4E-05 1.4E-09 68.2 -0.8 20 286-305 29-49 (185)
165 3rw6_A Nuclear RNA export fact 97.1 0.00023 8E-09 67.0 3.2 45 290-341 167-211 (267)
166 1io0_A Tropomodulin; LRR prote 97.0 0.00018 6.1E-09 63.9 1.1 103 348-452 36-162 (185)
167 4gt6_A Cell surface protein; l 96.8 0.034 1.2E-06 55.1 16.4 75 368-448 262-341 (394)
168 4h09_A Hypothetical leucine ri 96.7 0.017 5.8E-07 56.9 13.7 96 347-448 239-340 (379)
169 4fs7_A Uncharacterized protein 96.7 0.03 1E-06 55.6 15.5 76 390-471 293-375 (394)
170 4fs7_A Uncharacterized protein 96.4 0.017 5.9E-07 57.3 11.5 96 347-450 275-375 (394)
171 4gt6_A Cell surface protein; l 96.1 0.016 5.3E-07 57.6 8.8 76 347-427 287-366 (394)
172 3rfe_A Platelet glycoprotein I 95.9 0.0092 3.1E-07 49.4 5.4 52 330-382 12-66 (130)
173 4h09_A Hypothetical leucine ri 95.9 0.048 1.6E-06 53.6 11.3 128 284-426 208-341 (379)
174 3rfe_A Platelet glycoprotein I 93.8 0.081 2.8E-06 43.6 5.3 51 352-405 12-66 (130)
175 2qen_A Walker-type ATPase; unk 89.8 0.79 2.7E-05 43.8 8.1 113 111-231 226-347 (350)
176 2fna_A Conserved hypothetical 89.0 1 3.5E-05 43.1 8.2 110 114-231 233-355 (357)
177 1eiw_A Hypothetical protein MT 74.8 2.3 7.9E-05 33.7 3.4 39 6-48 35-73 (111)
178 1pgv_A TMD-1, tropomodulin TMD 68.7 2.1 7E-05 37.8 2.0 12 349-360 71-82 (197)
179 1pgv_A TMD-1, tropomodulin TMD 66.5 3.3 0.00011 36.4 2.9 35 327-361 71-111 (197)
180 1w5s_A Origin recognition comp 54.2 12 0.00041 36.4 4.8 101 111-217 240-371 (412)
181 3hyn_A Putative signal transdu 54.2 11 0.00037 32.5 3.8 62 2-66 72-134 (189)
182 2pp6_A Gifsy-2 prophage ATP-bi 33.7 18 0.00061 27.7 1.7 23 1-23 42-64 (102)
183 3dt5_A Uncharacterized protein 32.8 8.4 0.00029 28.9 -0.2 37 21-57 37-77 (135)
184 2lz0_A Uncharacterized protein 26.5 65 0.0022 24.5 4.0 35 367-403 16-52 (100)
185 1egw_A MADS box transcription 24.4 18 0.00063 26.3 0.4 29 9-37 39-67 (77)
186 1tu9_A Hypothetical protein PA 22.0 31 0.0011 27.6 1.4 44 50-93 84-128 (134)
187 4hde_A SCO1/SENC family lipopr 21.5 1.1E+02 0.0038 25.3 4.9 43 11-55 33-79 (170)
188 2nrl_A Myoglobin; transport pr 20.0 34 0.0012 28.0 1.2 43 50-93 93-136 (147)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=8.3e-38 Score=279.23 Aligned_cols=112 Identities=38% Similarity=0.737 Sum_probs=101.8
Q ss_pred ChHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhh-CCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCc-hh
Q 036657 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKM-NGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFP-DK 78 (481)
Q Consensus 1 ~~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~-~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~-~~ 78 (481)
|+|++||++||++|||||+|||+|+|||+||++|++|++. .|++|+||||+|||+|||+|+|+||+||++|++++. ++
T Consensus 81 ~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~ 160 (204)
T 3ozi_A 81 PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQT 160 (204)
T ss_dssp TTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHH
Confidence 5789999999999999999999999999999999999875 689999999999999999999999999999999988 89
Q ss_pred hhhHHHHHHHhhccCCCCCCCChhhhCChhHHHHHHHHHh
Q 036657 79 VQKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEVVC 118 (481)
Q Consensus 79 v~~w~~al~~~~~~~g~~~~~~~q~~rS~~~~~i~~~iv~ 118 (481)
+++||+||++||+++||++.++. +-.++.++||+
T Consensus 161 v~~Wr~AL~~va~lsG~~~~~~~------~e~~~i~~Iv~ 194 (204)
T 3ozi_A 161 IQNWKDALKKVGDLKGWHIGKND------KQGAIADKVSA 194 (204)
T ss_dssp HHHHHHHHHHHHTSCBEEECTTS------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCceecCCCC------CHHHHHHHHHH
Confidence 99999999999999999999875 22345555554
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2e-37 Score=272.71 Aligned_cols=117 Identities=35% Similarity=0.655 Sum_probs=100.3
Q ss_pred ChHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCc-hhh
Q 036657 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFP-DKV 79 (481)
Q Consensus 1 ~~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~-~~v 79 (481)
++|.+||++|+++|||||+|||+|+|||+||++|++|++.+|++|+||||+|||+|||+|+|+||+||++|+++.. +++
T Consensus 54 ~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~ 133 (176)
T 3jrn_A 54 PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKV 133 (176)
T ss_dssp -----CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999866 899
Q ss_pred hhHHHHHHHhhccCCCCCCCChhhhCChhHHHHHHHHHhhhC
Q 036657 80 QKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEVVCYAD 121 (481)
Q Consensus 80 ~~w~~al~~~~~~~g~~~~~~~q~~rS~~~~~i~~~iv~~c~ 121 (481)
++||+||++||+++||++.... ++-.++|+++|.++..
T Consensus 134 ~~Wr~AL~~va~~~G~~~~~~e----~~~i~~Iv~~v~~~l~ 171 (176)
T 3jrn_A 134 LKWRQALTNFAQLSGDCSGDDD----SKLVDKIANEISNKKT 171 (176)
T ss_dssp HHHHHHHHHHTTSCCEECCSCH----HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcccceecCCCH----HHHHHHHHHHHHHHhc
Confidence 9999999999999999995432 1334556666666654
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2.2e-20 Score=184.50 Aligned_cols=178 Identities=22% Similarity=0.297 Sum_probs=96.6
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc-cCCCCCCCCC----------CCCceEEEc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY-SLKMLPFDFE----------PENLIELNL 355 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~-~l~~lP~~~~----------l~~L~~L~L 355 (481)
..|.++++|++|++++|.+ ..+|..+..++ +|++|++++| ....+|..+. +.+|++|++
T Consensus 121 ~~~~~l~~L~~L~Ls~n~l---------~~lp~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 121 DTMQQFAGLETLTLARNPL---------RALPASIASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190 (328)
T ss_dssp SCGGGGTTCSEEEEESCCC---------CCCCGGGGGCT-TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEE
T ss_pred HHHhccCCCCEEECCCCcc---------ccCcHHHhcCc-CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEEC
Confidence 3445555555555555552 24555555555 5555555553 2334554432 555555555
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccC
Q 036657 356 PYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSF 434 (481)
Q Consensus 356 ~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~l 434 (481)
++|+++.+|..+..+++|++|++++|. +..+|. ++.+++|++|++++|.....+|..++.+++|++|++++|+.+..+
T Consensus 191 ~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 191 EWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp EEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred cCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence 555555555555555666666665553 445544 555556666666655555555555555666666666655555555
Q ss_pred CCCCC-CCCCcEEEeecCCCCCccCCccccc---ceEeeeCcCCc
Q 036657 435 PRGIH-FVSPITIDFSFCVNLTEFPQISGNI---IELKLWYTAIE 475 (481)
Q Consensus 435 p~~~~-l~~L~~L~l~~c~~L~~lp~~~~~L---~~L~L~~~~l~ 475 (481)
|..+. +++|++|++++|+.++.+|..+++| +.+++..+.+.
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 55443 5566666666655555555544333 44444444433
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=6.3e-20 Score=181.15 Aligned_cols=200 Identities=18% Similarity=0.262 Sum_probs=169.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+...... .+ +..+.++++|++|++++|.+ ..+|..+..++ +|++|++++|.+..+|..+.
T Consensus 81 ~~l~~L~L~~n~l~--~l-p~~l~~l~~L~~L~L~~n~l---------~~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QF-PDQAFRLSHLQHMTIDAAGL---------MELPDTMQQFA-GLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCS--SC-CSCGGGGTTCSEEEEESSCC---------CCCCSCGGGGT-TCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCch--hc-ChhhhhCCCCCEEECCCCCc---------cchhHHHhccC-CCCEEECCCCccccCcHHHh
Confidence 45666666554443 23 34567799999999999984 48899999999 99999999999999999887
Q ss_pred -CCCceEEEcCCC-CcccccccccC---------CCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccc
Q 036657 347 -PENLIELNLPYS-KVEQIWKGEKK---------AFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSI 414 (481)
Q Consensus 347 -l~~L~~L~L~~~-~i~~lp~~~~~---------L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i 414 (481)
+.+|++|++++| .+..+|..+.. +++|++|++++| .+..+|. ++.+++|++|++++| .+..+|..+
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l 225 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSALGPAI 225 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCC-CCCcCchhh
Confidence 999999999996 45578877654 999999999999 4889987 999999999999995 577899999
Q ss_pred cCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCcc---cccceEeeeCcCC-ccCCCCC
Q 036657 415 ENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYTAI-EEVPSSI 481 (481)
Q Consensus 415 ~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l-~~lP~si 481 (481)
+.+++|++|++++|+....+|..+. +++|++|++++|..+..+|..+ .+|++|+|++|.+ +.+|.++
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 9999999999999998999998775 9999999999999999999854 4668999997655 7788653
No 5
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.78 E-value=5.2e-20 Score=194.30 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHH-HhcCCchhhHHHHHhccccCchhhHHHhh--------
Q 036657 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNN-LKLISEPSIYKVLKISYDELNSEVKEIFI-------- 177 (481)
Q Consensus 107 ~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~-l~~~~~~~i~~~L~lSYd~L~~~~K~cFl-------- 177 (481)
+++++++++|+++|+|+||||+++|+.|+.++. +|...+.. ++..+..+|.++|++||++||+++|.||+
T Consensus 313 ~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~ 391 (549)
T 2a5y_B 313 EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRS 391 (549)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHH
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhh
Confidence 578999999999999999999999999987742 33333433 44446778999999999999999999999
Q ss_pred ---hhccCCCCCCHHHHHHHhcC--CCc-----------ccccHHHHhhCcceeecCC---CceehhHHHHHHHHHHhhc
Q 036657 178 ---DIACFFKGEDIDFMTRIHDD--PMS-----------IHDGLNILVSKSLITISDE---NELQMHDLLQEMGQTIVRQ 238 (481)
Q Consensus 178 ---~~a~Fp~~~~~~~l~~~~~~--~~~-----------~~~~~~~L~~r~li~~~~~---~~~~mHdll~d~~~~i~~~ 238 (481)
|||+||+++.++ +..|.++ ||. +..+|++|++|||++.... .+|+|||++|++|++++.+
T Consensus 392 l~~~ls~fp~~~~i~-i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 392 ALAFAVVMPPGVDIP-VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp HTTGGGSSCTTCCEE-HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HhhheeeeCCCCeee-eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 999999999988 4444444 421 1237999999999998642 4699999999999999987
Q ss_pred ccc
Q 036657 239 ESA 241 (481)
Q Consensus 239 e~~ 241 (481)
++.
T Consensus 471 ~~~ 473 (549)
T 2a5y_B 471 QTI 473 (549)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.7e-17 Score=170.37 Aligned_cols=184 Identities=17% Similarity=0.227 Sum_probs=116.4
Q ss_pred ccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCc
Q 036657 283 HLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKV 360 (481)
Q Consensus 283 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i 360 (481)
.+.+..|.++++|+.|++++|.+ ....+..+..++ +|++|++++|.++.+|.. |. +.+|++|+|++|.+
T Consensus 78 ~~~~~~~~~l~~L~~L~Ls~n~i--------~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 78 IIKVNSFKHLRHLEILQLSRNHI--------RTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp EECTTTTSSCSSCCEEECCSSCC--------CEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred eeCHHHhhCCCCCCEEECCCCcC--------CccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 34456677777777777777763 223335566666 777777777777777664 44 77777777777777
Q ss_pred ccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCC-C
Q 036657 361 EQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFP-R 436 (481)
Q Consensus 361 ~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp-~ 436 (481)
..+|. .+..+++|++|++++|..+..+|. +.++++|++|++++| .+..+| .+..+++|+.|+++++ .+..++ .
T Consensus 149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~ 225 (440)
T 3zyj_A 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPG 225 (440)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTT
T ss_pred cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChh
Confidence 76655 366677777777777656666665 666777777777764 455565 4666667777777653 455553 3
Q ss_pred CC-CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccCCC
Q 036657 437 GI-HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 437 ~~-~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~ 479 (481)
.+ ++++|+.|++++|. +..++. .+.+|+.|+|++|+|+.+|.
T Consensus 226 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp TTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred hhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 33 36666666666643 555443 13455666666666666654
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.5e-17 Score=171.42 Aligned_cols=184 Identities=17% Similarity=0.212 Sum_probs=106.5
Q ss_pred ccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCc
Q 036657 283 HLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKV 360 (481)
Q Consensus 283 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i 360 (481)
.+.+..|.++++|+.|++++|.+ ....+..+..++ +|++|++++|.++.+|.. |. +.+|++|+|++|.+
T Consensus 89 ~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 89 MIQADTFRHLHHLEVLQLGRNSI--------RQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCC--------CEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred eECHHHcCCCCCCCEEECCCCcc--------CCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 34556677777777777777763 333345666666 777777777777777665 44 67777777777777
Q ss_pred ccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCC-C
Q 036657 361 EQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFP-R 436 (481)
Q Consensus 361 ~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp-~ 436 (481)
..+|. .+..+++|++|++++|..+..+|. +.++++|++|++++| .+..+| .+..+++|+.|+++++ .+..++ .
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~ 236 (452)
T 3zyi_A 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGN-HFPEIRPG 236 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTS-CCSEECGG
T ss_pred ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccccccEEECcCC-cCcccCcc
Confidence 76655 355666666666666555555554 556666666666653 344444 3555555666665542 344432 2
Q ss_pred CC-CCCCCcEEEeecCCCCCccCC-c---ccccceEeeeCcCCccCCC
Q 036657 437 GI-HFVSPITIDFSFCVNLTEFPQ-I---SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 437 ~~-~l~~L~~L~l~~c~~L~~lp~-~---~~~L~~L~L~~~~l~~lP~ 479 (481)
.+ ++++|+.|++++|. +..++. . +.+|+.|+|++|+|+.+|.
T Consensus 237 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp GGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 22 25555555555543 433322 1 2344555555555555543
No 8
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.75 E-value=3.6e-20 Score=161.84 Aligned_cols=85 Identities=15% Similarity=0.316 Sum_probs=72.9
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCchhhhh
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFPDKVQK 81 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~~~v~~ 81 (481)
+|.+||++|+++|||+|+||++|.||++||.++++|.+..+++|+||||+|+|+|||+|+|.|+++|..+..... +..
T Consensus 66 ~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~~--~~~ 143 (154)
T 3h16_A 66 SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKS--VDE 143 (154)
T ss_dssp HHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTSC--HHH
T ss_pred HHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCccc--HHH
Confidence 588999999999999999999999999999999999888889999999999999999999999998865543322 444
Q ss_pred HHHHHHH
Q 036657 82 WRDVLTE 88 (481)
Q Consensus 82 w~~al~~ 88 (481)
+-+.|.+
T Consensus 144 ia~~l~~ 150 (154)
T 3h16_A 144 IVADLMA 150 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=2.7e-18 Score=168.28 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=122.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeC-CCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYM-PKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFD 344 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~-~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~ 344 (481)
..++.+.+...........+..|.++++|++|++++ |.+ ...+|..+..++ +|++|++++|.+. .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l--------~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--------VGPIPPAIAKLT-QLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE--------ESCCCGGGGGCT-TCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc--------cccCChhHhcCC-CCCEEECcCCeeCCcCCHH
Confidence 456666555443321112346777778888888874 553 345677777777 7777777777776 56666
Q ss_pred CC-CCCceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCc-ccCC-CCCCC-CCCEEeccCCCCCcccccc------
Q 036657 345 FE-PENLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLV-RMLD-LSETP-NLERTNLLNCRDLACVRSS------ 413 (481)
Q Consensus 345 ~~-l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~-~lp~-~~~l~-~L~~L~L~~c~~l~~lp~~------ 413 (481)
+. +.+|++|++++|.+. .+|..+..+++|++|++++|. +. .+|. ++.++ +|++|++++|.....+|..
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcc
Confidence 65 777777777777777 567777777777777777774 44 5665 66665 6777776664332234444
Q ss_pred -----------------ccCCCCCCEEeeeCCCCCccCCCCC-CCCCCcEEEeecCCCCCccCCcc---cccceEeeeCc
Q 036657 414 -----------------IENFNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYT 472 (481)
Q Consensus 414 -----------------i~~L~~L~~L~l~~c~~l~~lp~~~-~l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~ 472 (481)
++.+++|+.|+++++ .+...+..+ .+++|++|++++|.-...+|..+ .+|++|+|++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 445555555555543 233222223 36677777777755222566543 34567777777
Q ss_pred CCc-cCCC
Q 036657 473 AIE-EVPS 479 (481)
Q Consensus 473 ~l~-~lP~ 479 (481)
.++ .+|.
T Consensus 279 ~l~~~ip~ 286 (313)
T 1ogq_A 279 NLCGEIPQ 286 (313)
T ss_dssp EEEEECCC
T ss_pred cccccCCC
Confidence 775 4553
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=4.6e-17 Score=157.04 Aligned_cols=194 Identities=17% Similarity=0.178 Sum_probs=157.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc-CCCCC-CC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS-LKMLP-FD 344 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~lP-~~ 344 (481)
..++.+.+..... ..+.+..|.++++|+.|++++|.+ ....|..+..++ +|++|++++|. +..++ ..
T Consensus 32 ~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l--------~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVL--------ARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCC--------CEECTTTTTTCT-TCCEEECCSCTTCCCCCTTT
T ss_pred CCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCcc--------ceeCHhhcCCcc-CCCEEeCCCCCCccccCHHH
Confidence 4566666654443 345667899999999999999884 344477888898 99999999997 88884 45
Q ss_pred CC-CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCC
Q 036657 345 FE-PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNN 419 (481)
Q Consensus 345 ~~-l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~ 419 (481)
+. +.+|++|++++|.+..+ |..+..+++|++|++++|. +..+|. ++.+++|++|++++| .+..+|.. +..+++
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHS 178 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccc
Confidence 65 89999999999999987 5568899999999999995 778875 889999999999995 56777764 889999
Q ss_pred CCEEeeeCCCCCccC-CCCCC-CCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCc
Q 036657 420 LSMLCFKGCESLRSF-PRGIH-FVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIE 475 (481)
Q Consensus 420 L~~L~l~~c~~l~~l-p~~~~-l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~ 475 (481)
|++|+++++ .+..+ |..+. +++|+.|++++|. +..+|. ...+|++|++++|.+.
T Consensus 179 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 179 LDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCEEECCCC-cccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCcc
Confidence 999999985 56665 55554 9999999999974 777774 2567899999999875
No 11
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=169.71 Aligned_cols=172 Identities=15% Similarity=0.078 Sum_probs=118.2
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~ 346 (481)
.++.+.+..+.. ..+.+..|.++++|+.|++++|.+ ....|..+..++ +|++|++++|.++.+|.. |.
T Consensus 53 ~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 53 AVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGI--------NTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHT
T ss_pred cCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCcc--------CccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhC
Confidence 455555544433 234556778888888888888774 333455677777 888888888888888776 54
Q ss_pred -CCCceEEEcCCCCcccccc--cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 036657 347 -PENLIELNLPYSKVEQIWK--GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLS 421 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~ 421 (481)
+.+|++|++++|.++.+|. .+..+++|++|++++|..+..++. ++++++|++|++++|......|..++.+++|+
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 7888888888888888876 577788888888888755666653 77888888888887654344466677777777
Q ss_pred EEeeeCCCCCccCCCCC--CCCCCcEEEeecC
Q 036657 422 MLCFKGCESLRSFPRGI--HFVSPITIDFSFC 451 (481)
Q Consensus 422 ~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c 451 (481)
+|+++++ .+..+|... .+++|+.|++++|
T Consensus 202 ~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 202 HLILHMK-QHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEECS-CSTTHHHHHHHHTTTEEEEEEESC
T ss_pred eecCCCC-ccccchhhhhhhcccccEEECCCC
Confidence 7777753 455554432 2556666666654
No 12
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2.5e-17 Score=161.02 Aligned_cols=192 Identities=14% Similarity=0.164 Sum_probs=155.7
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+....... + ..+..+++|+.|++++|.+ ..++. +..++ +|++|++++|.++.+|....
T Consensus 41 ~~L~~L~l~~~~i~~--l--~~~~~l~~L~~L~L~~n~i---------~~~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~ 105 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT--I--EGVQYLNNLIGLELKDNQI---------TDLAP-LKNLT-KITELELSGNPLKNVSAIAG 105 (308)
T ss_dssp HTCCEEECTTSCCCC--C--TTGGGCTTCCEEECCSSCC---------CCCGG-GTTCC-SCCEEECCSCCCSCCGGGTT
T ss_pred CCcCEEEeeCCCccC--c--hhhhccCCCCEEEccCCcC---------CCChh-HccCC-CCCEEEccCCcCCCchhhcC
Confidence 345566555443322 2 2588899999999999883 44555 88888 99999999999999875445
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
+.+|++|++++|+++.++. +..+++|++|++++| .+..+|.++.+++|++|++++| .+..++. +..+++|+.|+++
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKAD 181 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECC
Confidence 9999999999999998875 899999999999999 4888888999999999999996 5677776 8999999999999
Q ss_pred CCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccCCC
Q 036657 427 GCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 427 ~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP~ 479 (481)
+ +.+..++....+++|+.|++++|. +..+|. .+.+|+.|++++|.++..|.
T Consensus 182 ~-n~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 182 D-NKISDISPLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp S-SCCCCCGGGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred C-CccCcChhhcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCeeecCCe
Confidence 7 478888764459999999999975 777775 25578999999999987664
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=1.1e-17 Score=164.05 Aligned_cols=180 Identities=16% Similarity=0.193 Sum_probs=122.1
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CC-CceEEEcCCCCcc-
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PE-NLIELNLPYSKVE- 361 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~-~L~~L~L~~~~i~- 361 (481)
+..|.++++|++|++++|.+ ...+|..+..++ +|++|++++|.+. .+|..+. +. +|++|++++|.+.
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l--------~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNAL--------SGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEE--------ESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred CHHHhCCCCCCEEeCCCCcc--------CCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence 44555566666666665552 224555666666 6666666666665 5555544 44 6666666666665
Q ss_pred cccccccCCCCCcEEeccCCCCCc-ccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCc-cCCCCC
Q 036657 362 QIWKGEKKAFKLKYIDISHSQQLV-RMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLR-SFPRGI 438 (481)
Q Consensus 362 ~lp~~~~~L~~L~~L~Ls~~~~l~-~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~-~lp~~~ 438 (481)
.+|..+..+. |++|++++|. +. ..|. ++.+++|++|++++|. +...++.++.+++|++|+++++ .+. .+|..+
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l 264 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGL 264 (313)
T ss_dssp ECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSS-CCEECCCGGG
T ss_pred cCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCC-cccCcCChHH
Confidence 4555566665 7777777664 44 3444 8889999999999854 4444556889999999999985 555 778777
Q ss_pred C-CCCCcEEEeecCCCCCccCCc--ccccceEeeeCcC-CccCC
Q 036657 439 H-FVSPITIDFSFCVNLTEFPQI--SGNIIELKLWYTA-IEEVP 478 (481)
Q Consensus 439 ~-l~~L~~L~l~~c~~L~~lp~~--~~~L~~L~L~~~~-l~~lP 478 (481)
. +++|+.|++++|.--..+|.. +.+|+.|++++|. +...|
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 4 999999999997644478874 5567889999887 44444
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=2e-17 Score=161.29 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=89.0
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC--CCC-CCCceEEEcCCCCcccc-
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF--DFE-PENLIELNLPYSKVEQI- 363 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~--~~~-l~~L~~L~L~~~~i~~l- 363 (481)
.+..+++|+.|++++|. ...+|..+..++ +|++|++++|.++.+|. .+. +.+|++|++++|.+...
T Consensus 73 ~~~~~~~L~~L~Ls~n~---------i~~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNG---------VITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp HHHSCSCCCEEECCSCS---------EEEEEEEEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred ccccccccCEEECCCCc---------cccChhhcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 33344444555544444 234444455555 56666666655555543 233 55666666666655533
Q ss_pred cccccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCCCC-C
Q 036657 364 WKGEKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFPRG-I 438 (481)
Q Consensus 364 p~~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~-~ 438 (481)
+..+..+++|++|++++|. +.. +|. +..+++|++|++++|. +..+ |..++.+++|++|++++ +.+..++.. +
T Consensus 143 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~ 219 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPY 219 (306)
T ss_dssp TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT-SCCSBCCSGGG
T ss_pred hhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCC-CccCccChhhc
Confidence 3335555666666666553 332 444 5556666666666543 3333 44555566666666664 344444432 2
Q ss_pred -CCCCCcEEEeecCCCCCc-cCCc----ccccceEeeeCcCCc
Q 036657 439 -HFVSPITIDFSFCVNLTE-FPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 439 -~l~~L~~L~l~~c~~L~~-lp~~----~~~L~~L~L~~~~l~ 475 (481)
.+++|+.|++++|. +.. .|.. ..+|++|+|++|.+.
T Consensus 220 ~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 220 KCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCCee
Confidence 25666666666654 332 2221 134556666666554
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=1e-16 Score=161.71 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=60.6
Q ss_pred CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCc---ccccc
Q 036657 390 LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQI---SGNII 465 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~---~~~L~ 465 (481)
++.+++|++|++++|......|..++.+++|+.|++++ +.+..+|.... +++|++|++++|. +..+|.. +.+|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCC
Confidence 44556677777776543333466677788888888876 46777776553 7888888888864 7777764 35678
Q ss_pred eEeeeCcCCccCCC
Q 036657 466 ELKLWYTAIEEVPS 479 (481)
Q Consensus 466 ~L~L~~~~l~~lP~ 479 (481)
+|++++|.|+.+|.
T Consensus 322 ~L~L~~N~i~~~~~ 335 (390)
T 3o6n_A 322 NLYLDHNSIVTLKL 335 (390)
T ss_dssp EEECCSSCCCCCCC
T ss_pred EEECCCCccceeCc
Confidence 88888888877663
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=2e-16 Score=163.93 Aligned_cols=177 Identities=19% Similarity=0.281 Sum_probs=117.0
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~ 346 (481)
.++.+.+..+. ...+.+..|.++++|+.|++++|.+ ....|..+..++ +|++|++++|.++.+|.. |.
T Consensus 33 ~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 33 ETRLLDLGKNR--IKTLNQDEFASFPHLEELELNENIV--------SAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp TCSEEECCSSC--CCEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTCT-TCCEEECCSSCCCSCCTTSST
T ss_pred CCcEEECCCCc--cceECHhHccCCCCCCEEECCCCcc--------CEeChhhhhCCc-cCCEEECCCCcCCccCccccc
Confidence 44555444333 3345567788888888888888874 344577788888 888888888888888875 44
Q ss_pred -CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCC
Q 036657 347 -PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLS 421 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~ 421 (481)
+.+|++|+|++|.+..+ |..+..+++|++|++++|. +..++. ++++++|++|++++| .+..+|. .+.++++|+
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLI 179 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCC
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCc
Confidence 88888888888888766 4457788888888888874 555543 778888888888875 3444443 356666666
Q ss_pred EEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccC
Q 036657 422 MLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFP 458 (481)
Q Consensus 422 ~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp 458 (481)
.|+++++ .+..++. .+ .+++|+.|++++|..+..+|
T Consensus 180 ~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 180 VLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp EEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred EEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccC
Confidence 6666653 3444433 22 25555555555554444444
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=1.9e-16 Score=156.12 Aligned_cols=181 Identities=22% Similarity=0.253 Sum_probs=116.9
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI 363 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l 363 (481)
+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.++.+|..+. .+|++|++++|.+..+
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~ 136 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNKI--------SKISPGAFAPLV-KLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKV 136 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSCC--------CCBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBB
T ss_pred eChhhhccCCCCCEEECCCCcC--------CeeCHHHhcCCC-CCCEEECCCCcCCccChhhc-ccccEEECCCCccccc
Confidence 4445566677777777776663 223355666666 66666666666666665543 4555555555555544
Q ss_pred cc---------------------------cccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccc-cccc
Q 036657 364 WK---------------------------GEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACV-RSSI 414 (481)
Q Consensus 364 p~---------------------------~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~l-p~~i 414 (481)
+. .+..+++|++|++++|. +..+|. +. ++|++|++++|. +..+ |..+
T Consensus 137 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~ 212 (330)
T 1xku_A 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNK-ITKVDAASL 212 (330)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSC-CCEECTGGG
T ss_pred CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCc-CCccCHHHh
Confidence 33 34445555555555552 444544 21 566677777654 3333 5678
Q ss_pred cCCCCCCEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccCCcc---cccceEeeeCcCCccCCCC
Q 036657 415 ENFNNLSMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 415 ~~L~~L~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l~~lP~s 480 (481)
+.+++|+.|++++ +.+..++. .+ .+++|++|++++|. +..+|..+ .+|++|++++|.|+.+|..
T Consensus 213 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 213 KGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp TTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChh
Confidence 8889999999997 46776665 34 48999999999974 88888754 4678999999999988763
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=1.4e-16 Score=160.84 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=46.0
Q ss_pred cccCCCCCCEEeeeCCCCCccC-CCCC-CCCCCcEEEeecCCCCCccCCc---ccccceEeeeCcCCccCCCC
Q 036657 413 SIENFNNLSMLCFKGCESLRSF-PRGI-HFVSPITIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 413 ~i~~L~~L~~L~l~~c~~l~~l-p~~~-~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
.++.+++|++|+++++ .+..+ |..+ ++++|++|++++|. +..+|.. +++|++|+|++|.++.+|..
T Consensus 243 ~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 313 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERN 313 (390)
T ss_dssp GGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred HHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCcc
Confidence 4566777777777764 45544 4444 38888888888854 7777763 45678888888888877753
No 19
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=8e-17 Score=151.27 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=88.3
Q ss_pred ChHhhccCCCCcEEEEeCCCCCCCcccCcceecC-Cccccccccccceeecc-ccCCCCCCC-CC-CCCceEEEcCCCCc
Q 036657 285 NPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHE-YSLKMLPFD-FE-PENLIELNLPYSKV 360 (481)
Q Consensus 285 ~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~-~~l~~lP~~-~~-l~~L~~L~L~~~~i 360 (481)
.+..|.++++|+.|++++|.. ...++ ..+..++ +|++|++++ +.++.+|.. |. +.+|++|++++|.+
T Consensus 47 ~~~~~~~l~~L~~L~l~~n~~--------l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 47 PSHAFSNLPNISRIYVSIDVT--------LQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp CTTTTTTCTTCCEEEEECCSS--------CCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC
T ss_pred CHHHccCCCCCcEEeCCCCCC--------cceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence 344555555555555555530 12222 2445555 555555555 555555543 22 55555555555555
Q ss_pred ccccccccCCCCCc---EEeccCCCCCcccCC--CCCCCCCC-EEeccCCCCCccccccccCCCCCCEEeeeCCCCCccC
Q 036657 361 EQIWKGEKKAFKLK---YIDISHSQQLVRMLD--LSETPNLE-RTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSF 434 (481)
Q Consensus 361 ~~lp~~~~~L~~L~---~L~Ls~~~~l~~lp~--~~~l~~L~-~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~l 434 (481)
+.+|. +..+++|+ +|++++|..+..+|. +.++++|+ +|+++++ .+..+|......++|+.|+++++..++.+
T Consensus 118 ~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 118 KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEE
T ss_pred ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccC
Confidence 55554 44455554 555555533555554 55555555 5555552 34455544333355555555553335555
Q ss_pred CCCC--CC-CCCcEEEeecCCCCCccCC-cccccceEeeeC
Q 036657 435 PRGI--HF-VSPITIDFSFCVNLTEFPQ-ISGNIIELKLWY 471 (481)
Q Consensus 435 p~~~--~l-~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~~ 471 (481)
|... ++ ++|+.|+++++ .+..+|. .+.+|+.|++++
T Consensus 196 ~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 196 DKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARN 235 (239)
T ss_dssp CTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTT
T ss_pred CHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccC
Confidence 4322 24 55555555553 3555554 244555555543
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=2.3e-16 Score=152.81 Aligned_cols=169 Identities=16% Similarity=0.083 Sum_probs=97.7
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFK 372 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 372 (481)
++|+.|++++|.+ ....+..+..++ +|++|++++|.++.+|....+.+|++|++++|.+..+|..+..+++
T Consensus 31 ~~l~~L~L~~N~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENLL--------YTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSCC--------SEEEGGGGTTCT-TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTT
T ss_pred CCCCEEEcCCCcC--------CccCHHHhhcCC-CCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCC
Confidence 4566666666653 233344555555 6666666666666665554466666666666666666666666666
Q ss_pred CcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEE
Q 036657 373 LKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGI--HFVSPITID 447 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~ 447 (481)
|++|++++|. +..+|. |..+++|++|++++| .+..+|.. +..+++|+.|++++ +.++.+|... ++++|+.|+
T Consensus 102 L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 102 LTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEE
Confidence 6666666663 555553 566666666666663 34444433 45566666666664 4566666543 266666666
Q ss_pred eecCCCCCccCCcc---cccceEeeeCcCC
Q 036657 448 FSFCVNLTEFPQIS---GNIIELKLWYTAI 474 (481)
Q Consensus 448 l~~c~~L~~lp~~~---~~L~~L~L~~~~l 474 (481)
++++. +..+|..+ .+|+.|+|++|.+
T Consensus 179 L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 179 LQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence 66643 56666532 2345666665554
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=2e-16 Score=153.28 Aligned_cols=176 Identities=20% Similarity=0.258 Sum_probs=150.4
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~ 366 (481)
+.++++|+.+++.++. ...+|..+ +.++++|++++|.+..++. .|. +.+|++|++++|.++.++..
T Consensus 6 ~~~l~~l~~l~~~~~~---------l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN---------LTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73 (290)
T ss_dssp EECSTTCCEEECTTSC---------CSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC
T ss_pred ccccCCccEEECCCCC---------CCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC
Confidence 5678899999999887 45677654 3499999999999998864 455 99999999999999998875
Q ss_pred ccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEeeeCCCCCccCCCCC--CCCC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVR-SSIENFNNLSMLCFKGCESLRSFPRGI--HFVS 442 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~ 442 (481)
..+++|++|++++| .+..+|. +..+++|++|+++++ .+..+| ..++.+++|++|++++ +.+..+|... .+++
T Consensus 74 -~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPK 149 (290)
T ss_dssp -SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTT
T ss_pred -CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccC
Confidence 88999999999999 4889998 889999999999995 567776 5589999999999997 5788888764 4999
Q ss_pred CcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCCCC
Q 036657 443 PITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPSSI 481 (481)
Q Consensus 443 L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~si 481 (481)
|+.|+++++ ++..+|.. +.+|+.|+|++|.|+.+|.++
T Consensus 150 L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 150 LEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp CCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 999999996 48899863 467899999999999999763
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.7e-16 Score=169.31 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=59.8
Q ss_pred CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCc---ccccc
Q 036657 390 LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQI---SGNII 465 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~---~~~L~ 465 (481)
++.+++|++|++++|......|..++.+++|+.|++++ +.+..+|.... +++|+.|++++|. +..+|.. +.+|+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLE 327 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCC
Confidence 44566677777776544344466677777788888776 46777776654 7788888888764 6677764 34667
Q ss_pred eEeeeCcCCccCCC
Q 036657 466 ELKLWYTAIEEVPS 479 (481)
Q Consensus 466 ~L~L~~~~l~~lP~ 479 (481)
.|+|++|.|..+|.
T Consensus 328 ~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 328 NLYLDHNSIVTLKL 341 (597)
T ss_dssp EEECCSSCCCCCCC
T ss_pred EEECCCCCCCCcCh
Confidence 88888877776653
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.4e-16 Score=169.87 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=103.4
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVE 361 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~ 361 (481)
+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.+..+|+. |. +.+|++|+|++|.+.
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCHHHHccCCCCcEEECCCCCC--------CCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 3444455555555555555542 222223444454 555555555555554443 22 555555555555555
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccc----------------------------
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACV---------------------------- 410 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~l---------------------------- 410 (481)
.+|.. +..+++|++|++++|. +..+|. ++.+++|++|++++|. +..+
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~ 214 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE 214 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCS
T ss_pred CCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhh
Confidence 55444 2455555555555552 333332 4555555555554432 1111
Q ss_pred --------------------------------cccccCCCCCCEEeeeCCCCCccC-CCCC-CCCCCcEEEeecCCCCCc
Q 036657 411 --------------------------------RSSIENFNNLSMLCFKGCESLRSF-PRGI-HFVSPITIDFSFCVNLTE 456 (481)
Q Consensus 411 --------------------------------p~~i~~L~~L~~L~l~~c~~l~~l-p~~~-~l~~L~~L~l~~c~~L~~ 456 (481)
+..++.+++|+.|++++| .+..+ |..+ ++++|+.|++++|. +..
T Consensus 215 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 292 (597)
T 3oja_B 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVA 292 (597)
T ss_dssp EEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSC-CCE
T ss_pred eeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCC-CCC
Confidence 234667778888888864 45444 4445 48888888888854 777
Q ss_pred cCCc---ccccceEeeeCcCCccCCCC
Q 036657 457 FPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 457 lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
+|.. +++|+.|+|++|.++.+|.+
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~~i~~~ 319 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLLHVERN 319 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred CCcccccCCCCcEEECCCCCCCccCcc
Confidence 7764 45778999999888888764
No 24
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=8.1e-17 Score=157.37 Aligned_cols=173 Identities=16% Similarity=0.232 Sum_probs=148.8
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGE 367 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~ 367 (481)
+..+++|+.|++.++. ...+| .+..++ +|++|++++|.+..+|. +. +.+|++|++++|.++.++ .+
T Consensus 37 ~~~l~~L~~L~l~~~~---------i~~l~-~~~~l~-~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG---------VTTIE-GVQYLN-NLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI 103 (308)
T ss_dssp HHHHHTCCEEECTTSC---------CCCCT-TGGGCT-TCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG
T ss_pred HHHcCCcCEEEeeCCC---------ccCch-hhhccC-CCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh
Confidence 4567899999999887 34455 578888 99999999999999988 55 999999999999999886 68
Q ss_pred cCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEE
Q 036657 368 KKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITID 447 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~ 447 (481)
..+++|++|++++|. +..+|.++.+++|++|++++| .+..++. ++.+++|++|++++| .+..++...++++|+.|+
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~ 179 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLK 179 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEE
T ss_pred cCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEE
Confidence 999999999999995 888888999999999999995 5667765 899999999999975 788887744699999999
Q ss_pred eecCCCCCccCC--cccccceEeeeCcCCccCCC
Q 036657 448 FSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 448 l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP~ 479 (481)
+++|. +..+|. .+.+|++|+|++|.++.+|+
T Consensus 180 l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 180 ADDNK-ISDISPLASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp CCSSC-CCCCGGGGGCTTCCEEECTTSCCCBCGG
T ss_pred CCCCc-cCcChhhcCCCCCCEEEccCCccCcccc
Confidence 99975 888776 35688999999999988763
No 25
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=6.1e-17 Score=156.94 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=104.1
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccC
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKK 369 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~ 369 (481)
..+++|+.|++.+|.+ ..++ .+..++ +|++|++++|.++.+|....+.+|++|++++|.++.+|. +..
T Consensus 43 ~~l~~L~~L~l~~~~i---------~~~~-~~~~l~-~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 43 NELNSIDQIIANNSDI---------KSVQ-GIQYLP-NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKD 110 (291)
T ss_dssp HHHHTCCEEECTTSCC---------CCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred hhcCcccEEEccCCCc---------ccCh-hHhcCC-CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hcc
Confidence 3456666666666652 2333 355566 677777776666666652226667777777766666543 666
Q ss_pred CCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEee
Q 036657 370 AFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFS 449 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~ 449 (481)
+++|++|++++| .+..++.+..+++|++|++++| .+..+ ..++.+++|++|++++| .+..++....+++|+.|+++
T Consensus 111 l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 111 LKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLS 186 (291)
T ss_dssp CTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECC
T ss_pred CCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEECC
Confidence 667777777766 3666666666667777777664 34444 35666667777777653 55555553346667777776
Q ss_pred cCCCCCccCCc--ccccceEeeeCcCCccCC
Q 036657 450 FCVNLTEFPQI--SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 450 ~c~~L~~lp~~--~~~L~~L~L~~~~l~~lP 478 (481)
+|. +..+|.. +.+|+.|++++|.+...|
T Consensus 187 ~N~-i~~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 187 KNH-ISDLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp SSC-CCBCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred CCc-CCCChhhccCCCCCEEECcCCcccCCc
Confidence 653 6666542 345566677666665544
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=3.5e-16 Score=160.52 Aligned_cols=194 Identities=18% Similarity=0.286 Sum_probs=158.6
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD 344 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~ 344 (481)
...++.+.+..+. ...+.+..|.++++|+.|++++|.+ ..+|. .+..++ +|++|++++|.+..+|..
T Consensus 87 l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~ 154 (440)
T 3zyj_A 87 LRHLEILQLSRNH--IRTIEIGAFNGLANLNTLELFDNRL---------TTIPNGAFVYLS-KLKELWLRNNPIESIPSY 154 (440)
T ss_dssp CSSCCEEECCSSC--CCEECGGGGTTCSSCCEEECCSSCC---------SSCCTTTSCSCS-SCCEEECCSCCCCEECTT
T ss_pred CCCCCEEECCCCc--CCccChhhccCCccCCEEECCCCcC---------CeeCHhHhhccc-cCceeeCCCCcccccCHH
Confidence 3456666555443 3346678999999999999999984 44554 688888 999999999999999885
Q ss_pred -CC-CCCceEEEcCC-CCcccccc-cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccc-cccccCCCC
Q 036657 345 -FE-PENLIELNLPY-SKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACV-RSSIENFNN 419 (481)
Q Consensus 345 -~~-l~~L~~L~L~~-~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~ 419 (481)
|. +.+|++|++++ +.+..++. .+..+++|++|++++| .+..+|.+..+++|++|++++|. +..+ |..+..+++
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMH 232 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccChhhhccCcc
Confidence 55 99999999998 56777766 4889999999999999 59999999999999999999964 5554 678999999
Q ss_pred CCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCc
Q 036657 420 LSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 420 L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~ 475 (481)
|+.|++++ +.+..++.. + ++++|+.|+|++| ++..+|.. +.+|+.|+|++|.+.
T Consensus 233 L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCcc
Confidence 99999997 467777653 4 4999999999996 48888862 467899999988764
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=2.9e-16 Score=154.97 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=106.0
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI 363 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l 363 (481)
+.+..|.++++|+.|++++|.+ ....|..+..++ +|++|++++|.++.+|..+. .+|++|++++|.+..+
T Consensus 69 ~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~ 138 (332)
T 2ft3_A 69 LRKDDFKGLQHLYALVLVNNKI--------SKIHEKAFSPLR-KLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKV 138 (332)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC--------CEECGGGSTTCT-TCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCC
T ss_pred cCHhHhhCCCCCcEEECCCCcc--------CccCHhHhhCcC-CCCEEECCCCcCCccCcccc-ccCCEEECCCCccCcc
Confidence 4455667777777777776663 333355666666 67777777777766666554 6666777776666666
Q ss_pred ccc-ccCCCCCcEEeccCCCCCcc---cCC-CCCC--------------------CCCCEEeccCCCCCcccc-ccccCC
Q 036657 364 WKG-EKKAFKLKYIDISHSQQLVR---MLD-LSET--------------------PNLERTNLLNCRDLACVR-SSIENF 417 (481)
Q Consensus 364 p~~-~~~L~~L~~L~Ls~~~~l~~---lp~-~~~l--------------------~~L~~L~L~~c~~l~~lp-~~i~~L 417 (481)
|.. +..+++|++|++++|. +.. .|. +..+ ++|++|++++|. +..++ ..+..+
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l 216 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRY 216 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTC
T ss_pred CHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCccCHHHhcCC
Confidence 543 5666666666666663 321 121 2222 344555555432 23332 456666
Q ss_pred CCCCEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccCCcc---cccceEeeeCcCCccCCC
Q 036657 418 NNLSMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 418 ~~L~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l~~lP~ 479 (481)
++|++|++++ +.+..++. .+ .+++|+.|++++|. +..+|..+ .+|+.|++++|.|+.+|.
T Consensus 217 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 217 SKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp TTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccCh
Confidence 6667777665 35555554 23 36677777777653 66666643 345667777777766654
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=3.5e-16 Score=161.09 Aligned_cols=195 Identities=21% Similarity=0.317 Sum_probs=159.0
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD 344 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~ 344 (481)
...++.+.+..+.. ..+.+..|.++++|+.|++++|.+ ..+|. .+..++ +|++|++++|.+..+|..
T Consensus 98 l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~ 165 (452)
T 3zyi_A 98 LHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWL---------TVIPSGAFEYLS-KLRELWLRNNPIESIPSY 165 (452)
T ss_dssp CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCC---------SBCCTTTSSSCT-TCCEEECCSCCCCEECTT
T ss_pred CCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcC---------CccChhhhcccC-CCCEEECCCCCcceeCHh
Confidence 45566666654433 345678899999999999999984 34554 578888 999999999999999885
Q ss_pred -CC-CCCceEEEcCC-CCccccccc-ccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCC
Q 036657 345 -FE-PENLIELNLPY-SKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNL 420 (481)
Q Consensus 345 -~~-l~~L~~L~L~~-~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L 420 (481)
|. +.+|++|++++ +.+..++.. +..+++|++|++++| .+..+|.+..+++|++|++++|......|..+.++++|
T Consensus 166 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCccCC
Confidence 55 99999999998 577788764 889999999999999 59999999999999999999965444457789999999
Q ss_pred CEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCc
Q 036657 421 SMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~ 475 (481)
+.|+++++ .+..++. .+ ++++|+.|++++| ++..+|.. +.+|+.|+|++|.+.
T Consensus 245 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 245 KKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcC
Confidence 99999974 6666654 44 4999999999997 58888862 467899999998764
No 29
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=8.1e-17 Score=157.97 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=98.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..+.. ..+.+..|.++++|+.|++++|.+ ...+. +..++ +|++|++++|.++.+|..
T Consensus 34 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~-~~~l~-~L~~L~Ls~n~l~~l~~~-- 98 (317)
T 3o53_A 34 WNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL---------YETLD-LESLS-TLRTLDLNNNYVQELLVG-- 98 (317)
T ss_dssp GGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCC---------EEEEE-ETTCT-TCCEEECCSSEEEEEEEC--
T ss_pred CCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcC---------Ccchh-hhhcC-CCCEEECcCCccccccCC--
Confidence 3555555554432 335567788888888888888773 22222 66666 777777777776665532
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccc-cCCCCCCEE
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSI-ENFNNLSML 423 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i-~~L~~L~~L 423 (481)
.+|++|++++|.+..++.. .+++|++|++++|. +..++. ++.+++|++|++++|......|..+ +.+++|++|
T Consensus 99 -~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 99 -PSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp -TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred -CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 4555555555555544332 24455555555552 444432 4445555555555532211122222 244555555
Q ss_pred eeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCc---ccccceEeeeCcCCccCCC
Q 036657 424 CFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 424 ~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~ 479 (481)
++++ +.++.+|....+++|++|++++|. +..+|.. ..+|+.|+|++|.|+.+|.
T Consensus 175 ~L~~-N~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 175 NLQY-NFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp ECTT-SCCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred ECCC-CcCcccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhh
Confidence 5554 234444443334555555555532 4444432 2234455555555544443
No 30
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=9.6e-16 Score=146.71 Aligned_cols=169 Identities=18% Similarity=0.250 Sum_probs=108.4
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecC-CccccccccccceeeccccCCCCCCCC-C-CCCceEEEcCCCCccccccc-cc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHEYSLKMLPFDF-E-PENLIELNLPYSKVEQIWKG-EK 368 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~-l~~L~~L~L~~~~i~~lp~~-~~ 368 (481)
.+|+.|++++|.+ ..++ ..+..++ +|++|++++|.++.+|..+ . +.+|++|++++|.+..+|.. +.
T Consensus 37 ~~l~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 37 ADTKKLDLQSNKL---------SSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp TTCSEEECCSSCC---------SCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEECcCCCC---------CeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 4577777776663 2333 3566666 7777777777777776653 3 67777777777777766554 46
Q ss_pred CCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCC-C-CCCCC
Q 036657 369 KAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRG-I-HFVSP 443 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L 443 (481)
.+++|++|++++|. +..+|. ++.+++|++|++++| .+..+|.. ++.+++|+.|++++ +.+..+|.. + ++++|
T Consensus 107 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 107 QLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp TCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred cccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCc
Confidence 67777777777763 666654 667777777777774 45555544 56677777777775 356666653 3 36777
Q ss_pred cEEEeecCCCCCccCCc----ccccceEeeeCcCCc
Q 036657 444 ITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 444 ~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~ 475 (481)
++|++++| .+..+|.. +.+|+.|+|++|.+.
T Consensus 184 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 184 KTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCC-cCCcCCHHHhccccCCCEEEecCCCee
Confidence 77777775 36666652 345667777766653
No 31
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=3.1e-16 Score=150.48 Aligned_cols=195 Identities=14% Similarity=0.177 Sum_probs=149.8
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~ 346 (481)
.++.+.+.... ...+.+..|.++++|+.|++++|.+ ....+..+..++ +|++|++++|.++.+|.. |.
T Consensus 29 ~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 29 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCC--------CEECTTTTTTCT-TCCEEECTTCCCCEECTTTTT
T ss_pred CccEEECCCCc--ccccCHhHhccccCCcEEECCCCcC--------CccCHHHccCCc-CCCEEECCCCccCccChhhhc
Confidence 45655554433 3345566888999999999999884 333445788888 999999999999888754 55
Q ss_pred -CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCcccc-ccccCCCCC
Q 036657 347 -PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVR-SSIENFNNL 420 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L 420 (481)
+.+|++|++++|.+..++. .+..+++|++|++++|. +.. +|. ++.+++|++|++++|. +..++ ..+..+++|
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 175 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTC
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhc
Confidence 8999999999999998866 58899999999999985 665 565 8899999999999964 55544 456666666
Q ss_pred C----EEeeeCCCCCccCCCCC-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccC
Q 036657 421 S----MLCFKGCESLRSFPRGI-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEV 477 (481)
Q Consensus 421 ~----~L~l~~c~~l~~lp~~~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~l 477 (481)
+ .|++++ +.+..+|... ...+|+.|++++|. +..+|.. ..+|+.|+|++|.+...
T Consensus 176 ~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 176 PLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccceeeecCC-CcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccccc
Confidence 6 889986 5777877655 46689999999965 8888863 45778999999988643
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.7e-16 Score=149.09 Aligned_cols=176 Identities=14% Similarity=0.107 Sum_probs=150.8
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeecccc-CCCCCCC-CC-CCCceEEEcCC-CCcccccc-c
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYS-LKMLPFD-FE-PENLIELNLPY-SKVEQIWK-G 366 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~-l~~lP~~-~~-l~~L~~L~L~~-~~i~~lp~-~ 366 (481)
.+|+.|++++|.+ ..+|. .+..++ +|++|++++|. ++.+|.. |. +.+|++|++++ |.++.+|. .
T Consensus 31 ~~l~~L~l~~n~l---------~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHL---------RTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCCC---------SEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CcccEEEEeCCcc---------eEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4899999999984 44554 788888 99999999997 9999874 54 89999999998 99999875 5
Q ss_pred ccCCCCCcEEeccCCCCCcccCCCCCCCCCC---EEeccCCCCCcccccc-ccCCCCCC-EEeeeCCCCCccCCCCC-CC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLDLSETPNLE---RTNLLNCRDLACVRSS-IENFNNLS-MLCFKGCESLRSFPRGI-HF 440 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~---~L~L~~c~~l~~lp~~-i~~L~~L~-~L~l~~c~~l~~lp~~~-~l 440 (481)
+..+++|++|++++|. +..+|+++.+++|+ +|+++++..+..+|.. ++.+++|+ .|++++ +.++.+|... ..
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG 178 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT
T ss_pred hCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC
Confidence 7899999999999995 88899999999999 9999997578888765 88999999 999997 5788888754 46
Q ss_pred CCCcEEEeecCCCCCccCCc----c-cccceEeeeCcCCccCCCC
Q 036657 441 VSPITIDFSFCVNLTEFPQI----S-GNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 441 ~~L~~L~l~~c~~L~~lp~~----~-~~L~~L~L~~~~l~~lP~s 480 (481)
++|+.|++++|..+..+|.. . .+|+.|++++|.++.+|..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 89999999998668888752 3 6889999999999999874
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=8.5e-17 Score=167.27 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=118.4
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..+.. ..+.+..|.++++|++|++++|.+ ....| +..++ +|++|++++|.++.+|..
T Consensus 34 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l--------~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~~-- 98 (487)
T 3oja_A 34 WNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL--------YETLD--LESLS-TLRTLDLNNNYVQELLVG-- 98 (487)
T ss_dssp GGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCC--------EEEEE--CTTCT-TCCEEECCSSEEEEEEEC--
T ss_pred CCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCC--------CCCcc--cccCC-CCCEEEecCCcCCCCCCC--
Confidence 3566666654433 345677889999999999998874 22233 77777 888888888888777643
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccccc-CCCCCCEE
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIE-NFNNLSML 423 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L 423 (481)
.+|++|++++|.+..++.. .+++|++|++++|. +..++. ++.+++|++|++++|......|..+. .+++|++|
T Consensus 99 -~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 99 -PSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp -TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred -CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 5666666666666655442 35666666666663 444432 55666666666666433333444443 56666666
Q ss_pred eeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCc---ccccceEeeeCcCCccCCCC
Q 036657 424 CFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 424 ~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
++++ +.+..+|....+++|+.|++++|. +..+|.. +.+|+.|+|++|.|+.+|.+
T Consensus 175 ~Ls~-N~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 175 NLQY-NFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp ECTT-SCCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred ecCC-CccccccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchh
Confidence 6665 345555554456666666666643 5555543 23456666666666666543
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=1.9e-17 Score=177.90 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=93.3
Q ss_pred hHhhc--cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc-CCC--CCCCCC-C------CCceEE
Q 036657 286 PQAFA--NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS-LKM--LPFDFE-P------ENLIEL 353 (481)
Q Consensus 286 ~~~f~--~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~--lP~~~~-l------~~L~~L 353 (481)
+..+. ++++|++|++++|.+ ...+|..+..++ +|++|++++|. ++. +|..+. + .+|++|
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l--------~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPN--------LTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTT--------CSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred chhhhhcccCCCCEEEecCCcC--------CccChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 34444 677777777777664 455666666666 66777766665 553 565543 3 666666
Q ss_pred EcCCCCcccccc--cccCCCCCcEEeccCCCCCc-ccCCCCCCCCCCEEeccCCCCCccccccccCCCC-CCEEeeeCCC
Q 036657 354 NLPYSKVEQIWK--GEKKAFKLKYIDISHSQQLV-RMLDLSETPNLERTNLLNCRDLACVRSSIENFNN-LSMLCFKGCE 429 (481)
Q Consensus 354 ~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~-~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~-L~~L~l~~c~ 429 (481)
++++|+++.+|. .+..+++|++|++++|. +. .+|.++.+++|++|++++| .+..+|..++.+++ |++|+++++
T Consensus 311 ~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N- 387 (636)
T 4eco_A 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN- 387 (636)
T ss_dssp ECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS-
T ss_pred ECCCCcCCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC-
Confidence 666666666666 66666666666666664 44 6666666666666666663 34466666666666 666666653
Q ss_pred CCccCCCCCC---CCCCcEEEeecCC
Q 036657 430 SLRSFPRGIH---FVSPITIDFSFCV 452 (481)
Q Consensus 430 ~l~~lp~~~~---l~~L~~L~l~~c~ 452 (481)
.+..+|..+. +++|+.|++++|.
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred cCcccchhhhhcccCccCEEECcCCc
Confidence 4555555432 2245555555543
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=4.5e-16 Score=161.26 Aligned_cols=181 Identities=20% Similarity=0.193 Sum_probs=89.2
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKV 360 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i 360 (481)
+.+..|.++++|+.|++++|.+ ..+|. .+..++ +|++|++++|.+..+++ .|. +.+|++|++++|.+
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSNRL---------KLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC---------CSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred eChhhhhCCccCCEEECCCCcC---------CccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence 3345566666666666665552 23332 244455 55555555555554433 233 55555555555555
Q ss_pred ccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC------------------------CCCCcccccc
Q 036657 361 EQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN------------------------CRDLACVRSS 413 (481)
Q Consensus 361 ~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~------------------------c~~l~~lp~~ 413 (481)
..+ +..+..+++|+.|++++| .+..+|. +..+++|+.|++++ |..+..+|..
T Consensus 141 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 141 VYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred ceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 544 223555555555555555 2444443 44455555555554 4444444444
Q ss_pred ccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccC
Q 036657 414 IENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEV 477 (481)
Q Consensus 414 i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~l 477 (481)
+....+|+.|++++| .++.+|.. + ++++|+.|++++|. +..++. ...+|++|+|++|+++.+
T Consensus 220 ~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 220 CLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp TTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred cccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceE
Confidence 444444555555442 34444421 1 25555555555543 444443 123455666666666554
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=3.3e-16 Score=152.57 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=159.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..... ..+....|.++++|+.|++++|.+. .....+..+..++ +|++|++++|.+..+|..+.
T Consensus 28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~~~~~-~L~~L~Ls~n~i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLS------FKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFL 98 (306)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCC------EEEEEEHHHHSCS-CCCEEECCSCSEEEEEEEEE
T ss_pred CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccC------cccCccccccccc-ccCEEECCCCccccChhhcC
Confidence 4566666654443 3466677899999999999998741 0122355566677 99999999999999998765
Q ss_pred -CCCceEEEcCCCCcccccc--cccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCCc-cccccccCCCCC
Q 036657 347 -PENLIELNLPYSKVEQIWK--GEKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDLA-CVRSSIENFNNL 420 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l~-~lp~~i~~L~~L 420 (481)
+.+|++|++++|.+..++. .+..+++|++|++++|. +...+ . ++.+++|++|++++|.... .+|..++.+++|
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 9999999999999998875 68999999999999995 55554 4 8899999999999965333 478889999999
Q ss_pred CEEeeeCCCCCccC-CCCC-CCCCCcEEEeecCCCCCccCC-c---ccccceEeeeCcCCccCCC
Q 036657 421 SMLCFKGCESLRSF-PRGI-HFVSPITIDFSFCVNLTEFPQ-I---SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 421 ~~L~l~~c~~l~~l-p~~~-~l~~L~~L~l~~c~~L~~lp~-~---~~~L~~L~L~~~~l~~lP~ 479 (481)
++|++++| .+..+ |..+ ++++|++|++++|. +..+|. . +.+|+.|++++|.++..++
T Consensus 178 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 178 TFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCH
Confidence 99999975 67776 4455 49999999999965 777765 2 4678999999999976543
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.3e-16 Score=156.18 Aligned_cols=177 Identities=19% Similarity=0.164 Sum_probs=95.8
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCcc--ccccccccceeeccccCCCCCCCCC-C-----CCceEEEcCCCCccc
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGL--EYLPEELRYLHWHEYSLKMLPFDFE-P-----ENLIELNLPYSKVEQ 362 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l--~~l~~~Lr~L~l~~~~l~~lP~~~~-l-----~~L~~L~L~~~~i~~ 362 (481)
++++|+.|++++|.+ ...+|..+ ..++ +|++|++++|.+..+|..+. + .+|++|++++|++..
T Consensus 93 ~l~~L~~L~L~~n~l--------~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 93 GISGLQELTLENLEV--------TGTAPPPLLEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp TTSCCCEEEEEEEBC--------BSCCCCCSSSCCSC-CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred CcCCccEEEccCCcc--------cchhHHHHHHhcCC-CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 456666666666553 33445544 5555 66666666666665554443 2 566666666666665
Q ss_pred cc-ccccCCCCCcEEeccCCCCCcc--cC-CC--CCCCCCCEEeccCCCCCccc---ccc-ccCCCCCCEEeeeCCCCCc
Q 036657 363 IW-KGEKKAFKLKYIDISHSQQLVR--ML-DL--SETPNLERTNLLNCRDLACV---RSS-IENFNNLSMLCFKGCESLR 432 (481)
Q Consensus 363 lp-~~~~~L~~L~~L~Ls~~~~l~~--lp-~~--~~l~~L~~L~L~~c~~l~~l---p~~-i~~L~~L~~L~l~~c~~l~ 432 (481)
++ ..+..+++|++|++++|..... +| .+ +.+++|++|++++| .+..+ +.. +.++++|++|++++ +.+.
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~ 241 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSH-NSLR 241 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTT-SCCC
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCC-CcCC
Confidence 54 4566666666666666642222 12 12 56666666666664 33322 222 24556666666664 3444
Q ss_pred cCC--CCC-CCCCCcEEEeecCCCCCccCCcc-cccceEeeeCcCCccCCC
Q 036657 433 SFP--RGI-HFVSPITIDFSFCVNLTEFPQIS-GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 433 ~lp--~~~-~l~~L~~L~l~~c~~L~~lp~~~-~~L~~L~L~~~~l~~lP~ 479 (481)
..+ ..+ .+++|++|++++|. +..+|..+ .+|++|+|++|+|+.+|.
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC
T ss_pred cccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh
Confidence 433 112 25666666666643 55666533 356666666666665543
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=2.3e-16 Score=173.14 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=124.6
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CCCceEEEcCCCCcc-c
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYSKVE-Q 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~~i~-~ 362 (481)
+..|..+++|+.|++++|.+ ...+|..+..++ +|++|++++|.+. .+|..+. +.+|++|++++|++. .
T Consensus 459 p~~~~~l~~L~~L~L~~N~l--------~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDL--------TGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCC--------CSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CHHHcCCCCceEEEecCCcc--------cCcCCHHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 34444555555555555543 335566666666 7777777777766 5666665 777777777777776 5
Q ss_pred ccccccCCCCCcEEeccCCCCCcccCC-----------------------------------------------------
Q 036657 363 IWKGEKKAFKLKYIDISHSQQLVRMLD----------------------------------------------------- 389 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~~l~~lp~----------------------------------------------------- 389 (481)
+|..+..+++|++|++++|.....+|.
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 677777777777777777642223331
Q ss_pred ------------------CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeec
Q 036657 390 ------------------LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSF 450 (481)
Q Consensus 390 ------------------~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~ 450 (481)
++.+++|+.|++++|.-...+|..++++++|+.|+++++.--..+|..+. +++|+.|++++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 33456777888887665557888888888888888887544447777774 88888888888
Q ss_pred CCCCCccCCccc---ccceEeeeCcCCc-cCCC
Q 036657 451 CVNLTEFPQISG---NIIELKLWYTAIE-EVPS 479 (481)
Q Consensus 451 c~~L~~lp~~~~---~L~~L~L~~~~l~-~lP~ 479 (481)
|.-...+|..++ +|++|++++|+++ .+|.
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 764447777544 4578888888884 4554
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=2e-16 Score=173.72 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=107.8
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CCCceEEEcCCCCcc-c
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYSKVE-Q 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~~i~-~ 362 (481)
+..|.++++|+.|++.+|.+ ...+|..+..++ +|++|++++|.+. .+|..+. +.+|++|++++|++. .
T Consensus 435 p~~l~~l~~L~~L~L~~n~l--------~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNML--------EGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCC--------CSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cHHHhcCCCCCEEECCCCcc--------cCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 34455555555555555543 334555555555 6666666666655 4455554 666666666666665 5
Q ss_pred ccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccc-----------------------------
Q 036657 363 IWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRS----------------------------- 412 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~----------------------------- 412 (481)
+|..++.+++|++|++++|.....+|. ++.+++|+.|++++|.....+|.
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 566666666666666666643335554 66666666666666533223332
Q ss_pred -----------------------------------------cccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeec
Q 036657 413 -----------------------------------------SIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSF 450 (481)
Q Consensus 413 -----------------------------------------~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~ 450 (481)
.++.+++|+.|+++++.--..+|..+. +++|+.|++++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 233345566666665433335666554 77788888877
Q ss_pred CCCCCccCCccc---ccceEeeeCcCCc-cCCC
Q 036657 451 CVNLTEFPQISG---NIIELKLWYTAIE-EVPS 479 (481)
Q Consensus 451 c~~L~~lp~~~~---~L~~L~L~~~~l~-~lP~ 479 (481)
|.-...+|..++ +|+.|+|++|+++ .+|.
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 664457776544 4578888888875 5554
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=7.8e-16 Score=151.65 Aligned_cols=201 Identities=15% Similarity=0.186 Sum_probs=144.8
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCccc------------CcceecC-Cccccccccccceee
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIM------------SSKLHLD-QGLEYLPEELRYLHW 333 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~------------~~~~~l~-~~l~~l~~~Lr~L~l 333 (481)
..++.+.+..... ..+.+..|.++++|+.|++++|.+..-... .....++ ..+..++ +|++|++
T Consensus 76 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCT-TCCEEEC
T ss_pred CCCCEEECCCCcC--CeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCc-cccEEEC
Confidence 4555555543332 334567788888888888888764200000 0011111 1245555 7777777
Q ss_pred ccccCCC---CCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCC
Q 036657 334 HEYSLKM---LPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDL 407 (481)
Q Consensus 334 ~~~~l~~---lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l 407 (481)
++|.+.. .|..+. +.+|++|++++|.++.+|..+. ++|++|++++|. +..++ . ++.+++|++|++++|. +
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l 228 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-I 228 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-C
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-C
Confidence 7777653 344455 8899999999999999988764 899999999995 77764 3 8999999999999965 5
Q ss_pred cccc-ccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCc----------ccccceEeeeCcCCc
Q 036657 408 ACVR-SSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQI----------SGNIIELKLWYTAIE 475 (481)
Q Consensus 408 ~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~----------~~~L~~L~L~~~~l~ 475 (481)
..++ ..++.+++|+.|++++| .+..+|..+. +++|++|++++|. +..+|.. ...++.|++++|.+.
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCccc
Confidence 5554 47999999999999975 7889998775 9999999999965 8888752 245689999999886
Q ss_pred c
Q 036657 476 E 476 (481)
Q Consensus 476 ~ 476 (481)
.
T Consensus 307 ~ 307 (330)
T 1xku_A 307 Y 307 (330)
T ss_dssp G
T ss_pred c
Confidence 3
No 41
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.6e-15 Score=145.21 Aligned_cols=172 Identities=20% Similarity=0.259 Sum_probs=142.9
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKK 369 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~ 369 (481)
.+++.++++++. ...+|..+ +.+++.|+++++.++.+|.. |. +.+|++|++++|.++.+|.+ +..
T Consensus 16 ~~~~~l~~~~~~---------l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~ 83 (270)
T 2o6q_A 16 NNKNSVDCSSKK---------LTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83 (270)
T ss_dssp TTTTEEECTTSC---------CSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS
T ss_pred CCCCEEEccCCC---------CCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC
Confidence 356788888776 34566543 44899999999999999874 65 99999999999999999887 488
Q ss_pred CCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeeeCCCCCccCCCCC--CCCCCc
Q 036657 370 AFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFKGCESLRSFPRGI--HFVSPI 444 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~ 444 (481)
+++|++|++++|. +..+|. +..+++|++|+++++ .+..+|. .++.+++|++|++++ +.+..+|... .+++|+
T Consensus 84 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 84 LKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccc
Confidence 9999999999995 888885 789999999999995 4555554 478999999999997 5788888753 499999
Q ss_pred EEEeecCCCCCccCCc----ccccceEeeeCcCCccCCCC
Q 036657 445 TIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~s 480 (481)
.|++++|. +..+|.. +.+|++|+|++|.++.+|..
T Consensus 161 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 161 ELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred eeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 99999975 8887762 46789999999999998864
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=1.1e-15 Score=147.39 Aligned_cols=175 Identities=14% Similarity=0.172 Sum_probs=145.6
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC-CCCCC-CCCceEEEcCCCC-cccc-cccc
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML-PFDFE-PENLIELNLPYSK-VEQI-WKGE 367 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-P~~~~-l~~L~~L~L~~~~-i~~l-p~~~ 367 (481)
.++|+.|++++|.+ ....+..+..++ +|++|++++|.+..+ |..|. +.+|++|++++|. +..+ |..+
T Consensus 31 ~~~l~~L~l~~n~i--------~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRI--------SHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTTSCC--------CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCceEEEeeCCcC--------CccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 46899999999984 333345688888 999999999999988 55566 9999999999997 8888 6679
Q ss_pred cCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCC-C-CCCC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRG-I-HFVS 442 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~ 442 (481)
..+++|++|++++|. +..++. +..+++|++|++++| .+..+|.. ++.+++|++|++++ +.++.+|.. + ++++
T Consensus 102 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHS 178 (285)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTT
T ss_pred cCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccc
Confidence 999999999999995 777754 899999999999995 46666654 88999999999997 578888874 4 4999
Q ss_pred CcEEEeecCCCCCcc-CCc---ccccceEeeeCcCCccCCC
Q 036657 443 PITIDFSFCVNLTEF-PQI---SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 443 L~~L~l~~c~~L~~l-p~~---~~~L~~L~L~~~~l~~lP~ 479 (481)
|+.|++++|. +..+ |.. ..+|+.|++++|.++.+|.
T Consensus 179 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 179 LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred cCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 9999999976 6665 554 3577999999999998874
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=6.6e-16 Score=148.02 Aligned_cols=192 Identities=24% Similarity=0.295 Sum_probs=145.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
..++.+.+....... ...+..+++|+.|++++|.+ ..+ ..+..++ +|++|++++|.++.+|.. |
T Consensus 41 ~~L~~L~l~~~~i~~----~~~l~~l~~L~~L~l~~n~l---------~~~-~~l~~l~-~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS----VQGIQYLPNVRYLALGGNKL---------HDI-SALKELT-NLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp TTCCEEECTTSCCCC----CTTGGGCTTCCEEECTTSCC---------CCC-GGGTTCT-TCCEEECTTSCCCCCCTTTT
T ss_pred cceeeeeeCCCCccc----ccccccCCCCcEEECCCCCC---------CCc-hhhcCCC-CCCEEECCCCccCccChhHh
Confidence 345555555443322 23578899999999998874 223 3677888 999999999999988876 4
Q ss_pred C-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCC
Q 036657 346 E-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNL 420 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L 420 (481)
. +.+|++|++++|++..+|.. +..+++|++|++++| .+..+|. ++.+++|++|++++| .+..+|.. ++.+++|
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccC
Confidence 4 89999999999999988766 688999999999999 4888876 789999999999996 45566654 6889999
Q ss_pred CEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCCcccccceEeeeCcCC-ccCCCC
Q 036657 421 SMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAI-EEVPSS 480 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l-~~lP~s 480 (481)
++|++++| .+..+|... .+++|+.|++++|+-.... ++++.|+++.|.+ ..+|.+
T Consensus 184 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 184 KDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCT----TTTHHHHHHHHHTGGGBBCT
T ss_pred CEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCccccC----cHHHHHHHHHHhCCCcccCc
Confidence 99999974 677777643 4999999999987633333 3566677776665 355554
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=1e-15 Score=146.79 Aligned_cols=175 Identities=21% Similarity=0.240 Sum_probs=145.4
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc-c
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG-E 367 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~-~ 367 (481)
+..+++|+.|.+.++.+ ..+ ..+..++ +|++|++++|.+..+|....+.+|++|++++|.++.++.. +
T Consensus 37 ~~~l~~L~~L~l~~~~i---------~~~-~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDI---------KSV-QGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSCC---------CCC-TTGGGCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCCc---------ccc-cccccCC-CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHh
Confidence 46688999999998873 333 3578888 9999999999999887444599999999999999988766 6
Q ss_pred cCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCC--CCCC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGI--HFVS 442 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~ 442 (481)
..+++|++|++++|. +..+|. ++.+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|... ++++
T Consensus 106 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 106 DKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCcc
Confidence 899999999999995 888876 899999999999996 56677655 689999999999975 788887754 4999
Q ss_pred CcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCC
Q 036657 443 PITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 443 L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP 478 (481)
|++|++++|. +..+|.. +.+|+.|++++|.+....
T Consensus 183 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 183 LKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 9999999975 7777752 467899999999886443
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.7e-16 Score=174.79 Aligned_cols=178 Identities=21% Similarity=0.253 Sum_probs=126.3
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc-CCC--CCCCCC--------CCCceEEEcCCC
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS-LKM--LPFDFE--------PENLIELNLPYS 358 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~--lP~~~~--------l~~L~~L~L~~~ 358 (481)
.++++|+.|++++|.+ ...+|..+..++ +|++|++++|. ++. +|..+. +++|++|+|++|
T Consensus 488 ~~L~~L~~L~Ls~N~l--------~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPN--------MTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp GGCTTCCEEEEESCTT--------CCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCCCCCEEECcCCCC--------CccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3777777777777764 556777777777 78888887776 653 665432 347888888888
Q ss_pred Ccccccc--cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCC-CCEEeeeCCCCCccCC
Q 036657 359 KVEQIWK--GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNN-LSMLCFKGCESLRSFP 435 (481)
Q Consensus 359 ~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~-L~~L~l~~c~~l~~lp 435 (481)
++..+|. .+..+++|++|++++|. +..+|.++.+++|+.|++++|. +..+|..++.+++ |+.|++++| .+..+|
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp 635 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIP 635 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-CCCSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC-CCCcCc
Confidence 7777777 77788888888888774 6677777788888888888754 4577777888877 888888864 566777
Q ss_pred CCCC-C--CCCcEEEeecCCCCCccCCcc--------cccceEeeeCcCCccCCC
Q 036657 436 RGIH-F--VSPITIDFSFCVNLTEFPQIS--------GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 436 ~~~~-l--~~L~~L~l~~c~~L~~lp~~~--------~~L~~L~L~~~~l~~lP~ 479 (481)
..+. + ++|+.|++++|.--..+|.+. .+|+.|+|++|.++.+|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~ 690 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence 6553 3 348888888765333333321 267888888888887775
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.67 E-value=3.5e-17 Score=188.51 Aligned_cols=132 Identities=20% Similarity=0.342 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCC-----------chhhHHHHHhccccCchhhHHH
Q 036657 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLIS-----------EPSIYKVLKISYDELNSEVKEI 175 (481)
Q Consensus 107 ~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~-----------~~~i~~~L~lSYd~L~~~~K~c 175 (481)
+++.+++++|+++|+|+||||+++|+.|+.+. ..|+..++.+.... ...+..+|.+||+.||+++|+|
T Consensus 304 ~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ 382 (1249)
T 3sfz_A 304 EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDY 382 (1249)
T ss_dssp TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHH
T ss_pred hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHH
Confidence 34567899999999999999999999998775 57999999986543 2469999999999999999999
Q ss_pred hhhhccCCCCCCHH--HHHHHhcCC-CcccccHHHHhhCcceeecCCCc---eehhHHHHHHHHHHhhcc
Q 036657 176 FIDIACFFKGEDID--FMTRIHDDP-MSIHDGLNILVSKSLITISDENE---LQMHDLLQEMGQTIVRQE 239 (481)
Q Consensus 176 Fl~~a~Fp~~~~~~--~l~~~~~~~-~~~~~~~~~L~~r~li~~~~~~~---~~mHdll~d~~~~i~~~e 239 (481)
|+|||+||+++.++ .++.+|.+. ..++.++++|+++||++...++. |+|||++|+++++.+.++
T Consensus 383 ~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 383 YTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999997654 588999877 78889999999999999886664 999999999999887665
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=7.6e-16 Score=152.62 Aligned_cols=175 Identities=13% Similarity=0.145 Sum_probs=89.5
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
+..+++|+.|++++|.+ ..++. +..++ +|++|++++|.++.+|....+.+|++|++++|.+..++. +.
T Consensus 62 ~~~~~~L~~L~l~~n~i---------~~~~~-~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~ 129 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQI---------TDISP-LSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LA 129 (347)
T ss_dssp GGGCTTCCEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred hhhcCCccEEEccCCcc---------ccchh-hhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hc
Confidence 45555555555555542 22332 44454 555555555555555432225555555555555555544 45
Q ss_pred CCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCC---------------------CCccccccccCCCCCCEEeeeC
Q 036657 369 KAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCR---------------------DLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~---------------------~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
.+++|++|++++|..+..++.+..+++|++|++++|. .+..++. +..+++|+.|++++
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYV 208 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeeccc
Confidence 5555555555555444444445555555555555432 2333332 44445555555543
Q ss_pred CCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccCC
Q 036657 428 CESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 428 c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP 478 (481)
+.+..++....+++|++|++++|. +..+|. ...+|++|++++|.++.+|
T Consensus 209 -n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 209 -NQITDITPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp -SCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred -CCCCCCchhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCCh
Confidence 233333332236667777777654 555554 2445677777777766553
No 48
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=4.4e-16 Score=167.23 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=105.3
Q ss_pred cceeeeeecCCcccccccCh-HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNP-QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDF 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~-~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~ 345 (481)
..++.+.+..+... .+.. ..|.++++|+.|++++|.+ .+.+| .+..++ +|++|++++|.+..+|..+
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l--------~g~ip-~~~~l~-~L~~L~L~~N~l~~lp~~l 372 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQL--------EGKLP-AFGSEI-KLASLNLAYNQITEIPANF 372 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCC--------EEECC-CCEEEE-EESEEECCSSEEEECCTTS
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcC--------ccchh-hhCCCC-CCCEEECCCCccccccHhh
Confidence 34455544433332 2222 2677777777777777763 33556 556665 6666666666666666655
Q ss_pred C-CCC-ceEEEcCCCCcccccccccCCC--CCcEEeccCCCCCcccCC-CC-------CCCCCCEEeccCCCCCcccccc
Q 036657 346 E-PEN-LIELNLPYSKVEQIWKGEKKAF--KLKYIDISHSQQLVRMLD-LS-------ETPNLERTNLLNCRDLACVRSS 413 (481)
Q Consensus 346 ~-l~~-L~~L~L~~~~i~~lp~~~~~L~--~L~~L~Ls~~~~l~~lp~-~~-------~l~~L~~L~L~~c~~l~~lp~~ 413 (481)
. +.+ |++|++++|.++.+|..+..+. +|++|++++|.....+|. ++ .+++|++|++++| .+..+|..
T Consensus 373 ~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~ 451 (636)
T 4eco_A 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKE 451 (636)
T ss_dssp EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTH
T ss_pred hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHH
Confidence 4 555 6666666666666665554433 566666666542233333 44 4555566666553 34455544
Q ss_pred cc-CCCCCCEEeeeCCCCCccCCCCCC--CC-------CCcEEEeecCCCCCccCCcc-----cccceEeeeCcCCccCC
Q 036657 414 IE-NFNNLSMLCFKGCESLRSFPRGIH--FV-------SPITIDFSFCVNLTEFPQIS-----GNIIELKLWYTAIEEVP 478 (481)
Q Consensus 414 i~-~L~~L~~L~l~~c~~l~~lp~~~~--l~-------~L~~L~l~~c~~L~~lp~~~-----~~L~~L~L~~~~l~~lP 478 (481)
+. .+++|++|++++ +.+..+|.... +. +|+.|++++|. +..+|..+ .+|+.|+|++|.++.+|
T Consensus 452 ~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip 529 (636)
T 4eco_A 452 LFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529 (636)
T ss_dssp HHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCC
T ss_pred HHccCCCCCEEECCC-CCCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcC
Confidence 32 355555555554 34445554331 11 55555555543 44555432 24455555555555555
Q ss_pred C
Q 036657 479 S 479 (481)
Q Consensus 479 ~ 479 (481)
.
T Consensus 530 ~ 530 (636)
T 4eco_A 530 T 530 (636)
T ss_dssp C
T ss_pred h
Confidence 4
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.4e-16 Score=175.48 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=160.9
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCC-CCCCcccCcce-ecCCccc-------cccccccceeeccc
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPK-HNDIPIMSSKL-HLDQGLE-------YLPEELRYLHWHEY 336 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~-~~~~~~~~~~~-~l~~~l~-------~l~~~Lr~L~l~~~ 336 (481)
...++.+.+..+. .....+..|.++++|+.|++++|. + .. .+|..++ .++ +|++|++++|
T Consensus 490 L~~L~~L~Ls~N~--l~~~iP~~l~~L~~L~~L~Ls~N~~l--------sg~~iP~~i~~L~~~~~~l~-~L~~L~Ls~N 558 (876)
T 4ecn_A 490 LKDLTDVELYNCP--NMTQLPDFLYDLPELQSLNIACNRGI--------SAAQLKADWTRLADDEDTGP-KIQIFYMGYN 558 (876)
T ss_dssp CTTCCEEEEESCT--TCCSCCGGGGGCSSCCEEECTTCTTS--------CHHHHHHHHHHHHHCTTTTT-TCCEEECCSS
T ss_pred CCCCCEEECcCCC--CCccChHHHhCCCCCCEEECcCCCCc--------ccccchHHHHhhhhcccccC-CccEEEeeCC
Confidence 4456666665433 233446889999999999999986 4 33 5665444 445 9999999999
Q ss_pred cCCCCCC--CCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCC-CCEEeccCCCCCcccc
Q 036657 337 SLKMLPF--DFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPN-LERTNLLNCRDLACVR 411 (481)
Q Consensus 337 ~l~~lP~--~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~-L~~L~L~~c~~l~~lp 411 (481)
.+..+|. .+. +.+|++|+|++|.+..+| .+..+++|+.|++++|. +..+|. +..+++ |++|++++|. +..+|
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCc
Confidence 9999999 776 999999999999999999 89999999999999995 779997 999999 9999999965 66999
Q ss_pred ccccCCCC--CCEEeeeCCCCCccCCC---CC---CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCC
Q 036657 412 SSIENFNN--LSMLCFKGCESLRSFPR---GI---HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 412 ~~i~~L~~--L~~L~l~~c~~l~~lp~---~~---~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~ 479 (481)
..++.++. |+.|++++|.-...+|. .. .+++|+.|++++|. +..+|.. +.+|+.|+|++|.|+.+|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 88887765 99999998643322332 22 35699999999975 8899973 4688999999999999997
Q ss_pred C
Q 036657 480 S 480 (481)
Q Consensus 480 s 480 (481)
+
T Consensus 715 ~ 715 (876)
T 4ecn_A 715 N 715 (876)
T ss_dssp T
T ss_pred H
Confidence 5
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=1.2e-15 Score=162.65 Aligned_cols=148 Identities=12% Similarity=0.154 Sum_probs=109.9
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC-CCCCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML-PFDFE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-P~~~~ 346 (481)
.++.+.+..+. ...+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.+..+ |..|.
T Consensus 34 ~l~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 34 STECLEFSFNV--LPTIQNTTFSRLINLTFLDLTRCQI--------YWIHEDTFQSQH-RLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp TCCEEECTTCC--CSEECTTTSTTCTTCSEEECTTCCC--------CEECTTTTTTCT-TCCEEECTTCCCSEECTTTTS
T ss_pred cCcEEEccCCc--cCcCChhHhccCccceEEECCCCcc--------ceeChhhccCcc-ccCeeeCCCCcccccChhhhc
Confidence 45555554433 3345677888999999999998874 455577888888 999999999988876 44565
Q ss_pred -CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCccc--CCCCCCCCCCEEeccCCCCCccc-cccccCCCCCC
Q 036657 347 -PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRM--LDLSETPNLERTNLLNCRDLACV-RSSIENFNNLS 421 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~l--p~~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~ 421 (481)
+.+|++|++++|.+..+ |..+..+++|++|++++|. +..+ |.+..+++|++|+++++. +..+ |..++.+++|+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQAT 180 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCC
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccc
Confidence 88999999999988887 5668889999999999885 6665 556668889999998854 4444 55577777777
Q ss_pred --EEeeeCC
Q 036657 422 --MLCFKGC 428 (481)
Q Consensus 422 --~L~l~~c 428 (481)
.|+++++
T Consensus 181 ~l~L~l~~n 189 (606)
T 3t6q_A 181 NLSLNLNGN 189 (606)
T ss_dssp SEEEECTTC
T ss_pred eeEEecCCC
Confidence 6666653
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=154.13 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=147.8
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-cc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EK 368 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~ 368 (481)
++|+.|++++|.+ ..+|. .+..++ +|++|++++|.++.+++. |. +.+|++|++++|.++.+|.. +.
T Consensus 52 ~~L~~L~l~~n~i---------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDLSNNRI---------TYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp TTCCEEECTTSCC---------CEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred ccCcEEECCCCcC---------cccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 5899999999984 44554 788898 999999999999988654 65 89999999999999999887 88
Q ss_pred CCCCCcEEeccCCCCCcccCC---CCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEeeeCCCCCccC-CCCCC-CCC
Q 036657 369 KAFKLKYIDISHSQQLVRMLD---LSETPNLERTNLLNCRDLACVR-SSIENFNNLSMLCFKGCESLRSF-PRGIH-FVS 442 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~l-p~~~~-l~~ 442 (481)
.+++|++|++++|. +..+|. ++.+++|++|++++|..+..++ ..++.+++|++|++++| .+..+ |..+. +++
T Consensus 122 ~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 122 PLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQN 199 (353)
T ss_dssp TCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSE
T ss_pred CCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhcccc
Confidence 99999999999994 888886 8899999999999986677764 56899999999999986 45555 66664 999
Q ss_pred CcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCC
Q 036657 443 PITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 443 L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~ 479 (481)
|++|++++|. +..+|.. ..+|++|++++|.++.+|.
T Consensus 200 L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 200 VSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp EEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred CCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccc
Confidence 9999999975 7888763 5688999999999987653
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.1e-15 Score=146.64 Aligned_cols=175 Identities=14% Similarity=0.150 Sum_probs=143.7
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccc-ccccC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIW-KGEKK 369 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp-~~~~~ 369 (481)
++|+.|++++|.+ ....+..+..++ +|++|++++|.+..+|.. |. +.+|++|++++|.+..++ ..+..
T Consensus 28 ~~l~~L~ls~n~l--------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPL--------RHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCC--------CEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCCCcc--------cccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 5799999999984 333344788888 999999999999998874 55 999999999999999876 56899
Q ss_pred CCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcc--ccccccCCCCCCEEeeeCCCCCccCCC-CCC-CCCC
Q 036657 370 AFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLAC--VRSSIENFNNLSMLCFKGCESLRSFPR-GIH-FVSP 443 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~lp~-~~~-l~~L 443 (481)
+++|++|++++|. +..++. ++.+++|++|+++++. +.. +|..++.+++|++|++++| .+..++. .+. +++|
T Consensus 99 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 99 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 175 (276)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTC
T ss_pred CccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhc
Confidence 9999999999995 777775 8999999999999954 444 7889999999999999974 6777764 232 4555
Q ss_pred c----EEEeecCCCCCccCCc---ccccceEeeeCcCCccCCCC
Q 036657 444 I----TIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 444 ~----~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
+ .|+++++. +..+|.. ..+|++|+|++|.++.+|..
T Consensus 176 ~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 176 PLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp TTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred cccceeeecCCCc-ccccCccccCCCcccEEECCCCceeecCHh
Confidence 5 89999965 8887763 23789999999999999874
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=5.4e-15 Score=152.36 Aligned_cols=169 Identities=16% Similarity=0.136 Sum_probs=89.0
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~ 366 (481)
.|..+++|+.|++++|.+ ..+| +..++ +|++|++++|.++.+| +. +.+|++|++++|+++.+|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l---------~~~~--~~~l~-~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~-- 122 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNI---------TTLD--LSQNT-NLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD-- 122 (457)
T ss_dssp TGGGCTTCSEEECCSSCC---------SCCC--CTTCT-TCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--
T ss_pred hhcccCCCCEEEccCCcC---------CeEc--cccCC-CCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--
Confidence 355566666666665552 1122 44444 5555555555555553 32 555555555555555543
Q ss_pred ccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCC---------------------CccccccccCCCCCCEEee
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRD---------------------LACVRSSIENFNNLSMLCF 425 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~---------------------l~~lp~~i~~L~~L~~L~l 425 (481)
+..+++|++|++++|. +..+| ++.+++|++|++++|.. +..+| ++.+++|+.|++
T Consensus 123 ~~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNC 198 (457)
T ss_dssp CTTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEEC
T ss_pred CCCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEEC
Confidence 4555555555555552 44432 44444444444444433 33443 455555555555
Q ss_pred eCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC-cccccceEeeeCcCCccCCC
Q 036657 426 KGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ-ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 426 ~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~~~~l~~lP~ 479 (481)
++ +.++.++ ...+++|+.|++++|. +..+|- ...+|+.|++++|.++.+|.
T Consensus 199 ~~-N~l~~~~-l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 199 DT-NNITKLD-LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CS-SCCSCCC-CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred cC-CcCCeec-cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCH
Confidence 54 2444442 1236677777777653 666662 23456777777777776664
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=5.7e-16 Score=151.52 Aligned_cols=194 Identities=16% Similarity=0.146 Sum_probs=150.9
Q ss_pred CcceeeeeecCCcccccccChHhh--ccCCCCcEEEEeCCCCCCCcccCcceecCCccccc-----cccccceeeccccC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAF--ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYL-----PEELRYLHWHEYSL 338 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f--~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l-----~~~Lr~L~l~~~~l 338 (481)
...++.+.+....... ..+..+ ..+++|+.|++++|.+ ...|..+..+ + +|++|++++|.+
T Consensus 94 l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~l~~~~~~-~L~~L~L~~N~l 161 (312)
T 1wwl_A 94 ISGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSW---------ATRDAWLAELQQWLKP-GLKVLSIAQAHS 161 (312)
T ss_dssp TSCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBC---------SSSSSHHHHHHTTCCT-TCCEEEEESCSC
T ss_pred cCCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCC---------cchhHHHHHHHHhhcC-CCcEEEeeCCCC
Confidence 4566666665444321 223333 8899999999999984 3347777766 5 999999999999
Q ss_pred CCCC-CCCC-CCCceEEEcCCCCccc---ccccc--cCCCCCcEEeccCCCCCcccCC-----CCCCCCCCEEeccCCCC
Q 036657 339 KMLP-FDFE-PENLIELNLPYSKVEQ---IWKGE--KKAFKLKYIDISHSQQLVRMLD-----LSETPNLERTNLLNCRD 406 (481)
Q Consensus 339 ~~lP-~~~~-l~~L~~L~L~~~~i~~---lp~~~--~~L~~L~~L~Ls~~~~l~~lp~-----~~~l~~L~~L~L~~c~~ 406 (481)
..+| ..|. +.+|++|++++|++.. +|..+ ..+++|++|++++|. +..+|. +..+++|++|+++++.
T Consensus 162 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~- 239 (312)
T 1wwl_A 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS- 239 (312)
T ss_dssp CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-
T ss_pred ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-
Confidence 9988 4565 9999999999998653 45555 899999999999995 775443 4688999999999964
Q ss_pred Ccccc--ccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCcc
Q 036657 407 LACVR--SSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 407 l~~lp--~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~ 476 (481)
+...+ ..+..+++|++|++++ +.++.+|..+. ++|++|+++++ ++..+|. .+.+|++|+|++|.++.
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~-~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP-AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC-SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred CCcccchhhhhhcCCCCEEECCC-CccChhhhhcc-CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCCCCC
Confidence 54433 4567789999999997 57889998776 89999999996 4888887 24567999999999875
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.64 E-value=1.9e-15 Score=161.22 Aligned_cols=177 Identities=17% Similarity=0.194 Sum_probs=115.9
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC--CCC-CCCceEEEcCCCCccc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF--DFE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~--~~~-l~~L~~L~L~~~~i~~ 362 (481)
+..+..+++|+.|++++|. ...+|..+..++ +|++|++++|.+..+++ .+. +.+|++|++++|.+..
T Consensus 369 ~~~~~~~~~L~~L~L~~n~---------l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNG---------AIIMSANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp CHHHHCCSCCCEEECCSCS---------EEEECCCCTTCT-TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred hhhhccCCcccEeECCCCc---------cccchhhccCCC-CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 4556667777777777666 445666667776 77777777777666544 343 7777777777777764
Q ss_pred -ccccccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccC-CCC
Q 036657 363 -IWKGEKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSF-PRG 437 (481)
Q Consensus 363 -lp~~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~ 437 (481)
.|..+..+++|++|++++|. +.. +|. ++.+++|++|++++|......|..++.+++|++|++++| .+..+ |..
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 516 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSH 516 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGG
T ss_pred cchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHH
Confidence 45557777777777777774 443 455 677777777777776444444556777777777777765 44444 444
Q ss_pred CC-CCCCcEEEeecCCCCCccCCcc----cccceEeeeCcCCc
Q 036657 438 IH-FVSPITIDFSFCVNLTEFPQIS----GNIIELKLWYTAIE 475 (481)
Q Consensus 438 ~~-l~~L~~L~l~~c~~L~~lp~~~----~~L~~L~L~~~~l~ 475 (481)
+. +++|++|++++|. +..+|..+ .+|++|++++|.+.
T Consensus 517 ~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 43 7777777777764 66777632 24677777777664
No 56
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=6.2e-16 Score=164.42 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=104.1
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGE 367 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~ 367 (481)
.|..+++|+.|++++|.+ ..++. +..++ +|++|++++|.+..+|....+.+|++|+|++|.+..++ .+
T Consensus 60 ~l~~l~~L~~L~Ls~N~l---------~~~~~-l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l 127 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKL---------TDIKP-LTNLK-NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GL 127 (605)
T ss_dssp TGGGCTTCCEEECTTSCC---------CCCGG-GGGCT-TCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GG
T ss_pred HHccCCCCCEEEeeCCCC---------CCChh-hccCC-CCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cc
Confidence 467777777777777763 23333 66666 77777777777777664334777777777777777664 46
Q ss_pred cCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEE
Q 036657 368 KKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITID 447 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~ 447 (481)
..+++|+.|+|++|. +..++.++.+++|+.|+|++| .+..+++ +..+++|+.|+|++| .+..+|....+++|+.|+
T Consensus 128 ~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 128 VHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLE 203 (605)
T ss_dssp GGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEE
T ss_pred cCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEE
Confidence 777777777777773 666666777777777777775 3455544 777777777777763 666665533577777777
Q ss_pred eecCCCCCccC
Q 036657 448 FSFCVNLTEFP 458 (481)
Q Consensus 448 l~~c~~L~~lp 458 (481)
|++|+ +...|
T Consensus 204 L~~N~-l~~~p 213 (605)
T 1m9s_A 204 LFSQE-CLNKP 213 (605)
T ss_dssp CCSEE-EECCC
T ss_pred ccCCc-CcCCc
Confidence 77754 44333
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=1.1e-15 Score=162.95 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=142.7
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc-
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK- 365 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~- 365 (481)
.+..+++|+.|++++|.+. .....|..+..++ +|++|++++|.+..+|..+. +.+|++|++++|.+..++.
T Consensus 345 ~~~~l~~L~~L~ls~n~l~------~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALS------FSGCCSYSDLGTN-SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CCCCCTTCCEEECCSSCEE------EEEECCHHHHCCS-CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred hhccCCCCCEEECcCCccC------CCcchhhhhccCC-cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh
Confidence 4456667777777766520 0111366677788 89999999999999997776 8999999999999987754
Q ss_pred -cccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCc-cccccccCCCCCCEEeeeCCCCCccCC-CCC-CC
Q 036657 366 -GEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLA-CVRSSIENFNNLSMLCFKGCESLRSFP-RGI-HF 440 (481)
Q Consensus 366 -~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~lp-~~~-~l 440 (481)
.+..+++|++|++++|......|. ++.+++|++|++++|.... .+|..++.+++|+.|++++| .+..++ ..+ ++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l 496 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhccc
Confidence 688999999999999963333555 8999999999999975444 26888999999999999986 565554 445 49
Q ss_pred CCCcEEEeecCCCCCcc-CCcc---cccceEeeeCcCCccCCCC
Q 036657 441 VSPITIDFSFCVNLTEF-PQIS---GNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 441 ~~L~~L~l~~c~~L~~l-p~~~---~~L~~L~L~~~~l~~lP~s 480 (481)
++|++|++++|. +..+ |..+ .+|+.|+|++|+|+.+|..
T Consensus 497 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 497 HRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp TTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred ccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 999999999986 5555 6544 4679999999999998874
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=6.5e-15 Score=156.84 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=39.3
Q ss_pred CCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCCC
Q 036657 418 NNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 418 ~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~s 480 (481)
++|++|++++ +.++.+| ..+++|+.|++++| ++..+|..+.+|+.|+|++|.|+.+|.+
T Consensus 221 ~~L~~L~Ls~-N~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~~lp~~ 279 (622)
T 3g06_A 221 SGLKELIVSG-NRLTSLP--VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPES 279 (622)
T ss_dssp TTCCEEECCS-SCCSCCC--CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCCSCCGG
T ss_pred CCCCEEEccC-CccCcCC--CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCCcCCHH
Confidence 5566666665 3566666 23567777777775 4677777666777777777777777653
No 59
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=3.5e-15 Score=153.41 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=59.1
Q ss_pred CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCcc-CCc---ccc
Q 036657 390 LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEF-PQI---SGN 463 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~l-p~~---~~~ 463 (481)
++.+++|++|++++|......|..++.+++|++|++++| .+..++. .+ ++++|++|++++|. +..+ |.. +.+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPN 372 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChhhcccccc
Confidence 566777777777775433333556777777888888764 5555543 33 37888888888864 5555 433 356
Q ss_pred cceEeeeCcCCccCCCC
Q 036657 464 IIELKLWYTAIEEVPSS 480 (481)
Q Consensus 464 L~~L~L~~~~l~~lP~s 480 (481)
|++|+|++|+|+.+|..
T Consensus 373 L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 373 LKELALDTNQLKSVPDG 389 (455)
T ss_dssp CCEEECCSSCCSCCCTT
T ss_pred ccEEECCCCccccCCHh
Confidence 68888888888887763
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=151.57 Aligned_cols=145 Identities=15% Similarity=0.101 Sum_probs=67.2
Q ss_pred cccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccc---cccc--ccCCCCCcEEeccCCCCCcccCC-----CCCCC
Q 036657 327 ELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQ---IWKG--EKKAFKLKYIDISHSQQLVRMLD-----LSETP 394 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~---lp~~--~~~L~~L~~L~Ls~~~~l~~lp~-----~~~l~ 394 (481)
+|++|++++|.+..+|.. +. +.+|++|+|++|++.. ++.. +..+++|++|++++|. ++.+|. ++.++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCC
Confidence 555555555555544432 32 5555555555554432 2211 2445555555555552 443332 23445
Q ss_pred CCCEEeccCCCCCccccccccCC---CCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEee
Q 036657 395 NLERTNLLNCRDLACVRSSIENF---NNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKL 469 (481)
Q Consensus 395 ~L~~L~L~~c~~l~~lp~~i~~L---~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L 469 (481)
+|++|++++|.-....|..++.+ ++|++|++++ +.++.+|..+. ++|+.|++++|. +..+|. .+++|+.|+|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~-~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP-AKLRVLDLSSNR-LNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC-SCCSCEECCSCC-CCSCCCTTSCCCCSCEEC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc-CCCCEEECCCCc-CCCCchhhhCCCccEEEC
Confidence 55555555533222224444444 3555555553 34445554332 455555555532 444332 2344555555
Q ss_pred eCcCCc
Q 036657 470 WYTAIE 475 (481)
Q Consensus 470 ~~~~l~ 475 (481)
++|.++
T Consensus 302 ~~N~l~ 307 (310)
T 4glp_A 302 DGNPFL 307 (310)
T ss_dssp SSTTTS
T ss_pred cCCCCC
Confidence 555553
No 61
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=3.7e-15 Score=157.00 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=130.6
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEP 347 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 347 (481)
.++.+.+....... ++... .++|+.|++++|.+ ..+| ..++ +|++|++++|.++.+|. +.
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~l---~~~L~~L~Ls~N~l---------~~ip---~~l~-~L~~L~Ls~N~l~~ip~-l~- 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDNL---PPQITVLEITQNAL---------ISLP---ELPA-SLEYLDACDNRLSTLPE-LP- 119 (571)
T ss_dssp TCSEEECCSSCCSC--CCSCC---CTTCSEEECCSSCC---------SCCC---CCCT-TCCEEECCSSCCSCCCC-CC-
T ss_pred CccEEEeCCCCCCc--cCHhH---cCCCCEEECcCCCC---------cccc---cccC-CCCEEEccCCCCCCcch-hh-
Confidence 45555555443322 33322 36899999998884 3566 3344 89999999999988888 54
Q ss_pred CCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeC
Q 036657 348 ENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
.+|++|+|++|+++.+|. .+++|++|++++|. +..+|. .+++|++|++++| .+..+|. ++ ++|++|++++
T Consensus 120 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVST 189 (571)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCS
T ss_pred cCCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcC
Confidence 389999999999988887 68899999999984 778887 6788999999985 5677887 65 8899999996
Q ss_pred CCCCccCCCCCCCCCC-------cEEEeecCCCCCccCCcc---cccceEeeeCcCCcc
Q 036657 428 CESLRSFPRGIHFVSP-------ITIDFSFCVNLTEFPQIS---GNIIELKLWYTAIEE 476 (481)
Q Consensus 428 c~~l~~lp~~~~l~~L-------~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l~~ 476 (481)
+.++.+|. +.- +| +.|++++| .+..+|..+ .+|+.|+|++|.++.
T Consensus 190 -N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 190 -NLLESLPA-VPV-RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -SCCSSCCC-CC---------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred -CCCCchhh-HHH-hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 57888887 422 66 99999986 488888743 466889999998854
No 62
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=1.2e-14 Score=137.57 Aligned_cols=148 Identities=18% Similarity=0.224 Sum_probs=98.9
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKK 369 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~ 369 (481)
.+|+.|++++|.+ ....+..+..++ +|++|++++|.++.+++. |. +.+|++|+|++|+++.+|.. +..
T Consensus 35 ~~l~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 35 ADTEKLDLQSTGL--------ATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp TTCCEEECTTSCC--------CCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCEEEccCCCc--------CccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc
Confidence 4677777777763 233344566666 777777777777766654 44 77777777777777766543 567
Q ss_pred CCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCc
Q 036657 370 AFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFKGCESLRSFPRG-I-HFVSPI 444 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~ 444 (481)
+++|++|++++| .+..+|. ++.+++|++|+++++ .+..+|. .++.+++|++|++++ +.+..+|.. + ++++|+
T Consensus 106 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 106 LTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCC
T ss_pred cCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCC
Confidence 777777777777 3666665 567777777777774 4556655 467777777777775 466666652 3 377777
Q ss_pred EEEeecCC
Q 036657 445 TIDFSFCV 452 (481)
Q Consensus 445 ~L~l~~c~ 452 (481)
.|++++++
T Consensus 183 ~L~l~~N~ 190 (251)
T 3m19_A 183 TITLFGNQ 190 (251)
T ss_dssp EEECCSCC
T ss_pred EEEeeCCc
Confidence 77777754
No 63
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=8.1e-15 Score=144.49 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=135.1
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD- 344 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~- 344 (481)
...++.+.+.... ...+.+..|.++++|+.|++++|.+ ..+|..+. + +|++|++++|.+..+|..
T Consensus 77 l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l---------~~l~~~~~--~-~L~~L~l~~n~i~~~~~~~ 142 (332)
T 2ft3_A 77 LQHLYALVLVNNK--ISKIHEKAFSPLRKLQKLYISKNHL---------VEIPPNLP--S-SLVELRIHDNRIRKVPKGV 142 (332)
T ss_dssp CTTCCEEECCSSC--CCEECGGGSTTCTTCCEEECCSSCC---------CSCCSSCC--T-TCCEEECCSSCCCCCCSGG
T ss_pred CCCCcEEECCCCc--cCccCHhHhhCcCCCCEEECCCCcC---------CccCcccc--c-cCCEEECCCCccCccCHhH
Confidence 3455555554433 2345577888899999999988873 34555443 3 677777777766666654
Q ss_pred CC-CCCceEEEcCCCCccc---ccccccCC--------------------CCCcEEeccCCCCCcccCC--CCCCCCCCE
Q 036657 345 FE-PENLIELNLPYSKVEQ---IWKGEKKA--------------------FKLKYIDISHSQQLVRMLD--LSETPNLER 398 (481)
Q Consensus 345 ~~-l~~L~~L~L~~~~i~~---lp~~~~~L--------------------~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~ 398 (481)
|. +.+|++|++++|.++. .|..+..+ ++|++|++++|. +..++. +..+++|++
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYR 221 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSC
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence 33 6666666666666542 22222222 577777887774 666653 889999999
Q ss_pred EeccCCCCCcccc-ccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCc----------ccccce
Q 036657 399 TNLLNCRDLACVR-SSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQI----------SGNIIE 466 (481)
Q Consensus 399 L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~----------~~~L~~ 466 (481)
|++++| .+..++ ..++.+++|+.|++++ +.+..+|..+. +++|+.|+++++. +..+|.. ..+++.
T Consensus 222 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 222 LGLGHN-QIRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp CBCCSS-CCCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSE
T ss_pred EECCCC-cCCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccc
Confidence 999996 455555 4789999999999997 57889998774 9999999999965 8887751 245689
Q ss_pred EeeeCcCCc
Q 036657 467 LKLWYTAIE 475 (481)
Q Consensus 467 L~L~~~~l~ 475 (481)
|++++|.+.
T Consensus 299 L~l~~N~~~ 307 (332)
T 2ft3_A 299 ISLFNNPVP 307 (332)
T ss_dssp EECCSSSSC
T ss_pred eEeecCccc
Confidence 999999886
No 64
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.3e-15 Score=136.98 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=70.2
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccc-cccccc
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQ-IWKGEK 368 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~-lp~~~~ 368 (481)
..+++|+.|++++|.+ ..+| ++..++ +|++|++++|.+..+|....+++|++|++++|.+.. .|..+.
T Consensus 41 ~~l~~L~~L~l~~n~i---------~~l~-~l~~l~-~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINV---------TDLT-GIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCC---------SCCT-TGGGCT-TCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCc---------cChH-HHhcCC-CCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhc
Confidence 4456666666666652 3444 455555 566666655554444422225555555555555543 344455
Q ss_pred CCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEE
Q 036657 369 KAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITI 446 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L 446 (481)
.+++|++|++++|. +.. .|. ++.+++|++|++++|..+..+| .++.+++|++|++++| .+..++....+++|++|
T Consensus 110 ~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEE
T ss_pred CCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCCCCCEE
Confidence 55555555555553 322 222 4455555555555543344443 3444555555555432 34443321124444444
Q ss_pred Eeec
Q 036657 447 DFSF 450 (481)
Q Consensus 447 ~l~~ 450 (481)
++++
T Consensus 187 ~l~~ 190 (197)
T 4ezg_A 187 YAFS 190 (197)
T ss_dssp EECB
T ss_pred EeeC
Confidence 4444
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=6.7e-15 Score=145.81 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=105.9
Q ss_pred cccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEe
Q 036657 321 LEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTN 400 (481)
Q Consensus 321 l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~ 400 (481)
+..++ +|++|++++|.+..+|....+.+|++|++++|.+..++. +..+++|++|++++|. +..+|.+..+++|++|+
T Consensus 173 ~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~ 249 (347)
T 4fmz_A 173 IANLT-DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLE 249 (347)
T ss_dssp GGGCT-TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEE
T ss_pred hccCC-CCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEE
Confidence 44555 666666666666666552236666677776666665544 6677888888888874 77777677888888888
Q ss_pred ccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccC-C---cccccceEeeeCcCCcc
Q 036657 401 LLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFP-Q---ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 401 L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp-~---~~~~L~~L~L~~~~l~~ 476 (481)
+++| .+..++ .+..+++|++|++++| .+..+|....+++|+.|++++|. +...+ . ...+|++|++++|.++.
T Consensus 250 l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 250 IGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCcccc
Confidence 8885 455553 5778888888888875 67776553358888888888875 54433 3 24577889999888877
Q ss_pred CCC
Q 036657 477 VPS 479 (481)
Q Consensus 477 lP~ 479 (481)
+|+
T Consensus 326 ~~~ 328 (347)
T 4fmz_A 326 IRP 328 (347)
T ss_dssp CGG
T ss_pred ccC
Confidence 654
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=157.22 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=84.9
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+.... ...+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.++.+|.. .
T Consensus 21 ~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~ 88 (520)
T 2z7x_B 21 QKTTILNISQNY--ISELWTSDILSLSKLRILIISHNRI--------QYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-P 88 (520)
T ss_dssp TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEECCSSCC--------CEEEGGGGTTCT-TCCEEECCSSCCCEEECC-C
T ss_pred ccccEEECCCCc--ccccChhhccccccccEEecCCCcc--------CCcChHHhhccc-CCCEEecCCCceeecCcc-c
Confidence 456666555443 3345678899999999999999984 445577888898 999999999999999988 8
Q ss_pred CCCceEEEcCCCCccc--ccccccCCCCCcEEeccCCC
Q 036657 347 PENLIELNLPYSKVEQ--IWKGEKKAFKLKYIDISHSQ 382 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~Ls~~~ 382 (481)
+.+|++|++++|.+.. +|..++.+++|++|++++|.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 8999999999999986 56789999999999998874
No 67
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=5.8e-15 Score=151.77 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=87.3
Q ss_pred cccccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccC-CCCC-
Q 036657 364 WKGEKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSF-PRGI- 438 (481)
Q Consensus 364 p~~~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~l-p~~~- 438 (481)
|..+..+++|++|++++|. +..++ . ++.+++|++|++++|. +..+ |..++.+++|++|++++| .+..+ |..+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 368 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFL 368 (455)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred hhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC-cccccChhhcc
Confidence 4457788999999999995 66664 3 8899999999999965 4544 667899999999999975 66666 5555
Q ss_pred CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCC
Q 036657 439 HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 439 ~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP 478 (481)
++++|++|++++|. +..+|.. +.+|++|++++|.++...
T Consensus 369 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 369 GLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCC
Confidence 49999999999964 8888862 457799999999986543
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=8.7e-15 Score=150.83 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=118.5
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~ 365 (481)
..+.++++|+.|++++|.+ ..+| ++..++ +|++|++++|.++.+| +. +.+|++|++++|.++.++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l---------~~~~-~l~~l~-~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSI---------TDMT-GIEKLT-GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp EEHHHHTTCCEEECCSSCC---------CCCT-TGGGCT-TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred cChhHcCCCCEEEccCCCc---------ccCh-hhcccC-CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-
Confidence 4567889999999999884 3455 688888 9999999999999987 55 999999999999999886
Q ss_pred cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcE
Q 036657 366 GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPIT 445 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~ 445 (481)
++.+++|++|++++| .+..+| ++.+++|++|++++| .+..++ ++.+++|+.|++++|..+..++ ...+++|+.
T Consensus 102 -~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~ 174 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTT 174 (457)
T ss_dssp -CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCE
T ss_pred -cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCcccccc-cccCCcCCE
Confidence 889999999999999 488886 999999999999995 466664 7777778888777765555552 123566666
Q ss_pred EEeecCCCCCccC
Q 036657 446 IDFSFCVNLTEFP 458 (481)
Q Consensus 446 L~l~~c~~L~~lp 458 (481)
|++++|. +..+|
T Consensus 175 L~ls~n~-l~~l~ 186 (457)
T 3bz5_A 175 LDCSFNK-ITELD 186 (457)
T ss_dssp EECCSSC-CCCCC
T ss_pred EECCCCc-cceec
Confidence 6666543 44444
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.61 E-value=1.7e-14 Score=148.45 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=59.7
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRD 406 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~ 406 (481)
+|++|++++|.++.+|....+.+|++|++++|.+..+|... .+|++|++++| .+..+|.++.+++|++|++++| .
T Consensus 174 ~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N-~ 248 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPELQNLPFLTTIYADNN-L 248 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-C
T ss_pred cccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccccCCCCCCCEEECCCC-c
Confidence 55555555555555553122555555555555555544322 35555555555 2445555555556666666553 3
Q ss_pred CccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC
Q 036657 407 LACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ 459 (481)
Q Consensus 407 l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~ 459 (481)
+..+|.. +++|+.|++++| .+..+|.. +++|+.|++++|. +..+|.
T Consensus 249 l~~l~~~---~~~L~~L~l~~N-~l~~l~~~--~~~L~~L~ls~N~-l~~l~~ 294 (454)
T 1jl5_A 249 LKTLPDL---PPSLEALNVRDN-YLTDLPEL--PQSLTFLDVSENI-FSGLSE 294 (454)
T ss_dssp CSSCCSC---CTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSEESC
T ss_pred CCccccc---ccccCEEECCCC-cccccCcc--cCcCCEEECcCCc-cCcccC
Confidence 4444432 245555555542 34444432 2445555555432 444333
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=1.2e-15 Score=160.69 Aligned_cols=177 Identities=13% Similarity=0.097 Sum_probs=125.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
..++.+.+..... ..+.+..|.++++|++|++++|.+ ....|+.+..++ +|++|++++|.+..+|+. |
T Consensus 26 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRI--------NTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp TTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCC--------CEECTTTTTTCT-TCCEEECTTSCCCSCCHHHH
T ss_pred CCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCc--------CccChhhccccc-cCCEEECCCCccCccCHHHh
Confidence 3455555544432 234456788888888888888874 344456777887 888888888888887765 5
Q ss_pred C-CCCceEEEcCCCCccc--ccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCC
Q 036657 346 E-PENLIELNLPYSKVEQ--IWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNL 420 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L 420 (481)
. +.+|++|++++|.+.. .|..+..+++|++|++++|..+..+|. ++++++|++|++++|......|..++.+++|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 5 8888888888888874 356788888888888888865777763 7888888888888866555567777777777
Q ss_pred CEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCc
Q 036657 421 SMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTE 456 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~ 456 (481)
++|+++++ ....+|... .+++|+.|++++|. +..
T Consensus 175 ~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~-l~~ 210 (549)
T 2z81_A 175 HHLTLHLS-ESAFLLEIFADILSSVRYLELRDTN-LAR 210 (549)
T ss_dssp EEEEEECS-BSTTHHHHHHHSTTTBSEEEEESCB-CTT
T ss_pred ceEecccC-cccccchhhHhhcccccEEEccCCc-ccc
Confidence 77777753 444444433 36777777777754 444
No 71
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=2e-14 Score=155.47 Aligned_cols=182 Identities=19% Similarity=0.231 Sum_probs=103.0
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecC-CccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKV 360 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i 360 (481)
+.+.+|..+++|+.|++++|.+ ...+| ..+..++ +|++|++++|.+..++.. |. +.+|++|++++|.+
T Consensus 396 ~~~~~~~~l~~L~~L~L~~N~l--------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 396 IESDAFSWLGHLEVLDLGLNEI--------GQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC--------EEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred EChhhhhCCCCCCEEeCCCCcC--------ccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 4456777788888888887764 33344 3555666 677777777666554433 33 55666666666554
Q ss_pred c---cccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc---------cccCCCCCCEEeee
Q 036657 361 E---QIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS---------SIENFNNLSMLCFK 426 (481)
Q Consensus 361 ~---~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~---------~i~~L~~L~~L~l~ 426 (481)
. .+|..+..+++|++|++++|. +..+|. ++++++|++|++++| .+..++. .++.+++|+.|+++
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred cccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECC
Confidence 3 345556666666666666663 555554 556666666666653 2333321 14555666666666
Q ss_pred CCCCCccCCCC-C-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCC
Q 036657 427 GCESLRSFPRG-I-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 427 ~c~~l~~lp~~-~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP 478 (481)
+ +.+..+|.. + ++++|+.|+++++ ++..+|.. ..+|+.|+|++|.|+.+|
T Consensus 545 ~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 545 S-NGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp S-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred C-CCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 4 355555543 2 3666666666553 35555542 234556666666665554
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=3.6e-14 Score=146.05 Aligned_cols=163 Identities=18% Similarity=0.128 Sum_probs=118.3
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFK 372 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 372 (481)
++|++|++++|.+ ..+| .+..++ +|++|++++|.++.+|..+ .+|++|++++|.++.+| .++.+++
T Consensus 131 ~~L~~L~L~~n~l---------~~lp-~~~~l~-~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~ 196 (454)
T 1jl5_A 131 PLLEYLGVSNNQL---------EKLP-ELQNSS-FLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQNLPF 196 (454)
T ss_dssp TTCCEEECCSSCC---------SSCC-CCTTCT-TCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred CCCCEEECcCCCC---------CCCc-ccCCCC-CCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-cccCCCC
Confidence 5677777777663 3356 477777 7778888777777777543 47778888877777776 5777888
Q ss_pred CcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCC
Q 036657 373 LKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCV 452 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~ 452 (481)
|++|++++|. +..+|.+. ++|++|++++| .+..+| .++.+++|++|++++ +.+..+|.. +++|+.|++++|.
T Consensus 197 L~~L~l~~N~-l~~l~~~~--~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~-N~l~~l~~~--~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 197 LTAIYADNNS-LKKLPDLP--LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADN-NLLKTLPDL--PPSLEALNVRDNY 268 (454)
T ss_dssp CCEEECCSSC-CSSCCCCC--TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS-SCCSSCCSC--CTTCCEEECCSSC
T ss_pred CCEEECCCCc-CCcCCCCc--CcccEEECcCC-cCCccc-ccCCCCCCCEEECCC-CcCCccccc--ccccCEEECCCCc
Confidence 8888888774 66666532 47788888875 455777 478888888888886 466667652 4788888888864
Q ss_pred CCCccCCcccccceEeeeCcCCccCC
Q 036657 453 NLTEFPQISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 453 ~L~~lp~~~~~L~~L~L~~~~l~~lP 478 (481)
+..+|..+.+|++|++++|.++.+|
T Consensus 269 -l~~l~~~~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 269 -LTDLPELPQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp -CSCCCCCCTTCCEEECCSSCCSEES
T ss_pred -ccccCcccCcCCEEECcCCccCccc
Confidence 7778887788888888888887654
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=145.26 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=141.5
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCcc--ccccccccceeeccccCCCCCC-----CC-CCCCceEEEcCCCCcc
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGL--EYLPEELRYLHWHEYSLKMLPF-----DF-EPENLIELNLPYSKVE 361 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l--~~l~~~Lr~L~l~~~~l~~lP~-----~~-~l~~L~~L~L~~~~i~ 361 (481)
..+++|+.|++++|.+ ....|..+ ..++ +|++|++++|.+..... .+ .+.+|++|++++|++.
T Consensus 88 ~~~~~L~~L~l~~n~l--------~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 158 (310)
T 4glp_A 88 LAYSRLKELTLEDLKI--------TGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP 158 (310)
T ss_dssp HHHSCCCEEEEESCCC--------BSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC
T ss_pred cccCceeEEEeeCCEe--------ccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc
Confidence 3457799999999985 45667776 7788 99999999999886322 12 3889999999999999
Q ss_pred ccc-ccccCCCCCcEEeccCCCCCcc--cCC---CCCCCCCCEEeccCCCCCcccccc----ccCCCCCCEEeeeCCCCC
Q 036657 362 QIW-KGEKKAFKLKYIDISHSQQLVR--MLD---LSETPNLERTNLLNCRDLACVRSS----IENFNNLSMLCFKGCESL 431 (481)
Q Consensus 362 ~lp-~~~~~L~~L~~L~Ls~~~~l~~--lp~---~~~l~~L~~L~L~~c~~l~~lp~~----i~~L~~L~~L~l~~c~~l 431 (481)
.++ ..+..+++|++|++++|..... ++. ++.+++|++|++++| .+..+|.. ++.+++|++|++++ +.+
T Consensus 159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l 236 (310)
T 4glp_A 159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH-NSL 236 (310)
T ss_dssp CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT-SCC
T ss_pred hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC-CCC
Confidence 776 5688999999999999963321 332 578999999999996 46655542 57889999999997 567
Q ss_pred ccC-CCCCC-C---CCCcEEEeecCCCCCccCCc-ccccceEeeeCcCCccCCC
Q 036657 432 RSF-PRGIH-F---VSPITIDFSFCVNLTEFPQI-SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 432 ~~l-p~~~~-l---~~L~~L~l~~c~~L~~lp~~-~~~L~~L~L~~~~l~~lP~ 479 (481)
..+ |..+. + ++|++|++++|. +..+|.. ..+|+.|+|++|.|+.+|.
T Consensus 237 ~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 237 RATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCC
T ss_pred CccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCch
Confidence 766 65553 3 799999999965 8899984 5689999999999998764
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=5.3e-15 Score=155.75 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=147.2
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc-ccC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG-EKK 369 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~-~~~ 369 (481)
++|++|++++|.+ ....|..+..++ +|++|++++|.+..+|+ .|. +.+|++|++++|.+..++.. +..
T Consensus 26 ~~L~~L~Ls~n~l--------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKI--------TYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSCC--------CEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCccEEECcCCcc--------CccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 6899999999985 444567899999 99999999999998875 465 99999999999999988776 999
Q ss_pred CCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCc
Q 036657 370 AFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVR-SSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPI 444 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~ 444 (481)
+++|++|++++|. +.. .|. ++++++|++|++++|..+..+| ..++++++|++|+++++.--...|..+. +++|+
T Consensus 97 l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp CTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 9999999999995 664 344 8999999999999987678887 4799999999999998654444676664 99999
Q ss_pred EEEeecCCCCCccCCc----ccccceEeeeCcCCccC
Q 036657 445 TIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEV 477 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~l 477 (481)
+|+++++. +..+|.. +.+|++|++++|.++.+
T Consensus 176 ~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 176 HLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EEEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred eEecccCc-ccccchhhHhhcccccEEEccCCccccc
Confidence 99999865 6677653 56889999999999875
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=152.67 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=65.4
Q ss_pred cCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCCc--cccccccCCCCCCEEeeeCCCCCcc-CCCC-C-CC
Q 036657 368 KKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDLA--CVRSSIENFNNLSMLCFKGCESLRS-FPRG-I-HF 440 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l~--~lp~~i~~L~~L~~L~l~~c~~l~~-lp~~-~-~l 440 (481)
..+++|++|++++|. +.. +|. ++.+++|++|++++|.... .+|..++.+++|++|++++| .+.. +|.. + .+
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccC
Confidence 456677777777774 443 454 7788888888888754322 45566788888888888864 4554 6643 2 35
Q ss_pred CCCcEEEeecCCCCCccCCcc-cccceEeeeCcCCccCCC
Q 036657 441 VSPITIDFSFCVNLTEFPQIS-GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 441 ~~L~~L~l~~c~~L~~lp~~~-~~L~~L~L~~~~l~~lP~ 479 (481)
++|++|++++|.-...+|..+ .+|+.|++++|+|+.+|.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~ 438 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK 438 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCG
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccch
Confidence 566666666554223333322 344555555555544443
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=1e-14 Score=154.23 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=86.2
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..+. ...+.+..|.++++|++|++++|.+ ....|+.+..++ +|++|++++|.++.+|.. .
T Consensus 52 ~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l--------~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~ 119 (562)
T 3a79_B 52 PRTKALSLSQNS--ISELRMPDISFLSELRVLRLSHNRI--------RSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-P 119 (562)
T ss_dssp TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEECCSCCC--------CEECTTTTTTCT-TCCEEECTTSCCCEECSC-C
T ss_pred CCcCEEECCCCC--ccccChhhhccCCCccEEECCCCCC--------CcCCHHHhCCCC-CCCEEECCCCcCCccCcc-c
Confidence 456666555443 3456678899999999999999984 444577889998 999999999999999988 8
Q ss_pred CCCceEEEcCCCCccccc--ccccCCCCCcEEeccCCC
Q 036657 347 PENLIELNLPYSKVEQIW--KGEKKAFKLKYIDISHSQ 382 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp--~~~~~L~~L~~L~Ls~~~ 382 (481)
+.+|++|++++|.+..+| ..+.++++|++|++++|.
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 999999999999999765 679999999999999884
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=2.2e-15 Score=156.55 Aligned_cols=172 Identities=11% Similarity=0.016 Sum_probs=140.9
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCC
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAF 371 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~ 371 (481)
+++|+.|++++|.+ ....|..+..++ +|++|++++|.+..+++...+.+|++|+|++|.++.+|.. +
T Consensus 33 ~~~L~~L~Ls~n~l--------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPL--------SQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----P 99 (487)
T ss_dssp GGGCCEEECCSSCC--------CCCCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----T
T ss_pred CCCccEEEeeCCcC--------CCCCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----C
Confidence 34899999999984 334456888999 9999999999998777633399999999999999988753 8
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCcc-CCCCC--CCCCCcEEEe
Q 036657 372 KLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRS-FPRGI--HFVSPITIDF 448 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~-lp~~~--~l~~L~~L~l 448 (481)
+|++|++++|. +..+|. ..+++|++|++++|......|..++++++|++|+++++ .+.. .|..+ .+++|++|++
T Consensus 100 ~L~~L~L~~N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 100 SIETLHAANNN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TCCEEECCSSC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECcCCc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEec
Confidence 99999999995 776664 45789999999996544445668999999999999975 6665 44444 4899999999
Q ss_pred ecCCCCCccCCc--ccccceEeeeCcCCccCCCC
Q 036657 449 SFCVNLTEFPQI--SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 449 ~~c~~L~~lp~~--~~~L~~L~L~~~~l~~lP~s 480 (481)
++|. +..+|.. +.+|+.|+|++|.|+.+|++
T Consensus 177 s~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 177 QYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp TTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG
T ss_pred CCCc-cccccccccCCCCCEEECCCCCCCCCCHh
Confidence 9976 8888764 67899999999999998874
No 78
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=5.2e-15 Score=134.67 Aligned_cols=151 Identities=9% Similarity=0.067 Sum_probs=123.3
Q ss_pred ccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEE
Q 036657 322 EYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVR-MLD-LSETPNLERT 399 (481)
Q Consensus 322 ~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L 399 (481)
..++ +|++|+++++.++.+|....+.+|++|++++|.+..++ .+..+++|++|++++|. +.. .|. ++.+++|++|
T Consensus 41 ~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMN-SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHH-TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEE
T ss_pred hhcC-CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEE
Confidence 5566 89999999999999994333999999999999887765 68889999999999995 664 444 9999999999
Q ss_pred eccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCcc
Q 036657 400 NLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 400 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~ 476 (481)
++++|......|..++.+++|++|++++|..+..+|...++++|+.|++++|. +..+|. .+++|++|++++|.|+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcccCC
Confidence 99997655557888999999999999987668888854459999999999975 777764 35678999999999864
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=3.3e-14 Score=151.42 Aligned_cols=180 Identities=19% Similarity=0.172 Sum_probs=112.3
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..+.... +.. .+++|++|++++|.+ ..+|. .++ +|++|++++|.++.+|. .
T Consensus 61 ~~L~~L~L~~N~l~~--lp~----~l~~L~~L~Ls~N~l---------~~lp~---~l~-~L~~L~Ls~N~l~~l~~--~ 119 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--LPA----LPPELRTLEVSGNQL---------TSLPV---LPP-GLLELSIFSNPLTHLPA--L 119 (622)
T ss_dssp TTCSEEEECSCCCSC--CCC----CCTTCCEEEECSCCC---------SCCCC---CCT-TCCEEEECSCCCCCCCC--C
T ss_pred CCCcEEEecCCCCCC--CCC----cCCCCCEEEcCCCcC---------CcCCC---CCC-CCCEEECcCCcCCCCCC--C
Confidence 455555555443322 222 467788888887773 34554 344 78888888888887777 4
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCC---C--------------CCCCEEeccCCCCCc
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSE---T--------------PNLERTNLLNCRDLA 408 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~---l--------------~~L~~L~L~~c~~l~ 408 (481)
+.+|++|++++|+++.+|.. +++|++|++++| .+..+|. +.+ + ++|+.|++++| .+.
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~ 194 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLA 194 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCS
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCC
Confidence 67788888888888777764 477888888877 4666664 211 1 44444444442 233
Q ss_pred cccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCC
Q 036657 409 CVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 409 ~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~ 479 (481)
.+|.. +++|+.|++++ +.+..+|. .+++|+.|++++| .+..+|..+.+|++|+|++|.|+.+|.
T Consensus 195 ~l~~~---~~~L~~L~L~~-N~l~~l~~--~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~ 258 (622)
T 3g06_A 195 SLPTL---PSELYKLWAYN-NRLTSLPA--LPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPM 258 (622)
T ss_dssp CCCCC---CTTCCEEECCS-SCCSSCCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCc---cchhhEEECcC-CcccccCC--CCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCc
Confidence 33322 24455555554 24444443 2467888888875 477788777788888888888887775
No 80
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.58 E-value=1.6e-14 Score=153.98 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=98.4
Q ss_pred ccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC---------------
Q 036657 283 HLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE--------------- 346 (481)
Q Consensus 283 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~--------------- 346 (481)
.+.+..|.++++|+.|++++|. ...+|..+..++ +|++|++++|.+..+++ .+.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~---------l~~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATH---------LSELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSC---------CSCCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred ccCHHHhccccCCCEEeccCCc---------cCCCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 3455567777777777777766 335566666666 66666666665554422 222
Q ss_pred -----------CCCceEEEcCCCCcccc---cccccCCCCCcEEeccCCCCCccc-CC-CCCCCCCCEEeccCCCCCccc
Q 036657 347 -----------PENLIELNLPYSKVEQI---WKGEKKAFKLKYIDISHSQQLVRM-LD-LSETPNLERTNLLNCRDLACV 410 (481)
Q Consensus 347 -----------l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~Ls~~~~l~~l-p~-~~~l~~L~~L~L~~c~~l~~l 410 (481)
+.+|++|++++|.+..+ |..+..+++|++|++++|. +..+ |. ++.+++|++|++++|......
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 44455555555544433 3344555555555555553 3333 22 555555555555554322222
Q ss_pred ccc-ccCCCCCCEEeeeCCCCCccC-CCCC-CCCCCcEEEeecCCCCCc--cCC-----cccccceEeeeCcCCccCC
Q 036657 411 RSS-IENFNNLSMLCFKGCESLRSF-PRGI-HFVSPITIDFSFCVNLTE--FPQ-----ISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 411 p~~-i~~L~~L~~L~l~~c~~l~~l-p~~~-~l~~L~~L~l~~c~~L~~--lp~-----~~~~L~~L~L~~~~l~~lP 478 (481)
|.. ++.+++|+.|++++| .+... |..+ ++++|++|++++|. +.. +|. .+.+|++|++++|.++.++
T Consensus 417 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp TCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred cchhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccCccC
Confidence 222 556666666666654 33333 3333 36777777777754 332 221 2346677777777776664
No 81
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.58 E-value=1.9e-14 Score=148.70 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=103.2
Q ss_pred ccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEE
Q 036657 320 GLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERT 399 (481)
Q Consensus 320 ~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L 399 (481)
.+..++ +|++|++++|.+..+++...+.+|++|++++|.+..++. +..+++|+.|++++|. +..+|.++.+++|+.|
T Consensus 238 ~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 314 (466)
T 1o6v_A 238 TLASLT-NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYL 314 (466)
T ss_dssp GGGGCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEE
T ss_pred hhhcCC-CCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEE
Confidence 345555 677777777766666653336677777777777776655 6677777777777773 6666667777777777
Q ss_pred eccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccC
Q 036657 400 NLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEV 477 (481)
Q Consensus 400 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~l 477 (481)
++++|. +..++. ++.+++|+.|++++| .+..++...++++|+.|++++|. +..++. .+.+|+.|++++|.++.+
T Consensus 315 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 315 TLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp ECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCEEEECC
T ss_pred ECcCCc-CCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCCcccCC
Confidence 777753 444443 677778888888764 56666544458888888888865 444443 245668888888888776
Q ss_pred CCC
Q 036657 478 PSS 480 (481)
Q Consensus 478 P~s 480 (481)
|..
T Consensus 391 p~~ 393 (466)
T 1o6v_A 391 PVN 393 (466)
T ss_dssp CBC
T ss_pred chh
Confidence 643
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.58 E-value=7.9e-15 Score=155.02 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=103.8
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~ 346 (481)
.++.+.+..+. ...+.+..|.++++|++|++++|.+ ....+..+..++ +|++|++++|.++.+|+ .|.
T Consensus 29 ~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 29 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCCEEECCSCC--CCEECTTTTTTCSSCCEEECTTCCC--------CEECTTTTTTCT-TCCEEECTTCCCCEECTTTTT
T ss_pred cccEEEccCCc--cCccChhHhhCCCCceEEECCCCcC--------CccCcccccCch-hCCEEeCcCCcCCccCHhhhc
Confidence 45555444333 3345566788888899998888873 333455677788 88888888888888774 455
Q ss_pred -CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCccccccccCCCCC-
Q 036657 347 -PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVRSSIENFNNL- 420 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L- 420 (481)
+.+|++|++++|+++.++. .++.+++|++|++++|. +.. +|. ++++++|++|++++|......|..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 8888888888888888776 58888888888888884 554 566 8888888888888854322233445555555
Q ss_pred ---CEEeeeC
Q 036657 421 ---SMLCFKG 427 (481)
Q Consensus 421 ---~~L~l~~ 427 (481)
+.|++++
T Consensus 177 ~~~~~L~l~~ 186 (570)
T 2z63_A 177 LLNLSLDLSL 186 (570)
T ss_dssp TCCCEEECTT
T ss_pred hhhhhcccCC
Confidence 5555554
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=7.8e-15 Score=142.05 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=139.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+....... + ..+..+++|+.|++++|.+ ..++. +..++ +|++|++++|.++.+|....
T Consensus 46 ~~L~~L~l~~~~i~~--~--~~~~~l~~L~~L~L~~n~l---------~~~~~-l~~l~-~L~~L~l~~n~l~~~~~l~~ 110 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS--V--QGIQYLPNVTKLFLNGNKL---------TDIKP-LANLK-NLGWLFLDENKVKDLSSLKD 110 (291)
T ss_dssp HTCCEEECTTSCCCC--C--TTGGGCTTCCEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCGGGGTT
T ss_pred CcccEEEccCCCccc--C--hhHhcCCCCCEEEccCCcc---------CCCcc-cccCC-CCCEEECCCCcCCCChhhcc
Confidence 345555555443322 2 3488899999999999984 34454 88888 99999999999999887445
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
+.+|++|++++|++..++ .+..+++|++|++++|. +..++.++.+++|++|++++| .+..++. +..+++|++|+++
T Consensus 111 l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECC
Confidence 999999999999999874 68899999999999994 888877999999999999996 5677765 9999999999999
Q ss_pred CCCCCccCCCCCCCCCCcEEEeecCCCCCccC
Q 036657 427 GCESLRSFPRGIHFVSPITIDFSFCVNLTEFP 458 (481)
Q Consensus 427 ~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp 458 (481)
+ +.+..+|....+++|+.|++++|+ +...|
T Consensus 187 ~-N~i~~l~~l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 187 K-NHISDLRALAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp S-SCCCBCGGGTTCTTCSEEEEEEEE-EECCC
T ss_pred C-CcCCCChhhccCCCCCEEECcCCc-ccCCc
Confidence 7 578888874469999999999865 44444
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.57 E-value=3e-14 Score=150.70 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=60.9
Q ss_pred cCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCCcc---ccccccCCCCCCEEeeeCCCCCcc-CCCCC--C
Q 036657 368 KKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDLAC---VRSSIENFNNLSMLCFKGCESLRS-FPRGI--H 439 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l~~---lp~~i~~L~~L~~L~l~~c~~l~~-lp~~~--~ 439 (481)
..+++|++|++++|. +.. +|. ++.+++|++|++++| .+.. +|..++.+++|++|+++++ .+.. +|... .
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcC
Confidence 456677777777774 443 444 777777777777774 3443 3445777778888888764 4544 66432 2
Q ss_pred CCCCcEEEeecCCCCCccCCcc-cccceEeeeCcCCccCCC
Q 036657 440 FVSPITIDFSFCVNLTEFPQIS-GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 440 l~~L~~L~l~~c~~L~~lp~~~-~~L~~L~L~~~~l~~lP~ 479 (481)
+++|+.|++++|.--..+|..+ .+|+.|+|++|+|+.+|.
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~ 467 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPK 467 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCT
T ss_pred cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccCh
Confidence 5555555555543222333322 244444444444444443
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=3.7e-14 Score=134.12 Aligned_cols=166 Identities=18% Similarity=0.258 Sum_probs=102.9
Q ss_pred CcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccCCC
Q 036657 295 LRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKKAF 371 (481)
Q Consensus 295 Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~L~ 371 (481)
.+.+++.++. ...+|..+. .+++.|+++++.+..++.. |. +.+|++|+|++|.+..++.. +..++
T Consensus 16 ~~~l~~~~~~---------l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 16 KKEVDCQGKS---------LDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GTEEECTTCC---------CSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CeEEecCCCC---------ccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC
Confidence 4555555554 334554332 3677777777777666553 44 67777777777777665443 56677
Q ss_pred CCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEE
Q 036657 372 KLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITI 446 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L 446 (481)
+|++|++++|. +..+|. ++.+++|++|+++++ .+..+|.. ++.+++|++|++++ +.++.+|.. + ++++|++|
T Consensus 84 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 84 ELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred cCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEE
Confidence 77777777763 666654 567777777777763 45555544 46677777777775 466666653 3 36777777
Q ss_pred EeecCCCCCccCC----cccccceEeeeCcCCcc
Q 036657 447 DFSFCVNLTEFPQ----ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 447 ~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~ 476 (481)
+++++. +..+|. .+.+|+.|+|++|.+..
T Consensus 161 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 161 SLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 777743 666554 13456677777766644
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=2.1e-15 Score=143.85 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=126.1
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~ 366 (481)
.+..+++|+.|++++|. ...++ .+..++ +|++|++++|.++.+|. +. +.+|++|++++|+++.+|..
T Consensus 36 ~~~~l~~L~~L~l~~n~---------i~~l~-~l~~l~-~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN---------IQSLA-GMQFFT-NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp CHHHHTTCSEEECTTSC---------CCCCT-TGGGCT-TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC
T ss_pred chhhcCcCcEEECcCCC---------cccch-HHhhCC-CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc
Confidence 57889999999999887 34556 678888 99999999999999888 55 89999999999999988764
Q ss_pred ccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEE
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITI 446 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L 446 (481)
.. ++|++|++++| .+..+|.++.+++|++|++++| .+..+| .++.+++|+.|++++ +.+..++....+++|+.|
T Consensus 104 ~~--~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~~l~~l~~L~~L 177 (263)
T 1xeu_A 104 PS--ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWI 177 (263)
T ss_dssp CC--SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTT-SCCCBCTTSTTCCCCCEE
T ss_pred cc--CcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCC-CcCcchHHhccCCCCCEE
Confidence 44 89999999999 4888888999999999999985 577776 788999999999997 577777443459999999
Q ss_pred EeecCCCCCccC
Q 036657 447 DFSFCVNLTEFP 458 (481)
Q Consensus 447 ~l~~c~~L~~lp 458 (481)
+++++. +...|
T Consensus 178 ~l~~N~-~~~~~ 188 (263)
T 1xeu_A 178 DLTGQK-CVNEP 188 (263)
T ss_dssp EEEEEE-EECCC
T ss_pred eCCCCc-ccCCc
Confidence 999865 55444
No 87
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=2.8e-14 Score=147.37 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=139.5
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDF 345 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~ 345 (481)
...++.+.+........ ..+.++++|+.|++++|.+ ..++. +..++ +|+.|++++|.++.++...
T Consensus 176 l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l---------~~~~~-~~~l~-~L~~L~l~~n~l~~~~~l~ 240 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQI---------SDITP-LGILT-NLDELSLNGNQLKDIGTLA 240 (466)
T ss_dssp CTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCC---------CCCGG-GGGCT-TCCEEECCSSCCCCCGGGG
T ss_pred CCCCCEEECcCCcCCCC----hhhccCCCCCEEEecCCcc---------ccccc-ccccC-CCCEEECCCCCcccchhhh
Confidence 34555555554433221 3478888888888888773 22222 56666 8888888888888876444
Q ss_pred CCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEee
Q 036657 346 EPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCF 425 (481)
Q Consensus 346 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l 425 (481)
.+.+|++|++++|.+..++. +..+++|++|++++|. +..+|.+..+++|++|++++| .+..++. ++.+++|+.|++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L 316 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTL 316 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEEC
T ss_pred cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEEC
Confidence 48888888888888887765 7788888888888884 777777888888888888885 4555654 788888888888
Q ss_pred eCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccCC
Q 036657 426 KGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 426 ~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP 478 (481)
++| .+..++....+++|+.|++++|. +..+|. .+.+|+.|++++|.++.++
T Consensus 317 ~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 317 YFN-NISDISPVSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CSS-CCSCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred cCC-cCCCchhhccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCccCccc
Confidence 875 56666553358888888888874 776664 2457788888888887655
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.4e-14 Score=143.95 Aligned_cols=199 Identities=14% Similarity=0.170 Sum_probs=116.5
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-C
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
.++.+.+..+.. ..+.+.+|.++++|+.|++++|.+ ...+|. .|..++.-++.+.+.++.+..+|+. |
T Consensus 31 ~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i--------~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 31 NAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDV--------LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp TCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTT--------CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred CCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCC--------CCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 455555554433 346677899999999999998874 233443 4555662333455556666666544 4
Q ss_pred C-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCC-CCCEEeccCCCCCccccccccCCCCC
Q 036657 346 E-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETP-NLERTNLLNCRDLACVRSSIENFNNL 420 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~-~L~~L~L~~c~~l~~lp~~i~~L~~L 420 (481)
. +.+|++|++++|++..+|.. +....++..|++.++..+..+|. +..+. .|+.|++++ +.+..+|..+....+|
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccch
Confidence 4 67777777777776666543 33445556666655545555554 44433 455666665 3455566555555566
Q ss_pred CEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCC-cccccceEeee-CcCCccCC
Q 036657 421 SMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQ-ISGNIIELKLW-YTAIEEVP 478 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~-~~~l~~lP 478 (481)
+.|++.+++.++.+|... ++++|+.|+++++ +++.+|. .+.+|+.|.+. .++++.+|
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCC
Confidence 666666556666666533 3666666666664 3666654 35555555544 34455555
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=2.8e-15 Score=146.98 Aligned_cols=177 Identities=10% Similarity=0.036 Sum_probs=143.7
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~ 365 (481)
...+..+++|+.|++++|.+ ....|..+..++ +|++|++++|.+..+++...+.+|++|++++|.++.++.
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 97 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPL--------SQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV 97 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCC--------CCCCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE
T ss_pred HHHhccCCCCCEEECcCCcc--------CcCCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC
Confidence 45667788999999999984 333446788888 999999999999877763349999999999999998774
Q ss_pred cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCC-CCC--CCC
Q 036657 366 GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFP-RGI--HFV 441 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp-~~~--~l~ 441 (481)
.++|++|++++|. +..++. ..+++|++|++++|. +..+ |..++.+++|++|+++++ .+..++ ..+ .++
T Consensus 98 ----~~~L~~L~l~~n~-l~~~~~-~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 98 ----GPSIETLHAANNN-ISRVSC-SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSD 169 (317)
T ss_dssp ----CTTCCEEECCSSC-CSEEEE-CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTT
T ss_pred ----CCCcCEEECCCCc-cCCcCc-cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccC
Confidence 4899999999995 777764 347899999999964 5555 457889999999999974 666654 333 389
Q ss_pred CCcEEEeecCCCCCccCCc--ccccceEeeeCcCCccCCCC
Q 036657 442 SPITIDFSFCVNLTEFPQI--SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 442 ~L~~L~l~~c~~L~~lp~~--~~~L~~L~L~~~~l~~lP~s 480 (481)
+|++|++++|. +..+|.. ..+|++|+|++|.++.+|+.
T Consensus 170 ~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 170 TLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp TCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG
T ss_pred cCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchhh
Confidence 99999999975 8888764 67899999999999998864
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.55 E-value=3.8e-14 Score=153.29 Aligned_cols=149 Identities=21% Similarity=0.210 Sum_probs=103.3
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
..++.+.+..... ..+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.++.+|.. |
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTI--------SKLEPELCQKLP-MLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCC--------CCCCTTHHHHCT-TCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCcc--------CccCHHHHhccc-CcCEEECCCCccCccChhhh
Confidence 3556555554332 335566788888888888888774 334466677777 888888888888888874 5
Q ss_pred C-CCCceEEEcCCCCccccc-ccccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCCccccc-cc--cCCC
Q 036657 346 E-PENLIELNLPYSKVEQIW-KGEKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDLACVRS-SI--ENFN 418 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l~~lp~-~i--~~L~ 418 (481)
. +.+|++|++++|++..++ ..+..+++|++|++++|. +..++ . ++++++|++|++++|. +..++. .+ ..++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANS 171 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTC
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccc
Confidence 5 888888888888888776 457888888888888885 44443 3 7788888888888753 444433 22 2446
Q ss_pred CCCEEeeeCC
Q 036657 419 NLSMLCFKGC 428 (481)
Q Consensus 419 ~L~~L~l~~c 428 (481)
+|++|+++++
T Consensus 172 ~L~~L~L~~n 181 (680)
T 1ziw_A 172 SLKKLELSSN 181 (680)
T ss_dssp EESEEECTTC
T ss_pred cccEEECCCC
Confidence 6777777654
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=2.6e-14 Score=158.50 Aligned_cols=149 Identities=20% Similarity=0.348 Sum_probs=103.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceec-CCccccccccccceeeccccCCCC-CCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHL-DQGLEYLPEELRYLHWHEYSLKML-PFD 344 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-P~~ 344 (481)
..++.+.+..+.. ..+.+..|.++++|++|++++|.. ...+ |..+..++ +|++|++++|.+..+ |..
T Consensus 24 ~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~--------~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 24 NTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYT--------PLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp TTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCC--------CCEECTTTTSSCT-TCCEEECTTCCCCEECTTS
T ss_pred CCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCC--------ccccCHHHhcCCC-CCCEEECCCCcCcccCHhH
Confidence 4566665554433 345567788888899999888753 3445 66788888 888888888888876 556
Q ss_pred CC-CCCceEEEcCCCCccc-cccc--ccCCCCCcEEeccCCCCCccc-C-C-CCCCCCCCEEeccCCCCCccccccccCC
Q 036657 345 FE-PENLIELNLPYSKVEQ-IWKG--EKKAFKLKYIDISHSQQLVRM-L-D-LSETPNLERTNLLNCRDLACVRSSIENF 417 (481)
Q Consensus 345 ~~-l~~L~~L~L~~~~i~~-lp~~--~~~L~~L~~L~Ls~~~~l~~l-p-~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L 417 (481)
|. +.+|++|+|++|.+.. +|.. +..+++|++|++++|. +..+ | . ++++++|++|+++++..-...|..++.+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 66 8888888888888875 4554 7888888888888885 5544 2 2 7888888888888864333334444443
Q ss_pred --CCCCEEeeeC
Q 036657 418 --NNLSMLCFKG 427 (481)
Q Consensus 418 --~~L~~L~l~~ 427 (481)
++|+.|++++
T Consensus 172 ~~~~L~~L~L~~ 183 (844)
T 3j0a_A 172 QGKTLSFFSLAA 183 (844)
T ss_dssp HHCSSCCCEECC
T ss_pred cCCccceEECCC
Confidence 4444444443
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=5.4e-14 Score=128.94 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=86.3
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-cc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EK 368 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~ 368 (481)
++|+.|++++|.+ ..++. .+..++ +|++|++++|.++.+|.. |. +.+|++|++++|+++.+|.. +.
T Consensus 28 ~~l~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 28 AQTTYLDLETNSL---------KSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp TTCSEEECCSSCC---------CCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEEcCCCcc---------CcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 4566666666653 22332 345555 666666666666666554 23 66666666666666665544 45
Q ss_pred CCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCCCCCCCcE
Q 036657 369 KAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGIHFVSPIT 445 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~ 445 (481)
.+++|++|++++|. +..+|. +..+++|++|+++++ .+..+|.. +..+++|++|+++++. + ...+++|+.
T Consensus 98 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-~-----~~~~~~l~~ 169 (208)
T 2o6s_A 98 KLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP-W-----DCTCPGIRY 169 (208)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC-B-----CCCTTTTHH
T ss_pred CccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC-e-----ecCCCCHHH
Confidence 66666666666663 555554 566666666666663 34444443 5556666666666531 1 112445666
Q ss_pred EEeecCCCCCccCCccccc
Q 036657 446 IDFSFCVNLTEFPQISGNI 464 (481)
Q Consensus 446 L~l~~c~~L~~lp~~~~~L 464 (481)
|+++++..-..+|..++++
T Consensus 170 L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 170 LSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHHHHHCTTTBBCTTSSB
T ss_pred HHHHHHhCCceeeccCccc
Confidence 6665544444566555555
No 93
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.54 E-value=3e-14 Score=150.62 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=119.3
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc--c
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK--G 366 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~--~ 366 (481)
..+++|+.|++++|.+. .....|..+..++ +|++|++++|.+..+|..+. +.+|++|++++|.+...+. .
T Consensus 344 ~~~~~L~~L~l~~n~l~------~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLS------FKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCTTCCEEECCSSCCB------EEEEEEHHHHTCS-CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccCCCCCEEeCcCCccC------ccccccccccccC-ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence 45566666666665520 0111244556666 78888888777777776654 7788888888887776543 4
Q ss_pred ccCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCC-ccccccccCCCCCCEEeeeCCCCCccC-CCCCC-CC
Q 036657 367 EKKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDL-ACVRSSIENFNNLSMLCFKGCESLRSF-PRGIH-FV 441 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l-~~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~~~-l~ 441 (481)
+..+++|++|++++|. +.. .|. ++++++|++|++++|... ..+|..++.+++|+.|++++| .+..+ |..+. ++
T Consensus 417 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 417 FLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS 494 (570)
T ss_dssp TTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred hhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhccc
Confidence 6778888888888875 444 444 777888888888886533 357777888888888888875 45555 55553 78
Q ss_pred CCcEEEeecCCCCCccCC-c---ccccceEeeeCcCCcc
Q 036657 442 SPITIDFSFCVNLTEFPQ-I---SGNIIELKLWYTAIEE 476 (481)
Q Consensus 442 ~L~~L~l~~c~~L~~lp~-~---~~~L~~L~L~~~~l~~ 476 (481)
+|++|++++|. +..+|. . ..+|+.|++++|.+..
T Consensus 495 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 495 SLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccC
Confidence 88888888864 666654 2 3466788888887754
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=3.4e-14 Score=135.44 Aligned_cols=148 Identities=19% Similarity=0.169 Sum_probs=111.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+....... +. .+..+++|+.|++++|.+ ..++. +..++ +|++|++++|.++.+|....
T Consensus 41 ~~L~~L~l~~n~i~~--l~--~l~~l~~L~~L~L~~N~i---------~~~~~-l~~l~-~L~~L~L~~N~l~~l~~~~~ 105 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS--LA--GMQFFTNLKELHLSHNQI---------SDLSP-LKDLT-KLEELSVNRNRLKNLNGIPS 105 (263)
T ss_dssp TTCSEEECTTSCCCC--CT--TGGGCTTCCEEECCSSCC---------CCCGG-GTTCS-SCCEEECCSSCCSCCTTCCC
T ss_pred CcCcEEECcCCCccc--ch--HHhhCCCCCEEECCCCcc---------CCChh-hccCC-CCCEEECCCCccCCcCcccc
Confidence 445555555443322 22 678888899999988873 34454 77777 88999999888888887655
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
.+|++|++++|+++.++ .+..+++|++|++++|. +..+|.++.+++|++|++++| .+..+ ..+..+++|+.|+++
T Consensus 106 -~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLT 180 (263)
T ss_dssp -SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEE
T ss_pred -CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCC
Confidence 88899999998888875 58888889999998884 888877888888999999885 45555 568888889999888
Q ss_pred CCCCCccCC
Q 036657 427 GCESLRSFP 435 (481)
Q Consensus 427 ~c~~l~~lp 435 (481)
++ .+...|
T Consensus 181 ~N-~~~~~~ 188 (263)
T 1xeu_A 181 GQ-KCVNEP 188 (263)
T ss_dssp EE-EEECCC
T ss_pred CC-cccCCc
Confidence 63 455444
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1e-13 Score=145.99 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=77.7
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCC
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKA 370 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L 370 (481)
.+++|+.|++++|.+ ..+|. +. .+|++|++++|.++.+|. .+.+|++|++++|.++.+|. .+
T Consensus 98 ~l~~L~~L~Ls~N~l---------~~ip~-l~---~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l 159 (571)
T 3cvr_A 98 LPASLEYLDACDNRL---------STLPE-LP---ASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LP 159 (571)
T ss_dssp CCTTCCEEECCSSCC---------SCCCC-CC---TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CC
T ss_pred ccCCCCEEEccCCCC---------CCcch-hh---cCCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cC
Confidence 355666666666552 22444 22 256666666666666665 45566666666666666554 45
Q ss_pred CCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCC-------CEEeeeCCCCCccCCCCC-CCCC
Q 036657 371 FKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNL-------SMLCFKGCESLRSFPRGI-HFVS 442 (481)
Q Consensus 371 ~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L-------~~L~l~~c~~l~~lp~~~-~l~~ 442 (481)
++|++|++++|. +..+|.++ ++|+.|++++| .+..+|. ++. +| +.|++++ +.++.+|..+ .+++
T Consensus 160 ~~L~~L~Ls~N~-L~~lp~l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 160 TSLEVLSVRNNQ-LTFLPELP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDP 231 (571)
T ss_dssp TTCCEEECCSSC-CSCCCCCC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCT
T ss_pred CCcCEEECCCCC-CCCcchhh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCC
Confidence 566666666663 55555533 56666666653 4555555 433 44 6666664 3555666544 2666
Q ss_pred CcEEEeecCCCCCccCC
Q 036657 443 PITIDFSFCVNLTEFPQ 459 (481)
Q Consensus 443 L~~L~l~~c~~L~~lp~ 459 (481)
|+.|++++|+--..+|.
T Consensus 232 L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRE 248 (571)
T ss_dssp TEEEECCSSSCCHHHHH
T ss_pred CCEEEeeCCcCCCcCHH
Confidence 66666666543333443
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=5.7e-14 Score=149.31 Aligned_cols=174 Identities=17% Similarity=0.193 Sum_probs=145.1
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
+..+.+|+.|++.+|.+ ..++ .+..++ +|+.|++++|.+..+|+...+.+|++|+|++|.+..+| .+.
T Consensus 39 ~~~L~~L~~L~l~~n~i---------~~l~-~l~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDI---------KSVQ-GIQYLP-NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCCC---------CCCT-TGGGCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TST
T ss_pred hhcCCCCCEEECcCCCC---------CCCh-HHccCC-CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhc
Confidence 45678899999998873 3444 578888 99999999999999887334999999999999999876 688
Q ss_pred CCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEe
Q 036657 369 KAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDF 448 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l 448 (481)
.+++|++|+|++|. +..+|.+..+++|+.|+|++| .+..+ ..++.+++|+.|+|++| .+..++....+++|+.|+|
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~L 182 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYL 182 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred cCCCCCEEEecCCC-CCCCccccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cCCCchhhccCCCCCEEEC
Confidence 99999999999994 888888999999999999996 46666 57899999999999975 6777766445999999999
Q ss_pred ecCCCCCccCCc--ccccceEeeeCcCCccCCC
Q 036657 449 SFCVNLTEFPQI--SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 449 ~~c~~L~~lp~~--~~~L~~L~L~~~~l~~lP~ 479 (481)
++|. +..+|.+ +.+|+.|+|++|.+...|.
T Consensus 183 s~N~-i~~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 183 SKNH-ISDLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CSSC-CCBCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred cCCC-CCCChHHccCCCCCEEEccCCcCcCCcc
Confidence 9975 8888763 5678999999999887764
No 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.52 E-value=4.8e-15 Score=161.14 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=92.8
Q ss_pred hCCCchhHHHHhhhhCCC--ChhHHHHHHHHHhcCCchhhHHHHHhccccCchhh-HHHhhhhccCCCCCCHH--HHHHH
Q 036657 120 ADGNPLALEVLGSSLYHK--SKQQWKDKLNNLKLISEPSIYKVLKISYDELNSEV-KEIFIDIACFFKGEDID--FMTRI 194 (481)
Q Consensus 120 c~GlPLAl~~lg~~L~~k--~~~~W~~~l~~l~~~~~~~i~~~L~lSYd~L~~~~-K~cFl~~a~Fp~~~~~~--~l~~~ 194 (481)
|+|+||||+++|+.|+++ +..+|+.. ....|..+|++||+.||+++ |+||+|||+||+++.++ .+..+
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~L 395 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHH
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 999999999999999987 78889763 45789999999999999999 99999999999997764 48888
Q ss_pred hcCC-C-cccccHHHHhhCcceeecC-CCceehhHHHHHHH
Q 036657 195 HDDP-M-SIHDGLNILVSKSLITISD-ENELQMHDLLQEMG 232 (481)
Q Consensus 195 ~~~~-~-~~~~~~~~L~~r~li~~~~-~~~~~mHdll~d~~ 232 (481)
|.+. . .++.++++|+++|||+... .++|+|||++++++
T Consensus 396 W~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 8765 2 5778999999999999863 56899999999866
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.7e-13 Score=127.79 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=109.3
Q ss_pred ceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC-
Q 036657 314 KLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD- 389 (481)
Q Consensus 314 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~- 389 (481)
...+|..+. .+|++|++++|.+..+++ .|. +.+|++|+|++|++..+|.. +..+++|++|+|++| .+..+|.
T Consensus 31 l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 106 (229)
T 3e6j_A 31 HASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSA 106 (229)
T ss_dssp CSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred cCccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChh
Confidence 445665433 489999999999888754 455 88999999999999988765 588999999999999 4888876
Q ss_pred -CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCC
Q 036657 390 -LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCV 452 (481)
Q Consensus 390 -~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~ 452 (481)
+..+++|++|++++ +.+..+|..++.+++|++|++++ +.+..+|.. + .+++|+.|++++++
T Consensus 107 ~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 VFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred HhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 78899999999998 56778999999999999999997 588888864 3 48999999999865
No 99
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=155.13 Aligned_cols=127 Identities=21% Similarity=0.359 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCC-----------chhhHHHHHhccccCchhhHHHh
Q 036657 108 DLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLIS-----------EPSIYKVLKISYDELNSEVKEIF 176 (481)
Q Consensus 108 ~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~-----------~~~i~~~L~lSYd~L~~~~K~cF 176 (481)
.+.+.+.+|+++|+|+||||+.+|+.|+.+. .+|+..++.+.... ...+..++..||+.||++.|.||
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l 383 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYY 383 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHH
Confidence 3456789999999999999999999998763 47999999887542 35789999999999999999999
Q ss_pred hhhccCCCCCCHH--HHHHHhcCC-CcccccHHHHhhCcceeecCCC---ceehhHHHHHHHHHH
Q 036657 177 IDIACFFKGEDID--FMTRIHDDP-MSIHDGLNILVSKSLITISDEN---ELQMHDLLQEMGQTI 235 (481)
Q Consensus 177 l~~a~Fp~~~~~~--~l~~~~~~~-~~~~~~~~~L~~r~li~~~~~~---~~~mHdll~d~~~~i 235 (481)
+++|+||+|+.++ .+..+|... ..+..++++|+++||++...++ .|+||++++++++..
T Consensus 384 ~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 384 TDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999999986654 588888776 6678889999999999976432 699999999999876
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=2.3e-13 Score=126.06 Aligned_cols=133 Identities=14% Similarity=0.281 Sum_probs=98.6
Q ss_pred ceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC-
Q 036657 314 KLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD- 389 (481)
Q Consensus 314 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~- 389 (481)
...+|..+ +.+|+.|++++|.++.+|.. |. +.+|++|+|++|.+..+ |..+..+++|++|+|++| .+..+|.
T Consensus 23 l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 98 (220)
T 2v9t_B 23 LTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKS 98 (220)
T ss_dssp CSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred cCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHh
Confidence 34455543 34788888888888887763 55 78888888888888876 667888888888888888 4777776
Q ss_pred -CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCC
Q 036657 390 -LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCV 452 (481)
Q Consensus 390 -~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~ 452 (481)
|..+++|++|+++++. +..+ |..++.+++|++|++++ +.++.+|.. + .+++|++|++++++
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 6788888888888854 4444 45678888888888886 567777764 3 38888888888754
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=7.4e-14 Score=127.98 Aligned_cols=156 Identities=24% Similarity=0.308 Sum_probs=122.6
Q ss_pred eecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--
Q 036657 315 LHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD-- 389 (481)
Q Consensus 315 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~-- 389 (481)
..+|..+ +.+|++|+++++.++.+|.. |. +.+|++|++++|+++.+|.. +..+++|++|++++|. +..+|.
T Consensus 20 ~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 95 (208)
T 2o6s_A 20 TSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV 95 (208)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhH
Confidence 4455433 34899999999999988876 44 89999999999999988775 5789999999999994 778876
Q ss_pred CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCCCCCccCCcccccce
Q 036657 390 LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCVNLTEFPQISGNIIE 466 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~~L~~lp~~~~~L~~ 466 (481)
++.+++|++|+++++ .+..+|.. ++.+++|++|++++ +.+..+|.. + .+++|+.|++++++-... ..+|+.
T Consensus 96 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~ 169 (208)
T 2o6s_A 96 FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRY 169 (208)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHH
T ss_pred hcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCeecC----CCCHHH
Confidence 789999999999985 56667655 78899999999997 578888775 3 489999999999753333 346778
Q ss_pred EeeeCcCCc-cCCCC
Q 036657 467 LKLWYTAIE-EVPSS 480 (481)
Q Consensus 467 L~L~~~~l~-~lP~s 480 (481)
|+++.|.++ .+|.+
T Consensus 170 L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 170 LSEWINKHSGVVRNS 184 (208)
T ss_dssp HHHHHHHCTTTBBCT
T ss_pred HHHHHHhCCceeecc
Confidence 888877774 66654
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2.7e-13 Score=126.38 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=124.5
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
..+.++.+++.+..+|..+ +.+|++|+|++|.+..+ |..+..+++|++|++++|. +..+|. +..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 4566888888999999866 48999999999999987 5668999999999999995 888886 79999999999999
Q ss_pred CCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCcc
Q 036657 404 CRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 404 c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~ 476 (481)
+ .+..+|.. ++.+++|++|++++ +.+..+|..+. +++|+.|+++++ .+..+|. .+.+|+.|+|++|.+..
T Consensus 98 N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 N-QLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred C-cCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 5 67777765 68999999999996 68999998775 999999999996 5888885 24578999999998753
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=1.9e-13 Score=151.42 Aligned_cols=173 Identities=14% Similarity=0.113 Sum_probs=136.3
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc-cCCCC-CCCCC-CCCceEEEcCCCCcccc-ccc
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY-SLKML-PFDFE-PENLIELNLPYSKVEQI-WKG 366 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~-~l~~l-P~~~~-l~~L~~L~L~~~~i~~l-p~~ 366 (481)
-.++|+.|++++|.+ ....|..+..++ +|++|++++| ....+ |..|. +.+|++|+|++|.+..+ |..
T Consensus 22 lp~~l~~LdLs~N~i--------~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI--------RTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCC--------CEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCcCEEECCCCcC--------CccChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 457999999999985 455678899999 9999999999 45566 55676 99999999999999977 788
Q ss_pred ccCCCCCcEEeccCCCCCcc-cCC---CCCCCCCCEEeccCCCCCccc--cccccCCCCCCEEeeeCCCCCccC-CCCCC
Q 036657 367 EKKAFKLKYIDISHSQQLVR-MLD---LSETPNLERTNLLNCRDLACV--RSSIENFNNLSMLCFKGCESLRSF-PRGIH 439 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~-lp~---~~~l~~L~~L~L~~c~~l~~l--p~~i~~L~~L~~L~l~~c~~l~~l-p~~~~ 439 (481)
+..+++|++|++++|. +.. +|. ++++++|++|++++|. +..+ +..++++++|++|+++++ .+..+ |..+.
T Consensus 93 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~ 169 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELE 169 (844)
T ss_dssp SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGH
T ss_pred ccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcc
Confidence 9999999999999995 554 454 8999999999999965 4443 357999999999999984 45443 33332
Q ss_pred -C--CCCcEEEeecCCCCCccCCccc---------ccceEeeeCcCCc
Q 036657 440 -F--VSPITIDFSFCVNLTEFPQISG---------NIIELKLWYTAIE 475 (481)
Q Consensus 440 -l--~~L~~L~l~~c~~L~~lp~~~~---------~L~~L~L~~~~l~ 475 (481)
+ ++|+.|++++|.-....|..++ +|+.|++++|.++
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 4 8899999998764444544222 2789999988764
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=1.2e-13 Score=137.23 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=144.8
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccC-CCCCCC-CC-CCCceE-EEcCCCCccccc-cc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSL-KMLPFD-FE-PENLIE-LNLPYSKVEQIW-KG 366 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l-~~lP~~-~~-l~~L~~-L~L~~~~i~~lp-~~ 366 (481)
++++.|++++|. ...+|. .|..++ +|++|++++|.+ +.+|.. |. +.+|.+ +.+.+|++..++ ..
T Consensus 30 ~~l~~L~Ls~N~---------i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTK---------LRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TTCSEEEEESCC---------CSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCEEEccCCc---------CCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 689999999998 456775 588899 999999999987 457765 54 777654 667789999985 45
Q ss_pred ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCC-CCCCEEeeeCCCCCccCCCCC-CCC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENF-NNLSMLCFKGCESLRSFPRGI-HFV 441 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L-~~L~~L~l~~c~~l~~lp~~~-~l~ 441 (481)
+..+++|++|++++|. +..+|+ +....++..|++.++..+..+|.. +..+ ..|+.|++++ +.++.+|... ...
T Consensus 100 f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGT 177 (350)
T ss_dssp BCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTE
T ss_pred hhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhcccc
Confidence 8999999999999994 888887 456667888999888888888864 4554 4689999996 7899998865 578
Q ss_pred CCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCCC
Q 036657 442 SPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 442 ~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~s 480 (481)
+|++|.+++++.++.+|.. +.+|+.|+|++|+|+.+|..
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 9999999998999999972 46789999999999999975
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=1.3e-13 Score=137.50 Aligned_cols=164 Identities=22% Similarity=0.270 Sum_probs=122.7
Q ss_pred cEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C--CCCCceEEEcCCCCcccccc-cccCCC
Q 036657 296 RLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F--EPENLIELNLPYSKVEQIWK-GEKKAF 371 (481)
Q Consensus 296 r~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~--~l~~L~~L~L~~~~i~~lp~-~~~~L~ 371 (481)
+++++.++. ...+|.. ++..+++|++++|.++.+|.. | .+.+|++|+|++|++..++. .+..++
T Consensus 21 ~~l~c~~~~---------l~~iP~~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 21 NILSCSKQQ---------LPNVPQS---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TEEECCSSC---------CSSCCSS---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CEEEeCCCC---------cCccCcc---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 466666665 3445654 344788889998888888776 3 57889999999998888865 488889
Q ss_pred CCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCCCCC-----CCCCC
Q 036657 372 KLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFPRGI-----HFVSP 443 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~~-----~l~~L 443 (481)
+|++|+|++|. +..+|. |..+++|++|+|+++. +..+ |..+..+++|++|++++ +.+..+|... .+++|
T Consensus 89 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 89 NLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTC
T ss_pred CCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcC
Confidence 99999999884 777776 7888999999998854 4444 56788889999999986 5788888653 38889
Q ss_pred cEEEeecCCCCCccCC-ccc---c--cceEeeeCcCCc
Q 036657 444 ITIDFSFCVNLTEFPQ-ISG---N--IIELKLWYTAIE 475 (481)
Q Consensus 444 ~~L~l~~c~~L~~lp~-~~~---~--L~~L~L~~~~l~ 475 (481)
+.|+|+++ .+..+|. .+. + ++.|+|++|.+.
T Consensus 166 ~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 166 MLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999885 4888774 222 2 367888887764
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=4.6e-15 Score=146.24 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=148.6
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc-cCCC--CC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY-SLKM--LP 342 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~-~l~~--lP 342 (481)
...++.+.+....... ...+..+.++++|+.|++++|.+ ....+..+..++ +|++|++++| .++. +|
T Consensus 92 ~~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l--------~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~ 161 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRL--------SDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQ 161 (336)
T ss_dssp CBCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBC--------CHHHHHHHTTCT-TCSEEECTTCBSCCHHHHH
T ss_pred CCCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCccc--------CHHHHHHHhcCC-CCCEEECCCCCCCCHHHHH
Confidence 3455666555332211 11345688999999999998874 345666777888 9999999999 5663 66
Q ss_pred CCCC-CCCceEEEcCCC-Cccc--ccccccCCC-CCcEEeccCCC-CC--cccCC-CCCCCCCCEEeccCCCCC-ccccc
Q 036657 343 FDFE-PENLIELNLPYS-KVEQ--IWKGEKKAF-KLKYIDISHSQ-QL--VRMLD-LSETPNLERTNLLNCRDL-ACVRS 412 (481)
Q Consensus 343 ~~~~-l~~L~~L~L~~~-~i~~--lp~~~~~L~-~L~~L~Ls~~~-~l--~~lp~-~~~l~~L~~L~L~~c~~l-~~lp~ 412 (481)
..+. +++|++|++++| .++. ++..+..++ +|++|++++|. .+ ..+|. +..+++|++|++++|..+ ...+.
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 6555 889999999999 8885 677788999 99999999994 23 44565 678999999999998744 45677
Q ss_pred cccCCCCCCEEeeeCCCCCccCC-CCC-CCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCC
Q 036657 413 SIENFNNLSMLCFKGCESLRSFP-RGI-HFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 413 ~i~~L~~L~~L~l~~c~~l~~lp-~~~-~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~ 479 (481)
.++.+++|++|++++|..+..-. ..+ ++++|+.|++++|-.-..+.....++..|++++|.++...+
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCccccC
Confidence 89999999999999986432211 123 49999999999982111222233468899999999976443
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=1.8e-13 Score=146.01 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=80.8
Q ss_pred CCcEEEEeCCCCCCCcccCcceecC-CccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccC
Q 036657 294 NLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKK 369 (481)
Q Consensus 294 ~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~ 369 (481)
+++.|++++|.+ ..+| ..|..++ +|++|++++|.++.+|+. |. +.+|++|+|++|+++.+|.+ +.+
T Consensus 53 ~~~~LdLs~N~i---------~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSFNPL---------RHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTTSCC---------CEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCCEEEeeCCCC---------CCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 566777776663 3333 4566666 677777777766666654 44 66777777777777666643 566
Q ss_pred CCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCc--cccccccCCCCCCEEeeeCCCCCccCC
Q 036657 370 AFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLA--CVRSSIENFNNLSMLCFKGCESLRSFP 435 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~--~lp~~i~~L~~L~~L~l~~c~~l~~lp 435 (481)
+++|++|++++| .+..+|. |+++++|++|+++++. +. .+|..++.+++|++|++++ +.++.++
T Consensus 123 L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 189 (635)
T 4g8a_A 123 LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS-NKIQSIY 189 (635)
T ss_dssp CTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS-SCCCEEC
T ss_pred CCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccC-ccccccc
Confidence 777777777766 3666664 6667777777776643 22 3455566667777777765 3455544
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.4e-13 Score=124.15 Aligned_cols=123 Identities=16% Similarity=0.233 Sum_probs=79.0
Q ss_pred cccceeeccccCCCCCC-C-CC-CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKMLPF-D-FE-PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~-~-~~-l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~ 400 (481)
.+++|++++|.++.+++ . |. +.+|++|+|++|.++.++. .+..+++|++|++++|. +..+|. ++.+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEE
Confidence 56677777777776643 2 33 6777777777777776654 46677777777777773 555554 66777777777
Q ss_pred ccCCCCCccc-cccccCCCCCCEEeeeCCCCCccC-CCCCC-CCCCcEEEeecCC
Q 036657 401 LLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSF-PRGIH-FVSPITIDFSFCV 452 (481)
Q Consensus 401 L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~l-p~~~~-l~~L~~L~l~~c~ 452 (481)
++++. +..+ |..+..+++|++|++++ +.++.+ |..+. +++|++|++++++
T Consensus 112 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSNR-ITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSC-CCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCc-CCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77743 4443 45566777777777775 456655 33443 7777777776644
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=1.1e-12 Score=121.48 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=120.6
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCccc-CC-CCCCCCCCEEeccCC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRM-LD-LSETPNLERTNLLNC 404 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~l-p~-~~~l~~L~~L~L~~c 404 (481)
-+.++.+++.++.+|..+. .+|++|++++|+++.++. .+..+++|++|++++|. +..+ |. |.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~- 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYG- 89 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCS-
T ss_pred CCEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCC-
Confidence 3567888999999998764 799999999999999876 58999999999999995 7777 44 99999999999999
Q ss_pred CCCcccccc-ccCCCCCCEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCc
Q 036657 405 RDLACVRSS-IENFNNLSMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 405 ~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~ 475 (481)
+.+..+|.. +..+++|++|++++ +.+..++. .+ ++++|+.|+++++. +..+|.. +.+|++|+|++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 567788876 68899999999997 57887754 44 49999999999965 8888762 457799999999874
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=2.1e-13 Score=120.55 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=59.5
Q ss_pred CCceEEEcCCCCcc--cccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEee
Q 036657 348 ENLIELNLPYSKVE--QIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCF 425 (481)
Q Consensus 348 ~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l 425 (481)
.+|++|++++|.+. .+|..+..+++|++|++++|. +..++.++.+++|++|++++|.....+|..++++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34444444444444 444444445555555555542 444433445555555555543322224444444555555555
Q ss_pred eCCCCCccCC--CCC-CCCCCcEEEeecCCCCCccCC-------cccccceEeeeCcCCccCCC
Q 036657 426 KGCESLRSFP--RGI-HFVSPITIDFSFCVNLTEFPQ-------ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 426 ~~c~~l~~lp--~~~-~l~~L~~L~l~~c~~L~~lp~-------~~~~L~~L~L~~~~l~~lP~ 479 (481)
++| .++.+| ..+ .+++|+.|++++|. +..+|. .+++|++|++++|.+.++|.
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 542 444443 222 25555555555543 444443 12344555555555555554
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=121.17 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=118.3
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc--cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK--GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
-+.++++++.++.+|..+ +..+++|+|++|+++.++. .+..+++|++|++++|. +..+|. |+++++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCC
Confidence 457889999999999866 4677999999999998843 37899999999999995 888875 99999999999999
Q ss_pred CCCCccccc-cccCCCCCCEEeeeCCCCCccCC-CCC-CCCCCcEEEeecCCCCCcc-CCc---ccccceEeeeCcCCc
Q 036657 404 CRDLACVRS-SIENFNNLSMLCFKGCESLRSFP-RGI-HFVSPITIDFSFCVNLTEF-PQI---SGNIIELKLWYTAIE 475 (481)
Q Consensus 404 c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp-~~~-~l~~L~~L~l~~c~~L~~l-p~~---~~~L~~L~L~~~~l~ 475 (481)
+ .+..+|. .++.+++|++|++++ +.+..++ ..+ ++++|+.|+++++. +..+ |.. +.+|++|+|++|.+.
T Consensus 91 N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 N-RLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp S-CCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred C-ccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5 4566655 489999999999997 5777774 445 49999999999964 7777 544 456789999999875
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=1.2e-12 Score=130.54 Aligned_cols=147 Identities=16% Similarity=0.236 Sum_probs=124.9
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc-cc-CCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG-EK-KAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~-~~-~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
-+.++++++.++.+|..+ +..+++|+|++|+++.++.. +. .+++|++|+|++|. +..+|. |..+++|++|+|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 467899999999999865 46799999999999999876 44 89999999999994 888875 99999999999999
Q ss_pred CCCCccccc-cccCCCCCCEEeeeCCCCCccCC-CCC-CCCCCcEEEeecCCCCCccCCc-------ccccceEeeeCcC
Q 036657 404 CRDLACVRS-SIENFNNLSMLCFKGCESLRSFP-RGI-HFVSPITIDFSFCVNLTEFPQI-------SGNIIELKLWYTA 473 (481)
Q Consensus 404 c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp-~~~-~l~~L~~L~l~~c~~L~~lp~~-------~~~L~~L~L~~~~ 473 (481)
+ .+..+|. .+..+++|+.|++++ +.+..++ ..+ ++++|+.|+|+++ .+..+|.. +.+|+.|+|++|.
T Consensus 98 N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 98 N-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred C-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 5 5777765 488999999999997 5677775 445 4999999999996 48888863 4678999999999
Q ss_pred CccCCC
Q 036657 474 IEEVPS 479 (481)
Q Consensus 474 l~~lP~ 479 (481)
|+.+|.
T Consensus 175 l~~l~~ 180 (361)
T 2xot_A 175 LKKLPL 180 (361)
T ss_dssp CCCCCH
T ss_pred CCccCH
Confidence 999883
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=2e-14 Score=141.67 Aligned_cols=176 Identities=13% Similarity=0.116 Sum_probs=133.4
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CCCceEEEcCCC-Ccc--cc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYS-KVE--QI 363 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~-~i~--~l 363 (481)
+.++++|+.|++++|.+ ....++..+..++ +|++|++++|.+. ..|..+. +++|++|++++| .++ .+
T Consensus 89 ~~~~~~L~~L~L~~~~l-------~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVI-------EVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp CCCCBCCCEEECTTCEE-------CHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred hccCCCCCEEEccCCCc-------CHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHH
Confidence 45789999999998763 0122666778888 9999999999876 3454444 889999999999 677 36
Q ss_pred cccccCCCCCcEEeccCCCCCcc--cCC-CCCCC-CCCEEeccCCC-CC--ccccccccCCCCCCEEeeeCCCCCc-cCC
Q 036657 364 WKGEKKAFKLKYIDISHSQQLVR--MLD-LSETP-NLERTNLLNCR-DL--ACVRSSIENFNNLSMLCFKGCESLR-SFP 435 (481)
Q Consensus 364 p~~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~-~L~~L~L~~c~-~l--~~lp~~i~~L~~L~~L~l~~c~~l~-~lp 435 (481)
+..+..+++|++|++++|..+.. +|. +..++ +|++|++++|. .+ ..+|..++++++|++|++++|..++ ..+
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 77788899999999999944664 455 77888 99999999985 33 4577778889999999999886554 334
Q ss_pred CCC-CCCCCcEEEeecCCCCCcc--C--CcccccceEeeeCc
Q 036657 436 RGI-HFVSPITIDFSFCVNLTEF--P--QISGNIIELKLWYT 472 (481)
Q Consensus 436 ~~~-~l~~L~~L~l~~c~~L~~l--p--~~~~~L~~L~L~~~ 472 (481)
..+ ++++|++|++++|..+..- . ...++|++|++++|
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 444 4899999999998744321 1 12567899999987
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=1.3e-15 Score=160.83 Aligned_cols=177 Identities=14% Similarity=0.091 Sum_probs=107.7
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc--------------CCCCCCCCC-CCCceEEE
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS--------------LKMLPFDFE-PENLIELN 354 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~--------------l~~lP~~~~-l~~L~~L~ 354 (481)
...++|+.|++++|. ...+|..++.++ +|+.|+++++. ....|..+. +.+|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~---------L~~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCELSVEK---------STVLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCCCHHH---------HHHHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccCccceeccCChhh---------HHhhHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCc
Confidence 446677777777666 456777777777 77777765542 122233333 55566665
Q ss_pred -cCCCCcccccc------cccC--CCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEee
Q 036657 355 -LPYSKVEQIWK------GEKK--AFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCF 425 (481)
Q Consensus 355 -L~~~~i~~lp~------~~~~--L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l 425 (481)
++.+.+..++. .+.. ...|+.|++++| .+..+|.++.+++|+.|++++| .+..+|..++++++|+.|++
T Consensus 416 ~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEEC
T ss_pred chhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCcc-cccccchhhhcCCCCCEEEC
Confidence 44443332221 0111 124777777777 4667777777777777777773 45577777777777777777
Q ss_pred eCCCCCccCCCCCCCCCCcEEEeecCCCCCcc--CCc---ccccceEeeeCcCCccCCCC
Q 036657 426 KGCESLRSFPRGIHFVSPITIDFSFCVNLTEF--PQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 426 ~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~l--p~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
++ +.++.+|...++++|+.|++++|. +..+ |.. +.+|+.|+|++|.++.+|+.
T Consensus 494 s~-N~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 494 SD-NALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CS-SCCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CC-CCCCCCcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 75 466667632247777777777753 6666 553 33557777777777776653
No 115
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.42 E-value=8.1e-15 Score=126.06 Aligned_cols=82 Identities=15% Similarity=0.346 Sum_probs=61.6
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecC----CcccccccCcHHHHHHHHHhcCc-
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVD----PSDVRKQRGTFEKAFVHHENNFP- 76 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~----p~~v~~q~g~~~~~~~~~~~~~~- 76 (481)
++.+||++||..|+|||+||++|.||+.|+..++.|.......|+||||+|+ |..++....... ..++..|.
T Consensus 57 ~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~ 133 (146)
T 3ub2_A 57 ELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQ 133 (146)
T ss_dssp EECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHH
T ss_pred HHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHH
Confidence 5678999999999999999999999999999999986333336779999998 455565543221 12223333
Q ss_pred --hhhhhHHHHH
Q 036657 77 --DKVQKWRDVL 86 (481)
Q Consensus 77 --~~v~~w~~al 86 (481)
+.|.+|++||
T Consensus 134 l~~~v~~~~~~~ 145 (146)
T 3ub2_A 134 VKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 6788998875
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=5e-13 Score=118.05 Aligned_cols=132 Identities=16% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccc-ccccccC
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQ-IWKGEKK 369 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~-lp~~~~~ 369 (481)
.++|+.|++++|.+ ....+|..+..++ +|++|++++|.++.+ ..+. +.+|++|++++|.+.. +|..+..
T Consensus 23 ~~~L~~L~l~~n~l-------~~~~i~~~~~~l~-~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKS-------NDGKIEGLTAEFV-NLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBC-------BTTBCSSCCGGGG-GCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCC-------ChhhHHHHHHhCC-CCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 35667777776653 0125566666666 666666666666665 3333 6666666666666665 4444555
Q ss_pred CCCCcEEeccCCCCCcccC--C-CCCCCCCCEEeccCCCCCccccc----cccCCCCCCEEeeeCCCCCccCC
Q 036657 370 AFKLKYIDISHSQQLVRML--D-LSETPNLERTNLLNCRDLACVRS----SIENFNNLSMLCFKGCESLRSFP 435 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp--~-~~~l~~L~~L~L~~c~~l~~lp~----~i~~L~~L~~L~l~~c~~l~~lp 435 (481)
+++|++|++++|. +..+| . ++.+++|++|++++| .+..+|. .+..+++|++|++++| ....+|
T Consensus 94 l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 94 LPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp CTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred CCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence 6666666666663 55544 2 555666666666653 3444443 4555555666555543 344444
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=1.2e-13 Score=150.09 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=60.7
Q ss_pred CCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCC
Q 036657 318 DQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPN 395 (481)
Q Consensus 318 ~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~ 395 (481)
++.+..++ .|+.|++++|.+..+|..+. +.+|++|+|++|.++.+|..+..|++|++|+|++|. +..+|. ++.+++
T Consensus 217 ~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQ-LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCC-CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred hhhhccCC-CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence 34445555 56666666666666655433 566666666666666666666666666666666663 555555 556666
Q ss_pred CCEEeccCCCCCccccccccCCCCCCEEeeeC
Q 036657 396 LERTNLLNCRDLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 396 L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
|++|+|++| .+..+|..|++|++|++|+|++
T Consensus 295 L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 295 LKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSEEECCSS-CCCCCCSSTTSCTTCCCEECTT
T ss_pred CCEEECCCC-CCCccChhhhcCCCccEEeCCC
Confidence 666666653 4455665566666666666665
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=4.6e-14 Score=142.07 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=136.7
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC-----CCCCC-C---------CCce
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML-----PFDFE-P---------ENLI 351 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-----P~~~~-l---------~~L~ 351 (481)
..|..+++|+.|++++|.+. ......+|..+..++ +|++|++++|.+... +..+. + ++|+
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFG----PTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCC----TTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHhhCCcccEEECCCCcCC----HHHHHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 34578899999999988851 001114666777788 999999999987532 22221 3 7999
Q ss_pred EEEcCCCCcc--ccc---ccccCCCCCcEEeccCCCCCc------ccC-CCCCCCCCCEEeccCCCCC----cccccccc
Q 036657 352 ELNLPYSKVE--QIW---KGEKKAFKLKYIDISHSQQLV------RML-DLSETPNLERTNLLNCRDL----ACVRSSIE 415 (481)
Q Consensus 352 ~L~L~~~~i~--~lp---~~~~~L~~L~~L~Ls~~~~l~------~lp-~~~~l~~L~~L~L~~c~~l----~~lp~~i~ 415 (481)
+|++++|++. .+| ..+..+++|++|++++|. +. -+| .+..+++|++|++++|..- ..+|..+.
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 9999999886 444 467788999999999994 66 355 5888999999999997532 66788889
Q ss_pred CCCCCCEEeeeCCCCCcc-----CCCCC---CCCCCcEEEeecCCCCCc-----cCCc----ccccceEeeeCcCCccCC
Q 036657 416 NFNNLSMLCFKGCESLRS-----FPRGI---HFVSPITIDFSFCVNLTE-----FPQI----SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 416 ~L~~L~~L~l~~c~~l~~-----lp~~~---~l~~L~~L~l~~c~~L~~-----lp~~----~~~L~~L~L~~~~l~~lP 478 (481)
.+++|++|++++| .+.. +|..+ .+++|++|++++|. +.. +|.. +++|++|++++|.++..+
T Consensus 242 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 242 SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9999999999976 4544 24433 27899999999976 666 7764 378899999999987543
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.37 E-value=7.3e-12 Score=133.57 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=125.0
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC--CC-CCCceEEEcCCCCccc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD--FE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~--~~-l~~L~~L~L~~~~i~~ 362 (481)
+..+..+.+|+.|++..+. ....+..+..++ .|+.+++.++.....+.. |. +.+|+.+++++|.+..
T Consensus 390 ~~~~~~~~~L~~L~~~~~~---------~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNG---------VITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp CHHHHSCSCCCEEECCSCS---------EEEECSCCTTCT-TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccchhhhhhhhhhhccccc---------cccccccccccc-cccchhhhhcccccccccccccccccccccccccccccc
Confidence 3444556666666666554 445566677777 888888877765544332 33 7888888888888876
Q ss_pred cc-ccccCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCCCC-
Q 036657 363 IW-KGEKKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFPRG- 437 (481)
Q Consensus 363 lp-~~~~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~- 437 (481)
++ ..+..++.|+.|++++|..... .|+ ++.+++|++|+|++|. +..+ |..++++++|+.|++++ +++..+|..
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~ 537 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFP 537 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT-SCCCBCCCGG
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCC-CcCCCCChhH
Confidence 54 4467788899999988864444 455 8888899999999864 5555 56688889999999986 578887764
Q ss_pred C-CCCCCcEEEeecCCCCCccCC-c----ccccceEeeeCcCCc
Q 036657 438 I-HFVSPITIDFSFCVNLTEFPQ-I----SGNIIELKLWYTAIE 475 (481)
Q Consensus 438 ~-~l~~L~~L~l~~c~~L~~lp~-~----~~~L~~L~L~~~~l~ 475 (481)
+ ++++|+.|+++++. +..+|. . ..+|++|+|++|.+.
T Consensus 538 ~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp GTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred HhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 3 48889999998865 666543 2 256788888877664
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1e-12 Score=113.65 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=47.2
Q ss_pred cccceeeccccCC--CCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEec
Q 036657 327 ELRYLHWHEYSLK--MLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNL 401 (481)
Q Consensus 327 ~Lr~L~l~~~~l~--~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L 401 (481)
+|+.|++++|.+. .+|..+. +.+|++|++++|.++.+ ..+..+++|++|++++|. +.. +|. ++.+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEEC
Confidence 4444444444444 4444433 44444444444444444 334444455555554442 333 333 333444555555
Q ss_pred cCCCCCcccc--ccccCCCCCCEEeeeCCCCCccCCC
Q 036657 402 LNCRDLACVR--SSIENFNNLSMLCFKGCESLRSFPR 436 (481)
Q Consensus 402 ~~c~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~lp~ 436 (481)
++| .+..+| ..++.+++|++|++++| .+..+|.
T Consensus 96 s~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 96 SGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp TTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred CCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 443 233332 34444555555555542 3444443
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=8.6e-12 Score=112.95 Aligned_cols=120 Identities=19% Similarity=0.326 Sum_probs=86.5
Q ss_pred cceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCC
Q 036657 329 RYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRD 406 (481)
Q Consensus 329 r~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~ 406 (481)
++++++++.++.+|..+ +.+|++|++++|.++.+|..+..+++|++|++++|. +..++. |.++++|++|+++++ .
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-c
Confidence 45677777777777654 367788888888887777777778888888888774 666664 777888888888874 4
Q ss_pred Cccccc-cccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCC
Q 036657 407 LACVRS-SIENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCV 452 (481)
Q Consensus 407 l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~ 452 (481)
+..++. .++.+++|++|++++ +.+..+|.. + .+++|+.|++++++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 555554 477778888888876 567777764 3 37788888887643
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=9.2e-13 Score=113.89 Aligned_cols=124 Identities=18% Similarity=0.240 Sum_probs=105.3
Q ss_pred CCCCcEEEEeCCCCCCCcccCcc-eecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccc-cccccc
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSK-LHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQ-IWKGEK 368 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~-~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~-lp~~~~ 368 (481)
.++|+.|++++|.+ . ..+|..+..++ +|++|++++|.++.+ ..+. +.+|++|++++|.+.. +|..+.
T Consensus 16 ~~~l~~L~l~~n~l--------~~~~~~~~~~~l~-~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRS--------NEGKLEGLTDEFE-ELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBC--------BTTBCCSCCTTCT-TCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CccCeEEEccCCcC--------ChhHHHHHHhhcC-CCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 47899999999874 2 37888888888 999999999999988 4454 9999999999999998 787788
Q ss_pred CCCCCcEEeccCCCCCcccC--C-CCCCCCCCEEeccCCCCCccccc----cccCCCCCCEEeeeC
Q 036657 369 KAFKLKYIDISHSQQLVRML--D-LSETPNLERTNLLNCRDLACVRS----SIENFNNLSMLCFKG 427 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp--~-~~~l~~L~~L~L~~c~~l~~lp~----~i~~L~~L~~L~l~~ 427 (481)
.+++|++|++++|. +..+| . ++.+++|++|++++| .+..+|. .++.+++|+.|++++
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 89999999999995 77764 4 899999999999996 5677765 688999999998863
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.4e-12 Score=116.23 Aligned_cols=122 Identities=15% Similarity=0.228 Sum_probs=66.0
Q ss_pred cccceeeccccCCCCCCCCCC-CCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEP-ENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l-~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
+|+.|++++|.++.+|....+ .+|++|++++|.++.+ ..+..+++|++|++++|. +..+|. ++.+++|++|++++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCS
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCC
Confidence 455555555555544432222 2556666666655555 445556666666666653 555553 35566666666665
Q ss_pred CCCCccccc--cccCCCCCCEEeeeCCCCCccCCCC----C-CCCCCcEEEeecCC
Q 036657 404 CRDLACVRS--SIENFNNLSMLCFKGCESLRSFPRG----I-HFVSPITIDFSFCV 452 (481)
Q Consensus 404 c~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~----~-~l~~L~~L~l~~c~ 452 (481)
| .+..+|. .++.+++|++|++++ +.+..+|.. + .+++|+.|+++++.
T Consensus 98 N-~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 N-SLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp C-CCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred C-cCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 3 3455554 555666666666665 345555553 2 26666666666543
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=3.9e-13 Score=146.22 Aligned_cols=152 Identities=12% Similarity=0.035 Sum_probs=111.4
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~ 362 (481)
+.+..|..+.+|+.|++++|. ...+|..+..++ +|++|++++|.++.+|..|. +.+|++|+|++|.++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~---------l~~l~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ---------IFNISANIFKYD-FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp -------CCCCCCEEECTTSC---------CSCCCGGGGGCC-SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred cChhhhccCCCCcEEECCCCC---------CCCCChhhcCCC-CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 557789999999999999998 457888888998 99999999999999999887 9999999999999999
Q ss_pred ccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCC-CCEEeeeCCCCCccCCCCCCC
Q 036657 363 IWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNN-LSMLCFKGCESLRSFPRGIHF 440 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~-L~~L~l~~c~~l~~lp~~~~l 440 (481)
+|..+..|++|++|+|++| .+..+|. |+.+++|++|+|++|.....+|..++.+.. +..|+++++.--..+ +
T Consensus 285 lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-----p 358 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-----P 358 (727)
T ss_dssp CCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-----C
T ss_pred cChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC-----c
Confidence 9999999999999999999 5899998 999999999999997654456655544321 223556653222222 3
Q ss_pred CCCcEEEeecC
Q 036657 441 VSPITIDFSFC 451 (481)
Q Consensus 441 ~~L~~L~l~~c 451 (481)
..|+.|+++.+
T Consensus 359 ~~l~~l~l~~n 369 (727)
T 4b8c_D 359 HERRFIEINTD 369 (727)
T ss_dssp CC---------
T ss_pred cccceeEeecc
Confidence 35666666654
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=2.1e-12 Score=115.06 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=108.0
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~ 365 (481)
..|..+.+|+.|++++|.+ ..+|. +..+..+|++|++++|.++.++ .+. +.+|++|++++|.++.+|.
T Consensus 13 ~~~~~~~~L~~L~l~~n~l---------~~i~~-~~~~~~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI---------PVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp CEEECTTSCEEEECTTSCC---------CSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECS
T ss_pred HhcCCcCCceEEEeeCCCC---------chhHH-hhhcCCCCCEEECCCCCCCccc-ccccCCCCCEEECCCCcccccCc
Confidence 3466788999999999984 34554 4444449999999999999884 444 9999999999999999987
Q ss_pred cc-cCCCCCcEEeccCCCCCcccCC---CCCCCCCCEEeccCCCCCcccccc----ccCCCCCCEEeeeCCC
Q 036657 366 GE-KKAFKLKYIDISHSQQLVRMLD---LSETPNLERTNLLNCRDLACVRSS----IENFNNLSMLCFKGCE 429 (481)
Q Consensus 366 ~~-~~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~c~~l~~lp~~----i~~L~~L~~L~l~~c~ 429 (481)
++ ..+++|++|++++|. +..+|. ++.+++|++|++++| .+..+|.. ++.+++|+.|+++++.
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 75 899999999999994 788885 788999999999995 56778875 8999999999999753
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=1.2e-13 Score=139.00 Aligned_cols=200 Identities=16% Similarity=0.176 Sum_probs=144.0
Q ss_pred cceeeeeecCCccccccc--ChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCcc-------ccccccccceeecccc
Q 036657 267 DKVEGIFLDLSKINDIHL--NPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGL-------EYLPEELRYLHWHEYS 337 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~--~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l-------~~l~~~Lr~L~l~~~~ 337 (481)
..++.+.+.......... -...|.++++|+.|++++|... .....+|.++ ..++ +|++|++++|.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~-----~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~ 105 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-----RVKDEIPEALRLLLQALLKCP-KLHTVRLSDNA 105 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-----SCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC-----ccccchhHHHHHHHHHHhhCC-cccEEECCCCc
Confidence 346666655443321111 1234778999999999987521 0012334333 6777 99999999999
Q ss_pred CCC-----CCCCCC-CCCceEEEcCCCCccc-----ccccccCC---------CCCcEEeccCCCCCc--ccC---C-CC
Q 036657 338 LKM-----LPFDFE-PENLIELNLPYSKVEQ-----IWKGEKKA---------FKLKYIDISHSQQLV--RML---D-LS 391 (481)
Q Consensus 338 l~~-----lP~~~~-l~~L~~L~L~~~~i~~-----lp~~~~~L---------~~L~~L~Ls~~~~l~--~lp---~-~~ 391 (481)
+.. +|..+. +++|++|+|++|.+.. ++..+..+ ++|++|++++|. +. .+| . +.
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQ 184 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHH
Confidence 876 666665 8999999999999863 34445455 899999999995 53 455 2 66
Q ss_pred CCCCCCEEeccCCCCCc------cccccccCCCCCCEEeeeCCCCC-----ccCCCCCC-CCCCcEEEeecCCCCCc---
Q 036657 392 ETPNLERTNLLNCRDLA------CVRSSIENFNNLSMLCFKGCESL-----RSFPRGIH-FVSPITIDFSFCVNLTE--- 456 (481)
Q Consensus 392 ~l~~L~~L~L~~c~~l~------~lp~~i~~L~~L~~L~l~~c~~l-----~~lp~~~~-l~~L~~L~l~~c~~L~~--- 456 (481)
.+++|++|++++|. +. -.|..+..+++|++|++++| .+ ..+|..+. +++|++|++++|. +..
T Consensus 185 ~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~ 261 (386)
T 2ca6_A 185 SHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA 261 (386)
T ss_dssp HCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred hCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhH
Confidence 78899999999974 43 23447889999999999975 46 55666554 8999999999986 654
Q ss_pred --cCCc-----ccccceEeeeCcCCcc
Q 036657 457 --FPQI-----SGNIIELKLWYTAIEE 476 (481)
Q Consensus 457 --lp~~-----~~~L~~L~L~~~~l~~ 476 (481)
+|.. ..+|++|+|++|.|+.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 3443 5778999999999976
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=6.1e-12 Score=132.81 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=119.8
Q ss_pred hHhhccCCCCcEEEEeCCCCCCC-----cccCcceecCCcccccccccccee-eccccCCCCCCC---------CCCCCc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDI-----PIMSSKLHLDQGLEYLPEELRYLH-WHEYSLKMLPFD---------FEPENL 350 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~-----~~~~~~~~l~~~l~~l~~~Lr~L~-l~~~~l~~lP~~---------~~l~~L 350 (481)
+..+.++++|+.|++++|....+ .........|..++.++ +|+.|+ ++.+.+..++.. +....|
T Consensus 365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L 443 (567)
T 1dce_A 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-hcccCcchhhcccchhhhhhhhcccccccCccCc
Confidence 66778888888888754420000 00001234455666666 777776 444432222210 012358
Q ss_pred eEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCC
Q 036657 351 IELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCE 429 (481)
Q Consensus 351 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~ 429 (481)
++|+|++|.++.+|. +..+++|++|++++|. +..+|. ++.+++|++|+|++ +.+..+| .++.+++|+.|++++ +
T Consensus 444 ~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~-N 518 (567)
T 1dce_A 444 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCN-N 518 (567)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCS-S
T ss_pred eEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCC-C
Confidence 888888888888886 8888888888888884 778887 88888888888888 4566777 788888888888886 5
Q ss_pred CCccC--CCCCC-CCCCcEEEeecCCCCCccCCc-------ccccceEee
Q 036657 430 SLRSF--PRGIH-FVSPITIDFSFCVNLTEFPQI-------SGNIIELKL 469 (481)
Q Consensus 430 ~l~~l--p~~~~-l~~L~~L~l~~c~~L~~lp~~-------~~~L~~L~L 469 (481)
.+..+ |..+. +++|+.|++++|+ +..+|.. +++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 77777 66664 8888888888864 7776653 345666653
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=2.3e-11 Score=109.99 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=52.5
Q ss_pred cccceeeccccCCCCCCC--CC-CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKMLPFD--FE-PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~--~~-l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~ 400 (481)
++++|++++|.+..+|.. |. +.+|++|+|++|.++.+ |..+..+++|++|++++|. +..+|. ++.+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEE
Confidence 555555555555555543 33 55555555555555544 3445555555555555553 444443 55555555555
Q ss_pred ccCCCCCccccccccCCCCCCEEeeeC
Q 036657 401 LLNCRDLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 401 L~~c~~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
++++......|..++.+++|++|++++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 555332222344455555555555554
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=3.9e-11 Score=108.42 Aligned_cols=121 Identities=13% Similarity=0.167 Sum_probs=102.2
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc--ccCCCCCcEEeccCCCCCccc-CC-CCCCCCCCEEeccC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG--EKKAFKLKYIDISHSQQLVRM-LD-LSETPNLERTNLLN 403 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~Ls~~~~l~~l-p~-~~~l~~L~~L~L~~ 403 (481)
-++++++++.++.+|..+. .+|++|++++|++..++.. +..+++|++|++++|. +..+ |. ++.+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCC
Confidence 4788999999999998764 4999999999999998864 8999999999999995 7777 54 99999999999999
Q ss_pred CCCCccccc-cccCCCCCCEEeeeCCCCCccC-CCCCC-CCCCcEEEeecCC
Q 036657 404 CRDLACVRS-SIENFNNLSMLCFKGCESLRSF-PRGIH-FVSPITIDFSFCV 452 (481)
Q Consensus 404 c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~l-p~~~~-l~~L~~L~l~~c~ 452 (481)
+ .+..++. .++.+++|++|++++ +.+..+ |..+. +++|++|++++++
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 N-KIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp C-CCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred C-cCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 5 5666655 488999999999997 567766 55554 9999999999865
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=2.8e-11 Score=109.60 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=86.3
Q ss_pred cEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc-cccCCCCC
Q 036657 296 RLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK-GEKKAFKL 373 (481)
Q Consensus 296 r~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~-~~~~L~~L 373 (481)
++++++++. ...+|..+ +.+|++|++++|.++.+|..|. +.+|++|+|++|.++.++. .+..+++|
T Consensus 13 ~~l~~~~~~---------l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKG---------LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSC---------CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCC---------CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 456666555 34555543 3478888888888888886665 7888888888888887764 47788888
Q ss_pred cEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeC
Q 036657 374 KYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKG 427 (481)
Q Consensus 374 ~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~ 427 (481)
++|+|++|. +..+|. |+.+++|++|++++ +.+..+|.. +..+++|+.|++++
T Consensus 81 ~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 81 LTLILSYNR-LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CEEECCSSC-CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCc-cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC
Confidence 888888884 777764 78888888888887 456666654 77788888888876
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=1.3e-10 Score=103.36 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=92.0
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
..+.++++++.++.+|..+ +.+|++|++++|++..+|.. +..+++|++|++++| .+..+|. ++.+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 3456777777777777554 46888888888888877665 577888888888888 4777775 67888888888888
Q ss_pred CCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEEeecCC
Q 036657 404 CRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGI--HFVSPITIDFSFCV 452 (481)
Q Consensus 404 c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~ 452 (481)
+ .+..+|.. ++.+++|++|++++ +.++.+|... .+++|++|++++++
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCC
Confidence 4 56666654 67788888888886 4777887754 38888888888865
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.22 E-value=1.7e-12 Score=129.43 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=133.4
Q ss_pred ceeeeeecCCcccccccCh----HhhccCC-CCcEEEEeCCCCCCCcccCcceecCCccccc----cccccceeeccccC
Q 036657 268 KVEGIFLDLSKINDIHLNP----QAFANMS-NLRLLKFYMPKHNDIPIMSSKLHLDQGLEYL----PEELRYLHWHEYSL 338 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~----~~f~~l~-~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l----~~~Lr~L~l~~~~l 338 (481)
.++.+.+..... ..... ..|.+++ +|+.|++++|.+ ....+..+..+ +.+|++|++++|.+
T Consensus 23 ~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--------~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 23 GVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSL--------GFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp TCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCG--------GGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCC--------CHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 466666554443 23334 7788888 899999999884 22223333333 23899999999998
Q ss_pred CCCCCC-----CC-C-CCceEEEcCCCCccccccc-----ccCC-CCCcEEeccCCCCCc-----ccCC-CCCCC-CCCE
Q 036657 339 KMLPFD-----FE-P-ENLIELNLPYSKVEQIWKG-----EKKA-FKLKYIDISHSQQLV-----RMLD-LSETP-NLER 398 (481)
Q Consensus 339 ~~lP~~-----~~-l-~~L~~L~L~~~~i~~lp~~-----~~~L-~~L~~L~Ls~~~~l~-----~lp~-~~~l~-~L~~ 398 (481)
...+.. +. + .+|++|++++|.+...+.. +..+ .+|++|++++|. +. .++. +..++ +|++
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccE
Confidence 865543 22 3 7999999999998876542 4443 699999999994 65 3333 44555 9999
Q ss_pred EeccCCCCCccccc----cccCC-CCCCEEeeeCCCCCcc-----CCCCCC--CCCCcEEEeecCCCCCccCC-------
Q 036657 399 TNLLNCRDLACVRS----SIENF-NNLSMLCFKGCESLRS-----FPRGIH--FVSPITIDFSFCVNLTEFPQ------- 459 (481)
Q Consensus 399 L~L~~c~~l~~lp~----~i~~L-~~L~~L~l~~c~~l~~-----lp~~~~--l~~L~~L~l~~c~~L~~lp~------- 459 (481)
|++++|.--...+. .+..+ ++|++|++++| .+.. ++..+. .++|++|++++|. +...+.
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~ 249 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLK 249 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTT
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHH
Confidence 99999753333332 34455 59999999975 5666 444442 4689999999975 665432
Q ss_pred -cccccceEeeeCcCCccC
Q 036657 460 -ISGNIIELKLWYTAIEEV 477 (481)
Q Consensus 460 -~~~~L~~L~L~~~~l~~l 477 (481)
...+|+.|+|++|.+..+
T Consensus 250 ~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTC
T ss_pred hcCCCccEEEeccCCcccc
Confidence 346789999999885443
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=3.4e-12 Score=127.29 Aligned_cols=201 Identities=13% Similarity=0.083 Sum_probs=138.3
Q ss_pred ceeeeeecCCcccccccChHhhccC-----CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANM-----SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLP 342 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l-----~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP 342 (481)
.++.+.+..+.. .......|..+ ++|+.|++++|.+. +.....+...+..++.+|++|++++|.+...+
T Consensus 52 ~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 52 SVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLS----YKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp TCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGG----GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred ceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCC----hHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 567776665443 23345555554 99999999999841 00011111234455349999999999998776
Q ss_pred CC-C----C--CCCceEEEcCCCCcc-----cccccccCCC-CCcEEeccCCCCCcccCC------CCCC-CCCCEEecc
Q 036657 343 FD-F----E--PENLIELNLPYSKVE-----QIWKGEKKAF-KLKYIDISHSQQLVRMLD------LSET-PNLERTNLL 402 (481)
Q Consensus 343 ~~-~----~--l~~L~~L~L~~~~i~-----~lp~~~~~L~-~L~~L~Ls~~~~l~~lp~------~~~l-~~L~~L~L~ 402 (481)
.. + . +.+|++|+|++|.+. .++..+..++ +|++|++++|. +...+. +... ++|++|+++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECC
Confidence 53 1 1 369999999999988 5566667776 99999999995 665542 3445 599999999
Q ss_pred CCCCCcc-----ccccccCC-CCCCEEeeeCCCCCccCCC-----CC-CCCCCcEEEeecCC--C-----CCccCCc---
Q 036657 403 NCRDLAC-----VRSSIENF-NNLSMLCFKGCESLRSFPR-----GI-HFVSPITIDFSFCV--N-----LTEFPQI--- 460 (481)
Q Consensus 403 ~c~~l~~-----lp~~i~~L-~~L~~L~l~~c~~l~~lp~-----~~-~l~~L~~L~l~~c~--~-----L~~lp~~--- 460 (481)
+|. +.. ++..+..+ ++|++|++++| .+...+. .+ .+++|++|++++|. . +..++..
T Consensus 205 ~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 205 ANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp TSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred CCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 964 554 67777764 59999999974 6666543 22 38999999999975 1 2223332
Q ss_pred ccccceEeeeCcCCccC
Q 036657 461 SGNIIELKLWYTAIEEV 477 (481)
Q Consensus 461 ~~~L~~L~L~~~~l~~l 477 (481)
..+|+.|++++|.+...
T Consensus 283 l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 283 IQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEEEECTTSCBCCGG
T ss_pred CCceEEEecCCCcCCCc
Confidence 34578999999998653
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=7.5e-14 Score=127.06 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=48.6
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~ 366 (481)
.|.++++|+.|++++|. ...+| .+..++ +|++|++++|.++.+|..+. +++|++|++++|+++.+| .
T Consensus 43 ~~~~l~~L~~L~ls~n~---------l~~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~ 110 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN---------IEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-G 110 (198)
T ss_dssp HHHHTTTCSEEECSEEE---------ESCCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-H
T ss_pred HHhcCCCCCEEECCCCC---------Ccccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-c
Confidence 45555555555555444 22233 444444 55555555555555544333 344555555555554444 3
Q ss_pred ccCCCCCcEEeccCCCCCcccCC---CCCCCCCCEEeccC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLD---LSETPNLERTNLLN 403 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~ 403 (481)
+..+++|++|++++|. +..+|. +..+++|++|++++
T Consensus 111 ~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECS
T ss_pred cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecC
Confidence 4444555555555442 333332 44444455555544
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=4.5e-10 Score=99.84 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=70.6
Q ss_pred cccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEec
Q 036657 327 ELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNL 401 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L 401 (481)
+|++|+++++.++.+|.. |. +.+|++|++++|.++.+|.. +..+++|++|++++|. +..+|. ++.+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEEC
Confidence 777777777777777665 33 77777777777777777654 5677777777777773 666665 677777777777
Q ss_pred cCCCCCcccccc-ccCCCCCCEEeeeCC
Q 036657 402 LNCRDLACVRSS-IENFNNLSMLCFKGC 428 (481)
Q Consensus 402 ~~c~~l~~lp~~-i~~L~~L~~L~l~~c 428 (481)
+++ .+..+|.. +..+++|++|+++++
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 774 55666655 466777777777764
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=4.6e-10 Score=99.73 Aligned_cols=96 Identities=11% Similarity=0.209 Sum_probs=57.0
Q ss_pred cceeeccccCCCCCCCCCCCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 329 RYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 329 r~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
+.++++++.+..+|..+. .+|++|+|++|++..+ |..+..+++|++|+|++| .+..+|. +..+++|++|+|++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-C
Confidence 455566666666665543 5666666666666655 334566666666666666 3555654 45666666666665 3
Q ss_pred CCcccccc-ccCCCCCCEEeeeC
Q 036657 406 DLACVRSS-IENFNNLSMLCFKG 427 (481)
Q Consensus 406 ~l~~lp~~-i~~L~~L~~L~l~~ 427 (481)
.+..+|.. ++.+++|++|++++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCS
T ss_pred ccceeCHHHhccccCCCEEEeCC
Confidence 45555544 55666666666664
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=1.9e-12 Score=117.66 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=106.9
Q ss_pred ecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCC
Q 036657 316 HLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETP 394 (481)
Q Consensus 316 ~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~ 394 (481)
.+|..+..++ +|++|++++|.++.+| .+. +.+|++|++++|.++.+|..+..+++|++|++++|. +..+|.++.++
T Consensus 39 ~l~~~~~~l~-~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLK-ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGIEKLV 115 (198)
T ss_dssp CCHHHHHHTT-TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHH
T ss_pred hhhHHHhcCC-CCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCCccccCC
Confidence 3444788888 9999999999999999 555 999999999999999999888888999999999994 88888888999
Q ss_pred CCCEEeccCCCCCccccc--cccCCCCCCEEeeeCCCCCccC-CCC----------C-CCCCCcEEEe
Q 036657 395 NLERTNLLNCRDLACVRS--SIENFNNLSMLCFKGCESLRSF-PRG----------I-HFVSPITIDF 448 (481)
Q Consensus 395 ~L~~L~L~~c~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~l-p~~----------~-~l~~L~~L~l 448 (481)
+|++|++++| .+..+|. .+..+++|++|+++++ .+... |.. + .+++|+.|+-
T Consensus 116 ~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred CCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 9999999995 5666654 6899999999999985 44433 321 3 3889999873
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=6.7e-10 Score=98.23 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=60.3
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNC 404 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c 404 (481)
.+.++++++.++.+|..+ +.+|++|+|++|+++.+ |..+..+++|++|+|++|. +..+|. |..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC-
Confidence 455666666666666554 36666667766666666 3346666667777776663 666654 56666666666666
Q ss_pred CCCcccccc-ccCCCCCCEEeeeC
Q 036657 405 RDLACVRSS-IENFNNLSMLCFKG 427 (481)
Q Consensus 405 ~~l~~lp~~-i~~L~~L~~L~l~~ 427 (481)
+.+..+|.. ++.+++|++|++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCC
Confidence 345555543 56666666666665
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.06 E-value=1.5e-11 Score=126.39 Aligned_cols=177 Identities=16% Similarity=0.074 Sum_probs=109.1
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC------CCCC-CCCCceEEEcCCCCccc--
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML------PFDF-EPENLIELNLPYSKVEQ-- 362 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l------P~~~-~l~~L~~L~L~~~~i~~-- 362 (481)
+++|+.|++++|.+. ......++..+..++ +|++|++++|.+... +..+ .+.+|++|++++|.++.
T Consensus 198 ~~~L~~L~L~~n~l~----~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 198 PCQLEALKLESCGVT----SDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp CCCCCEEECTTSCCB----TTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred CCCceEEEccCCCCc----HHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 557777777776631 000112455555666 788888887766542 2122 26678888888887775
Q ss_pred ---ccccccCCCCCcEEeccCCCCCccc-----CC--CCCCCCCCEEeccCCCCCc----cccccccCCCCCCEEeeeCC
Q 036657 363 ---IWKGEKKAFKLKYIDISHSQQLVRM-----LD--LSETPNLERTNLLNCRDLA----CVRSSIENFNNLSMLCFKGC 428 (481)
Q Consensus 363 ---lp~~~~~L~~L~~L~Ls~~~~l~~l-----p~--~~~l~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~l~~c 428 (481)
++..+..+++|++|++++|. +... +. ....++|++|++++|.--. .++..+..+++|++|++++|
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 66667777888888888774 4422 11 1234678888888765322 24566677788888888865
Q ss_pred CCCccCC-----CCCC--CCCCcEEEeecCCCCC-----ccCCc---ccccceEeeeCcCCcc
Q 036657 429 ESLRSFP-----RGIH--FVSPITIDFSFCVNLT-----EFPQI---SGNIIELKLWYTAIEE 476 (481)
Q Consensus 429 ~~l~~lp-----~~~~--l~~L~~L~l~~c~~L~-----~lp~~---~~~L~~L~L~~~~l~~ 476 (481)
.+.... ..+. .++|++|++++|. +. .+|.. ..+|++|++++|.++.
T Consensus 352 -~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 352 -RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp -BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred -ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 444321 1111 5678888888874 55 45553 4567788888877753
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.01 E-value=7.3e-12 Score=128.65 Aligned_cols=182 Identities=16% Similarity=0.097 Sum_probs=109.9
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccc-cccccccceeeccccCCC-----CCCCCC-CCCceEEEcCCC
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLE-YLPEELRYLHWHEYSLKM-----LPFDFE-PENLIELNLPYS 358 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~-----lP~~~~-l~~L~~L~L~~~ 358 (481)
+..+..+++|+.|++++|.+. +.....+...+. ..+ +|++|++++|.+.. +|..+. +++|++|++++|
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~----~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDIN----EAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCH----HHHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHhhCCCCCEEECcCCCcc----hHHHHHHHHHHhcCCC-CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 455667788888888877630 000001111111 133 78888888887765 344444 678888888888
Q ss_pred Ccccc-----ccc-ccCCCCCcEEeccCCCCCcc-----cCC-CCCCCCCCEEeccCCCCCcc----cccccc-CCCCCC
Q 036657 359 KVEQI-----WKG-EKKAFKLKYIDISHSQQLVR-----MLD-LSETPNLERTNLLNCRDLAC----VRSSIE-NFNNLS 421 (481)
Q Consensus 359 ~i~~l-----p~~-~~~L~~L~~L~Ls~~~~l~~-----lp~-~~~l~~L~~L~L~~c~~l~~----lp~~i~-~L~~L~ 421 (481)
.+... ... ...+++|++|++++| .+.. +|. +..+++|++|++++|.--.. +...+. ..++|+
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 76642 122 335778888888888 3655 454 66678888888887642211 222222 235788
Q ss_pred EEeeeCCCCCcc-----CCCCC-CCCCCcEEEeecCCCCCccC-C----c----ccccceEeeeCcCCc
Q 036657 422 MLCFKGCESLRS-----FPRGI-HFVSPITIDFSFCVNLTEFP-Q----I----SGNIIELKLWYTAIE 475 (481)
Q Consensus 422 ~L~l~~c~~l~~-----lp~~~-~l~~L~~L~l~~c~~L~~lp-~----~----~~~L~~L~L~~~~l~ 475 (481)
+|++++|. +.. +|..+ .+++|++|++++|. +.... . . ..+|++|+|++|.++
T Consensus 317 ~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 317 SLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp EEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred eeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 88888763 433 23333 26888899988874 54421 1 1 347889999988887
No 141
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=98.99 E-value=2.3e-11 Score=105.07 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=48.7
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHH-hHhhCCCeEEeEEee-cCCccc
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILD-CKKMNGQIVIPVFYQ-VDPSDV 57 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~-~~~~~~~~v~pvfy~-v~p~~v 57 (481)
++.+||++|++.|||+|+||+.|.||+.|+..++. +.+.++++|+||||+ |++.++
T Consensus 53 ~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 53 NIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 58899999999999999999999999999999885 456678889999995 666444
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=1.5e-09 Score=96.30 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=85.3
Q ss_pred cEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc-ccCCCC
Q 036657 296 RLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG-EKKAFK 372 (481)
Q Consensus 296 r~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~ 372 (481)
+.++++++. ...+|..+. .+|++|++++|.++.+|+ .|. +.+|++|+|++|+++.+|.+ +..+++
T Consensus 15 ~~l~~~~n~---------l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIR---------LASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSC---------CSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCC---------CCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 577888776 456776553 499999999999999855 465 99999999999999999887 588999
Q ss_pred CcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccc
Q 036657 373 LKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSI 414 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i 414 (481)
|++|+|++|. +..+|. +..+++|++|+++++ .+...+..+
T Consensus 83 L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~~~ 124 (174)
T 2r9u_A 83 LTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNN-PWDCECRDI 124 (174)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CBCTTBGGG
T ss_pred hhEEECCCCc-cceeCHHHhccccCCCEEEeCCC-CcccccccH
Confidence 9999999994 888886 889999999999984 455444433
No 143
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=98.97 E-value=7.2e-11 Score=103.02 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=47.0
Q ss_pred hHHHHhh-hCCEEEEEEcCCCcchhhHHHHHHHHHHhH-hhCCCeEEeEEeecCC
Q 036657 2 AISNAIE-TSDISIIIFSKDYASSKWCLNELVKILDCK-KMNGQIVIPVFYQVDP 54 (481)
Q Consensus 2 ~~~~ai~-~s~~~ivv~s~~ya~s~~cl~el~~i~~~~-~~~~~~v~pvfy~v~p 54 (481)
++.+||+ .|+..|||+|+||+.|.||+.|+..++++. +.++++|+||||+.-+
T Consensus 63 ~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 63 IASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp CCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 5789999 699999999999999999999999999985 4556789999998643
No 144
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=98.94 E-value=7.1e-11 Score=104.77 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=43.3
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHh-HhhCCCeEEeEEee-cCCc
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDC-KKMNGQIVIPVFYQ-VDPS 55 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~-~~~~~~~v~pvfy~-v~p~ 55 (481)
++.+||++||..|||+|+||++|.||+.|+..++.+ .+.++++|+||||+ +++.
T Consensus 83 ~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~ 138 (178)
T 2j67_A 83 NIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFY 138 (178)
T ss_dssp HHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSCCCGG
T ss_pred HHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChH
Confidence 578999999999999999999999999999999975 45677899999997 4443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=5.3e-09 Score=92.37 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=82.0
Q ss_pred CcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc-ccCCC
Q 036657 295 LRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG-EKKAF 371 (481)
Q Consensus 295 Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~-~~~L~ 371 (481)
.+.++++++. ...+|..+ +.+|++|++++|.++.+++ .|. +.+|++|+|++|+++.+|.+ +..++
T Consensus 11 ~~~l~~s~n~---------l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSGKS---------LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp TTEEECTTSC---------CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEEEeCCCC---------cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 4678888777 45577655 3499999999999999855 465 99999999999999999876 58999
Q ss_pred CCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 372 KLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
+|++|+|++|. +..+|. +..+++|++|+++++.
T Consensus 79 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 79 QLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99999999994 888876 8899999999999853
No 146
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=98.90 E-value=4.7e-10 Score=97.71 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=49.0
Q ss_pred hHHHHhhhCCEEEEEEcCCCc-chhhHHHHHHHHHHhH-hhCCCeEEeEEeecCCcc
Q 036657 2 AISNAIETSDISIIIFSKDYA-SSKWCLNELVKILDCK-KMNGQIVIPVFYQVDPSD 56 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya-~s~~cl~el~~i~~~~-~~~~~~v~pvfy~v~p~~ 56 (481)
++.+||++||..|||+|+||+ .|.||+.|+..++.|. +.++++|+||||.-.|..
T Consensus 60 ~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~ 116 (159)
T 1t3g_A 60 DVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGI 116 (159)
T ss_dssp HHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSH
T ss_pred HHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEecccccc
Confidence 578999999999999999996 9999999999999985 667889999999866543
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.84 E-value=4.4e-10 Score=119.15 Aligned_cols=147 Identities=12% Similarity=-0.000 Sum_probs=73.8
Q ss_pred cccceeeccccCCC-----CCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEecc---------------------
Q 036657 327 ELRYLHWHEYSLKM-----LPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDIS--------------------- 379 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~-----lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls--------------------- 379 (481)
+|++|+++++.+.. ++..+. +++|++|++++|.+..+|..+..+++|++|+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 55555555554432 121111 455555555555555555444555555555554
Q ss_pred ------CCCCCcccCC-CCCCCCCCEEeccCCCCCcc--ccccccCCCCCCEEeeeCCCCCccCCCCC-CCCCCcEEEee
Q 036657 380 ------HSQQLVRMLD-LSETPNLERTNLLNCRDLAC--VRSSIENFNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFS 449 (481)
Q Consensus 380 ------~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~lp~~~-~l~~L~~L~l~ 449 (481)
++ ....+|. +..+++|++|++++|. +.. ++..++.+++|++|++.++..-..++... .+++|++|+++
T Consensus 273 ~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 273 CRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 33 2333343 3445556666666554 211 11224555666666665321111122211 26778888888
Q ss_pred c----------CCCCCc--cCC---cccccceEeeeCcCCc
Q 036657 450 F----------CVNLTE--FPQ---ISGNIIELKLWYTAIE 475 (481)
Q Consensus 450 ~----------c~~L~~--lp~---~~~~L~~L~L~~~~l~ 475 (481)
+ |..+.. ++. ..++|++|+++++.++
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence 4 666653 222 3567888888877775
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.84 E-value=1e-09 Score=116.19 Aligned_cols=85 Identities=15% Similarity=0.029 Sum_probs=39.8
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC----CCCCCCC-CCCceEEEcCCCCccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK----MLPFDFE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~----~lP~~~~-l~~L~~L~L~~~~i~~ 362 (481)
.+.++++|+.|++.+|. ...+|..+..++ +|+.|++.++... ..+..+. +.+|+.|+++++....
T Consensus 215 ~~~~~~~L~~L~L~~~~---------~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 284 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDFE---------ILELVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284 (592)
T ss_dssp HHHHCTTCCEEECSSCB---------GGGGHHHHHHCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT
T ss_pred HHhhCCCCcEEeccCcc---------HHHHHHHHhhhh-HHHhhcccccccccchHHHHHHhhccccccccCccccchhH
Confidence 34456666666666554 222444444444 5555555432111 1112222 4455555555544444
Q ss_pred ccccccCCCCCcEEeccCCC
Q 036657 363 IWKGEKKAFKLKYIDISHSQ 382 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~ 382 (481)
+|..+..+++|++|++++|.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC
T ss_pred HHHHHhhcCCCcEEecCCCc
Confidence 45445555555555555553
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.7e-08 Score=98.92 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=86.7
Q ss_pred ccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCC-----------------CC
Q 036657 324 LPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHS-----------------QQ 383 (481)
Q Consensus 324 l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~-----------------~~ 383 (481)
++ +|+.|.+.. .++.++.. |. +.+|++|+++++.+..++.. +....++..+.+... ..
T Consensus 100 ~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 55 778888877 77777765 44 77888888887776655443 444444544443331 00
Q ss_pred Cc---------ccCC--------------------C---------CCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEe
Q 036657 384 LV---------RMLD--------------------L---------SETPNLERTNLLNCRDLACVRSS-IENFNNLSMLC 424 (481)
Q Consensus 384 l~---------~lp~--------------------~---------~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~ 424 (481)
+. .+|. + ..+++|+.|++.+ +.+..+|.. |.++++|+.|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhhCCCCCCEEE
Confidence 00 0000 0 0156677777765 335566543 66677777777
Q ss_pred eeCCCCCccCCCCC--CCCCCc-EEEeecCCCCCccCC----cccccceEeeeCcCCccCCC
Q 036657 425 FKGCESLRSFPRGI--HFVSPI-TIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 425 l~~c~~l~~lp~~~--~l~~L~-~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~ 479 (481)
+.+ +++.++... ++++|+ .+.+.+ +++.++. ...+|+.|++++++++.++.
T Consensus 257 l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 257 LPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred CCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 764 366666543 366777 777766 4666664 23456777777777766665
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.80 E-value=5.9e-10 Score=118.09 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=97.8
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCC-----CCCCC-CCCCceEEEcCCCC--cc-
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKM-----LPFDF-EPENLIELNLPYSK--VE- 361 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lP~~~-~l~~L~~L~L~~~~--i~- 361 (481)
.+++|+.|++.+|.. .....++.....++ +|++|++++|.+.. ++... .+.+|++|+++++. +.
T Consensus 128 ~~~~L~~L~L~~~~~------~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEG------FSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HCTTCCEEEEESCEE------EEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred hCCCCcEEeCCCcCC------CCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 577888888887631 00111333334566 88888888776443 22222 26688888888775 21
Q ss_pred -cccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCC-------------------CCCcc-----------
Q 036657 362 -QIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNC-------------------RDLAC----------- 409 (481)
Q Consensus 362 -~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c-------------------~~l~~----------- 409 (481)
.++.-...+++|++|++++|..+..+|. +..+++|++|.+.+| .++..
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~ 280 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh
Confidence 2222234578888888888765666665 667777777765433 22222
Q ss_pred ccccccCCCCCCEEeeeCCCCCcc--CCCCC-CCCCCcEEEeecCCCCCccCC---cccccceEeee
Q 036657 410 VRSSIENFNNLSMLCFKGCESLRS--FPRGI-HFVSPITIDFSFCVNLTEFPQ---ISGNIIELKLW 470 (481)
Q Consensus 410 lp~~i~~L~~L~~L~l~~c~~l~~--lp~~~-~l~~L~~L~l~~c~~L~~lp~---~~~~L~~L~L~ 470 (481)
+|..+..+++|++|++++|. +.. ++..+ ++++|++|++++|..-..++. ...+|++|++.
T Consensus 281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 22223355677777777665 432 11111 367777777777621111221 24567788773
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=4.2e-08 Score=96.09 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=116.4
Q ss_pred ccChHhhcc--------CCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-CC-CCCce
Q 036657 283 HLNPQAFAN--------MSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLI 351 (481)
Q Consensus 283 ~~~~~~f~~--------l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~ 351 (481)
.+...+|.+ +++|+.|.+.+ . ...+++ .|..++ +|+.|++.++.+..+++. |. ..++.
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~---------i~~I~~~aF~~~~-~L~~l~l~~n~i~~i~~~aF~~~~~l~ 151 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-K---------IKNIEDAAFKGCD-NLKICQIRKKTAPNLLPEALADSVTAI 151 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-T---------CCEECTTTTTTCT-TCCEEEBCCSSCCEECTTSSCTTTCEE
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-c---------ccchhHHHhhcCc-ccceEEcCCCCccccchhhhcCCCceE
Confidence 455667777 88888888876 3 233443 566666 788888887777777665 33 55565
Q ss_pred EEEcCCCCc-------c--------------------ccccc---------------------------c-cCCCCCcEE
Q 036657 352 ELNLPYSKV-------E--------------------QIWKG---------------------------E-KKAFKLKYI 376 (481)
Q Consensus 352 ~L~L~~~~i-------~--------------------~lp~~---------------------------~-~~L~~L~~L 376 (481)
++.+..+.. . .++.. + ..+++|+.|
T Consensus 152 ~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 152 FIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL 231 (329)
T ss_dssp EECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEE
T ss_pred EecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEE
Confidence 555444110 0 00000 0 127899999
Q ss_pred eccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCC-EEeeeCCCCCccCCCCC--CCCCCcEEEeec
Q 036657 377 DISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLS-MLCFKGCESLRSFPRGI--HFVSPITIDFSF 450 (481)
Q Consensus 377 ~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~-~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~ 450 (481)
++++| .+..+|+ |.++++|+.|++.+ ++..++.. |.++++|+ .+++.+ +++.++... ++++|+.+++++
T Consensus 232 ~L~~n-~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 232 DISKT-NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp ECTTB-CCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS
T ss_pred ECCCC-CcceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC
Confidence 99988 4899997 89999999999987 37777754 78899999 999985 788887644 499999999977
Q ss_pred CCCCCccCCc----ccccceEe
Q 036657 451 CVNLTEFPQI----SGNIIELK 468 (481)
Q Consensus 451 c~~L~~lp~~----~~~L~~L~ 468 (481)
+++..++.. ..+|+.++
T Consensus 307 -n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 307 -DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -SCCCEECTTTTCTTCCCCEEE
T ss_pred -CccCccchhhhcCCcchhhhc
Confidence 458888872 34556655
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.71 E-value=6.7e-10 Score=117.69 Aligned_cols=203 Identities=14% Similarity=0.035 Sum_probs=125.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC--
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-- 344 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-- 344 (481)
..++.+.+.....-........+.++++|+.|++.+|.+. +.....++.....++ +|++|+++++. ..++..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~----~~~~~~l~~~~~~~~-~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD----DVSGHWLSHFPDTYT-SLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE----CCCGGGGGGSCTTCC-CCCEEECTTCC-SCCCHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC----CcchHHHHHHhhcCC-cCcEEEecccC-CcCCHHHH
Confidence 4667776653311000012344558999999999987631 000112333334566 89999999886 222211
Q ss_pred ---CC-CCCceEEEcCCC-CcccccccccCCCCCcEEeccCC-------------------CCCccc-----------CC
Q 036657 345 ---FE-PENLIELNLPYS-KVEQIWKGEKKAFKLKYIDISHS-------------------QQLVRM-----------LD 389 (481)
Q Consensus 345 ---~~-l~~L~~L~L~~~-~i~~lp~~~~~L~~L~~L~Ls~~-------------------~~l~~l-----------p~ 389 (481)
+. +++|++|++++| .+..+|..+..+++|++|+++.+ ..++.+ |.
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 11 589999999988 66677777888899999986544 222222 22
Q ss_pred -CCCCCCCCEEeccCCCCCcc--ccccccCCCCCCEEeeeCCCCCccCCCCC-CCCCCcEEEeec--------CCCCCc-
Q 036657 390 -LSETPNLERTNLLNCRDLAC--VRSSIENFNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFSF--------CVNLTE- 456 (481)
Q Consensus 390 -~~~l~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~lp~~~-~l~~L~~L~l~~--------c~~L~~- 456 (481)
+..+++|++|++++|. +.. ++..+.++++|++|++.+|..-..++... .+++|++|++++ |..+..
T Consensus 284 ~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 1256899999999987 432 23336688999999999872212222222 378999999954 344432
Q ss_pred ----cCCcccccceEeeeCcCCcc
Q 036657 457 ----FPQISGNIIELKLWYTAIEE 476 (481)
Q Consensus 457 ----lp~~~~~L~~L~L~~~~l~~ 476 (481)
+....++|++|.+.++.++.
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCH
T ss_pred HHHHHHHhchhHHHHHHhcCCcCH
Confidence 11235688999888888753
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=2.7e-07 Score=92.95 Aligned_cols=176 Identities=16% Similarity=0.156 Sum_probs=98.7
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVE 361 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~ 361 (481)
+...+|.++.+|+.+.+.+|. ...++....... +|+.+.+..+ ++.++.. |. +.+|+.+++..+ ++
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~---------l~~I~~~aF~~~-~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTK---------ITKLPASTFVYA-GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS 238 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSC---------CSEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC
T ss_pred ehHHHhhCcccCCeeecCCCc---------ceEechhhEeec-ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc
Confidence 445667777777777776655 334444333333 6666666532 5555554 33 566666666653 44
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCC----Ccccc-ccccCCCCCCEEeeeCCCCCcc
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRD----LACVR-SSIENFNNLSMLCFKGCESLRS 433 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~----l~~lp-~~i~~L~~L~~L~l~~c~~l~~ 433 (481)
.++.. +.+ .+|+.+.+.. .++.++. |.++++|+.+.+.++.. ...++ ..|.++++|+.+.+. ++++.
T Consensus 239 ~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~ 313 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRI 313 (401)
T ss_dssp EECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCE
T ss_pred Ccccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC--CceEE
Confidence 44443 233 5566666643 2556654 66677777777665221 11233 236666777777776 34666
Q ss_pred CCCCC--CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccCCC
Q 036657 434 FPRGI--HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 434 lp~~~--~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~ 479 (481)
++... ++++|+.+.|.. ++..++. .. +|+.+++.+|.+..++.
T Consensus 314 I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp ECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred EhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 66543 367777777744 3555554 12 66777777766655543
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=5.1e-08 Score=96.12 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=52.6
Q ss_pred eecCCccccccccccceeecc-ccCCCCCCC-CC-CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC-
Q 036657 315 LHLDQGLEYLPEELRYLHWHE-YSLKMLPFD-FE-PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD- 389 (481)
Q Consensus 315 ~~l~~~l~~l~~~Lr~L~l~~-~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~- 389 (481)
..+|. +..+. +|++|++++ |.+..+|+. |. +.+|++|+|++|+++.++. .+..|++|++|+|++|. +..+|.
T Consensus 22 ~~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 22 DSLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp TTTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred CccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 34666 66555 667777764 666666643 44 6667777777776666544 35666677777776663 666664
Q ss_pred -CCCCCCCCEEeccCC
Q 036657 390 -LSETPNLERTNLLNC 404 (481)
Q Consensus 390 -~~~l~~L~~L~L~~c 404 (481)
+..++ |+.|+|.++
T Consensus 99 ~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGN 113 (347)
T ss_dssp TTCSCC-CCEEECCSS
T ss_pred HcccCC-ceEEEeeCC
Confidence 33333 666666653
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=2.2e-07 Score=91.54 Aligned_cols=99 Identities=23% Similarity=0.215 Sum_probs=78.3
Q ss_pred ceeeccc-cCCCCCCCCC-CCCceEEEcCC-CCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 330 YLHWHEY-SLKMLPFDFE-PENLIELNLPY-SKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 330 ~L~l~~~-~l~~lP~~~~-l~~L~~L~L~~-~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
.++.+++ .++.+|. +. +.+|++|+|++ |.+..+|. .+..|++|++|+|++|. +..+|. |+++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 4567777 7888998 76 88899999996 89998874 58889999999999984 777765 78899999999998
Q ss_pred CCCCccccccccCCCCCCEEeeeCCCCCc
Q 036657 404 CRDLACVRSSIENFNNLSMLCFKGCESLR 432 (481)
Q Consensus 404 c~~l~~lp~~i~~L~~L~~L~l~~c~~l~ 432 (481)
+.+..+|..+....+|+.|++.+ +.+.
T Consensus 90 -N~l~~~~~~~~~~~~L~~l~l~~-N~~~ 116 (347)
T 2ifg_A 90 -NALESLSWKTVQGLSLQELVLSG-NPLH 116 (347)
T ss_dssp -SCCSCCCSTTTCSCCCCEEECCS-SCCC
T ss_pred -CccceeCHHHcccCCceEEEeeC-CCcc
Confidence 56778887654444499999886 4444
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=2.5e-06 Score=85.84 Aligned_cols=174 Identities=15% Similarity=0.162 Sum_probs=106.8
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecC-CccccccccccceeeccccCCCCCCC-CCCCCceEEEcCCCCcc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHEYSLKMLPFD-FEPENLIELNLPYSKVE 361 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~l~~L~~L~L~~~~i~ 361 (481)
+...+|.++ +|+.+.+.++ ...++ ..|..++ +|+.+++.++.++.+|.. |...+|+.+.+..+ ++
T Consensus 149 I~~~aF~~~-~L~~i~lp~~----------l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~ 215 (401)
T 4fdw_A 149 IGDMAFFNS-TVQEIVFPST----------LEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK 215 (401)
T ss_dssp ECTTTTTTC-CCCEEECCTT----------CCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC
T ss_pred ECHHhcCCC-CceEEEeCCC----------ccEehHHHhhCcc-cCCeeecCCCcceEechhhEeecccCEEEeCCc-hh
Confidence 344455553 4555555432 12232 3455555 777777777777777765 44667777777643 66
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeeeCCCCCc-----
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFKGCESLR----- 432 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~----- 432 (481)
.++.. +.++++|+.+++..+ +..++. |.+ .+|+.+.+. .++..++. .|.++++|+.+.+.+. .+.
T Consensus 216 ~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~ 289 (401)
T 4fdw_A 216 EIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP--NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEA 289 (401)
T ss_dssp EECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE--TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTC
T ss_pred eehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC--CCccEEChhHhhCCCCCCEEEeCCc-cccCCccc
Confidence 66543 666777777777653 666665 555 677777775 34556643 4777888888888752 222
Q ss_pred cCCCCC--CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCC
Q 036657 433 SFPRGI--HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 433 ~lp~~~--~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~ 479 (481)
.++... ++++|+.+.+.+ .++.++.. ..+|+.++|.. +++.++.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~ 339 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA-NVTQINF 339 (401)
T ss_dssp EECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT-TCCEECT
T ss_pred EECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc-cccEEcH
Confidence 355433 488888888874 47777762 35678888854 3655543
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=1.9e-07 Score=92.59 Aligned_cols=186 Identities=10% Similarity=0.067 Sum_probs=111.2
Q ss_pred CCCCcceeeeeecCCcccc-c-----ccChHhhccCCCCcEEEEeCCCCCCCccc--CcceecCCccccccccccceeec
Q 036657 263 NKGTDKVEGIFLDLSKIND-I-----HLNPQAFANMSNLRLLKFYMPKHNDIPIM--SSKLHLDQGLEYLPEELRYLHWH 334 (481)
Q Consensus 263 ~~~~~~v~~i~l~~~~~~~-~-----~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~--~~~~~l~~~l~~l~~~Lr~L~l~ 334 (481)
......++.+.+....... . .....+..++++|+.|.+.+..... +.. .....++..+..+| +|+.|+++
T Consensus 103 ~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~-~~is~~~~~~L~~ll~~~P-~L~~L~L~ 180 (362)
T 2ra8_A 103 DKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEE-QEISWIEQVDLSPVLDAMP-LLNNLKIK 180 (362)
T ss_dssp CTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTT-CCGGGCBCCBCHHHHHTCT-TCCEEEEE
T ss_pred CCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhh-cccccccccCHHHHHhcCC-CCcEEEEe
Confidence 3345567777776433210 0 0012235578899999997643100 000 00112333445567 99999998
Q ss_pred cccCCCCCCCCCCCCceEEEcCCCCcccc-cccc--cCCCCCcEEeccCCCC-------CcccCC-C--CCCCCCCEEec
Q 036657 335 EYSLKMLPFDFEPENLIELNLPYSKVEQI-WKGE--KKAFKLKYIDISHSQQ-------LVRMLD-L--SETPNLERTNL 401 (481)
Q Consensus 335 ~~~l~~lP~~~~l~~L~~L~L~~~~i~~l-p~~~--~~L~~L~~L~Ls~~~~-------l~~lp~-~--~~l~~L~~L~L 401 (481)
++.-..+|. +.+.+|+.|+|..+.+..- ...+ ..+++|++|+|+.+.+ +..+.. + ..+++|++|.+
T Consensus 181 g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 181 GTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp CCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred CCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 874335555 4578999999988876521 1222 3789999999864211 222222 2 35789999999
Q ss_pred cCCCCCccccccc---cCCCCCCEEeeeCCCCCcc-----CCCCC-CCCCCcEEEeecCC
Q 036657 402 LNCRDLACVRSSI---ENFNNLSMLCFKGCESLRS-----FPRGI-HFVSPITIDFSFCV 452 (481)
Q Consensus 402 ~~c~~l~~lp~~i---~~L~~L~~L~l~~c~~l~~-----lp~~~-~l~~L~~L~l~~c~ 452 (481)
.+|......+..+ +.+++|++|+|+. +.+.. ++..+ ++++|+.|++++|.
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 8876443333222 3578899999984 56654 44443 37899999998874
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=3.1e-08 Score=98.82 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=59.0
Q ss_pred cccceeeccccCCCC--CCCCC-CCCceEEEcCCCCcccc-----cccc-cCCCCCcEEeccCCCCCcc-----cCC-CC
Q 036657 327 ELRYLHWHEYSLKML--PFDFE-PENLIELNLPYSKVEQI-----WKGE-KKAFKLKYIDISHSQQLVR-----MLD-LS 391 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~l--P~~~~-l~~L~~L~L~~~~i~~l-----p~~~-~~L~~L~~L~Ls~~~~l~~-----lp~-~~ 391 (481)
+|+.|++++|.+..- ...+. +.+|++|+|++|.+... ...+ ...++|++|+|++|. +.. ++. +.
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLA 180 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHh
Confidence 556666665554321 11111 44566666666655422 1112 234566666666663 433 222 34
Q ss_pred CCCCCCEEeccCCCCCc-----cccccccCCCCCCEEeeeCCCCCccC-----CCCC-CCCCCcEEEeecCC
Q 036657 392 ETPNLERTNLLNCRDLA-----CVRSSIENFNNLSMLCFKGCESLRSF-----PRGI-HFVSPITIDFSFCV 452 (481)
Q Consensus 392 ~l~~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~l~~c~~l~~l-----p~~~-~l~~L~~L~l~~c~ 452 (481)
..++|++|+|++|. +. .++..+...++|+.|++++| .+... +..+ ..++|++|+|++|.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 55566666666643 22 22344555566666666653 33321 1111 14566666666653
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=9.4e-07 Score=77.72 Aligned_cols=94 Identities=13% Similarity=0.209 Sum_probs=53.0
Q ss_pred CCCCCC-CCCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccC--CCCCC----CCCCEEeccCCCCCccc-
Q 036657 340 MLPFDF-EPENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRML--DLSET----PNLERTNLLNCRDLACV- 410 (481)
Q Consensus 340 ~lP~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp--~~~~l----~~L~~L~L~~c~~l~~l- 410 (481)
.+|... .-.+|++||+++|.++.. ...+..+++|++|+|++|..++.-- .++.+ ++|++|+|++|..++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 344433 245688888888876632 2335667777777777776554321 13333 35667777766655431
Q ss_pred cccccCCCCCCEEeeeCCCCCcc
Q 036657 411 RSSIENFNNLSMLCFKGCESLRS 433 (481)
Q Consensus 411 p~~i~~L~~L~~L~l~~c~~l~~ 433 (481)
-..+.++++|++|++++|+.++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 11244566666666666655543
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=2.3e-06 Score=75.19 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=69.2
Q ss_pred cccccccCCCCCcEEeccCCCCCccc--CCCCCCCCCCEEeccCCCCCcccc-ccccCC----CCCCEEeeeCCCCCccC
Q 036657 362 QIWKGEKKAFKLKYIDISHSQQLVRM--LDLSETPNLERTNLLNCRDLACVR-SSIENF----NNLSMLCFKGCESLRSF 434 (481)
Q Consensus 362 ~lp~~~~~L~~L~~L~Ls~~~~l~~l--p~~~~l~~L~~L~L~~c~~l~~lp-~~i~~L----~~L~~L~l~~c~~l~~l 434 (481)
.+|.....-.+|+.||+++|. ++.. ..+.++++|++|+|++|..+..-- ..+..+ ++|++|++++|.+++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 456554444689999999995 6543 337899999999999998765421 224443 47999999999988652
Q ss_pred --CCCCCCCCCcEEEeecCCCCCc
Q 036657 435 --PRGIHFVSPITIDFSFCVNLTE 456 (481)
Q Consensus 435 --p~~~~l~~L~~L~l~~c~~L~~ 456 (481)
....++++|++|++++|+.++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 1112489999999999998875
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=3.5e-07 Score=91.17 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=93.2
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-----C--CCCCceEEEcCCCCccc--
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-----F--EPENLIELNLPYSKVEQ-- 362 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-----~--~l~~L~~L~L~~~~i~~-- 362 (481)
.++|+.|++++|.+. ...+..-...++ +|+.|++++|.+...... + ...+|++|+|++|.++.
T Consensus 100 ~~~L~~L~Ls~n~l~-------~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 100 RHALDEVNLASCQLD-------PAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp SSCEEEEECTTCCCC-------HHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred CCCceEEEecCCCCC-------HHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence 379999999988741 111111122344 899999999987643211 1 24689999999999864
Q ss_pred ---ccccccCCCCCcEEeccCCCCCccc-----CC-CCCCCCCCEEeccCCCCCc----cccccccCCCCCCEEeeeCCC
Q 036657 363 ---IWKGEKKAFKLKYIDISHSQQLVRM-----LD-LSETPNLERTNLLNCRDLA----CVRSSIENFNNLSMLCFKGCE 429 (481)
Q Consensus 363 ---lp~~~~~L~~L~~L~Ls~~~~l~~l-----p~-~~~l~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~l~~c~ 429 (481)
++..+...++|++|+|++|. +... +. +...++|++|+|++|.--. .++..+...++|++|++++|
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N- 249 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN- 249 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-
T ss_pred HHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-
Confidence 55667889999999999995 6543 33 6677899999999975322 34555667899999999975
Q ss_pred CCcc
Q 036657 430 SLRS 433 (481)
Q Consensus 430 ~l~~ 433 (481)
.+..
T Consensus 250 ~i~~ 253 (372)
T 3un9_A 250 ELSS 253 (372)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 4543
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=1.9e-05 Score=78.23 Aligned_cols=179 Identities=18% Similarity=0.169 Sum_probs=107.7
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC----------CCCCCCC-CCCceEEEcCCCCcc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK----------MLPFDFE-PENLIELNLPYSKVE 361 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~----------~lP~~~~-l~~L~~L~L~~~~i~ 361 (481)
..++.|.+..+.+...........+...+..++ +|+.|.+.+.... .++..+. +++|+.|+|+++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~-~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFA-HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHT-TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcc-hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 356778777544210000000112344566677 9999988654322 1222222 679999999987323
Q ss_pred cccccccCCCCCcEEeccCCCCCcccC--CC--CCCCCCCEEeccCCC-------CCccccccc--cCCCCCCEEeeeCC
Q 036657 362 QIWKGEKKAFKLKYIDISHSQQLVRML--DL--SETPNLERTNLLNCR-------DLACVRSSI--ENFNNLSMLCFKGC 428 (481)
Q Consensus 362 ~lp~~~~~L~~L~~L~Ls~~~~l~~lp--~~--~~l~~L~~L~L~~c~-------~l~~lp~~i--~~L~~L~~L~l~~c 428 (481)
.++. + .+++|++|++..|. +..-. .+ ..+|+|++|+|+.+. .+..+...+ +.+++|++|++.+|
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 4544 4 38999999998774 32211 13 378999999986321 122222223 35799999999986
Q ss_pred CCCccCC----CCCCCCCCcEEEeecCCCCCc-----cCCc---ccccceEeeeCcCCcc
Q 036657 429 ESLRSFP----RGIHFVSPITIDFSFCVNLTE-----FPQI---SGNIIELKLWYTAIEE 476 (481)
Q Consensus 429 ~~l~~lp----~~~~l~~L~~L~l~~c~~L~~-----lp~~---~~~L~~L~L~~~~l~~ 476 (481)
.-....+ ....+++|++|+|+.| .+.. ++.. +.+|+.|+|++|.|++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 4322111 1113789999999875 4665 4433 4678999999988753
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=5.6e-06 Score=78.12 Aligned_cols=78 Identities=24% Similarity=0.183 Sum_probs=53.7
Q ss_pred CCCceEEEcCCCCccccc---ccccCCCCCcEEeccCCCCCcccCCCCCCC--CCCEEeccCCCCCcccc-------ccc
Q 036657 347 PENLIELNLPYSKVEQIW---KGEKKAFKLKYIDISHSQQLVRMLDLSETP--NLERTNLLNCRDLACVR-------SSI 414 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp---~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~--~L~~L~L~~c~~l~~lp-------~~i 414 (481)
+.+|++|+|++|++..++ ..+..+++|+.|+|++|. +..+.++..+. +|++|+|+++.-...+| ..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 568888888888877654 445678888888888884 66665444333 78888888865433343 225
Q ss_pred cCCCCCCEEee
Q 036657 415 ENFNNLSMLCF 425 (481)
Q Consensus 415 ~~L~~L~~L~l 425 (481)
..+++|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 67778877763
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.20 E-value=4e-05 Score=68.19 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=14.8
Q ss_pred hHhhccCCCCcEEEEeCC-CC
Q 036657 286 PQAFANMSNLRLLKFYMP-KH 305 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~-~~ 305 (481)
...+...++|+.|++++| .+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i 49 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNI 49 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTC
T ss_pred HHHHhcCCCCCEEEecCCCCC
Confidence 455677888888888877 53
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.09 E-value=0.00023 Score=66.98 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=22.1
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML 341 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l 341 (481)
.++++|+.|++++|.+. ....+|..+..++ +|++|++++|.++.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~------~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY------RLDDMSSIVQKAP-NLKILNLSGNELKSE 211 (267)
T ss_dssp HHCTTCCEEECTTSCCC------CCGGGTTHHHHST-TCCEEECTTSCCCSG
T ss_pred hhCCCCCEEECCCCCCC------CCccchhHHhhCC-CCCEEECCCCccCCc
Confidence 45667777777766631 0012333334444 555555555544443
No 166
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.96 E-value=0.00018 Score=63.93 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=54.2
Q ss_pred CCceEEEcCCC-Ccc-----cccccccCCCCCcEEeccCCCCCcc-----cCC-CCCCCCCCEEeccCCCCCc----ccc
Q 036657 348 ENLIELNLPYS-KVE-----QIWKGEKKAFKLKYIDISHSQQLVR-----MLD-LSETPNLERTNLLNCRDLA----CVR 411 (481)
Q Consensus 348 ~~L~~L~L~~~-~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~~-----lp~-~~~l~~L~~L~L~~c~~l~----~lp 411 (481)
.+|++|+|++| .+. .+...+...++|++|+|++|. +.. +.. +...++|++|+|++|.--. .+.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 45666666665 553 234445556666666666663 332 111 3344566677776643211 134
Q ss_pred ccccCCCCCCEEee--eCCCCCcc-----CCCCC-CCCCCcEEEeecCC
Q 036657 412 SSIENFNNLSMLCF--KGCESLRS-----FPRGI-HFVSPITIDFSFCV 452 (481)
Q Consensus 412 ~~i~~L~~L~~L~l--~~c~~l~~-----lp~~~-~l~~L~~L~l~~c~ 452 (481)
..+...++|++|++ ++ +.+.. +...+ ..++|++|++++|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 45566667777777 43 34432 11112 14667777777653
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.78 E-value=0.034 Score=55.11 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=33.5
Q ss_pred cCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCC--CCCC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGI--HFVS 442 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~ 442 (481)
..+.+|+.+.+..+ +..++. |.++++|+.+.+. ..+..++.. |.++.+|+.+.+.. +++.++... ++++
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred eecccccEEecccc--cceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 34445555555432 233333 4445555555553 233334332 44455555555542 344444322 2455
Q ss_pred CcEEEe
Q 036657 443 PITIDF 448 (481)
Q Consensus 443 L~~L~l 448 (481)
|+.+.|
T Consensus 336 L~~i~i 341 (394)
T 4gt6_A 336 LERIAI 341 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 555555
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.75 E-value=0.017 Score=56.93 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=52.9
Q ss_pred CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCE
Q 036657 347 PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSM 422 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~ 422 (481)
..+|+.+.+..+ ++.+.. .+..+.+|+.+.+..+ +..++. |.++++|+.+.+.+ +.+..++. .+.++.+|+.
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCE
T ss_pred CccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccc-cccceehhhhhcCCCCCCE
Confidence 455666666544 444433 2455666666666543 555655 66667777776654 33444443 3556666777
Q ss_pred EeeeCCCCCccCCCCC--CCCCCcEEEe
Q 036657 423 LCFKGCESLRSFPRGI--HFVSPITIDF 448 (481)
Q Consensus 423 L~l~~c~~l~~lp~~~--~l~~L~~L~l 448 (481)
+.+. ++++.++... ++++|+.+.+
T Consensus 315 i~lp--~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 315 VTLP--TALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECC--TTCCEECTTTTTTCTTCCCCCC
T ss_pred EEcC--ccccEEHHHHhhCCCCCCEEEE
Confidence 6665 2455555432 3555555544
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.73 E-value=0.03 Score=55.57 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=50.6
Q ss_pred CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCCc----cc
Q 036657 390 LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQI----SG 462 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~~----~~ 462 (481)
+..+.+|+.+.+.+ ++..++. .+.++++|+.+++. ++++.++... ++++|+.+.+.. .++.++.. ..
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCI 366 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCT
T ss_pred cccccccccccccc--ccceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCC
Confidence 55667777777753 3555543 36778888888886 3577776543 488888888865 36676652 34
Q ss_pred ccceEeeeC
Q 036657 463 NIIELKLWY 471 (481)
Q Consensus 463 ~L~~L~L~~ 471 (481)
+|+++++..
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 677777753
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.45 E-value=0.017 Score=57.34 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=51.3
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEE
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSML 423 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L 423 (481)
...|..+.+....+.. ..+..+.+|+.+.+..+ ++.+++ |.++.+|+.+.+.. ++..++. .+.++++|+.+
T Consensus 275 ~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp CTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEE
T ss_pred ccccceeccCceeecc--ccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEE
Confidence 4455555444332211 12455666666666543 555654 66666666666653 3445532 35566666666
Q ss_pred eeeCCCCCccCCCCC--CCCCCcEEEeec
Q 036657 424 CFKGCESLRSFPRGI--HFVSPITIDFSF 450 (481)
Q Consensus 424 ~l~~c~~l~~lp~~~--~l~~L~~L~l~~ 450 (481)
.+.. +++.++... ++++|+.+.+..
T Consensus 349 ~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 349 NFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred EECc--cccEehHHHhhCCCCCCEEEECC
Confidence 6652 355555432 366666666643
No 171
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.06 E-value=0.016 Score=57.64 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=49.4
Q ss_pred CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCE
Q 036657 347 PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSM 422 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~ 422 (481)
..+|+.+.+. +.+..++.. +..+.+|+.+++..+ ++.+++ |.++.+|+.+.+.. ++..++. .|.++++|+.
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNN 361 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCE
Confidence 4566666664 345555544 566777777777653 667765 77777788777753 3555543 4677777877
Q ss_pred EeeeC
Q 036657 423 LCFKG 427 (481)
Q Consensus 423 L~l~~ 427 (481)
+++.+
T Consensus 362 i~~~~ 366 (394)
T 4gt6_A 362 IEYSG 366 (394)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 77765
No 172
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.94 E-value=0.0092 Score=49.44 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=34.4
Q ss_pred ceeeccccCC--CCCCCCCCCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCC
Q 036657 330 YLHWHEYSLK--MLPFDFEPENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQ 382 (481)
Q Consensus 330 ~L~l~~~~l~--~lP~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~ 382 (481)
.++.++..++ .+|..+ +.+|++|+|++|+|+.+|.+ +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4455566666 666543 35677777777777777665 4667777777777763
No 173
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.87 E-value=0.048 Score=53.61 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=83.0
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVE 361 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~ 361 (481)
....+|..+.+|+.+.+..+- ...-...+.... .|+.+.+..+ ++.++.. |. ..+|..+.+..+ +.
T Consensus 208 i~~~~f~~~~~l~~i~~~~~~---------~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSGV---------TTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK 275 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTTC---------CEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS
T ss_pred Eeecccccccccceeeeccce---------eEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhcccccccc-ce
Confidence 345566677777777765432 111222344444 6777766554 5556554 33 677888888653 66
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeee
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFK 426 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~ 426 (481)
.++.. +..+.+|+.+.+.++ .++.+++ |.++.+|+.+.|.. ++..++. .|.++++|+.+.+.
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 66554 677889999998876 4788876 88888999998863 4666654 36667777776664
No 174
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.76 E-value=0.081 Score=43.62 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=40.9
Q ss_pred EEEcCCCCcc--cccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 352 ELNLPYSKVE--QIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 352 ~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
.++-++++++ .+|.++. .+|++|+|++| .++.+|. |..+++|++|+|.++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 6777888888 8887643 46899999999 4888886 7888999999998753
No 175
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.81 E-value=0.79 Score=43.82 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=66.6
Q ss_pred HHHHHHHhhhCCCchhHHHHhhhhCC-CChhHHH-HHHHHHhcCCchhhHHHHHhccccCchhhHHHhhhhccCCCCCCH
Q 036657 111 ELSQEVVCYADGNPLALEVLGSSLYH-KSKQQWK-DKLNNLKLISEPSIYKVLKISYDELNSEVKEIFIDIACFFKGEDI 188 (481)
Q Consensus 111 ~i~~~iv~~c~GlPLAl~~lg~~L~~-k~~~~W~-~~l~~l~~~~~~~i~~~L~lSYd~L~~~~K~cFl~~a~Fp~~~~~ 188 (481)
+....|+..|+|.|+++..++..+.. .+...+- ...+.....-..++. .+.+ . ++..+..+..+|+ .....
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~l~~-~-~~~~~~~l~~la~--g~~~~ 298 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELE---ELRR-R-SPRYVDILRAIAL--GYNRW 298 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---HHHH-H-CHHHHHHHHHHHT--TCCSH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHH---HHHh-C-ChhHHHHHHHHHh--CCCCH
Confidence 45678999999999999999876532 2222221 111111100011111 1222 2 7888999999998 22445
Q ss_pred HHHHHHhc-----CC-CcccccHHHHhhCcceeecCCCceeh-hHHHHHH
Q 036657 189 DFMTRIHD-----DP-MSIHDGLNILVSKSLITISDENELQM-HDLLQEM 231 (481)
Q Consensus 189 ~~l~~~~~-----~~-~~~~~~~~~L~~r~li~~~~~~~~~m-Hdll~d~ 231 (481)
+.+..... -. -....+++.|+++++|... ++.+.+ |.++++.
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 299 SLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHH
Confidence 55555441 11 1345679999999999876 566665 5666654
No 176
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.00 E-value=1 Score=43.07 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=67.8
Q ss_pred HHHHhhhCCCchhHHHHhhhhCCC-ChhHHHH-HHHHHhcCCchhhHHHHH-hccc--cCchhhHHHhhhhccCCCCCCH
Q 036657 114 QEVVCYADGNPLALEVLGSSLYHK-SKQQWKD-KLNNLKLISEPSIYKVLK-ISYD--ELNSEVKEIFIDIACFFKGEDI 188 (481)
Q Consensus 114 ~~iv~~c~GlPLAl~~lg~~L~~k-~~~~W~~-~l~~l~~~~~~~i~~~L~-lSYd--~L~~~~K~cFl~~a~Fp~~~~~ 188 (481)
..|+..|+|.|+++..++..+... +...|-. ..+... ..+...+. +.++ .||+..+..+..+|+-+ ..
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g~---~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSKCG---KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCB---CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHcCC---CH
Confidence 678999999999999999876432 3333321 111111 11111111 2221 68899999999999822 55
Q ss_pred HHHHHHh---cC---C-CcccccHHHHhhCcceeecCCCcee-hhHHHHHH
Q 036657 189 DFMTRIH---DD---P-MSIHDGLNILVSKSLITISDENELQ-MHDLLQEM 231 (481)
Q Consensus 189 ~~l~~~~---~~---~-~~~~~~~~~L~~r~li~~~~~~~~~-mHdll~d~ 231 (481)
+.+.... .+ . -....+++.|+++++|... .+.++ .|.++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHh
Confidence 5554322 12 1 1345679999999999877 46666 56777764
No 177
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=74.84 E-value=2.3 Score=33.69 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=31.0
Q ss_pred HhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeE
Q 036657 6 AIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPV 48 (481)
Q Consensus 6 ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pv 48 (481)
.|+.|.+.||..+++-++|.||-.|+ ++.++.|+.++-|
T Consensus 35 ~I~~~~~vIvL~G~~t~~s~wv~~EI----~~A~~~gkpIigV 73 (111)
T 1eiw_A 35 TPEDADAVIVLAGLWGTRRDEILGAV----DLARKSSKPIITV 73 (111)
T ss_dssp CSSSCSEEEEEGGGTTTSHHHHHHHH----HHHTTTTCCEEEE
T ss_pred ccccCCEEEEEeCCCcCCChHHHHHH----HHHHHcCCCEEEE
Confidence 57889999999999999999999996 3455567666655
No 178
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=68.71 E-value=2.1 Score=37.82 Aligned_cols=12 Identities=8% Similarity=0.348 Sum_probs=5.2
Q ss_pred CceEEEcCCCCc
Q 036657 349 NLIELNLPYSKV 360 (481)
Q Consensus 349 ~L~~L~L~~~~i 360 (481)
.|+.|+|++|.+
T Consensus 71 ~L~~L~L~~n~i 82 (197)
T 1pgv_A 71 HIEKFSLANTAI 82 (197)
T ss_dssp CCCEEECTTSCC
T ss_pred CcCEEEccCCCC
Confidence 344444444443
No 179
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=66.48 E-value=3.3 Score=36.44 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=17.6
Q ss_pred cccceeeccccCCCC-----CCCCC-CCCceEEEcCCCCcc
Q 036657 327 ELRYLHWHEYSLKML-----PFDFE-PENLIELNLPYSKVE 361 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~l-----P~~~~-l~~L~~L~L~~~~i~ 361 (481)
.|+.|++++|.+..- -..+. -..|++|+|++|.|.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 566777776665421 11111 244566666665554
No 180
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=54.20 E-value=12 Score=36.37 Aligned_cols=101 Identities=12% Similarity=-0.016 Sum_probs=57.8
Q ss_pred HHHHHHHhhhC------CCchhHHHHhhh-h-----CCC---ChhHHHHHHHHHhcCCchhhHHHHHhccccCchhhHHH
Q 036657 111 ELSQEVVCYAD------GNPLALEVLGSS-L-----YHK---SKQQWKDKLNNLKLISEPSIYKVLKISYDELNSEVKEI 175 (481)
Q Consensus 111 ~i~~~iv~~c~------GlPLAl~~lg~~-L-----~~k---~~~~W~~~l~~l~~~~~~~i~~~L~lSYd~L~~~~K~c 175 (481)
+....|+++|+ |.|..+..+... . .+. +.+.+..++..... ...+.-+++.||.+.+.+
T Consensus 240 ~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~ 313 (412)
T 1w5s_A 240 RHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELII 313 (412)
T ss_dssp HHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHH
Confidence 45677888888 999765554432 1 111 34445444443210 234566788999999999
Q ss_pred hhhhccCCC----CCCHHHHHH--------HhcCC-C---cccccHHHHhhCcceeec
Q 036657 176 FIDIACFFK----GEDIDFMTR--------IHDDP-M---SIHDGLNILVSKSLITIS 217 (481)
Q Consensus 176 Fl~~a~Fp~----~~~~~~l~~--------~~~~~-~---~~~~~~~~L~~r~li~~~ 217 (481)
+..+|.++. .+....+.. ..... . ....+++.|++.++|...
T Consensus 314 l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 314 LRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 999997642 133333221 11111 1 124568999999999875
No 181
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=54.19 E-value=11 Score=32.50 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=43.8
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecC-CcccccccCcHHH
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVD-PSDVRKQRGTFEK 66 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~-p~~v~~q~g~~~~ 66 (481)
.|-+.|..|+..|+++|++...|.|=..|+..-+ ...|..|+-|.=+-+ -+++.+-.|+|..
T Consensus 72 rLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai---~~~~~PII~Vy~~~~~~~~i~~~~g~~~~ 134 (189)
T 3hyn_A 72 RLHTRLDNSKNIILFLSSITANSRALREEMNYGI---GTKGLPVIVIYPDYDKKSDIVDSNGNFKK 134 (189)
T ss_dssp HHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHT---TTTCCCEEEEETTCCSGGGTBCTTSCBCH
T ss_pred HHHHHHHhcCcEEEEEecCccccchhHHHHHHHH---HhcCCcEEEEECCccccchhhhccccchh
Confidence 3567899999999999999999999877765544 256777887764422 3355554555443
No 182
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=33.67 E-value=18 Score=27.69 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=12.6
Q ss_pred ChHHHHhhhCCEEEEEEcCCCcc
Q 036657 1 PAISNAIETSDISIIIFSKDYAS 23 (481)
Q Consensus 1 ~~~~~ai~~s~~~ivv~s~~ya~ 23 (481)
|+.+.++..+..++||||..|--
T Consensus 42 ~~emg~lsG~~rsLvvFSsgYrP 64 (102)
T 2pp6_A 42 LAELGPVEGNGKNVVVFSGNVIP 64 (102)
T ss_dssp TC--------CEEEEECCSSCCC
T ss_pred HHHhCCccCCceEEEEecCCccc
Confidence 35577889999999999999964
No 183
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=32.84 E-value=8.4 Score=28.90 Aligned_cols=37 Identities=19% Similarity=0.573 Sum_probs=25.4
Q ss_pred CcchhhHHHHHHHHHHhHh-hCC---CeEEeEEeecCCccc
Q 036657 21 YASSKWCLNELVKILDCKK-MNG---QIVIPVFYQVDPSDV 57 (481)
Q Consensus 21 ya~s~~cl~el~~i~~~~~-~~~---~~v~pvfy~v~p~~v 57 (481)
|+...---||...|+-|++ .-| .+|+|.-|+.....+
T Consensus 37 yvytaqtedeietiitcrrylagnnllrvlpmhfkfkadki 77 (135)
T 3dt5_A 37 YVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKI 77 (135)
T ss_dssp SCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECC
T ss_pred HheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchh
Confidence 5555556799999999976 233 368888777654433
No 184
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.49 E-value=65 Score=24.46 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=18.4
Q ss_pred ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
+.++.+|+.+.+..+ ++.+.+ |.++.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 444555555555543 445544 55555555555554
No 185
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=24.42 E-value=18 Score=26.32 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=19.1
Q ss_pred hCCEEEEEEcCCCcchhhHHHHHHHHHHh
Q 036657 9 TSDISIIIFSKDYASSKWCLNELVKILDC 37 (481)
Q Consensus 9 ~s~~~ivv~s~~ya~s~~cl~el~~i~~~ 37 (481)
++.|++||||++---..||=..+.+|++.
T Consensus 39 daeV~livfs~~gk~~~~~s~~~~~il~r 67 (77)
T 1egw_A 39 DCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (77)
T ss_dssp TCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred CCeEEEEEECCCCCEeeCCCCCHHHHHHH
Confidence 78999999999833333333345566664
No 186
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=22.04 E-value=31 Score=27.65 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=29.5
Q ss_pred eecCCcccccccCcHHHHHHHHHhcCc-hhhhhHHHHHHHhhccC
Q 036657 50 YQVDPSDVRKQRGTFEKAFVHHENNFP-DKVQKWRDVLTEASNFS 93 (481)
Q Consensus 50 y~v~p~~v~~q~g~~~~~~~~~~~~~~-~~v~~w~~al~~~~~~~ 93 (481)
|+|+|.+..--...+-.+++++...+. |....|.+++..+++..
T Consensus 84 ~gV~p~~f~~~~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~a~~l 128 (134)
T 1tu9_A 84 LDIRPELYDLWLDALLMAVAEHDRDCDAETRDAWRDVMGRGIAVI 128 (134)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 468887776544455556656444455 66778999998887654
No 187
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=21.48 E-value=1.1e+02 Score=25.31 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=27.4
Q ss_pred CEEEEEEcCCCcc-hhhHH---HHHHHHHHhHhhCCCeEEeEEeecCCc
Q 036657 11 DISIIIFSKDYAS-SKWCL---NELVKILDCKKMNGQIVIPVFYQVDPS 55 (481)
Q Consensus 11 ~~~ivv~s~~ya~-s~~cl---~el~~i~~~~~~~~~~v~pvfy~v~p~ 55 (481)
++.||.|- |+. ..||- .+|.++.+..+..|..|..||-.|||.
T Consensus 33 k~vll~F~--~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 33 KVWVADFM--FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp SCEEEEEE--CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CEEEEEEE--CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 56666663 332 24784 555555555455677788999999984
No 188
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=20.05 E-value=34 Score=28.03 Aligned_cols=43 Identities=7% Similarity=0.019 Sum_probs=31.4
Q ss_pred eecCCcccccccCcHHHHHHHHHhcCc-hhhhhHHHHHHHhhccC
Q 036657 50 YQVDPSDVRKQRGTFEKAFVHHENNFP-DKVQKWRDVLTEASNFS 93 (481)
Q Consensus 50 y~v~p~~v~~q~g~~~~~~~~~~~~~~-~~v~~w~~al~~~~~~~ 93 (481)
|+|+|.+...-...+-.++.++ ..+. +....|.+++..+++..
T Consensus 93 ~~V~p~~f~~~~~~Ll~~l~~~-~~~t~e~~~AW~~~~~~v~~~l 136 (147)
T 2nrl_A 93 HKIPINNFKLISEVLVKVMQEK-AGLDAGGQTALRNVMGIIIADL 136 (147)
T ss_dssp TCCCTHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHH
Confidence 5688888776555666677777 5555 67778999998887754
Done!