BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036659
         (300 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
           Spinach
 pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
           Complexed With Tentoxin
          Length = 507

 Score = 32.0 bits (71), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 213 FVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSN---- 268
           F EL+  F  F +DL+K    N L    RL + L + Q+APL VEE        +N    
Sbjct: 390 FAELEA-FAQFASDLDK-ATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLD 447

Query: 269 ----DEIRK 273
               D++RK
Sbjct: 448 SLELDQVRK 456


>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
          Length = 239

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSWQTLFGKNVFD 103
           +FD    +    KEI+ CI +   G HA+L          +EE  A       FG+    
Sbjct: 88  IFDTEVPNAETSKEIIRCILLTSPGPHALL-LVVPLGRYTEEEHKATEKILKXFGERARS 146

Query: 104 YMIVVF 109
           + I++F
Sbjct: 147 FXILIF 152


>pdb|4G0H|A Chain A, Crystal Structure Of The N-Terminal Domain Of Helicobacter
           Pylori Caga Protein
          Length = 916

 Score = 28.5 bits (62), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 262 LAQMKSN---DEIRKLRENLERAQRETEELRKRAEK 294
           +A+ KS    DE++K +++LE++ R+ E L K  EK
Sbjct: 600 VAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEK 635


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,624,184
Number of Sequences: 62578
Number of extensions: 270223
Number of successful extensions: 706
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 24
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)