Query 036659
Match_columns 300
No_of_seqs 228 out of 715
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 4.8E-46 1E-50 328.5 12.4 174 10-221 33-206 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 3.9E-39 8.5E-44 278.0 17.7 165 9-213 32-196 (196)
3 TIGR00993 3a0901s04IAP86 chlor 99.9 8.1E-22 1.8E-26 203.0 11.8 127 12-176 152-287 (763)
4 TIGR00991 3a0901s02IAP34 GTP-b 99.8 1E-18 2.2E-23 166.6 13.7 105 22-136 81-186 (313)
5 cd01853 Toc34_like Toc34-like 99.3 3.4E-12 7.3E-17 117.5 8.3 99 11-119 64-166 (249)
6 PRK00089 era GTPase Era; Revie 97.9 0.00012 2.7E-09 67.2 11.7 132 25-213 51-182 (292)
7 cd04164 trmE TrmE (MnmE, ThdF, 97.6 0.0012 2.7E-08 52.5 11.7 79 22-117 44-122 (157)
8 cd01894 EngA1 EngA1 subfamily. 97.6 0.00031 6.7E-09 56.2 8.1 91 11-117 30-120 (157)
9 cd04163 Era Era subfamily. Er 97.4 0.0017 3.6E-08 51.5 10.1 87 24-126 48-134 (168)
10 cd01895 EngA2 EngA2 subfamily. 97.3 0.007 1.5E-07 48.7 12.7 84 22-117 45-128 (174)
11 cd01879 FeoB Ferrous iron tran 97.3 0.0091 2E-07 48.0 12.8 88 11-116 28-115 (158)
12 PF01926 MMR_HSR1: 50S ribosom 97.2 0.0015 3.2E-08 51.7 7.1 84 11-110 32-115 (116)
13 TIGR03594 GTPase_EngA ribosome 97.2 0.0027 5.8E-08 61.3 10.0 91 10-116 31-121 (429)
14 PRK00093 GTP-binding protein D 97.2 0.0025 5.5E-08 61.8 9.9 90 10-115 33-122 (435)
15 cd00880 Era_like Era (E. coli 97.0 0.017 3.6E-07 44.8 11.1 82 26-125 44-125 (163)
16 TIGR00436 era GTP-binding prot 96.9 0.018 4E-07 52.9 12.3 130 25-214 46-176 (270)
17 TIGR03598 GTPase_YsxC ribosome 96.8 0.017 3.7E-07 49.1 11.0 78 27-117 64-144 (179)
18 cd01876 YihA_EngB The YihA (En 96.7 0.047 1E-06 43.5 11.7 76 28-117 46-125 (170)
19 cd01881 Obg_like The Obg-like 96.6 0.03 6.4E-07 45.8 10.5 95 11-117 28-135 (176)
20 PRK00454 engB GTP-binding prot 96.6 0.066 1.4E-06 45.2 12.8 79 26-117 69-150 (196)
21 PRK15494 era GTPase Era; Provi 96.5 0.04 8.6E-07 53.0 12.3 78 22-114 95-172 (339)
22 cd04166 CysN_ATPS CysN_ATPS su 96.4 0.023 4.9E-07 50.1 9.0 73 22-116 72-144 (208)
23 cd01897 NOG NOG1 is a nucleola 96.4 0.072 1.6E-06 43.6 11.4 91 13-117 34-128 (168)
24 cd00882 Ras_like_GTPase Ras-li 96.2 0.034 7.5E-07 42.1 8.2 74 26-117 44-117 (157)
25 TIGR03594 GTPase_EngA ribosome 96.2 0.15 3.2E-06 49.3 14.3 91 22-126 215-306 (429)
26 cd01884 EF_Tu EF-Tu subfamily. 96.1 0.059 1.3E-06 47.9 10.3 72 23-116 61-132 (195)
27 COG1159 Era GTPase [General fu 96.1 0.071 1.5E-06 51.7 11.4 135 24-215 51-185 (298)
28 PRK00093 GTP-binding protein D 96.0 0.16 3.5E-06 49.4 13.4 77 23-115 217-297 (435)
29 COG5019 CDC3 Septin family pro 96.0 0.77 1.7E-05 46.0 18.1 80 28-117 83-177 (373)
30 cd04104 p47_IIGP_like p47 (47- 95.9 0.038 8.3E-07 48.3 7.8 72 26-117 51-122 (197)
31 PRK12299 obgE GTPase CgtA; Rev 95.9 0.34 7.5E-06 46.9 15.0 83 22-115 200-284 (335)
32 PF02421 FeoB_N: Ferrous iron 95.8 0.027 5.8E-07 49.4 6.7 93 9-119 30-122 (156)
33 cd04171 SelB SelB subfamily. 95.8 0.22 4.8E-06 40.1 11.4 71 23-115 46-117 (164)
34 smart00053 DYNc Dynamin, GTPas 95.8 0.11 2.3E-06 48.5 10.7 90 26-128 124-217 (240)
35 PF00350 Dynamin_N: Dynamin fa 95.5 0.02 4.3E-07 47.5 4.2 67 26-110 100-166 (168)
36 cd01888 eIF2_gamma eIF2-gamma 95.3 0.2 4.3E-06 44.0 10.4 69 26-116 82-151 (203)
37 PRK09518 bifunctional cytidyla 95.3 0.071 1.5E-06 56.1 8.7 91 10-116 307-397 (712)
38 cd01887 IF2_eIF5B IF2/eIF5B (i 95.2 0.26 5.7E-06 40.0 10.1 67 26-115 49-115 (168)
39 PRK10512 selenocysteinyl-tRNA- 95.1 0.18 3.9E-06 52.7 11.0 70 25-116 49-118 (614)
40 PRK03003 GTP-binding protein D 94.9 0.1 2.2E-06 52.1 8.3 89 10-114 70-158 (472)
41 PRK12298 obgE GTPase CgtA; Rev 94.9 0.78 1.7E-05 45.5 14.1 132 26-214 206-345 (390)
42 cd04165 GTPBP1_like GTPBP1-lik 94.9 0.77 1.7E-05 41.7 13.1 74 23-117 80-153 (224)
43 cd01850 CDC_Septin CDC/Septin. 94.8 0.23 5.1E-06 46.5 9.8 80 24-117 58-158 (276)
44 COG1160 Predicted GTPases [Gen 94.7 0.22 4.7E-06 50.8 9.8 91 10-115 35-125 (444)
45 PRK12736 elongation factor Tu; 94.7 0.27 5.9E-06 48.1 10.2 70 24-115 72-141 (394)
46 cd01898 Obg Obg subfamily. Th 94.6 1.3 2.7E-05 36.2 12.5 82 23-116 43-128 (170)
47 cd00154 Rab Rab family. Rab G 94.5 0.96 2.1E-05 35.5 11.1 69 26-115 48-118 (159)
48 cd01889 SelB_euk SelB subfamil 94.4 0.36 7.8E-06 41.5 9.2 68 26-116 67-134 (192)
49 PF00009 GTP_EFTU: Elongation 94.3 0.49 1.1E-05 40.7 9.8 69 24-115 67-135 (188)
50 TIGR02729 Obg_CgtA Obg family 94.2 1.5 3.2E-05 42.4 13.9 83 23-116 200-287 (329)
51 PRK05291 trmE tRNA modificatio 94.0 3 6.5E-05 41.9 16.2 76 22-115 258-334 (449)
52 cd01891 TypA_BipA TypA (tyrosi 94.0 1.6 3.5E-05 37.5 12.5 72 22-116 60-131 (194)
53 PRK09554 feoB ferrous iron tra 94.0 1.7 3.6E-05 47.0 15.1 93 10-117 34-127 (772)
54 TIGR00485 EF-Tu translation el 93.7 0.4 8.6E-06 46.8 9.1 71 24-116 72-142 (394)
55 cd04169 RF3 RF3 subfamily. Pe 93.5 0.69 1.5E-05 43.2 10.1 51 22-90 66-116 (267)
56 PRK03003 GTP-binding protein D 93.3 4.2 9.1E-05 40.8 15.9 79 22-115 254-335 (472)
57 PLN03127 Elongation factor Tu; 93.2 0.5 1.1E-05 47.5 9.2 71 24-116 121-191 (447)
58 cd04168 TetM_like Tet(M)-like 93.2 1.5 3.3E-05 40.1 11.6 71 22-115 59-129 (237)
59 PRK00741 prfC peptide chain re 93.1 0.58 1.3E-05 48.1 9.5 112 22-177 74-192 (526)
60 cd00881 GTP_translation_factor 93.1 0.48 1E-05 39.0 7.4 71 23-116 58-128 (189)
61 smart00175 RAB Rab subfamily o 92.8 4.3 9.3E-05 32.7 12.5 73 22-115 42-118 (164)
62 PRK09866 hypothetical protein; 92.5 14 0.00031 40.1 19.1 85 27-127 230-317 (741)
63 cd01886 EF-G Elongation factor 92.5 1.3 2.9E-05 41.4 10.4 55 22-94 59-113 (270)
64 PRK12735 elongation factor Tu; 92.5 0.49 1.1E-05 46.3 7.9 71 24-116 72-142 (396)
65 KOG2655 Septin family protein 92.3 8.5 0.00019 38.6 16.2 62 28-93 80-155 (366)
66 PRK12296 obgE GTPase CgtA; Rev 92.3 4.3 9.3E-05 42.0 14.5 47 22-79 201-247 (500)
67 TIGR00475 selB selenocysteine- 92.1 2 4.4E-05 44.6 12.1 72 23-116 46-117 (581)
68 TIGR00450 mnmE_trmE_thdF tRNA 92.0 0.64 1.4E-05 46.7 8.2 85 12-114 237-322 (442)
69 PRK00049 elongation factor Tu; 92.0 0.55 1.2E-05 46.1 7.5 71 24-116 72-142 (396)
70 PRK12297 obgE GTPase CgtA; Rev 92.0 3.1 6.8E-05 41.9 12.9 80 26-117 205-288 (424)
71 TIGR00437 feoB ferrous iron tr 91.9 2.4 5.1E-05 44.3 12.3 89 11-117 26-114 (591)
72 TIGR02034 CysN sulfate adenyly 91.7 0.61 1.3E-05 45.9 7.5 83 11-116 65-147 (406)
73 TIGR03680 eif2g_arch translati 91.7 1.4 3E-05 43.4 9.9 69 26-116 79-148 (406)
74 cd04121 Rab40 Rab40 subfamily. 91.6 7.7 0.00017 34.1 13.6 75 22-117 48-124 (189)
75 cd04127 Rab27A Rab27a subfamil 91.5 5.1 0.00011 33.3 11.8 68 27-115 63-133 (180)
76 cd04142 RRP22 RRP22 subfamily. 91.4 3.5 7.6E-05 36.3 11.2 51 21-81 41-93 (198)
77 CHL00071 tufA elongation facto 91.2 0.69 1.5E-05 45.5 7.4 71 24-116 72-142 (409)
78 cd04144 Ras2 Ras2 subfamily. 91.2 4.1 8.8E-05 34.9 11.2 74 23-114 41-118 (190)
79 cd01861 Rab6 Rab6 subfamily. 91.2 5.7 0.00012 32.1 11.5 73 24-116 44-119 (161)
80 TIGR00503 prfC peptide chain r 90.7 1.3 2.8E-05 45.6 8.9 52 22-91 75-126 (527)
81 cd01890 LepA LepA subfamily. 90.4 1.1 2.5E-05 37.0 6.9 66 26-114 66-131 (179)
82 PRK09518 bifunctional cytidyla 90.4 13 0.00028 39.6 16.1 81 22-116 493-575 (712)
83 PRK13768 GTPase; Provisional 90.3 2.1 4.5E-05 39.6 9.2 82 26-117 96-177 (253)
84 cd04106 Rab23_lke Rab23-like s 90.3 8 0.00017 31.2 11.6 49 66-117 72-121 (162)
85 PRK04000 translation initiatio 90.3 3.5 7.5E-05 40.9 11.2 70 26-117 84-154 (411)
86 PRK15467 ethanolamine utilizat 90.2 2 4.4E-05 36.3 8.4 63 31-114 41-103 (158)
87 PRK05124 cysN sulfate adenylyl 90.1 1.2 2.7E-05 45.0 8.1 72 23-116 103-174 (474)
88 PRK05506 bifunctional sulfate 89.6 1.2 2.5E-05 46.4 7.6 73 22-116 99-171 (632)
89 PF00735 Septin: Septin; Inte 89.5 1.2 2.5E-05 42.3 7.0 76 28-117 64-157 (281)
90 cd04112 Rab26 Rab26 subfamily. 89.4 6.6 0.00014 33.6 11.0 35 164-204 132-166 (191)
91 PRK12739 elongation factor G; 89.2 2.3 4.9E-05 44.9 9.5 72 21-115 67-138 (691)
92 PRK12317 elongation factor 1-a 89.1 1.2 2.7E-05 43.6 7.1 83 10-115 68-152 (425)
93 PRK00007 elongation factor G; 89.0 2.5 5.5E-05 44.6 9.7 73 21-116 69-141 (693)
94 cd01896 DRG The developmentall 88.5 2.4 5.3E-05 38.5 8.1 75 12-100 33-107 (233)
95 cd04113 Rab4 Rab4 subfamily. 88.4 7 0.00015 31.7 10.0 48 67-116 71-119 (161)
96 PLN00223 ADP-ribosylation fact 88.3 14 0.0003 31.8 12.2 76 22-117 56-132 (181)
97 TIGR00484 EF-G translation elo 88.2 3.4 7.3E-05 43.6 10.0 81 11-115 60-140 (689)
98 cd01883 EF1_alpha Eukaryotic e 87.9 2.7 5.9E-05 37.4 7.9 72 22-115 72-150 (219)
99 PF09726 Macoilin: Transmembra 87.8 3.4 7.3E-05 44.4 9.8 45 237-281 502-564 (697)
100 smart00174 RHO Rho (Ras homolo 87.3 7.7 0.00017 31.9 9.8 74 22-116 39-116 (174)
101 cd04119 RJL RJL (RabJ-Like) su 87.3 14 0.0003 29.7 11.5 71 27-115 49-123 (168)
102 cd01878 HflX HflX subfamily. 87.2 5 0.00011 34.5 8.9 83 24-117 85-168 (204)
103 TIGR00064 ftsY signal recognit 87.1 3.3 7.1E-05 39.0 8.3 76 25-117 153-232 (272)
104 cd04118 Rab24 Rab24 subfamily. 87.1 13 0.00028 31.5 11.2 46 67-115 72-118 (193)
105 cd04170 EF-G_bact Elongation f 87.0 2.4 5.2E-05 38.8 7.2 119 22-177 59-177 (268)
106 PLN03126 Elongation factor Tu; 87.0 4.2 9.2E-05 41.5 9.6 71 24-116 141-211 (478)
107 PTZ00327 eukaryotic translatio 86.7 5.7 0.00012 40.5 10.3 68 26-115 116-184 (460)
108 cd04110 Rab35 Rab35 subfamily. 86.6 20 0.00044 31.0 12.5 15 67-81 77-91 (199)
109 TIGR02528 EutP ethanolamine ut 86.5 4.8 0.0001 32.2 7.9 43 65-115 59-101 (142)
110 cd04123 Rab21 Rab21 subfamily. 86.2 15 0.00033 29.2 11.1 47 67-115 71-118 (162)
111 cd04136 Rap_like Rap-like subf 86.2 13 0.00027 30.0 10.3 48 66-114 70-118 (163)
112 cd00876 Ras Ras family. The R 86.2 8.2 0.00018 30.7 9.1 76 22-116 40-118 (160)
113 cd04148 RGK RGK subfamily. Th 86.2 12 0.00026 33.4 11.1 73 22-114 43-118 (221)
114 cd04122 Rab14 Rab14 subfamily. 86.1 18 0.00038 29.8 12.6 16 66-81 72-87 (166)
115 COG1160 Predicted GTPases [Gen 86.1 21 0.00047 36.7 14.0 93 21-127 220-314 (444)
116 PF07946 DUF1682: Protein of u 86.1 9.7 0.00021 36.8 11.1 34 186-219 230-263 (321)
117 cd04161 Arl2l1_Arl13_like Arl2 85.7 15 0.00032 30.8 10.7 85 22-127 38-123 (167)
118 cd01882 BMS1 Bms1. Bms1 is an 85.6 4.5 9.7E-05 36.5 8.1 68 25-117 81-148 (225)
119 cd01860 Rab5_related Rab5-rela 85.6 17 0.00038 29.3 11.9 14 66-79 71-84 (163)
120 cd04140 ARHI_like ARHI subfami 85.6 11 0.00025 31.0 9.9 71 26-114 48-120 (165)
121 cd01863 Rab18 Rab18 subfamily. 85.4 15 0.00033 29.6 10.4 36 27-80 49-84 (161)
122 cd04109 Rab28 Rab28 subfamily. 85.3 17 0.00037 31.9 11.5 49 66-114 71-121 (215)
123 PRK10416 signal recognition pa 85.1 3.7 8.1E-05 39.6 7.7 77 24-117 194-274 (318)
124 cd04108 Rab36_Rab34 Rab34/Rab3 85.0 20 0.00044 30.2 11.4 46 66-113 70-117 (170)
125 cd04125 RabA_like RabA-like su 84.9 17 0.00036 30.8 10.8 49 66-116 70-119 (188)
126 PTZ00133 ADP-ribosylation fact 84.4 25 0.00055 30.1 12.3 74 22-116 56-131 (182)
127 COG0218 Predicted GTPase [Gene 84.4 31 0.00067 32.1 13.0 78 29-117 72-150 (200)
128 PRK13351 elongation factor G; 84.3 8.2 0.00018 40.5 10.4 72 22-116 68-139 (687)
129 cd04158 ARD1 ARD1 subfamily. 84.3 23 0.0005 29.5 11.8 76 22-117 38-114 (169)
130 PRK12740 elongation factor G; 84.1 8 0.00017 40.4 10.2 72 22-116 55-126 (668)
131 cd04162 Arl9_Arfrp2_like Arl9/ 84.0 23 0.0005 29.6 11.2 42 23-82 40-81 (164)
132 TIGR01394 TypA_BipA GTP-bindin 83.7 7.9 0.00017 40.6 9.9 70 22-114 59-128 (594)
133 cd04167 Snu114p Snu114p subfam 83.6 9.5 0.00021 33.6 9.1 67 26-115 70-136 (213)
134 cd04145 M_R_Ras_like M-Ras/R-R 83.6 16 0.00035 29.4 9.8 41 23-81 44-86 (164)
135 KOG1191 Mitochondrial GTPase [ 83.5 3.3 7.2E-05 43.2 6.9 83 2-95 293-375 (531)
136 cd01871 Rac1_like Rac1-like su 83.0 16 0.00035 31.0 10.0 16 65-80 69-84 (174)
137 TIGR00483 EF-1_alpha translati 82.4 3.3 7.1E-05 40.8 6.2 73 22-115 80-154 (426)
138 PRK12724 flagellar biosynthesi 82.3 10 0.00022 38.9 9.7 102 25-145 298-402 (432)
139 cd04146 RERG_RasL11_like RERG/ 82.3 24 0.00051 28.9 10.4 43 22-81 40-84 (165)
140 PLN03118 Rab family protein; P 82.2 29 0.00063 30.2 11.5 43 23-83 56-100 (211)
141 PF00448 SRP54: SRP54-type pro 82.2 4 8.7E-05 36.6 6.3 75 25-118 82-156 (196)
142 cd04111 Rab39 Rab39 subfamily. 81.6 37 0.0008 30.0 12.6 15 67-81 74-88 (211)
143 cd04153 Arl5_Arl8 Arl5/Arl8 su 81.2 13 0.00029 31.2 8.7 73 22-114 54-128 (174)
144 PRK05306 infB translation init 81.2 7 0.00015 42.6 8.7 80 11-114 322-401 (787)
145 TIGR03156 GTP_HflX GTP-binding 81.1 6.9 0.00015 38.2 7.9 80 25-115 235-314 (351)
146 cd01864 Rab19 Rab19 subfamily. 81.1 24 0.00053 28.8 10.1 41 22-80 45-87 (165)
147 cd01893 Miro1 Miro1 subfamily. 80.9 30 0.00066 28.5 11.2 72 25-116 45-117 (166)
148 cd01885 EF2 EF2 (for archaea a 80.6 11 0.00023 34.5 8.6 67 26-115 72-138 (222)
149 cd04154 Arl2 Arl2 subfamily. 80.5 8.5 0.00018 32.1 7.3 75 22-116 53-129 (173)
150 cd04101 RabL4 RabL4 (Rab-like4 80.4 29 0.00064 28.1 12.3 69 26-115 51-120 (164)
151 COG1084 Predicted GTPase [Gene 80.2 9.2 0.0002 38.2 8.4 91 23-127 211-306 (346)
152 cd01865 Rab3 Rab3 subfamily. 79.7 33 0.00071 28.2 12.5 15 66-80 71-85 (165)
153 cd00877 Ran Ran (Ras-related n 79.7 35 0.00076 28.5 11.8 67 26-113 48-115 (166)
154 COG0370 FeoB Fe2+ transport sy 79.7 67 0.0015 34.8 15.0 139 11-211 35-173 (653)
155 cd04138 H_N_K_Ras_like H-Ras/N 79.5 29 0.00064 27.5 10.6 48 68-116 72-120 (162)
156 cd04157 Arl6 Arl6 subfamily. 79.3 9.8 0.00021 30.6 7.1 72 24-115 42-117 (162)
157 PRK11058 GTPase HflX; Provisio 79.1 13 0.00028 37.5 9.2 82 23-115 240-322 (426)
158 cd04105 SR_beta Signal recogni 79.1 14 0.00031 32.5 8.6 72 26-115 47-122 (203)
159 cd04137 RheB Rheb (Ras Homolog 79.0 36 0.00078 28.3 10.8 16 65-80 69-84 (180)
160 cd04175 Rap1 Rap1 subgroup. T 78.9 30 0.00066 28.1 10.0 16 66-81 70-85 (164)
161 PRK05433 GTP-binding protein L 78.7 37 0.00079 35.8 12.7 66 26-114 73-138 (600)
162 cd04160 Arfrp1 Arfrp1 subfamil 78.6 24 0.00052 28.7 9.3 74 22-115 45-120 (167)
163 KOG1547 Septin CDC10 and relat 78.3 22 0.00048 34.9 10.1 62 10-78 82-165 (336)
164 cd00157 Rho Rho (Ras homology) 78.2 8.5 0.00018 31.3 6.5 70 27-117 48-119 (171)
165 PTZ00099 rab6; Provisional 78.1 28 0.00062 30.1 10.0 15 67-81 51-65 (176)
166 cd00879 Sar1 Sar1 subfamily. 77.9 13 0.00029 31.2 7.8 86 22-127 58-146 (190)
167 KOG4466 Component of histone d 77.7 21 0.00046 34.9 9.8 86 208-293 35-136 (291)
168 PRK04213 GTP-binding protein; 77.6 21 0.00045 30.5 9.0 45 28-79 53-101 (201)
169 cd04115 Rab33B_Rab33A Rab33B/R 77.6 18 0.00039 30.0 8.3 44 23-83 45-90 (170)
170 cd04151 Arl1 Arl1 subfamily. 77.4 13 0.00028 30.3 7.3 73 23-115 39-113 (158)
171 PTZ00141 elongation factor 1- 77.4 7.5 0.00016 39.1 7.1 69 23-113 81-156 (446)
172 cd04147 Ras_dva Ras-dva subfam 77.2 11 0.00023 32.7 7.1 76 22-116 40-118 (198)
173 cd03115 SRP The signal recogni 76.6 23 0.0005 29.8 8.9 77 24-119 80-156 (173)
174 cd01868 Rab11_like Rab11-like. 76.6 39 0.00085 27.4 10.7 45 67-114 74-120 (165)
175 cd04155 Arl3 Arl3 subfamily. 76.2 42 0.0009 27.5 11.0 83 22-126 53-137 (173)
176 PF08581 Tup_N: Tup N-terminal 75.4 12 0.00026 29.8 6.3 23 259-281 54-76 (79)
177 PTZ00416 elongation factor 2; 75.3 10 0.00022 41.2 7.9 67 26-115 91-157 (836)
178 cd04124 RabL2 RabL2 subfamily. 75.2 45 0.00098 27.4 11.7 45 66-113 70-115 (161)
179 COG1217 TypA Predicted membran 75.1 5.2 0.00011 42.0 5.3 82 21-110 62-166 (603)
180 PRK10218 GTP-binding protein; 75.0 13 0.00029 39.2 8.4 53 22-92 63-115 (607)
181 cd04141 Rit_Rin_Ric Rit/Rin/Ri 75.0 50 0.0011 27.9 11.9 49 22-88 43-93 (172)
182 cd00878 Arf_Arl Arf (ADP-ribos 74.7 42 0.00092 27.0 9.6 76 22-117 38-115 (158)
183 cd04159 Arl10_like Arl10-like 74.5 38 0.00082 26.5 9.0 75 23-117 40-116 (159)
184 cd04132 Rho4_like Rho4-like su 74.5 40 0.00086 28.2 9.7 46 66-114 70-117 (187)
185 cd04156 ARLTS1 ARLTS1 subfamil 73.9 45 0.00098 26.8 10.7 69 26-114 43-113 (160)
186 cd03110 Fer4_NifH_child This p 73.9 31 0.00067 29.2 9.0 78 25-128 91-169 (179)
187 PRK07560 elongation factor EF- 73.6 13 0.00028 39.6 8.0 68 25-115 85-152 (731)
188 PRK11889 flhF flagellar biosyn 73.1 25 0.00055 36.2 9.5 73 26-117 320-392 (436)
189 PRK12726 flagellar biosynthesi 72.3 14 0.00031 37.6 7.5 74 25-117 284-357 (407)
190 cd01866 Rab2 Rab2 subfamily. 72.2 20 0.00043 29.7 7.3 36 27-80 53-88 (168)
191 TIGR01425 SRP54_euk signal rec 71.2 19 0.00041 36.7 8.2 73 25-116 181-253 (429)
192 KOG0393 Ras-related small GTPa 71.1 6.6 0.00014 36.2 4.5 62 43-115 56-122 (198)
193 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 71.0 56 0.0012 26.6 13.1 14 67-80 73-86 (166)
194 KOG0462 Elongation factor-type 70.7 6.2 0.00013 42.0 4.7 79 8-102 104-210 (650)
195 cd04152 Arl4_Arl7 Arl4/Arl7 su 70.2 68 0.0015 27.3 11.4 72 25-115 50-122 (183)
196 PRK00771 signal recognition pa 70.2 18 0.00039 36.8 7.8 71 26-115 175-245 (437)
197 TIGR01393 lepA GTP-binding pro 70.0 57 0.0012 34.3 11.6 66 27-116 70-135 (595)
198 TIGR00490 aEF-2 translation el 70.0 11 0.00024 40.1 6.5 70 23-115 82-151 (720)
199 cd04143 Rhes_like Rhes_like su 69.9 92 0.002 28.7 11.9 45 23-85 42-88 (247)
200 cd04139 RalA_RalB RalA/RalB su 69.8 55 0.0012 26.1 11.2 70 27-116 48-119 (164)
201 cd04130 Wrch_1 Wrch-1 subfamil 69.0 18 0.00039 30.1 6.4 72 23-115 42-117 (173)
202 smart00177 ARF ARF-like small 68.7 29 0.00063 29.3 7.7 75 22-117 52-128 (175)
203 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 68.5 29 0.00062 31.6 8.1 18 64-81 68-85 (222)
204 smart00178 SAR Sar1p-like memb 68.4 61 0.0013 27.6 9.7 72 22-113 56-129 (184)
205 cd01867 Rab8_Rab10_Rab13_like 68.4 66 0.0014 26.5 12.9 46 67-115 74-121 (167)
206 COG3596 Predicted GTPase [Gene 68.3 16 0.00034 35.9 6.6 81 23-117 83-163 (296)
207 CHL00189 infB translation init 68.0 18 0.00038 39.4 7.6 69 25-116 293-361 (742)
208 PLN03110 Rab GTPase; Provision 67.9 87 0.0019 27.7 12.2 15 66-80 82-96 (216)
209 cd04149 Arf6 Arf6 subfamily. 67.9 42 0.0009 28.2 8.4 71 23-113 49-121 (168)
210 KOG1029 Endocytic adaptor prot 67.7 34 0.00074 38.1 9.5 22 265-286 385-406 (1118)
211 cd04134 Rho3 Rho3 subfamily. 67.7 78 0.0017 27.0 11.9 43 24-84 43-87 (189)
212 PRK09563 rbgA GTPase YlqF; Rev 67.0 8.9 0.00019 35.9 4.6 40 10-60 153-192 (287)
213 PF09744 Jnk-SapK_ap_N: JNK_SA 66.2 97 0.0021 27.6 10.9 49 238-286 58-106 (158)
214 cd04135 Tc10 TC10 subfamily. 65.6 39 0.00084 27.7 7.7 48 65-115 68-117 (174)
215 PLN00043 elongation factor 1-a 65.4 24 0.00051 35.7 7.5 72 23-115 81-158 (447)
216 KOG1029 Endocytic adaptor prot 65.2 47 0.001 37.1 9.9 10 27-36 137-146 (1118)
217 PF15236 CCDC66: Coiled-coil d 65.1 1.1E+02 0.0023 27.6 11.5 22 238-259 95-116 (157)
218 COG1341 Predicted GTPase or GT 65.0 26 0.00057 35.7 7.6 16 28-46 173-188 (398)
219 PF05529 Bap31: B-cell recepto 64.7 39 0.00084 29.9 7.9 31 263-293 155-185 (192)
220 PRK06731 flhF flagellar biosyn 63.9 57 0.0012 31.0 9.4 73 26-117 154-226 (270)
221 COG0480 FusA Translation elong 63.9 9.6 0.00021 41.1 4.6 47 21-85 69-116 (697)
222 PRK14722 flhF flagellar biosyn 62.7 48 0.001 33.2 9.0 90 24-128 213-306 (374)
223 COG2433 Uncharacterized conser 62.3 60 0.0013 35.0 9.9 61 231-292 444-504 (652)
224 KOG2357 Uncharacterized conser 61.9 64 0.0014 33.3 9.7 64 185-256 337-400 (440)
225 KOG4403 Cell surface glycoprot 61.8 53 0.0012 34.3 9.2 18 269-286 309-326 (575)
226 KOG0395 Ras-related GTPase [Ge 61.5 21 0.00045 32.1 5.7 49 68-117 74-122 (196)
227 TIGR01069 mutS2 MutS2 family p 61.4 85 0.0018 34.3 11.1 43 71-115 404-447 (771)
228 TIGR00487 IF-2 translation ini 61.3 51 0.0011 34.7 9.2 70 23-115 130-200 (587)
229 KOG0464 Elongation factor G [T 61.2 4.9 0.00011 41.9 1.8 33 22-69 97-129 (753)
230 PRK14845 translation initiatio 61.2 30 0.00066 39.1 8.0 46 65-115 546-591 (1049)
231 TIGR00491 aIF-2 translation in 60.0 30 0.00065 36.5 7.3 65 28-115 70-134 (590)
232 COG1100 GTPase SAR1 and relate 59.9 67 0.0015 27.5 8.4 55 62-118 71-126 (219)
233 smart00173 RAS Ras subfamily o 59.7 92 0.002 25.1 11.0 75 22-115 41-118 (164)
234 KOG2129 Uncharacterized conser 59.6 1.2E+02 0.0026 31.7 11.2 45 234-285 256-301 (552)
235 TIGR00231 small_GTP small GTP- 59.5 46 0.001 25.4 6.7 13 23-35 44-58 (161)
236 KOG0163 Myosin class VI heavy 59.5 93 0.002 34.9 10.9 10 105-114 753-762 (1259)
237 PHA02518 ParA-like protein; Pr 59.2 1.1E+02 0.0025 26.0 10.9 82 25-128 75-159 (211)
238 smart00275 G_alpha G protein a 59.0 1.1E+02 0.0024 29.8 10.6 49 66-115 205-264 (342)
239 PRK00409 recombination and DNA 58.8 97 0.0021 33.8 11.0 41 71-113 409-450 (782)
240 PRK14974 cell division protein 58.5 40 0.00087 33.1 7.5 73 25-116 221-293 (336)
241 cd04150 Arf1_5_like Arf1-Arf5- 57.7 73 0.0016 26.4 8.0 74 23-117 40-115 (159)
242 PTZ00369 Ras-like protein; Pro 56.9 1.1E+02 0.0024 26.1 9.2 18 66-83 74-91 (189)
243 KOG0448 Mitofusin 1 GTPase, in 56.8 3.1E+02 0.0068 30.3 14.3 69 28-117 207-276 (749)
244 cd04126 Rab20 Rab20 subfamily. 55.8 51 0.0011 29.9 7.3 70 24-113 41-111 (220)
245 PRK09435 membrane ATPase/prote 55.3 2.2E+02 0.0047 28.1 13.2 64 24-117 146-209 (332)
246 cd04117 Rab15 Rab15 subfamily. 54.5 69 0.0015 26.4 7.3 15 67-81 71-85 (161)
247 PRK00409 recombination and DNA 54.5 1.7E+02 0.0037 32.0 12.0 24 81-109 390-413 (782)
248 KOG0813 Glyoxylase [General fu 53.4 17 0.00037 35.0 4.0 31 9-39 89-119 (265)
249 cd00066 G-alpha G protein alph 53.2 2.1E+02 0.0046 27.4 12.3 75 23-116 157-242 (317)
250 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 52.8 82 0.0018 27.3 7.8 50 64-117 72-123 (182)
251 cd01851 GBP Guanylate-binding 52.3 41 0.0009 30.5 6.1 57 26-96 59-117 (224)
252 cd01875 RhoG RhoG subfamily. 52.0 1E+02 0.0022 26.5 8.2 21 65-85 71-91 (191)
253 TIGR01069 mutS2 MutS2 family p 51.8 1.1E+02 0.0023 33.5 10.0 23 254-276 568-590 (771)
254 cd04120 Rab12 Rab12 subfamily. 51.8 1.1E+02 0.0024 27.3 8.6 48 66-116 70-118 (202)
255 PRK12723 flagellar biosynthesi 51.7 74 0.0016 32.0 8.2 85 24-127 252-336 (388)
256 KOG3915 Transcription regulato 51.6 67 0.0014 33.9 8.0 20 238-257 543-562 (641)
257 PF12808 Mto2_bdg: Micro-tubul 51.4 39 0.00085 25.2 4.7 45 238-282 5-49 (52)
258 cd04176 Rap2 Rap2 subgroup. T 51.3 1.1E+02 0.0023 24.8 7.9 74 22-114 42-118 (163)
259 PF00503 G-alpha: G-protein al 51.3 20 0.00044 34.9 4.2 75 23-116 231-317 (389)
260 PF04536 TPM: TLP18.3, Psb32 a 51.3 1.2E+02 0.0026 23.8 8.1 43 82-128 2-44 (119)
261 PRK05703 flhF flagellar biosyn 51.2 1.3E+02 0.0027 30.5 9.8 85 25-128 298-382 (424)
262 KOG2412 Nuclear-export-signal 50.9 3E+02 0.0066 29.6 12.6 25 268-292 250-274 (591)
263 KOG0994 Extracellular matrix g 50.9 2E+02 0.0042 34.0 11.8 13 281-293 1687-1699(1758)
264 cd04107 Rab32_Rab38 Rab38/Rab3 50.8 1.6E+02 0.0035 25.3 12.2 18 66-83 71-88 (201)
265 cd04116 Rab9 Rab9 subfamily. 50.7 1.1E+02 0.0024 25.0 7.9 15 67-81 76-90 (170)
266 cd04177 RSR1 RSR1 subgroup. R 50.2 40 0.00087 27.8 5.3 47 67-114 71-118 (168)
267 PRK04004 translation initiatio 49.4 62 0.0013 34.0 7.6 44 67-115 93-136 (586)
268 PLN00116 translation elongatio 49.3 83 0.0018 34.5 8.7 68 25-115 96-163 (843)
269 PLN03071 GTP-binding nuclear p 49.3 1.9E+02 0.0042 25.7 12.0 41 27-85 62-102 (219)
270 cd01862 Rab7 Rab7 subfamily. 49.3 1.4E+02 0.003 24.1 13.6 15 67-81 71-85 (172)
271 PF09726 Macoilin: Transmembra 49.3 1.1E+02 0.0024 33.1 9.6 23 238-260 489-511 (697)
272 cd04128 Spg1 Spg1p. Spg1p (se 48.6 85 0.0018 27.0 7.2 50 64-115 68-117 (182)
273 PRK10867 signal recognition pa 47.7 97 0.0021 31.6 8.5 72 25-115 182-253 (433)
274 PRK14723 flhF flagellar biosyn 47.3 80 0.0017 34.7 8.2 86 25-128 262-348 (767)
275 cd01874 Cdc42 Cdc42 subfamily. 46.6 1.4E+02 0.0029 25.4 8.1 47 22-86 42-90 (175)
276 cd03111 CpaE_like This protein 46.1 92 0.002 24.7 6.5 39 70-109 66-104 (106)
277 KOG2077 JNK/SAPK-associated pr 44.7 1.4E+02 0.003 32.6 9.1 34 259-292 347-380 (832)
278 COG0486 ThdF Predicted GTPase 44.0 1E+02 0.0023 32.0 8.1 88 13-117 251-338 (454)
279 PRK12727 flagellar biosynthesi 43.9 97 0.0021 33.0 8.0 72 25-116 427-498 (559)
280 cd01900 YchF YchF subfamily. 43.7 46 0.001 31.7 5.2 40 28-78 63-102 (274)
281 cd01870 RhoA_like RhoA-like su 42.6 1.9E+02 0.0041 23.7 10.3 73 23-115 43-118 (175)
282 PF05600 DUF773: Protein of un 41.7 3.6E+02 0.0079 28.2 11.6 53 240-293 439-491 (507)
283 TIGR03348 VI_IcmF type VI secr 41.4 62 0.0013 36.7 6.5 92 23-128 157-265 (1169)
284 smart00176 RAN Ran (Ras-relate 41.4 1.1E+02 0.0024 27.2 7.0 43 26-86 43-85 (200)
285 TIGR00959 ffh signal recogniti 41.2 96 0.0021 31.6 7.3 71 25-114 181-251 (428)
286 cd01983 Fer4_NifH The Fer4_Nif 41.2 79 0.0017 22.6 5.1 13 67-79 57-69 (99)
287 COG2452 Predicted site-specifi 40.6 2.8E+02 0.0062 25.9 9.5 108 48-202 65-172 (193)
288 cd04114 Rab30 Rab30 subfamily. 40.6 2E+02 0.0043 23.3 11.9 40 23-80 50-91 (169)
289 PF15035 Rootletin: Ciliary ro 40.3 1.6E+02 0.0035 26.7 7.9 9 238-246 31-39 (182)
290 cd04131 Rnd Rnd subfamily. Th 40.3 1.5E+02 0.0033 25.4 7.5 21 65-85 69-89 (178)
291 PF12925 APP_E2: E2 domain of 40.1 1.9E+02 0.0042 26.8 8.4 69 210-282 25-94 (193)
292 COG3276 SelB Selenocysteine-sp 39.3 1.2E+02 0.0027 31.5 7.7 69 27-117 50-118 (447)
293 cd01873 RhoBTB RhoBTB subfamil 38.9 1.3E+02 0.0028 26.5 6.9 22 65-86 84-105 (195)
294 PHA02571 a-gt.4 hypothetical p 37.6 93 0.002 26.6 5.5 30 253-282 28-57 (109)
295 PF00071 Ras: Ras family; Int 37.4 1.8E+02 0.0038 23.4 7.1 47 66-115 69-117 (162)
296 PF15346 ARGLU: Arginine and g 36.0 3.2E+02 0.0069 24.4 9.1 9 209-217 30-38 (149)
297 PF06409 NPIP: Nuclear pore co 35.5 2.5E+02 0.0054 27.3 8.6 27 269-299 155-182 (265)
298 KOG0804 Cytoplasmic Zn-finger 35.5 3.8E+02 0.0083 28.2 10.5 28 57-84 227-256 (493)
299 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 35.5 1.5E+02 0.0032 27.3 7.0 21 65-85 81-101 (232)
300 PF06200 tify: tify domain; I 35.3 39 0.00084 23.4 2.4 24 166-195 10-33 (36)
301 PRK01558 V-type ATP synthase s 35.2 3.2E+02 0.0069 24.6 9.0 15 187-201 3-17 (198)
302 KOG1490 GTP-binding protein CR 35.1 42 0.00091 35.8 3.7 77 27-115 215-294 (620)
303 PF01656 CbiA: CobQ/CobB/MinD/ 34.9 31 0.00068 28.8 2.3 44 68-113 116-159 (195)
304 TIGR00157 ribosome small subun 34.2 39 0.00086 31.1 3.1 9 30-38 174-182 (245)
305 cd04133 Rop_like Rop subfamily 33.6 2.1E+02 0.0045 24.8 7.3 21 66-86 70-90 (176)
306 PF10458 Val_tRNA-synt_C: Valy 33.4 2.1E+02 0.0045 21.4 6.5 43 238-280 19-64 (66)
307 PF03962 Mnd1: Mnd1 family; I 33.2 3.6E+02 0.0078 24.4 9.0 6 166-171 48-53 (188)
308 PF13974 YebO: YebO-like prote 32.9 1.1E+02 0.0024 24.8 5.0 34 261-294 19-52 (80)
309 PF09731 Mitofilin: Mitochondr 32.8 4.8E+02 0.01 26.9 10.9 22 187-208 223-244 (582)
310 KOG0163 Myosin class VI heavy 32.5 3.9E+02 0.0084 30.4 10.4 14 64-77 657-670 (1259)
311 COG1149 MinD superfamily P-loo 32.5 3.2E+02 0.0069 26.9 8.9 65 68-144 185-249 (284)
312 PLN02559 chalcone--flavonone i 32.3 52 0.0011 31.3 3.5 34 78-112 120-154 (230)
313 cd01899 Ygr210 Ygr210 subfamil 32.3 1.6E+02 0.0034 28.6 6.9 42 27-79 69-110 (318)
314 KOG2357 Uncharacterized conser 31.8 1.6E+02 0.0035 30.5 7.1 11 69-79 222-232 (440)
315 cd02042 ParA ParA and ParB of 31.6 1.8E+02 0.0038 22.2 5.9 17 69-86 62-78 (104)
316 KOG0458 Elongation factor 1 al 31.6 1.4E+02 0.003 32.2 6.8 89 8-117 237-330 (603)
317 PF08657 DASH_Spc34: DASH comp 30.9 3.6E+02 0.0077 25.9 8.9 32 224-257 182-213 (259)
318 PF00091 Tubulin: Tubulin/FtsZ 30.6 1.4E+02 0.0031 26.7 6.0 85 56-178 112-197 (216)
319 PF10828 DUF2570: Protein of u 30.5 3E+02 0.0065 22.6 7.4 40 238-277 47-86 (110)
320 PF07026 DUF1317: Protein of u 30.2 14 0.00029 28.5 -0.5 25 131-158 5-29 (60)
321 PRK02224 chromosome segregatio 30.0 7.2E+02 0.016 26.8 12.0 20 88-107 113-134 (880)
322 TIGR03018 pepcterm_TyrKin exop 29.9 1.2E+02 0.0027 26.6 5.4 17 69-86 172-188 (207)
323 cd02040 NifH NifH gene encodes 29.8 2.4E+02 0.0052 25.2 7.3 10 26-35 116-125 (270)
324 PRK06800 fliH flagellar assemb 29.8 4.4E+02 0.0094 25.0 9.0 23 260-282 78-100 (228)
325 PRK12289 GTPase RsgA; Reviewed 29.8 44 0.00096 33.0 2.8 9 30-38 227-235 (352)
326 PLN02804 chalcone isomerase 29.7 58 0.0013 30.3 3.4 32 81-112 116-148 (206)
327 cd04129 Rho2 Rho2 subfamily. 29.5 2.3E+02 0.0051 24.0 6.9 44 67-113 71-116 (187)
328 PF05701 WEMBL: Weak chloropla 29.4 6.2E+02 0.013 26.3 11.0 63 230-292 172-234 (522)
329 PRK10884 SH3 domain-containing 29.2 3.8E+02 0.0081 24.8 8.5 13 272-284 142-154 (206)
330 cd04824 eu_ALAD_PBGS_cysteine_ 29.1 2.2E+02 0.0048 28.5 7.3 66 28-98 26-106 (320)
331 PRK09601 GTP-binding protein Y 29.0 1.1E+02 0.0025 30.5 5.5 40 28-78 67-106 (364)
332 PRK13729 conjugal transfer pil 28.9 2E+02 0.0043 30.2 7.3 19 231-249 70-88 (475)
333 PF15437 PGBA_C: Plasminogen-b 28.6 2.2E+02 0.0048 23.4 6.1 41 253-293 42-82 (86)
334 cd04102 RabL3 RabL3 (Rab-like3 28.6 1.2E+02 0.0025 27.2 5.0 24 63-86 72-95 (202)
335 PTZ00258 GTP-binding protein; 28.5 91 0.002 31.4 4.8 42 27-79 85-126 (390)
336 COG5256 TEF1 Translation elong 28.5 1.8E+02 0.004 30.1 6.9 74 23-117 81-160 (428)
337 PLN02676 polyamine oxidase 28.3 1.6E+02 0.0035 29.9 6.5 38 65-103 354-399 (487)
338 cd07680 F-BAR_PACSIN1 The F-BA 28.2 5.1E+02 0.011 24.8 9.5 21 267-287 166-186 (258)
339 PTZ00335 tubulin alpha chain; 28.1 1.3E+02 0.0029 30.6 5.9 45 66-111 129-174 (448)
340 TIGR03596 GTPase_YlqF ribosome 28.1 63 0.0014 30.1 3.4 39 10-59 150-188 (276)
341 PF05060 MGAT2: N-acetylglucos 27.7 1.2E+02 0.0027 30.4 5.5 69 70-148 31-99 (356)
342 PF07795 DUF1635: Protein of u 27.6 3.5E+02 0.0075 25.6 8.0 34 260-293 24-57 (214)
343 KOG1962 B-cell receptor-associ 27.5 5.4E+02 0.012 24.4 10.1 13 92-104 35-47 (216)
344 KOG2077 JNK/SAPK-associated pr 26.8 2.1E+02 0.0046 31.2 7.1 17 266-282 361-377 (832)
345 PF01496 V_ATPase_I: V-type AT 26.7 2.7E+02 0.0059 29.9 8.1 35 260-294 252-286 (759)
346 PF15272 BBP1_C: Spindle pole 26.6 4.2E+02 0.0092 24.7 8.3 42 238-279 108-149 (196)
347 PF15236 CCDC66: Coiled-coil d 26.0 4.9E+02 0.011 23.5 10.3 29 260-288 96-124 (157)
348 PLN00220 tubulin beta chain; P 26.0 2.1E+02 0.0045 29.1 6.8 46 66-112 127-173 (447)
349 PRK01005 V-type ATP synthase s 26.0 5.3E+02 0.011 23.8 9.3 11 187-197 8-18 (207)
350 KOG0447 Dynamin-like GTP bindi 25.9 1.2E+02 0.0026 33.2 5.2 81 27-117 412-494 (980)
351 PRK14721 flhF flagellar biosyn 25.7 3.9E+02 0.0086 27.3 8.7 85 24-128 267-351 (420)
352 PF00249 Myb_DNA-binding: Myb- 25.7 69 0.0015 22.1 2.4 23 80-102 2-24 (48)
353 TIGR00570 cdk7 CDK-activating 25.6 6.8E+02 0.015 24.9 11.1 98 177-278 83-183 (309)
354 CHL00123 rps6 ribosomal protei 25.4 1.2E+02 0.0026 24.5 4.1 30 172-206 11-40 (97)
355 cd00959 DeoC 2-deoxyribose-5-p 25.4 2E+02 0.0044 25.6 5.9 56 27-95 54-109 (203)
356 KOG1144 Translation initiation 25.3 2.3E+02 0.005 32.0 7.2 18 263-280 253-270 (1064)
357 PF06941 NT5C: 5' nucleotidase 25.2 2.2E+02 0.0049 24.6 6.1 64 43-112 67-131 (191)
358 KOG4661 Hsp27-ERE-TATA-binding 25.2 4.2E+02 0.0092 29.1 9.0 23 92-114 463-485 (940)
359 TIGR02644 Y_phosphoryl pyrimid 25.1 2.1E+02 0.0046 29.2 6.7 51 67-117 189-242 (405)
360 KOG3850 Predicted membrane pro 25.0 4.2E+02 0.0092 27.5 8.6 55 189-247 262-316 (455)
361 KOG4364 Chromatin assembly fac 24.8 4.4E+02 0.0095 29.3 9.1 26 36-62 150-175 (811)
362 PF09798 LCD1: DNA damage chec 24.7 1.8E+02 0.0039 31.6 6.4 42 238-282 5-46 (654)
363 TIGR03029 EpsG chain length de 24.7 1.1E+02 0.0023 28.0 4.1 22 68-90 235-256 (274)
364 COG4108 PrfC Peptide chain rel 24.6 1.8E+02 0.004 30.7 6.1 113 23-179 77-196 (528)
365 cd00550 ArsA_ATPase Oxyanion-t 24.6 3.6E+02 0.0078 24.8 7.6 44 64-111 155-198 (254)
366 KOG1265 Phospholipase C [Lipid 24.4 6.1E+02 0.013 29.3 10.2 14 186-199 1036-1049(1189)
367 TIGR03371 cellulose_yhjQ cellu 24.2 1.7E+02 0.0037 25.7 5.2 9 27-35 115-123 (246)
368 PF05670 DUF814: Domain of unk 24.0 1.7E+02 0.0037 23.0 4.7 49 65-115 38-88 (90)
369 PRK09123 amidophosphoribosyltr 23.9 1.4E+02 0.003 30.8 5.2 68 24-103 358-436 (479)
370 PRK09602 translation-associate 23.9 1.4E+02 0.003 29.9 5.1 42 27-79 72-113 (396)
371 PRK13428 F0F1 ATP synthase sub 23.8 6.9E+02 0.015 25.5 10.0 6 275-280 103-108 (445)
372 cd04103 Centaurin_gamma Centau 23.6 3E+02 0.0064 23.0 6.4 48 67-116 64-112 (158)
373 PF10498 IFT57: Intra-flagella 23.5 7.6E+02 0.016 24.8 11.8 101 177-285 213-317 (359)
374 PF09727 CortBP2: Cortactin-bi 23.4 4.4E+02 0.0095 24.5 7.8 25 233-257 136-161 (192)
375 cd01859 MJ1464 MJ1464. This f 23.3 4.2E+02 0.0091 21.7 8.0 43 68-115 12-54 (156)
376 COG1162 Predicted GTPases [Gen 23.2 1.1E+02 0.0023 30.2 4.1 22 30-56 219-241 (301)
377 PF03460 NIR_SIR_ferr: Nitrite 23.1 66 0.0014 23.5 2.0 35 68-103 8-42 (69)
378 PF14988 DUF4515: Domain of un 23.0 6E+02 0.013 23.4 10.9 49 238-286 48-102 (206)
379 PF12999 PRKCSH-like: Glucosid 22.9 3.3E+02 0.0072 24.9 6.8 23 260-282 151-173 (176)
380 KOG2891 Surface glycoprotein [ 22.9 3.4E+02 0.0073 27.3 7.3 13 162-174 245-257 (445)
381 smart00148 PLCXc Phospholipase 22.6 2.4E+02 0.0053 23.8 5.6 59 42-104 61-121 (135)
382 PRK05729 valS valyl-tRNA synth 22.4 2.5E+02 0.0053 30.9 7.0 42 238-279 826-870 (874)
383 PRK10302 hypothetical protein; 22.4 4.6E+02 0.01 25.2 8.1 14 169-182 227-240 (272)
384 smart00864 Tubulin Tubulin/Fts 22.4 2E+02 0.0043 25.4 5.2 38 70-110 84-122 (192)
385 PF06785 UPF0242: Uncharacteri 22.3 7.9E+02 0.017 25.2 9.8 20 187-206 68-87 (401)
386 KOG0977 Nuclear envelope prote 22.3 5.1E+02 0.011 27.7 8.9 17 231-247 242-259 (546)
387 cd02186 alpha_tubulin The tubu 22.2 2.1E+02 0.0044 29.0 5.9 46 66-112 128-174 (434)
388 PF08477 Miro: Miro-like prote 22.2 1.1E+02 0.0024 23.4 3.3 46 68-113 73-119 (119)
389 KOG0971 Microtubule-associated 22.1 1.3E+03 0.028 26.9 13.1 102 183-293 227-328 (1243)
390 PF09744 Jnk-SapK_ap_N: JNK_SA 22.1 5.7E+02 0.012 22.8 8.4 21 261-281 134-154 (158)
391 KOG1954 Endocytosis/signaling 22.0 57 0.0012 33.9 2.0 72 28-117 148-226 (532)
392 PF02318 FYVE_2: FYVE-type zin 22.0 2E+02 0.0043 23.8 4.9 28 254-281 12-39 (118)
393 PF10481 CENP-F_N: Cenp-F N-te 21.9 8E+02 0.017 24.4 9.9 23 264-286 111-133 (307)
394 KOG3915 Transcription regulato 21.8 3.6E+02 0.0078 28.8 7.6 16 191-206 467-482 (641)
395 cd04823 ALAD_PBGS_aspartate_ri 21.8 3.8E+02 0.0082 26.8 7.5 67 27-98 28-108 (320)
396 cd02038 FleN-like FleN is a me 21.7 4.6E+02 0.01 21.6 7.1 40 70-113 68-108 (139)
397 cd02187 beta_tubulin The tubul 21.6 2.9E+02 0.0062 27.9 6.8 47 65-112 125-172 (425)
398 smart00879 Brix Brix domain. T 21.5 2.7E+02 0.0059 23.4 5.8 79 27-113 64-150 (180)
399 KOG0461 Selenocysteine-specifi 21.5 4.7E+02 0.01 27.3 8.2 58 166-223 120-191 (522)
400 cd02036 MinD Bacterial cell di 21.5 2.9E+02 0.0064 22.7 5.9 40 70-114 86-126 (179)
401 cd07655 F-BAR_PACSIN The F-BAR 21.4 6.7E+02 0.015 23.4 11.0 16 269-284 168-183 (258)
402 cd01857 HSR1_MMR1 HSR1/MMR1. 21.3 1.3E+02 0.0027 24.7 3.6 46 68-116 11-56 (141)
403 PF08829 AlphaC_N: Alpha C pro 21.3 3.5E+02 0.0075 25.2 6.6 55 192-246 125-184 (194)
404 PRK14475 F0F1 ATP synthase sub 21.2 5.5E+02 0.012 22.3 10.7 10 188-197 11-20 (167)
405 TIGR02858 spore_III_AA stage I 21.1 4.8E+02 0.01 24.8 7.9 109 22-179 142-259 (270)
406 PF04201 TPD52: Tumour protein 20.9 1.8E+02 0.0038 26.5 4.6 26 266-291 40-65 (162)
407 cd02189 delta_tubulin The tubu 20.8 3.1E+02 0.0066 27.9 6.8 44 66-110 123-167 (446)
408 PF14197 Cep57_CLD_2: Centroso 20.6 4.1E+02 0.0088 20.6 8.2 35 254-289 33-67 (69)
409 cd08599 PI-PLCc_plant Catalyti 20.6 3.5E+02 0.0077 25.5 6.8 53 45-101 66-119 (228)
410 TIGR01039 atpD ATP synthase, F 20.6 3.2E+02 0.0069 28.5 7.0 66 43-115 147-213 (461)
411 KOG0804 Cytoplasmic Zn-finger 20.6 1E+03 0.022 25.2 10.5 22 258-279 424-445 (493)
412 KOG0243 Kinesin-like protein [ 20.6 1.3E+03 0.027 26.9 11.9 47 234-281 494-540 (1041)
413 PF12718 Tropomyosin_1: Tropom 20.5 5.6E+02 0.012 22.1 9.9 46 238-284 50-95 (143)
414 cd02639 R3H_RRM R3H domain of 20.4 1.3E+02 0.0028 22.7 3.2 35 64-100 10-44 (60)
415 KOG2891 Surface glycoprotein [ 20.4 9E+02 0.019 24.4 11.5 29 265-293 410-438 (445)
416 cd01135 V_A-ATPase_B V/A-type 20.3 3.3E+02 0.0072 26.4 6.6 69 43-115 73-142 (276)
417 KOG0964 Structural maintenance 20.2 8E+02 0.017 28.6 10.2 100 169-283 379-495 (1200)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=4.8e-46 Score=328.52 Aligned_cols=174 Identities=33% Similarity=0.535 Sum_probs=153.7
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.++|..|+..+ ..++|+.|+||||| ||||+..+.+.+.++|.+|+.++.|||||||||++++ |||.+|+.+
T Consensus 33 ~~~t~~~~~~~-~~~~g~~v~VIDTP-------Gl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~ 103 (212)
T PF04548_consen 33 KSVTQECQKYS-GEVDGRQVTVIDTP-------GLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREV 103 (212)
T ss_dssp SS--SS-EEEE-EEETTEEEEEEE---------SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHH
T ss_pred CCcccccceee-eeecceEEEEEeCC-------CCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHH
Confidence 78999999985 68999999999999 9999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD 169 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~ 169 (300)
++.++++||+++|+|+|||||++|.+.+. ++++|+.+++|..|++ |+++|+
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~---------------------------li~~c~ 154 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQE---------------------------LIEKCG 154 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHH---------------------------HHHHTT
T ss_pred HHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhH---------------------------HhhhcC
Confidence 99999999999999999999999999984 6999999656788999 999999
Q ss_pred CeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhh
Q 036659 170 NRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFL 221 (300)
Q Consensus 170 ~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~ 221 (300)
+|||+|||++.+..++..||.+||++|+.|+.+|||.|||+++|+++++..+
T Consensus 155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~ 206 (212)
T PF04548_consen 155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE 206 (212)
T ss_dssp TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 9999999996666677899999999999999999999999999999997554
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=3.9e-39 Score=278.01 Aligned_cols=165 Identities=41% Similarity=0.637 Sum_probs=154.0
Q ss_pred CCCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659 9 RFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA 88 (300)
Q Consensus 9 ~~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~ 88 (300)
..++|..|+... ..++|+.++||||| |++|+..+.+.+.++|.+|+.++.||||+||+|++++ +||++|..
T Consensus 32 ~~~~T~~~~~~~-~~~~~~~i~viDTP-------G~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~-~~t~~d~~ 102 (196)
T cd01852 32 ASSVTKTCQKES-AVWDGRRVNVIDTP-------GLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLG-RFTEEEEQ 102 (196)
T ss_pred CCCcccccceee-EEECCeEEEEEECc-------CCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECC-CcCHHHHH
Confidence 368999999885 67899999999999 9999888888999999999999999999999999998 69999999
Q ss_pred HHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhc
Q 036659 89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLC 168 (300)
Q Consensus 89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C 168 (300)
+++.++++||+++++|+|||||++|++.+ .++++|+.. .+..|+. ++++|
T Consensus 103 ~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~---------------------------l~~~c 152 (196)
T cd01852 103 AVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKR---------------------------LLEKC 152 (196)
T ss_pred HHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHH---------------------------HHHHh
Confidence 99999999999999999999999999987 499999988 5688999 99999
Q ss_pred CCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHH
Q 036659 169 DNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIF 213 (300)
Q Consensus 169 ~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f 213 (300)
++|||+|||+.+ .+++..||.+||++|++|+.+|+|.||+++||
T Consensus 153 ~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 153 GGRYVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred CCeEEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999999986 55678999999999999999999999999886
No 3
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.86 E-value=8.1e-22 Score=203.00 Aligned_cols=127 Identities=14% Similarity=0.136 Sum_probs=104.8
Q ss_pred CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhh--ccCCCCCeEEEEEEeCCCCCC--HHHH
Q 036659 12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCI--GMAKDGIHAVLVVFSVRSRFS--QEEE 87 (300)
Q Consensus 12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci--~l~~pGpHA~LLV~~v~~rfT--~EE~ 87 (300)
.|+.|... ...++|+.|+||||| ||||+..+. ....+|.+|+ .++.+|||+||+|++++ +++ .+|.
T Consensus 152 ~TTr~~ei-~~~idG~~L~VIDTP-------GL~dt~~dq-~~neeILk~Ik~~Lsk~gpDVVLlV~RLd-~~~~D~eD~ 221 (763)
T TIGR00993 152 GTTSVQEI-EGLVQGVKIRVIDTP-------GLKSSASDQ-SKNEKILSSVKKFIKKNPPDIVLYVDRLD-MQTRDSNDL 221 (763)
T ss_pred CceEEEEE-EEEECCceEEEEECC-------CCCccccch-HHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CccccHHHH
Confidence 34444333 246899999999999 999986543 3456666666 45678999999999997 444 3788
Q ss_pred HHHHHHHHHhchhhhcceEEEEEcCCCCCCC-----cccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccch
Q 036659 88 AALHSWQTLFGKNVFDYMIVVFTGGDELEDN-----DETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRR 162 (300)
Q Consensus 88 ~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~-----~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (300)
.+++.|+++||+++|+||||||||+|.+..+ +.|+++|+.. |+..||+
T Consensus 222 ~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq~-------------------------- 274 (763)
T TIGR00993 222 PLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQQ-------------------------- 274 (763)
T ss_pred HHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHHH--------------------------
Confidence 9999999999999999999999999999732 2699999988 8999999
Q ss_pred hhhhhcCCeEEEEe
Q 036659 163 GILQLCDNRCVLFD 176 (300)
Q Consensus 163 ~Ll~~C~~R~~~Fn 176 (300)
+|..|.||+++||
T Consensus 275 -~Irq~~g~~~l~n 287 (763)
T TIGR00993 275 -AIGQAVGDLRLMN 287 (763)
T ss_pred -HHHHhcCcceecc
Confidence 9999999999999
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.79 E-value=1e-18 Score=166.64 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=91.0
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHHhchh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~-~rfT~EE~~al~~lq~lFG~~ 100 (300)
..++|+.++||||| ||+|.....+.. .++.+|.. ..+|||+||+|.+++ .|+++.|+.+++.++.+||++
T Consensus 81 ~~~~G~~l~VIDTP-------GL~d~~~~~e~~-~~~ik~~l-~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~ 151 (313)
T TIGR00991 81 RTRAGFTLNIIDTP-------GLIEGGYINDQA-VNIIKRFL-LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD 151 (313)
T ss_pred EEECCeEEEEEECC-------CCCchHHHHHHH-HHHHHHHh-hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh
Confidence 35799999999999 999976544444 57778874 467999999999876 399999999999999999999
Q ss_pred hhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccc
Q 036659 101 VFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKS 136 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~ 136 (300)
+|+||||||||+|.+..++.++++|+.+ ++..|++
T Consensus 152 iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 152 IWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred hhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 9999999999999886666899999988 7888988
No 5
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.33 E-value=3.4e-12 Score=117.48 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCC---hHHHHHHHHHhhccCCCCCeEEEEEEeCCC-CCCHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAG---SKFVGKEIVTCIGMAKDGIHAVLVVFSVRS-RFSQEE 86 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~---~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~-rfT~EE 86 (300)
+.|..|+.. ...++|+.++||||| ||.|+..+ .+.+...|.+++ ...++|++|+|.+++. |++..|
T Consensus 64 ~~T~~~~~~-~~~~~g~~i~vIDTP-------Gl~~~~~~~~~~~~~~~~I~~~l--~~~~idvIL~V~rlD~~r~~~~d 133 (249)
T cd01853 64 SETLRVREV-SGTVDGFKLNIIDTP-------GLLESVMDQRVNRKILSSIKRYL--KKKTPDVVLYVDRLDMYRRDYLD 133 (249)
T ss_pred CceEEEEEE-EEEECCeEEEEEECC-------CcCcchhhHHHHHHHHHHHHHHH--hccCCCEEEEEEcCCCCCCCHHH
Confidence 567777665 357899999999999 98877432 233444555554 3568999999999874 899999
Q ss_pred HHHHHHHHHHhchhhhcceEEEEEcCCCCCCCc
Q 036659 87 EAALHSWQTLFGKNVFDYMIVVFTGGDELEDND 119 (300)
Q Consensus 87 ~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~ 119 (300)
..+++.|+..||.++|+|+||||||.|.+..++
T Consensus 134 ~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 134 LPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 999999999999999999999999999886543
No 6
>PRK00089 era GTPase Era; Reviewed
Probab=97.93 E-value=0.00012 Score=67.18 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=84.4
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+++|||| |+++.. ....+.+.....-+.++.|++|+|+.+...++..+...++.+.. .-..
T Consensus 51 ~~~qi~~iDTP-------G~~~~~---~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-----~~~p 115 (292)
T PRK00089 51 DDAQIIFVDTP-------GIHKPK---RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK-----VKTP 115 (292)
T ss_pred CCceEEEEECC-------CCCCch---hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh-----cCCC
Confidence 45799999999 888754 33445555555556679999999999986689888877777662 2356
Q ss_pred eEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchhh
Q 036659 105 MIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAK 184 (300)
Q Consensus 105 ~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~~ 184 (300)
.|+|+|.-|.+.+. ..+.+.+.. +.+ ... ...++.++.++
T Consensus 116 vilVlNKiDl~~~~-~~l~~~~~~-----l~~---------------------------~~~--~~~i~~iSA~~----- 155 (292)
T PRK00089 116 VILVLNKIDLVKDK-EELLPLLEE-----LSE---------------------------LMD--FAEIVPISALK----- 155 (292)
T ss_pred EEEEEECCcCCCCH-HHHHHHHHH-----HHh---------------------------hCC--CCeEEEecCCC-----
Confidence 88899988876332 233333322 111 111 12344444443
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCCChHHH
Q 036659 185 RTEQIWKLLSLVNSVAVQNDGQPYTDDIF 213 (300)
Q Consensus 185 ~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f 213 (300)
...+.+|++.+.+.+..+ ..+|.++++
T Consensus 156 -~~gv~~L~~~L~~~l~~~-~~~y~~~~~ 182 (292)
T PRK00089 156 -GDNVDELLDVIAKYLPEG-PPYYPEDQI 182 (292)
T ss_pred -CCCHHHHHHHHHHhCCCC-CCCCCCCCC
Confidence 247888998888887654 356766643
No 7
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.64 E-value=0.0012 Score=52.54 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=53.6
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..++++||| |+.+.....+... +.+.. .+...+|++++|+.+..+.+..+...+.. . .
T Consensus 44 ~~~~~~~~~i~Dtp-------G~~~~~~~~~~~~--~~~~~-~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~----~ 106 (157)
T cd04164 44 IDIGGIPVRLIDTA-------GIRETEDEIEKIG--IERAR-EAIEEADLVLFVIDASRGLDEEDLEILEL---P----A 106 (157)
T ss_pred EEeCCEEEEEEECC-------CcCCCcchHHHHH--HHHHH-HHHhhCCEEEEEEECCCCCCHHHHHHHHh---h----c
Confidence 34678899999999 8777654332221 11111 22358899999999987888887766554 2 2
Q ss_pred hcceEEEEEcCCCCCC
Q 036659 102 FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~ 117 (300)
-...|+|+|.-|....
T Consensus 107 ~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 107 DKPIIVVLNKSDLLPD 122 (157)
T ss_pred CCCEEEEEEchhcCCc
Confidence 3578999999886643
No 8
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.63 E-value=0.00031 Score=56.18 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
+.|..+... ...++|..+.+|||| |+-+... ...+.+.+....+..+.|++++|+.....++..+...+
T Consensus 30 ~~t~~~~~~-~~~~~~~~~~i~Dtp-------G~~~~~~---~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~ 98 (157)
T cd01894 30 GVTRDRIYG-EAEWGGREFILIDTG-------GIEPDDE---GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIA 98 (157)
T ss_pred CceeCceeE-EEEECCeEEEEEECC-------CCCCchh---HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHH
Confidence 344444443 345778999999999 8765432 34444544444445688999999999877888777666
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
..++.. + ..+++|+|.-|....
T Consensus 99 ~~~~~~-~----~piiiv~nK~D~~~~ 120 (157)
T cd01894 99 KYLRKS-K----KPVILVVNKVDNIKE 120 (157)
T ss_pred HHHHhc-C----CCEEEEEECcccCCh
Confidence 665542 2 688999999886643
No 9
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.45 E-value=0.0017 Score=51.54 Aligned_cols=87 Identities=18% Similarity=0.101 Sum_probs=55.7
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
..+..+.+|||| |+.+........ +.+......+++|++++|+.....++..+...+..+... -.
T Consensus 48 ~~~~~~~liDtp-------G~~~~~~~~~~~---~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~ 112 (168)
T cd04163 48 DDDAQIIFVDTP-------GIHKPKKKLGER---MVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KT 112 (168)
T ss_pred cCCeEEEEEECC-------CCCcchHHHHHH---HHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CC
Confidence 345789999999 877654322211 333334446799999999999866787777666655443 23
Q ss_pred ceEEEEEcCCCCCCCcccHHHhh
Q 036659 104 YMIVVFTGGDELEDNDETLEDYL 126 (300)
Q Consensus 104 y~IVlFT~gD~Le~~~~tledyl 126 (300)
-.+||+|.-|..... ..+.+++
T Consensus 113 ~~iiv~nK~Dl~~~~-~~~~~~~ 134 (168)
T cd04163 113 PVILVLNKIDLVKDK-EDLLPLL 134 (168)
T ss_pred CEEEEEEchhccccH-HHHHHHH
Confidence 467888888865322 3445444
No 10
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.35 E-value=0.007 Score=48.71 Aligned_cols=84 Identities=14% Similarity=0.021 Sum_probs=51.6
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...+|..+.+|||| |+.+.+.....+..-...+...+.++.|++++|+.+....+.+....+..+.. .
T Consensus 45 ~~~~~~~~~iiDtp-------G~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~ 112 (174)
T cd01895 45 FEYDGKKYTLIDTA-------GIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILE-----E 112 (174)
T ss_pred EEECCeeEEEEECC-------CCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-----c
Confidence 35678899999999 66654322111111111112223468999999999987888766554443322 1
Q ss_pred hcceEEEEEcCCCCCC
Q 036659 102 FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~ 117 (300)
-...||++|.-|....
T Consensus 113 ~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 113 GKALVIVVNKWDLVEK 128 (174)
T ss_pred CCCEEEEEeccccCCc
Confidence 2578888998886544
No 11
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.30 E-value=0.0091 Score=48.02 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=52.6
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
+.|..+... ...++|..+.+|||| |+.+....+. ..++.+..... +++|++++|+... .... ....+
T Consensus 28 ~~t~~~~~~-~~~~~~~~~~liDtp-------G~~~~~~~~~--~~~~~~~~~~~-~~~d~vi~v~d~~-~~~~-~~~~~ 94 (158)
T cd01879 28 GVTVEKKEG-RFKLGGKEIEIVDLP-------GTYSLSPYSE--DEKVARDFLLG-EKPDLIVNVVDAT-NLER-NLYLT 94 (158)
T ss_pred CcccccceE-EEeeCCeEEEEEECC-------CccccCCCCh--hHHHHHHHhcC-CCCcEEEEEeeCC-cchh-HHHHH
Confidence 455556554 467889999999999 8766543221 12333322222 8999999999987 4322 12222
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
..+.. + -...|+|+|.-|...
T Consensus 95 ~~~~~-~----~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 95 LQLLE-L----GLPVVVALNMIDEAE 115 (158)
T ss_pred HHHHH-c----CCCEEEEEehhhhcc
Confidence 22221 2 245788889888554
No 12
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.19 E-value=0.0015 Score=51.69 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=52.7
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
+.|..+... ...+++..+.+|||| |+++........ +.+....... .-.|++++|+....+.++.+...+
T Consensus 32 ~~T~~~~~~-~~~~~~~~~~~vDtp-------G~~~~~~~~~~~-~~~~~~~~~~-~~~d~ii~vv~~~~~~~~~~~~~~ 101 (116)
T PF01926_consen 32 GTTRDPVYG-QFEYNNKKFILVDTP-------GINDGESQDNDG-KEIRKFLEQI-SKSDLIIYVVDASNPITEDDKNIL 101 (116)
T ss_dssp TSSSSEEEE-EEEETTEEEEEEESS-------SCSSSSHHHHHH-HHHHHHHHHH-CTESEEEEEEETTSHSHHHHHHHH
T ss_pred cceeeeeee-eeeeceeeEEEEeCC-------CCcccchhhHHH-HHHHHHHHHH-HHCCEEEEEEECCCCCCHHHHHHH
Confidence 455555332 235789999999999 988865433322 2333333333 455999999997744455556666
Q ss_pred HHHHHHhchhhhcceEEEEE
Q 036659 91 HSWQTLFGKNVFDYMIVVFT 110 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT 110 (300)
..+ +.-..+|+||+
T Consensus 102 ~~l------~~~~~~i~v~N 115 (116)
T PF01926_consen 102 REL------KNKKPIILVLN 115 (116)
T ss_dssp HHH------HTTSEEEEEEE
T ss_pred HHH------hcCCCEEEEEc
Confidence 666 25567888876
No 13
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.17 E-value=0.0027 Score=61.26 Aligned_cols=91 Identities=18% Similarity=0.119 Sum_probs=67.2
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.++|..+... ...++|+.+.+|||| |+-+ ..+.+.+++......+-.+.|++|+|+.....+|..+...
T Consensus 31 ~g~t~d~~~~-~~~~~~~~~~liDTp-------G~~~---~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i 99 (429)
T TIGR03594 31 PGVTRDRKYG-DAEWGGREFILIDTG-------GIEE---DDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEI 99 (429)
T ss_pred CCcccCceEE-EEEECCeEEEEEECC-------CCCC---cchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHH
Confidence 4677777766 467899999999999 7532 2244556666655556678999999999987899999887
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
...++. +| ..+|+|.+--|...
T Consensus 100 ~~~l~~-~~----~piilVvNK~D~~~ 121 (429)
T TIGR03594 100 AKWLRK-SG----KPVILVANKIDGKK 121 (429)
T ss_pred HHHHHH-hC----CCEEEEEECccCCc
Confidence 777765 23 46788888777554
No 14
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.17 E-value=0.0025 Score=61.76 Aligned_cols=90 Identities=16% Similarity=0.043 Sum_probs=65.7
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.++|..+... ...++|..+.+|||| |+.+.. +....++..-...+..+.+++|+|+....++|..+...
T Consensus 33 ~~~t~d~~~~-~~~~~~~~~~liDT~-------G~~~~~---~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~ 101 (435)
T PRK00093 33 PGVTRDRIYG-EAEWLGREFILIDTG-------GIEPDD---DGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEI 101 (435)
T ss_pred CCCcccceEE-EEEECCcEEEEEECC-------CCCCcc---hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence 4566666655 367899999999999 877622 22445555545555678999999999988899998888
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
...+... -..+|+|++--|..
T Consensus 102 ~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 102 AKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred HHHHHHc-----CCcEEEEEECccCc
Confidence 7777654 35688888888843
No 15
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.98 E-value=0.017 Score=44.81 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=51.9
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+.++||| |+.+...........+.. ....+|++++|+......+..... +...+ ...-..+
T Consensus 44 ~~~~~~~Dt~-------g~~~~~~~~~~~~~~~~~----~~~~~d~il~v~~~~~~~~~~~~~----~~~~~-~~~~~~~ 107 (163)
T cd00880 44 LGPVVLIDTP-------GIDEAGGLGREREELARR----VLERADLILFVVDADLRADEEEEK----LLELL-RERGKPV 107 (163)
T ss_pred CCcEEEEECC-------CCCccccchhhHHHHHHH----HHHhCCEEEEEEeCCCCCCHHHHH----HHHHH-HhcCCeE
Confidence 6789999999 888766544332222222 235789999999998655555554 11222 1234568
Q ss_pred EEEEEcCCCCCCCcccHHHh
Q 036659 106 IVVFTGGDELEDNDETLEDY 125 (300)
Q Consensus 106 IVlFT~gD~Le~~~~tledy 125 (300)
+||+|.-|..... .+.+.
T Consensus 108 ivv~nK~D~~~~~--~~~~~ 125 (163)
T cd00880 108 LLVLNKIDLLPEE--EEEEL 125 (163)
T ss_pred EEEEEccccCChh--hHHHH
Confidence 9999999987652 44443
No 16
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.88 E-value=0.018 Score=52.88 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=75.2
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+.++||| |+.+... ...+.+.+...-+-.+.+++|+|+......+.+ ...+..++. . -..
T Consensus 46 ~~~qii~vDTP-------G~~~~~~---~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~-~----~~p 109 (270)
T TIGR00436 46 GASQIIFIDTP-------GFHEKKH---SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN-L----KRP 109 (270)
T ss_pred CCcEEEEEECc-------CCCCCcc---hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh-c----CCC
Confidence 45679999999 8876422 223334443333446899999999997544443 444444443 1 246
Q ss_pred eEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC-CeEEEEeCCCcchh
Q 036659 105 MIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD-NRCVLFDNKTKDEA 183 (300)
Q Consensus 105 ~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~-~R~~~FnNk~~de~ 183 (300)
+|+|++--|.... ..+.+.+.. +....+ ..++..+-++.
T Consensus 110 ~ilV~NK~Dl~~~--~~~~~~~~~-----------------------------------~~~~~~~~~v~~iSA~~g--- 149 (270)
T TIGR00436 110 VVLTRNKLDNKFK--DKLLPLIDK-----------------------------------YAILEDFKDIVPISALTG--- 149 (270)
T ss_pred EEEEEECeeCCCH--HHHHHHHHH-----------------------------------HHhhcCCCceEEEecCCC---
Confidence 7899998886532 223332221 111111 14555555432
Q ss_pred hchHHHHHHHHHHHHHHHHcCCCCCChHHHH
Q 036659 184 KRTEQIWKLLSLVNSVAVQNDGQPYTDDIFV 214 (300)
Q Consensus 184 ~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~ 214 (300)
..+.+|++.+.+.+.. +..+|..++..
T Consensus 150 ---~gi~~L~~~l~~~l~~-~~~~~~~~~~t 176 (270)
T TIGR00436 150 ---DNTSFLAAFIEVHLPE-GPFRYPEDYVT 176 (270)
T ss_pred ---CCHHHHHHHHHHhCCC-CCCCCCCcccC
Confidence 4788899998887744 34557766543
No 17
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.84 E-value=0.017 Score=49.07 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=50.4
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChH---HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSK---FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e---~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
..+.++||| |+.+...... .....+...+. ..++.|++|+|+....+++..+...+..+.. .-.
T Consensus 64 ~~~~liDtp-------G~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-----~~~ 130 (179)
T TIGR03598 64 DGFRLVDLP-------GYGYAKVSKEEKEKWQKLIEEYLE-KRENLKGVVLLMDIRHPLKELDLEMLEWLRE-----RGI 130 (179)
T ss_pred CcEEEEeCC-------CCccccCChhHHHHHHHHHHHHHH-hChhhcEEEEEecCCCCCCHHHHHHHHHHHH-----cCC
Confidence 368999999 7655433211 11122222222 3467899999999988899999877655532 234
Q ss_pred ceEEEEEcCCCCCC
Q 036659 104 YMIVVFTGGDELED 117 (300)
Q Consensus 104 y~IVlFT~gD~Le~ 117 (300)
..|||+|.-|.+..
T Consensus 131 pviiv~nK~D~~~~ 144 (179)
T TIGR03598 131 PVLIVLTKADKLKK 144 (179)
T ss_pred CEEEEEECcccCCH
Confidence 67888999886643
No 18
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.68 E-value=0.047 Score=43.45 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=49.7
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHHH----HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKE----IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kE----I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+.+|||| |+-+... +.....+ +..++. ..+..|++++|+.....++..+..++..+.. ++ .
T Consensus 46 ~~~~~D~~-------g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-~~----~ 111 (170)
T cd01876 46 KFRLVDLP-------GYGYAKV-SKEVKEKWGKLIEEYLE-NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-LG----I 111 (170)
T ss_pred eEEEecCC-------Ccccccc-CHHHHHHHHHHHHHHHH-hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-cC----C
Confidence 88899999 7554433 2222222 233333 4567889999998876677777776666643 33 4
Q ss_pred ceEEEEEcCCCCCC
Q 036659 104 YMIVVFTGGDELED 117 (300)
Q Consensus 104 y~IVlFT~gD~Le~ 117 (300)
..++|+|..|.+..
T Consensus 112 ~vi~v~nK~D~~~~ 125 (170)
T cd01876 112 PFLVVLTKADKLKK 125 (170)
T ss_pred CEEEEEEchhcCCh
Confidence 67889999997654
No 19
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.62 E-value=0.03 Score=45.84 Aligned_cols=95 Identities=13% Similarity=0.000 Sum_probs=52.3
Q ss_pred CCCccccCCCceeeC-CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC------C
Q 036659 11 GAPKTAPLPPTIRIQ-VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF------S 83 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~-Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf------T 83 (300)
+.|..+.... ..++ |..+.++||| |+.+.....+.+...+... ..+.+++++|+...... +
T Consensus 28 ~~t~~~~~~~-~~~~~~~~~~i~Dtp-------G~~~~~~~~~~~~~~~~~~----~~~~d~ii~v~d~~~~~~~~~~~~ 95 (176)
T cd01881 28 FTTLEPNLGV-VEVPDGARIQVADIP-------GLIEGASEGRGLGNQFLAH----IRRADAILHVVDASEDDDIGGVDP 95 (176)
T ss_pred ceeecCcceE-EEcCCCCeEEEEecc-------ccchhhhcCCCccHHHHHH----HhccCEEEEEEeccCCccccccCH
Confidence 3455555442 4567 9999999999 8754322222222222221 23689999999987442 3
Q ss_pred HHHHHH-HHHHHHHhc-----hhhhcceEEEEEcCCCCCC
Q 036659 84 QEEEAA-LHSWQTLFG-----KNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 84 ~EE~~a-l~~lq~lFG-----~~i~~y~IVlFT~gD~Le~ 117 (300)
.++... ...+..... ...-.-.+||++--|....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 96 LEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 333222 222322221 1234678888888786543
No 20
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.60 E-value=0.066 Score=45.19 Aligned_cols=79 Identities=10% Similarity=0.143 Sum_probs=48.9
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHH---HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE---IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE---I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
+..+.+|||| |+.+...+. ....+ +....--..++.+++++|+....+++..+....+.+. .+|
T Consensus 69 ~~~l~l~Dtp-------G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~-~~~---- 135 (196)
T PRK00454 69 NDKLRLVDLP-------GYGYAKVSK-EEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLK-EYG---- 135 (196)
T ss_pred CCeEEEeCCC-------CCCCcCCCc-hHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHH-HcC----
Confidence 4689999999 765433222 11222 2221112346788999998877788887766555543 222
Q ss_pred cceEEEEEcCCCCCC
Q 036659 103 DYMIVVFTGGDELED 117 (300)
Q Consensus 103 ~y~IVlFT~gD~Le~ 117 (300)
...+++++.-|.+.+
T Consensus 136 ~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 136 IPVLIVLTKADKLKK 150 (196)
T ss_pred CcEEEEEECcccCCH
Confidence 346888898887654
No 21
>PRK15494 era GTPase Era; Provisional
Probab=96.53 E-value=0.04 Score=52.99 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=52.6
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|..+.++||| |+.+... .+.+.+.++...+-.+.+++|+|+.....|+..+...+..++.. +
T Consensus 95 ~~~~~~qi~~~DTp-------G~~~~~~---~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~--- 160 (339)
T PRK15494 95 ITLKDTQVILYDTP-------GIFEPKG---SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N--- 160 (339)
T ss_pred EEeCCeEEEEEECC-------CcCCCcc---cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C---
Confidence 35678899999999 8765322 24455555554455799999999998767888776666655432 2
Q ss_pred hcceEEEEEcCCC
Q 036659 102 FDYMIVVFTGGDE 114 (300)
Q Consensus 102 ~~y~IVlFT~gD~ 114 (300)
.-.|||.+--|.
T Consensus 161 -~p~IlViNKiDl 172 (339)
T PRK15494 161 -IVPIFLLNKIDI 172 (339)
T ss_pred -CCEEEEEEhhcC
Confidence 234666776663
No 22
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.38 E-value=0.023 Score=50.13 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=47.0
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|+.+++|||| |.- ....++.. +..+.+++|+|+.+...++.+.......+ ..+|
T Consensus 72 ~~~~~~~~~liDTp-------G~~-------~~~~~~~~----~~~~ad~~llVvD~~~~~~~~~~~~~~~~-~~~~--- 129 (208)
T cd04166 72 FSTPKRKFIIADTP-------GHE-------QYTRNMVT----GASTADLAILLVDARKGVLEQTRRHSYIL-SLLG--- 129 (208)
T ss_pred EecCCceEEEEECC-------cHH-------HHHHHHHH----hhhhCCEEEEEEECCCCccHhHHHHHHHH-HHcC---
Confidence 45789999999999 742 12233333 34588999999998766666655443333 3334
Q ss_pred hcceEEEEEcCCCCC
Q 036659 102 FDYMIVVFTGGDELE 116 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le 116 (300)
..++|||.+--|...
T Consensus 130 ~~~iIvviNK~D~~~ 144 (208)
T cd04166 130 IRHVVVAVNKMDLVD 144 (208)
T ss_pred CCcEEEEEEchhccc
Confidence 246777888777553
No 23
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.38 E-value=0.072 Score=43.61 Aligned_cols=91 Identities=23% Similarity=0.230 Sum_probs=50.7
Q ss_pred CccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCCh-HHHHHHHHHhhccCCCCCeEEEEEEeCCCC--CC-HHHHH
Q 036659 13 PKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGS-KFVGKEIVTCIGMAKDGIHAVLVVFSVRSR--FS-QEEEA 88 (300)
Q Consensus 13 T~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~-e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r--fT-~EE~~ 88 (300)
|..+.... ...++..++++||| |+.+..... ..+.......+ .-+.+++|+|+.+..+ |+ ++...
T Consensus 34 t~~~~~~~-~~~~~~~~~i~Dt~-------G~~~~~~~~~~~~~~~~~~~~---~~~~d~~l~v~d~~~~~~~~~~~~~~ 102 (168)
T cd01897 34 TKSLFVGH-FDYKYLRWQVIDTP-------GLLDRPLEERNTIEMQAITAL---AHLRAAVLFLFDPSETCGYSLEEQLS 102 (168)
T ss_pred ccceeEEE-EccCceEEEEEECC-------CcCCccccCCchHHHHHHHHH---HhccCcEEEEEeCCcccccchHHHHH
Confidence 44444332 33567899999999 775533211 11111111111 2245799999988643 33 23344
Q ss_pred HHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 89 ALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
.+..++..++ -..+|||+|-.|....
T Consensus 103 ~~~~l~~~~~---~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 103 LFEEIKPLFK---NKPVIVVLNKIDLLTF 128 (168)
T ss_pred HHHHHHhhcC---cCCeEEEEEccccCch
Confidence 5555655542 3578899998886643
No 24
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.24 E-value=0.034 Score=42.12 Aligned_cols=74 Identities=19% Similarity=0.077 Sum_probs=45.0
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+.++||| |..+..... ....++.+++++|+.+....+.++..................+
T Consensus 44 ~~~~~l~D~~-------g~~~~~~~~-----------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (157)
T cd00882 44 KVKLQIWDTA-------GQERFRSLR-----------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPI 105 (157)
T ss_pred EEEEEEEecC-------ChHHHHhHH-----------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcE
Confidence 7789999999 755432111 2344688999999999844444444333112222223334667
Q ss_pred EEEEEcCCCCCC
Q 036659 106 IVVFTGGDELED 117 (300)
Q Consensus 106 IVlFT~gD~Le~ 117 (300)
+|++|.-|....
T Consensus 106 ivv~nk~D~~~~ 117 (157)
T cd00882 106 ILVGNKIDLPEE 117 (157)
T ss_pred EEEEeccccccc
Confidence 888888886544
No 25
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.22 E-value=0.15 Score=49.32 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=55.1
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
..++|+.+.+|||| |+-+.....+.+..- +.+.. -+-.+.|++|+|+.+..++|..+...+..+.. .|
T Consensus 215 ~~~~~~~~~liDT~-------G~~~~~~~~~~~e~~~~~~~~-~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~-~~-- 283 (429)
T TIGR03594 215 FERNGKKYLLIDTA-------GIRRKGKVTEGVEKYSVLRTL-KAIERADVVLLVLDATEGITEQDLRIAGLILE-AG-- 283 (429)
T ss_pred EEECCcEEEEEECC-------CccccccchhhHHHHHHHHHH-HHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-cC--
Confidence 34689999999999 665433222112111 11111 12357799999999988999998876665543 22
Q ss_pred hhcceEEEEEcCCCCCCCcccHHHhh
Q 036659 101 VFDYMIVVFTGGDELEDNDETLEDYL 126 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le~~~~tledyl 126 (300)
.-+|||.+--|-+++ ...++++.
T Consensus 284 --~~iiiv~NK~Dl~~~-~~~~~~~~ 306 (429)
T TIGR03594 284 --KALVIVVNKWDLVKD-EKTREEFK 306 (429)
T ss_pred --CcEEEEEECcccCCC-HHHHHHHH
Confidence 457777777776522 13444443
No 26
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.13 E-value=0.059 Score=47.86 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=50.1
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.++++.+++|||| |.-+ ...++..++ .+.+++++|+.+...++..++..+..+.. +| .
T Consensus 61 ~~~~~~i~~iDtP-------G~~~-------~~~~~~~~~----~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~---~ 118 (195)
T cd01884 61 ETANRHYAHVDCP-------GHAD-------YIKNMITGA----AQMDGAILVVSATDGPMPQTREHLLLARQ-VG---V 118 (195)
T ss_pred cCCCeEEEEEECc-------CHHH-------HHHHHHHHh----hhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---C
Confidence 3578899999999 7532 234444443 47899999999875677777776665543 34 3
Q ss_pred cceEEEEEcCCCCC
Q 036659 103 DYMIVVFTGGDELE 116 (300)
Q Consensus 103 ~y~IVlFT~gD~Le 116 (300)
.++||+++--|...
T Consensus 119 ~~iIvviNK~D~~~ 132 (195)
T cd01884 119 PYIVVFLNKADMVD 132 (195)
T ss_pred CcEEEEEeCCCCCC
Confidence 56788888888653
No 27
>COG1159 Era GTPase [General function prediction only]
Probab=96.11 E-value=0.071 Score=51.74 Aligned_cols=135 Identities=15% Similarity=0.184 Sum_probs=90.4
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+..++..|||| |++-+. ..+++=+.+++.-+--++.++|+|+.....++..|+..++.++. .-.
T Consensus 51 ~~~~QiIfvDTP-------Gih~pk---~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-----~~~ 115 (298)
T COG1159 51 TDNAQIIFVDTP-------GIHKPK---HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK-----TKT 115 (298)
T ss_pred cCCceEEEEeCC-------CCCCcc---hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh-----cCC
Confidence 346689999999 998763 45666688888888889999999999985699999999999988 223
Q ss_pred ceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchh
Q 036659 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEA 183 (300)
Q Consensus 104 y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~ 183 (300)
-.|++++--|..... ..+...+.. ++. .+..- ..+-++-..
T Consensus 116 pvil~iNKID~~~~~-~~l~~~~~~-----~~~---------------------------~~~f~--~ivpiSA~~---- 156 (298)
T COG1159 116 PVILVVNKIDKVKPK-TVLLKLIAF-----LKK---------------------------LLPFK--EIVPISALK---- 156 (298)
T ss_pred CeEEEEEccccCCcH-HHHHHHHHH-----HHh---------------------------hCCcc--eEEEeeccc----
Confidence 456666666766653 113333221 111 11111 455555443
Q ss_pred hchHHHHHHHHHHHHHHHHcCCCCCChHHHHH
Q 036659 184 KRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVE 215 (300)
Q Consensus 184 ~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e 215 (300)
...+..|++.+...+.++ -.+|..+++.+
T Consensus 157 --g~n~~~L~~~i~~~Lpeg-~~~yp~d~itD 185 (298)
T COG1159 157 --GDNVDTLLEIIKEYLPEG-PWYYPEDQITD 185 (298)
T ss_pred --cCCHHHHHHHHHHhCCCC-CCcCChhhccC
Confidence 357888999998887654 45677666543
No 28
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.98 E-value=0.16 Score=49.39 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=50.9
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHH----HHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGK----EIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFG 98 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~k----EI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG 98 (300)
..+|..+.+|||| |+-+.....+.+.. ...+++ +..|++|+|+.+...+|..+...+..+.. .|
T Consensus 217 ~~~~~~~~lvDT~-------G~~~~~~~~~~~e~~~~~~~~~~~----~~ad~~ilViD~~~~~~~~~~~i~~~~~~-~~ 284 (435)
T PRK00093 217 ERDGQKYTLIDTA-------GIRRKGKVTEGVEKYSVIRTLKAI----ERADVVLLVIDATEGITEQDLRIAGLALE-AG 284 (435)
T ss_pred EECCeeEEEEECC-------CCCCCcchhhHHHHHHHHHHHHHH----HHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC
Confidence 4689999999999 65443222221211 112233 46689999999998899998876665543 23
Q ss_pred hhhhcceEEEEEcCCCC
Q 036659 99 KNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~L 115 (300)
..+||+++--|.+
T Consensus 285 ----~~~ivv~NK~Dl~ 297 (435)
T PRK00093 285 ----RALVIVVNKWDLV 297 (435)
T ss_pred ----CcEEEEEECccCC
Confidence 4678888877865
No 29
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=95.98 E-value=0.77 Score=45.99 Aligned_cols=80 Identities=20% Similarity=0.118 Sum_probs=45.2
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHHHHHH--------------hhccCCCCCeEEEEEEeCC-CCCCHHHHHHHHH
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVT--------------CIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHS 92 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~--------------ci~l~~pGpHA~LLV~~v~-~rfT~EE~~al~~ 92 (300)
.++||||||+= ...|-+.+-+-+..-|.. --.+....+||.|..++-. ..+++-|-+++..
T Consensus 83 ~l~vIDtpGfG----D~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ 158 (373)
T COG5019 83 NLTVIDTPGFG----DFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKR 158 (373)
T ss_pred EEEEeccCCcc----ccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHH
Confidence 68999999441 123444444444333322 1135667899999988743 3667777666665
Q ss_pred HHHHhchhhhcceEEEEEcCCCCCC
Q 036659 93 WQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 93 lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
|-+. =+.|=|..-.|-|.+
T Consensus 159 ls~~------vNlIPVI~KaD~lT~ 177 (373)
T COG5019 159 LSKR------VNLIPVIAKADTLTD 177 (373)
T ss_pred Hhcc------cCeeeeeeccccCCH
Confidence 5321 234444555554443
No 30
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=95.88 E-value=0.038 Score=48.28 Aligned_cols=72 Identities=15% Similarity=0.056 Sum_probs=51.7
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+.++||| |+.+.....+.. .+-+ .-++.++||+|.+ .+||+.|...++.++.. |. ..
T Consensus 51 ~~~l~l~Dtp-------G~~~~~~~~~~~----l~~~--~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ 110 (197)
T cd04104 51 FPNVTLWDLP-------GIGSTAFPPDDY----LEEM--KFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KF 110 (197)
T ss_pred CCCceEEeCC-------CCCcccCCHHHH----HHHh--CccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CE
Confidence 4579999999 877655444333 2222 2457888888854 48999999999999885 53 45
Q ss_pred EEEEEcCCCCCC
Q 036659 106 IVVFTGGDELED 117 (300)
Q Consensus 106 IVlFT~gD~Le~ 117 (300)
++|+|--|.+..
T Consensus 111 ilV~nK~D~~~~ 122 (197)
T cd04104 111 YFVRTKVDRDLS 122 (197)
T ss_pred EEEEecccchhh
Confidence 899999887653
No 31
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=95.87 E-value=0.34 Score=46.93 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=46.5
Q ss_pred eee-CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 22 IRI-QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 22 ~~~-~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
..+ ++..++++||| |+.+.......+.....+.+. ..+++|+|+.+...-+-++...+......+.+.
T Consensus 200 v~~~~~~~~~i~D~P-------Gli~ga~~~~gLg~~flrhie----~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~ 268 (335)
T PRK12299 200 VRVDDYKSFVIADIP-------GLIEGASEGAGLGHRFLKHIE----RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE 268 (335)
T ss_pred EEeCCCcEEEEEeCC-------CccCCCCccccHHHHHHHHhh----hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh
Confidence 345 67899999999 886533222234444434332 457999999987433444443333322333333
Q ss_pred hh-cceEEEEEcCCCC
Q 036659 101 VF-DYMIVVFTGGDEL 115 (300)
Q Consensus 101 i~-~y~IVlFT~gD~L 115 (300)
.. +-.|||++--|-+
T Consensus 269 L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 269 LADKPRILVLNKIDLL 284 (335)
T ss_pred cccCCeEEEEECcccC
Confidence 22 3466777766644
No 32
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=95.84 E-value=0.027 Score=49.41 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=56.6
Q ss_pred CCCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659 9 RFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA 88 (300)
Q Consensus 9 ~~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~ 88 (300)
..|+|..+..+ ....++..+.+|||| |+|+.+..+.+ +.+.+ -.+....|.++++|+... .+ +.+..
T Consensus 30 ~pG~Tv~~~~g-~~~~~~~~~~lvDlP-------G~ysl~~~s~e--e~v~~-~~l~~~~~D~ii~VvDa~-~l-~r~l~ 96 (156)
T PF02421_consen 30 WPGTTVEKKEG-IFKLGDQQVELVDLP-------GIYSLSSKSEE--ERVAR-DYLLSEKPDLIIVVVDAT-NL-ERNLY 96 (156)
T ss_dssp STTSSSEEEEE-EEEETTEEEEEEE-----------SSSSSSSHH--HHHHH-HHHHHTSSSEEEEEEEGG-GH-HHHHH
T ss_pred CCCCCeeeeeE-EEEecCceEEEEECC-------CcccCCCCCcH--HHHHH-HHHhhcCCCEEEEECCCC-CH-HHHHH
Confidence 35788887665 356789999999999 99987654321 12222 222256799999999986 54 33333
Q ss_pred HHHHHHHHhchhhhcceEEEEEcCCCCCCCc
Q 036659 89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDND 119 (300)
Q Consensus 89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~ 119 (300)
.+..+.++ | .-+||+++--|.....+
T Consensus 97 l~~ql~e~-g----~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 97 LTLQLLEL-G----IPVVVVLNKMDEAERKG 122 (156)
T ss_dssp HHHHHHHT-T----SSEEEEEETHHHHHHTT
T ss_pred HHHHHHHc-C----CCEEEEEeCHHHHHHcC
Confidence 33333332 3 45999999888776543
No 33
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.78 E-value=0.22 Score=40.09 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=43.6
Q ss_pred eeC-CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 23 RIQ-VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 23 ~~~-Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
.+. +..+.++||| |. +.....+. ....|.+++|+|+.+...+..+....+..+ ...|.
T Consensus 46 ~~~~~~~~~~~Dtp-------G~-------~~~~~~~~----~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~-~~~~~-- 104 (164)
T cd04171 46 DLPSGKRLGFIDVP-------GH-------EKFIKNML----AGAGGIDLVLLVVAADEGIMPQTREHLEIL-ELLGI-- 104 (164)
T ss_pred EecCCcEEEEEECC-------Ch-------HHHHHHHH----hhhhcCCEEEEEEECCCCccHhHHHHHHHH-HHhCC--
Confidence 344 7899999999 74 11222222 234589999999999743434444444433 22342
Q ss_pred hcceEEEEEcCCCC
Q 036659 102 FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 ~~y~IVlFT~gD~L 115 (300)
..+|+++|--|-.
T Consensus 105 -~~~ilv~NK~Dl~ 117 (164)
T cd04171 105 -KRGLVVLTKADLV 117 (164)
T ss_pred -CcEEEEEECcccc
Confidence 3688899888754
No 34
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.76 E-value=0.11 Score=48.49 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=55.2
Q ss_pred CEEEEEEeCCCCcccCcccCCCCC--ChHHHHHHHHHhhcc-CCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSA--GSKFVGKEIVTCIGM-AKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNV 101 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~--~~e~v~kEI~~ci~l-~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i 101 (300)
.-.+++|||| |+++... .++.+.+.|..-+.. ...-...+|+|++....++..+. ...+.+ . ..
T Consensus 124 ~~~ltLIDlP-------Gl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d-~~ 191 (240)
T smart00053 124 VLNLTLIDLP-------GITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----D-PQ 191 (240)
T ss_pred CCceEEEeCC-------CccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----H-Hc
Confidence 3579999999 8885421 224444444443322 22223488899988767777663 333333 2 23
Q ss_pred hcceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 102 FDYMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
.+.+|+|+|--|.+... ..+-+.+.+
T Consensus 192 ~~rti~ViTK~D~~~~~-~~~~~~~~~ 217 (240)
T smart00053 192 GERTIGVITKLDLMDEG-TDARDILEN 217 (240)
T ss_pred CCcEEEEEECCCCCCcc-HHHHHHHhC
Confidence 57899999999988753 346666654
No 35
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=95.46 E-value=0.02 Score=47.48 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=45.8
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
...+.+|||| |+.+.......+..+ .+ +--+++|+|++....+++.+...+......-+ +.+
T Consensus 100 ~~~~~lvDtP-------G~~~~~~~~~~~~~~---~~----~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~----~~~ 161 (168)
T PF00350_consen 100 LRNLTLVDTP-------GLNSTNSEHTEITEE---YL----PKADVVIFVVDANQDLTESDMEFLKQMLDPDK----SRT 161 (168)
T ss_dssp SCSEEEEEEE-------EBHSSHTTTSHHHHH---HH----STTEEEEEEEETTSTGGGHHHHHHHHHHTTTC----SSE
T ss_pred ccceEEEeCC-------ccccchhhhHHHHHH---hh----ccCCEEEEEeccCcccchHHHHHHHHHhcCCC----CeE
Confidence 3468999999 988755544433232 22 35589999999987788887776666554433 348
Q ss_pred EEEEE
Q 036659 106 IVVFT 110 (300)
Q Consensus 106 IVlFT 110 (300)
|+|+|
T Consensus 162 i~V~n 166 (168)
T PF00350_consen 162 IFVLN 166 (168)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88887
No 36
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=95.35 E-value=0.2 Score=44.04 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=43.1
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHHhchhhhcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-fT~EE~~al~~lq~lFG~~i~~y 104 (300)
++.+++|||| |- +. +...+..+..+++++|+|+.+... .+.+....+..+. ..| ...
T Consensus 82 ~~~i~~iDtP-------G~-------~~----~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~---~~~ 139 (203)
T cd01888 82 VRHVSFVDCP-------GH-------EI----LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMG---LKH 139 (203)
T ss_pred ccEEEEEECC-------Ch-------HH----HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcC---CCc
Confidence 3899999999 72 22 233333444588999999998732 3333344444442 223 246
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
+|||+|--|...
T Consensus 140 iiivvNK~Dl~~ 151 (203)
T cd01888 140 IIIVQNKIDLVK 151 (203)
T ss_pred EEEEEEchhccC
Confidence 888999888553
No 37
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.31 E-value=0.071 Score=56.12 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=64.3
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.++|..+... ...++|+.+.+|||| |+... .+.+.+.+..+...+..+.|++|+|+.....++..+...
T Consensus 307 pGvT~d~~~~-~~~~~~~~~~liDT~-------G~~~~---~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i 375 (712)
T PRK09518 307 PGVTRDRVSY-DAEWAGTDFKLVDTG-------GWEAD---VEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERI 375 (712)
T ss_pred CCeeEEEEEE-EEEECCEEEEEEeCC-------CcCCC---CccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence 4667666554 356889999999999 64421 123556677776666779999999999987899988877
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
...+.. .-.-+|+|++--|...
T Consensus 376 ~~~Lr~-----~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 376 VRMLRR-----AGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHHh-----cCCCEEEEEECccccc
Confidence 766653 2356677777666443
No 38
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=95.24 E-value=0.26 Score=40.04 Aligned_cols=67 Identities=13% Similarity=0.057 Sum_probs=42.9
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+++|||| |..+.. . + ...+.++.|++|+|+.+....+.+....+..+.. +| ...
T Consensus 49 ~~~~~iiDtp-------G~~~~~-------~-~---~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ 105 (168)
T cd01887 49 IPGITFIDTP-------GHEAFT-------N-M---RARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPF 105 (168)
T ss_pred cceEEEEeCC-------CcHHHH-------H-H---HHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCE
Confidence 7899999999 753211 1 1 1122357899999999975555555555554432 33 357
Q ss_pred EEEEEcCCCC
Q 036659 106 IVVFTGGDEL 115 (300)
Q Consensus 106 IVlFT~gD~L 115 (300)
+||+|.-|-.
T Consensus 106 ivv~NK~Dl~ 115 (168)
T cd01887 106 IVALNKIDKP 115 (168)
T ss_pred EEEEEceecc
Confidence 8888988754
No 39
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=95.14 E-value=0.18 Score=52.68 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=48.8
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
+|+.+++|||| |- +...+.+. -...|.+++|||+.++..+.+.....+..+ ..+| ..+
T Consensus 49 ~g~~i~~IDtP-------Gh-------e~fi~~m~----~g~~~~D~~lLVVda~eg~~~qT~ehl~il-~~lg---i~~ 106 (614)
T PRK10512 49 DGRVLGFIDVP-------GH-------EKFLSNML----AGVGGIDHALLVVACDDGVMAQTREHLAIL-QLTG---NPM 106 (614)
T ss_pred CCcEEEEEECC-------CH-------HHHHHHHH----HHhhcCCEEEEEEECCCCCcHHHHHHHHHH-HHcC---CCe
Confidence 68899999999 74 22223333 334589999999999866777777666544 4455 356
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
.|||+|--|...
T Consensus 107 iIVVlNKiDlv~ 118 (614)
T PRK10512 107 LTVALTKADRVD 118 (614)
T ss_pred EEEEEECCccCC
Confidence 789999888653
No 40
>PRK03003 GTP-binding protein Der; Reviewed
Probab=94.94 E-value=0.1 Score=52.10 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=59.1
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.++|...... ...++|+.+.++||| |+-. ....+...+......+..+.|++|+|+.+..+.|..+...
T Consensus 70 ~gvT~d~~~~-~~~~~~~~~~l~DT~-------G~~~---~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i 138 (472)
T PRK03003 70 PGVTRDRVSY-DAEWNGRRFTVVDTG-------GWEP---DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAV 138 (472)
T ss_pred CCCCEeeEEE-EEEECCcEEEEEeCC-------CcCC---cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence 4555555444 356789999999999 6532 1123445555555556678899999999988888887766
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
...++. .-.-+|+|.+--|.
T Consensus 139 ~~~l~~-----~~~piilV~NK~Dl 158 (472)
T PRK03003 139 ARVLRR-----SGKPVILAANKVDD 158 (472)
T ss_pred HHHHHH-----cCCCEEEEEECccC
Confidence 666653 22456666666663
No 41
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=94.89 E-value=0.78 Score=45.46 Aligned_cols=132 Identities=12% Similarity=0.113 Sum_probs=70.3
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC----HHH-HHHHHHHHHHhchh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS----QEE-EAALHSWQTLFGKN 100 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT----~EE-~~al~~lq~lFG~~ 100 (300)
++.+.++||| |+.........+.....+-+ ...+++|+|+.+. .++ .++ ...++.+. .+...
T Consensus 206 ~~~i~~vDtP-------Gi~~~a~~~~~Lg~~~l~~i----~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~-~~~~~ 272 (390)
T PRK12298 206 ERSFVVADIP-------GLIEGASEGAGLGIRFLKHL----ERCRVLLHLIDIA-PIDGSDPVENARIIINELE-KYSPK 272 (390)
T ss_pred CcEEEEEeCC-------CccccccchhhHHHHHHHHH----HhCCEEEEEeccC-cccccChHHHHHHHHHHHH-hhhhh
Confidence 5779999999 88753322222333333322 3568999999875 221 122 22223332 22222
Q ss_pred h-hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC--CeEEEEeC
Q 036659 101 V-FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD--NRCVLFDN 177 (300)
Q Consensus 101 i-~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~--~R~~~FnN 177 (300)
. -+-.|||+|--|.+.. ..+.+.+. . +.+..+ ..++.+.-
T Consensus 273 L~~kP~IlVlNKiDl~~~--~el~~~l~--------~---------------------------l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 273 LAEKPRWLVFNKIDLLDE--EEAEERAK--------A---------------------------IVEALGWEGPVYLISA 315 (390)
T ss_pred hcCCCEEEEEeCCccCCh--HHHHHHHH--------H---------------------------HHHHhCCCCCEEEEEC
Confidence 1 2456888887775432 23333332 2 222222 23555655
Q ss_pred CCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHH
Q 036659 178 KTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFV 214 (300)
Q Consensus 178 k~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~ 214 (300)
++ ...+.+|++.|-..+... -..|.+++..
T Consensus 316 ~t------g~GIdeLl~~I~~~L~~~-~~~~~~~~~t 345 (390)
T PRK12298 316 AS------GLGVKELCWDLMTFIEEN-PREEAEEAEA 345 (390)
T ss_pred CC------CcCHHHHHHHHHHHhhhC-cccCCccccc
Confidence 43 257888998888887653 3345555543
No 42
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=94.88 E-value=0.77 Score=41.72 Aligned_cols=74 Identities=14% Similarity=-0.046 Sum_probs=52.6
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
..+|+.+++|||| |.- ...++..+++. ...+|++++|+.+...++..+...+..+.. .|-
T Consensus 80 ~~~~~~i~liDtp-------G~~-------~~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~-~~i--- 139 (224)
T cd04165 80 EKSSKLVTFIDLA-------GHE-------RYLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALA-LNI--- 139 (224)
T ss_pred eeCCcEEEEEECC-------CcH-------HHHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---
Confidence 4568999999999 632 23345555542 235889999999887888888888887654 342
Q ss_pred cceEEEEEcCCCCCC
Q 036659 103 DYMIVVFTGGDELED 117 (300)
Q Consensus 103 ~y~IVlFT~gD~Le~ 117 (300)
-.||++|--|.+..
T Consensus 140 -p~ivvvNK~D~~~~ 153 (224)
T cd04165 140 -PVFVVVTKIDLAPA 153 (224)
T ss_pred -CEEEEEECccccCH
Confidence 35889998887643
No 43
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=94.82 E-value=0.23 Score=46.51 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=52.9
Q ss_pred eCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHh------------------hccCCCCCeEEEEEEeCCC-CC
Q 036659 24 IQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTC------------------IGMAKDGIHAVLVVFSVRS-RF 82 (300)
Q Consensus 24 ~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~c------------------i~l~~pGpHA~LLV~~v~~-rf 82 (300)
.+| ..++||||| |+.|... .....+.|... ......-+|++|+++.... .+
T Consensus 58 ~~g~~~~l~iiDTp-------Gfgd~~~-~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l 129 (276)
T cd01850 58 ENGVKLKLTVIDTP-------GFGDNIN-NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGL 129 (276)
T ss_pred ECCEEEEEEEEecC-------Ccccccc-chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCC
Confidence 456 469999999 7666532 22222333321 1222346899999998753 68
Q ss_pred CHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 83 SQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 83 T~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
++.|...++.+.. ....|+|+|-.|.+..
T Consensus 130 ~~~D~~~lk~l~~------~v~vi~VinK~D~l~~ 158 (276)
T cd01850 130 KPLDIEFMKRLSK------RVNIIPVIAKADTLTP 158 (276)
T ss_pred CHHHHHHHHHHhc------cCCEEEEEECCCcCCH
Confidence 8888888888764 2467899999998864
No 44
>COG1160 Predicted GTPases [General function prediction only]
Probab=94.69 E-value=0.22 Score=50.79 Aligned_cols=91 Identities=18% Similarity=0.056 Sum_probs=66.9
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.|||.--... .+.|.|+.+.||||+ ||-+.+ .+.+.++|..=...+-.-.+++|+|+..+.-.|++|+..
T Consensus 35 pGvTRDr~y~-~~~~~~~~f~lIDTg-------Gl~~~~--~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~i 104 (444)
T COG1160 35 PGVTRDRIYG-DAEWLGREFILIDTG-------GLDDGD--EDELQELIREQALIAIEEADVILFVVDGREGITPADEEI 104 (444)
T ss_pred CCCccCCccc-eeEEcCceEEEEECC-------CCCcCC--chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH
Confidence 4677766665 589999999999999 776533 345666666655556667889999999987899999999
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
...|.. -.+-.|+|.---|..
T Consensus 105 a~~Lr~-----~~kpviLvvNK~D~~ 125 (444)
T COG1160 105 AKILRR-----SKKPVILVVNKIDNL 125 (444)
T ss_pred HHHHHh-----cCCCEEEEEEcccCc
Confidence 988872 234556665555554
No 45
>PRK12736 elongation factor Tu; Reviewed
Probab=94.66 E-value=0.27 Score=48.08 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=47.4
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+++.+++|||| |.- +++ .++... ..+.|++|||+....-.....+..+..+..+ | ..
T Consensus 72 ~~~~~i~~iDtP-------Gh~------~f~-~~~~~~----~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g---~~ 129 (394)
T PRK12736 72 TEKRHYAHVDCP-------GHA------DYV-KNMITG----AAQMDGAILVVAATDGPMPQTREHILLARQV-G---VP 129 (394)
T ss_pred CCCcEEEEEECC-------CHH------HHH-HHHHHH----HhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CC
Confidence 467899999999 631 333 333333 3478999999998755666666666555433 3 46
Q ss_pred ceEEEEEcCCCC
Q 036659 104 YMIVVFTGGDEL 115 (300)
Q Consensus 104 y~IVlFT~gD~L 115 (300)
++||++|--|..
T Consensus 130 ~~IvviNK~D~~ 141 (394)
T PRK12736 130 YLVVFLNKVDLV 141 (394)
T ss_pred EEEEEEEecCCc
Confidence 788899988865
No 46
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=94.55 E-value=1.3 Score=36.23 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=41.2
Q ss_pred eeCCE-EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-CCHHHH-HHHHHHHHHhch
Q 036659 23 RIQVV-LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-FSQEEE-AALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~Gr-~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-fT~EE~-~al~~lq~lFG~ 99 (300)
..++. .+.++||| |+.+.......+.....+-+ ...+++++|+.+... -+-+.. ...+.+... +.
T Consensus 43 ~~~~~~~~~l~Dtp-------G~~~~~~~~~~~~~~~~~~~----~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~-~~ 110 (170)
T cd01898 43 RVDDGRSFVVADIP-------GLIEGASEGKGLGHRFLRHI----ERTRLLLHVIDLSGDDDPVEDYKTIRNELELY-NP 110 (170)
T ss_pred EcCCCCeEEEEecC-------cccCcccccCCchHHHHHHH----HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHh-Cc
Confidence 34565 89999999 87543222111222211111 256899999998733 122222 222223222 22
Q ss_pred hh-hcceEEEEEcCCCCC
Q 036659 100 NV-FDYMIVVFTGGDELE 116 (300)
Q Consensus 100 ~i-~~y~IVlFT~gD~Le 116 (300)
.. -.-.+||.+.-|...
T Consensus 111 ~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 111 ELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred cccccccEEEEEchhcCC
Confidence 21 234567777777443
No 47
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.45 E-value=0.96 Score=35.48 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=41.6
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--hc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--FD 103 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~~ 103 (300)
+..+.++||| |... ....... +-+..+++++|+.+.. .+.-..+..+...|-... -.
T Consensus 48 ~~~~~l~D~~-------g~~~-------~~~~~~~----~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~ 106 (159)
T cd00154 48 TVKLQIWDTA-------GQER-------FRSITPS----YYRGAHGAILVYDITN---RESFENLDKWLKELKEYAPENI 106 (159)
T ss_pred EEEEEEEecC-------ChHH-------HHHHHHH----HhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCC
Confidence 4678899999 7522 1122222 2346899999999862 333344444444444433 35
Q ss_pred ceEEEEEcCCCC
Q 036659 104 YMIVVFTGGDEL 115 (300)
Q Consensus 104 y~IVlFT~gD~L 115 (300)
.++|+.|.-|..
T Consensus 107 p~ivv~nK~D~~ 118 (159)
T cd00154 107 PIILVGNKIDLE 118 (159)
T ss_pred cEEEEEEccccc
Confidence 678888988865
No 48
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=94.37 E-value=0.36 Score=41.45 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=43.4
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..++++||| |..+ +.+.+..+...++++++|+.+....+..+...+.. ...+| ...
T Consensus 67 ~~~~~i~Dtp-------G~~~-----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~~~~~----~~~ 123 (192)
T cd01889 67 NLQITLVDCP-------GHAS-----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-GEILC----KKL 123 (192)
T ss_pred CceEEEEECC-------CcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-HHHcC----CCE
Confidence 7799999999 7521 22223233457889999999875566555444432 23333 367
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
||+++--|...
T Consensus 124 iiv~NK~Dl~~ 134 (192)
T cd01889 124 IVVLNKIDLIP 134 (192)
T ss_pred EEEEECcccCC
Confidence 88888888653
No 49
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=94.26 E-value=0.49 Score=40.67 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=50.5
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+++.+++|||| |- ....+++.+++. .++++|+|+....-++......+..+. .+|-.
T Consensus 67 ~~~~~i~~iDtP-------G~-------~~f~~~~~~~~~----~~D~ailvVda~~g~~~~~~~~l~~~~-~~~~p--- 124 (188)
T PF00009_consen 67 ENNRKITLIDTP-------GH-------EDFIKEMIRGLR----QADIAILVVDANDGIQPQTEEHLKILR-ELGIP--- 124 (188)
T ss_dssp ESSEEEEEEEES-------SS-------HHHHHHHHHHHT----TSSEEEEEEETTTBSTHHHHHHHHHHH-HTT-S---
T ss_pred ccccceeecccc-------cc-------cceeecccceec----ccccceeeeeccccccccccccccccc-ccccc---
Confidence 679999999999 73 223466777755 568999999987677877777666653 23332
Q ss_pred ceEEEEEcCCCC
Q 036659 104 YMIVVFTGGDEL 115 (300)
Q Consensus 104 y~IVlFT~gD~L 115 (300)
+||++|--|.+
T Consensus 125 -~ivvlNK~D~~ 135 (188)
T PF00009_consen 125 -IIVVLNKMDLI 135 (188)
T ss_dssp -EEEEEETCTSS
T ss_pred -eEEeeeeccch
Confidence 89999998987
No 50
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=94.21 E-value=1.5 Score=42.43 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=43.9
Q ss_pred eeCC-EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC---CCHHHHHHHHHHHHHhc
Q 036659 23 RIQV-VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSWQTLFG 98 (300)
Q Consensus 23 ~~~G-r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r---fT~EE~~al~~lq~lFG 98 (300)
.+++ ..+.++||| |+.+.......+.....+.+ ...+++|+|+.+... -+.++-..+......+.
T Consensus 200 ~~~~~~~~~i~D~P-------Gli~~a~~~~gLg~~flrhi----erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~ 268 (329)
T TIGR02729 200 RVDDGRSFVIADIP-------GLIEGASEGAGLGHRFLKHI----ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS 268 (329)
T ss_pred EeCCceEEEEEeCC-------CcccCCcccccHHHHHHHHH----HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence 4455 899999999 87643211112333333333 245799999998732 12233333322222333
Q ss_pred hhh-hcceEEEEEcCCCCC
Q 036659 99 KNV-FDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i-~~y~IVlFT~gD~Le 116 (300)
... -+-.|||++--|.+.
T Consensus 269 ~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 269 PELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred hhhccCCEEEEEeCccCCC
Confidence 332 245677777667543
No 51
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=94.03 E-value=3 Score=41.88 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=47.6
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
..++|..+.++||| |+-++. +.+..+ +.+... ...+.+++|+|+.+..+.+.++...+. . .
T Consensus 258 i~~~g~~i~l~DT~-------G~~~~~---~~ie~~gi~~~~~-~~~~aD~il~VvD~s~~~s~~~~~~l~---~----~ 319 (449)
T PRK05291 258 INLDGIPLRLIDTA-------GIRETD---DEVEKIGIERSRE-AIEEADLVLLVLDASEPLTEEDDEILE---E----L 319 (449)
T ss_pred EEECCeEEEEEeCC-------CCCCCc---cHHHHHHHHHHHH-HHHhCCEEEEEecCCCCCChhHHHHHH---h----c
Confidence 45789999999999 765432 222222 222222 245788999999998777777544332 2 1
Q ss_pred hhcceEEEEEcCCCC
Q 036659 101 VFDYMIVVFTGGDEL 115 (300)
Q Consensus 101 i~~y~IVlFT~gD~L 115 (300)
.-...|||++--|-.
T Consensus 320 ~~~piiiV~NK~DL~ 334 (449)
T PRK05291 320 KDKPVIVVLNKADLT 334 (449)
T ss_pred CCCCcEEEEEhhhcc
Confidence 124678888877744
No 52
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=93.98 E-value=1.6 Score=37.48 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=42.2
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...++..+.++||| |.-+. ......+ ..+.+++++|+.+...........+.. +...+
T Consensus 60 ~~~~~~~~~l~Dtp-------G~~~~-------~~~~~~~----~~~~d~~ilV~d~~~~~~~~~~~~~~~---~~~~~- 117 (194)
T cd01891 60 VTYKDTKINIVDTP-------GHADF-------GGEVERV----LSMVDGVLLLVDASEGPMPQTRFVLKK---ALELG- 117 (194)
T ss_pred EEECCEEEEEEECC-------CcHHH-------HHHHHHH----HHhcCEEEEEEECCCCccHHHHHHHHH---HHHcC-
Confidence 34678899999999 75332 2233333 358899999999874433333332222 22222
Q ss_pred hcceEEEEEcCCCCC
Q 036659 102 FDYMIVVFTGGDELE 116 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le 116 (300)
.-.||+++--|...
T Consensus 118 -~p~iiv~NK~Dl~~ 131 (194)
T cd01891 118 -LKPIVVINKIDRPD 131 (194)
T ss_pred -CCEEEEEECCCCCC
Confidence 23577788777543
No 53
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=93.97 E-value=1.7 Score=46.98 Aligned_cols=93 Identities=12% Similarity=0.048 Sum_probs=53.6
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChH-HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSK-FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA 88 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e-~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~ 88 (300)
.|+|...... ...+++..+++|||| |.++.+...+ ....|...+..+....++++++|+... .+.. ...
T Consensus 34 pGvTve~k~g-~~~~~~~~i~lvDtP-------G~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat-~ler-~l~ 103 (772)
T PRK09554 34 AGVTVERKEG-QFSTTDHQVTLVDLP-------GTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDAS-NLER-NLY 103 (772)
T ss_pred CCceEeeEEE-EEEcCceEEEEEECC-------CccccccccccccHHHHHHHHHHhccCCCEEEEEecCC-cchh-hHH
Confidence 3455544333 245678899999999 8887654211 122233333344556889999999876 4422 222
Q ss_pred HHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 89 ALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
....+.+ .| .-+||+.+--|..+.
T Consensus 104 l~~ql~e-~g----iPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 104 LTLQLLE-LG----IPCIVALNMLDIAEK 127 (772)
T ss_pred HHHHHHH-cC----CCEEEEEEchhhhhc
Confidence 2222222 22 457888887786543
No 54
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=93.68 E-value=0.4 Score=46.83 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=47.4
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+++.+++|||| |.- +++ .+... +..++|+++||+.+........+..+..+..+ | ..
T Consensus 72 ~~~~~~~liDtp-------Gh~------~f~-~~~~~----~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-g---i~ 129 (394)
T TIGR00485 72 TENRHYAHVDCP-------GHA------DYV-KNMIT----GAAQMDGAILVVSATDGPMPQTREHILLARQV-G---VP 129 (394)
T ss_pred CCCEEEEEEECC-------chH------HHH-HHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CC
Confidence 467899999999 642 233 23332 33588999999999755666666555554432 3 46
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
+.||++|--|...
T Consensus 130 ~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 130 YIVVFLNKCDMVD 142 (394)
T ss_pred EEEEEEEecccCC
Confidence 7778899888653
No 55
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=93.54 E-value=0.69 Score=43.20 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=34.7
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
..++|..+++|||| |..|+. .+...++ .+.+++++|+..........+..+
T Consensus 66 ~~~~~~~i~liDTP-------G~~df~-------~~~~~~l----~~aD~~IlVvda~~g~~~~~~~i~ 116 (267)
T cd04169 66 FEYRDCVINLLDTP-------GHEDFS-------EDTYRTL----TAVDSAVMVIDAAKGVEPQTRKLF 116 (267)
T ss_pred EeeCCEEEEEEECC-------CchHHH-------HHHHHHH----HHCCEEEEEEECCCCccHHHHHHH
Confidence 46789999999999 865532 2334444 367999999998755654444433
No 56
>PRK03003 GTP-binding protein Der; Reviewed
Probab=93.33 E-value=4.2 Score=40.78 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=49.8
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCC---CCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDF---SAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~---~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG 98 (300)
..++|..+.++||| |+-.. ..+.++.. .+.. ..+-.+.|++|+|+.+..++|..+...+..+..
T Consensus 254 ~~~~~~~~~l~DTa-------G~~~~~~~~~~~e~~~-~~~~--~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--- 320 (472)
T PRK03003 254 IELGGKTWRFVDTA-------GLRRRVKQASGHEYYA-SLRT--HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE--- 320 (472)
T ss_pred EEECCEEEEEEECC-------CccccccccchHHHHH-HHHH--HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH---
Confidence 46789999999999 65321 11122211 1110 112358999999999988899988876655543
Q ss_pred hhhhcceEEEEEcCCCC
Q 036659 99 KNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~L 115 (300)
. -.-+|||++--|-.
T Consensus 321 ~--~~piIiV~NK~Dl~ 335 (472)
T PRK03003 321 A--GRALVLAFNKWDLV 335 (472)
T ss_pred c--CCCEEEEEECcccC
Confidence 1 24567777777744
No 57
>PLN03127 Elongation factor Tu; Provisional
Probab=93.22 E-value=0.5 Score=47.53 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=48.4
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+++.+++|||| |.-+ ++ +.+... ..+++++|||+.....++.+++..+..+.. +| ..
T Consensus 121 ~~~~~i~~iDtP-------Gh~~------f~-~~~~~g----~~~aD~allVVda~~g~~~qt~e~l~~~~~-~g---ip 178 (447)
T PLN03127 121 TAKRHYAHVDCP-------GHAD------YV-KNMITG----AAQMDGGILVVSAPDGPMPQTKEHILLARQ-VG---VP 178 (447)
T ss_pred CCCeEEEEEECC-------Cccc------hH-HHHHHH----HhhCCEEEEEEECCCCCchhHHHHHHHHHH-cC---CC
Confidence 467899999999 7632 33 222222 236899999999876677777777666543 34 45
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
+.||+.|--|..+
T Consensus 179 ~iIvviNKiDlv~ 191 (447)
T PLN03127 179 SLVVFLNKVDVVD 191 (447)
T ss_pred eEEEEEEeeccCC
Confidence 6788888878654
No 58
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=93.17 E-value=1.5 Score=40.07 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=45.5
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..+++|||| |..++. .++.+++ .+.+++++|+......+...+.....++. .|
T Consensus 59 ~~~~~~~i~liDTP-------G~~~f~-------~~~~~~l----~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~~--- 116 (237)
T cd04168 59 FQWEDTKVNLIDTP-------GHMDFI-------AEVERSL----SVLDGAILVISAVEGVQAQTRILWRLLRK-LN--- 116 (237)
T ss_pred EEECCEEEEEEeCC-------CccchH-------HHHHHHH----HHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cC---
Confidence 35789999999999 876532 3344444 36689999999876676655555554443 23
Q ss_pred hcceEEEEEcCCCC
Q 036659 102 FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 ~~y~IVlFT~gD~L 115 (300)
.-.||+.+--|..
T Consensus 117 -~P~iivvNK~D~~ 129 (237)
T cd04168 117 -IPTIIFVNKIDRA 129 (237)
T ss_pred -CCEEEEEECcccc
Confidence 2345666655643
No 59
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=93.05 E-value=0.58 Score=48.13 Aligned_cols=112 Identities=19% Similarity=0.375 Sum_probs=61.8
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|..+++|||| |..|+. .+..+++ .+.+++|+|+.+........+..+... ...|
T Consensus 74 ~~~~~~~inliDTP-------G~~df~-------~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~~~-~~~~--- 131 (526)
T PRK00741 74 FPYRDCLINLLDTP-------GHEDFS-------EDTYRTL----TAVDSALMVIDAAKGVEPQTRKLMEVC-RLRD--- 131 (526)
T ss_pred EEECCEEEEEEECC-------CchhhH-------HHHHHHH----HHCCEEEEEEecCCCCCHHHHHHHHHH-HhcC---
Confidence 45789999999999 875543 2344444 367899999988655544433333222 2222
Q ss_pred hcceEEEEEcCCCCCCCc-----ccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccc--hhhhhhcCCeEEE
Q 036659 102 FDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGR--RGILQLCDNRCVL 174 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~~~-----~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Ll~~C~~R~~~ 174 (300)
--+++|-++-++.+.+ ..|++.++. ..-+++ +|+|.|. +|++.....+.+.
T Consensus 132 --iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~-~~~p~~-------------------~Pig~~~~f~Gvvdl~~~~~~~ 189 (526)
T PRK00741 132 --TPIFTFINKLDRDGREPLELLDEIEEVLGI-ACAPIT-------------------WPIGMGKRFKGVYDLYNDEVEL 189 (526)
T ss_pred --CCEEEEEECCcccccCHHHHHHHHHHHhCC-CCeeEE-------------------eccccCCceeEEEEeecceeee
Confidence 2255555554454421 123333322 111222 2455443 6777878888888
Q ss_pred EeC
Q 036659 175 FDN 177 (300)
Q Consensus 175 FnN 177 (300)
|+.
T Consensus 190 ~~~ 192 (526)
T PRK00741 190 YQP 192 (526)
T ss_pred ccc
Confidence 853
No 60
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=93.05 E-value=0.48 Score=39.04 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=47.9
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.+.+..+++|||| |.-+. ......++ ++.|++++|+.....++......+..+.. .-
T Consensus 58 ~~~~~~~~liDtp-------G~~~~-------~~~~~~~~----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~ 114 (189)
T cd00881 58 EWPDRRVNFIDTP-------GHEDF-------SSEVIRGL----SVSDGAILVVDANEGVQPQTREHLRIARE-----GG 114 (189)
T ss_pred eeCCEEEEEEeCC-------CcHHH-------HHHHHHHH----HhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CC
Confidence 4457889999999 75332 12222333 47899999999886677666665555443 34
Q ss_pred cceEEEEEcCCCCC
Q 036659 103 DYMIVVFTGGDELE 116 (300)
Q Consensus 103 ~y~IVlFT~gD~Le 116 (300)
..++||++--|...
T Consensus 115 ~~i~iv~nK~D~~~ 128 (189)
T cd00881 115 LPIIVAINKIDRVG 128 (189)
T ss_pred CCeEEEEECCCCcc
Confidence 67889999888764
No 61
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=92.76 E-value=4.3 Score=32.69 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=38.8
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK 99 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~ 99 (300)
..++| ..+.++||| |. +........++ .+.+++++|+.+...-|-++ +..|...+-.
T Consensus 42 ~~~~~~~~~~~l~D~~-------G~-------~~~~~~~~~~~----~~~d~~ilv~d~~~~~s~~~---~~~~l~~~~~ 100 (164)
T smart00175 42 IEVDGKRVKLQIWDTA-------GQ-------ERFRSITSSYY----RGAVGALLVYDITNRESFEN---LKNWLKELRE 100 (164)
T ss_pred EEECCEEEEEEEEECC-------Ch-------HHHHHHHHHHh----CCCCEEEEEEECCCHHHHHH---HHHHHHHHHH
Confidence 44566 467899999 63 11222223332 47799999999873333322 2222222211
Q ss_pred hh--hcceEEEEEcCCCC
Q 036659 100 NV--FDYMIVVFTGGDEL 115 (300)
Q Consensus 100 ~i--~~y~IVlFT~gD~L 115 (300)
.. ---++|+.|.-|..
T Consensus 101 ~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 101 YADPNVVIMLVGNKSDLE 118 (164)
T ss_pred hCCCCCeEEEEEEchhcc
Confidence 11 23567777776643
No 62
>PRK09866 hypothetical protein; Provisional
Probab=92.54 E-value=14 Score=40.12 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI 106 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I 106 (300)
..+++|||| |+..... ..+.+-+.+.+ .+.++||+|+.....++..|...++.++.. |+. .-.|
T Consensus 230 ~QIIFVDTP-------GIhk~~~--~~L~k~M~eqL----~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVI 293 (741)
T PRK09866 230 GQLTLLDTP-------GPNEAGQ--PHLQKMLNQQL----ARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLY 293 (741)
T ss_pred CCEEEEECC-------CCCCccc--hHHHHHHHHHH----hhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEE
Confidence 467899999 8875432 22444455543 356899999999856899999888887653 321 1466
Q ss_pred EEEEcCCCCCCCc---ccHHHhhh
Q 036659 107 VVFTGGDELEDND---ETLEDYLG 127 (300)
Q Consensus 107 VlFT~gD~Le~~~---~tledyl~ 127 (300)
+|..--|.....+ +.+..|+.
T Consensus 294 LVVNKIDl~dreeddkE~Lle~V~ 317 (741)
T PRK09866 294 VLVNKFDQQDRNSDDADQVRALIS 317 (741)
T ss_pred EEEEcccCCCcccchHHHHHHHHH
Confidence 7777667553221 34556654
No 63
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=92.50 E-value=1.3 Score=41.43 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=38.8
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQ 94 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq 94 (300)
..|++..+++|||| |.+|+ ..++.+++. ..+++|+|+.........+...+..+.
T Consensus 59 ~~~~~~~i~liDTP-------G~~df-------~~~~~~~l~----~aD~ailVVDa~~g~~~~t~~~~~~~~ 113 (270)
T cd01886 59 CFWKDHRINIIDTP-------GHVDF-------TIEVERSLR----VLDGAVAVFDAVAGVEPQTETVWRQAD 113 (270)
T ss_pred EEECCEEEEEEECC-------CcHHH-------HHHHHHHHH----HcCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999 87653 235555554 446889999887667766666665543
No 64
>PRK12735 elongation factor Tu; Reviewed
Probab=92.50 E-value=0.49 Score=46.34 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=46.1
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+++.+++|||| |.- +++ +.+..+..+++++|||+.+....+...+..+..+. ..| ..
T Consensus 72 ~~~~~i~~iDtP-------Gh~------~f~-----~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~-~~g---i~ 129 (396)
T PRK12735 72 TANRHYAHVDCP-------GHA------DYV-----KNMITGAAQMDGAILVVSAADGPMPQTREHILLAR-QVG---VP 129 (396)
T ss_pred CCCcEEEEEECC-------CHH------HHH-----HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHH-HcC---CC
Confidence 467899999999 641 222 33333445899999999987556666555554433 334 45
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
+.||++|--|-..
T Consensus 130 ~iivvvNK~Dl~~ 142 (396)
T PRK12735 130 YIVVFLNKCDMVD 142 (396)
T ss_pred eEEEEEEecCCcc
Confidence 6667788777553
No 65
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=8.5 Score=38.62 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=32.1
Q ss_pred EEEEEeCCCCcccCcccCCCCCChH----HHHHHHHHhh---------ccCCCCCeEEEEEEeCCCC-CCHHHHHHHHHH
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSK----FVGKEIVTCI---------GMAKDGIHAVLVVFSVRSR-FSQEEEAALHSW 93 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e----~v~kEI~~ci---------~l~~pGpHA~LLV~~v~~r-fT~EE~~al~~l 93 (300)
.++||||||+= ...|-+.+-+ .+......-+ .....-+|+.|..++-.+. +.+=|-.++..+
T Consensus 80 ~LtvidtPGfG----D~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l 155 (366)
T KOG2655|consen 80 NLTVIDTPGFG----DAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL 155 (366)
T ss_pred eeEEeccCCCc----ccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH
Confidence 68999999431 2334333322 2222222222 2233378888888875433 555555555444
No 66
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=92.26 E-value=4.3 Score=42.03 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=29.3
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
..+++..++++||| ||.+.......+..+..+-+ ...+++|+|+.+.
T Consensus 201 v~~~~~~f~laDtP-------Gliegas~g~gLg~~fLrhi----eradvLv~VVD~s 247 (500)
T PRK12296 201 VQAGDTRFTVADVP-------GLIPGASEGKGLGLDFLRHI----ERCAVLVHVVDCA 247 (500)
T ss_pred EEECCeEEEEEECC-------CCccccchhhHHHHHHHHHH----HhcCEEEEEECCc
Confidence 34577899999999 88653222223333333322 2457999999875
No 67
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=92.11 E-value=2 Score=44.61 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=46.9
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
..++..+++|||| |- ..++ + .+.....|.+++|+|+.+......+....+..+ ..+| .
T Consensus 46 ~~~~~~v~~iDtP-------Gh------e~f~-~----~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il-~~lg---i 103 (581)
T TIGR00475 46 PLPDYRLGFIDVP-------GH------EKFI-S----NAIAGGGGIDAALLVVDADEGVMTQTGEHLAVL-DLLG---I 103 (581)
T ss_pred EeCCEEEEEEECC-------CH------HHHH-H----HHHhhhccCCEEEEEEECCCCCcHHHHHHHHHH-HHcC---C
Confidence 4567899999999 62 1222 2 222334689999999999754545544445433 3344 3
Q ss_pred cceEEEEEcCCCCC
Q 036659 103 DYMIVVFTGGDELE 116 (300)
Q Consensus 103 ~y~IVlFT~gD~Le 116 (300)
.+.||++|--|...
T Consensus 104 ~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 104 PHTIVVITKADRVN 117 (581)
T ss_pred CeEEEEEECCCCCC
Confidence 57999999888553
No 68
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=92.03 E-value=0.64 Score=46.73 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=51.0
Q ss_pred CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
.|..+... ...++|..+.++||| |+-++. +.+.+. |.++.. .....|++|+|+.+..+.|.++. .
T Consensus 237 tTrd~~~~-~i~~~g~~v~l~DTa-------G~~~~~---~~ie~~gi~~~~~-~~~~aD~il~V~D~s~~~s~~~~-~- 302 (442)
T TIGR00450 237 TTRDVVEG-DFELNGILIKLLDTA-------GIREHA---DFVERLGIEKSFK-AIKQADLVIYVLDASQPLTKDDF-L- 302 (442)
T ss_pred cEEEEEEE-EEEECCEEEEEeeCC-------Ccccch---hHHHHHHHHHHHH-HHhhCCEEEEEEECCCCCChhHH-H-
Confidence 34434333 356889999999999 875543 222221 333332 34589999999999878887664 2
Q ss_pred HHHHHHhchhhhcceEEEEEcCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
+..+-.. -..+|||.+--|.
T Consensus 303 --l~~~~~~--~~piIlV~NK~Dl 322 (442)
T TIGR00450 303 --IIDLNKS--KKPFILVLNKIDL 322 (442)
T ss_pred --HHHHhhC--CCCEEEEEECccC
Confidence 2222111 1346777776664
No 69
>PRK00049 elongation factor Tu; Reviewed
Probab=91.97 E-value=0.55 Score=46.08 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=48.5
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
++++.+++|||| |.- +++ +++ ..+..+.+++|||+.....++..++..+..+.. +| ..
T Consensus 72 ~~~~~i~~iDtP-------G~~------~f~-~~~----~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~-~g---~p 129 (396)
T PRK00049 72 TEKRHYAHVDCP-------GHA------DYV-KNM----ITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VP 129 (396)
T ss_pred CCCeEEEEEECC-------CHH------HHH-HHH----HhhhccCCEEEEEEECCCCCchHHHHHHHHHHH-cC---CC
Confidence 468899999999 642 222 233 333468899999999876677777776665543 44 45
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
++||++|--|...
T Consensus 130 ~iiVvvNK~D~~~ 142 (396)
T PRK00049 130 YIVVFLNKCDMVD 142 (396)
T ss_pred EEEEEEeecCCcc
Confidence 6677888888653
No 70
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=91.97 E-value=3.1 Score=41.94 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=43.6
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC---CCCHHHHHHHHHHHHHhchh-h
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS---RFSQEEEAALHSWQTLFGKN-V 101 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~---rfT~EE~~al~~lq~lFG~~-i 101 (300)
+..++++||| |+-........+.....+.+ ...+++|+|+.+.. +-+-++-..+......+.+. .
T Consensus 205 ~~~~~laD~P-------Gliega~~~~gLg~~fLrhi----er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~ 273 (424)
T PRK12297 205 GRSFVMADIP-------GLIEGASEGVGLGHQFLRHI----ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLL 273 (424)
T ss_pred CceEEEEECC-------CCcccccccchHHHHHHHHH----hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhcc
Confidence 7899999999 87542111122333333333 24589999999852 12323333332222334443 2
Q ss_pred hcceEEEEEcCCCCCC
Q 036659 102 FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~ 117 (300)
-+-.|||+|--| |.+
T Consensus 274 ~kP~IVV~NK~D-L~~ 288 (424)
T PRK12297 274 ERPQIVVANKMD-LPE 288 (424)
T ss_pred CCcEEEEEeCCC-CcC
Confidence 356777888777 543
No 71
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=91.86 E-value=2.4 Score=44.29 Aligned_cols=89 Identities=16% Similarity=0.069 Sum_probs=50.5
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
++|...... ...++|..++++||| |..+....+.+ +++. ...+...+++++++|+... .+... +
T Consensus 26 G~Tv~~~~~-~i~~~~~~i~lvDtP-------G~~~~~~~s~~--e~v~-~~~l~~~~aDvvI~VvDat-~ler~----l 89 (591)
T TIGR00437 26 GVTVEKKEG-KLGFQGEDIEIVDLP-------GIYSLTTFSLE--EEVA-RDYLLNEKPDLVVNVVDAS-NLERN----L 89 (591)
T ss_pred CeEEEEEEE-EEEECCeEEEEEECC-------CccccCccchH--HHHH-HHHHhhcCCCEEEEEecCC-cchhh----H
Confidence 455444433 245788999999999 87765432211 1222 2222346889999999986 44322 2
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
.....+-.. -.-+||+.+--|..+.
T Consensus 90 ~l~~ql~~~--~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 90 YLTLQLLEL--GIPMILALNLVDEAEK 114 (591)
T ss_pred HHHHHHHhc--CCCEEEEEehhHHHHh
Confidence 222222111 2467888887775543
No 72
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=91.66 E-value=0.61 Score=45.91 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=50.7
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
++|-.+... ...++++.+++|||| |.-+ ..+++.. +..+.+++|||+.+..-+..+.+..+
T Consensus 65 giTid~~~~-~~~~~~~~~~liDtP-------Gh~~-------f~~~~~~----~~~~aD~allVVda~~G~~~qt~~~~ 125 (406)
T TIGR02034 65 GITIDVAYR-YFSTDKRKFIVADTP-------GHEQ-------YTRNMAT----GASTADLAVLLVDARKGVLEQTRRHS 125 (406)
T ss_pred CcCeEeeeE-EEccCCeEEEEEeCC-------CHHH-------HHHHHHH----HHhhCCEEEEEEECCCCCccccHHHH
Confidence 344444332 234678999999999 7322 2233333 33488999999998755655544433
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
..+ ..+| ..+.||++|--|...
T Consensus 126 ~~~-~~~~---~~~iivviNK~D~~~ 147 (406)
T TIGR02034 126 YIA-SLLG---IRHVVLAVNKMDLVD 147 (406)
T ss_pred HHH-HHcC---CCcEEEEEEeccccc
Confidence 332 3445 357888888777653
No 73
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=91.65 E-value=1.4 Score=43.43 Aligned_cols=69 Identities=10% Similarity=0.162 Sum_probs=44.1
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y 104 (300)
++.+++|||| |- +...+.+.... .++|++|||+.+...+ ..+....+..+ ..+| .++
T Consensus 79 ~~~i~liDtP-------Gh-------~~f~~~~~~g~----~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~ 136 (406)
T TIGR03680 79 LRRVSFVDAP-------GH-------ETLMATMLSGA----ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKN 136 (406)
T ss_pred ccEEEEEECC-------CH-------HHHHHHHHHHH----HHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCe
Confidence 6899999999 63 22334444433 3789999999997444 44444444433 4444 246
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
.||++|--|...
T Consensus 137 iIVvvNK~Dl~~ 148 (406)
T TIGR03680 137 IVIVQNKIDLVS 148 (406)
T ss_pred EEEEEEccccCC
Confidence 788888878553
No 74
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=91.64 E-value=7.7 Score=34.10 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=39.6
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK 99 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~ 99 (300)
..++| ..+.+.||| |.-.. . .+.. ....|.|+||||+.+..+-|-++-. .++..+ -.
T Consensus 48 i~~~~~~~~l~iwDt~-------G~~~~-------~-~l~~---~~~~~ad~illVfD~t~~~Sf~~~~--~w~~~i-~~ 106 (189)
T cd04121 48 ILLDGRRVKLQLWDTS-------GQGRF-------C-TIFR---SYSRGAQGIILVYDITNRWSFDGID--RWIKEI-DE 106 (189)
T ss_pred EEECCEEEEEEEEeCC-------CcHHH-------H-HHHH---HHhcCCCEEEEEEECcCHHHHHHHH--HHHHHH-HH
Confidence 44566 466789999 64211 1 1111 1235999999999998655555432 233333 22
Q ss_pred hhhcceEEEEEcCCCCCC
Q 036659 100 NVFDYMIVVFTGGDELED 117 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~Le~ 117 (300)
..-+-.|||.-.+-+|.+
T Consensus 107 ~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 107 HAPGVPKILVGNRLHLAF 124 (189)
T ss_pred hCCCCCEEEEEECccchh
Confidence 222334455544544643
No 75
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=91.53 E-value=5.1 Score=33.26 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=35.9
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh---hc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV---FD 103 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i---~~ 103 (300)
..+.++||| |- +. ........-.+.|++++|+.+..+-| -..+..|...+-... --
T Consensus 63 ~~~~i~Dt~-------G~-------~~----~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~ 121 (180)
T cd04127 63 IHLQLWDTA-------GQ-------ER----FRSLTTAFFRDAMGFLLIFDLTNEQS---FLNVRNWMSQLQTHAYCENP 121 (180)
T ss_pred EEEEEEeCC-------Ch-------HH----HHHHHHHHhCCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCC
Confidence 578899999 61 11 11222223358899999999873322 222333322221111 12
Q ss_pred ceEEEEEcCCCC
Q 036659 104 YMIVVFTGGDEL 115 (300)
Q Consensus 104 y~IVlFT~gD~L 115 (300)
.+|||.|--|-.
T Consensus 122 piiiv~nK~Dl~ 133 (180)
T cd04127 122 DIVLCGNKADLE 133 (180)
T ss_pred cEEEEEeCccch
Confidence 467777766643
No 76
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=91.39 E-value=3.5 Score=36.29 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=29.5
Q ss_pred ceeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659 21 TIRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR 81 (300)
Q Consensus 21 t~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r 81 (300)
...++|+ .+.++||| |+-+.... ...|...-...+-.+.+++|+|+.+.++
T Consensus 41 ~i~~~~~~~~l~i~Dt~-------G~~~~~~~---~~~e~~~~~~~~~~~ad~iilv~D~~~~ 93 (198)
T cd04142 41 AVVLSGRVYDLHILDVP-------NMQRYPGT---AGQEWMDPRFRGLRNSRAFILVYDICSP 93 (198)
T ss_pred EEEECCEEEEEEEEeCC-------CcccCCcc---chhHHHHHHHhhhccCCEEEEEEECCCH
Confidence 3457885 56799999 65332211 1222111111233689999999999744
No 77
>CHL00071 tufA elongation factor Tu
Probab=91.25 E-value=0.69 Score=45.52 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=49.0
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
++++.+++|||| |.- + ..+++.+.+ .+.++++||+....-++..++..+..+. .+| ..
T Consensus 72 ~~~~~~~~iDtP-------Gh~------~-~~~~~~~~~----~~~D~~ilVvda~~g~~~qt~~~~~~~~-~~g---~~ 129 (409)
T CHL00071 72 TENRHYAHVDCP-------GHA------D-YVKNMITGA----AQMDGAILVVSAADGPMPQTKEHILLAK-QVG---VP 129 (409)
T ss_pred cCCeEEEEEECC-------ChH------H-HHHHHHHHH----HhCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CC
Confidence 468899999999 621 2 234444444 3778999999987667777777776554 334 35
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
+.||++|--|...
T Consensus 130 ~iIvvvNK~D~~~ 142 (409)
T CHL00071 130 NIVVFLNKEDQVD 142 (409)
T ss_pred EEEEEEEccCCCC
Confidence 6788899888664
No 78
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=91.22 E-value=4.1 Score=34.90 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=38.3
Q ss_pred eeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659 23 RIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~ 99 (300)
.++|.. +.++||| |.-... .+. .....+.|++|+|+.+.++-|-+. ...+..+......
T Consensus 41 ~~~~~~~~l~i~Dt~-------G~~~~~--------~~~---~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 102 (190)
T cd04144 41 VVDGQPCMLEVLDTA-------GQEEYT--------ALR---DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDE 102 (190)
T ss_pred EECCEEEEEEEEECC-------CchhhH--------HHH---HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc
Confidence 456765 7789999 732111 111 112447899999999974433332 2233334333321
Q ss_pred hhh-cceEEEEEcCCC
Q 036659 100 NVF-DYMIVVFTGGDE 114 (300)
Q Consensus 100 ~i~-~y~IVlFT~gD~ 114 (300)
... .-.|||.+--|-
T Consensus 103 ~~~~~piilvgNK~Dl 118 (190)
T cd04144 103 SAADVPIMIVGNKCDK 118 (190)
T ss_pred cCCCCCEEEEEEChhc
Confidence 111 235556665553
No 79
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=91.21 E-value=5.7 Score=32.07 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=38.7
Q ss_pred eCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchh
Q 036659 24 IQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKN 100 (300)
Q Consensus 24 ~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~ 100 (300)
++| ..+.++||| |. +.....+... ..+.|++++|+.+..+-|-++ ...+..+....+.
T Consensus 44 ~~~~~~~l~~~D~~-------G~-------~~~~~~~~~~----~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~- 104 (161)
T cd01861 44 LEDKTVRLQLWDTA-------GQ-------ERFRSLIPSY----IRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN- 104 (161)
T ss_pred ECCEEEEEEEEECC-------Cc-------HHHHHHHHHH----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-
Confidence 455 358899999 62 1111222222 247899999999974322222 2233333333332
Q ss_pred hhcceEEEEEcCCCCC
Q 036659 101 VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le 116 (300)
-.-++++.+.-|...
T Consensus 105 -~~~iilv~nK~D~~~ 119 (161)
T cd01861 105 -DVIIVLVGNKTDLSD 119 (161)
T ss_pred -CCEEEEEEEChhccc
Confidence 134667777667543
No 80
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=90.68 E-value=1.3 Score=45.63 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=34.7
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH 91 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~ 91 (300)
..++|..+++|||| |..|+. .++.+++ .+.+++|+|+.....+....+..++
T Consensus 75 ~~~~~~~inliDTP-------G~~df~-------~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~ 126 (527)
T TIGR00503 75 FPYRDCLVNLLDTP-------GHEDFS-------EDTYRTL----TAVDNCLMVIDAAKGVETRTRKLME 126 (527)
T ss_pred EeeCCeEEEEEECC-------ChhhHH-------HHHHHHH----HhCCEEEEEEECCCCCCHHHHHHHH
Confidence 35789999999999 864432 3444444 3678899999887555554444443
No 81
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=90.44 E-value=1.1 Score=37.01 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=41.0
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..++++||| |..++ ...+.+.+ .+.+++|+|+.+....+.++...+..+. ..+ ..+
T Consensus 66 ~~~~~l~Dt~-------G~~~~-------~~~~~~~~----~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~~--~~i 122 (179)
T cd01890 66 EYLLNLIDTP-------GHVDF-------SYEVSRSL----AACEGALLLVDATQGVEAQTLANFYLAL---ENN--LEI 122 (179)
T ss_pred cEEEEEEECC-------CChhh-------HHHHHHHH----HhcCeEEEEEECCCCccHhhHHHHHHHH---HcC--CCE
Confidence 5568899999 87543 12233333 3788999999987566655544443322 122 247
Q ss_pred EEEEEcCCC
Q 036659 106 IVVFTGGDE 114 (300)
Q Consensus 106 IVlFT~gD~ 114 (300)
|||++--|.
T Consensus 123 iiv~NK~Dl 131 (179)
T cd01890 123 IPVINKIDL 131 (179)
T ss_pred EEEEECCCC
Confidence 888887774
No 82
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=90.39 E-value=13 Score=39.56 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=50.3
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhh-c-cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCI-G-MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK 99 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci-~-l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~ 99 (300)
..++|..+.+|||| |+-...... .+.|.-..+ . -+-.+.|++|+|+.+..++|..+...+..+..
T Consensus 493 ~~~~~~~~~liDTa-------G~~~~~~~~--~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~---- 559 (712)
T PRK09518 493 VEIDGEDWLFIDTA-------GIKRRQHKL--TGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVD---- 559 (712)
T ss_pred EEECCCEEEEEECC-------CcccCcccc--hhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH----
Confidence 45789999999999 654322111 111211111 1 12368899999999988899998776655533
Q ss_pred hhhcceEEEEEcCCCCC
Q 036659 100 NVFDYMIVVFTGGDELE 116 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~Le 116 (300)
.-.-+|||++--|-..
T Consensus 560 -~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 560 -AGRALVLVFNKWDLMD 575 (712)
T ss_pred -cCCCEEEEEEchhcCC
Confidence 1235677777767543
No 83
>PRK13768 GTPase; Provisional
Probab=90.29 E-value=2.1 Score=39.56 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=45.9
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+.+|||| |..+...- ....+-+.+.+.-. ++.++++|+......+..+......+....=...-...
T Consensus 96 ~~~~~~~d~~-------g~~~~~~~-~~~~~~~~~~l~~~--~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~ 165 (253)
T PRK13768 96 DADYVLVDTP-------GQMELFAF-RESGRKLVERLSGS--SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQ 165 (253)
T ss_pred CCCEEEEeCC-------cHHHHHhh-hHHHHHHHHHHHhc--CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 4478999999 75432211 11222233333211 28899999998644556664444333211101123578
Q ss_pred EEEEEcCCCCCC
Q 036659 106 IVVFTGGDELED 117 (300)
Q Consensus 106 IVlFT~gD~Le~ 117 (300)
|+|+|-.|.+..
T Consensus 166 i~v~nK~D~~~~ 177 (253)
T PRK13768 166 IPVLNKADLLSE 177 (253)
T ss_pred EEEEEhHhhcCc
Confidence 899999998865
No 84
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=90.29 E-value=8 Score=31.21 Aligned_cols=49 Identities=31% Similarity=0.372 Sum_probs=28.6
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh-cceEEEEEcCCCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF-DYMIVVFTGGDELED 117 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~-~y~IVlFT~gD~Le~ 117 (300)
-.+.|++++|+.+.++ +--..+..+...+....- --.|||.|.-|....
T Consensus 72 ~~~~~~~v~v~d~~~~---~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 72 YRGAQACILVFSTTDR---ESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred hcCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence 3589999999998632 222334444444433221 246788887775543
No 85
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=90.27 E-value=3.5 Score=40.90 Aligned_cols=70 Identities=9% Similarity=0.206 Sum_probs=43.5
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y 104 (300)
.+.++++||| |- .+++ .++.. ...+.+++|+|+.+...+ +.+....+..+. ..| ...
T Consensus 84 ~~~i~liDtP-------G~------~~f~-~~~~~----~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~---i~~ 141 (411)
T PRK04000 84 LRRVSFVDAP-------GH------ETLM-ATMLS----GAALMDGAILVIAANEPCPQPQTKEHLMALD-IIG---IKN 141 (411)
T ss_pred ccEEEEEECC-------CH------HHHH-HHHHH----HHhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCc
Confidence 3789999999 72 1222 23322 345789999999987544 455455554443 333 245
Q ss_pred eEEEEEcCCCCCC
Q 036659 105 MIVVFTGGDELED 117 (300)
Q Consensus 105 ~IVlFT~gD~Le~ 117 (300)
.|||+|--|....
T Consensus 142 iiVVlNK~Dl~~~ 154 (411)
T PRK04000 142 IVIVQNKIDLVSK 154 (411)
T ss_pred EEEEEEeeccccc
Confidence 7888888886543
No 86
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=90.20 E-value=2 Score=36.26 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=35.3
Q ss_pred EEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEE
Q 036659 31 VIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFT 110 (300)
Q Consensus 31 VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT 110 (300)
+|||| |.+... ++ ..+++.. ...+.+++|+|+.+....+... ..+.. ++.. .-.+++.+
T Consensus 41 ~iDtp-------G~~~~~--~~-~~~~~~~----~~~~ad~il~v~d~~~~~s~~~----~~~~~-~~~~--~~ii~v~n 99 (158)
T PRK15467 41 DIDTP-------GEYFSH--PR-WYHALIT----TLQDVDMLIYVHGANDPESRLP----AGLLD-IGVS--KRQIAVIS 99 (158)
T ss_pred cccCC-------ccccCC--HH-HHHHHHH----HHhcCCEEEEEEeCCCcccccC----HHHHh-ccCC--CCeEEEEE
Confidence 79999 876543 22 2334322 2468999999999874332211 12222 2221 23677777
Q ss_pred cCCC
Q 036659 111 GGDE 114 (300)
Q Consensus 111 ~gD~ 114 (300)
--|.
T Consensus 100 K~Dl 103 (158)
T PRK15467 100 KTDM 103 (158)
T ss_pred cccc
Confidence 7774
No 87
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=90.14 E-value=1.2 Score=44.99 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=45.6
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.++++.+++|||| |. +...+++..+ ..+++++|||+.....++...+..+. +...+| .
T Consensus 103 ~~~~~~i~~iDTP-------Gh-------~~f~~~~~~~----l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg---~ 160 (474)
T PRK05124 103 STEKRKFIIADTP-------GH-------EQYTRNMATG----ASTCDLAILLIDARKGVLDQTRRHSF-IATLLG---I 160 (474)
T ss_pred ccCCcEEEEEECC-------Cc-------HHHHHHHHHH----HhhCCEEEEEEECCCCccccchHHHH-HHHHhC---C
Confidence 4678899999999 72 1223344444 36889999999986555443332222 234445 3
Q ss_pred cceEEEEEcCCCCC
Q 036659 103 DYMIVVFTGGDELE 116 (300)
Q Consensus 103 ~y~IVlFT~gD~Le 116 (300)
++.||+.|--|...
T Consensus 161 ~~iIvvvNKiD~~~ 174 (474)
T PRK05124 161 KHLVVAVNKMDLVD 174 (474)
T ss_pred CceEEEEEeecccc
Confidence 57888888777653
No 88
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=89.59 E-value=1.2 Score=46.44 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=45.8
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++++.+++|||| |.- ++ .+.+.. +..+.+++|||+.+...++.+.+..+..+ ..+|
T Consensus 99 ~~~~~~~~~liDtP-------G~~------~f-~~~~~~----~~~~aD~~llVvda~~g~~~~t~e~~~~~-~~~~--- 156 (632)
T PRK05506 99 FATPKRKFIVADTP-------GHE------QY-TRNMVT----GASTADLAIILVDARKGVLTQTRRHSFIA-SLLG--- 156 (632)
T ss_pred EccCCceEEEEECC-------ChH------HH-HHHHHH----HHHhCCEEEEEEECCCCccccCHHHHHHH-HHhC---
Confidence 35678899999999 731 22 233333 33588999999998655554444333333 3334
Q ss_pred hcceEEEEEcCCCCC
Q 036659 102 FDYMIVVFTGGDELE 116 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le 116 (300)
..+.||+++--|...
T Consensus 157 ~~~iivvvNK~D~~~ 171 (632)
T PRK05506 157 IRHVVLAVNKMDLVD 171 (632)
T ss_pred CCeEEEEEEeccccc
Confidence 257788888878654
No 89
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=89.50 E-value=1.2 Score=42.29 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=46.2
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhh-----------------ccCCCCCeEEEEEEeCC-CCCCHHHHHH
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCI-----------------GMAKDGIHAVLVVFSVR-SRFSQEEEAA 89 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci-----------------~l~~pGpHA~LLV~~v~-~rfT~EE~~a 89 (300)
.++||||| |+.|. ......-+.|...| ....+-+||.|..++.. .++++.|-.+
T Consensus 64 ~LtiiDTp-------GfGd~-i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~ 135 (281)
T PF00735_consen 64 NLTIIDTP-------GFGDN-IDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEF 135 (281)
T ss_dssp EEEEEEEC--------CSSS-STHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHH
T ss_pred EEEEEeCC-------Ccccc-ccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHH
Confidence 78999999 87664 33222222332222 23345689999999974 3789999988
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
++.|.+. =+.|-|.+.+|.|..
T Consensus 136 mk~Ls~~------vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 136 MKRLSKR------VNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHTTT------SEEEEEESTGGGS-H
T ss_pred HHHhccc------ccEEeEEecccccCH
Confidence 8877543 356888999998865
No 90
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=89.35 E-value=6.6 Score=33.63 Aligned_cols=35 Identities=9% Similarity=-0.059 Sum_probs=21.5
Q ss_pred hhhhcCCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcC
Q 036659 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQND 204 (300)
Q Consensus 164 Ll~~C~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~Ng 204 (300)
+....+..|+-.+.++. ..|.+|+..+-..+....
T Consensus 132 l~~~~~~~~~e~Sa~~~------~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 132 LAKEYGVPFMETSAKTG------LNVELAFTAVAKELKHRK 166 (191)
T ss_pred HHHHcCCeEEEEeCCCC------CCHHHHHHHHHHHHHHhc
Confidence 44444555666665542 478888887776665553
No 91
>PRK12739 elongation factor G; Reviewed
Probab=89.23 E-value=2.3 Score=44.90 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=48.5
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
+..|+|+.+++|||| |.-| +. .|+.+.+. +.+++|+|+.....++..++..+..+.. .|
T Consensus 67 ~~~~~~~~i~liDTP-------G~~~------f~-~e~~~al~----~~D~~ilVvDa~~g~~~qt~~i~~~~~~-~~-- 125 (691)
T PRK12739 67 TCFWKGHRINIIDTP-------GHVD------FT-IEVERSLR----VLDGAVAVFDAVSGVEPQSETVWRQADK-YG-- 125 (691)
T ss_pred EEEECCEEEEEEcCC-------CHHH------HH-HHHHHHHH----HhCeEEEEEeCCCCCCHHHHHHHHHHHH-cC--
Confidence 356899999999999 7644 22 35666665 4479999999877788887777766543 33
Q ss_pred hhcceEEEEEcCCCC
Q 036659 101 VFDYMIVVFTGGDEL 115 (300)
Q Consensus 101 i~~y~IVlFT~gD~L 115 (300)
.-.||+.+--|..
T Consensus 126 --~p~iv~iNK~D~~ 138 (691)
T PRK12739 126 --VPRIVFVNKMDRI 138 (691)
T ss_pred --CCEEEEEECCCCC
Confidence 2345555544544
No 92
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=89.10 E-value=1.2 Score=43.61 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC--CCCHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS--RFSQEEE 87 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~--rfT~EE~ 87 (300)
.|+|..+... ...+++..+++|||| |.-+.. +.+... ..+.+++|+|+.+.. .++.+..
T Consensus 68 rG~T~d~~~~-~~~~~~~~i~liDtp-------G~~~~~-------~~~~~~----~~~aD~~ilVvDa~~~~~~~~~~~ 128 (425)
T PRK12317 68 RGVTIDLAHK-KFETDKYYFTIVDCP-------GHRDFV-------KNMITG----ASQADAAVLVVAADDAGGVMPQTR 128 (425)
T ss_pred cCccceeeeE-EEecCCeEEEEEECC-------Ccccch-------hhHhhc----hhcCCEEEEEEEcccCCCCCcchH
Confidence 4555555443 345789999999999 742221 122222 347899999999875 3444444
Q ss_pred HHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 88 AALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 88 ~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
..+..+ ..+|. ...||+.+--|..
T Consensus 129 ~~~~~~-~~~~~---~~iivviNK~Dl~ 152 (425)
T PRK12317 129 EHVFLA-RTLGI---NQLIVAINKMDAV 152 (425)
T ss_pred HHHHHH-HHcCC---CeEEEEEEccccc
Confidence 444333 34452 3567777766744
No 93
>PRK00007 elongation factor G; Reviewed
Probab=89.03 E-value=2.5 Score=44.64 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=48.6
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
+..|+|+.+++|||| |..| +.. |+.+.+.. .+++|||+....-.+.+++..+..+.+. |.
T Consensus 69 ~~~~~~~~~~liDTP-------G~~~------f~~-ev~~al~~----~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~- 128 (693)
T PRK00007 69 TCFWKDHRINIIDTP-------GHVD------FTI-EVERSLRV----LDGAVAVFDAVGGVEPQSETVWRQADKY-KV- 128 (693)
T ss_pred EEEECCeEEEEEeCC-------CcHH------HHH-HHHHHHHH----cCEEEEEEECCCCcchhhHHHHHHHHHc-CC-
Confidence 356889999999999 7544 333 56666653 4689999988767788887777765543 32
Q ss_pred hhcceEEEEEcCCCCC
Q 036659 101 VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le 116 (300)
-.||+.+--|...
T Consensus 129 ---p~iv~vNK~D~~~ 141 (693)
T PRK00007 129 ---PRIAFVNKMDRTG 141 (693)
T ss_pred ---CEEEEEECCCCCC
Confidence 2355555556443
No 94
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=88.49 E-value=2.4 Score=38.53 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=45.7
Q ss_pred CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 036659 12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH 91 (300)
Q Consensus 12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~ 91 (300)
.|..|..+ ...++|..+.++||| |+.+...........+..+ ...++++|+|+.+. . ..+....+.
T Consensus 33 tT~~~~~g-~~~~~~~~i~l~Dtp-------G~~~~~~~~~~~~~~~l~~----~~~ad~il~V~D~t-~-~~~~~~~~~ 98 (233)
T cd01896 33 TTLTCVPG-VLEYKGAKIQLLDLP-------GIIEGAADGKGRGRQVIAV----ARTADLILMVLDAT-K-PEGHREILE 98 (233)
T ss_pred ccccceEE-EEEECCeEEEEEECC-------CcccccccchhHHHHHHHh----hccCCEEEEEecCC-c-chhHHHHHH
Confidence 34456544 346789999999999 8765433222333444333 34778999999875 2 233455555
Q ss_pred HHHHHhchh
Q 036659 92 SWQTLFGKN 100 (300)
Q Consensus 92 ~lq~lFG~~ 100 (300)
....-+|-.
T Consensus 99 ~~l~~~gi~ 107 (233)
T cd01896 99 RELEGVGIR 107 (233)
T ss_pred HHHHHcCce
Confidence 555666664
No 95
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=88.36 E-value=7 Score=31.73 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=27.3
Q ss_pred CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
.+++++++|+.+..+-|-+. ...+..++.+.++++ ..+|+.|.-|..+
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~ 119 (161)
T cd04113 71 RGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLAD 119 (161)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcch
Confidence 48899999999975433332 122233333443332 4677777666443
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=88.27 E-value=14 Score=31.80 Aligned_cols=76 Identities=12% Similarity=0.176 Sum_probs=42.9
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...++..+.++||| |- +... .+ ......|.|++++|+.+.++-+-+ .+...+..++-...
T Consensus 56 ~~~~~~~~~i~D~~-------Gq-------~~~~-~~---~~~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~ 115 (181)
T PLN00223 56 VEYKNISFTVWDVG-------GQ-------DKIR-PL---WRHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDE 115 (181)
T ss_pred EEECCEEEEEEECC-------CC-------HHHH-HH---HHHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHh
Confidence 34567889999999 62 1111 11 112246889999999987432222 23445555554433
Q ss_pred h-cceEEEEEcCCCCCC
Q 036659 102 F-DYMIVVFTGGDELED 117 (300)
Q Consensus 102 ~-~y~IVlFT~gD~Le~ 117 (300)
. +.-++|+-++-++.+
T Consensus 116 ~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 116 LRDAVLLVFANKQDLPN 132 (181)
T ss_pred hCCCCEEEEEECCCCCC
Confidence 3 334555556655654
No 97
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=88.24 E-value=3.4 Score=43.58 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=49.5
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
++|-.+... +..|++..+++|||| |..|.. .++.+.+. +.+++|+|+......+.++...+
T Consensus 60 giti~~~~~-~~~~~~~~i~liDTP-------G~~~~~-------~~~~~~l~----~~D~~ilVvda~~g~~~~~~~~~ 120 (689)
T TIGR00484 60 GITITSAAT-TVFWKGHRINIIDTP-------GHVDFT-------VEVERSLR----VLDGAVAVLDAVGGVQPQSETVW 120 (689)
T ss_pred CCCEecceE-EEEECCeEEEEEECC-------CCcchh-------HHHHHHHH----HhCEEEEEEeCCCCCChhHHHHH
Confidence 344444333 356889999999999 886642 23444443 45899999998766777766666
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
..++. .| .-.||+.+--|..
T Consensus 121 ~~~~~-~~----~p~ivviNK~D~~ 140 (689)
T TIGR00484 121 RQANR-YE----VPRIAFVNKMDKT 140 (689)
T ss_pred HHHHH-cC----CCEEEEEECCCCC
Confidence 55433 22 2345544544533
No 98
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=87.92 E-value=2.7 Score=37.41 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=41.9
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-----CC--HHHHHHHHHHH
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-----FS--QEEEAALHSWQ 94 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-----fT--~EE~~al~~lq 94 (300)
..++|+.+++|||| |..+ +. .++..++ ...+++|+|+.+... |. .+....+...
T Consensus 72 ~~~~~~~i~liDtp-------G~~~------~~-~~~~~~~----~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~- 132 (219)
T cd01883 72 FETEKYRFTILDAP-------GHRD------FV-PNMITGA----SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA- 132 (219)
T ss_pred EeeCCeEEEEEECC-------ChHH------HH-HHHHHHh----hhCCEEEEEEECCCCccccccccccchHHHHHHH-
Confidence 35789999999999 7533 22 3333332 367899999998642 11 1222222222
Q ss_pred HHhchhhhcceEEEEEcCCCC
Q 036659 95 TLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 95 ~lFG~~i~~y~IVlFT~gD~L 115 (300)
..+| ...+||+++--|..
T Consensus 133 ~~~~---~~~iiivvNK~Dl~ 150 (219)
T cd01883 133 RTLG---VKQLIVAVNKMDDV 150 (219)
T ss_pred HHcC---CCeEEEEEEccccc
Confidence 2333 24677788777755
No 99
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.82 E-value=3.4 Score=44.37 Aligned_cols=45 Identities=36% Similarity=0.492 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHHhhcchHHHHHHHHH------------------HHhcHHHHHHHHHHHHHH
Q 036659 237 KETSRLEQQLTEEQAAPLKVEEAAQLA------------------QMKSNDEIRKLRENLERA 281 (300)
Q Consensus 237 ~~~~~lE~q~~~eq~a~le~e~~~~~~------------------~~~~~~~i~~lre~le~~ 281 (300)
+....+|+||.+|++++.+.|+.+++. +...+.|+++||.+|...
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~k 564 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQK 564 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888887766555542 345667788888776553
No 100
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=87.32 E-value=7.7 Score=31.90 Aligned_cols=74 Identities=20% Similarity=0.093 Sum_probs=40.6
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHh
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLF 97 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lF 97 (300)
..++|. .+.++||| |.-.... + ......+.|++|+|+.+.++-|-++. .-+..+...+
T Consensus 39 ~~~~~~~~~~~i~Dt~-------G~~~~~~--------~---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~ 100 (174)
T smart00174 39 VEVDGKPVELGLWDTA-------GQEDYDR--------L---RPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC 100 (174)
T ss_pred EEECCEEEEEEEEECC-------CCcccch--------h---chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence 345665 47788999 6422111 1 11235689999999999754333322 1233333322
Q ss_pred chhhhcceEEEEEcCCCCC
Q 036659 98 GKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 98 G~~i~~y~IVlFT~gD~Le 116 (300)
. -..+|||-|.-|-..
T Consensus 101 ~---~~piilv~nK~Dl~~ 116 (174)
T smart00174 101 P---NTPIILVGTKLDLRE 116 (174)
T ss_pred C---CCCEEEEecChhhhh
Confidence 1 245677777767443
No 101
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=87.26 E-value=14 Score=29.67 Aligned_cols=71 Identities=18% Similarity=0.114 Sum_probs=38.2
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchh---hh
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKN---VF 102 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~---i~ 102 (300)
..+.++||| |.-.. .........+.+++|+|+.+..+-|-++ ..-+..+....++. .-
T Consensus 49 ~~l~i~Dt~-------G~~~~-----------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 110 (168)
T cd04119 49 VRVNFFDLS-------GHPEY-----------LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMEN 110 (168)
T ss_pred EEEEEEECC-------ccHHH-----------HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCC
Confidence 467799999 74211 1112223468899999999874422221 12223333333321 12
Q ss_pred cceEEEEEcCCCC
Q 036659 103 DYMIVVFTGGDEL 115 (300)
Q Consensus 103 ~y~IVlFT~gD~L 115 (300)
.-.|+|.|-.|..
T Consensus 111 ~piilv~nK~Dl~ 123 (168)
T cd04119 111 IVVVVCANKIDLT 123 (168)
T ss_pred ceEEEEEEchhcc
Confidence 3467777777754
No 102
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=87.22 E-value=5 Score=34.47 Aligned_cols=83 Identities=14% Similarity=0.044 Sum_probs=44.9
Q ss_pred eCCE-EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 24 IQVV-LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 24 ~~Gr-~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
+++. .+.++||| |+-+. .... .......-+ ....+.+++++|+.+..+-+.++...+..+...++.. -
T Consensus 85 ~~~~~~~~i~Dt~-------G~~~~-~~~~-~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~-~ 153 (204)
T cd01878 85 LPDGREVLLTDTV-------GFIRD-LPHQ-LVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE-D 153 (204)
T ss_pred ecCCceEEEeCCC-------ccccC-CCHH-HHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC-C
Confidence 3343 89999999 86432 1221 111111111 1234778999999987555555443332222223321 1
Q ss_pred cceEEEEEcCCCCCC
Q 036659 103 DYMIVVFTGGDELED 117 (300)
Q Consensus 103 ~y~IVlFT~gD~Le~ 117 (300)
...|||+|--|.+..
T Consensus 154 ~~viiV~NK~Dl~~~ 168 (204)
T cd01878 154 IPMILVLNKIDLLDD 168 (204)
T ss_pred CCEEEEEEccccCCh
Confidence 457888888886654
No 103
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.14 E-value=3.3 Score=39.00 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=46.9
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhc----cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIG----MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~----l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
.|..+.+|||| |.... ......|+.+-.. ..+.+||-++||++.. ..++.. ... ..|-+
T Consensus 153 ~~~D~ViIDT~-------G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~--~~~~~~---~~~-~~f~~- 215 (272)
T TIGR00064 153 RNIDVVLIDTA-------GRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT--TGQNAL---EQA-KVFNE- 215 (272)
T ss_pred CCCCEEEEeCC-------CCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECC--CCHHHH---HHH-HHHHh-
Confidence 57789999999 65442 3444455555443 3456899999999985 233333 222 22222
Q ss_pred hhcceEEEEEcCCCCCC
Q 036659 101 VFDYMIVVFTGGDELED 117 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le~ 117 (300)
.....=|+||.=|+-..
T Consensus 216 ~~~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 216 AVGLTGIILTKLDGTAK 232 (272)
T ss_pred hCCCCEEEEEccCCCCC
Confidence 23467889998776543
No 104
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=87.06 E-value=13 Score=31.46 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=25.9
Q ss_pred CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
.+.|++|+|+.+..+-|-++ ...+..++.. .. -.-.|||.|..|-.
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~--~~piilv~nK~Dl~ 118 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EE--HCKIYLCGTKSDLI 118 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CC--CCCEEEEEEccccc
Confidence 47899999999874422222 1122222221 11 23578888888843
No 105
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=87.02 E-value=2.4 Score=38.82 Aligned_cols=119 Identities=20% Similarity=0.202 Sum_probs=64.2
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|..+++|||| |..|+ ..+...++. +.+++++|+.............+..+. .+|
T Consensus 59 ~~~~~~~i~liDtP-------G~~~f-------~~~~~~~l~----~aD~~i~Vvd~~~g~~~~~~~~~~~~~-~~~--- 116 (268)
T cd04170 59 LEWKGHKINLIDTP-------GYADF-------VGETRAALR----AADAALVVVSAQSGVEVGTEKLWEFAD-EAG--- 116 (268)
T ss_pred EEECCEEEEEEECc-------CHHHH-------HHHHHHHHH----HCCEEEEEEeCCCCCCHHHHHHHHHHH-HcC---
Confidence 35789999999999 76542 233444443 567899999887555554444444332 222
Q ss_pred hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeC
Q 036659 102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDN 177 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnN 177 (300)
.-.+|+++.-|....+-...-+.|++ .+. .--+|.+++..=+.+| ++++.....+-+.|.+
T Consensus 117 -~p~iivvNK~D~~~~~~~~~~~~l~~----~~~--~~~~~~~ip~~~~~~~--------~~~vd~~~~~~~~~~~ 177 (268)
T cd04170 117 -IPRIIFINKMDRERADFDKTLAALQE----AFG--RPVVPLQLPIGEGDDF--------KGVVDLLTEKAYIYSP 177 (268)
T ss_pred -CCEEEEEECCccCCCCHHHHHHHHHH----HhC--CCeEEEEecccCCCce--------eEEEEcccCEEEEccC
Confidence 24566777777554311111122322 121 1234445544444554 2356666667777743
No 106
>PLN03126 Elongation factor Tu; Provisional
Probab=86.96 E-value=4.2 Score=41.49 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=45.9
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
++++.+++|||| |.- ++ .+++...+ .++++.|||+....-.....+..+..+. .+| ..
T Consensus 141 ~~~~~i~liDtP-------Gh~------~f-~~~~~~g~----~~aD~ailVVda~~G~~~qt~e~~~~~~-~~g---i~ 198 (478)
T PLN03126 141 TENRHYAHVDCP-------GHA------DY-VKNMITGA----AQMDGAILVVSGADGPMPQTKEHILLAK-QVG---VP 198 (478)
T ss_pred cCCcEEEEEECC-------CHH------HH-HHHHHHHH----hhCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CC
Confidence 578899999999 632 22 23444444 4889999999876445555444444333 334 46
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
+.||+++--|...
T Consensus 199 ~iIvvvNK~Dl~~ 211 (478)
T PLN03126 199 NMVVFLNKQDQVD 211 (478)
T ss_pred eEEEEEecccccC
Confidence 7888899888654
No 107
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=86.74 E-value=5.7 Score=40.46 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=43.2
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y 104 (300)
.+.+++|||| |- +...+++...+ .+++++|||+.+.... ..+-+..+. +...+|- .+
T Consensus 116 ~~~i~~IDtP-------GH-------~~fi~~m~~g~----~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~ 173 (460)
T PTZ00327 116 KRHVSFVDCP-------GH-------DILMATMLNGA----AVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KH 173 (460)
T ss_pred cceEeeeeCC-------CH-------HHHHHHHHHHH----hhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---Cc
Confidence 5689999999 72 33344544444 4789999999987332 222222232 3345563 68
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
.||++|--|..
T Consensus 174 iIVvlNKiDlv 184 (460)
T PTZ00327 174 IIILQNKIDLV 184 (460)
T ss_pred EEEEEeccccc
Confidence 89999988855
No 108
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=86.59 E-value=20 Score=30.98 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=12.2
Q ss_pred CCCeEEEEEEeCCCC
Q 036659 67 DGIHAVLVVFSVRSR 81 (300)
Q Consensus 67 pGpHA~LLV~~v~~r 81 (300)
.+.++|++|+.+..+
T Consensus 77 ~~a~~iilv~D~~~~ 91 (199)
T cd04110 77 RGTHGVIVVYDVTNG 91 (199)
T ss_pred CCCcEEEEEEECCCH
Confidence 467999999998743
No 109
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=86.50 E-value=4.8 Score=32.16 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=28.5
Q ss_pred CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 65 AKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
...+.|++++|+.+....|..+. .+...++ ..+|+|++--|-.
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~----~~~~~~~----~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPP----GFASIFV----KPVIGLVTKIDLA 101 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCCh----hHHHhcc----CCeEEEEEeeccC
Confidence 36799999999999766654432 2333343 2677888877743
No 110
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=86.24 E-value=15 Score=29.20 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=28.0
Q ss_pred CCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
.+.|++++|+.+..+-+-++.. .++.++..... -...|||+|.-|..
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~ 118 (162)
T cd04123 71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLE 118 (162)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccc
Confidence 5789999999986443333322 22334444332 23578888877755
No 111
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=86.22 E-value=13 Score=30.03 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=26.2
Q ss_pred CCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcceEEEEEcCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
..+.|++|+|+.+.++-|-++. ..++.+...-+.. -.-.|||.|--|-
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl 118 (163)
T cd04136 70 IKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTE-NVPMVLVGNKCDL 118 (163)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECccc
Confidence 3578999999999744333322 2223333332221 1245677776663
No 112
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=86.19 E-value=8.2 Score=30.69 Aligned_cols=76 Identities=16% Similarity=0.034 Sum_probs=40.6
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG 98 (300)
...+| ..+.++||| |..+. ......+ -.+.+++++|+.+.+.-+-++ ......+....+
T Consensus 40 ~~~~~~~~~~~l~D~~-------g~~~~-------~~~~~~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 101 (160)
T cd00876 40 IVVDGETYTLDILDTA-------GQEEF-------SAMRDLY----IRQGDGFILVYSITDRESFEEIKGYREQILRVKD 101 (160)
T ss_pred EEECCEEEEEEEEECC-------ChHHH-------HHHHHHH----HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 34454 467889999 64331 1112222 236799999999863322222 122233333333
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
. .-...+|+.+.-|...
T Consensus 102 ~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 102 D-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred C-CCCcEEEEEECCcccc
Confidence 1 2346678888877654
No 113
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=86.18 E-value=12 Score=33.37 Aligned_cols=73 Identities=21% Similarity=0.134 Sum_probs=38.0
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG 98 (300)
..++| ..+.++||| |.. ..+.. .|... +.|++|+|+.+.++-|-+. ...+..+... .
T Consensus 43 i~~~~~~~~l~i~Dt~-------G~~------~~~~~---~~~~~---~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~ 102 (221)
T cd04148 43 VSVDGEESTLVVIDHW-------EQE------MWTED---SCMQY---QGDAFVVVYSVTDRSSFERASELRIQLRRN-R 102 (221)
T ss_pred EEECCEEEEEEEEeCC-------Ccc------hHHHh---HHhhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence 34544 568899999 754 11111 12222 8999999999975433322 1122222222 1
Q ss_pred hhhhcceEEEEEcCCC
Q 036659 99 KNVFDYMIVVFTGGDE 114 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~ 114 (300)
...-.-.|||.|--|-
T Consensus 103 ~~~~~piilV~NK~Dl 118 (221)
T cd04148 103 QLEDRPIILVGNKSDL 118 (221)
T ss_pred CCCCCCEEEEEEChhc
Confidence 1112345777776663
No 114
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=86.14 E-value=18 Score=29.80 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=13.1
Q ss_pred CCCCeEEEEEEeCCCC
Q 036659 66 KDGIHAVLVVFSVRSR 81 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~r 81 (300)
..+.|++|+|+.+.++
T Consensus 72 ~~~~~~~ilv~d~~~~ 87 (166)
T cd04122 72 YRGAAGALMVYDITRR 87 (166)
T ss_pred hcCCCEEEEEEECCCH
Confidence 3589999999999743
No 115
>COG1160 Predicted GTPases [General function prediction only]
Probab=86.14 E-value=21 Score=36.73 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=63.1
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCC--CCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDF--SAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFG 98 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~--~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG 98 (300)
..+++|+...+|||-|.|... .+.+. ..+.-...+.|.+ .++||||+.....||++|...+..+.+
T Consensus 220 ~~e~~~~~~~liDTAGiRrk~-ki~e~~E~~Sv~rt~~aI~~--------a~vvllviDa~~~~~~qD~~ia~~i~~--- 287 (444)
T COG1160 220 EFERDGRKYVLIDTAGIRRKG-KITESVEKYSVARTLKAIER--------ADVVLLVIDATEGISEQDLRIAGLIEE--- 287 (444)
T ss_pred eEEECCeEEEEEECCCCCccc-ccccceEEEeehhhHhHHhh--------cCEEEEEEECCCCchHHHHHHHHHHHH---
Confidence 457889999999999666533 22221 1122333344443 369999999988899999999888754
Q ss_pred hhhhcceEEEEEcCCCCCCCcccHHHhhh
Q 036659 99 KNVFDYMIVVFTGGDELEDNDETLEDYLG 127 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le~~~~tledyl~ 127 (300)
.-+=.||||---|-++.+..++++|-.
T Consensus 288 --~g~~~vIvvNKWDl~~~~~~~~~~~k~ 314 (444)
T COG1160 288 --AGRGIVIVVNKWDLVEEDEATMEEFKK 314 (444)
T ss_pred --cCCCeEEEEEccccCCchhhHHHHHHH
Confidence 455678888888877754346666643
No 116
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=86.05 E-value=9.7 Score=36.77 Aligned_cols=34 Identities=18% Similarity=-0.006 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 036659 186 TEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLL 219 (300)
Q Consensus 186 ~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~ 219 (300)
-+.+..||.+|=.++..-..-.++++....+.+.
T Consensus 230 ~~~~~~l~~~v~~l~D~~~~~~l~~e~~~K~~k~ 263 (321)
T PF07946_consen 230 MEALEPLLKLVFYLIDKLARFKLSPEAKKKAKKN 263 (321)
T ss_pred HHHHHHHHHHHHHHHHHhheeeeCHHHHHHHHHH
Confidence 5678888888877777766667888888777753
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=85.66 E-value=15 Score=30.80 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=45.0
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...++..+.++||| |-.. .......+ ..+.|++++|+....+-+-+ .+-..+..++....
T Consensus 38 ~~~~~~~~~i~D~~-------G~~~-------~~~~~~~~----~~~a~~ii~V~D~s~~~s~~--~~~~~l~~l~~~~~ 97 (167)
T cd04161 38 LRLDKYEVCIFDLG-------GGAN-------FRGIWVNY----YAEAHGLVFVVDSSDDDRVQ--EVKEILRELLQHPR 97 (167)
T ss_pred EEECCEEEEEEECC-------CcHH-------HHHHHHHH----HcCCCEEEEEEECCchhHHH--HHHHHHHHHHcCcc
Confidence 45678899999999 7321 11112222 35889999999986433222 22334444443322
Q ss_pred -hcceEEEEEcCCCCCCCcccHHHhhh
Q 036659 102 -FDYMIVVFTGGDELEDNDETLEDYLG 127 (300)
Q Consensus 102 -~~y~IVlFT~gD~Le~~~~tledyl~ 127 (300)
...-|+|+-++-++.+. .+.++.+.
T Consensus 98 ~~~~piliv~NK~Dl~~~-~~~~~i~~ 123 (167)
T cd04161 98 VSGKPILVLANKQDKKNA-LLGADVIE 123 (167)
T ss_pred ccCCcEEEEEeCCCCcCC-CCHHHHHH
Confidence 22334455555556543 34444443
No 118
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=85.64 E-value=4.5 Score=36.54 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=44.5
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
+++++++|||| |.+ .++...+ ...+++|+|+.....++..+...+..+.. +| ...
T Consensus 81 ~~~~i~~vDtP-------g~~----------~~~l~~a----k~aDvVllviDa~~~~~~~~~~i~~~l~~-~g---~p~ 135 (225)
T cd01882 81 KKRRLTFIECP-------NDI----------NAMIDIA----KVADLVLLLIDASFGFEMETFEFLNILQV-HG---FPR 135 (225)
T ss_pred CCceEEEEeCC-------chH----------HHHHHHH----HhcCEEEEEEecCcCCCHHHHHHHHHHHH-cC---CCe
Confidence 68899999999 632 1222222 34579999999876778777666555543 23 234
Q ss_pred eEEEEEcCCCCCC
Q 036659 105 MIVVFTGGDELED 117 (300)
Q Consensus 105 ~IVlFT~gD~Le~ 117 (300)
.|+|+|.-|.+.+
T Consensus 136 vi~VvnK~D~~~~ 148 (225)
T cd01882 136 VMGVLTHLDLFKK 148 (225)
T ss_pred EEEEEeccccCCc
Confidence 5668898887643
No 119
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=85.58 E-value=17 Score=29.27 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.8
Q ss_pred CCCCeEEEEEEeCC
Q 036659 66 KDGIHAVLVVFSVR 79 (300)
Q Consensus 66 ~pGpHA~LLV~~v~ 79 (300)
..+.|++++|+.+.
T Consensus 71 ~~~~~~~i~v~d~~ 84 (163)
T cd01860 71 YRGAAAAIVVYDIT 84 (163)
T ss_pred hccCCEEEEEEECc
Confidence 34789999999986
No 120
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=85.56 E-value=11 Score=30.95 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=40.6
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y 104 (300)
...+.++||| |.-... .+. .....+.|++|+|+.+.++-|-++. ..++.+..+.+....+.
T Consensus 48 ~~~l~i~Dt~-------G~~~~~----~~~-------~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (165)
T cd04140 48 ICTLQITDTT-------GSHQFP----AMQ-------RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI 109 (165)
T ss_pred EEEEEEEECC-------CCCcch----HHH-------HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3467899999 653321 111 1123478999999999865555443 33455655555433333
Q ss_pred -eEEEEEcCCC
Q 036659 105 -MIVVFTGGDE 114 (300)
Q Consensus 105 -~IVlFT~gD~ 114 (300)
.|||.+.-|.
T Consensus 110 piilv~nK~Dl 120 (165)
T cd04140 110 PIMLVGNKCDE 120 (165)
T ss_pred CEEEEEECccc
Confidence 4555555553
No 121
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=85.36 E-value=15 Score=29.62 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=22.9
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS 80 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~ 80 (300)
..+.++||| |..... .....+ ..+.|++|+|+.+.+
T Consensus 49 ~~~~l~D~~-------g~~~~~-------~~~~~~----~~~~d~~i~v~d~~~ 84 (161)
T cd01863 49 VKLAIWDTA-------GQERFR-------TLTSSY----YRGAQGVILVYDVTR 84 (161)
T ss_pred EEEEEEECC-------Cchhhh-------hhhHHH----hCCCCEEEEEEECCC
Confidence 468899999 742211 111222 247899999999863
No 122
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=85.26 E-value=17 Score=31.89 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=26.3
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhhc-ceEEEEEcCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVFD-YMIVVFTGGDE 114 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~~-y~IVlFT~gD~ 114 (300)
..+.|++|+|+.+.++-|-+... -+..+....+..... -.|||.+--|-
T Consensus 71 ~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 35899999999987543333322 233344444322122 24556665553
No 123
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.05 E-value=3.7 Score=39.64 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=48.2
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccC----CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK 99 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~----~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~ 99 (300)
.++..+++|||| |.-.. .+....|+.+....+ +..||-.+||++... .. .++......+
T Consensus 194 ~~~~D~ViIDTa-------Gr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~--~~~~~a~~f~-- 256 (318)
T PRK10416 194 ARGIDVLIIDTA-------GRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQ--NALSQAKAFH-- 256 (318)
T ss_pred hCCCCEEEEeCC-------CCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---Ch--HHHHHHHHHH--
Confidence 356789999999 65443 234445666655433 457999999999862 22 2333333322
Q ss_pred hhhcceEEEEEcCCCCCC
Q 036659 100 NVFDYMIVVFTGGDELED 117 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~Le~ 117 (300)
+.....-+++|.-|+-..
T Consensus 257 ~~~~~~giIlTKlD~t~~ 274 (318)
T PRK10416 257 EAVGLTGIILTKLDGTAK 274 (318)
T ss_pred hhCCCCEEEEECCCCCCC
Confidence 234677899999886543
No 124
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=85.01 E-value=20 Score=30.21 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=25.0
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc--ceEEEEEcCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD--YMIVVFTGGD 113 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~--y~IVlFT~gD 113 (300)
..+.+++++|+.+.++-|-+ ....++..++....-+ -.|+|.|..|
T Consensus 70 ~~~ad~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iilVgnK~D 117 (170)
T cd04108 70 YRGAQAIIIVFDLTDVASLE--HTRQWLEDALKENDPSSVLLFLVGTKKD 117 (170)
T ss_pred hcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCeEEEEEEChh
Confidence 45899999999986322221 1223333343332222 2567777667
No 125
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=84.89 E-value=17 Score=30.82 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=27.7
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
..+.+|+|+|+.+.++-|-++.. .+..+....+.. ...||+.+.-|-.+
T Consensus 70 ~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~ 119 (188)
T cd04125 70 YRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVN 119 (188)
T ss_pred ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCcc
Confidence 45889999999987433322211 122333333332 34677778777543
No 126
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=84.42 E-value=25 Score=30.11 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=41.8
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...++..+.++||| |--. ..........+.|++|+|+.+.++-+-+ .+...+..++....
T Consensus 56 ~~~~~~~~~l~D~~-------G~~~-----------~~~~~~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~ 115 (182)
T PTZ00133 56 VEYKNLKFTMWDVG-------GQDK-----------LRPLWRHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDE 115 (182)
T ss_pred EEECCEEEEEEECC-------CCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHh
Confidence 34567889999999 6411 1111222345899999999986332212 12344555555433
Q ss_pred h--cceEEEEEcCCCCC
Q 036659 102 F--DYMIVVFTGGDELE 116 (300)
Q Consensus 102 ~--~y~IVlFT~gD~Le 116 (300)
. ...|||.+.-| +.
T Consensus 116 ~~~~piilv~NK~D-l~ 131 (182)
T PTZ00133 116 LRDAVLLVFANKQD-LP 131 (182)
T ss_pred hcCCCEEEEEeCCC-CC
Confidence 2 24566666555 54
No 127
>COG0218 Predicted GTPase [General function prediction only]
Probab=84.39 E-value=31 Score=32.05 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=56.9
Q ss_pred EEEEeCCCCcccCcccCCCCC-ChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEE
Q 036659 29 EKVIDTRWVRHAIARLFDFSA-GSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIV 107 (300)
Q Consensus 29 v~VIDTP~w~~~~~glfd~~~-~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IV 107 (300)
..+||-||. |+-..+. -.+..++.|...+.--.. +-++++++-.+..+++.|+..++++... ---.+|
T Consensus 72 ~~lVDlPGY-----GyAkv~k~~~e~w~~~i~~YL~~R~~-L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~v 140 (200)
T COG0218 72 LRLVDLPGY-----GYAKVPKEVKEKWKKLIEEYLEKRAN-LKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIV 140 (200)
T ss_pred EEEEeCCCc-----ccccCCHHHHHHHHHHHHHHHhhchh-heEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEE
Confidence 789999965 5433221 235666777777776555 8899999999866777799888887542 335789
Q ss_pred EEEcCCCCCC
Q 036659 108 VFTGGDELED 117 (300)
Q Consensus 108 lFT~gD~Le~ 117 (300)
|||-.|.+..
T Consensus 141 v~tK~DKi~~ 150 (200)
T COG0218 141 VLTKADKLKK 150 (200)
T ss_pred EEEccccCCh
Confidence 9999999986
No 128
>PRK13351 elongation factor G; Reviewed
Probab=84.31 E-value=8.2 Score=40.55 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=46.6
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..|++..+++|||| |..|+ ..+...++. +.+++++|+......+.+....+..+.. .|
T Consensus 68 ~~~~~~~i~liDtP-------G~~df-------~~~~~~~l~----~aD~~ilVvd~~~~~~~~~~~~~~~~~~-~~--- 125 (687)
T PRK13351 68 CDWDNHRINLIDTP-------GHIDF-------TGEVERSLR----VLDGAVVVFDAVTGVQPQTETVWRQADR-YG--- 125 (687)
T ss_pred EEECCEEEEEEECC-------CcHHH-------HHHHHHHHH----hCCEEEEEEeCCCCCCHHHHHHHHHHHh-cC---
Confidence 46789999999999 76542 234444443 5588999999876777666655544332 22
Q ss_pred hcceEEEEEcCCCCC
Q 036659 102 FDYMIVVFTGGDELE 116 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le 116 (300)
.-.+|+++.-|...
T Consensus 126 -~p~iiviNK~D~~~ 139 (687)
T PRK13351 126 -IPRLIFINKMDRVG 139 (687)
T ss_pred -CCEEEEEECCCCCC
Confidence 24566777767443
No 129
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=84.31 E-value=23 Score=29.54 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=40.5
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...++..+.++||| |...... .......+.+++++|+++..+-+-+ .+...+..++-...
T Consensus 38 ~~~~~~~i~l~Dt~-------G~~~~~~-----------~~~~~~~~ad~ii~V~D~s~~~s~~--~~~~~~~~~~~~~~ 97 (169)
T cd04158 38 VEYKNLKFTIWDVG-------GKHKLRP-----------LWKHYYLNTQAVVFVVDSSHRDRVS--EAHSELAKLLTEKE 97 (169)
T ss_pred EEECCEEEEEEECC-------CChhcch-----------HHHHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcChh
Confidence 34577899999999 7533211 1111124679999999986432222 23344555553322
Q ss_pred h-cceEEEEEcCCCCCC
Q 036659 102 F-DYMIVVFTGGDELED 117 (300)
Q Consensus 102 ~-~y~IVlFT~gD~Le~ 117 (300)
. +--|||+-++-++.+
T Consensus 98 ~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 98 LRDALLLIFANKQDVAG 114 (169)
T ss_pred hCCCCEEEEEeCcCccc
Confidence 2 223444444544643
No 130
>PRK12740 elongation factor G; Reviewed
Probab=84.14 E-value=8 Score=40.38 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=47.2
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|..+++|||| |..++ ..+...++. ..+++|+|+......+......+..+.. .|
T Consensus 55 ~~~~~~~i~liDtP-------G~~~~-------~~~~~~~l~----~aD~vllvvd~~~~~~~~~~~~~~~~~~-~~--- 112 (668)
T PRK12740 55 CEWKGHKINLIDTP-------GHVDF-------TGEVERALR----VLDGAVVVVCAVGGVEPQTETVWRQAEK-YG--- 112 (668)
T ss_pred EEECCEEEEEEECC-------CcHHH-------HHHHHHHHH----HhCeEEEEEeCCCCcCHHHHHHHHHHHH-cC---
Confidence 56789999999999 76442 234444443 6789999999876666665555544332 22
Q ss_pred hcceEEEEEcCCCCC
Q 036659 102 FDYMIVVFTGGDELE 116 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le 116 (300)
.-.||+++.-|...
T Consensus 113 -~p~iiv~NK~D~~~ 126 (668)
T PRK12740 113 -VPRIIFVNKMDRAG 126 (668)
T ss_pred -CCEEEEEECCCCCC
Confidence 24677888877554
No 131
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=84.01 E-value=23 Score=29.59 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=26.1
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF 82 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf 82 (300)
...+..+.++||| |--... . + ....-.+.|++|+|+....+.
T Consensus 40 ~~~~~~l~i~Dt~-------G~~~~~----~----~---~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 40 PTQDAIMELLEIG-------GSQNLR----K----Y---WKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred eeCCeEEEEEECC-------CCcchh----H----H---HHHHHhhCCEEEEEEECCCHH
Confidence 3456788999999 642211 0 1 111245889999999986433
No 132
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=83.70 E-value=7.9 Score=40.65 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=39.5
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..|+|..+++|||| |..|+ ..++.+++. ..+++|||+..........+..+..+.. .| +
T Consensus 59 v~~~~~kinlIDTP-------Gh~DF-------~~ev~~~l~----~aD~alLVVDa~~G~~~qT~~~l~~a~~-~~--i 117 (594)
T TIGR01394 59 IRYNGTKINIVDTP-------GHADF-------GGEVERVLG----MVDGVLLLVDASEGPMPQTRFVLKKALE-LG--L 117 (594)
T ss_pred EEECCEEEEEEECC-------CHHHH-------HHHHHHHHH----hCCEEEEEEeCCCCCcHHHHHHHHHHHH-CC--C
Confidence 56889999999999 75442 244555544 4467777777653333333333333322 22 1
Q ss_pred hcceEEEEEcCCC
Q 036659 102 FDYMIVVFTGGDE 114 (300)
Q Consensus 102 ~~y~IVlFT~gD~ 114 (300)
. .||+.+--|.
T Consensus 118 -p-~IVviNKiD~ 128 (594)
T TIGR01394 118 -K-PIVVINKIDR 128 (594)
T ss_pred -C-EEEEEECCCC
Confidence 2 3556665553
No 133
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=83.60 E-value=9.5 Score=33.56 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=42.1
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+++|||| |..+.. .+...++ .+.+++|+|+.+....+...+..+... ...+ ...
T Consensus 70 ~~~i~iiDtp-------G~~~f~-------~~~~~~~----~~aD~~llVvD~~~~~~~~~~~~~~~~---~~~~--~p~ 126 (213)
T cd04167 70 SYLFNIIDTP-------GHVNFM-------DEVAAAL----RLSDGVVLVVDVVEGVTSNTERLIRHA---ILEG--LPI 126 (213)
T ss_pred EEEEEEEECC-------CCcchH-------HHHHHHH----HhCCEEEEEEECCCCCCHHHHHHHHHH---HHcC--CCE
Confidence 4689999999 866531 2233333 367899999998755555544333322 2122 467
Q ss_pred EEEEEcCCCC
Q 036659 106 IVVFTGGDEL 115 (300)
Q Consensus 106 IVlFT~gD~L 115 (300)
+||++--|.+
T Consensus 127 iiviNK~D~~ 136 (213)
T cd04167 127 VLVINKIDRL 136 (213)
T ss_pred EEEEECcccC
Confidence 8888988865
No 134
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=83.60 E-value=16 Score=29.40 Aligned_cols=41 Identities=29% Similarity=0.282 Sum_probs=26.1
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR 81 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r 81 (300)
.++|. .+.++||| |..+... +......+.|++++|+.+..+
T Consensus 44 ~~~~~~~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~~~~~ilv~d~~~~ 86 (164)
T cd04145 44 EIDGQWAILDILDTA-------GQEEFSA-----------MREQYMRTGEGFLLVFSVTDR 86 (164)
T ss_pred EECCEEEEEEEEECC-------CCcchhH-----------HHHHHHhhCCEEEEEEECCCH
Confidence 45664 57789999 7543321 111223478999999998743
No 135
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=83.50 E-value=3.3 Score=43.21 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659 2 RSGVSSRRFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR 81 (300)
Q Consensus 2 ~s~~s~~~~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r 81 (300)
||=||| -+-|+.=-..-...++|++|.++||-|||+ .++...+.++-+..+--. ---|++++|+...-.
T Consensus 293 rsIVSp--v~GTTRDaiea~v~~~G~~v~L~DTAGiRe------~~~~~iE~~gI~rA~k~~---~~advi~~vvda~~~ 361 (531)
T KOG1191|consen 293 RSIVSP--VPGTTRDAIEAQVTVNGVPVRLSDTAGIRE------ESNDGIEALGIERARKRI---ERADVILLVVDAEES 361 (531)
T ss_pred ceEeCC--CCCcchhhheeEeecCCeEEEEEecccccc------ccCChhHHHhHHHHHHHH---hhcCEEEEEeccccc
Confidence 455666 333333333323568999999999998876 234455666555444222 246899999998444
Q ss_pred CCHHHHHHHHHHHH
Q 036659 82 FSQEEEAALHSWQT 95 (300)
Q Consensus 82 fT~EE~~al~~lq~ 95 (300)
-|.++-...+.+++
T Consensus 362 ~t~sd~~i~~~l~~ 375 (531)
T KOG1191|consen 362 DTESDLKIARILET 375 (531)
T ss_pred ccccchHHHHHHHH
Confidence 55666555555544
No 136
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=83.03 E-value=16 Score=30.97 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.3
Q ss_pred CCCCCeEEEEEEeCCC
Q 036659 65 AKDGIHAVLVVFSVRS 80 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~ 80 (300)
.-.+.|++|+|+.+.+
T Consensus 69 ~~~~~d~~ilv~d~~~ 84 (174)
T cd01871 69 SYPQTDVFLICFSLVS 84 (174)
T ss_pred hcCCCCEEEEEEECCC
Confidence 3458999999999974
No 137
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=82.37 E-value=3.3 Score=40.81 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=43.2
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH--HHHHHhch
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH--SWQTLFGK 99 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~--~lq~lFG~ 99 (300)
..+++..++++||| |-- ++ .+.+.. +..+.++++||+.+...-+.....+.+ .+...+|
T Consensus 80 ~~~~~~~i~iiDtp-------Gh~------~f-~~~~~~----~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~- 140 (426)
T TIGR00483 80 FETDKYEVTIVDCP-------GHR------DF-IKNMIT----GASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG- 140 (426)
T ss_pred EccCCeEEEEEECC-------CHH------HH-HHHHHh----hhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-
Confidence 34568899999999 721 22 223333 335789999999997552221112211 1233445
Q ss_pred hhhcceEEEEEcCCCC
Q 036659 100 NVFDYMIVVFTGGDEL 115 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~L 115 (300)
..++||+.+--|..
T Consensus 141 --~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 141 --INQLIVAINKMDSV 154 (426)
T ss_pred --CCeEEEEEEChhcc
Confidence 25788888887754
No 138
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.28 E-value=10 Score=38.86 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=60.2
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~p-GpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
++..+.||||| |....+ .....++.+.+....+ -||-++||++.... ...+..+...| ..+.
T Consensus 298 ~~~D~VLIDTa-------Gr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~-----~~~~~~~~~~f--~~~~ 360 (432)
T PRK12724 298 DGSELILIDTA-------GYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSS-----YHHTLTVLKAY--ESLN 360 (432)
T ss_pred CCCCEEEEeCC-------CCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC-----HHHHHHHHHHh--cCCC
Confidence 46688999999 765432 2444666666655443 37888999987622 23445556667 4567
Q ss_pred ceEEEEEcCCCCCCCcccHHHhhhhCCCcccc--ccccCCCchh
Q 036659 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLK--SSRLKVPYSI 145 (300)
Q Consensus 104 y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk--~~~~~~~~~~ 145 (300)
+.=++||-=|+-..- .++=..+.. .+.|+. .-+=+||..|
T Consensus 361 ~~glIlTKLDEt~~~-G~il~i~~~-~~lPI~ylt~GQ~VPeDi 402 (432)
T PRK12724 361 YRRILLTKLDEADFL-GSFLELADT-YSKSFTYLSVGQEVPFDI 402 (432)
T ss_pred CCEEEEEcccCCCCc-cHHHHHHHH-HCCCEEEEecCCCCCCCH
Confidence 788899988875433 244444433 123332 2222566655
No 139
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=82.27 E-value=24 Score=28.90 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=26.7
Q ss_pred eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659 22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR 81 (300)
Q Consensus 22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r 81 (300)
..++|.. +.++||| |...... . ....++ .+.|++++|+.+.++
T Consensus 40 ~~~~~~~~~~~i~D~~-------g~~~~~~--~----~~~~~~----~~~d~~i~v~d~~~~ 84 (165)
T cd04146 40 VTIDGEQVSLEILDTA-------GQQQADT--E----QLERSI----RWADGFVLVYSITDR 84 (165)
T ss_pred EEECCEEEEEEEEECC-------CCccccc--c----hHHHHH----HhCCEEEEEEECCCH
Confidence 4567764 6799999 6543111 0 122232 367999999999744
No 140
>PLN03118 Rab family protein; Provisional
Probab=82.24 E-value=29 Score=30.23 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=25.7
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS 83 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT 83 (300)
.++| ..+.++||| |.-... .-...+ ..+.|++|+|+.+..+-|
T Consensus 56 ~~~~~~~~l~l~Dt~-------G~~~~~-------~~~~~~----~~~~d~~vlv~D~~~~~s 100 (211)
T PLN03118 56 TVGGKRLKLTIWDTA-------GQERFR-------TLTSSY----YRNAQGIILVYDVTRRET 100 (211)
T ss_pred EECCEEEEEEEEECC-------CchhhH-------HHHHHH----HhcCCEEEEEEECCCHHH
Confidence 3455 467899999 632211 111112 347799999999874433
No 141
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=82.23 E-value=4 Score=36.55 Aligned_cols=75 Identities=19% Similarity=0.085 Sum_probs=46.9
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+.+|||| |.-. .......|+.+.+... .|+-++||++... .+++...+......|| .
T Consensus 82 ~~~D~vlIDT~-------Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~--~~~~~~~~~~~~~~~~-----~ 142 (196)
T PF00448_consen 82 KGYDLVLIDTA-------GRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATM--GQEDLEQALAFYEAFG-----I 142 (196)
T ss_dssp TTSSEEEEEE--------SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGG--GGHHHHHHHHHHHHSS-----T
T ss_pred cCCCEEEEecC-------Ccch---hhHHHHHHHHHHhhhc--CCccceEEEeccc--ChHHHHHHHHHhhccc-----C
Confidence 35679999999 6532 3345556777666544 7889999999862 3444444444444443 4
Q ss_pred eEEEEEcCCCCCCC
Q 036659 105 MIVVFTGGDELEDN 118 (300)
Q Consensus 105 ~IVlFT~gD~Le~~ 118 (300)
.=++||.=|+-..-
T Consensus 143 ~~lIlTKlDet~~~ 156 (196)
T PF00448_consen 143 DGLILTKLDETARL 156 (196)
T ss_dssp CEEEEESTTSSSTT
T ss_pred ceEEEEeecCCCCc
Confidence 55679998887654
No 142
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=81.62 E-value=37 Score=30.00 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=12.3
Q ss_pred CCCeEEEEEEeCCCC
Q 036659 67 DGIHAVLVVFSVRSR 81 (300)
Q Consensus 67 pGpHA~LLV~~v~~r 81 (300)
.+.|++|+|+.+.++
T Consensus 74 ~~~d~iilv~D~~~~ 88 (211)
T cd04111 74 RNSVGVLLVFDITNR 88 (211)
T ss_pred cCCcEEEEEEECCCH
Confidence 567999999999743
No 143
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=81.20 E-value=13 Score=31.20 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=41.5
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..+.++||| |.... ..+...+-.|.|++++|+.+..+-+- ..+.+.+..++....
T Consensus 54 ~~~~~~~~~l~D~~-------G~~~~-----------~~~~~~~~~~~d~vi~V~D~s~~~~~--~~~~~~l~~~~~~~~ 113 (174)
T cd04153 54 IVYKNIRFLMWDIG-------GQESL-----------RSSWNTYYTNTDAVILVIDSTDRERL--PLTKEELYKMLAHED 113 (174)
T ss_pred EEECCeEEEEEECC-------CCHHH-----------HHHHHHHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhchh
Confidence 45677899999999 75321 11122233589999999998633111 122344555554332
Q ss_pred h--cceEEEEEcCCC
Q 036659 102 F--DYMIVVFTGGDE 114 (300)
Q Consensus 102 ~--~y~IVlFT~gD~ 114 (300)
. .-.+|+.+--|.
T Consensus 114 ~~~~p~viv~NK~Dl 128 (174)
T cd04153 114 LRKAVLLVLANKQDL 128 (174)
T ss_pred hcCCCEEEEEECCCC
Confidence 2 235666666664
No 144
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=81.20 E-value=7 Score=42.57 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=47.1
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
++|.+.... ...++|+.++++||| |..++.. ...+ ...+.+++|||+.+......+....+
T Consensus 322 GIT~~iga~-~v~~~~~~ItfiDTP-------Ghe~F~~-------m~~r----ga~~aDiaILVVdAddGv~~qT~e~i 382 (787)
T PRK05306 322 GITQHIGAY-QVETNGGKITFLDTP-------GHEAFTA-------MRAR----GAQVTDIVVLVVAADDGVMPQTIEAI 382 (787)
T ss_pred ceeeeccEE-EEEECCEEEEEEECC-------CCccchh-------HHHh----hhhhCCEEEEEEECCCCCCHhHHHHH
Confidence 455544333 346779999999999 7544321 1122 34577899999998755555555555
Q ss_pred HHHHHHhchhhhcceEEEEEcCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
.... .+| --.||+++--|.
T Consensus 383 ~~a~-~~~----vPiIVviNKiDl 401 (787)
T PRK05306 383 NHAK-AAG----VPIIVAINKIDK 401 (787)
T ss_pred HHHH-hcC----CcEEEEEECccc
Confidence 4332 222 135666665564
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=81.10 E-value=6.9 Score=38.16 Aligned_cols=80 Identities=14% Similarity=0.028 Sum_probs=47.6
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
+|..+.++||| |+... .+.+.+ ..+..-.. ...+.+++|+|+.+....+.++...+..+....|.. -.-
T Consensus 235 ~~~~i~l~DT~-------G~~~~-l~~~li-e~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~-~~p 303 (351)
T TIGR03156 235 DGGEVLLTDTV-------GFIRD-LPHELV-AAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAE-DIP 303 (351)
T ss_pred CCceEEEEecC-------ccccc-CCHHHH-HHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccC-CCC
Confidence 68899999999 76431 122222 11222111 133678999999997666666655554444444431 235
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
+|+|++--|-.
T Consensus 304 iIlV~NK~Dl~ 314 (351)
T TIGR03156 304 QLLVYNKIDLL 314 (351)
T ss_pred EEEEEEeecCC
Confidence 78888877754
No 146
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=81.07 E-value=24 Score=28.83 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=25.2
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS 80 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~ 80 (300)
..++| ..+.++||| |- +........ ...+.+++|+|+.+.+
T Consensus 45 ~~~~~~~~~l~i~D~~-------G~-------~~~~~~~~~----~~~~~d~~llv~d~~~ 87 (165)
T cd01864 45 LEIEGKRVKLQIWDTA-------GQ-------ERFRTITQS----YYRSANGAIIAYDITR 87 (165)
T ss_pred EEECCEEEEEEEEECC-------Ch-------HHHHHHHHH----HhccCCEEEEEEECcC
Confidence 34566 367899999 62 111111222 2347799999999974
No 147
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=80.92 E-value=30 Score=28.55 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=39.1
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FD 103 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~ 103 (300)
.+..+.++||| |..... .. .... -.+.+++++|+.+.++-|-++. ...|...+.... -.
T Consensus 45 ~~~~~~i~Dt~-------G~~~~~---~~----~~~~----~~~ad~~ilv~d~~~~~s~~~~--~~~~~~~i~~~~~~~ 104 (166)
T cd01893 45 ERVPTTIVDTS-------SRPQDR---AN----LAAE----IRKANVICLVYSVDRPSTLERI--RTKWLPLIRRLGVKV 104 (166)
T ss_pred CeEEEEEEeCC-------Cchhhh---HH----Hhhh----cccCCEEEEEEECCCHHHHHHH--HHHHHHHHHHhCCCC
Confidence 34678899999 765421 11 1222 2578899999998743332221 112322222111 24
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
.++||.|.-|...
T Consensus 105 pviiv~nK~Dl~~ 117 (166)
T cd01893 105 PIILVGNKSDLRD 117 (166)
T ss_pred CEEEEEEchhccc
Confidence 5777778777544
No 148
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=80.63 E-value=11 Score=34.52 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=42.5
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+++|||| |.-+.. .+....+ .+.+++|||+.+....+.+.+..+..... .++ ..
T Consensus 72 ~~~i~iiDTP-------G~~~f~-------~~~~~~l----~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~~~--p~ 128 (222)
T cd01885 72 EYLINLIDSP-------GHVDFS-------SEVTAAL----RLCDGALVVVDAVEGVCVQTETVLRQALK---ERV--KP 128 (222)
T ss_pred ceEEEEECCC-------CccccH-------HHHHHHH----HhcCeeEEEEECCCCCCHHHHHHHHHHHH---cCC--CE
Confidence 6789999999 765532 2444444 36789999999886777766555544332 222 45
Q ss_pred EEEEEcCCCC
Q 036659 106 IVVFTGGDEL 115 (300)
Q Consensus 106 IVlFT~gD~L 115 (300)
||+.+--|.+
T Consensus 129 ilviNKiD~~ 138 (222)
T cd01885 129 VLVINKIDRL 138 (222)
T ss_pred EEEEECCCcc
Confidence 6666655643
No 149
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=80.54 E-value=8.5 Score=32.08 Aligned_cols=75 Identities=8% Similarity=0.040 Sum_probs=43.9
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN- 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~- 100 (300)
..+++..+.++||| |.... ......+ -.+.|++++|+.+..+-+-+ .....+..++...
T Consensus 53 ~~~~~~~l~l~D~~-------G~~~~-------~~~~~~~----~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~ 112 (173)
T cd04154 53 LEYEGYKLNIWDVG-------GQKTL-------RPYWRNY----FESTDALIWVVDSSDRLRLD--DCKRELKELLQEER 112 (173)
T ss_pred EEECCEEEEEEECC-------CCHHH-------HHHHHHH----hCCCCEEEEEEECCCHHHHH--HHHHHHHHHHhChh
Confidence 45678899999999 75321 1112222 34889999999987542222 2233445554322
Q ss_pred -hhcceEEEEEcCCCCC
Q 036659 101 -VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 -i~~y~IVlFT~gD~Le 116 (300)
.-...|||.|.-|..+
T Consensus 113 ~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 113 LAGATLLILANKQDLPG 129 (173)
T ss_pred hcCCCEEEEEECccccc
Confidence 1245677777777543
No 150
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=80.38 E-value=29 Score=28.06 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=36.8
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~y 104 (300)
...+.+.||| |... ........-...+++++|+.+..+.|-+ .+..|...+.... -.-
T Consensus 51 ~~~l~i~Dt~-------G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~~~~~~~~~p 109 (164)
T cd04101 51 TVELFIFDSA-------GQEL-----------YSDMVSNYWESPSVFILVYDVSNKASFE---NCSRWVNKVRTASKHMP 109 (164)
T ss_pred EEEEEEEECC-------CHHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHH---HHHHHHHHHHHhCCCCC
Confidence 3688899999 6311 1111122235789999999987443332 2222323322221 235
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
+|||.|.-|..
T Consensus 110 ~ilv~nK~Dl~ 120 (164)
T cd04101 110 GVLVGNKMDLA 120 (164)
T ss_pred EEEEEECcccc
Confidence 66777766643
No 151
>COG1084 Predicted GTPase [General function prediction only]
Probab=80.18 E-value=9.2 Score=38.19 Aligned_cols=91 Identities=22% Similarity=0.293 Sum_probs=56.6
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCCh-HHHHHHHHHhhccCCCCCeEEEEEEeCC--CCCCHHHHHH-HHHHHHHhc
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGS-KFVGKEIVTCIGMAKDGIHAVLVVFSVR--SRFSQEEEAA-LHSWQTLFG 98 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~-e~v~kEI~~ci~l~~pGpHA~LLV~~v~--~rfT~EE~~a-l~~lq~lFG 98 (300)
..++-++=||||| ||.|-..+. ..+.+.-.-.+..- .| +||++|... +-||-|++.. ++.+...|.
T Consensus 211 e~~~~R~QvIDTP-------GlLDRPl~ErN~IE~qAi~AL~hl-~~--~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~ 280 (346)
T COG1084 211 ERGYLRIQVIDTP-------GLLDRPLEERNEIERQAILALRHL-AG--VILFLFDPSETCGYSLEEQISLLEEIKELFK 280 (346)
T ss_pred ecCCceEEEecCC-------cccCCChHHhcHHHHHHHHHHHHh-cC--eEEEEEcCccccCCCHHHHHHHHHHHHHhcC
Confidence 4557799999999 999965432 23333322233221 23 566666554 4788888654 588999998
Q ss_pred hhhhcceEEEEEcCCCCCC-CcccHHHhhh
Q 036659 99 KNVFDYMIVVFTGGDELED-NDETLEDYLG 127 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le~-~~~tledyl~ 127 (300)
.-++||++--|-... .-+.++.++.
T Consensus 281 ----~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 281 ----APIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred ----CCeEEEEecccccchhHHHHHHHHHH
Confidence 467899998885522 1134555553
No 152
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=79.69 E-value=33 Score=28.22 Aligned_cols=15 Identities=7% Similarity=0.408 Sum_probs=12.7
Q ss_pred CCCCeEEEEEEeCCC
Q 036659 66 KDGIHAVLVVFSVRS 80 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~ 80 (300)
..+.|++|+|+.+.+
T Consensus 71 ~~~~~~~l~v~d~~~ 85 (165)
T cd01865 71 YRGAMGFILMYDITN 85 (165)
T ss_pred ccCCcEEEEEEECCC
Confidence 469999999999863
No 153
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=79.67 E-value=35 Score=28.50 Aligned_cols=67 Identities=16% Similarity=0.067 Sum_probs=35.6
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y 104 (300)
+..+.++||| |.-....-.+ ....+.||+++|+.+..+-|-+.. ..+..+....+ -..
T Consensus 48 ~~~l~i~Dt~-------G~~~~~~~~~-----------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p 106 (166)
T cd00877 48 KIRFNVWDTA-------GQEKFGGLRD-----------GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIP 106 (166)
T ss_pred EEEEEEEECC-------CChhhccccH-----------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCc
Confidence 4578899999 6432211101 113589999999998743333221 22333433332 234
Q ss_pred eEEEEEcCC
Q 036659 105 MIVVFTGGD 113 (300)
Q Consensus 105 ~IVlFT~gD 113 (300)
.|||.+.-|
T Consensus 107 iiiv~nK~D 115 (166)
T cd00877 107 IVLCGNKVD 115 (166)
T ss_pred EEEEEEchh
Confidence 455556555
No 154
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=79.66 E-value=67 Score=34.78 Aligned_cols=139 Identities=16% Similarity=0.065 Sum_probs=80.2
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
|||-.=..+ +-...|..+.+||.| |.++.+..+. .|.+.|--+....|++++-|+... .=|+. |
T Consensus 35 GvTVEkkeg-~~~~~~~~i~ivDLP-------G~YSL~~~S~---DE~Var~~ll~~~~D~ivnVvDAt----nLeRn-L 98 (653)
T COG0370 35 GVTVEKKEG-KLKYKGHEIEIVDLP-------GTYSLTAYSE---DEKVARDFLLEGKPDLIVNVVDAT----NLERN-L 98 (653)
T ss_pred CeeEEEEEE-EEEecCceEEEEeCC-------CcCCCCCCCc---hHHHHHHHHhcCCCCEEEEEcccc----hHHHH-H
Confidence 455444333 234678899999999 9998766432 234444444578899999999764 33333 2
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDN 170 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~ 170 (300)
-.-.+++-- -..||+.+.--|+.+..+-.++. +. |=+.-|=
T Consensus 99 yltlQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~-------~~------------------------------L~~~LGv 139 (653)
T COG0370 99 YLTLQLLEL--GIPMILALNMIDEAKKRGIRIDI-------EK------------------------------LSKLLGV 139 (653)
T ss_pred HHHHHHHHc--CCCeEEEeccHhhHHhcCCcccH-------HH------------------------------HHHHhCC
Confidence 222233222 23489998877766553222211 11 2223344
Q ss_pred eEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChH
Q 036659 171 RCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDD 211 (300)
Q Consensus 171 R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e 211 (300)
..+--.-+. ...+.+|+++|..+...+.. |+..+
T Consensus 140 PVv~tvA~~------g~G~~~l~~~i~~~~~~~~~-~~~~~ 173 (653)
T COG0370 140 PVVPTVAKR------GEGLEELKRAIIELAESKTT-PREVD 173 (653)
T ss_pred CEEEEEeec------CCCHHHHHHHHHHhcccccc-ccccc
Confidence 444433332 24688999999988887766 44433
No 155
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=79.50 E-value=29 Score=27.55 Aligned_cols=48 Identities=21% Similarity=0.050 Sum_probs=25.4
Q ss_pred CCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 68 GIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
+.|++++|+.+..+-|-++.. .+..+....+. .-.-+|||.|--|...
T Consensus 72 ~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~ 120 (162)
T cd04138 72 TGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAA 120 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 678999999987433322221 12222222211 1234677888777543
No 156
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=79.29 E-value=9.8 Score=30.62 Aligned_cols=72 Identities=8% Similarity=-0.034 Sum_probs=40.0
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh---
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN--- 100 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~--- 100 (300)
.++..+.++||| |-.... . .......+.+++++|+.+..+.+-+. +-..+..++...
T Consensus 42 ~~~~~~~l~Dt~-------G~~~~~-------~----~~~~~~~~~d~ii~v~D~~~~~~~~~--~~~~~~~~~~~~~~~ 101 (162)
T cd04157 42 KGNLSFTAFDMS-------GQGKYR-------G----LWEHYYKNIQGIIFVIDSSDRLRLVV--VKDELELLLNHPDIK 101 (162)
T ss_pred ECCEEEEEEECC-------CCHhhH-------H----HHHHHHccCCEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccc
Confidence 467889999999 743211 1 11122358899999999874433221 112233332211
Q ss_pred -hhcceEEEEEcCCCC
Q 036659 101 -VFDYMIVVFTGGDEL 115 (300)
Q Consensus 101 -i~~y~IVlFT~gD~L 115 (300)
.-.-.+||++--|-.
T Consensus 102 ~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 102 HRRVPILFFANKMDLP 117 (162)
T ss_pred cCCCCEEEEEeCcccc
Confidence 123577778877744
No 157
>PRK11058 GTPase HflX; Provisional
Probab=79.14 E-value=13 Score=37.46 Aligned_cols=82 Identities=13% Similarity=0.033 Sum_probs=49.2
Q ss_pred eeCC-EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 23 RIQV-VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 23 ~~~G-r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
.+.| ..+.++||| |+... .+.+-+ ..+..-+. ...+.+++|+|+.+..+.+.+....+..+..-.+..
T Consensus 240 ~l~~~~~~~l~DTa-------G~~r~-lp~~lv-e~f~~tl~-~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~- 308 (426)
T PRK11058 240 DVADVGETVLADTV-------GFIRH-LPHDLV-AAFKATLQ-ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH- 308 (426)
T ss_pred EeCCCCeEEEEecC-------ccccc-CCHHHH-HHHHHHHH-HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC-
Confidence 3444 488999999 87432 122222 22322211 235789999999997666666666555544444432
Q ss_pred hcceEEEEEcCCCC
Q 036659 102 FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 ~~y~IVlFT~gD~L 115 (300)
-.-+|+|++--|..
T Consensus 309 ~~pvIiV~NKiDL~ 322 (426)
T PRK11058 309 EIPTLLVMNKIDML 322 (426)
T ss_pred CCCEEEEEEcccCC
Confidence 23578888887854
No 158
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=79.08 E-value=14 Score=32.55 Aligned_cols=72 Identities=6% Similarity=0.060 Sum_probs=41.2
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh----
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV---- 101 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i---- 101 (300)
+..+.|+||| |-.. ....+...+. ..++++++|+... .+...-..+.+.+..+|-...
T Consensus 47 ~~~~~l~D~p-------G~~~-------~~~~~~~~~~---~~~~~vV~VvD~~-~~~~~~~~~~~~l~~il~~~~~~~~ 108 (203)
T cd04105 47 GKKFRLVDVP-------GHPK-------LRDKLLETLK---NSAKGIVFVVDSA-TFQKNLKDVAEFLYDILTDLEKVKN 108 (203)
T ss_pred CceEEEEECC-------CCHH-------HHHHHHHHHh---ccCCEEEEEEECc-cchhHHHHHHHHHHHHHHHHhhccC
Confidence 6789999999 6432 2233333322 2269999999987 554444455666666654322
Q ss_pred hcceEEEEEcCCCC
Q 036659 102 FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 ~~y~IVlFT~gD~L 115 (300)
-.-.+|+.+.-|..
T Consensus 109 ~~pvliv~NK~Dl~ 122 (203)
T cd04105 109 KIPVLIACNKQDLF 122 (203)
T ss_pred CCCEEEEecchhhc
Confidence 12345555555544
No 159
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=78.99 E-value=36 Score=28.25 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=12.8
Q ss_pred CCCCCeEEEEEEeCCC
Q 036659 65 AKDGIHAVLVVFSVRS 80 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~ 80 (300)
...+.|++++|+.+..
T Consensus 69 ~~~~~~~~i~v~d~~~ 84 (180)
T cd04137 69 YSIGIHGYILVYSVTS 84 (180)
T ss_pred HHhhCCEEEEEEECCC
Confidence 3458899999999874
No 160
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=78.92 E-value=30 Score=28.14 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=12.6
Q ss_pred CCCCeEEEEEEeCCCC
Q 036659 66 KDGIHAVLVVFSVRSR 81 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~r 81 (300)
..|.||+++|+.+.++
T Consensus 70 ~~~~d~~ilv~d~~~~ 85 (164)
T cd04175 70 MKNGQGFVLVYSITAQ 85 (164)
T ss_pred HhhCCEEEEEEECCCH
Confidence 3578999999998743
No 161
>PRK05433 GTP-binding protein LepA; Provisional
Probab=78.71 E-value=37 Score=35.76 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=40.2
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+++|||| |..|+. .++.+.+. +.+++|||+.+....+.+....+..+ ...++ ..
T Consensus 73 ~~~lnLiDTP-------Gh~dF~-------~~v~~sl~----~aD~aILVVDas~gv~~qt~~~~~~~---~~~~l--pi 129 (600)
T PRK05433 73 TYILNLIDTP-------GHVDFS-------YEVSRSLA----ACEGALLVVDASQGVEAQTLANVYLA---LENDL--EI 129 (600)
T ss_pred cEEEEEEECC-------CcHHHH-------HHHHHHHH----HCCEEEEEEECCCCCCHHHHHHHHHH---HHCCC--CE
Confidence 5689999999 876642 34555544 45688999998756665544443332 22221 35
Q ss_pred EEEEEcCCC
Q 036659 106 IVVFTGGDE 114 (300)
Q Consensus 106 IVlFT~gD~ 114 (300)
|++++--|.
T Consensus 130 IvViNKiDl 138 (600)
T PRK05433 130 IPVLNKIDL 138 (600)
T ss_pred EEEEECCCC
Confidence 666666663
No 162
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=78.59 E-value=24 Score=28.66 Aligned_cols=74 Identities=12% Similarity=0.019 Sum_probs=41.7
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..+.++||| |.-+.. ..... ...+.|++++|+.....-+ -..+...+..++....
T Consensus 45 ~~~~~~~~~l~Dt~-------G~~~~~-------~~~~~----~~~~~~~~v~vvd~~~~~~--~~~~~~~~~~~~~~~~ 104 (167)
T cd04160 45 IEVGNARLKFWDLG-------GQESLR-------SLWDK----YYAECHAIIYVIDSTDRER--FEESKSALEKVLRNEA 104 (167)
T ss_pred EEECCEEEEEEECC-------CChhhH-------HHHHH----HhCCCCEEEEEEECchHHH--HHHHHHHHHHHHhChh
Confidence 45678999999999 764321 11122 2358899999998762211 1223344444444321
Q ss_pred --hcceEEEEEcCCCC
Q 036659 102 --FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 --~~y~IVlFT~gD~L 115 (300)
-..+||+.+--|..
T Consensus 105 ~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 105 LEGVPLLILANKQDLP 120 (167)
T ss_pred hcCCCEEEEEEccccc
Confidence 12466666666643
No 163
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=78.28 E-value=22 Score=34.87 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=33.8
Q ss_pred CCCCccccCCCcee---eCCE--EEEEEeCCCCcccCcccCCCCCC---------------hHHHHHHHH--HhhccCCC
Q 036659 10 FGAPKTAPLPPTIR---IQVV--LEKVIDTRWVRHAIARLFDFSAG---------------SKFVGKEIV--TCIGMAKD 67 (300)
Q Consensus 10 ~~vT~tC~~~~t~~---~~Gr--~v~VIDTP~w~~~~~glfd~~~~---------------~e~v~kEI~--~ci~l~~p 67 (300)
-.+++|-+...... -+|. +++||||| |+-|.=.. +..+.+|+. +=-.+..-
T Consensus 82 ~p~pkT~eik~~thvieE~gVklkltviDTP-------GfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDT 154 (336)
T KOG1547|consen 82 EPIPKTTEIKSITHVIEEKGVKLKLTVIDTP-------GFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDT 154 (336)
T ss_pred CcccceEEEEeeeeeeeecceEEEEEEecCC-------CcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCc
Confidence 46777777654322 2344 68999999 55543221 234555543 22223344
Q ss_pred CCeEEEEEEeC
Q 036659 68 GIHAVLVVFSV 78 (300)
Q Consensus 68 GpHA~LLV~~v 78 (300)
.+|+.|..++.
T Consensus 155 RVHcclyFi~p 165 (336)
T KOG1547|consen 155 RVHCCLYFIPP 165 (336)
T ss_pred eEEEEEEEeCC
Confidence 66777766654
No 164
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=78.20 E-value=8.5 Score=31.26 Aligned_cols=70 Identities=21% Similarity=0.087 Sum_probs=39.2
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHHhchhhhcc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE--~~al~~lq~lFG~~i~~y 104 (300)
..+.++||| |.-+..... ....+..|++++|+....+-|-.+ ...+..+....+ -.-
T Consensus 48 ~~l~~~D~~-------g~~~~~~~~-----------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p 106 (171)
T cd00157 48 VNLGLWDTA-------GQEEYDRLR-----------PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVP 106 (171)
T ss_pred EEEEEEeCC-------Ccccccccc-----------hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCC
Confidence 368899999 644321110 112367899999999874332222 222223332222 356
Q ss_pred eEEEEEcCCCCCC
Q 036659 105 MIVVFTGGDELED 117 (300)
Q Consensus 105 ~IVlFT~gD~Le~ 117 (300)
++||++.-|-...
T Consensus 107 ~ivv~nK~Dl~~~ 119 (171)
T cd00157 107 IILVGTKIDLRDD 119 (171)
T ss_pred EEEEEccHHhhhc
Confidence 7888888885544
No 165
>PTZ00099 rab6; Provisional
Probab=78.07 E-value=28 Score=30.12 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=13.0
Q ss_pred CCCeEEEEEEeCCCC
Q 036659 67 DGIHAVLVVFSVRSR 81 (300)
Q Consensus 67 pGpHA~LLV~~v~~r 81 (300)
.|.+++|+|+++..+
T Consensus 51 ~~ad~~ilv~D~t~~ 65 (176)
T PTZ00099 51 RDSAAAIVVYDITNR 65 (176)
T ss_pred CCCcEEEEEEECCCH
Confidence 689999999999754
No 166
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=77.92 E-value=13 Score=31.21 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=47.5
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|..+.++||| |..+ ....... .-++.+++++|+.+...-+-+ .+...+..+++...
T Consensus 58 i~~~~~~~~l~D~~-------G~~~-------~~~~~~~----~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~ 117 (190)
T cd00879 58 LTIGNIKFKTFDLG-------GHEQ-------ARRLWKD----YFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEE 117 (190)
T ss_pred EEECCEEEEEEECC-------CCHH-------HHHHHHH----HhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCcc
Confidence 45788999999999 7322 1111222 235889999999986321111 23355666665332
Q ss_pred -h-cceEEEEEcCCCCCC-CcccHHHhhh
Q 036659 102 -F-DYMIVVFTGGDELED-NDETLEDYLG 127 (300)
Q Consensus 102 -~-~y~IVlFT~gD~Le~-~~~tledyl~ 127 (300)
. .-.||+++.-|.... ....+.++++
T Consensus 118 ~~~~pvivv~NK~Dl~~~~~~~~~~~~~~ 146 (190)
T cd00879 118 LANVPFLILGNKIDLPGAVSEEELRQALG 146 (190)
T ss_pred ccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence 2 346666676664322 1134455553
No 167
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=77.71 E-value=21 Score=34.88 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=53.2
Q ss_pred CChHHHHHHHHhhhhhHHHHhhhhhhhhHHHHHHHHHHHhHH-h-----------hcchHHHHHHHHHHHhcHHHHHHHH
Q 036659 208 YTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEE-Q-----------AAPLKVEEAAQLAQMKSNDEIRKLR 275 (300)
Q Consensus 208 yt~e~f~e~e~~~~~~v~~~~~~~~~~~l~~~~~lE~q~~~e-q-----------~a~le~e~~~~~~~~~~~~~i~~lr 275 (300)
-++.||++-.-.++.+.+.+.+...++-++-+..|++++.++ + .++.+-+.+++.++.+|+.++.-|.
T Consensus 35 lkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~lLk 114 (291)
T KOG4466|consen 35 LKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKKKLLK 114 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677766666666666655544445455555555554443 1 2234566678888889999888888
Q ss_pred HHH----HHHHHhHHHHHHHhh
Q 036659 276 ENL----ERAQRETEELRKRAE 293 (300)
Q Consensus 276 e~l----e~~~r~~~~~r~~~~ 293 (300)
++| |...|+.++.|-..+
T Consensus 115 e~l~seleeKkrkieeeR~smD 136 (291)
T KOG4466|consen 115 ENLISELEEKKRKIEEERLSMD 136 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 765 555666777765544
No 168
>PRK04213 GTP-binding protein; Provisional
Probab=77.64 E-value=21 Score=30.50 Aligned_cols=45 Identities=22% Similarity=0.090 Sum_probs=28.1
Q ss_pred EEEEEeCCCCcccCcccCCCCCCh----HHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGS----KFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~----e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
.+.++||| |+.+...-+ +.....+..++.-...+.+++++|+...
T Consensus 53 ~~~l~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~ 101 (201)
T PRK04213 53 DFILTDLP-------GFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGK 101 (201)
T ss_pred ceEEEeCC-------ccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCc
Confidence 68999999 764433322 3333333344443567888999998875
No 169
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=77.55 E-value=18 Score=30.03 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=27.2
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS 83 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT 83 (300)
.++| ..+.++||| |..+ ....+ ......++|++++|+.+..+-|
T Consensus 45 ~~~~~~~~~~i~Dt~-------G~~~-------~~~~~---~~~~~~~~d~~i~v~d~~~~~s 90 (170)
T cd04115 45 EIDGERIKVQLWDTA-------GQER-------FRKSM---VQHYYRNVHAVVFVYDVTNMAS 90 (170)
T ss_pred EECCeEEEEEEEeCC-------ChHH-------HHHhh---HHHhhcCCCEEEEEEECCCHHH
Confidence 3455 478899999 6321 11111 2233468999999999974333
No 170
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=77.42 E-value=13 Score=30.33 Aligned_cols=73 Identities=11% Similarity=0.006 Sum_probs=40.8
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV- 101 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i- 101 (300)
...+..+.++||| |..+.. .+. ..+..+.+++|+|+.+..+-+-. .+.+.+..++....
T Consensus 39 ~~~~~~~~i~Dt~-------G~~~~~--------~~~---~~~~~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~ 98 (158)
T cd04151 39 TYKNLKFQVWDLG-------GQTSIR--------PYW---RCYYSNTDAIIYVVDSTDRDRLG--TAKEELHAMLEEEEL 98 (158)
T ss_pred EECCEEEEEEECC-------CCHHHH--------HHH---HHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhh
Confidence 4567899999999 754321 111 11234899999999986322111 12334444443221
Q ss_pred -hcceEEEEEcCCCC
Q 036659 102 -FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 -~~y~IVlFT~gD~L 115 (300)
-.-+|||.+.-|-.
T Consensus 99 ~~~piiiv~nK~Dl~ 113 (158)
T cd04151 99 KGAVLLVFANKQDMP 113 (158)
T ss_pred cCCcEEEEEeCCCCC
Confidence 23567777776643
No 171
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=77.38 E-value=7.5 Score=39.13 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=41.1
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-C------CHHHHHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-F------SQEEEAALHSWQT 95 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-f------T~EE~~al~~lq~ 95 (300)
.++++.+++|||| |-. ++ .+++..++ .++++.|||+....- | ...-+..+.. ..
T Consensus 81 ~~~~~~i~lIDtP-------Gh~------~f-~~~~~~g~----~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~ 141 (446)
T PTZ00141 81 ETPKYYFTIIDAP-------GHR------DF-IKNMITGT----SQADVAILVVASTAGEFEAGISKDGQTREHALL-AF 141 (446)
T ss_pred ccCCeEEEEEECC-------ChH------HH-HHHHHHhh----hhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HH
Confidence 5679999999999 732 23 34444443 477888888887532 2 1122222222 22
Q ss_pred HhchhhhcceEEEEEcCC
Q 036659 96 LFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 96 lFG~~i~~y~IVlFT~gD 113 (300)
.+| ..+.||+.+--|
T Consensus 142 ~~g---i~~iiv~vNKmD 156 (446)
T PTZ00141 142 TLG---VKQMIVCINKMD 156 (446)
T ss_pred HcC---CCeEEEEEEccc
Confidence 233 357888888877
No 172
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=77.25 E-value=11 Score=32.65 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=40.8
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHHhc
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSWQTLFG 98 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a-l~~lq~lFG 98 (300)
..++| ..+.++||| |..+.+. +. .+...+.+++|+|+.+...-|-++-.. +..+.....
T Consensus 40 ~~~~~~~~~l~i~D~~-------G~~~~~~--------~~---~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~ 101 (198)
T cd04147 40 YEVGGVSLTLDILDTS-------GSYSFPA--------MR---KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE 101 (198)
T ss_pred EEECCEEEEEEEEECC-------CchhhhH--------HH---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 34566 578899999 7654321 11 123458899999999863333232211 122333222
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
.. -.-.||+.+.-|...
T Consensus 102 ~~-~~piilv~NK~Dl~~ 118 (198)
T cd04147 102 DK-FVPIVVVGNKADSLE 118 (198)
T ss_pred CC-CCcEEEEEEcccccc
Confidence 11 134677777666443
No 173
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=76.59 E-value=23 Score=29.84 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=43.7
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
..+..+.||||| |.... ......++...... .-|..+++|++..+ ..+....+..+...+|
T Consensus 80 ~~~~d~viiDt~-------g~~~~---~~~~l~~l~~l~~~--~~~~~~~lVv~~~~--~~~~~~~~~~~~~~~~----- 140 (173)
T cd03115 80 EENFDVVIVDTA-------GRLQI---DENLMEELKKIKRV--VKPDEVLLVVDAMT--GQDAVNQAKAFNEALG----- 140 (173)
T ss_pred hCCCCEEEEECc-------ccchh---hHHHHHHHHHHHhh--cCCCeEEEEEECCC--ChHHHHHHHHHHhhCC-----
Confidence 357789999999 64321 23444555444332 23788888998641 2222233333333333
Q ss_pred ceEEEEEcCCCCCCCc
Q 036659 104 YMIVVFTGGDELEDND 119 (300)
Q Consensus 104 y~IVlFT~gD~Le~~~ 119 (300)
..-|++|.-|.-...+
T Consensus 141 ~~~viltk~D~~~~~g 156 (173)
T cd03115 141 ITGVILTKLDGDARGG 156 (173)
T ss_pred CCEEEEECCcCCCCcc
Confidence 4677789888766543
No 174
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=76.58 E-value=39 Score=27.42 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh--cceEEEEEcCCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF--DYMIVVFTGGDE 114 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~--~y~IVlFT~gD~ 114 (300)
.+.+++++|+.+..+-|-++ +..+...+..... .-.+||.|.-|.
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 74 RGAVGALLVYDITKKQTFEN---VERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred CCCCEEEEEEECcCHHHHHH---HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 46799999999874333322 2222222222121 235566776663
No 175
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=76.21 E-value=42 Score=27.51 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=44.3
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...+|..+.++||| |.. .....+..++ .+.|++++|+.+...-+- ..+...+..++....
T Consensus 53 i~~~~~~~~~~D~~-------G~~-------~~~~~~~~~~----~~~~~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~ 112 (173)
T cd04155 53 VQSDGFKLNVWDIG-------GQR-------AIRPYWRNYF----ENTDCLIYVIDSADKKRL--EEAGAELVELLEEEK 112 (173)
T ss_pred EEECCEEEEEEECC-------CCH-------HHHHHHHHHh----cCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhChh
Confidence 45678999999999 642 2223334443 478999999988631111 122233333332211
Q ss_pred h--cceEEEEEcCCCCCCCcccHHHhh
Q 036659 102 F--DYMIVVFTGGDELEDNDETLEDYL 126 (300)
Q Consensus 102 ~--~y~IVlFT~gD~Le~~~~tledyl 126 (300)
. .-.+|+.+.-|.... ..++++.
T Consensus 113 ~~~~p~ivv~nK~D~~~~--~~~~~i~ 137 (173)
T cd04155 113 LAGVPVLVFANKQDLATA--APAEEIA 137 (173)
T ss_pred hcCCCEEEEEECCCCccC--CCHHHHH
Confidence 1 234556666665443 2455554
No 176
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=75.36 E-value=12 Score=29.83 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.6
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHH
Q 036659 259 AAQLAQMKSNDEIRKLRENLERA 281 (300)
Q Consensus 259 ~~~~~~~~~~~~i~~lre~le~~ 281 (300)
.-..++..|+++|..||.+||..
T Consensus 54 ~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 54 AHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 36678889999999999999864
No 177
>PTZ00416 elongation factor 2; Provisional
Probab=75.31 E-value=10 Score=41.22 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=45.9
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+++|||| |..|+ ..|+..++ .+.++.|+|+....-++...+..++.+... + ..+
T Consensus 91 ~~~i~liDtP-------G~~~f-------~~~~~~al----~~~D~ailVvda~~g~~~~t~~~~~~~~~~---~--~p~ 147 (836)
T PTZ00416 91 PFLINLIDSP-------GHVDF-------SSEVTAAL----RVTDGALVVVDCVEGVCVQTETVLRQALQE---R--IRP 147 (836)
T ss_pred ceEEEEEcCC-------CHHhH-------HHHHHHHH----hcCCeEEEEEECCCCcCccHHHHHHHHHHc---C--CCE
Confidence 6789999999 87652 24455554 467788888887767888777766655432 1 356
Q ss_pred EEEEEcCCCC
Q 036659 106 IVVFTGGDEL 115 (300)
Q Consensus 106 IVlFT~gD~L 115 (300)
||+++--|.+
T Consensus 148 iv~iNK~D~~ 157 (836)
T PTZ00416 148 VLFINKVDRA 157 (836)
T ss_pred EEEEEChhhh
Confidence 7777766765
No 178
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=75.23 E-value=45 Score=27.45 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=25.8
Q ss_pred CCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD 113 (300)
..+.|++|+|+.+..+.|-++ ...+..++... + -.-+|||.+--|
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~--~~p~ivv~nK~D 115 (161)
T cd04124 70 YHKAHACILVFDVTRKITYKNLSKWYEELREYR-P--EIPCIVVANKID 115 (161)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-C--CCcEEEEEECcc
Confidence 347799999999875555433 22333333321 1 135667777666
No 179
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=75.12 E-value=5.2 Score=41.99 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=54.5
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhcc--CCCC----------------CeEEEEEEeCCCCC
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGM--AKDG----------------IHAVLVVFSVRSRF 82 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l--~~pG----------------pHA~LLV~~v~~rf 82 (300)
...|+|.+|++|||| |=-|+...-+.+.+-+--|+.+ |..| .--+++|-+++ |-
T Consensus 62 av~~~~~~INIvDTP-------GHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiD-rp 133 (603)
T COG1217 62 AVNYNGTRINIVDTP-------GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKID-RP 133 (603)
T ss_pred eeecCCeEEEEecCC-------CcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCC-CC
Confidence 357999999999999 7777765555554443333322 3333 45677777887 77
Q ss_pred CHHHHHHHHHHHHHhch-----hhhcceEEEEE
Q 036659 83 SQEEEAALHSWQTLFGK-----NVFDYMIVVFT 110 (300)
Q Consensus 83 T~EE~~al~~lq~lFG~-----~i~~y~IVlFT 110 (300)
...=...+.....+|=. +-+++-||--.
T Consensus 134 ~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS 166 (603)
T COG1217 134 DARPDEVVDEVFDLFVELGATDEQLDFPIVYAS 166 (603)
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhCCCcEEEee
Confidence 77777788888888842 34677776543
No 180
>PRK10218 GTP-binding protein; Provisional
Probab=75.04 E-value=13 Score=39.16 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=30.7
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHH
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 92 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~ 92 (300)
..+++..+++|||| |.-|+. .++...+ .+.+++|||+.+........+..+..
T Consensus 63 i~~~~~~inliDTP-------G~~df~-------~~v~~~l----~~aDg~ILVVDa~~G~~~qt~~~l~~ 115 (607)
T PRK10218 63 IKWNDYRINIVDTP-------GHADFG-------GEVERVM----SMVDSVLLVVDAFDGPMPQTRFVTKK 115 (607)
T ss_pred EecCCEEEEEEECC-------CcchhH-------HHHHHHH----HhCCEEEEEEecccCccHHHHHHHHH
Confidence 35789999999999 543332 1222222 45667777777654444444444443
No 181
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=74.95 E-value=50 Score=27.85 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=31.4
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA 88 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~ 88 (300)
..++|. .+.++||| |..... ......-.|.|++++|+.+.++-|-+...
T Consensus 43 ~~~~~~~~~l~i~Dt~-------G~~~~~-----------~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~ 93 (172)
T cd04141 43 ARIDNEPALLDILDTA-------GQAEFT-----------AMRDQYMRCGEGFIICYSVTDRHSFQEAS 93 (172)
T ss_pred EEECCEEEEEEEEeCC-------CchhhH-----------HHhHHHhhcCCEEEEEEECCchhHHHHHH
Confidence 456674 57789999 753321 11122335789999999998776666544
No 182
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=74.72 E-value=42 Score=27.03 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=42.3
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN- 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~- 100 (300)
..+++..+.++||| |.-.. ..-...+ -.+.|++++|+.+...=+ -..+...+..++...
T Consensus 38 ~~~~~~~~~i~D~~-------G~~~~-------~~~~~~~----~~~~~~~i~v~D~~~~~~--~~~~~~~~~~~~~~~~ 97 (158)
T cd00878 38 VEYKNVSFTVWDVG-------GQDKI-------RPLWKHY----YENTNGIIFVVDSSDRER--IEEAKEELHKLLNEEE 97 (158)
T ss_pred EEECCEEEEEEECC-------CChhh-------HHHHHHH----hccCCEEEEEEECCCHHH--HHHHHHHHHHHHhCcc
Confidence 34567899999999 63221 1111222 246799999999863211 112333444444421
Q ss_pred -hhcceEEEEEcCCCCCC
Q 036659 101 -VFDYMIVVFTGGDELED 117 (300)
Q Consensus 101 -i~~y~IVlFT~gD~Le~ 117 (300)
.-.-.+|+.|.-|....
T Consensus 98 ~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 98 LKGVPLLIFANKQDLPGA 115 (158)
T ss_pred cCCCcEEEEeeccCCccc
Confidence 12356777888786654
No 183
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=74.47 E-value=38 Score=26.47 Aligned_cols=75 Identities=19% Similarity=0.030 Sum_probs=41.6
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV- 101 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i- 101 (300)
..++..+.++||| |... .......+ ..++|++++|+.+. ....- ..+...++.+.-...
T Consensus 40 ~~~~~~~~~~D~~-------g~~~-------~~~~~~~~----~~~~d~ii~v~d~~-~~~~~-~~~~~~~~~~~~~~~~ 99 (159)
T cd04159 40 TKGNVTLKVWDLG-------GQPR-------FRSMWERY----CRGVNAIVYVVDAA-DRTAL-EAAKNELHDLLEKPSL 99 (159)
T ss_pred EECCEEEEEEECC-------CCHh-------HHHHHHHH----HhcCCEEEEEEECC-CHHHH-HHHHHHHHHHHcChhh
Confidence 3456789999999 6321 11222233 35789999999886 32211 122234444433211
Q ss_pred -hcceEEEEEcCCCCCC
Q 036659 102 -FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 -~~y~IVlFT~gD~Le~ 117 (300)
-.-.+||+|.-|....
T Consensus 100 ~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 100 EGIPLLVLGNKNDLPGA 116 (159)
T ss_pred cCCCEEEEEeCccccCC
Confidence 1246788888885543
No 184
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=74.45 E-value=40 Score=28.24 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=25.4
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHH--HHHHHHHHhchhhhcceEEEEEcCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEEA--ALHSWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~~--al~~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
..+.|++++|+.+.++-|-++.. -+..+. .+.++ .-.|||.|.-|-
T Consensus 70 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~--~piilv~nK~Dl 117 (187)
T cd04132 70 YPDVDVLLICYAVDNPTSLDNVEDKWFPEVN-HFCPG--TPIMLVGLKTDL 117 (187)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-HhCCC--CCEEEEEeChhh
Confidence 35889999999997544433321 112222 12222 245777776663
No 185
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=73.94 E-value=45 Score=26.85 Aligned_cols=69 Identities=7% Similarity=-0.018 Sum_probs=37.1
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--hc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--FD 103 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~~ 103 (300)
+..+.++||| |.... .......-.+.|++++|+......+-. .+...+..++-... -.
T Consensus 43 ~~~l~i~D~~-------G~~~~-----------~~~~~~~~~~~~~iv~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~ 102 (160)
T cd04156 43 HLSLTVWDVG-------GQEKM-----------RTVWKCYLENTDGLVYVVDSSDEARLD--ESQKELKHILKNEHIKGV 102 (160)
T ss_pred ceEEEEEECC-------CCHhH-----------HHHHHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHhchhhcCC
Confidence 4689999999 75321 111111234779999999987433222 22233444443221 13
Q ss_pred ceEEEEEcCCC
Q 036659 104 YMIVVFTGGDE 114 (300)
Q Consensus 104 y~IVlFT~gD~ 114 (300)
-.+||.+--|.
T Consensus 103 piilv~nK~Dl 113 (160)
T cd04156 103 PVVLLANKQDL 113 (160)
T ss_pred CEEEEEECccc
Confidence 45677776664
No 186
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=73.92 E-value=31 Score=29.18 Aligned_cols=78 Identities=21% Similarity=0.193 Sum_probs=43.4
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFD 103 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~ 103 (300)
+...+.||||| +-++. ....++. ..+.+|+|++.. .++-.+- .+++.++ -.|. .
T Consensus 91 ~~~d~viiDtp-------p~~~~---------~~~~~l~----~aD~vliv~~~~-~~~~~~~~~~~~~l~-~~~~---~ 145 (179)
T cd03110 91 EGAELIIIDGP-------PGIGC---------PVIASLT----GADAALLVTEPT-PSGLHDLERAVELVR-HFGI---P 145 (179)
T ss_pred cCCCEEEEECc-------CCCcH---------HHHHHHH----cCCEEEEEecCC-cccHHHHHHHHHHHH-HcCC---C
Confidence 46689999999 44321 1222332 345788888887 6666653 3333333 3342 2
Q ss_pred ceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 104 YMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 104 y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
..+|+++-|.-......+.+|+..
T Consensus 146 -~~vV~N~~~~~~~~~~~~~~~~~~ 169 (179)
T cd03110 146 -VGVVINKYDLNDEIAEEIEDYCEE 169 (179)
T ss_pred -EEEEEeCCCCCcchHHHHHHHHHH
Confidence 457888766433222346666654
No 187
>PRK07560 elongation factor EF-2; Reviewed
Probab=73.58 E-value=13 Score=39.64 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=43.8
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+++|||| |..|+ ..++.+++. +.+++|+|+......+.+.+..+...... |. -
T Consensus 85 ~~~~i~liDtP-------G~~df-------~~~~~~~l~----~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~ 141 (731)
T PRK07560 85 KEYLINLIDTP-------GHVDF-------GGDVTRAMR----AVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----K 141 (731)
T ss_pred CcEEEEEEcCC-------CccCh-------HHHHHHHHH----hcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----C
Confidence 47889999999 87774 246666664 55888899987756776666666554332 32 2
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
.||+.+--|..
T Consensus 142 ~iv~iNK~D~~ 152 (731)
T PRK07560 142 PVLFINKVDRL 152 (731)
T ss_pred eEEEEECchhh
Confidence 45555544543
No 188
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.05 E-value=25 Score=36.19 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=46.7
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+.+|||| |--. .......|+.+-+.. ..||.++||++.. ... ..+..+...|.. ....
T Consensus 320 ~~DvVLIDTa-------GRs~---kd~~lm~EL~~~lk~--~~PdevlLVLsAT--tk~---~d~~~i~~~F~~--~~id 380 (436)
T PRK11889 320 RVDYILIDTA-------GKNY---RASETVEEMIETMGQ--VEPDYICLTLSAS--MKS---KDMIEIITNFKD--IHID 380 (436)
T ss_pred CCCEEEEeCc-------cccC---cCHHHHHHHHHHHhh--cCCCeEEEEECCc--cCh---HHHHHHHHHhcC--CCCC
Confidence 4689999999 6533 223445666665543 3578999998864 222 222345556665 6777
Q ss_pred EEEEEcCCCCCC
Q 036659 106 IVVFTGGDELED 117 (300)
Q Consensus 106 IVlFT~gD~Le~ 117 (300)
=++||-=|+-..
T Consensus 381 glI~TKLDET~k 392 (436)
T PRK11889 381 GIVFTKFDETAS 392 (436)
T ss_pred EEEEEcccCCCC
Confidence 889998887654
No 189
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.26 E-value=14 Score=37.56 Aligned_cols=74 Identities=15% Similarity=0.016 Sum_probs=47.2
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+++|||| |... ..+....|+....... .||.++||++.+ .+..+ +.+.+ ..|. ....
T Consensus 284 ~~~D~VLIDTA-------Gr~~---~d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~~d--~~~i~-~~f~--~l~i 344 (407)
T PRK12726 284 NCVDHILIDTV-------GRNY---LAEESVSEISAYTDVV--HPDLTCFTFSSG--MKSAD--VMTIL-PKLA--EIPI 344 (407)
T ss_pred CCCCEEEEECC-------CCCc---cCHHHHHHHHHHhhcc--CCceEEEECCCc--ccHHH--HHHHH-HhcC--cCCC
Confidence 46789999999 6533 2255567777766554 568888888764 23333 33333 3365 4667
Q ss_pred eEEEEEcCCCCCC
Q 036659 105 MIVVFTGGDELED 117 (300)
Q Consensus 105 ~IVlFT~gD~Le~ 117 (300)
.-++||-=|+-..
T Consensus 345 ~glI~TKLDET~~ 357 (407)
T PRK12726 345 DGFIITKMDETTR 357 (407)
T ss_pred CEEEEEcccCCCC
Confidence 7888998776543
No 190
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=72.18 E-value=20 Score=29.69 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=23.0
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS 80 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~ 80 (300)
..+.++||| |. +....-... ...+.+++|+|+.+.+
T Consensus 53 ~~~~i~Dt~-------G~-------~~~~~~~~~----~~~~~d~il~v~d~~~ 88 (168)
T cd01866 53 IKLQIWDTA-------GQ-------ESFRSITRS----YYRGAAGALLVYDITR 88 (168)
T ss_pred EEEEEEECC-------Cc-------HHHHHHHHH----HhccCCEEEEEEECCC
Confidence 478899999 62 121111222 2357899999999873
No 191
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.23 E-value=19 Score=36.73 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=47.5
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+++|||| |-.. ..+....|+.+..... .||.++||+... .-++....+ ..|-+ ....
T Consensus 181 ~~~DvViIDTa-------Gr~~---~d~~lm~El~~i~~~~--~p~e~lLVlda~--~Gq~a~~~a----~~F~~-~~~~ 241 (429)
T TIGR01425 181 ENFDIIIVDTS-------GRHK---QEDSLFEEMLQVAEAI--QPDNIIFVMDGS--IGQAAEAQA----KAFKD-SVDV 241 (429)
T ss_pred CCCCEEEEECC-------CCCc---chHHHHHHHHHHhhhc--CCcEEEEEeccc--cChhHHHHH----HHHHh-ccCC
Confidence 47799999999 7543 3356778888877554 578999999864 223333333 44432 3467
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
+-|+||-=|.-.
T Consensus 242 ~g~IlTKlD~~a 253 (429)
T TIGR01425 242 GSVIITKLDGHA 253 (429)
T ss_pred cEEEEECccCCC
Confidence 888999766543
No 192
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=71.11 E-value=6.6 Score=36.24 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=40.9
Q ss_pred ccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc-----eEEEEEcCCCC
Q 036659 43 RLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY-----MIVVFTGGDEL 115 (300)
Q Consensus 43 glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y-----~IVlFT~gD~L 115 (300)
|||||. +.++-.+ +. -||.|..++||++|++.++.|=+. +.+-.=+++..| +|+|.|..|-.
T Consensus 56 ~LwDTA-GqedYDr-lR---plsY~~tdvfl~cfsv~~p~S~~n------v~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 56 GLWDTA-GQEDYDR-LR---PLSYPQTDVFLLCFSVVSPESFEN------VKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred eeeecC-CCccccc-cc---ccCCCCCCEEEEEEEcCChhhHHH------HHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 899987 5554433 22 469999999999999986655443 222222244444 58888887744
No 193
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=71.02 E-value=56 Score=26.65 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=11.9
Q ss_pred CCCeEEEEEEeCCC
Q 036659 67 DGIHAVLVVFSVRS 80 (300)
Q Consensus 67 pGpHA~LLV~~v~~ 80 (300)
.+.+++|+|+.+.+
T Consensus 73 ~~~~~ii~v~d~~~ 86 (166)
T cd01869 73 RGAHGIIIVYDVTD 86 (166)
T ss_pred CcCCEEEEEEECcC
Confidence 47899999999873
No 194
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=70.69 E-value=6.2 Score=41.99 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=50.6
Q ss_pred CCCCCCccccCCCceeeCC---EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccC---------CCCC------
Q 036659 8 RRFGAPKTAPLPPTIRIQV---VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMA---------KDGI------ 69 (300)
Q Consensus 8 ~~~~vT~tC~~~~t~~~~G---r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~---------~pGp------ 69 (300)
|-.|+|-..|..+ +.+.+ -.+++|||| |=-|++. |+.+.+.+| ..||
T Consensus 104 RERGITIkaQtas-ify~~~~~ylLNLIDTP-------GHvDFs~-------EVsRslaac~G~lLvVDA~qGvqAQT~a 168 (650)
T KOG0462|consen 104 RERGITIKAQTAS-IFYKDGQSYLLNLIDTP-------GHVDFSG-------EVSRSLAACDGALLVVDASQGVQAQTVA 168 (650)
T ss_pred hhcCcEEEeeeeE-EEEEcCCceEEEeecCC-------Ccccccc-------eehehhhhcCceEEEEEcCcCchHHHHH
Confidence 3456777777664 55655 799999999 7777764 333333332 2233
Q ss_pred ----------eEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 70 ----------HAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 70 ----------HA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
-.|.|+-+++ +-+..=+.....+..+|+-.--
T Consensus 169 nf~lAfe~~L~iIpVlNKID-lp~adpe~V~~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 169 NFYLAFEAGLAIIPVLNKID-LPSADPERVENQLFELFDIPPA 210 (650)
T ss_pred HHHHHHHcCCeEEEeeeccC-CCCCCHHHHHHHHHHHhcCCcc
Confidence 3344444555 7777777888889999987544
No 195
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=70.19 E-value=68 Score=27.28 Aligned_cols=72 Identities=11% Similarity=-0.043 Sum_probs=37.6
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFD 103 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~ 103 (300)
.+..+.++||| |.- ....-...+ ..+.+++|+|+.+.+.-+-++ ...+..+...... .-.
T Consensus 50 ~~~~l~l~Dt~-------G~~-------~~~~~~~~~----~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~ 110 (183)
T cd04152 50 KGITFHFWDVG-------GQE-------KLRPLWKSY----TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGV 110 (183)
T ss_pred CceEEEEEECC-------CcH-------hHHHHHHHH----hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCC
Confidence 46789999999 741 111111222 357889999999863211111 1112222222221 123
Q ss_pred ceEEEEEcCCCC
Q 036659 104 YMIVVFTGGDEL 115 (300)
Q Consensus 104 y~IVlFT~gD~L 115 (300)
-++||+|--|..
T Consensus 111 p~iiv~NK~D~~ 122 (183)
T cd04152 111 PVLVLANKQDLP 122 (183)
T ss_pred cEEEEEECcCcc
Confidence 577888877754
No 196
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=70.19 E-value=18 Score=36.77 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=47.6
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+++|||| |.... .+....|+..-..+. .||-+|||++.... ..++...+. |.+. ...+
T Consensus 175 ~~DvVIIDTA-------Gr~~~---d~~lm~El~~l~~~~--~pdevlLVvda~~g-----q~av~~a~~-F~~~-l~i~ 235 (437)
T PRK00771 175 KADVIIVDTA-------GRHAL---EEDLIEEMKEIKEAV--KPDEVLLVIDATIG-----QQAKNQAKA-FHEA-VGIG 235 (437)
T ss_pred cCCEEEEECC-------Ccccc---hHHHHHHHHHHHHHh--cccceeEEEecccc-----HHHHHHHHH-HHhc-CCCC
Confidence 4489999999 65432 456667777765554 46788899987532 356666554 7664 4567
Q ss_pred EEEEEcCCCC
Q 036659 106 IVVFTGGDEL 115 (300)
Q Consensus 106 IVlFT~gD~L 115 (300)
-||||-=|.-
T Consensus 236 gvIlTKlD~~ 245 (437)
T PRK00771 236 GIIITKLDGT 245 (437)
T ss_pred EEEEecccCC
Confidence 7888977754
No 197
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=69.99 E-value=57 Score=34.33 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=39.7
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI 106 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I 106 (300)
..++++||| |.-|+ ..++.+.+. +.+++|||+.+....+.+....+..+.. .++ ..|
T Consensus 70 ~~l~liDTP-------G~~dF-------~~~v~~~l~----~aD~aILVvDat~g~~~qt~~~~~~~~~---~~i--piI 126 (595)
T TIGR01393 70 YVLNLIDTP-------GHVDF-------SYEVSRSLA----ACEGALLLVDAAQGIEAQTLANVYLALE---NDL--EII 126 (595)
T ss_pred EEEEEEECC-------CcHHH-------HHHHHHHHH----hCCEEEEEecCCCCCCHhHHHHHHHHHH---cCC--CEE
Confidence 678999999 77653 234444443 5689999999876666655444333322 221 355
Q ss_pred EEEEcCCCCC
Q 036659 107 VVFTGGDELE 116 (300)
Q Consensus 107 VlFT~gD~Le 116 (300)
++.+--| +.
T Consensus 127 iViNKiD-l~ 135 (595)
T TIGR01393 127 PVINKID-LP 135 (595)
T ss_pred EEEECcC-CC
Confidence 6666555 54
No 198
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=69.97 E-value=11 Score=40.10 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=42.5
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.+++..+++|||| |..|+. .++...+ ...+++|+|+.+..-.+.+....+..+. ..+
T Consensus 82 ~~~~~~i~liDTP-------G~~~f~-------~~~~~al----~~aD~~llVvda~~g~~~~t~~~~~~~~---~~~-- 138 (720)
T TIGR00490 82 EGNEYLINLIDTP-------GHVDFG-------GDVTRAM----RAVDGAIVVVCAVEGVMPQTETVLRQAL---KEN-- 138 (720)
T ss_pred cCCceEEEEEeCC-------CccccH-------HHHHHHH----HhcCEEEEEEecCCCCCccHHHHHHHHH---HcC--
Confidence 4578899999999 887643 2333433 3668999999886555555554444322 122
Q ss_pred cceEEEEEcCCCC
Q 036659 103 DYMIVVFTGGDEL 115 (300)
Q Consensus 103 ~y~IVlFT~gD~L 115 (300)
...||+.+--|..
T Consensus 139 ~p~ivviNKiD~~ 151 (720)
T TIGR00490 139 VKPVLFINKVDRL 151 (720)
T ss_pred CCEEEEEEChhcc
Confidence 1335666655544
No 199
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=69.90 E-value=92 Score=28.69 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=27.9
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHH
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQE 85 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~E 85 (300)
.++| ..+.++||| |.-+... +. .+...+.|+||||+++.++-|-+
T Consensus 42 ~i~~~~~~l~I~Dt~-------G~~~~~~--------~~---~~~~~~ad~iIlVfdv~~~~Sf~ 88 (247)
T cd04143 42 SIRGEVYQLDILDTS-------GNHPFPA--------MR---RLSILTGDVFILVFSLDNRESFE 88 (247)
T ss_pred EECCEEEEEEEEECC-------CChhhhH--------HH---HHHhccCCEEEEEEeCCCHHHHH
Confidence 4566 467799999 7543221 11 11234779999999998554433
No 200
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=69.82 E-value=55 Score=26.11 Aligned_cols=70 Identities=17% Similarity=0.071 Sum_probs=36.5
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch--hhhcc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK--NVFDY 104 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~--~i~~y 104 (300)
..+.++||| |-.+. ......++ -+.+++++|+.+...-|- .....++..+... ..-.-
T Consensus 48 ~~~~i~D~~-------g~~~~-------~~~~~~~~----~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p 107 (164)
T cd04139 48 VQLNILDTA-------GQEDY-------AAIRDNYH----RSGEGFLLVFSITDMESF--TATAEFREQILRVKDDDNVP 107 (164)
T ss_pred EEEEEEECC-------Chhhh-------hHHHHHHh----hcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCC
Confidence 468899999 74332 12222233 366899999987632111 1122222222222 12245
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
++||++--|...
T Consensus 108 iiiv~NK~D~~~ 119 (164)
T cd04139 108 LLLVGNKCDLED 119 (164)
T ss_pred EEEEEEcccccc
Confidence 788888777544
No 201
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=69.04 E-value=18 Score=30.09 Aligned_cols=72 Identities=18% Similarity=0.050 Sum_probs=39.8
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhc
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFG 98 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG 98 (300)
.++| ..+.++||| |.-.... -..++..+.|++|+|+.+.++-|-+.. ..+..++...
T Consensus 42 ~~~~~~~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~- 102 (173)
T cd04130 42 LVDGKPVRLQLCDTA-------GQDEFDK-----------LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN- 102 (173)
T ss_pred EECCEEEEEEEEECC-------CChhhcc-----------ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-
Confidence 4555 467789999 6422111 012344588999999998755443332 2333333321
Q ss_pred hhhhcceEEEEEcCCCC
Q 036659 99 KNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~L 115 (300)
+ -.-+||+-|.-|..
T Consensus 103 ~--~~piilv~nK~Dl~ 117 (173)
T cd04130 103 P--KAPIILVGTQADLR 117 (173)
T ss_pred C--CCCEEEEeeChhhc
Confidence 1 13567777777743
No 202
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=68.71 E-value=29 Score=29.32 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=42.6
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...++..+.+.||| |.-.. ..-...+ ..+.+++|+|+.+..+-|-+ .+.+.+..++....
T Consensus 52 ~~~~~~~l~l~D~~-------G~~~~-------~~~~~~~----~~~ad~ii~v~D~t~~~s~~--~~~~~l~~~~~~~~ 111 (175)
T smart00177 52 VTYKNISFTVWDVG-------GQDKI-------RPLWRHY----YTNTQGLIFVVDSNDRDRID--EAREELHRMLNEDE 111 (175)
T ss_pred EEECCEEEEEEECC-------CChhh-------HHHHHHH----hCCCCEEEEEEECCCHHHHH--HHHHHHHHHhhCHh
Confidence 34667889999999 74221 1111222 35889999999987443322 34456666665433
Q ss_pred hc--ceEEEEEcCCCCCC
Q 036659 102 FD--YMIVVFTGGDELED 117 (300)
Q Consensus 102 ~~--y~IVlFT~gD~Le~ 117 (300)
.. -.+||.+--| |.+
T Consensus 112 ~~~~piilv~NK~D-l~~ 128 (175)
T smart00177 112 LRDAVILVFANKQD-LPD 128 (175)
T ss_pred hcCCcEEEEEeCcC-ccc
Confidence 32 2445555444 543
No 203
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=68.54 E-value=29 Score=31.65 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=15.2
Q ss_pred cCCCCCeEEEEEEeCCCC
Q 036659 64 MAKDGIHAVLVVFSVRSR 81 (300)
Q Consensus 64 l~~pGpHA~LLV~~v~~r 81 (300)
++.++.|+||+|+++..+
T Consensus 68 ~~~~~~d~illvfdis~~ 85 (222)
T cd04173 68 LAYPDSDAVLICFDISRP 85 (222)
T ss_pred HhccCCCEEEEEEECCCH
Confidence 467899999999999844
No 204
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=68.45 E-value=61 Score=27.65 Aligned_cols=72 Identities=6% Similarity=0.023 Sum_probs=39.6
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..+.++||| |.... ... .....++.|++++|+....+ .. -..+...+..++....
T Consensus 56 ~~~~~~~~~~~D~~-------G~~~~----~~~-------~~~~~~~ad~ii~vvD~~~~-~~-~~~~~~~l~~l~~~~~ 115 (184)
T smart00178 56 LAIGNIKFTTFDLG-------GHQQA----RRL-------WKDYFPEVNGIVYLVDAYDK-ER-FAESKRELDALLSDEE 115 (184)
T ss_pred EEECCEEEEEEECC-------CCHHH----HHH-------HHHHhCCCCEEEEEEECCcH-HH-HHHHHHHHHHHHcChh
Confidence 34678899999999 74321 111 11234689999999998632 11 1223334455554322
Q ss_pred h-c-ceEEEEEcCC
Q 036659 102 F-D-YMIVVFTGGD 113 (300)
Q Consensus 102 ~-~-y~IVlFT~gD 113 (300)
. . -.+||.+.-|
T Consensus 116 ~~~~piliv~NK~D 129 (184)
T smart00178 116 LATVPFLILGNKID 129 (184)
T ss_pred hcCCCEEEEEeCcc
Confidence 2 2 3555556555
No 205
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=68.38 E-value=66 Score=26.47 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-h-cceEEEEEcCCCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-F-DYMIVVFTGGDEL 115 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~-~y~IVlFT~gD~L 115 (300)
.+.|++++|+.+..+-| -..+..+...+.... - .-++||-|--|-.
T Consensus 74 ~~ad~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 74 RGAMGIILVYDITDEKS---FENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred CCCCEEEEEEECcCHHH---HHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 47799999999864322 222333333332211 1 2356666655543
No 206
>COG3596 Predicted GTPase [General function prediction only]
Probab=68.34 E-value=16 Score=35.91 Aligned_cols=81 Identities=16% Similarity=-0.011 Sum_probs=55.0
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
..+|..+++.||| |+=|..........-+.. --|-...+|++++.++|+=.-+..-+.-+.. ...-
T Consensus 83 ~~~~~~l~lwDtP-------G~gdg~~~D~~~r~~~~d----~l~~~DLvL~l~~~~draL~~d~~f~~dVi~---~~~~ 148 (296)
T COG3596 83 SYDGENLVLWDTP-------GLGDGKDKDAEHRQLYRD----YLPKLDLVLWLIKADDRALGTDEDFLRDVII---LGLD 148 (296)
T ss_pred hccccceEEecCC-------CcccchhhhHHHHHHHHH----HhhhccEEEEeccCCCccccCCHHHHHHHHH---hccC
Confidence 4678999999999 988755433222222222 2344459999999998887766665555443 3333
Q ss_pred cceEEEEEcCCCCCC
Q 036659 103 DYMIVVFTGGDELED 117 (300)
Q Consensus 103 ~y~IVlFT~gD~Le~ 117 (300)
+.+|++.|..|..+.
T Consensus 149 ~~~i~~VtQ~D~a~p 163 (296)
T COG3596 149 KRVLFVVTQADRAEP 163 (296)
T ss_pred ceeEEEEehhhhhcc
Confidence 899999999987765
No 207
>CHL00189 infB translation initiation factor 2; Provisional
Probab=68.04 E-value=18 Score=39.38 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=41.9
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+..++++||| |.-+ + .....+++ .+.+++|||+.+....+.+...++..+.. +| .-
T Consensus 293 ~~~kItfiDTP-------Ghe~------F-~~mr~rg~----~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~~----iP 349 (742)
T CHL00189 293 ENQKIVFLDTP-------GHEA------F-SSMRSRGA----NVTDIAILIIAADDGVKPQTIEAINYIQA-AN----VP 349 (742)
T ss_pred CceEEEEEECC-------cHHH------H-HHHHHHHH----HHCCEEEEEEECcCCCChhhHHHHHHHHh-cC----ce
Confidence 35899999999 7421 1 22222333 47789999999876666655555554422 22 24
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
+||+.|--|...
T Consensus 350 iIVViNKiDl~~ 361 (742)
T CHL00189 350 IIVAINKIDKAN 361 (742)
T ss_pred EEEEEECCCccc
Confidence 677777666543
No 208
>PLN03110 Rab GTPase; Provisional
Probab=67.93 E-value=87 Score=27.69 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=12.2
Q ss_pred CCCCeEEEEEEeCCC
Q 036659 66 KDGIHAVLVVFSVRS 80 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~ 80 (300)
..+.|++|+|+.+..
T Consensus 82 ~~~~~~~ilv~d~~~ 96 (216)
T PLN03110 82 YRGAVGALLVYDITK 96 (216)
T ss_pred hCCCCEEEEEEECCC
Confidence 347899999999873
No 209
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=67.86 E-value=42 Score=28.24 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=40.0
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
...+..+.++||| |.-. . ..+ ....-.+.|++++|+.+.++-+-+ .+...+..++.....
T Consensus 49 ~~~~~~~~l~Dt~-------G~~~-------~-~~~---~~~~~~~a~~ii~v~D~t~~~s~~--~~~~~~~~~~~~~~~ 108 (168)
T cd04149 49 TYKNVKFNVWDVG-------GQDK-------I-RPL---WRHYYTGTQGLIFVVDSADRDRID--EARQELHRIINDREM 108 (168)
T ss_pred EECCEEEEEEECC-------CCHH-------H-HHH---HHHHhccCCEEEEEEeCCchhhHH--HHHHHHHHHhcCHhh
Confidence 3567889999999 6421 1 111 112345889999999987432222 234455555543322
Q ss_pred --cceEEEEEcCC
Q 036659 103 --DYMIVVFTGGD 113 (300)
Q Consensus 103 --~y~IVlFT~gD 113 (300)
.-.+||++.-|
T Consensus 109 ~~~piilv~NK~D 121 (168)
T cd04149 109 RDALLLVFANKQD 121 (168)
T ss_pred cCCcEEEEEECcC
Confidence 23566666555
No 210
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.71 E-value=34 Score=38.06 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=9.4
Q ss_pred HhcHHHHHHHHHHHHHHHHhHH
Q 036659 265 MKSNDEIRKLRENLERAQRETE 286 (300)
Q Consensus 265 ~~~~~~i~~lre~le~~~r~~~ 286 (300)
+.-+++-++-.+..|+|+++.|
T Consensus 385 ~qrEEerkkeie~rEaar~ElE 406 (1118)
T KOG1029|consen 385 RQREEERKKEIERREAAREELE 406 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 211
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=67.69 E-value=78 Score=27.04 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=27.2
Q ss_pred eCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCH
Q 036659 24 IQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQ 84 (300)
Q Consensus 24 ~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~ 84 (300)
++| ..+.+.||| |--.. .....+...+.|+|+||+.+.++-|-
T Consensus 43 ~~~~~~~l~i~Dt~-------G~~~~-----------~~l~~~~~~~a~~~ilv~dv~~~~sf 87 (189)
T cd04134 43 VDGLHIELSLWDTA-------GQEEF-----------DRLRSLSYADTDVIMLCFSVDSPDSL 87 (189)
T ss_pred ECCEEEEEEEEECC-------CChhc-----------cccccccccCCCEEEEEEECCCHHHH
Confidence 455 467889999 63211 11123345689999999999855333
No 212
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=66.98 E-value=8.9 Score=35.95 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=26.3
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVT 60 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ 60 (300)
.|+|+.++. ..+ +..+.+|||| |++.++...+.....+.-
T Consensus 153 ~g~T~~~~~---~~~-~~~~~l~DtP-------Gi~~~~~~~~~~~~~l~~ 192 (287)
T PRK09563 153 PGVTKAQQW---IKL-GKGLELLDTP-------GILWPKLEDQEVGLKLAL 192 (287)
T ss_pred CCeEEEEEE---EEe-CCcEEEEECC-------CcCCCCCCcHHHHHHHHH
Confidence 467777642 233 4568999999 888877666655544443
No 213
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.23 E-value=97 Score=27.61 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETE 286 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~~ 286 (300)
+...|+.++..+...+...|++.-.+......+.+.|...++.=+-++.
T Consensus 58 d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r 106 (158)
T PF09744_consen 58 DNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENR 106 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444444444444444444444555444444333333
No 214
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=65.61 E-value=39 Score=27.71 Aligned_cols=48 Identities=17% Similarity=-0.007 Sum_probs=26.5
Q ss_pred CCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 65 AKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
...+.|++|+|+++..+=|-++. ..++.+... .+ -...|||.|.-|..
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~ 117 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLR 117 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhh
Confidence 34678999999998743232222 122333222 22 23567778877743
No 215
>PLN00043 elongation factor 1-alpha; Provisional
Probab=65.35 E-value=24 Score=35.70 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=40.2
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-CCH---HHHHHHHHH--HHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-FSQ---EEEAALHSW--QTL 96 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-fT~---EE~~al~~l--q~l 96 (300)
.++++.+++|||| |- .+++ +++... ..++++.|||+.+..- |.. -+..+.+.+ ...
T Consensus 81 ~~~~~~i~liDtP-------Gh------~df~-~~~~~g----~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~ 142 (447)
T PLN00043 81 ETTKYYCTVIDAP-------GH------RDFI-KNMITG----TSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT 142 (447)
T ss_pred cCCCEEEEEEECC-------CH------HHHH-HHHHhh----hhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH
Confidence 4678999999999 62 2222 344333 3488888889888631 210 001122211 122
Q ss_pred hchhhhcceEEEEEcCCCC
Q 036659 97 FGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 97 FG~~i~~y~IVlFT~gD~L 115 (300)
.| ..+.||+.+--|..
T Consensus 143 ~g---i~~iIV~vNKmD~~ 158 (447)
T PLN00043 143 LG---VKQMICCCNKMDAT 158 (447)
T ss_pred cC---CCcEEEEEEcccCC
Confidence 33 35677778877743
No 216
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.20 E-value=47 Score=37.09 Aligned_cols=10 Identities=10% Similarity=-0.247 Sum_probs=4.4
Q ss_pred EEEEEEeCCC
Q 036659 27 VLEKVIDTRW 36 (300)
Q Consensus 27 r~v~VIDTP~ 36 (300)
-.|.|--+|.
T Consensus 137 ~Pv~vatvpS 146 (1118)
T KOG1029|consen 137 PPVSVATVPS 146 (1118)
T ss_pred CCcccccCCC
Confidence 3444444443
No 217
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=65.10 E-value=1.1e+02 Score=27.63 Aligned_cols=22 Identities=36% Similarity=0.441 Sum_probs=10.6
Q ss_pred HHHHHHHHHhHHhhcchHHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEA 259 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~ 259 (300)
+...|.++|..|+....++|++
T Consensus 95 ere~~q~~~E~E~~~~~~KEe~ 116 (157)
T PF15236_consen 95 EREELQRQFEEEQRKQREKEEE 116 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444444433
No 218
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=64.97 E-value=26 Score=35.66 Aligned_cols=16 Identities=19% Similarity=-0.257 Sum_probs=12.1
Q ss_pred EEEEEeCCCCcccCcccCC
Q 036659 28 LEKVIDTRWVRHAIARLFD 46 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd 46 (300)
.+.+||||||-+ |++.
T Consensus 173 ~~ilIdT~GWi~---G~~g 188 (398)
T COG1341 173 DFILIDTDGWIK---GWGG 188 (398)
T ss_pred CEEEEcCCCcee---CchH
Confidence 456999999976 6553
No 219
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=64.72 E-value=39 Score=29.90 Aligned_cols=31 Identities=39% Similarity=0.656 Sum_probs=26.9
Q ss_pred HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 036659 263 AQMKSNDEIRKLRENLERAQRETEELRKRAE 293 (300)
Q Consensus 263 ~~~~~~~~i~~lre~le~~~r~~~~~r~~~~ 293 (300)
...+.+++|.+|+++|++++.+.+.+++.++
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999886
No 220
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=63.92 E-value=57 Score=31.04 Aligned_cols=73 Identities=19% Similarity=0.122 Sum_probs=46.3
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+.+|||| |-... .....+|+...+... .|+-++||++.. ...++ +..+-..|.. ....
T Consensus 154 ~~D~ViIDt~-------Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~--~~~~d---~~~~~~~f~~--~~~~ 214 (270)
T PRK06731 154 RVDYILIDTA-------GKNYR---ASETVEEMIETMGQV--EPDYICLTLSAS--MKSKD---MIEIITNFKD--IHID 214 (270)
T ss_pred CCCEEEEECC-------CCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCc--cCHHH---HHHHHHHhCC--CCCC
Confidence 6789999999 54322 244556777666544 456789999864 22222 2223455665 6777
Q ss_pred EEEEEcCCCCCC
Q 036659 106 IVVFTGGDELED 117 (300)
Q Consensus 106 IVlFT~gD~Le~ 117 (300)
=++||-=|+-..
T Consensus 215 ~~I~TKlDet~~ 226 (270)
T PRK06731 215 GIVFTKFDETAS 226 (270)
T ss_pred EEEEEeecCCCC
Confidence 788998887654
No 221
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=63.90 E-value=9.6 Score=41.08 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=29.1
Q ss_pred ceeeCC-EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHH
Q 036659 21 TIRIQV-VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQE 85 (300)
Q Consensus 21 t~~~~G-r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~E 85 (300)
+..|.| ..+|+|||| |=-|+. .|+.+.+..+ | +.++|+.+..-+...
T Consensus 69 s~~~~~~~~iNlIDTP-------GHVDFt-------~EV~rslrvl-D---gavvVvdaveGV~~Q 116 (697)
T COG0480 69 TLFWKGDYRINLIDTP-------GHVDFT-------IEVERSLRVL-D---GAVVVVDAVEGVEPQ 116 (697)
T ss_pred EEEEcCceEEEEeCCC-------CccccH-------HHHHHHHHhh-c---ceEEEEECCCCeeec
Confidence 457887 999999999 877764 4555655533 2 344444443344433
No 222
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.74 E-value=48 Score=33.22 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=50.0
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhh-
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNV- 101 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i- 101 (300)
+.+..+++|||| |.... ...+..++.. +. ....|.-.+||++..+. .++ ..+++......|...
T Consensus 213 l~~~DlVLIDTa-------G~~~~---d~~l~e~La~-L~-~~~~~~~~lLVLsAts~--~~~l~evi~~f~~~~~~p~~ 278 (374)
T PRK14722 213 LRNKHMVLIDTI-------GMSQR---DRTVSDQIAM-LH-GADTPVQRLLLLNATSH--GDTLNEVVQAYRSAAGQPKA 278 (374)
T ss_pred hcCCCEEEEcCC-------CCCcc---cHHHHHHHHH-Hh-ccCCCCeEEEEecCccC--hHHHHHHHHHHHHhhccccc
Confidence 457789999999 75432 2345555543 32 23345566788887522 222 223444444433211
Q ss_pred --hcceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 102 --FDYMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 102 --~~y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
....=++||.-|+-..- .++-+.+..
T Consensus 279 ~~~~~~~~I~TKlDEt~~~-G~~l~~~~~ 306 (374)
T PRK14722 279 ALPDLAGCILTKLDEASNL-GGVLDTVIR 306 (374)
T ss_pred ccCCCCEEEEeccccCCCc-cHHHHHHHH
Confidence 24677889998877543 345555544
No 223
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.31 E-value=60 Score=35.00 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHh
Q 036659 231 VVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRA 292 (300)
Q Consensus 231 ~~~~~l~~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~~~~r~~~ 292 (300)
.++++.+++..|+.+|++-.+. .+.+.....--...+.+|..|+.+|+.+..+.++|.+..
T Consensus 444 ~~ee~k~eie~L~~~l~~~~r~-~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 444 ELEELKREIEKLESELERFRRE-VRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556888888888764221 112222222223345778888888888877777765543
No 224
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.95 E-value=64 Score=33.30 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhHHHHhhhhhhhhHHHHHHHHHHHhHHhhcchHH
Q 036659 185 RTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKV 256 (300)
Q Consensus 185 ~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v~~~~~~~~~~~l~~~~~lE~q~~~eq~a~le~ 256 (300)
.-+-|.+|+.+|--.+..-+.-.-|.+.-..+...-| +..++-+|.++.-++..+++.+++.++
T Consensus 337 ~me~iv~i~~li~ylid~~~~~~lS~~~k~kt~~~RQ--------~~~e~~~K~th~~rqEaaQ~kk~Ek~K 400 (440)
T KOG2357|consen 337 DMEDIVEILNLIFYLIDKAKKLFLSKDAKAKTDKNRQ--------RVEEEFLKLTHAARQEAAQEKKAEKKK 400 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHhhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888887777766544444544444443222 333455666666666665554444443
No 225
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=61.83 E-value=53 Score=34.34 Aligned_cols=18 Identities=44% Similarity=0.709 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 036659 269 DEIRKLRENLERAQRETE 286 (300)
Q Consensus 269 ~~i~~lre~le~~~r~~~ 286 (300)
.+|.+||..|++|.++.+
T Consensus 309 kelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478889999988876654
No 226
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=61.45 E-value=21 Score=32.08 Aligned_cols=49 Identities=29% Similarity=0.239 Sum_probs=34.5
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 68 GIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
+.|+|++|+++.++.|=++-..+...- +.-...-+.-|||.-++-+|..
T Consensus 74 ~~~gF~lVysitd~~SF~~~~~l~~~I-~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 74 NGDGFLLVYSITDRSSFEEAKQLREQI-LRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred cCcEEEEEEECCCHHHHHHHHHHHHHH-HHhhCcCCCCEEEEEEcccchh
Confidence 559999999999898888866665433 3333334467788777766654
No 227
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.40 E-value=85 Score=34.26 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=22.1
Q ss_pred EEEEEEeCCCCCCHHHHHHH-HHHHHHhchhhhcceEEEEEcCCCC
Q 036659 71 AVLVVFSVRSRFSQEEEAAL-HSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 71 A~LLV~~v~~rfT~EE~~al-~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
-++|+=-++.-.+..+..++ ..+...|-. ...++|+.||-.+|
T Consensus 404 sLvLlDE~g~GtD~~eg~ala~aiLe~l~~--~g~~viitTH~~eL 447 (771)
T TIGR01069 404 SLVLFDELGAGTDPDEGSALAISILEYLLK--QNAQVLITTHYKEL 447 (771)
T ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHH
Confidence 44555555545666666666 345444422 23455555665433
No 228
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=61.29 E-value=51 Score=34.75 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=38.8
Q ss_pred eeC-CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 23 RIQ-VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 23 ~~~-Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
.++ ++.++++||| |--++. .... ....+.++++||+.+......+....+.... .+| +
T Consensus 130 ~~~~~~~i~~iDTP-------Ghe~F~-------~~r~----rga~~aDiaILVVda~dgv~~qT~e~i~~~~-~~~--v 188 (587)
T TIGR00487 130 ENEDGKMITFLDTP-------GHEAFT-------SMRA----RGAKVTDIVVLVVAADDGVMPQTIEAISHAK-AAN--V 188 (587)
T ss_pred EECCCcEEEEEECC-------CCcchh-------hHHH----hhhccCCEEEEEEECCCCCCHhHHHHHHHHH-HcC--C
Confidence 443 4499999999 753322 1111 2345788999999887545444444443221 122 1
Q ss_pred hcceEEEEEcCCCC
Q 036659 102 FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 ~~y~IVlFT~gD~L 115 (300)
-+||+.+--|..
T Consensus 189 --PiIVviNKiDl~ 200 (587)
T TIGR00487 189 --PIIVAINKIDKP 200 (587)
T ss_pred --CEEEEEECcccc
Confidence 356666655643
No 229
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=61.25 E-value=4.9 Score=41.87 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=25.2
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCC
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGI 69 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGp 69 (300)
-.|.|.+|++|||| |--|+.. |+.+|+.. -+|.
T Consensus 97 fdwkg~rinlidtp-------ghvdf~l-------everclrv-ldga 129 (753)
T KOG0464|consen 97 FDWKGHRINLIDTP-------GHVDFRL-------EVERCLRV-LDGA 129 (753)
T ss_pred cccccceEeeecCC-------CcceEEE-------EHHHHHHH-hcCe
Confidence 36899999999999 8777654 67889875 2454
No 230
>PRK14845 translation initiation factor IF-2; Provisional
Probab=61.24 E-value=30 Score=39.11 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=34.0
Q ss_pred CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 65 AKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
...+.|++|||+.+...++......+..++. +| .-+||+++--|..
T Consensus 546 g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~-~~----iPiIVViNKiDL~ 591 (1049)
T PRK14845 546 GGSLADLAVLVVDINEGFKPQTIEAINILRQ-YK----TPFVVAANKIDLI 591 (1049)
T ss_pred hcccCCEEEEEEECcccCCHhHHHHHHHHHH-cC----CCEEEEEECCCCc
Confidence 3467899999999986788888888776654 23 2478888877754
No 231
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=59.96 E-value=30 Score=36.50 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=41.4
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEE
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIV 107 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IV 107 (300)
.+.++||| |.-++. . .......+.|++|||+.+...++.+....+..+... | .-.||
T Consensus 70 ~l~~iDTp-------G~e~f~-------~----l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~----vpiIV 126 (590)
T TIGR00491 70 GLLFIDTP-------GHEAFT-------N----LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K----TPFVV 126 (590)
T ss_pred cEEEEECC-------CcHhHH-------H----HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C----CCEEE
Confidence 38899999 632211 1 112234588999999999866777776666655432 2 24677
Q ss_pred EEEcCCCC
Q 036659 108 VFTGGDEL 115 (300)
Q Consensus 108 lFT~gD~L 115 (300)
+++--|..
T Consensus 127 v~NK~Dl~ 134 (590)
T TIGR00491 127 AANKIDRI 134 (590)
T ss_pred EEECCCcc
Confidence 77777754
No 232
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=59.87 E-value=67 Score=27.51 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=30.7
Q ss_pred hccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hcceEEEEEcCCCCCCC
Q 036659 62 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FDYMIVVFTGGDELEDN 118 (300)
Q Consensus 62 i~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~y~IVlFT~gD~Le~~ 118 (300)
......|++++++|+... .+..-+..+- .|...+.... -++.||+.-++-+|.+.
T Consensus 71 ~~~y~~~~~~~l~~~d~~-~~~~~~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDST-LRESSDELTE-EWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecc-cchhhhHHHH-HHHHHHHHhCCCCceEEEEecccccccc
Confidence 344567999999999987 3333333333 3333333333 34666666666556553
No 233
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=59.72 E-value=92 Score=25.14 Aligned_cols=75 Identities=23% Similarity=0.139 Sum_probs=37.0
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHHhc
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a-l~~lq~lFG 98 (300)
..++|. .+.++||| |.-+... + ...+ ..+.+++++|+.+..+-|-++-.. ...+....+
T Consensus 41 ~~~~~~~~~l~i~Dt~-------g~~~~~~----~---~~~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 102 (164)
T smart00173 41 IEIDGEVCLLDILDTA-------GQEEFSA----M---RDQY----MRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD 102 (164)
T ss_pred EEECCEEEEEEEEECC-------CcccchH----H---HHHH----HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 345564 56789999 6433211 1 1112 236789999999874333222111 122222222
Q ss_pred hhhhcceEEEEEcCCCC
Q 036659 99 KNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~L 115 (300)
.. -.-+|||-|.-|..
T Consensus 103 ~~-~~pii~v~nK~Dl~ 118 (164)
T smart00173 103 RD-DVPIVLVGNKCDLE 118 (164)
T ss_pred CC-CCCEEEEEECcccc
Confidence 11 12356666766643
No 234
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=59.63 E-value=1.2e+02 Score=31.73 Aligned_cols=45 Identities=31% Similarity=0.336 Sum_probs=26.6
Q ss_pred hhHH-HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhH
Q 036659 234 NMLK-ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRET 285 (300)
Q Consensus 234 ~~l~-~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~ 285 (300)
.+|+ ++.+|-.+|+.. ++.+++--++|-.+-+..|++.+|.+|+.
T Consensus 256 ~~l~~EveRlrt~l~~A-------qk~~~ek~~qy~~Ee~~~reen~rlQrkL 301 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRA-------QKSYQEKLMQYRAEEVDHREENERLQRKL 301 (552)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555 777777776553 22344444556666666777777776654
No 235
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=59.54 E-value=46 Score=25.45 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=10.7
Q ss_pred eeCC--EEEEEEeCC
Q 036659 23 RIQV--VLEKVIDTR 35 (300)
Q Consensus 23 ~~~G--r~v~VIDTP 35 (300)
..++ ..+.++|||
T Consensus 44 ~~~~~~~~~~~~D~~ 58 (161)
T TIGR00231 44 EEDGKTYKFNLLDTA 58 (161)
T ss_pred EECCEEEEEEEEECC
Confidence 4667 778999999
No 236
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=59.50 E-value=93 Score=34.94 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=6.7
Q ss_pred eEEEEEcCCC
Q 036659 105 MIVVFTGGDE 114 (300)
Q Consensus 105 ~IVlFT~gD~ 114 (300)
|=|.|+-|.-
T Consensus 753 TKVFFr~GKF 762 (1259)
T KOG0163|consen 753 TKVFFRPGKF 762 (1259)
T ss_pred eeEeecCcch
Confidence 6677776653
No 237
>PHA02518 ParA-like protein; Provisional
Probab=59.19 E-value=1.1e+02 Score=26.02 Aligned_cols=82 Identities=7% Similarity=-0.063 Sum_probs=39.3
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHH--hchhh
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTL--FGKNV 101 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~l--FG~~i 101 (300)
+.-.++||||| |-++ .....+ +. .-+.+|+++... .++-.--. .++.+..+ +.+ .
T Consensus 75 ~~~d~viiD~p-------~~~~------~~~~~~---l~----~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~~~-~ 132 (211)
T PHA02518 75 SGYDYVVVDGA-------PQDS------ELARAA---LR----IADMVLIPVQPS-PFDIWAAPDLVELIKARQEVTD-G 132 (211)
T ss_pred ccCCEEEEeCC-------CCcc------HHHHHH---HH----HCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhhCC-C
Confidence 34578999999 5322 222222 22 335777777765 55433322 22222221 222 2
Q ss_pred hcceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 102 FDYMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
..+..||++..+.-......+.+++..
T Consensus 133 ~~~~~iv~n~~~~~~~~~~~~~~~l~~ 159 (211)
T PHA02518 133 LPKFAFIISRAIKNTQLYREARKALAG 159 (211)
T ss_pred CceEEEEEeccCCcchHHHHHHHHHHH
Confidence 445566777654322211245556643
No 238
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=58.99 E-value=1.1e+02 Score=29.80 Aligned_cols=49 Identities=12% Similarity=0.327 Sum_probs=33.3
Q ss_pred CCCCeEEEEEEeCCCCCC---------HHHHHHHHHHHHHhchhhhc--ceEEEEEcCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFS---------QEEEAALHSWQTLFGKNVFD--YMIVVFTGGDEL 115 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT---------~EE~~al~~lq~lFG~~i~~--y~IVlFT~gD~L 115 (300)
-.|++||+.|+++. .|. .--..++..+..++....+. -+||+|+--|-+
T Consensus 205 f~~v~~IiFvvdlS-d~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 205 FDNVTAIIFCVALS-EYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLF 264 (342)
T ss_pred hCCCCEEEEEEECc-ccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhH
Confidence 45899999999997 553 34456777778888776654 455555544544
No 239
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.79 E-value=97 Score=33.84 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCCCHHHHHHH-HHHHHHhchhhhcceEEEEEcCC
Q 036659 71 AVLVVFSVRSRFSQEEEAAL-HSWQTLFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 71 A~LLV~~v~~rfT~EE~~al-~~lq~lFG~~i~~y~IVlFT~gD 113 (300)
.++|+=-++.-.+..+..++ ..+...|-.. ..++|+-||-.
T Consensus 409 sLvLlDE~~~GtDp~eg~ala~aile~l~~~--~~~vIitTH~~ 450 (782)
T PRK00409 409 SLVLFDELGAGTDPDEGAALAISILEYLRKR--GAKIIATTHYK 450 (782)
T ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECChH
Confidence 35555555546667776666 3455555332 34555556643
No 240
>PRK14974 cell division protein FtsY; Provisional
Probab=58.47 E-value=40 Score=33.11 Aligned_cols=73 Identities=15% Similarity=0.056 Sum_probs=46.4
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.|..+.+|||| |.... +.....|+.+-.... .||.++||++.. +. ..+++.. ..|-+ ....
T Consensus 221 ~~~DvVLIDTa-------Gr~~~---~~~lm~eL~~i~~~~--~pd~~iLVl~a~---~g--~d~~~~a-~~f~~-~~~~ 281 (336)
T PRK14974 221 RGIDVVLIDTA-------GRMHT---DANLMDELKKIVRVT--KPDLVIFVGDAL---AG--NDAVEQA-REFNE-AVGI 281 (336)
T ss_pred CCCCEEEEECC-------CccCC---cHHHHHHHHHHHHhh--CCceEEEeeccc---cc--hhHHHHH-HHHHh-cCCC
Confidence 46679999999 76543 345556665554433 578899999875 22 2444444 33433 3556
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
.-|+||-=|.-.
T Consensus 282 ~giIlTKlD~~~ 293 (336)
T PRK14974 282 DGVILTKVDADA 293 (336)
T ss_pred CEEEEeeecCCC
Confidence 888999777654
No 241
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=57.74 E-value=73 Score=26.35 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=38.8
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
..+...+.+.||| |.-. . ..+. ....-|.+++|+|+.+.++-+-+ .+...+..+......
T Consensus 40 ~~~~~~~~l~D~~-------G~~~-------~-~~~~---~~~~~~ad~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~ 99 (159)
T cd04150 40 EYKNISFTVWDVG-------GQDK-------I-RPLW---RHYFQNTQGLIFVVDSNDRERIG--EAREELQRMLNEDEL 99 (159)
T ss_pred EECCEEEEEEECC-------CCHh-------H-HHHH---HHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhcHHh
Confidence 4566789999999 7411 1 1111 11235789999999986432222 223444454433222
Q ss_pred --cceEEEEEcCCCCCC
Q 036659 103 --DYMIVVFTGGDELED 117 (300)
Q Consensus 103 --~y~IVlFT~gD~Le~ 117 (300)
.-++|+.+--| |.+
T Consensus 100 ~~~piilv~NK~D-l~~ 115 (159)
T cd04150 100 RDAVLLVFANKQD-LPN 115 (159)
T ss_pred cCCCEEEEEECCC-CCC
Confidence 23445555444 543
No 242
>PTZ00369 Ras-like protein; Provisional
Probab=56.87 E-value=1.1e+02 Score=26.06 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=13.9
Q ss_pred CCCCeEEEEEEeCCCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFS 83 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT 83 (300)
..+.+++|+|+.+.++-|
T Consensus 74 ~~~~d~iilv~D~s~~~s 91 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSS 91 (189)
T ss_pred hhcCCEEEEEEECCCHHH
Confidence 458899999999875433
No 243
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=56.79 E-value=3.1e+02 Score=30.34 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=46.2
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHHHHHH-hhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVT-CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI 106 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~-ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I 106 (300)
.|..||.| |+ +.+++.. ..|-+ |. -+.+|++|....+.+|..|+.-++..-+- ..++.
T Consensus 207 DivliDsP-------Gl---d~~se~t-swid~~cl-----daDVfVlV~NaEntlt~sek~Ff~~vs~~-----KpniF 265 (749)
T KOG0448|consen 207 DIVLIDSP-------GL---DVDSELT-SWIDSFCL-----DADVFVLVVNAENTLTLSEKQFFHKVSEE-----KPNIF 265 (749)
T ss_pred cceeccCC-------CC---CCchhhh-HHHHHHhh-----cCCeEEEEecCccHhHHHHHHHHHHhhcc-----CCcEE
Confidence 78899999 75 2233333 33433 43 46799999999999999999888876543 44555
Q ss_pred EEEEcCCCCCC
Q 036659 107 VVFTGGDELED 117 (300)
Q Consensus 107 VlFT~gD~Le~ 117 (300)
||--.=|.-.+
T Consensus 266 IlnnkwDasas 276 (749)
T KOG0448|consen 266 ILNNKWDASAS 276 (749)
T ss_pred EEechhhhhcc
Confidence 55544365544
No 244
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=55.81 E-value=51 Score=29.94 Aligned_cols=70 Identities=21% Similarity=0.134 Sum_probs=37.7
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhh
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVF 102 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~ 102 (300)
+....+.++||| |-=.. ..+. .....+.+++|+|+.+..+-|-++.. .+..+....++++
T Consensus 41 ~~~~~l~iwDt~-------G~e~~----~~l~-------~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~- 101 (220)
T cd04126 41 WGPYNISIWDTA-------GREQF----HGLG-------SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDC- 101 (220)
T ss_pred eeEEEEEEEeCC-------Ccccc----hhhH-------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-
Confidence 345678999999 53111 1111 11245899999999998665544432 2233333333221
Q ss_pred cceEEEEEcCC
Q 036659 103 DYMIVVFTGGD 113 (300)
Q Consensus 103 ~y~IVlFT~gD 113 (300)
-+|||-+.-|
T Consensus 102 -piIlVgNK~D 111 (220)
T cd04126 102 -LFAVVGNKLD 111 (220)
T ss_pred -cEEEEEECcc
Confidence 2455555555
No 245
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=55.33 E-value=2.2e+02 Score=28.08 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=36.1
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
..|..+++|||+ |+-.+.. + | +.+ .|.+|+|+..+ +..+-.++..=.--|+ +
T Consensus 146 ~~g~d~viieT~-------Gv~qs~~---~----i---~~~----aD~vlvv~~p~---~gd~iq~~k~gi~E~a----D 197 (332)
T PRK09435 146 AAGYDVILVETV-------GVGQSET---A----V---AGM----VDFFLLLQLPG---AGDELQGIKKGIMELA----D 197 (332)
T ss_pred ccCCCEEEEECC-------CCccchh---H----H---HHh----CCEEEEEecCC---chHHHHHHHhhhhhhh----h
Confidence 458899999999 6653221 1 2 222 56888886533 3444444332111112 1
Q ss_pred ceEEEEEcCCCCCC
Q 036659 104 YMIVVFTGGDELED 117 (300)
Q Consensus 104 y~IVlFT~gD~Le~ 117 (300)
|+|+|-.|.+..
T Consensus 198 --IiVVNKaDl~~~ 209 (332)
T PRK09435 198 --LIVINKADGDNK 209 (332)
T ss_pred --eEEeehhcccch
Confidence 788888886643
No 246
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=54.51 E-value=69 Score=26.40 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=12.7
Q ss_pred CCCeEEEEEEeCCCC
Q 036659 67 DGIHAVLVVFSVRSR 81 (300)
Q Consensus 67 pGpHA~LLV~~v~~r 81 (300)
-+.||+++|+.+.++
T Consensus 71 ~~~~~~i~v~d~~~~ 85 (161)
T cd04117 71 RRAQGIFLVYDISSE 85 (161)
T ss_pred cCCcEEEEEEECCCH
Confidence 488999999999854
No 247
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.48 E-value=1.7e+02 Score=32.01 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHhchhhhcceEEEE
Q 036659 81 RFSQEEEAALHSWQTLFGKNVFDYMIVVF 109 (300)
Q Consensus 81 rfT~EE~~al~~lq~lFG~~i~~y~IVlF 109 (300)
.|+.+....+..+..+ -+.++||+
T Consensus 390 tfS~~m~~~~~Il~~~-----~~~sLvLl 413 (782)
T PRK00409 390 TFSGHMTNIVRILEKA-----DKNSLVLF 413 (782)
T ss_pred HHHHHHHHHHHHHHhC-----CcCcEEEe
Confidence 4677766666665555 34567776
No 248
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=53.40 E-value=17 Score=35.00 Aligned_cols=31 Identities=10% Similarity=-0.049 Sum_probs=22.7
Q ss_pred CCCCCccccCCCceeeCCEEEEEEeCCCCcc
Q 036659 9 RFGAPKTAPLPPTIRIQVVLEKVIDTRWVRH 39 (300)
Q Consensus 9 ~~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~ 39 (300)
..++|..=.-..+..++|..|.++.||+|+.
T Consensus 89 ~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~ 119 (265)
T KOG0813|consen 89 IPGITRGLKDGETVTVGGLEVRCLHTPGHTA 119 (265)
T ss_pred CccccccCCCCcEEEECCEEEEEEeCCCccC
Confidence 3456655444456789999999999997754
No 249
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=53.15 E-value=2.1e+02 Score=27.35 Aligned_cols=75 Identities=15% Similarity=0.305 Sum_probs=43.4
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC---------HHHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS---------QEEEAALHSW 93 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT---------~EE~~al~~l 93 (300)
.+++..+.++|++ |=- ...+=-..| -+|++||+.|+++. .|. .-=..++..+
T Consensus 157 ~~~~~~~~~~Dvg-------Gq~-------~~R~kW~~~----f~~v~~iifvv~ls-d~d~~~~e~~~~nrl~esl~~f 217 (317)
T cd00066 157 TIKNLKFRMFDVG-------GQR-------SERKKWIHC----FEDVTAIIFVVALS-EYDQVLFEDESTNRMQESLNLF 217 (317)
T ss_pred EecceEEEEECCC-------CCc-------ccchhHHHH----hCCCCEEEEEEEch-hcccccccCCcchHHHHHHHHH
Confidence 4567788888888 411 011112233 34999999999997 553 3334555566
Q ss_pred HHHhchhhhc--ceEEEEEcCCCCC
Q 036659 94 QTLFGKNVFD--YMIVVFTGGDELE 116 (300)
Q Consensus 94 q~lFG~~i~~--y~IVlFT~gD~Le 116 (300)
..+.-...+. -+||+|+--|-++
T Consensus 218 ~~i~~~~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 218 DSICNSRWFANTSIILFLNKKDLFE 242 (317)
T ss_pred HHHHhCccccCCCEEEEccChHHHH
Confidence 6666555443 4555555555443
No 250
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=52.77 E-value=82 Score=27.33 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=28.3
Q ss_pred cCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 64 MAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 64 l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
+...|.|+||||+++.++-|-+.- .-++.+.... ++ --.|||.+--| |.+
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~--~piilVgNK~D-L~~ 123 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PN--TKMLLVGCKSD-LRT 123 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CC--CCEEEEeEChh-hhc
Confidence 456799999999999866454432 2333343322 22 23455555555 543
No 251
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=52.28 E-value=41 Score=30.50 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=34.8
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhcc--CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGM--AKDGIHAVLVVFSVRSRFSQEEEAALHSWQTL 96 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l--~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~l 96 (300)
+..|.+|||| |++|+..+. +......-++.+ |. ++|+.+. + .....+...+..+.+.
T Consensus 59 ~~~v~~lDte-------G~~~~~~~~-~~~~~~~~~l~~llss----~~i~n~~-~-~~~~~~~~~l~~~~~~ 117 (224)
T cd01851 59 EHAVLLLDTE-------GTDGRERGE-FEDDARLFALATLLSS----VLIYNSW-E-TILGDDLAALMGLLKT 117 (224)
T ss_pred cceEEEEecC-------CcCccccCc-hhhhhHHHHHHHHHhC----EEEEecc-C-cccHHHHHHHHHHHHH
Confidence 5789999999 999987654 222222223332 32 4444433 3 6777777777777653
No 252
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=51.99 E-value=1e+02 Score=26.53 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=15.7
Q ss_pred CCCCCeEEEEEEeCCCCCCHH
Q 036659 65 AKDGIHAVLVVFSVRSRFSQE 85 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~rfT~E 85 (300)
...+.|++++|+.+.++-|-+
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~ 91 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYE 91 (191)
T ss_pred hccCCCEEEEEEECCCHHHHH
Confidence 356899999999997554433
No 253
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.81 E-value=1.1e+02 Score=33.54 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHhcHHHHHHHHH
Q 036659 254 LKVEEAAQLAQMKSNDEIRKLRE 276 (300)
Q Consensus 254 le~e~~~~~~~~~~~~~i~~lre 276 (300)
.++++..++++.+.++-|+++++
T Consensus 568 ~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 568 KEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455555555543
No 254
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=51.76 E-value=1.1e+02 Score=27.28 Aligned_cols=48 Identities=10% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh-cceEEEEEcCCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF-DYMIVVFTGGDELE 116 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~-~y~IVlFT~gD~Le 116 (300)
..|.+|+++|+.+.++-|-++- ..|...+..... +.-|||+-++-+|.
T Consensus 70 ~~~ad~iIlVfDvtd~~Sf~~l---~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 70 YRSAKGIILVYDITKKETFDDL---PKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred hcCCCEEEEEEECcCHHHHHHH---HHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 3488999999999855554443 333333332221 23455555555564
No 255
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.75 E-value=74 Score=31.96 Aligned_cols=85 Identities=15% Similarity=0.040 Sum_probs=48.4
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
..+..+.+|||| |.... .... -.|+.+-+.-+.| ++-++||++..+. . ..+..+-.-|. .+.
T Consensus 252 ~~~~DlVLIDTa-------Gr~~~--~~~~-l~el~~~l~~~~~-~~e~~LVlsat~~--~---~~~~~~~~~~~--~~~ 313 (388)
T PRK12723 252 SKDFDLVLVDTI-------GKSPK--DFMK-LAEMKELLNACGR-DAEFHLAVSSTTK--T---SDVKEIFHQFS--PFS 313 (388)
T ss_pred hCCCCEEEEcCC-------CCCcc--CHHH-HHHHHHHHHhcCC-CCeEEEEEcCCCC--H---HHHHHHHHHhc--CCC
Confidence 357789999999 65432 1222 3455555554433 5678899988633 2 22223333343 245
Q ss_pred ceEEEEEcCCCCCCCcccHHHhhh
Q 036659 104 YMIVVFTGGDELEDNDETLEDYLG 127 (300)
Q Consensus 104 y~IVlFT~gD~Le~~~~tledyl~ 127 (300)
+.=++||.=|+-..- .++=+.+.
T Consensus 314 ~~~~I~TKlDet~~~-G~~l~~~~ 336 (388)
T PRK12723 314 YKTVIFTKLDETTCV-GNLISLIY 336 (388)
T ss_pred CCEEEEEeccCCCcc-hHHHHHHH
Confidence 677889988876433 24444443
No 256
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=51.64 E-value=67 Score=33.95 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHhhcchHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVE 257 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e 257 (300)
-.+.||+||+.|+.-|...+
T Consensus 543 lreslekql~~ErklR~~~q 562 (641)
T KOG3915|consen 543 LRESLEKQLAMERKLRAIVQ 562 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34678999999887664443
No 257
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=51.37 E-value=39 Score=25.22 Aligned_cols=45 Identities=33% Similarity=0.319 Sum_probs=29.4
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQ 282 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~ 282 (300)
-+..||.++..|+.++.-.-..+..--.+.+.+.+.|+.+|++.+
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888777665543222344444566778888999888875
No 258
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=51.34 E-value=1.1e+02 Score=24.78 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=38.4
Q ss_pred eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659 22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG 98 (300)
..++|.. +.+.||| |.-.... +.. ....+.|++|+|+.+.++-|-++ ...+..+....+
T Consensus 42 ~~~~~~~~~l~i~Dt~-------G~~~~~~----~~~-------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 103 (163)
T cd04176 42 IEVDSSPSVLEILDTA-------GTEQFAS----MRD-------LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG 103 (163)
T ss_pred EEECCEEEEEEEEECC-------Ccccccc----hHH-------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 3456654 5679999 7422221 111 12347899999999874433222 222333433332
Q ss_pred hhhhcceEEEEEcCCC
Q 036659 99 KNVFDYMIVVFTGGDE 114 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~ 114 (300)
.. -.-.+||.|--|.
T Consensus 104 ~~-~~piviv~nK~Dl 118 (163)
T cd04176 104 YE-KVPIILVGNKVDL 118 (163)
T ss_pred CC-CCCEEEEEECccc
Confidence 11 1235667776663
No 259
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=51.30 E-value=20 Score=34.87 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=48.1
Q ss_pred ee-CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCH---H------HHHHHHH
Q 036659 23 RI-QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQ---E------EEAALHS 92 (300)
Q Consensus 23 ~~-~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~---E------E~~al~~ 92 (300)
.+ ++..+.++|..|.+.- .+=-..|. +|++|||+|+++. .|.+ | =..+|..
T Consensus 231 ~~~~~~~~~~~DvGGqr~e--------------RkKW~~~F----~~v~~vif~vsls-~ydq~~~ed~~~nrl~esl~l 291 (389)
T PF00503_consen 231 NFSGSRKFRLIDVGGQRSE--------------RKKWIHCF----EDVTAVIFVVSLS-EYDQTLYEDPNTNRLHESLNL 291 (389)
T ss_dssp EE-TTEEEEEEEETSSGGG--------------GGGGGGGG----TTESEEEEEEEGG-GGGSBESSSTTSBHHHHHHHH
T ss_pred EeecccccceecCCCCchh--------------hhhHHHHh----ccccEEEEeeccc-chhhhhcccchHHHHHHHHHH
Confidence 45 8889999999954310 11112333 3999999999986 5554 2 2455666
Q ss_pred HHHHhchhhhcc--eEEEEEcCCCCC
Q 036659 93 WQTLFGKNVFDY--MIVVFTGGDELE 116 (300)
Q Consensus 93 lq~lFG~~i~~y--~IVlFT~gD~Le 116 (300)
+..+.....+.. .||+||.-|-|+
T Consensus 292 F~~i~~~~~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 292 FESICNNPWFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp HHHHHTSGGGTTSEEEEEEE-HHHHH
T ss_pred HHHHHhCcccccCceEEeeecHHHHH
Confidence 666666677654 488888766553
No 260
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=51.25 E-value=1.2e+02 Score=23.82 Aligned_cols=43 Identities=33% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 82 FSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 82 fT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
||++++..|.....-+-. .-..-|+|.|-.+ +.+ .++++|-.+
T Consensus 2 Ls~~~~~~l~~~l~~~~~-~t~~~i~Vvtv~~-~~~--~~~~~~A~~ 44 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEK-KTGVQIVVVTVPS-LPG--QDIEDYAQQ 44 (119)
T ss_dssp S-HHHHHHHHHHHHHHHH-HC--EEEEEEESB--TT--S-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-hhCCEEEEEEEcC-CCC--CCHHHHHHH
Confidence 688898888776666633 3333454555333 433 366766543
No 261
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.22 E-value=1.3e+02 Score=30.46 Aligned_cols=85 Identities=19% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+..+++|||| |....+ .....++...+..+. -|+-++||++.. ... ..+..+...|.. ...
T Consensus 298 ~~~DlVlIDt~-------G~~~~d---~~~~~~L~~ll~~~~-~~~~~~LVl~a~--~~~---~~l~~~~~~f~~--~~~ 359 (424)
T PRK05703 298 RDCDVILIDTA-------GRSQRD---KRLIEELKALIEFSG-EPIDVYLVLSAT--TKY---EDLKDIYKHFSR--LPL 359 (424)
T ss_pred CCCCEEEEeCC-------CCCCCC---HHHHHHHHHHHhccC-CCCeEEEEEECC--CCH---HHHHHHHHHhCC--CCC
Confidence 35789999999 764332 233345555555222 245666667754 222 344444555553 334
Q ss_pred eEEEEEcCCCCCCCcccHHHhhhh
Q 036659 105 MIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 105 ~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
.=|+||.=|+-..- .++-+++..
T Consensus 360 ~~vI~TKlDet~~~-G~i~~~~~~ 382 (424)
T PRK05703 360 DGLIFTKLDETSSL-GSILSLLIE 382 (424)
T ss_pred CEEEEecccccccc-cHHHHHHHH
Confidence 46889998885443 355566654
No 262
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=50.89 E-value=3e+02 Score=29.59 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Q 036659 268 NDEIRKLRENLERAQRETEELRKRA 292 (300)
Q Consensus 268 ~~~i~~lre~le~~~r~~~~~r~~~ 292 (300)
.++||...++.|.++.++++-+..+
T Consensus 250 qekiR~~eekqeee~ke~e~~~~k~ 274 (591)
T KOG2412|consen 250 QEKIRAEEEKQEEERKEAEEQAEKE 274 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655555555555554444433
No 263
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.86 E-value=2e+02 Score=33.96 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=7.5
Q ss_pred HHHhHHHHHHHhh
Q 036659 281 AQRETEELRKRAE 293 (300)
Q Consensus 281 ~~r~~~~~r~~~~ 293 (300)
|+++++++|.+|+
T Consensus 1687 ar~rAe~L~~eA~ 1699 (1758)
T KOG0994|consen 1687 ARERAEQLRTEAE 1699 (1758)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666554
No 264
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=50.76 E-value=1.6e+02 Score=25.27 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=13.8
Q ss_pred CCCCeEEEEEEeCCCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFS 83 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT 83 (300)
..+.|++++|+.+..+-|
T Consensus 71 ~~~a~~~ilv~D~t~~~s 88 (201)
T cd04107 71 YRGAVGAIIVFDVTRPST 88 (201)
T ss_pred hCCCCEEEEEEECCCHHH
Confidence 358899999999874433
No 265
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=50.67 E-value=1.1e+02 Score=24.97 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=12.4
Q ss_pred CCCeEEEEEEeCCCC
Q 036659 67 DGIHAVLVVFSVRSR 81 (300)
Q Consensus 67 pGpHA~LLV~~v~~r 81 (300)
.+.+++++|+.+.++
T Consensus 76 ~~~d~~i~v~d~~~~ 90 (170)
T cd04116 76 RGSDCCLLTFAVDDS 90 (170)
T ss_pred cCCCEEEEEEECCCH
Confidence 577999999999844
No 266
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=50.24 E-value=40 Score=27.79 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=23.9
Q ss_pred CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
.+.+++++|+.+.++-|-+. ....+.+...++..-. =.|++.|--|.
T Consensus 71 ~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~-piiiv~nK~D~ 118 (168)
T cd04177 71 KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNV-PMVLVGNKADL 118 (168)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-CEEEEEEChhc
Confidence 47789999999874323222 2223334444433211 13455665553
No 267
>PRK04004 translation initiation factor IF-2; Validated
Probab=49.43 E-value=62 Score=34.03 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=30.7
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
.+.|+++||+.+...+..+....+..+.. .| .-+||+++--|..
T Consensus 93 ~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~~----vpiIvviNK~D~~ 136 (586)
T PRK04004 93 ALADIAILVVDINEGFQPQTIEAINILKR-RK----TPFVVAANKIDRI 136 (586)
T ss_pred hhCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcCCc
Confidence 47889999999986677777777765543 22 2367788877754
No 268
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=49.33 E-value=83 Score=34.47 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..|++|||| |--| + ..|+..++. +.++.|||+....-+....+..+..+ ...+ .-
T Consensus 96 ~~~~inliDtP-------Gh~d------F-~~e~~~al~----~~D~ailVvda~~Gv~~~t~~~~~~~---~~~~--~p 152 (843)
T PLN00116 96 NEYLINLIDSP-------GHVD------F-SSEVTAALR----ITDGALVVVDCIEGVCVQTETVLRQA---LGER--IR 152 (843)
T ss_pred CceEEEEECCC-------CHHH------H-HHHHHHHHh----hcCEEEEEEECCCCCcccHHHHHHHH---HHCC--CC
Confidence 37899999999 7543 2 345566554 55677888877656655555444433 2222 23
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
+||+++-=|.+
T Consensus 153 ~i~~iNK~D~~ 163 (843)
T PLN00116 153 PVLTVNKMDRC 163 (843)
T ss_pred EEEEEECCccc
Confidence 46666666766
No 269
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=49.30 E-value=1.9e+02 Score=25.69 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=25.6
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHH
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQE 85 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~E 85 (300)
..+.+.||| |.-... .+.. ....+.|++|+|+.+.++-|-+
T Consensus 62 ~~l~i~Dt~-------G~~~~~--------~~~~---~~~~~~~~~ilvfD~~~~~s~~ 102 (219)
T PLN03071 62 IRFYCWDTA-------GQEKFG--------GLRD---GYYIHGQCAIIMFDVTARLTYK 102 (219)
T ss_pred EEEEEEECC-------Cchhhh--------hhhH---HHcccccEEEEEEeCCCHHHHH
Confidence 578899999 542211 1111 1245889999999998554433
No 270
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=49.29 E-value=1.4e+02 Score=24.11 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=11.8
Q ss_pred CCCeEEEEEEeCCCC
Q 036659 67 DGIHAVLVVFSVRSR 81 (300)
Q Consensus 67 pGpHA~LLV~~v~~r 81 (300)
.+.+++|+|+.+..+
T Consensus 71 ~~~d~~i~v~d~~~~ 85 (172)
T cd01862 71 RGADCCVLVYDVTNP 85 (172)
T ss_pred cCCCEEEEEEECCCH
Confidence 467999999998743
No 271
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=49.25 E-value=1.1e+02 Score=33.14 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHhhcchHHHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAA 260 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~ 260 (300)
.+..||++|.+|++++...|+..
T Consensus 489 ~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 489 SLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998886666433
No 272
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=48.57 E-value=85 Score=26.98 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=27.9
Q ss_pred cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 64 MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 64 l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
.+..+.|++|+|+.+.++-|-++-. .++..+.....-.-.|+|-|.-|-.
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~--~~~~~~~~~~~~~~pilVgnK~Dl~ 117 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIK--EWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4567899999999998555544422 2333332211112336666766643
No 273
>PRK10867 signal recognition particle protein; Provisional
Probab=47.74 E-value=97 Score=31.62 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=44.3
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+..+.+|||| |-... .+....|+..-.... .|+-+|+|+... |. +.+++.. ..|.+ ....
T Consensus 182 ~~~DvVIIDTa-------Grl~~---d~~lm~eL~~i~~~v--~p~evllVlda~---~g--q~av~~a-~~F~~-~~~i 242 (433)
T PRK10867 182 NGYDVVIVDTA-------GRLHI---DEELMDELKAIKAAV--NPDEILLVVDAM---TG--QDAVNTA-KAFNE-ALGL 242 (433)
T ss_pred cCCCEEEEeCC-------CCccc---CHHHHHHHHHHHHhh--CCCeEEEEEecc---cH--HHHHHHH-HHHHh-hCCC
Confidence 46789999999 65432 345556666655544 466778998853 43 3444443 44444 3456
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
+=||+|.-|.-
T Consensus 243 ~giIlTKlD~~ 253 (433)
T PRK10867 243 TGVILTKLDGD 253 (433)
T ss_pred CEEEEeCccCc
Confidence 67788986643
No 274
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.34 E-value=80 Score=34.74 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=52.7
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FD 103 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~ 103 (300)
.+..+++|||| |.-..+ ..+..|+..-.. ..-||=++||++.. |+ ...+..+.+.|...+ .+
T Consensus 262 ~~~D~VLIDTA-------GRs~~d---~~l~eel~~l~~--~~~p~e~~LVLsAt---~~--~~~l~~i~~~f~~~~~~~ 324 (767)
T PRK14723 262 GDKHLVLIDTV-------GMSQRD---RNVSEQIAMLCG--VGRPVRRLLLLNAA---SH--GDTLNEVVHAYRHGAGED 324 (767)
T ss_pred cCCCEEEEeCC-------CCCccC---HHHHHHHHHHhc--cCCCCeEEEEECCC---Cc--HHHHHHHHHHHhhcccCC
Confidence 45679999999 754432 346677766443 23478889999875 22 345555556665432 24
Q ss_pred ceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 104 YMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 104 y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
.+=++||.=|+-..- ..+=+.+..
T Consensus 325 i~glIlTKLDEt~~~-G~iL~i~~~ 348 (767)
T PRK14723 325 VDGCIITKLDEATHL-GPALDTVIR 348 (767)
T ss_pred CCEEEEeccCCCCCc-cHHHHHHHH
Confidence 667789988876543 344444443
No 275
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=46.56 E-value=1.4e+02 Score=25.37 Aligned_cols=47 Identities=26% Similarity=0.196 Sum_probs=28.3
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE 86 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE 86 (300)
..++| ..+.+.||| |.-..+. +. .+...+.|++++|+++.++-|-++
T Consensus 42 ~~~~~~~~~l~i~Dt~-------G~~~~~~--------~~---~~~~~~a~~~ilv~d~~~~~s~~~ 90 (175)
T cd01874 42 VMIGGEPYTLGLFDTA-------GQEDYDR--------LR---PLSYPQTDVFLVCFSVVSPSSFEN 90 (175)
T ss_pred EEECCEEEEEEEEECC-------Cccchhh--------hh---hhhcccCCEEEEEEECCCHHHHHH
Confidence 34566 456789999 6533211 11 123457899999999975544433
No 276
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=46.07 E-value=92 Score=24.75 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=20.0
Q ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEE
Q 036659 70 HAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVF 109 (300)
Q Consensus 70 HA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlF 109 (300)
+.+|+|+..+ .++-..-..+.......|..-..++.+|+
T Consensus 66 D~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVv 104 (106)
T cd03111 66 DRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVL 104 (106)
T ss_pred CeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEe
Confidence 5678888766 66665544444333333432123444444
No 277
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=44.67 E-value=1.4e+02 Score=32.58 Aligned_cols=34 Identities=38% Similarity=0.644 Sum_probs=23.6
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHh
Q 036659 259 AAQLAQMKSNDEIRKLRENLERAQRETEELRKRA 292 (300)
Q Consensus 259 ~~~~~~~~~~~~i~~lre~le~~~r~~~~~r~~~ 292 (300)
.++.+..+.+++|++|.|+|.+++.+++..|..+
T Consensus 347 a~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 347 AVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777777777777777777777666554
No 278
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=43.96 E-value=1e+02 Score=31.96 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=56.1
Q ss_pred CccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHH
Q 036659 13 PKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 92 (300)
Q Consensus 13 T~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~ 92 (300)
|+.=-......++|..|.+|||- |+=+++.--|.++=| |.... -.....+|+|+......++++...+..
T Consensus 251 TTRDviee~i~i~G~pv~l~DTA-------GiRet~d~VE~iGIe--Rs~~~-i~~ADlvL~v~D~~~~~~~~d~~~~~~ 320 (454)
T COG0486 251 TTRDVIEEDINLNGIPVRLVDTA-------GIRETDDVVERIGIE--RAKKA-IEEADLVLFVLDASQPLDKEDLALIEL 320 (454)
T ss_pred CccceEEEEEEECCEEEEEEecC-------CcccCccHHHHHHHH--HHHHH-HHhCCEEEEEEeCCCCCchhhHHHHHh
Confidence 33333444567899999999999 777766555555433 33332 225568999999875578888877761
Q ss_pred HHHHhchhhhcceEEEEEcCCCCCC
Q 036659 93 WQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 93 lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
-..-+..++|.+-.| |..
T Consensus 321 ------~~~~~~~i~v~NK~D-L~~ 338 (454)
T COG0486 321 ------LPKKKPIIVVLNKAD-LVS 338 (454)
T ss_pred ------cccCCCEEEEEechh-ccc
Confidence 111234677777666 443
No 279
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.89 E-value=97 Score=33.00 Aligned_cols=72 Identities=17% Similarity=0.035 Sum_probs=37.7
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+..+++|||| |....+ .....++..-.. + .....+||++... +..+. ..+...|.. ...
T Consensus 427 ~~~DLVLIDTa-------G~s~~D---~~l~eeL~~L~a-a--~~~a~lLVLpAts--s~~Dl---~eii~~f~~--~~~ 486 (559)
T PRK12727 427 RDYKLVLIDTA-------GMGQRD---RALAAQLNWLRA-A--RQVTSLLVLPANA--HFSDL---DEVVRRFAH--AKP 486 (559)
T ss_pred ccCCEEEecCC-------Ccchhh---HHHHHHHHHHHH-h--hcCCcEEEEECCC--ChhHH---HHHHHHHHh--hCC
Confidence 35789999999 764321 222333322111 1 1236777887753 33332 222333443 245
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
.-+|||.-|+-.
T Consensus 487 ~gvILTKlDEt~ 498 (559)
T PRK12727 487 QGVVLTKLDETG 498 (559)
T ss_pred eEEEEecCcCcc
Confidence 668999877643
No 280
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=43.71 E-value=46 Score=31.74 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=25.2
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeC
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSV 78 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v 78 (300)
.+.+|||| ||.......+.++.....-+ -.+++++.|++.
T Consensus 63 ~i~lvD~p-------Gl~~~a~~~~glg~~fL~~i----~~~D~li~VV~~ 102 (274)
T cd01900 63 TIEFVDIA-------GLVKGASKGEGLGNKFLSHI----REVDAIAHVVRC 102 (274)
T ss_pred EEEEEECC-------CcCCCCchhhHHHHHHHHHH----HhCCEEEEEEeC
Confidence 69999999 98864332233433332222 257899999975
No 281
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=42.60 E-value=1.9e+02 Score=23.66 Aligned_cols=73 Identities=18% Similarity=0.123 Sum_probs=37.1
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
.++|. .+.++||| |.-+... + ....-.+.+++++|+.+.++-|-+. ..+.+...+...
T Consensus 43 ~~~~~~~~l~i~Dt~-------G~~~~~~--------~---~~~~~~~~d~~i~v~~~~~~~s~~~--~~~~~~~~~~~~ 102 (175)
T cd01870 43 EVDGKQVELALWDTA-------GQEDYDR--------L---RPLSYPDTDVILMCFSIDSPDSLEN--IPEKWTPEVKHF 102 (175)
T ss_pred EECCEEEEEEEEeCC-------Cchhhhh--------c---cccccCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhh
Confidence 45565 56889999 6422111 0 1123468899999999984422222 112222222221
Q ss_pred h-hcceEEEEEcCCCC
Q 036659 101 V-FDYMIVVFTGGDEL 115 (300)
Q Consensus 101 i-~~y~IVlFT~gD~L 115 (300)
. -...+||.|--|-.
T Consensus 103 ~~~~piilv~nK~Dl~ 118 (175)
T cd01870 103 CPNVPIILVGNKKDLR 118 (175)
T ss_pred CCCCCEEEEeeChhcc
Confidence 1 12456666766633
No 282
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=41.71 E-value=3.6e+02 Score=28.15 Aligned_cols=53 Identities=26% Similarity=0.361 Sum_probs=32.7
Q ss_pred HHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 036659 240 SRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAE 293 (300)
Q Consensus 240 ~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~~~~r~~~~ 293 (300)
..|++++..+.+.....+ ....-+.+..+++.+++-.|+....++.++++..|
T Consensus 439 ~~L~qk~~~~~k~~~~~~-~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE 491 (507)
T PF05600_consen 439 ESLQQKLKQEEKLRRKRE-DLEEKRQEAQEEQQELEPKLDALVERTRELQKQIE 491 (507)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333332 23344455667788888888888888888888777
No 283
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=41.41 E-value=62 Score=36.70 Aligned_cols=92 Identities=16% Similarity=0.240 Sum_probs=57.7
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCCh-HHHHHHHHHhhcc-----CCCCCeEEEEEEeCCCCCC---HHH-------
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGS-KFVGKEIVTCIGM-----AKDGIHAVLVVFSVRSRFS---QEE------- 86 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~-e~v~kEI~~ci~l-----~~pGpHA~LLV~~v~~rfT---~EE------- 86 (300)
+|-...-++|||+ |-+-+..+. +.-..+-..-+.+ ....+..|||++++. .+. +++
T Consensus 157 wwf~~~avliDta-------G~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~-~Ll~~~~~~~~~~a~~ 228 (1169)
T TIGR03348 157 WWFTDEAVLIDTA-------GRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLA-DLLTADPAERKAHARA 228 (1169)
T ss_pred eEecCCEEEEcCC-------CccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHH-HHhCCCHHHHHHHHHH
Confidence 3456677899999 766443321 1112333333332 246889999999998 443 333
Q ss_pred -HHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 87 -EAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 87 -~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
++.|..+...||-.+= ..||||.-|.+.+ +.+|...
T Consensus 229 lR~rl~el~~~lg~~~P--VYvv~Tk~Dll~G----F~~~f~~ 265 (1169)
T TIGR03348 229 IRQRLQELREQLGARFP--VYLVLTKADLLAG----FEEFFAD 265 (1169)
T ss_pred HHHHHHHHHHHhCCCCC--EEEEEecchhhcC----HHHHHHh
Confidence 2344667778887654 4578899999976 5666654
No 284
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=41.39 E-value=1.1e+02 Score=27.16 Aligned_cols=43 Identities=16% Similarity=0.062 Sum_probs=26.6
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE 86 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE 86 (300)
...+.+.||| |--.. ..+......|.+++++|+.+.++-|-+.
T Consensus 43 ~~~l~iwDt~-------G~e~~-----------~~l~~~~~~~ad~~ilV~D~t~~~S~~~ 85 (200)
T smart00176 43 PIRFNVWDTA-------GQEKF-----------GGLRDGYYIQGQCAIIMFDVTARVTYKN 85 (200)
T ss_pred EEEEEEEECC-------Cchhh-----------hhhhHHHhcCCCEEEEEEECCChHHHHH
Confidence 3578899999 53211 1111223458899999999986555443
No 285
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=41.20 E-value=96 Score=31.57 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=43.3
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+..+.+|||| |... ..+....|+....... .|+.++||+... |.+ .++... ..|.+. ...
T Consensus 181 ~~~DvVIIDTa-------Gr~~---~d~~l~~eL~~i~~~~--~p~e~lLVvda~---tgq--~~~~~a-~~f~~~-v~i 241 (428)
T TIGR00959 181 NGFDVVIVDTA-------GRLQ---IDEELMEELAAIKEIL--NPDEILLVVDAM---TGQ--DAVNTA-KTFNER-LGL 241 (428)
T ss_pred cCCCEEEEeCC-------Cccc---cCHHHHHHHHHHHHhh--CCceEEEEEecc---chH--HHHHHH-HHHHhh-CCC
Confidence 46679999999 7543 2244556666655433 467889999864 332 344333 445433 355
Q ss_pred eEEEEEcCCC
Q 036659 105 MIVVFTGGDE 114 (300)
Q Consensus 105 ~IVlFT~gD~ 114 (300)
+=|++|.-|.
T Consensus 242 ~giIlTKlD~ 251 (428)
T TIGR00959 242 TGVVLTKLDG 251 (428)
T ss_pred CEEEEeCccC
Confidence 6777897664
No 286
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=41.18 E-value=79 Score=22.63 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=8.9
Q ss_pred CCCeEEEEEEeCC
Q 036659 67 DGIHAVLVVFSVR 79 (300)
Q Consensus 67 pGpHA~LLV~~v~ 79 (300)
...+.+++|+...
T Consensus 57 ~~~~~vi~v~~~~ 69 (99)
T cd01983 57 LAADLVIIVTTPE 69 (99)
T ss_pred hhCCEEEEecCCc
Confidence 3667777777766
No 287
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=40.64 E-value=2.8e+02 Score=25.87 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=73.7
Q ss_pred CCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhh
Q 036659 48 SAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLG 127 (300)
Q Consensus 48 ~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~ 127 (300)
+...+++.+.|..--.. |.-+.-++..+++-+.-+.+.-++.+.-+-+.+ -..|++||.|.|.-= . -+|+.
T Consensus 65 adQK~DL~rQv~~l~~~---~~~~~~v~~digSgln~~Rk~~~kll~li~~~~---V~rVvV~ykDRL~RF--G-fe~le 135 (193)
T COG2452 65 ADQKEDLERQINYLTNY---GYKVDEVLTDIGSGLNMQRKGLLKLLKLVEGNS---VRRVVVSYKDRLNRF--G-FELVE 135 (193)
T ss_pred ccchHHHHHHHHHHHHh---ccccceeeehhhhhhhhhhhhHHHHHHHHcCCc---eeEEEEEccchHhHH--h-HHHHH
Confidence 33456777777764443 777888888888888888777766665555544 357889999998642 1 23443
Q ss_pred hCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHH
Q 036659 128 RECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQ 202 (300)
Q Consensus 128 ~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~ 202 (300)
. ..+.++-++++.|+...+. ++-|.+|++.+.++...
T Consensus 136 --------~---------------------------~~~a~~~eivvv~~~e~~~---eELveDlisIltsfs~k 172 (193)
T COG2452 136 --------A---------------------------VCKAHNVEIVVVNQEDKDS---EELVEDLVSILTSFSAK 172 (193)
T ss_pred --------H---------------------------HHHhcCcEEEEecCCCCCH---HHHHHHHHHHHHHHHHH
Confidence 3 6788899999999876552 46777777777666543
No 288
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=40.56 E-value=2e+02 Score=23.31 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=24.8
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS 80 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~ 80 (300)
.++|. .+.++||| |..+ .......+ -.+.|++|+|+.+..
T Consensus 50 ~~~~~~~~~~~~D~~-------g~~~-------~~~~~~~~----~~~~d~~i~v~d~~~ 91 (169)
T cd04114 50 EIKGEKIKLQIWDTA-------GQER-------FRSITQSY----YRSANALILTYDITC 91 (169)
T ss_pred EECCEEEEEEEEECC-------CcHH-------HHHHHHHH----hcCCCEEEEEEECcC
Confidence 45664 46778999 6321 11222222 357899999999874
No 289
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=40.31 E-value=1.6e+02 Score=26.67 Aligned_cols=9 Identities=56% Similarity=0.682 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 036659 238 ETSRLEQQL 246 (300)
Q Consensus 238 ~~~~lE~q~ 246 (300)
.+..||+++
T Consensus 31 rc~ele~~l 39 (182)
T PF15035_consen 31 RCAELEQQL 39 (182)
T ss_pred HHHHHHHHH
Confidence 444444444
No 290
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=40.31 E-value=1.5e+02 Score=25.42 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=16.4
Q ss_pred CCCCCeEEEEEEeCCCCCCHH
Q 036659 65 AKDGIHAVLVVFSVRSRFSQE 85 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~rfT~E 85 (300)
...|.|++|||+++.++-|-+
T Consensus 69 ~~~~a~~~ilvfdit~~~Sf~ 89 (178)
T cd04131 69 CYPDSDAVLICFDISRPETLD 89 (178)
T ss_pred hcCCCCEEEEEEECCChhhHH
Confidence 467999999999997555544
No 291
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=40.09 E-value=1.9e+02 Score=26.79 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=36.5
Q ss_pred hHHHHHHHHhhhhhHHHHhhhhhhhhHHHHHHHHHHHhHHhh-cchHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 036659 210 DDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQA-APLKVEEAAQLAQMKSNDEIRKLRENLERAQ 282 (300)
Q Consensus 210 ~e~f~e~e~~~~~~v~~~~~~~~~~~l~~~~~lE~q~~~eq~-a~le~e~~~~~~~~~~~~~i~~lre~le~~~ 282 (300)
.+-|.+|++.+... .++.+....++|+.+|.++..--+ -+..+|...+.+..+....+..|.++...++
T Consensus 25 h~~f~~Ak~rLe~~----hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er 94 (193)
T PF12925_consen 25 HQRFKEAKERLEEK----HRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAER 94 (193)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777544443 223333455577777777643211 2234455555555566666666665554443
No 292
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=39.29 E-value=1.2e+02 Score=31.47 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=46.1
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI 106 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I 106 (300)
..+..||+| |- ++++ +-+.-+.-|+|+.|||+..+.-.+.+....|..+ ++||- ++.|
T Consensus 50 ~~~~fIDvp-------gh------~~~i-----~~miag~~~~d~alLvV~~deGl~~qtgEhL~iL-dllgi---~~gi 107 (447)
T COG3276 50 GVMGFIDVP-------GH------PDFI-----SNLLAGLGGIDYALLVVAADEGLMAQTGEHLLIL-DLLGI---KNGI 107 (447)
T ss_pred CceEEeeCC-------Cc------HHHH-----HHHHhhhcCCceEEEEEeCccCcchhhHHHHHHH-HhcCC---CceE
Confidence 388999999 53 2333 2222234588888888887556666655555444 67774 6889
Q ss_pred EEEEcCCCCCC
Q 036659 107 VVFTGGDELED 117 (300)
Q Consensus 107 VlFT~gD~Le~ 117 (300)
||.|-.|...+
T Consensus 108 ivltk~D~~d~ 118 (447)
T COG3276 108 IVLTKADRVDE 118 (447)
T ss_pred EEEeccccccH
Confidence 99998887743
No 293
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=38.93 E-value=1.3e+02 Score=26.50 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=17.0
Q ss_pred CCCCCeEEEEEEeCCCCCCHHH
Q 036659 65 AKDGIHAVLVVFSVRSRFSQEE 86 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~rfT~EE 86 (300)
...+.++||||+++.++-|=+.
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~ 105 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRN 105 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHH
Confidence 5679999999999986655443
No 294
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=37.57 E-value=93 Score=26.60 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 036659 253 PLKVEEAAQLAQMKSNDEIRKLRENLERAQ 282 (300)
Q Consensus 253 ~le~e~~~~~~~~~~~~~i~~lre~le~~~ 282 (300)
+.+++++++..-.+-..||+.|+..+|.|-
T Consensus 28 e~eA~kkA~K~lkKN~rEIkRL~~HAe~al 57 (109)
T PHA02571 28 EAEAEKKAAKILKKNRREIKRLKKHAEEAL 57 (109)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356777788888888889999999888873
No 295
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=37.36 E-value=1.8e+02 Score=23.41 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh--cceEEEEEcCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF--DYMIVVFTGGDEL 115 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~--~y~IVlFT~gD~L 115 (300)
..+.++|++|+++.+ ++--..+..|...+-...- -.++|+-|.-|-.
T Consensus 69 ~~~~~~~ii~fd~~~---~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 69 YRNSDAIIIVFDVTD---EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp HTTESEEEEEEETTB---HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred ccccccccccccccc---cccccccccccccccccccccccceeeecccccc
Confidence 347899999999973 3444444444444333332 2566666766633
No 296
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=36.03 E-value=3.2e+02 Score=24.44 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=3.7
Q ss_pred ChHHHHHHH
Q 036659 209 TDDIFVELK 217 (300)
Q Consensus 209 t~e~f~e~e 217 (300)
++++-.++.
T Consensus 30 ~eei~~ei~ 38 (149)
T PF15346_consen 30 SEEIEKEIQ 38 (149)
T ss_pred hHHHHHHHH
Confidence 444444433
No 297
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=35.50 E-value=2.5e+02 Score=27.29 Aligned_cols=27 Identities=37% Similarity=0.613 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhh-hcCCcC
Q 036659 269 DEIRKLRENLERAQRETEELRKRAE-KGGCAI 299 (300)
Q Consensus 269 ~~i~~lre~le~~~r~~~~~r~~~~-~~~c~i 299 (300)
++|...+...+++ ++++.++| ..+|-|
T Consensus 155 kei~tY~~~fQ~~----Qel~~RaEdy~kckI 182 (265)
T PF06409_consen 155 KEIHTYKQMFQRM----QELQQRAEDYYKCKI 182 (265)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhccC
Confidence 4566666666665 35555555 345655
No 298
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.47 E-value=3.8e+02 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=16.6
Q ss_pred HHHHhhccC-CCCCeEEEEEEeCCC-CCCH
Q 036659 57 EIVTCIGMA-KDGIHAVLVVFSVRS-RFSQ 84 (300)
Q Consensus 57 EI~~ci~l~-~pGpHA~LLV~~v~~-rfT~ 84 (300)
|...|...+ ..-.-++|+..-+|. ||-+
T Consensus 227 e~~~c~~c~~~~~LwicliCg~vgcgrY~e 256 (493)
T KOG0804|consen 227 ESSLCLACGCTEDLWICLICGNVGCGRYKE 256 (493)
T ss_pred hhhhhhhhcccccEEEEEEccceecccccc
Confidence 566676653 345666777666662 5543
No 299
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=35.45 E-value=1.5e+02 Score=27.34 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=15.8
Q ss_pred CCCCCeEEEEEEeCCCCCCHH
Q 036659 65 AKDGIHAVLVVFSVRSRFSQE 85 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~rfT~E 85 (300)
...|.|+|+||+.+.++-|-+
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~ 101 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVD 101 (232)
T ss_pred HcCCCcEEEEEEECCChHHHH
Confidence 456999999999997544433
No 300
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=35.35 E-value=39 Score=23.40 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=17.6
Q ss_pred hhcCCeEEEEeCCCcchhhchHHHHHHHHH
Q 036659 166 QLCDNRCVLFDNKTKDEAKRTEQIWKLLSL 195 (300)
Q Consensus 166 ~~C~~R~~~FnNk~~de~~~~~Qv~eLL~~ 195 (300)
=..+|+.++||+-+.+ +++++|.+
T Consensus 10 IfY~G~V~Vfd~v~~~------Ka~~im~l 33 (36)
T PF06200_consen 10 IFYGGQVCVFDDVPPD------KAQEIMLL 33 (36)
T ss_pred EEECCEEEEeCCCCHH------HHHHHHHH
Confidence 3578999999998754 56666654
No 301
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=35.19 E-value=3.2e+02 Score=24.63 Aligned_cols=15 Identities=7% Similarity=0.155 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 036659 187 EQIWKLLSLVNSVAV 201 (300)
Q Consensus 187 ~Qv~eLL~~Ve~mv~ 201 (300)
.||++|+++|-+=..
T Consensus 3 ~~~~~l~dki~~~~~ 17 (198)
T PRK01558 3 FEVKDLINKIKKDGL 17 (198)
T ss_pred hHHHHHHHHHHHHHH
Confidence 588888888865433
No 302
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=35.14 E-value=42 Score=35.78 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=47.7
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC--CCCHHHHH-HHHHHHHHhchhhhc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS--RFSQEEEA-ALHSWQTLFGKNVFD 103 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~--rfT~EE~~-al~~lq~lFG~~i~~ 103 (300)
.+.-||||| |+.|--...-.+ -|...--.| +-=+-|||.++.+.. -||-+++. ..++|+-+|-.+.
T Consensus 215 lrwQViDTP-------GILD~plEdrN~-IEmqsITAL-AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~-- 283 (620)
T KOG1490|consen 215 LRWQVIDTP-------GILDRPEEDRNI-IEMQIITAL-AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKV-- 283 (620)
T ss_pred eeeeecCCc-------cccCcchhhhhH-HHHHHHHHH-HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCc--
Confidence 367799999 999864432211 222211122 223458999998863 68887764 5599999997653
Q ss_pred ceEEEEEcCCCC
Q 036659 104 YMIVVFTGGDEL 115 (300)
Q Consensus 104 y~IVlFT~gD~L 115 (300)
+|+|.---|-+
T Consensus 284 -~IlvlNK~D~m 294 (620)
T KOG1490|consen 284 -TILVLNKIDAM 294 (620)
T ss_pred -eEEEeeccccc
Confidence 56666544433
No 303
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=34.91 E-value=31 Score=28.83 Aligned_cols=44 Identities=23% Similarity=0.171 Sum_probs=26.6
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCC
Q 036659 68 GIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD 113 (300)
..+.+++|+..+ .++-+.-..+.....-+|.. .+..-||++.-+
T Consensus 116 ~ad~viv~~~~~-~~~i~~~~~~~~~l~~~~~~-~~~~~vv~N~v~ 159 (195)
T PF01656_consen 116 AADYVIVPIEPD-PSSIEGAERLIELLKRLGKK-LKIIGVVINRVD 159 (195)
T ss_dssp TSSEEEEEEESS-HHHHHHHHHHHHHHHHHTHT-EEEEEEEEEEET
T ss_pred hCceeeeecCCc-HHHHHHHHHHHHHHHHhccc-cceEEEEEeeeC
Confidence 456788888876 55544444444444444444 567777888654
No 304
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=34.19 E-value=39 Score=31.11 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=7.4
Q ss_pred EEEeCCCCc
Q 036659 30 KVIDTRWVR 38 (300)
Q Consensus 30 ~VIDTP~w~ 38 (300)
.+|||||++
T Consensus 174 ~liDtPG~~ 182 (245)
T TIGR00157 174 LIADTPGFN 182 (245)
T ss_pred EEEeCCCcc
Confidence 799999664
No 305
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=33.60 E-value=2.1e+02 Score=24.76 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=16.4
Q ss_pred CCCCeEEEEEEeCCCCCCHHH
Q 036659 66 KDGIHAVLVVFSVRSRFSQEE 86 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE 86 (300)
-.|.|++|||+.+.++-|=+.
T Consensus 70 ~~~a~~~ilvyd~~~~~Sf~~ 90 (176)
T cd04133 70 YRGADVFVLAFSLISRASYEN 90 (176)
T ss_pred cCCCcEEEEEEEcCCHHHHHH
Confidence 348899999999986666554
No 306
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=33.37 E-value=2.1e+02 Score=21.43 Aligned_cols=43 Identities=37% Similarity=0.521 Sum_probs=28.0
Q ss_pred HHHHHHHHHhHH---hhcchHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 036659 238 ETSRLEQQLTEE---QAAPLKVEEAAQLAQMKSNDEIRKLRENLER 280 (300)
Q Consensus 238 ~~~~lE~q~~~e---q~a~le~e~~~~~~~~~~~~~i~~lre~le~ 280 (300)
.+.++++.|+.+ .+|+.+.-+..+.-...+..++..|.+.|+.
T Consensus 19 ~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 19 EIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777776543 3566666555666666777888888777653
No 307
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.19 E-value=3.6e+02 Score=24.38 Aligned_cols=6 Identities=0% Similarity=-0.036 Sum_probs=3.5
Q ss_pred hhcCCe
Q 036659 166 QLCDNR 171 (300)
Q Consensus 166 ~~C~~R 171 (300)
++||+-
T Consensus 48 EKiGss 53 (188)
T PF03962_consen 48 EKIGSS 53 (188)
T ss_pred hhccCe
Confidence 666653
No 308
>PF13974 YebO: YebO-like protein
Probab=32.88 E-value=1.1e+02 Score=24.82 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=29.9
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 036659 261 QLAQMKSNDEIRKLRENLERAQRETEELRKRAEK 294 (300)
Q Consensus 261 ~~~~~~~~~~i~~lre~le~~~r~~~~~r~~~~~ 294 (300)
.++--+.||.|+-|.+-||+.+|.+.-+|++++.
T Consensus 19 nRaSvRANEQI~LL~~ileqQKrQn~LL~rL~~~ 52 (80)
T PF13974_consen 19 NRASVRANEQIELLEEILEQQKRQNALLRRLCEA 52 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556688999999999999999999999998874
No 309
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.84 E-value=4.8e+02 Score=26.90 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC
Q 036659 187 EQIWKLLSLVNSVAVQNDGQPY 208 (300)
Q Consensus 187 ~Qv~eLL~~Ve~mv~~NgG~~y 208 (300)
..+.+|...++.++..-.+...
T Consensus 223 ~~~~el~~~~~~l~~~~~~~~~ 244 (582)
T PF09731_consen 223 PEVQELVSIFNDLIESINEGNL 244 (582)
T ss_pred hhHHHHHHhccchhhhhccccc
Confidence 4558888888888744333333
No 310
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=32.54 E-value=3.9e+02 Score=30.43 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=6.6
Q ss_pred cCCCCCeEEEEEEe
Q 036659 64 MAKDGIHAVLVVFS 77 (300)
Q Consensus 64 l~~pGpHA~LLV~~ 77 (300)
|-..|-|.|=-|-|
T Consensus 657 L~stGt~FiRCiKP 670 (1259)
T KOG0163|consen 657 LESTGTHFIRCIKP 670 (1259)
T ss_pred HHhcCCeeEEeecC
Confidence 33456655444433
No 311
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=32.46 E-value=3.2e+02 Score=26.93 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=44.9
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCch
Q 036659 68 GIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYS 144 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~ 144 (300)
|..+.|+|..-. .|.-.|-+.+-.+-+.||-. +.||+=-+ .+.+. .+++|-.++.-+.|- ++||+
T Consensus 185 ~aD~ai~VTEPT-p~glhD~kr~~el~~~f~ip---~~iViNr~--~~g~s--~ie~~~~e~gi~il~----~IPyd 249 (284)
T COG1149 185 GADLAILVTEPT-PFGLHDLKRALELVEHFGIP---TGIVINRY--NLGDS--EIEEYCEEEGIPILG----EIPYD 249 (284)
T ss_pred cCCEEEEEecCC-ccchhHHHHHHHHHHHhCCc---eEEEEecC--CCCch--HHHHHHHHcCCCeeE----ECCcc
Confidence 778999999875 99999988888888999865 44554333 45542 599999774222222 46666
No 312
>PLN02559 chalcone--flavonone isomerase
Probab=32.26 E-value=52 Score=31.33 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhchhhhc-ceEEEEEcC
Q 036659 78 VRSRFSQEEEAALHSWQTLFGKNVFD-YMIVVFTGG 112 (300)
Q Consensus 78 v~~rfT~EE~~al~~lq~lFG~~i~~-y~IVlFT~g 112 (300)
+| .||++|..+|+.+...|-++.+. -+.|+||+-
T Consensus 120 ~g-~y~daE~~aLekF~~~Fk~~~fp~Gs~I~ft~s 154 (230)
T PLN02559 120 LG-IYTDAEAKAVEKFKEAFKEETFPPGSSILFTHS 154 (230)
T ss_pred cC-CcchhHHHHHHHHHHHhcCCCCCCCCEEEEEEC
Confidence 44 67999999999999999998776 899999986
No 313
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=32.25 E-value=1.6e+02 Score=28.64 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=25.3
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
..+.++||| |+........-++......+. ..+++++|+.+.
T Consensus 69 v~i~l~D~a-------Glv~ga~~~~glg~~fL~~ir----~aD~ii~Vvd~~ 110 (318)
T cd01899 69 VPVELIDVA-------GLVPGAHEGKGLGNKFLDDLR----DADALIHVVDAS 110 (318)
T ss_pred ceEEEEECC-------CCCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence 579999999 876432222223333222232 557999999985
No 314
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.84 E-value=1.6e+02 Score=30.54 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=5.5
Q ss_pred CeEEEEEEeCC
Q 036659 69 IHAVLVVFSVR 79 (300)
Q Consensus 69 pHA~LLV~~v~ 79 (300)
-|.-.+||.++
T Consensus 222 ~~md~~VFAv~ 232 (440)
T KOG2357|consen 222 EDMDHFVFAVG 232 (440)
T ss_pred cccceeEEeee
Confidence 34455555554
No 315
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=31.62 E-value=1.8e+02 Score=22.23 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=10.8
Q ss_pred CeEEEEEEeCCCCCCHHH
Q 036659 69 IHAVLVVFSVRSRFSQEE 86 (300)
Q Consensus 69 pHA~LLV~~v~~rfT~EE 86 (300)
.|.+++|++.+ ..+-..
T Consensus 62 ad~viv~~~~~-~~s~~~ 78 (104)
T cd02042 62 ADLVLIPVQPS-PLDLDG 78 (104)
T ss_pred CCEEEEeccCC-HHHHHH
Confidence 36788888765 444444
No 316
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=31.60 E-value=1.4e+02 Score=32.16 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=52.0
Q ss_pred CCCCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCH---
Q 036659 8 RRFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQ--- 84 (300)
Q Consensus 8 ~~~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~--- 84 (300)
|..|||..-... .-.-+-..+++||+||- +.|-+.+ |. -+.- .+ ||+|+|---.+-|+.
T Consensus 237 RerGvTm~v~~~-~fes~~~~~tliDaPGh-----kdFi~nm--------i~-g~sq-aD--~avLvvd~s~~~FE~gfd 298 (603)
T KOG0458|consen 237 RERGVTMDVKTT-WFESKSKIVTLIDAPGH-----KDFIPNM--------IS-GASQ-AD--VAVLVVDASTGEFESGFD 298 (603)
T ss_pred hhcceeEEeeeE-EEecCceeEEEecCCCc-----cccchhh--------hc-cccc-cc--eEEEEEECCcchhhhccC
Confidence 345666543222 12345679999999942 3454332 11 1122 22 888888654445542
Q ss_pred --HHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 85 --EEEAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 85 --EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
..-+-...+...|| ..+-||..+--|..+=
T Consensus 299 ~~gQtrEha~llr~Lg---i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 299 PGGQTREHALLLRSLG---ISQLIVAINKMDLVSW 330 (603)
T ss_pred CCCchHHHHHHHHHcC---cceEEEEeecccccCc
Confidence 23344456677888 7788999998887653
No 317
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.89 E-value=3.6e+02 Score=25.89 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=17.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhHHhhcchHHH
Q 036659 224 VNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVE 257 (300)
Q Consensus 224 v~~~~~~~~~~~l~~~~~lE~q~~~eq~a~le~e 257 (300)
+..+. ..|.+...++..||.+.++ |+++|+..
T Consensus 182 i~~Lr-~~y~~l~~~i~~lE~~Vae-Q~~qL~~~ 213 (259)
T PF08657_consen 182 IAALR-QRYNQLSNSIAYLEAEVAE-QEAQLERM 213 (259)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44444 3444444477777777654 35555443
No 318
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=30.58 E-value=1.4e+02 Score=26.70 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=53.2
Q ss_pred HHHHHhhccCCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccc
Q 036659 56 KEIVTCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 134 (300)
Q Consensus 56 kEI~~ci~l~~pGpHA~LLV~~v~~r-fT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~L 134 (300)
..|.+-+.-| ++++.|+++.+++.- =|-==-..++.+++.|+.. ...+++++-. ..++ .++-|-.- ..|
T Consensus 112 ~~ir~~~e~~-d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~-~~~~~~ilP~--~~e~---~~~~~Na~---~~l 181 (216)
T PF00091_consen 112 EQIRKEIEKC-DSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK-PIISFSILPF--SSEG---VVEPYNAL---LSL 181 (216)
T ss_dssp HHHHHHHHTS-TTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS-EEEEEEEE-C--GGGS---HHHHHHHH---HHH
T ss_pred cccchhhccc-cccccceecccccceeccccccccchhhhcccccc-ceeecccccc--cccc---ccccceeh---hHH
Confidence 3455544433 799999999999854 2333356778888888443 5556666644 2232 55656433 456
Q ss_pred cccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCC
Q 036659 135 KSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNK 178 (300)
Q Consensus 135 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk 178 (300)
.. |.+.|+. .++|||.
T Consensus 182 ~~---------------------------l~~~~d~-~i~~dN~ 197 (216)
T PF00091_consen 182 SE---------------------------LQEYADS-VILFDND 197 (216)
T ss_dssp HH---------------------------HHHTSSE-EEEEEHH
T ss_pred HH---------------------------HHHhCCE-EEEEcHH
Confidence 66 7666655 8899985
No 319
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=30.51 E-value=3e+02 Score=22.59 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLREN 277 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~ 277 (300)
.+.+|-.++..++.+-.+..+..++++.++++.++.++.-
T Consensus 47 ~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 47 ANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444444444455555555544444433
No 320
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.24 E-value=14 Score=28.52 Aligned_cols=25 Identities=36% Similarity=0.814 Sum_probs=19.3
Q ss_pred CccccccccCCCchhhhhhccccccccc
Q 036659 131 PKPLKSSRLKVPYSILLHFLNDFLLPWG 158 (300)
Q Consensus 131 ~~~Lk~~~~~~~~~~~~~~~~~~~~~~~ 158 (300)
..+++=|.+-+||| +|.+.|++|||
T Consensus 5 hddI~VG~itl~ys---~~~~GWl~Pgg 29 (60)
T PF07026_consen 5 HDDIRVGTITLPYS---HFKNGWLMPGG 29 (60)
T ss_pred CCceEEeEEEEEEE---eccceeecCCC
Confidence 34566677777876 68899999999
No 321
>PRK02224 chromosome segregation protein; Provisional
Probab=30.00 E-value=7.2e+02 Score=26.80 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=10.0
Q ss_pred HHHHHHHHHhc--hhhhcceEE
Q 036659 88 AALHSWQTLFG--KNVFDYMIV 107 (300)
Q Consensus 88 ~al~~lq~lFG--~~i~~y~IV 107 (300)
.+-..+..++| ...+.++|+
T Consensus 113 ~~~~~i~~llg~~~~~f~~~~~ 134 (880)
T PRK02224 113 DVREEVTELLRMDAEAFVNCAY 134 (880)
T ss_pred HHHHHHHHHHCCCHHHhcceeE
Confidence 34455566666 334444443
No 322
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=29.94 E-value=1.2e+02 Score=26.59 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=11.8
Q ss_pred CeEEEEEEeCCCCCCHHH
Q 036659 69 IHAVLVVFSVRSRFSQEE 86 (300)
Q Consensus 69 pHA~LLV~~v~~rfT~EE 86 (300)
.+.+|+|++.+ ..+.+.
T Consensus 172 aD~viiV~~~~-~~~~~~ 188 (207)
T TIGR03018 172 VGQIVLVVEEG-RTTQEA 188 (207)
T ss_pred CCEEEEEEECC-CCCHHH
Confidence 35788888887 666643
No 323
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=29.84 E-value=2.4e+02 Score=25.23 Aligned_cols=10 Identities=10% Similarity=-0.190 Sum_probs=8.5
Q ss_pred CEEEEEEeCC
Q 036659 26 VVLEKVIDTR 35 (300)
Q Consensus 26 Gr~v~VIDTP 35 (300)
.-.+.+||||
T Consensus 116 ~yD~viID~~ 125 (270)
T cd02040 116 DLDFVIYDVL 125 (270)
T ss_pred CCCEEEEecc
Confidence 4578999999
No 324
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=29.80 E-value=4.4e+02 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=11.0
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHH
Q 036659 260 AQLAQMKSNDEIRKLRENLERAQ 282 (300)
Q Consensus 260 ~~~~~~~~~~~i~~lre~le~~~ 282 (300)
.++...+...+|..-|-.-++++
T Consensus 78 ~~~~~~e~~~~~e~~r~~fekek 100 (228)
T PRK06800 78 FQEHVQQQMKEIEAARQQFQKEQ 100 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555544
No 325
>PRK12289 GTPase RsgA; Reviewed
Probab=29.76 E-value=44 Score=32.96 Aligned_cols=9 Identities=22% Similarity=0.062 Sum_probs=7.4
Q ss_pred EEEeCCCCc
Q 036659 30 KVIDTRWVR 38 (300)
Q Consensus 30 ~VIDTP~w~ 38 (300)
.+|||||++
T Consensus 227 ~liDTPG~~ 235 (352)
T PRK12289 227 LLADTPGFN 235 (352)
T ss_pred EEEeCCCcc
Confidence 799999664
No 326
>PLN02804 chalcone isomerase
Probab=29.73 E-value=58 Score=30.34 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHhchhhhc-ceEEEEEcC
Q 036659 81 RFSQEEEAALHSWQTLFGKNVFD-YMIVVFTGG 112 (300)
Q Consensus 81 rfT~EE~~al~~lq~lFG~~i~~-y~IVlFT~g 112 (300)
.+|++|..+|+.+...|..+.+. .++|+||+-
T Consensus 116 ~y~d~e~~aL~kf~~~Fk~~~fp~Gs~I~ft~~ 148 (206)
T PLN02804 116 KYEEEEEEALEKVVEFFQSKYFKKNSIITYHFP 148 (206)
T ss_pred CCcchHHHHHHHHHHHhCCCcCCCCCEEEEEec
Confidence 57899999999999999888765 899999963
No 327
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=29.53 E-value=2.3e+02 Score=23.99 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=24.3
Q ss_pred CCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhchhhhcceEEEEEcCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG~~i~~y~IVlFT~gD 113 (300)
.+.|++|+|+.+..+-|-++- .-+..++.... + .-.|||.|--|
T Consensus 71 ~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~D 116 (187)
T cd04129 71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKD 116 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChh
Confidence 577999999999743332221 12333333221 1 34677777666
No 328
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=29.36 E-value=6.2e+02 Score=26.31 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=44.7
Q ss_pred hhhhhhHHHHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHh
Q 036659 230 KVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRA 292 (300)
Q Consensus 230 ~~~~~~l~~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~~~~r~~~ 292 (300)
+.+++.-.++..|-.-+.....+..++++....+....+..+..+...|+++..+.+.++...
T Consensus 172 ~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 172 EKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555557777777777766677777777777777777777788878888777776666543
No 329
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.23 E-value=3.8e+02 Score=24.80 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 036659 272 RKLRENLERAQRE 284 (300)
Q Consensus 272 ~~lre~le~~~r~ 284 (300)
+.|+++++.++.+
T Consensus 142 ~~L~~~l~~~~~~ 154 (206)
T PRK10884 142 QKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 330
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=29.15 E-value=2.2e+02 Score=28.47 Aligned_cols=66 Identities=11% Similarity=0.059 Sum_probs=46.0
Q ss_pred EEEEEeCCCCcccC---cccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH------------HHHHHH
Q 036659 28 LEKVIDTRWVRHAI---ARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE------------EAALHS 92 (300)
Q Consensus 28 ~v~VIDTP~w~~~~---~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE------------~~al~~ 92 (300)
.+.|+|.++-..++ +|.|- .+.+.+.+|+..++.+ |+.+|+|.--.....-.+. .++++.
T Consensus 26 PlFV~eg~~~~~~I~smPG~~r--~s~d~l~~~~~~~~~~---Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~ 100 (320)
T cd04824 26 PIFITDNPDAKQPIDSLPGINR--YGVNRLEEFLRPLVAK---GLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKL 100 (320)
T ss_pred eEEEecCCCCccccCCCCCcee--eCHHHHHHHHHHHHHC---CCCEEEEeCCCccccCCcCccccccCCCChHHHHHHH
Confidence 67888887766666 45554 3567888999998877 9988877543211112233 789999
Q ss_pred HHHHhc
Q 036659 93 WQTLFG 98 (300)
Q Consensus 93 lq~lFG 98 (300)
+++.|.
T Consensus 101 iK~~~p 106 (320)
T cd04824 101 IREEFP 106 (320)
T ss_pred HHHhCC
Confidence 999994
No 331
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=28.98 E-value=1.1e+02 Score=30.53 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=25.2
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeC
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSV 78 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v 78 (300)
.+.+|||| ||.......+.++.....-+ .-.+|+|.|++.
T Consensus 67 ~i~lvD~p-------GL~~~a~~g~glg~~fL~~i----~~aD~li~VVd~ 106 (364)
T PRK09601 67 TIEFVDIA-------GLVKGASKGEGLGNQFLANI----REVDAIVHVVRC 106 (364)
T ss_pred eEEEEECC-------CCCCCCChHHHHHHHHHHHH----HhCCEEEEEEeC
Confidence 68999999 98864332233443333322 256799999885
No 332
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.91 E-value=2e+02 Score=30.19 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHHHHhHH
Q 036659 231 VVPNMLKETSRLEQQLTEE 249 (300)
Q Consensus 231 ~~~~~l~~~~~lE~q~~~e 249 (300)
.+.++-.+.+.||+||+..
T Consensus 70 ALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445777888888776
No 333
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=28.64 E-value=2.2e+02 Score=23.41 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 036659 253 PLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAE 293 (300)
Q Consensus 253 ~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~~~~r~~~~ 293 (300)
+|+.|++...+..+.-+--+.-++.-|+..++.++-|+-.+
T Consensus 42 rLkeEkKkAKAeqrA~EfEqRakehqErDEkElEERrKALe 82 (86)
T PF15437_consen 42 RLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERRKALE 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444445556677777777777666544
No 334
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=28.56 E-value=1.2e+02 Score=27.24 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=18.5
Q ss_pred ccCCCCCeEEEEEEeCCCCCCHHH
Q 036659 63 GMAKDGIHAVLVVFSVRSRFSQEE 86 (300)
Q Consensus 63 ~l~~pGpHA~LLV~~v~~rfT~EE 86 (300)
.....|.|++|||+.+.++-|-+.
T Consensus 72 ~~~yr~ad~iIlVyDvtn~~Sf~~ 95 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQN 95 (202)
T ss_pred HHHhCcCCEEEEEEECcChHHHHH
Confidence 345679999999999986766554
No 335
>PTZ00258 GTP-binding protein; Provisional
Probab=28.54 E-value=91 Score=31.44 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=25.9
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
-.+.+|||| ||.......+.++.....-+ ...+|+|+|++..
T Consensus 85 aqi~lvDtp-------GLv~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f 126 (390)
T PTZ00258 85 AQLDITDIA-------GLVKGASEGEGLGNAFLSHI----RAVDGIYHVVRAF 126 (390)
T ss_pred CCeEEEECC-------CcCcCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence 358999999 88753322333443333322 3578999999863
No 336
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=28.53 E-value=1.8e+02 Score=30.08 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=42.1
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-----CCHHHH-HHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-----FSQEEE-AALHSWQTL 96 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-----fT~EE~-~al~~lq~l 96 (300)
+.+-+.+++|||| | .-+|+. +...-.+-+ .|-+||++.+.- |..+-+ +.--.|...
T Consensus 81 et~k~~~tIiDaP-------G------HrdFvk-nmItGasqA----D~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t 142 (428)
T COG5256 81 ETDKYNFTIIDAP-------G------HRDFVK-NMITGASQA----DVAVLVVDARDGEFEAGFGVGGQTREHAFLART 142 (428)
T ss_pred ecCCceEEEeeCC-------c------hHHHHH-Hhhcchhhc----cEEEEEEECCCCccccccccCCchhHHHHHHHh
Confidence 3456689999999 4 123443 332222222 266666666522 212222 222235566
Q ss_pred hchhhhcceEEEEEcCCCCCC
Q 036659 97 FGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 97 FG~~i~~y~IVlFT~gD~Le~ 117 (300)
.| .++.||..+--|..+=
T Consensus 143 lG---i~~lIVavNKMD~v~w 160 (428)
T COG5256 143 LG---IKQLIVAVNKMDLVSW 160 (428)
T ss_pred cC---CceEEEEEEccccccc
Confidence 67 8899999998888753
No 337
>PLN02676 polyamine oxidase
Probab=28.33 E-value=1.6e+02 Score=29.90 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=24.6
Q ss_pred CCCCCeEEEEEEeCCC------CCCHHHH--HHHHHHHHHhchhhhc
Q 036659 65 AKDGIHAVLVVFSVRS------RFSQEEE--AALHSWQTLFGKNVFD 103 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~------rfT~EE~--~al~~lq~lFG~~i~~ 103 (300)
+.||.+ +|+++-.+. .+++++. .+++.+.++||.++.+
T Consensus 354 ~~~~~~-~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~ 399 (487)
T PLN02676 354 EYPGSN-VLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPE 399 (487)
T ss_pred CCCCCC-EEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 456665 455554431 3677664 5789999999977654
No 338
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=28.18 E-value=5.1e+02 Score=24.77 Aligned_cols=21 Identities=10% Similarity=0.545 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHHHHHHhHHH
Q 036659 267 SNDEIRKLRENLERAQRETEE 287 (300)
Q Consensus 267 ~~~~i~~lre~le~~~r~~~~ 287 (300)
+.++++|++..+++++...+.
T Consensus 166 s~~q~eK~~~k~~k~~~~~~~ 186 (258)
T cd07680 166 TPEQQKKLQDKVDKCKQDVQK 186 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666555443
No 339
>PTZ00335 tubulin alpha chain; Provisional
Probab=28.13 E-value=1.3e+02 Score=30.56 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=35.5
Q ss_pred CCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHHhchhhhcceEEEEEc
Q 036659 66 KDGIHAVLVVFSVRS-RFSQEEEAALHSWQTLFGKNVFDYMIVVFTG 111 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~-rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~ 111 (300)
.+.++.|+++.++++ .=|-==-..++.|..-|++.. ..+++||-.
T Consensus 129 cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~-~~~~~v~P~ 174 (448)
T PTZ00335 129 CTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKS-KLGFTIYPS 174 (448)
T ss_pred ccCccceeEeeccCCCccchHHHHHHHHHHHhccccc-eeeEEecCC
Confidence 478899999999985 436666788999999999865 677777764
No 340
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=28.06 E-value=63 Score=30.08 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=22.9
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIV 59 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~ 59 (300)
.++|+.++. ..+ +..+.+|||| |+......+....-.+.
T Consensus 150 ~g~T~~~~~---~~~-~~~~~l~DtP-------G~~~~~~~~~~~~~~l~ 188 (276)
T TIGR03596 150 PGVTKGQQW---IKL-SDGLELLDTP-------GILWPKFEDQEVGLKLA 188 (276)
T ss_pred CCeecceEE---EEe-CCCEEEEECC-------CcccCCCCchHHHHHHH
Confidence 345555432 233 3468999999 88666655554444433
No 341
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=27.74 E-value=1.2e+02 Score=30.45 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=44.8
Q ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhh
Q 036659 70 HAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLH 148 (300)
Q Consensus 70 HA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~ 148 (300)
.-+++|++|-+|. +-=+..+++|.+. .-+..+++||.|.-.- +.+.+++.. =..-+=-||=-|||+.|+
T Consensus 31 ~~~vivvqVH~r~-~yl~~li~sL~~~---~~I~~~llifSHd~~~----~ein~~v~~--I~Fc~v~QIf~P~S~ql~ 99 (356)
T PF05060_consen 31 DSIVIVVQVHNRP-EYLKLLIDSLSQA---RGIEEALLIFSHDFYS----EEINDLVQS--IDFCRVMQIFYPYSIQLY 99 (356)
T ss_pred CCEEEEEEECCcH-HHHHHHHHHHHHh---hCccceEEEEeccCCh----HHHHHHHHh--CCcceeEEEecccchhhC
Confidence 3456677777565 3334555666665 4567899999885432 357788865 234455678889998875
No 342
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=27.62 E-value=3.5e+02 Score=25.63 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=25.6
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 036659 260 AQLAQMKSNDEIRKLRENLERAQRETEELRKRAE 293 (300)
Q Consensus 260 ~~~~~~~~~~~i~~lre~le~~~r~~~~~r~~~~ 293 (300)
|++--++.+++|..|.+-|.++.+|..+.|....
T Consensus 24 A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq 57 (214)
T PF07795_consen 24 ANEELRKREEQIAHLKDLLKKAYQERDEAREQLQ 57 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456778899999999999888888877654
No 343
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.47 E-value=5.4e+02 Score=24.38 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=5.7
Q ss_pred HHHHHhchhhhcc
Q 036659 92 SWQTLFGKNVFDY 104 (300)
Q Consensus 92 ~lq~lFG~~i~~y 104 (300)
.+...+|+.+..+
T Consensus 35 ~~~~~~~~~~~~~ 47 (216)
T KOG1962|consen 35 RLKSGLAPQVLKT 47 (216)
T ss_pred HHHHhhhhHHHHH
Confidence 3444445544433
No 344
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=26.75 E-value=2.1e+02 Score=31.24 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=8.6
Q ss_pred hcHHHHHHHHHHHHHHH
Q 036659 266 KSNDEIRKLRENLERAQ 282 (300)
Q Consensus 266 ~~~~~i~~lre~le~~~ 282 (300)
+.+++|++++.+++-|+
T Consensus 361 elEEElk~~k~ea~~ar 377 (832)
T KOG2077|consen 361 ELEEELKKAKAEAEDAR 377 (832)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 345
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=26.67 E-value=2.7e+02 Score=29.95 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=20.4
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 036659 260 AQLAQMKSNDEIRKLRENLERAQRETEELRKRAEK 294 (300)
Q Consensus 260 ~~~~~~~~~~~i~~lre~le~~~r~~~~~r~~~~~ 294 (300)
.+....++.+++..+.+.+.++...-+.+......
T Consensus 252 l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 286 (759)
T PF01496_consen 252 LKKLLEKYAEELEAWYEYLRKEKEIYEALNKFAST 286 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33344455567777777777766555555544443
No 346
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=26.56 E-value=4.2e+02 Score=24.69 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=22.6
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLE 279 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le 279 (300)
++..+.+++...+-.-.+-+...+.-+.+|+..|+.|...|.
T Consensus 108 ~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 108 EIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444333333333334445577777777776665
No 347
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=26.04 E-value=4.9e+02 Score=23.45 Aligned_cols=29 Identities=38% Similarity=0.417 Sum_probs=16.5
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhHHHH
Q 036659 260 AQLAQMKSNDEIRKLRENLERAQRETEEL 288 (300)
Q Consensus 260 ~~~~~~~~~~~i~~lre~le~~~r~~~~~ 288 (300)
...++..|+++.++.+..-|...++++.+
T Consensus 96 re~~q~~~E~E~~~~~~KEe~~~~k~~~l 124 (157)
T PF15236_consen 96 REELQRQFEEEQRKQREKEEEQTRKTQEL 124 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667776666665555554444443
No 348
>PLN00220 tubulin beta chain; Provisional
Probab=26.03 E-value=2.1e+02 Score=29.06 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=34.5
Q ss_pred CCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcceEEEEEcC
Q 036659 66 KDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDYMIVVFTGG 112 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y~IVlFT~g 112 (300)
.+.++.|+++.++++-. |-==-..++.|..-|++. ...++.||...
T Consensus 127 cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~-~~~~~~v~P~~ 173 (447)
T PLN00220 127 CDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR-MMLTFSVFPSP 173 (447)
T ss_pred CcCcCceEEEEecCCCccccHHHHHHHHHHHhcccc-ceeeeEEECCC
Confidence 36788999999997433 444457788999999865 57788888764
No 349
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=25.99 E-value=5.3e+02 Score=23.81 Aligned_cols=11 Identities=0% Similarity=0.235 Sum_probs=7.1
Q ss_pred HHHHHHHHHHH
Q 036659 187 EQIWKLLSLVN 197 (300)
Q Consensus 187 ~Qv~eLL~~Ve 197 (300)
..+++|+++|-
T Consensus 8 ~k~q~L~dki~ 18 (207)
T PRK01005 8 DKLKQICDALR 18 (207)
T ss_pred HHHHHHHHHHH
Confidence 56667776664
No 350
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=25.87 E-value=1.2e+02 Score=33.15 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=46.3
Q ss_pred EEEEEEeCCCCcccCcccCCCCC--ChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSA--GSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~--~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+.++||-| |+..|-. -..++..-|.+--.---..|.|++|+++-| ....|--..-..+ .-..+ .-+.
T Consensus 412 qRMVLVDLP-------GvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAERSnVTDLV-sq~DP-~GrR 481 (980)
T KOG0447|consen 412 QRMVLVDLP-------GVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAERSIVTDLV-SQMDP-HGRR 481 (980)
T ss_pred ceeEEecCC-------chhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-CcchhhhhHHHHH-HhcCC-CCCe
Confidence 477899999 6654321 112222233322221235899999999977 6555543333333 32222 3468
Q ss_pred eEEEEEcCCCCCC
Q 036659 105 MIVVFTGGDELED 117 (300)
Q Consensus 105 ~IVlFT~gD~Le~ 117 (300)
||.|.|--|--+.
T Consensus 482 TIfVLTKVDlAEk 494 (980)
T KOG0447|consen 482 TIFVLTKVDLAEK 494 (980)
T ss_pred eEEEEeecchhhh
Confidence 9999998775443
No 351
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.72 E-value=3.9e+02 Score=27.27 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=52.3
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
..+..+.+|||+ |.... ...+.+++..-.. ..-||-.+||++..+ .. ..+..+...|.. ..
T Consensus 267 l~~~d~VLIDTa-------Grsqr---d~~~~~~l~~l~~--~~~~~~~~LVl~at~--~~---~~~~~~~~~f~~--~~ 327 (420)
T PRK14721 267 LRGKHMVLIDTV-------GMSQR---DQMLAEQIAMLSQ--CGTQVKHLLLLNATS--SG---DTLDEVISAYQG--HG 327 (420)
T ss_pred hcCCCEEEecCC-------CCCcc---hHHHHHHHHHHhc--cCCCceEEEEEcCCC--CH---HHHHHHHHHhcC--CC
Confidence 456789999999 76543 2345566665221 123778889998752 12 344455566653 66
Q ss_pred ceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 104 YMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 104 y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
..=++||.=|+-..- ..+=+.+.+
T Consensus 328 ~~~~I~TKlDEt~~~-G~~l~~~~~ 351 (420)
T PRK14721 328 IHGCIITKVDEAASL-GIALDAVIR 351 (420)
T ss_pred CCEEEEEeeeCCCCc-cHHHHHHHH
Confidence 777889998876543 345555544
No 352
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=25.66 E-value=69 Score=22.05 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHhchhhh
Q 036659 80 SRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 80 ~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.++|+||...|...-..||.+-|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W 24 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNW 24 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHH
Confidence 48999999999999999999833
No 353
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.60 E-value=6.8e+02 Score=24.91 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhHHHHhhhhhhhhHH---HHHHHHHHHhHHhhcc
Q 036659 177 NKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLK---ETSRLEQQLTEEQAAP 253 (300)
Q Consensus 177 Nk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v~~~~~~~~~~~l~---~~~~lE~q~~~eq~a~ 253 (300)
|++.++=.....-..-|+.|+.||-.- .+-.+. ..++..+++-...-+..+.+++.+ +-..+++++..|+.+.
T Consensus 83 Nk~e~dF~~l~~yNdYLE~vEdii~nL---~~~~d~-~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~ 158 (309)
T TIGR00570 83 NKREEDFPSLREYNDYLEEVEDIVYNL---TNNIDL-ENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEE 158 (309)
T ss_pred ccchhccCCHHHHHHHHHHHHHHHHHh---hcCCcH-HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHhcHHHHHHHHHHH
Q 036659 254 LKVEEAAQLAQMKSNDEIRKLRENL 278 (300)
Q Consensus 254 le~e~~~~~~~~~~~~~i~~lre~l 278 (300)
.++-+.+++..++-....+.-++.+
T Consensus 159 ~~rr~~~~~~e~ee~~~~~~~~~~~ 183 (309)
T TIGR00570 159 EQRRLLLQKEEEEQQMNKRKNKQAL 183 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 354
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=25.40 E-value=1.2e+02 Score=24.54 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=24.3
Q ss_pred EEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCC
Q 036659 172 CVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQ 206 (300)
Q Consensus 172 ~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~ 206 (300)
.++|+....+ +++..+++.+..++.++||.
T Consensus 11 ~~Il~p~l~e-----~~~~~~~~~~~~~i~~~gg~ 40 (97)
T CHL00123 11 MYLLKPDLNE-----EELLKWIENYKKLLRKRGAK 40 (97)
T ss_pred EEEECCCCCH-----HHHHHHHHHHHHHHHHCCCE
Confidence 3566765433 69999999999999999996
No 355
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=25.36 E-value=2e+02 Score=25.59 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=35.9
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQT 95 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~ 95 (300)
+.-.+++.| |.. ...+....|+..++.+ |.+++-+|+.++.-.+..+....+.+..
T Consensus 54 ~v~~~~~fp---------~g~-~~~~~k~~eve~A~~~---GAdevdvv~~~g~~~~~~~~~~~~ei~~ 109 (203)
T cd00959 54 KVCTVIGFP---------LGA-TTTEVKVAEAREAIAD---GADEIDMVINIGALKSGDYEAVYEEIAA 109 (203)
T ss_pred EEEEEEecC---------CCC-CcHHHHHHHHHHHHHc---CCCEEEEeecHHHHhCCCHHHHHHHHHH
Confidence 345567778 222 3456777889999876 9999999999983224444444444433
No 356
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=25.27 E-value=2.3e+02 Score=32.03 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=7.0
Q ss_pred HHHhcHHHHHHHHHHHHH
Q 036659 263 AQMKSNDEIRKLRENLER 280 (300)
Q Consensus 263 ~~~~~~~~i~~lre~le~ 280 (300)
..+...++.+.-+.+.|+
T Consensus 253 e~E~~~eEak~kkKekek 270 (1064)
T KOG1144|consen 253 EEEAQEEEAKEKKKEKEK 270 (1064)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444433333333
No 357
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=25.24 E-value=2.2e+02 Score=24.64 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=34.0
Q ss_pred ccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCH-HHHHHHHHHHHHhchhhhcceEEEEEcC
Q 036659 43 RLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQ-EEEAALHSWQTLFGKNVFDYMIVVFTGG 112 (300)
Q Consensus 43 glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~-EE~~al~~lq~lFG~~i~~y~IVlFT~g 112 (300)
|+|..-..-+. ..|+.+-+ ..-|.+.++++.+.. .+.. -.+.+.+++++.||.-..++. +||+.
T Consensus 67 ~~f~~l~p~~g-A~e~l~~L--~~~g~~~~~Itar~~-~~~~~~~~~k~~Wl~~hf~~i~~~~~--~~~~~ 131 (191)
T PF06941_consen 67 GFFSNLPPIPG-AVEALKKL--RDKGHEIVIITARPP-EFPDHSAEEKREWLERHFPFIPYDNL--IFTGD 131 (191)
T ss_dssp TTTTT--B-TT-HHHHHHHH--HTSTTEEEEEEE-SS-SSGCCCHHHHHHHHHHHHTHHHHCCE--EEESS
T ss_pred hhhcCCCccHH-HHHHHHHH--HHcCCcEEEEEecCc-cccchHHHHHHHHHHHHcCCCchheE--EEecC
Confidence 77753322222 33444333 344766666666544 3211 234678899999998776664 35643
No 358
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=25.21 E-value=4.2e+02 Score=29.10 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=10.5
Q ss_pred HHHHHhchhhhcceEEEEEcCCC
Q 036659 92 SWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 92 ~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
-|..|--....-.||-|=--+.+
T Consensus 463 CI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 463 CIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred HHHHhhhhhhcceeeeeeecccC
Confidence 33344334444456665543333
No 359
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=25.10 E-value=2.1e+02 Score=29.16 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=44.0
Q ss_pred CCCeEEEEEEeCCC-C--CCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 67 DGIHAVLVVFSVRS-R--FSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 67 pGpHA~LLV~~v~~-r--fT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
-|+.+++|=+++|+ - +|.++-..|.....-.|...-.+++++.|+.|+.=+
T Consensus 189 ~G~~~~vlDVk~G~gAfm~~~e~a~~LA~~~~~~g~~~g~~~~a~~t~md~plG 242 (405)
T TIGR02644 189 AGADAIVLDVKVGSGAFMKTLEDAKELAKLMVEIGKGAGRKTSALLTDMNQPLG 242 (405)
T ss_pred cCCCeEEEeecccCCCCcCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCcccc
Confidence 58999999999885 3 589999999988889999999999999999988744
No 360
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=24.99 E-value=4.2e+02 Score=27.53 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhHHHHhhhhhhhhHHHHHHHHHHHh
Q 036659 189 IWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLT 247 (300)
Q Consensus 189 v~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v~~~~~~~~~~~l~~~~~lE~q~~ 247 (300)
...+++-++++.. ++---.+-|..+++.+++...-+-+-..||.+ ..++||.||.
T Consensus 262 l~aileeL~eIk~---~q~~Leesye~Lke~~krdy~fi~etLQEERy-R~erLEEqLN 316 (455)
T KOG3850|consen 262 LDAILEELREIKE---TQALLEESYERLKEQIKRDYKFIAETLQEERY-RYERLEEQLN 316 (455)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 4455555555543 23344566777777776653322211223333 3445666653
No 361
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=24.81 E-value=4.4e+02 Score=29.26 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=11.9
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHhh
Q 036659 36 WVRHAIARLFDFSAGSKFVGKEIVTCI 62 (300)
Q Consensus 36 ~w~~~~~glfd~~~~~e~v~kEI~~ci 62 (300)
|||++- ++-+.+.+..-|.+-+..|-
T Consensus 150 ~~~et~-~~~~~~~s~~vVl~~~~~~r 175 (811)
T KOG4364|consen 150 WCWETR-DLKIMPSSVRVVLKLRRTCR 175 (811)
T ss_pred hhhccc-CcccCCCcchhHHhhhhccc
Confidence 344433 44444445555555444443
No 362
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=24.72 E-value=1.8e+02 Score=31.58 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQ 282 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~ 282 (300)
++..|++|-.+|..+..+.. +.++...++++.+|+..+++-+
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~---~~lk~~~~~el~~Lk~~vqkLE 46 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSV---EELKESHEEELNKLKSEVQKLE 46 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHH
Confidence 55667777555544443333 3455566788888888877763
No 363
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=24.72 E-value=1.1e+02 Score=28.00 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=14.9
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHH
Q 036659 68 GIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~al 90 (300)
..+.+|+|++.+ +.+..+-...
T Consensus 235 ~~d~vilV~~~~-~t~~~~~~~~ 256 (274)
T TIGR03029 235 RARGTLIVSRVN-ETRLHELTSL 256 (274)
T ss_pred hCCeEEEEEECC-CCCHHHHHHH
Confidence 345788888887 7776664433
No 364
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=24.65 E-value=1.8e+02 Score=30.72 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=58.7
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
..+|..||++||| |==|+| +++-+-+. -+.+-|+|+...--.- .++++. |-- ..
T Consensus 77 ~Y~~~~iNLLDTP-------GHeDFS---EDTYRtLt--------AvDsAvMVIDaAKGiE---~qT~KL----feV-cr 130 (528)
T COG4108 77 DYADCLVNLLDTP-------GHEDFS---EDTYRTLT--------AVDSAVMVIDAAKGIE---PQTLKL----FEV-CR 130 (528)
T ss_pred ccCCeEEeccCCC-------Cccccc---hhHHHHHH--------hhheeeEEEecccCcc---HHHHHH----HHH-Hh
Confidence 3579999999999 877765 44444332 2345567776652332 233332 221 11
Q ss_pred cceEEEEEcCCCCCCCcc-c--HHHhhhhCCCccccccccCCCchhhhhhcccccccccccc----hhhhhhcCCeEEEE
Q 036659 103 DYMIVVFTGGDELEDNDE-T--LEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGR----RGILQLCDNRCVLF 175 (300)
Q Consensus 103 ~y~IVlFT~gD~Le~~~~-t--ledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Ll~~C~~R~~~F 175 (300)
-+-|=+||.=..+.-.+. . |-|=|.+ .|+ ++-.-+.|-||. +|+...-.+..++|
T Consensus 131 lR~iPI~TFiNKlDR~~rdP~ELLdEiE~----~L~--------------i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y 192 (528)
T COG4108 131 LRDIPIFTFINKLDREGRDPLELLDEIEE----ELG--------------IQCAPITWPIGMGKDFKGVYHLYNDEVELY 192 (528)
T ss_pred hcCCceEEEeeccccccCChHHHHHHHHH----HhC--------------cceecccccccCCcccceeeeeccCEEEEe
Confidence 233444454333432211 1 2222222 111 122346677765 77888888888888
Q ss_pred eCCC
Q 036659 176 DNKT 179 (300)
Q Consensus 176 nNk~ 179 (300)
....
T Consensus 193 ~~~~ 196 (528)
T COG4108 193 ESGH 196 (528)
T ss_pred ccCC
Confidence 8753
No 365
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=24.56 E-value=3.6e+02 Score=24.82 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=29.4
Q ss_pred cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEc
Q 036659 64 MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTG 111 (300)
Q Consensus 64 l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~ 111 (300)
+..|....+++|+..+ ..+-.|-..+-.....+|-.+ .-||+..
T Consensus 155 l~d~~~~~~vlV~~p~-~~~~~e~~r~~~~L~~~g~~v---~gvV~N~ 198 (254)
T cd00550 155 LSDPERTSFRLVCIPE-KMSLYETERAIQELAKYGIDV---DAVIVNQ 198 (254)
T ss_pred hcCCcceEEEEEeCCC-hhHHHHHHHHHHHHHHCCCCC---CEEEEec
Confidence 4677888899999987 777777555555555667543 3455554
No 366
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=24.41 E-value=6.1e+02 Score=29.30 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHH
Q 036659 186 TEQIWKLLSLVNSV 199 (300)
Q Consensus 186 ~~Qv~eLL~~Ve~m 199 (300)
..|.++|+++++.-
T Consensus 1036 ~rq~~el~~~~~~~ 1049 (1189)
T KOG1265|consen 1036 NRQTQELLEMRREQ 1049 (1189)
T ss_pred HHHHHHHHHHHHHH
Confidence 35788888877653
No 367
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.24 E-value=1.7e+02 Score=25.73 Aligned_cols=9 Identities=22% Similarity=-0.086 Sum_probs=7.9
Q ss_pred EEEEEEeCC
Q 036659 27 VLEKVIDTR 35 (300)
Q Consensus 27 r~v~VIDTP 35 (300)
..+.|||||
T Consensus 115 ~D~viiD~p 123 (246)
T TIGR03371 115 RDWVLIDVP 123 (246)
T ss_pred CCEEEEECC
Confidence 379999999
No 368
>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Probab=24.05 E-value=1.7e+02 Score=23.00 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=26.1
Q ss_pred CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch--hhhcceEEEEEcCCCC
Q 036659 65 AKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK--NVFDYMIVVFTGGDEL 115 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~--~i~~y~IVlFT~gD~L 115 (300)
-.||||+||---.-. -..+.......|-..|.+ +.-..+-|.+|.++.+
T Consensus 38 ~~pg~hvil~~~~~~--~~~~~l~~AA~laa~~Ska~~~~~~v~V~yt~~k~v 88 (90)
T PF05670_consen 38 DFPGPHVILRNNPGD--EPPPTLQEAAQLAASYSKAWKKGEKVEVDYTQGKYV 88 (90)
T ss_pred CCCCCEEEEECCCCc--cchHHHHHHHHHHHHhCHhhccCCCeEEEEeehHhc
Confidence 358999776544322 121133344445555655 3334566777776654
No 369
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=23.91 E-value=1.4e+02 Score=30.83 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=44.6
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHh-------hccCCCCCeEEEEEEeCCCCCCHHHHHH----HHH
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTC-------IGMAKDGIHAVLVVFSVRSRFSQEEEAA----LHS 92 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~c-------i~l~~pGpHA~LLV~~v~~rfT~EE~~a----l~~ 92 (300)
+.|+.|.+|| ...++..+...+.+.+.++ ...+||..|+...-+.+. +.++-.+ ++.
T Consensus 358 ~~gk~vvlvD---------D~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~---~~~~l~~~~~~~~e 425 (479)
T PRK09123 358 IEGKRVVLVD---------DSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTP---ERSKLLAATHSLEE 425 (479)
T ss_pred cCCCEEEEEe---------ceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCC---CHHHHHHcCCCHHH
Confidence 6799999999 5577777766666665543 234677788888777665 3333322 667
Q ss_pred HHHHhchhhhc
Q 036659 93 WQTLFGKNVFD 103 (300)
Q Consensus 93 lq~lFG~~i~~ 103 (300)
+.+.+|.+.+.
T Consensus 426 i~~~igadsl~ 436 (479)
T PRK09123 426 MAEYIGADSLA 436 (479)
T ss_pred HHHHhCCCeEe
Confidence 77777765443
No 370
>PRK09602 translation-associated GTPase; Reviewed
Probab=23.88 E-value=1.4e+02 Score=29.89 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=26.0
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
..+.++||| ||........-++.....-+. ..+|+|+|+++.
T Consensus 72 ~~i~i~D~a-------Gl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVA-------GLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcC-------CcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence 568899999 887532222233333322232 567999999985
No 371
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.76 E-value=6.9e+02 Score=25.47 Aligned_cols=6 Identities=0% Similarity=0.102 Sum_probs=2.2
Q ss_pred HHHHHH
Q 036659 275 RENLER 280 (300)
Q Consensus 275 re~le~ 280 (300)
+.++++
T Consensus 103 ~~~Ie~ 108 (445)
T PRK13428 103 ARQVQL 108 (445)
T ss_pred HHHHHH
Confidence 333333
No 372
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=23.62 E-value=3e+02 Score=22.99 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=26.9
Q ss_pred CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
.+.|+|++|+++.++-|=++ ...++.+....+. -.--|||.-.+++|.
T Consensus 64 ~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~--~~~piilvgnK~Dl~ 112 (158)
T cd04103 64 SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI--SEIPLILVGTQDAIS 112 (158)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEeeHHHhh
Confidence 47899999999986665555 3333444333221 122344444466564
No 373
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.53 E-value=7.6e+02 Score=24.76 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=48.7
Q ss_pred CCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhHHHHhhhhhhhhHH-HHHHHHHHHhHHhhcchH
Q 036659 177 NKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLK-ETSRLEQQLTEEQAAPLK 255 (300)
Q Consensus 177 Nk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v~~~~~~~~~~~l~-~~~~lE~q~~~eq~a~le 255 (300)
...+|-+..-+|...+.+.|+.+.....+ |-+.+..+ +.+-.+.++. -|..++ .+..+=++|...++.--+
T Consensus 213 ~d~kDWR~hleqm~~~~~~I~~~~~~~~~--~L~kl~~~----i~~~lekI~s--REk~iN~qle~l~~eYr~~~~~ls~ 284 (359)
T PF10498_consen 213 ADAKDWRSHLEQMKQHKKSIESALPETKS--QLDKLQQD----ISKTLEKIES--REKYINNQLEPLIQEYRSAQDELSE 284 (359)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHH----HHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33355555668999999999888765543 22233333 3333222221 112222 233333344443333333
Q ss_pred HHHHHHHHHH---hcHHHHHHHHHHHHHHHHhH
Q 036659 256 VEEAAQLAQM---KSNDEIRKLRENLERAQRET 285 (300)
Q Consensus 256 ~e~~~~~~~~---~~~~~i~~lre~le~~~r~~ 285 (300)
..++.+.+.. +...++..+.++||+-+++.
T Consensus 285 ~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 285 VQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332 33345667777777776443
No 374
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=23.43 E-value=4.4e+02 Score=24.51 Aligned_cols=25 Identities=48% Similarity=0.667 Sum_probs=13.7
Q ss_pred hhhHH-HHHHHHHHHhHHhhcchHHH
Q 036659 233 PNMLK-ETSRLEQQLTEEQAAPLKVE 257 (300)
Q Consensus 233 ~~~l~-~~~~lE~q~~~eq~a~le~e 257 (300)
..+|. +..+|.+++..|.+.....|
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~E 161 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLE 161 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 66677777666644333333
No 375
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=23.29 E-value=4.2e+02 Score=21.71 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=26.8
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 68 GIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
+.+++|+|+.++...+..+......+. ..| .-.|+|++--|-+
T Consensus 12 ~aD~vl~V~D~~~~~~~~~~~l~~~~~-~~~----~p~iiv~NK~Dl~ 54 (156)
T cd01859 12 ESDVVLEVLDARDPELTRSRKLERYVL-ELG----KKLLIVLNKADLV 54 (156)
T ss_pred hCCEEEEEeeCCCCcccCCHHHHHHHH-hCC----CcEEEEEEhHHhC
Confidence 567999999987445555543333221 112 4678999988854
No 376
>COG1162 Predicted GTPases [General function prediction only]
Probab=23.20 E-value=1.1e+02 Score=30.16 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=13.7
Q ss_pred EEEeCCCCcccCcccCCC-CCChHHHHH
Q 036659 30 KVIDTRWVRHAIARLFDF-SAGSKFVGK 56 (300)
Q Consensus 30 ~VIDTP~w~~~~~glfd~-~~~~e~v~k 56 (300)
.||||||++. |+. ..+++++..
T Consensus 219 ~iiDTPGf~~-----~~l~~~~~e~l~~ 241 (301)
T COG1162 219 WIIDTPGFRS-----LGLAHLEPEDLVQ 241 (301)
T ss_pred EEEeCCCCCc-----cCcccCCHHHHHH
Confidence 3899997643 555 456665554
No 377
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=23.08 E-value=66 Score=23.49 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=28.7
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 68 GIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
|.+++=+-++.| ++|.++..+|..+-+-||...++
T Consensus 8 g~~~v~~~~~~G-~i~~~~l~~la~ia~~yg~~~ir 42 (69)
T PF03460_consen 8 GFYMVRIRIPGG-RISAEQLRALAEIAEKYGDGEIR 42 (69)
T ss_dssp TEEEEEEB-GGG-EEEHHHHHHHHHHHHHHSTSEEE
T ss_pred eEEEEEEeCCCE-EECHHHHHHHHHHHHHhCCCeEE
Confidence 558888888887 99999999999999999965443
No 378
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=23.02 E-value=6e+02 Score=23.40 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHhh------cchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhHH
Q 036659 238 ETSRLEQQLTEEQA------APLKVEEAAQLAQMKSNDEIRKLRENLERAQRETE 286 (300)
Q Consensus 238 ~~~~lE~q~~~eq~------a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~~ 286 (300)
.++.|+.+|.+-.+ .+++.-+..+.++...+.+|+.|++++.+.+.+..
T Consensus 48 q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~ 102 (206)
T PF14988_consen 48 QTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHA 102 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667776654322 22455556777788888888888888887655443
No 379
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=22.94 E-value=3.3e+02 Score=24.93 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=13.6
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHH
Q 036659 260 AQLAQMKSNDEIRKLRENLERAQ 282 (300)
Q Consensus 260 ~~~~~~~~~~~i~~lre~le~~~ 282 (300)
++..+.+.+.++..|+++++..+
T Consensus 151 a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 151 AKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566677777766654
No 380
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=22.93 E-value=3.4e+02 Score=27.33 Aligned_cols=13 Identities=8% Similarity=-0.002 Sum_probs=6.8
Q ss_pred hhhhhhcCCeEEE
Q 036659 162 RGILQLCDNRCVL 174 (300)
Q Consensus 162 ~~Ll~~C~~R~~~ 174 (300)
+++..+-++++.-
T Consensus 245 ~k~akk~d~~ffq 257 (445)
T KOG2891|consen 245 MKLAKKGDDGFFQ 257 (445)
T ss_pred chHHhhcCCcccc
Confidence 3445555666543
No 381
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=22.59 E-value=2.4e+02 Score=23.79 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=39.7
Q ss_pred ccc-CCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcc
Q 036659 42 ARL-FDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDY 104 (300)
Q Consensus 42 ~gl-fd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y 104 (300)
+|. |.....-+++.++|..-+.-.++=| +++++...++.+.. ...+.+.+.||...+..
T Consensus 61 Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~----VIl~l~~~~~~~~~~~l~~~l~~~~g~~l~~~ 121 (135)
T smart00148 61 HGHTFTLPIKLSEVLEAIKDFAFVTSPYP----VILSLENHCSPDQQAKMAQMFKEIFGDMLYTP 121 (135)
T ss_pred ECCcccccEEHHHHHHHHHHHHHhCCCCc----EEEeehhhCCHHHHHHHHHHHHHHHhHhhcCC
Confidence 366 6666777899999988877654433 44555545566654 56678999999976543
No 382
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=22.44 E-value=2.5e+02 Score=30.93 Aligned_cols=42 Identities=31% Similarity=0.468 Sum_probs=22.4
Q ss_pred HHHHHHHHHhHH---hhcchHHHHHHHHHHHhcHHHHHHHHHHHH
Q 036659 238 ETSRLEQQLTEE---QAAPLKVEEAAQLAQMKSNDEIRKLRENLE 279 (300)
Q Consensus 238 ~~~~lE~q~~~e---q~a~le~e~~~~~~~~~~~~~i~~lre~le 279 (300)
++++++++++.+ .+|+.+.-++.++...+++.+|.++++.|+
T Consensus 826 ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~ 870 (874)
T PRK05729 826 EIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLA 870 (874)
T ss_pred HHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555443 245544444444444566666666665554
No 383
>PRK10302 hypothetical protein; Provisional
Probab=22.40 E-value=4.6e+02 Score=25.16 Aligned_cols=14 Identities=0% Similarity=0.086 Sum_probs=10.5
Q ss_pred CCeEEEEeCCCcch
Q 036659 169 DNRCVLFDNKTKDE 182 (300)
Q Consensus 169 ~~R~~~FnNk~~de 182 (300)
+.-|+.|||.....
T Consensus 227 ~~~yvff~n~~~~~ 240 (272)
T PRK10302 227 TTPYLFIHTPDIAQ 240 (272)
T ss_pred CCEEEEEeCCchhh
Confidence 46799999986543
No 384
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=22.38 E-value=2e+02 Score=25.38 Aligned_cols=38 Identities=8% Similarity=0.029 Sum_probs=27.4
Q ss_pred eEEEEEEeCCC-CCCHHHHHHHHHHHHHhchhhhcceEEEEE
Q 036659 70 HAVLVVFSVRS-RFSQEEEAALHSWQTLFGKNVFDYMIVVFT 110 (300)
Q Consensus 70 HA~LLV~~v~~-rfT~EE~~al~~lq~lFG~~i~~y~IVlFT 110 (300)
++|++|.+++. .-|.-=-..++.++ -||..+ ++++++=
T Consensus 84 d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~--~~~~v~P 122 (192)
T smart00864 84 DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT--VAVVTKP 122 (192)
T ss_pred CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE--EEEEEEe
Confidence 99999999984 44555556677787 788766 6666654
No 385
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.27 E-value=7.9e+02 Score=25.22 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q 036659 187 EQIWKLLSLVNSVAVQNDGQ 206 (300)
Q Consensus 187 ~Qv~eLL~~Ve~mv~~NgG~ 206 (300)
.-.+=|-.+|.+++.+|.|-
T Consensus 68 aa~~llq~kirk~~e~~egl 87 (401)
T PF06785_consen 68 AAGQLLQTKIRKITEKDEGL 87 (401)
T ss_pred HHHHHHHHHHHHHHhccHHH
Confidence 33444558999999998884
No 386
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.26 E-value=5.1e+02 Score=27.73 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=8.6
Q ss_pred hhhhhHH-HHHHHHHHHh
Q 036659 231 VVPNMLK-ETSRLEQQLT 247 (300)
Q Consensus 231 ~~~~~l~-~~~~lE~q~~ 247 (300)
.+.++|. .+..+-.||.
T Consensus 242 ~F~~eL~~Ai~eiRaqye 259 (546)
T KOG0977|consen 242 YFKNELALAIREIRAQYE 259 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4455555 5555555543
No 387
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=22.24 E-value=2.1e+02 Score=29.02 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=35.8
Q ss_pred CCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcceEEEEEcC
Q 036659 66 KDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDYMIVVFTGG 112 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y~IVlFT~g 112 (300)
.+.+..|+++.++++-. |.==-..++.|..-|++.. .++.+||-..
T Consensus 128 cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~-~~~~~v~P~~ 174 (434)
T cd02186 128 CTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKS-KLEFTVYPSP 174 (434)
T ss_pred CCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccc-eeeEEEeCCC
Confidence 47889999999998644 6666788899999998654 6777777653
No 388
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=22.22 E-value=1.1e+02 Score=23.45 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhhcceEEEEEcCC
Q 036659 68 GIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~~y~IVlFT~gD 113 (300)
+.+|+++|+.+...-|-+.-. .+.++..+-+...---+|||-|+-|
T Consensus 73 ~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 678999999987433334322 2233443333222234677777654
No 389
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.11 E-value=1.3e+03 Score=26.93 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=55.2
Q ss_pred hhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhHHHHhhhhhhhhHHHHHHHHHHHhHHhhcchHHHHHHHH
Q 036659 183 AKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQL 262 (300)
Q Consensus 183 ~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v~~~~~~~~~~~l~~~~~lE~q~~~eq~a~le~e~~~~~ 262 (300)
.+-+.||.+|-++++-+-.+.... ..-..++++-- =+.++++ +.-..+......|+++|.. +|.+++ .++.
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR~ED---k~Kl~Elekmk-iqleqlq-EfkSkim~qqa~Lqrel~r---aR~e~k-eaqe 297 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKRAED---KAKLKELEKMK-IQLEQLQ-EFKSKIMEQQADLQRELKR---ARKEAK-EAQE 297 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHH-HHHH
Confidence 446789999999998876543221 01112222100 0111111 1111222255566666644 344444 4778
Q ss_pred HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 036659 263 AQMKSNDEIRKLRENLERAQRETEELRKRAE 293 (300)
Q Consensus 263 ~~~~~~~~i~~lre~le~~~r~~~~~r~~~~ 293 (300)
++.+|..++-.+-+..|.+--..||.-++|+
T Consensus 298 ~ke~~k~emad~ad~iEmaTldKEmAEERae 328 (1243)
T KOG0971|consen 298 AKERYKEEMADTADAIEMATLDKEMAEERAE 328 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888888888777555555555554
No 390
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=22.07 E-value=5.7e+02 Score=22.79 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=10.9
Q ss_pred HHHHHhcHHHHHHHHHHHHHH
Q 036659 261 QLAQMKSNDEIRKLRENLERA 281 (300)
Q Consensus 261 ~~~~~~~~~~i~~lre~le~~ 281 (300)
..+..++.+-|+++.+-+++.
T Consensus 134 ~~l~er~~e~l~~~~e~ver~ 154 (158)
T PF09744_consen 134 NRLHERERELLRKLKEHVERQ 154 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555543
No 391
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.04 E-value=57 Score=33.86 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=43.9
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhh------ccCCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHHhchh
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCI------GMAKDGIHAVLVVFSVR-SRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci------~l~~pGpHA~LLV~~v~-~rfT~EE~~al~~lq~lFG~~ 100 (300)
.|++|||| |+...... -|.+.. .-...-...++|+|... -..|.|=++++..++ |
T Consensus 148 ~vtiVdtP-------GILsgeKQ------risR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G-- 209 (532)
T KOG1954|consen 148 SVTIVDTP-------GILSGEKQ------RISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---G-- 209 (532)
T ss_pred heeeeccC-------cccccchh------cccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---C--
Confidence 78999999 66543211 022211 11234556778887654 367888888877764 3
Q ss_pred hhcceEEEEEcCCCCCC
Q 036659 101 VFDYMIVVFTGGDELED 117 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le~ 117 (300)
--+.+-||.--.|..+.
T Consensus 210 ~EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 210 HEDKIRVVLNKADQVDT 226 (532)
T ss_pred CcceeEEEeccccccCH
Confidence 23567777777787754
No 392
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.96 E-value=2e+02 Score=23.80 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 036659 254 LKVEEAAQLAQMKSNDEIRKLRENLERA 281 (300)
Q Consensus 254 le~e~~~~~~~~~~~~~i~~lre~le~~ 281 (300)
+++-.++..++..-++.|++|+.+|++.
T Consensus 12 ~~Vl~R~~~l~~~E~~Ri~kLk~~L~~e 39 (118)
T PF02318_consen 12 LQVLQRDEELRKKEEERIRKLKQELQKE 39 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666668899999999643
No 393
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.90 E-value=8e+02 Score=24.45 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=17.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHhHH
Q 036659 264 QMKSNDEIRKLRENLERAQRETE 286 (300)
Q Consensus 264 ~~~~~~~i~~lre~le~~~r~~~ 286 (300)
-++.+.+|..++.+||+.++.+.
T Consensus 111 ie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 111 IEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566789999999999886543
No 394
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=21.83 E-value=3.6e+02 Score=28.80 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHcCCC
Q 036659 191 KLLSLVNSVAVQNDGQ 206 (300)
Q Consensus 191 eLL~~Ve~mv~~NgG~ 206 (300)
-+++..+.+..-|.|+
T Consensus 467 ~a~~p~d~l~~~n~~~ 482 (641)
T KOG3915|consen 467 TARDPLDKLSLTNHGQ 482 (641)
T ss_pred cccChhhhhccCCCCC
Confidence 3455556666666443
No 395
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=21.77 E-value=3.8e+02 Score=26.84 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=45.4
Q ss_pred EEEEEEeCCCCcccC---cccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-----------HHHHHH
Q 036659 27 VLEKVIDTRWVRHAI---ARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-----------EAALHS 92 (300)
Q Consensus 27 r~v~VIDTP~w~~~~---~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-----------~~al~~ 92 (300)
..+.|.|.+.-..++ +|.|- .+.+.+.+|+..++.+ |+.+|+|.--+....-.+. .++++.
T Consensus 28 ~PlFv~e~~~~~~~I~smPg~~r--~s~d~l~~~v~~~~~~---Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~ 102 (320)
T cd04823 28 LPLFVHEGENQREPIPSMPGVFR--LSIDELLKEAEEAVDL---GIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRA 102 (320)
T ss_pred eeEEEecCCCCccccCCCCCcee--eCHHHHHHHHHHHHHc---CCCEEEEecCCCcccCCcccccccCCCChHHHHHHH
Confidence 367788877666655 45554 3568899999998876 9999887654321111111 689999
Q ss_pred HHHHhc
Q 036659 93 WQTLFG 98 (300)
Q Consensus 93 lq~lFG 98 (300)
+++.|.
T Consensus 103 iK~~~p 108 (320)
T cd04823 103 IKEAFP 108 (320)
T ss_pred HHHhCC
Confidence 999994
No 396
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=21.67 E-value=4.6e+02 Score=21.57 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=23.4
Q ss_pred eEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCC
Q 036659 70 HAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 70 HA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD 113 (300)
+.+++|+... ..+-.. ..+++.+....+ ...+.+|+.+-+
T Consensus 68 D~vviv~~~~-~~s~~~~~~~l~~l~~~~~---~~~~~lVvN~~~ 108 (139)
T cd02038 68 DEVIVVTTPE-PTSITDAYALIKKLAKQLR---VLNFRVVVNRAE 108 (139)
T ss_pred CeEEEEcCCC-hhHHHHHHHHHHHHHHhcC---CCCEEEEEeCCC
Confidence 4678887765 565544 445555554332 335667777654
No 397
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=21.60 E-value=2.9e+02 Score=27.88 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=34.4
Q ss_pred CCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHHhchhhhcceEEEEEcC
Q 036659 65 AKDGIHAVLVVFSVRSR-FSQEEEAALHSWQTLFGKNVFDYMIVVFTGG 112 (300)
Q Consensus 65 ~~pGpHA~LLV~~v~~r-fT~EE~~al~~lq~lFG~~i~~y~IVlFT~g 112 (300)
..+.++.|+++.++++- =|-==-..++.|..-|++.+ .++.+||-..
T Consensus 125 ~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~-~~~~~V~P~~ 172 (425)
T cd02187 125 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI-MATFSVFPSP 172 (425)
T ss_pred cCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcc-eEEEEEecCC
Confidence 34789999999999742 23444677899999998764 6777777643
No 398
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=21.54 E-value=2.7e+02 Score=23.44 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=43.0
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhcc-CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc--
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD-- 103 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l-~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~-- 103 (300)
-.+.+.++|.. -.++.....=...+++..+... +..| |.-+||+. + .+++-....-..++.+|......
T Consensus 64 ~~L~i~~~~~g-----p~l~f~i~~v~~~~~~~~~~~~~~~~~-~~P~li~~-~-~~~~~~~~~k~~l~~~F~~~~~~~~ 135 (180)
T smart00879 64 LNLTIYRLPNG-----PTLDFKILNVSLRKELKGFKTGNCLTG-SRPLLIFN-N-FFTELGKLIKELFQDLFPGPPEHKK 135 (180)
T ss_pred ceEEEEECCCC-----CcEEEEEECcccHhhhhhhhcCCCcCC-CccEEEEC-C-CCCchHHHHHHHHHHHCCCCCcccc
Confidence 36889999843 2233333323344566543221 1222 45577775 2 44554555555678888766543
Q ss_pred -----ceEEEEEcCC
Q 036659 104 -----YMIVVFTGGD 113 (300)
Q Consensus 104 -----y~IVlFT~gD 113 (300)
.-+|+|+..+
T Consensus 136 ~~~~~~rvi~f~~~~ 150 (180)
T smart00879 136 SLPGLRRVVTFSNQD 150 (180)
T ss_pred ccCCCCEEEEEEecC
Confidence 5667777544
No 399
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=21.48 E-value=4.7e+02 Score=27.29 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=41.4
Q ss_pred hhcCCeEEEEeCCCc-chhhchHHHHHHHHHHHHHHHHcC--C-----------CCCChHHHHHHHHhhhhh
Q 036659 166 QLCDNRCVLFDNKTK-DEAKRTEQIWKLLSLVNSVAVQND--G-----------QPYTDDIFVELKLLFLPF 223 (300)
Q Consensus 166 ~~C~~R~~~FnNk~~-de~~~~~Qv~eLL~~Ve~mv~~Ng--G-----------~~yt~e~f~e~e~~~~~~ 223 (300)
-.|.++.++.||..- .|.++..-+.++-.++.+-+...+ | .+|..+|.+++++.+..+
T Consensus 120 ~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 120 LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 469999999999853 334556777777777777665542 2 377788999988877665
No 400
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=21.48 E-value=2.9e+02 Score=22.66 Aligned_cols=40 Identities=10% Similarity=-0.038 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhhcceEEEEEcCCC
Q 036659 70 HAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 70 HA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
+.+|+|+... ..+-.+-. +++.+.. .-.....||++.-+.
T Consensus 86 d~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~~iv~N~~~~ 126 (179)
T cd02036 86 DEALLVTTPE-ISSLRDADRVKGLLEA----LGIKVVGVIVNRVRP 126 (179)
T ss_pred CcEEEEeCCC-cchHHHHHHHHHHHHH----cCCceEEEEEeCCcc
Confidence 3577777765 55554432 3333333 123456677776543
No 401
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=21.43 E-value=6.7e+02 Score=23.38 Aligned_cols=16 Identities=31% Similarity=0.825 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 036659 269 DEIRKLRENLERAQRE 284 (300)
Q Consensus 269 ~~i~~lre~le~~~r~ 284 (300)
+++.+++.+++++...
T Consensus 168 ~eleK~~~k~~k~~~~ 183 (258)
T cd07655 168 DQVKKLQDKVEKCKQE 183 (258)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666555443
No 402
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=21.35 E-value=1.3e+02 Score=24.74 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=33.2
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 68 GIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
..+++|+|+.++..++..+....+.+...+ . -+..|+|++--|-+.
T Consensus 11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~-~--~k~~iivlNK~DL~~ 56 (141)
T cd01857 11 RSDIVVQIVDARNPLLFRPPDLERYVKEVD-P--RKKNILLLNKADLLT 56 (141)
T ss_pred hCCEEEEEEEccCCcccCCHHHHHHHHhcc-C--CCcEEEEEechhcCC
Confidence 567999999998777877776666666543 1 247788999888543
No 403
>PF08829 AlphaC_N: Alpha C protein N terminal; InterPro: IPR014933 The alpha C protein (ACP) is found in Streptococcus and acts as an invasin which plays a role in the internalisation and translocation of the organism across human epithelial surfaces. Group B Streptococcus is the leading cause of diseases including bacterial pneumonia, sepsis and meningitis. The N-terminal of ACP is associated with virulence and forms a beta sandwich and a three helix bundle [, , ]. ; PDB: 1YWM_A 2O0I_1.
Probab=21.26 E-value=3.5e+02 Score=25.19 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhHHHHhh-----hhhhhhHHHHHHHHHHH
Q 036659 192 LLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEK-----KVVPNMLKETSRLEQQL 246 (300)
Q Consensus 192 LL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v~~~~~-----~~~~~~l~~~~~lE~q~ 246 (300)
|+++|+++...-...-|++.--.++...+.+--.++++ --+.+++-++..||++|
T Consensus 125 lrdkIdeV~~ka~Dpkws~gsrdeVl~gLe~IK~DidnnPktq~dI~~kI~eVn~leK~L 184 (194)
T PF08829_consen 125 LRDKIDEVKKKANDPKWSEGSRDEVLEGLEKIKNDIDNNPKTQPDIDNKIIEVNELEKKL 184 (194)
T ss_dssp HHHHHHHHHHHHTSTTB-HHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcccCCCcCcccHHHHHHHHHHHHHHhhcCCCcccchHHHHHHhhhhhhcc
Confidence 88999999988877789999888888777666555553 13445555777777775
No 404
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=21.22 E-value=5.5e+02 Score=22.29 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 036659 188 QIWKLLSLVN 197 (300)
Q Consensus 188 Qv~eLL~~Ve 197 (300)
.+|.++..+=
T Consensus 11 ~~w~~i~f~i 20 (167)
T PRK14475 11 EFWVGAGLLI 20 (167)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 405
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=21.15 E-value=4.8e+02 Score=24.81 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=56.6
Q ss_pred eeeCCEEEEEEeCCC-CcccCcccCCCCCChH-HH------HHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHH
Q 036659 22 IRIQVVLEKVIDTRW-VRHAIARLFDFSAGSK-FV------GKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSW 93 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~-w~~~~~glfd~~~~~e-~v------~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~l 93 (300)
..++|+.|.++|.+. +...+.+++....... ++ ..-+..++.. -.|.++|+== ..+.++..++.
T Consensus 142 i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~--~~P~villDE----~~~~e~~~~l~-- 213 (270)
T TIGR02858 142 LGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRS--MSPDVIVVDE----IGREEDVEALL-- 213 (270)
T ss_pred EEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHh--CCCCEEEEeC----CCcHHHHHHHH--
Confidence 467899999998653 2222233333222110 00 1123333321 2566655422 33444433332
Q ss_pred HHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhh-hcCCeE
Q 036659 94 QTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQ-LCDNRC 172 (300)
Q Consensus 94 q~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~-~C~~R~ 172 (300)
...- -.+++|+-||++ ++++...+ ..|+. |++ ..-.|+
T Consensus 214 -~~~~---~G~~vI~ttH~~-------~~~~~~~r---~~~~~---------------------------l~~~~~~~r~ 252 (270)
T TIGR02858 214 -EALH---AGVSIIATAHGR-------DVEDLYKR---PVFKE---------------------------LIENEAFERY 252 (270)
T ss_pred -HHHh---CCCEEEEEechh-------HHHHHHhC---hHHHH---------------------------HHhcCceEEE
Confidence 2221 247788888853 45666554 45776 774 467899
Q ss_pred EEEeCCC
Q 036659 173 VLFDNKT 179 (300)
Q Consensus 173 ~~FnNk~ 179 (300)
++++++.
T Consensus 253 i~L~~~~ 259 (270)
T TIGR02858 253 VVLSRRK 259 (270)
T ss_pred EEEecCC
Confidence 9999863
No 406
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.89 E-value=1.8e+02 Score=26.45 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=16.5
Q ss_pred hcHHHHHHHHHHHHHHHHhHHHHHHH
Q 036659 266 KSNDEIRKLRENLERAQRETEELRKR 291 (300)
Q Consensus 266 ~~~~~i~~lre~le~~~r~~~~~r~~ 291 (300)
+-+++|.-||.-|-...|..-++|++
T Consensus 40 KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 40 KVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34567777777766666666666654
No 407
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=20.77 E-value=3.1e+02 Score=27.90 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcceEEEEE
Q 036659 66 KDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDYMIVVFT 110 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y~IVlFT 110 (300)
.+.++.|+++.++++-. |-==-..++.|.+.|++.. ..+++||-
T Consensus 123 cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~-~~~~~v~P 167 (446)
T cd02189 123 CDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESL-LLNIVVWP 167 (446)
T ss_pred CCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccc-eeeeeccC
Confidence 37889999999998533 5555678899999999874 45666665
No 408
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.61 E-value=4.1e+02 Score=20.56 Aligned_cols=35 Identities=31% Similarity=0.326 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhHHHHH
Q 036659 254 LKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELR 289 (300)
Q Consensus 254 le~e~~~~~~~~~~~~~i~~lre~le~~~r~~~~~r 289 (300)
.|+...+..+...+ .++.+|+++++.-+++.+..|
T Consensus 33 ~ERd~~~~~l~~a~-~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 33 RERDSAERQLGDAY-EENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 35555667777776 568888888888777766554
No 409
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=20.60 E-value=3.5e+02 Score=25.55 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=39.1
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhh
Q 036659 45 FDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNV 101 (300)
Q Consensus 45 fd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i 101 (300)
+-++..-.++.+.|.+..-...|.| | ++++...++.+.+ .+.+.+++.||...
T Consensus 66 ~ts~i~f~dvl~~I~~~aF~~s~yP--v--ILslE~hcs~~qQ~~~a~~l~~~lGd~L 119 (228)
T cd08599 66 LTKPVKFEDCIKAIKENAFTASEYP--V--IITLENHLSPELQAKAAQILRETLGDKL 119 (228)
T ss_pred CcCCcCHHHHHHHHHHHhccCCCCC--E--EEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 3445667888899998876778888 4 4444457888776 66788999999864
No 410
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=20.59 E-value=3.2e+02 Score=28.47 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=44.2
Q ss_pred ccCCC-CCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 43 RLFDF-SAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 43 glfd~-~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
|+|.. ..+.-.+..+|.+-+..-.+++.+|.+| |.|- +..-+.+.++-|.+++++++||+...|+.
T Consensus 147 ~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alI---GER~----rEv~ef~~~~~~~~~l~rtvvV~atsd~p 213 (461)
T TIGR01039 147 GLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGV---GERT----REGNDLYHEMKESGVIDKTALVYGQMNEP 213 (461)
T ss_pred EeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEe---cCCc----hHHHHHHHHHHhcCCcceeEEEEECCCCC
Confidence 66643 4455667778877666545665554443 4222 34566677778899999999999988864
No 411
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.58 E-value=1e+03 Score=25.24 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=11.9
Q ss_pred HHHHHHHHhcHHHHHHHHHHHH
Q 036659 258 EAAQLAQMKSNDEIRKLRENLE 279 (300)
Q Consensus 258 ~~~~~~~~~~~~~i~~lre~le 279 (300)
+..+.+...++++|..|.|.|.
T Consensus 424 e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 424 EREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666554
No 412
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.57 E-value=1.3e+03 Score=26.90 Aligned_cols=47 Identities=32% Similarity=0.367 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 036659 234 NMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERA 281 (300)
Q Consensus 234 ~~l~~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~ 281 (300)
+..+++..++..+.+-++. |+.++.+-..+.+++..|...-.+|.+.
T Consensus 494 ~~~~el~~~~ee~~~~~~~-l~~~e~ii~~~~~se~~l~~~a~~l~~~ 540 (1041)
T KOG0243|consen 494 NKNKELESLKEELQQAKAT-LKEEEEIISQQEKSEEKLVDRATKLRRS 540 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555777777777665443 7777777777888887777655444443
No 413
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.52 E-value=5.6e+02 Score=22.15 Aligned_cols=46 Identities=33% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRE 284 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~ 284 (300)
++..++.++..-..+-.+.++....+ ..++..|.-|.++|+++...
T Consensus 50 eld~~~~~l~~~k~~lee~~~~~~~~-E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 50 ELDKLEEQLKEAKEKLEESEKRKSNA-EQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhH-HHHHhhHHHHHHHHHHHHHH
Confidence 44555555544433333333322222 25566666666666665433
No 414
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=20.44 E-value=1.3e+02 Score=22.75 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=28.0
Q ss_pred cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 64 MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 64 l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
+.++.+..--|+||. .||++|++.++.+-.-+|=.
T Consensus 10 lFkdd~~~~eL~Fp~--~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 10 LFKDDRMRDELAFPS--SLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EEecCCCceEEEcCC--CCCHHHHHHHHHHHHHcCCc
Confidence 345555677888875 69999999999999999854
No 415
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=20.36 E-value=9e+02 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=15.7
Q ss_pred HhcHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 036659 265 MKSNDEIRKLRENLERAQRETEELRKRAE 293 (300)
Q Consensus 265 ~~~~~~i~~lre~le~~~r~~~~~r~~~~ 293 (300)
.+.+++|..-.+.|-.|.+..++.|-.++
T Consensus 410 keleek~~eeedal~~all~~qeirl~~~ 438 (445)
T KOG2891|consen 410 KELEEKIKEEEDALLLALLNLQEIRLIAE 438 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555555556666665555554443
No 416
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=20.31 E-value=3.3e+02 Score=26.41 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=42.5
Q ss_pred ccCC-CCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 43 RLFD-FSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 43 glfd-~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
|+|. ...+.-.+...|.+-..++.-|--.+.++.-+|.|- +...+.+.++-+.++++|++||+...|+-
T Consensus 73 gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~----rev~e~~~~~~~~~~l~~tv~v~~t~~~~ 142 (276)
T cd01135 73 PIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITM----EDARFFKDDFEETGALERVVLFLNLANDP 142 (276)
T ss_pred EeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEecccc----HHHHHHHHHhhhcCCcceEEEEEecCCCC
Confidence 5664 344444555566665543322222233444455333 46677788888999999999999988765
No 417
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.23 E-value=8e+02 Score=28.59 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhHHHHhhhhhhhhHHHHHHHHHHHhH
Q 036659 169 DNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTE 248 (300)
Q Consensus 169 ~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v~~~~~~~~~~~l~~~~~lE~q~~~ 248 (300)
+|||--|.++ .++...+..=+..+...+..|.++ +..+++.+..++ ..+++++.++..|+.-+.+
T Consensus 379 qgr~sqFssk----~eRDkwir~ei~~l~~~i~~~ke~----------e~~lq~e~~~~e-~~l~~~~e~i~~l~~si~e 443 (1200)
T KOG0964|consen 379 QGRYSQFSSK----EERDKWIRSEIEKLKRGINDTKEQ----------ENILQKEIEDLE-SELKEKLEEIKELESSINE 443 (1200)
T ss_pred hccccccCcH----HHHHHHHHHHHHHHHHHHhhhhhH----------HHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhh
Q ss_pred HhhcchHHHHHHHHHHHhcHH-----------------HHHHHHHHHHHHHH
Q 036659 249 EQAAPLKVEEAAQLAQMKSND-----------------EIRKLRENLERAQR 283 (300)
Q Consensus 249 eq~a~le~e~~~~~~~~~~~~-----------------~i~~lre~le~~~r 283 (300)
-...-.+.-.+...+..++++ .|.++++.++++++
T Consensus 444 ~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 444 TKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!