Query 036659
Match_columns 300
No_of_seqs 228 out of 715
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 100.0 1.3E-30 4.5E-35 230.9 15.9 172 10-220 54-226 (247)
2 3lxx_A GTPase IMAP family memb 100.0 2.2E-28 7.6E-33 212.1 13.6 174 11-224 63-236 (239)
3 2xtp_A GTPase IMAP family memb 99.9 2.5E-20 8.4E-25 163.0 19.3 170 10-218 55-224 (260)
4 3def_A T7I23.11 protein; chlor 99.4 1.7E-12 5.8E-17 115.0 9.1 153 12-202 70-243 (262)
5 1h65_A Chloroplast outer envel 99.3 3E-11 1E-15 107.2 11.7 177 22-216 82-260 (270)
6 4dhe_A Probable GTP-binding pr 98.1 4.2E-05 1.4E-09 63.8 11.9 128 24-203 76-212 (223)
7 3iev_A GTP-binding protein ERA 98.0 2.5E-05 8.7E-10 71.1 10.0 135 23-211 54-190 (308)
8 3pqc_A Probable GTP-binding pr 97.9 0.00019 6.6E-09 57.7 12.2 125 26-202 67-194 (195)
9 1svi_A GTP-binding protein YSX 97.6 0.0012 4.2E-08 53.4 12.9 79 27-117 69-149 (195)
10 3t5d_A Septin-7; GTP-binding p 97.6 5.5E-05 1.9E-09 67.2 4.8 91 63-199 110-201 (274)
11 2lkc_A Translation initiation 97.4 0.012 4.3E-07 46.4 16.1 132 12-203 41-172 (178)
12 1wf3_A GTP-binding protein; GT 97.2 0.0026 8.9E-08 58.1 11.1 81 23-116 51-131 (301)
13 1jwy_B Dynamin A GTPase domain 97.1 0.0014 4.6E-08 58.2 8.1 90 25-127 129-222 (315)
14 2qu8_A Putative nucleolar GTP- 97.0 0.0024 8.3E-08 54.1 8.8 81 23-117 72-157 (228)
15 3t34_A Dynamin-related protein 97.0 0.0014 5E-08 60.3 7.4 80 26-117 135-218 (360)
16 2j69_A Bacterial dynamin-like 97.0 0.0034 1.2E-07 63.9 10.7 71 27-116 174-244 (695)
17 2dyk_A GTP-binding protein; GT 96.9 0.0041 1.4E-07 48.3 8.0 78 22-115 44-121 (161)
18 4dcu_A GTP-binding protein ENG 96.8 0.00039 1.3E-08 66.5 1.8 90 10-115 55-144 (456)
19 4dcu_A GTP-binding protein ENG 96.8 0.0037 1.3E-07 59.7 8.6 147 11-212 228-379 (456)
20 1mky_A Probable GTP-binding pr 96.6 0.0037 1.3E-07 59.4 7.4 90 10-114 33-122 (439)
21 3gee_A MNME, tRNA modification 96.6 0.056 1.9E-06 52.9 15.7 84 21-117 275-358 (476)
22 3geh_A MNME, tRNA modification 96.6 0.049 1.7E-06 53.1 15.2 87 12-117 258-345 (462)
23 2hjg_A GTP-binding protein ENG 96.5 0.004 1.4E-07 59.2 6.9 149 11-211 208-358 (436)
24 2aka_B Dynamin-1; fusion prote 96.3 0.0025 8.6E-08 55.8 3.9 85 26-127 124-216 (299)
25 3k53_A Ferrous iron transport 96.2 0.016 5.4E-07 51.0 8.4 77 22-114 45-121 (271)
26 3iby_A Ferrous iron transport 96.1 0.0023 8E-08 56.9 2.4 90 11-116 33-124 (256)
27 2x2e_A Dynamin-1; nitration, h 96.1 0.072 2.5E-06 49.0 12.4 90 26-127 129-221 (353)
28 4bas_A ADP-ribosylation factor 95.9 0.095 3.2E-06 42.1 11.1 76 22-117 58-142 (199)
29 1ksh_A ARF-like protein 2; sma 95.9 0.24 8.1E-06 39.6 13.3 75 22-116 57-133 (186)
30 3clv_A RAB5 protein, putative; 95.8 0.37 1.3E-05 38.0 13.9 67 27-116 93-160 (208)
31 4dsu_A GTPase KRAS, isoform 2B 95.4 0.36 1.2E-05 38.1 12.7 76 22-116 45-123 (189)
32 2x77_A ADP-ribosylation factor 95.4 0.77 2.6E-05 36.8 14.7 76 22-117 61-138 (189)
33 1ega_A Protein (GTP-binding pr 95.3 0.11 3.6E-06 47.2 10.1 79 23-116 52-130 (301)
34 3tw8_B RAS-related protein RAB 95.2 0.12 4E-06 40.5 9.0 73 22-115 51-126 (181)
35 3i8s_A Ferrous iron transport 95.1 0.015 5.1E-07 51.9 4.0 147 11-216 35-185 (274)
36 2j1l_A RHO-related GTP-binding 95.1 0.22 7.5E-06 41.5 11.0 134 22-205 75-212 (214)
37 3a1s_A Iron(II) transport prot 95.1 0.14 4.8E-06 45.3 10.3 131 11-202 37-167 (258)
38 1upt_A ARL1, ADP-ribosylation 95.1 0.6 2.1E-05 36.2 12.8 76 22-117 46-123 (171)
39 3qq5_A Small GTP-binding prote 94.9 0.032 1.1E-06 53.9 6.0 128 23-212 78-206 (423)
40 3bc1_A RAS-related protein RAB 94.9 0.14 4.9E-06 40.4 8.9 71 27-116 70-141 (195)
41 3con_A GTPase NRAS; structural 94.8 0.42 1.4E-05 38.2 11.4 76 22-116 62-140 (190)
42 1wb1_A Translation elongation 94.7 0.22 7.7E-06 48.3 11.3 82 11-116 58-139 (482)
43 1z08_A RAS-related protein RAB 94.7 0.36 1.2E-05 37.5 10.5 73 24-116 50-125 (170)
44 2hjg_A GTP-binding protein ENG 94.6 0.019 6.4E-07 54.5 3.4 91 10-116 35-125 (436)
45 2qag_A Septin-2, protein NEDD5 94.5 0.12 4.2E-06 48.1 8.8 48 64-117 141-189 (361)
46 2e87_A Hypothetical protein PH 94.5 0.17 5.8E-06 46.6 9.6 79 24-115 211-293 (357)
47 2gj8_A MNME, tRNA modification 94.5 0.079 2.7E-06 42.9 6.5 80 22-113 47-126 (172)
48 2g6b_A RAS-related protein RAB 94.5 0.24 8.3E-06 38.9 9.2 75 23-117 54-131 (180)
49 2ce2_X GTPase HRAS; signaling 94.4 0.56 1.9E-05 35.7 10.8 75 23-116 45-122 (166)
50 2wjg_A FEOB, ferrous iron tran 94.4 0.071 2.4E-06 42.6 5.8 123 22-204 49-171 (188)
51 3sjy_A Translation initiation 94.3 0.32 1.1E-05 45.6 11.1 70 25-116 73-143 (403)
52 1xzp_A Probable tRNA modificat 94.3 2 6.7E-05 42.1 17.0 73 21-115 285-363 (482)
53 2yc2_C IFT27, small RAB-relate 94.3 0.43 1.5E-05 38.4 10.4 72 27-116 73-146 (208)
54 3t5g_A GTP-binding protein RHE 94.2 1.4 4.7E-05 34.8 13.1 124 22-206 47-173 (181)
55 1zj6_A ADP-ribosylation factor 94.1 1.6 5.6E-05 34.9 13.5 76 21-116 54-131 (187)
56 1r8s_A ADP-ribosylation factor 94.1 0.77 2.6E-05 35.4 11.1 75 22-116 39-115 (164)
57 1z0j_A RAB-22, RAS-related pro 94.0 0.074 2.5E-06 41.3 5.1 70 27-116 55-125 (170)
58 2gf9_A RAS-related protein RAB 94.0 0.92 3.2E-05 36.4 11.9 70 26-116 70-141 (189)
59 2fh5_B SR-beta, signal recogni 93.9 0.32 1.1E-05 40.0 9.1 74 26-117 53-130 (214)
60 2bcg_Y Protein YP2, GTP-bindin 93.9 0.85 2.9E-05 37.1 11.6 75 22-116 50-127 (206)
61 4djt_A GTP-binding nuclear pro 93.9 0.21 7.2E-06 41.2 7.9 123 27-211 61-184 (218)
62 1moz_A ARL1, ADP-ribosylation 93.8 1.9 6.5E-05 33.9 13.4 75 22-116 57-133 (183)
63 3t1o_A Gliding protein MGLA; G 93.8 0.29 1E-05 38.8 8.4 71 26-114 73-147 (198)
64 3tkl_A RAS-related protein RAB 93.8 1.3 4.3E-05 35.4 12.2 76 22-117 58-136 (196)
65 2fu5_C RAS-related protein RAB 93.7 0.61 2.1E-05 36.9 10.2 72 23-115 51-126 (183)
66 2bme_A RAB4A, RAS-related prot 93.7 0.51 1.7E-05 37.4 9.6 74 22-115 52-128 (186)
67 3cph_A RAS-related protein SEC 93.6 1.3 4.6E-05 35.8 12.3 73 22-114 62-137 (213)
68 1z0f_A RAB14, member RAS oncog 93.6 0.54 1.9E-05 36.6 9.6 72 24-115 59-133 (179)
69 1g16_A RAS-related protein SEC 93.5 1.7 5.9E-05 33.4 12.2 72 23-114 46-120 (170)
70 1kao_A RAP2A; GTP-binding prot 93.5 0.27 9.3E-06 37.7 7.4 76 22-116 44-122 (167)
71 2ged_A SR-beta, signal recogni 93.5 0.2 6.9E-06 40.2 7.0 78 25-117 89-171 (193)
72 1mky_A Probable GTP-binding pr 93.4 0.22 7.7E-06 47.2 8.3 145 11-207 213-360 (439)
73 1ky3_A GTP-binding protein YPT 93.4 1.9 6.6E-05 33.5 12.5 72 26-115 57-131 (182)
74 2hup_A RAS-related protein RAB 93.3 0.68 2.3E-05 38.1 10.2 41 22-80 71-113 (201)
75 1x3s_A RAS-related protein RAB 93.3 0.42 1.4E-05 38.1 8.5 68 27-114 64-133 (195)
76 1z2a_A RAS-related protein RAB 93.3 0.4 1.4E-05 37.0 8.2 74 23-116 48-123 (168)
77 1u8z_A RAS-related protein RAL 93.2 0.34 1.2E-05 37.1 7.7 75 23-116 46-123 (168)
78 3zvr_A Dynamin-1; hydrolase, D 93.2 0.16 5.4E-06 53.2 7.5 88 26-126 149-240 (772)
79 1zbd_A Rabphilin-3A; G protein 93.2 0.73 2.5E-05 37.3 10.0 69 27-116 57-127 (203)
80 2a9k_A RAS-related protein RAL 93.2 0.92 3.1E-05 35.6 10.3 76 22-116 59-137 (187)
81 2f7s_A C25KG, RAS-related prot 93.2 0.86 2.9E-05 37.4 10.6 69 26-115 83-154 (217)
82 1zun_B Sulfate adenylate trans 93.1 0.69 2.4E-05 43.8 11.1 71 24-116 101-171 (434)
83 2h57_A ADP-ribosylation factor 93.0 0.5 1.7E-05 38.0 8.7 75 22-116 62-140 (190)
84 2gf0_A GTP-binding protein DI- 92.9 0.19 6.4E-06 40.4 6.0 72 27-116 56-128 (199)
85 1lnz_A SPO0B-associated GTP-bi 92.9 0.034 1.2E-06 52.1 1.7 83 23-116 201-288 (342)
86 3kkq_A RAS-related protein M-R 92.8 2.2 7.4E-05 33.7 12.1 48 68-116 89-137 (183)
87 3tr5_A RF-3, peptide chain rel 92.7 0.56 1.9E-05 46.4 10.3 71 22-115 77-147 (528)
88 3oes_A GTPase rhebl1; small GT 92.7 1.1 3.7E-05 36.6 10.4 119 25-205 70-190 (201)
89 2bov_A RAla, RAS-related prote 92.7 1.6 5.4E-05 35.1 11.3 76 22-116 55-133 (206)
90 2erx_A GTP-binding protein DI- 92.6 0.18 6.1E-06 39.1 5.3 72 27-116 51-123 (172)
91 3dz8_A RAS-related protein RAB 92.6 0.67 2.3E-05 37.4 8.9 70 25-115 70-141 (191)
92 1r2q_A RAS-related protein RAB 92.6 0.099 3.4E-06 40.4 3.8 38 26-81 54-91 (170)
93 2qtf_A Protein HFLX, GTP-bindi 92.4 1.3 4.5E-05 41.5 11.9 86 21-117 220-307 (364)
94 1mh1_A RAC1; GTP-binding, GTPa 92.3 0.41 1.4E-05 37.7 7.1 75 22-117 46-124 (186)
95 2efe_B Small GTP-binding prote 92.1 0.75 2.6E-05 36.1 8.5 70 27-116 61-131 (181)
96 3reg_A RHO-like small GTPase; 92.0 1.2 4.1E-05 35.8 9.7 75 22-116 64-141 (194)
97 2oil_A CATX-8, RAS-related pro 91.7 1.2 4E-05 35.8 9.4 71 26-116 73-144 (193)
98 1kk1_A EIF2gamma; initiation o 91.7 1.6 5.6E-05 40.7 11.6 68 27-116 83-151 (410)
99 1wms_A RAB-9, RAB9, RAS-relate 91.6 3.8 0.00013 31.8 12.0 75 23-115 50-129 (177)
100 2q3h_A RAS homolog gene family 91.5 2.6 9E-05 33.9 11.3 75 22-117 61-139 (201)
101 2wji_A Ferrous iron transport 91.5 0.62 2.1E-05 36.9 7.4 48 22-79 45-92 (165)
102 2xex_A Elongation factor G; GT 91.3 0.91 3.1E-05 46.2 10.2 72 22-116 70-141 (693)
103 2fg5_A RAB-22B, RAS-related pr 91.3 0.39 1.3E-05 38.9 6.1 71 25-115 70-141 (192)
104 2fn4_A P23, RAS-related protei 91.2 3 0.0001 32.4 11.0 75 22-116 50-128 (181)
105 2y8e_A RAB-protein 6, GH09086P 91.2 0.25 8.7E-06 38.5 4.7 74 23-116 57-133 (179)
106 2h17_A ADP-ribosylation factor 91.2 0.68 2.3E-05 37.0 7.4 76 21-116 59-136 (181)
107 1zd9_A ADP-ribosylation factor 91.1 1.7 5.6E-05 35.1 9.7 75 22-116 62-138 (188)
108 2atx_A Small GTP binding prote 91.1 1.4 4.8E-05 35.4 9.2 74 23-117 60-137 (194)
109 2gco_A H9, RHO-related GTP-bin 91.0 1.2 3.9E-05 36.5 8.7 75 22-117 66-144 (201)
110 1z06_A RAS-related protein RAB 90.9 0.74 2.5E-05 37.0 7.4 77 22-116 62-141 (189)
111 2a5j_A RAS-related protein RAB 90.8 2.5 8.5E-05 34.0 10.5 41 22-80 63-105 (191)
112 3vqt_A RF-3, peptide chain rel 90.8 0.38 1.3E-05 47.7 6.7 65 22-101 95-184 (548)
113 3gj0_A GTP-binding nuclear pro 90.4 2.1 7.1E-05 35.4 9.9 114 26-204 63-177 (221)
114 3llu_A RAS-related GTP-binding 90.4 2 6.9E-05 34.9 9.7 75 27-116 69-143 (196)
115 2o52_A RAS-related protein RAB 90.3 2.9 0.0001 34.1 10.6 73 23-115 68-143 (200)
116 2b6h_A ADP-ribosylation factor 90.2 6.4 0.00022 31.9 12.8 74 22-115 68-143 (192)
117 2il1_A RAB12; G-protein, GDP, 90.2 4.4 0.00015 32.7 11.5 73 22-115 68-144 (192)
118 2hxs_A RAB-26, RAS-related pro 90.1 3.7 0.00013 31.9 10.7 75 23-115 49-128 (178)
119 3o47_A ADP-ribosylation factor 89.8 0.78 2.7E-05 41.9 7.4 75 22-116 204-280 (329)
120 1ek0_A Protein (GTP-binding pr 89.7 3.2 0.00011 31.7 9.9 75 23-117 46-123 (170)
121 3szr_A Interferon-induced GTP- 89.5 0.56 1.9E-05 46.9 6.7 80 27-117 147-229 (608)
122 3cpj_B GTP-binding protein YPT 89.2 3 0.0001 34.6 10.0 74 22-115 55-131 (223)
123 3lvq_E ARF-GAP with SH3 domain 89.1 1.5 5.1E-05 41.7 9.1 132 22-212 361-494 (497)
124 2cxx_A Probable GTP-binding pr 89.1 2.8 9.5E-05 33.0 9.3 45 28-79 45-93 (190)
125 1f5n_A Interferon-induced guan 89.0 1.5 5E-05 44.5 9.3 59 25-96 89-148 (592)
126 1c1y_A RAS-related protein RAP 89.0 2.9 0.0001 32.0 9.2 72 26-116 50-122 (167)
127 2p5s_A RAS and EF-hand domain 88.5 0.93 3.2E-05 36.9 6.2 72 23-114 71-145 (199)
128 2fv8_A H6, RHO-related GTP-bin 88.4 8.7 0.0003 31.3 12.2 74 23-117 67-144 (207)
129 2qpt_A EH domain-containing pr 88.3 0.21 7E-06 49.6 2.5 83 27-127 154-241 (550)
130 2nzj_A GTP-binding protein REM 88.2 7.5 0.00026 30.0 11.4 78 22-116 45-125 (175)
131 1dar_A EF-G, elongation factor 88.2 1.7 5.9E-05 44.2 9.3 82 11-116 62-143 (691)
132 2c78_A Elongation factor TU-A; 88.1 0.85 2.9E-05 42.6 6.5 71 24-116 72-142 (405)
133 3q72_A GTP-binding protein RAD 88.0 4.2 0.00014 31.2 9.5 50 66-117 70-121 (166)
134 1nrj_B SR-beta, signal recogni 88.0 0.69 2.4E-05 38.0 5.2 75 25-117 53-135 (218)
135 2h5e_A Peptide chain release f 87.5 2.4 8.3E-05 41.8 9.6 72 22-116 77-148 (529)
136 1vg8_A RAS-related protein RAB 87.4 2.8 9.5E-05 33.7 8.5 71 27-115 57-130 (207)
137 1s0u_A EIF-2-gamma, translatio 87.4 3.6 0.00012 38.5 10.3 69 27-117 81-150 (408)
138 1d2e_A Elongation factor TU (E 87.1 1.4 4.8E-05 41.2 7.4 71 24-116 63-133 (397)
139 2atv_A RERG, RAS-like estrogen 87.0 4.9 0.00017 32.4 9.7 74 23-116 70-146 (196)
140 3l0i_B RAS-related protein RAB 86.7 0.99 3.4E-05 36.7 5.4 73 23-115 76-151 (199)
141 3p26_A Elongation factor 1 alp 86.2 3.2 0.00011 39.9 9.5 72 23-116 107-185 (483)
142 1pui_A ENGB, probable GTP-bind 86.2 12 0.00041 30.2 12.0 77 28-117 73-152 (210)
143 1m7b_A RND3/RHOE small GTP-bin 86.2 5.8 0.0002 31.6 9.6 70 27-116 55-125 (184)
144 3izy_P Translation initiation 86.0 0.79 2.7E-05 45.8 5.3 82 10-115 35-117 (537)
145 2j37_W Signal recognition part 85.8 1.6 5.5E-05 43.2 7.3 74 25-117 182-255 (504)
146 2ew1_A RAS-related protein RAB 85.5 7.9 0.00027 32.0 10.4 42 22-81 68-111 (201)
147 3ihw_A Centg3; RAS, centaurin, 84.5 4 0.00014 33.0 8.0 38 21-81 59-98 (184)
148 3izq_1 HBS1P, elongation facto 84.2 2.6 9E-05 42.3 8.1 83 11-116 230-319 (611)
149 3cb4_D GTP-binding protein LEP 83.6 11 0.00036 38.1 12.2 66 27-115 71-136 (599)
150 3j2k_7 ERF3, eukaryotic polype 83.4 2.6 8.9E-05 40.2 7.4 71 23-115 91-168 (439)
151 4gzl_A RAS-related C3 botulinu 82.9 1 3.5E-05 37.1 3.8 74 23-117 72-149 (204)
152 1m2o_B GTP-binding protein SAR 82.2 13 0.00045 30.0 10.3 76 21-116 61-138 (190)
153 2ywe_A GTP-binding protein LEP 82.1 16 0.00054 37.0 12.8 48 27-92 73-120 (600)
154 1vma_A Cell division protein F 81.4 2.4 8.2E-05 39.0 6.1 75 25-116 185-263 (306)
155 1gwn_A RHO-related GTP-binding 81.3 13 0.00044 30.7 10.1 70 27-116 76-146 (205)
156 1jny_A EF-1-alpha, elongation 80.9 3.7 0.00013 38.9 7.4 73 22-116 79-158 (435)
157 4fn5_A EF-G 1, elongation fact 80.8 1.6 5.4E-05 44.3 5.1 51 25-93 83-133 (709)
158 3c5c_A RAS-like protein 12; GD 80.8 20 0.00069 28.7 11.8 39 23-80 63-103 (187)
159 3b1v_A Ferrous iron uptake tra 80.3 4.7 0.00016 36.0 7.5 44 26-79 48-91 (272)
160 3j25_A Tetracycline resistance 79.4 2.3 7.9E-05 42.7 5.7 29 22-64 62-90 (638)
161 3q85_A GTP-binding protein REM 79.4 19 0.00064 27.5 11.7 46 68-115 75-122 (169)
162 3bwd_D RAC-like GTP-binding pr 79.0 2.4 8.1E-05 33.2 4.6 73 23-116 50-126 (182)
163 3th5_A RAS-related C3 botulinu 80.2 0.4 1.4E-05 39.1 0.0 48 66-116 99-148 (204)
164 2wkq_A NPH1-1, RAS-related C3 78.7 3.6 0.00012 35.7 6.1 74 22-116 196-273 (332)
165 1zcb_A G alpha I/13; GTP-bindi 78.5 10 0.00035 35.6 9.5 74 23-115 197-280 (362)
166 1f60_A Elongation factor EEF1A 78.2 2.7 9.3E-05 40.3 5.5 71 23-115 81-158 (458)
167 2iwr_A Centaurin gamma 1; ANK 77.9 10 0.00036 29.5 8.1 70 22-114 47-120 (178)
168 2v3c_C SRP54, signal recogniti 77.7 4.7 0.00016 38.8 7.1 73 25-116 179-252 (432)
169 2j0v_A RAC-like GTP-binding pr 77.6 6.7 0.00023 31.8 7.1 73 23-116 51-127 (212)
170 1zo1_I IF2, translation initia 77.6 2.5 8.6E-05 41.8 5.2 82 10-115 35-116 (501)
171 3dpu_A RAB family protein; roc 77.4 17 0.00058 35.1 11.0 69 26-117 97-165 (535)
172 3vp9_A General transcriptional 77.2 6.2 0.00021 31.4 6.4 22 260-281 66-87 (92)
173 1f6b_A SAR1; gtpases, N-termin 76.9 9 0.00031 31.3 7.7 75 21-115 63-139 (198)
174 3h2y_A GTPase family protein; 76.9 1.5 5.3E-05 40.9 3.4 75 29-117 213-288 (368)
175 2rdo_7 EF-G, elongation factor 76.5 12 0.00041 38.2 10.0 67 27-116 82-148 (704)
176 1zu4_A FTSY; GTPase, signal re 76.3 3.3 0.00011 38.2 5.4 74 25-115 190-267 (320)
177 3dm5_A SRP54, signal recogniti 76.2 4.8 0.00016 39.4 6.7 73 25-116 181-253 (443)
178 3r7w_A Gtpase1, GTP-binding pr 75.7 6.1 0.00021 35.4 6.9 79 25-116 50-129 (307)
179 1r5b_A Eukaryotic peptide chai 75.1 5 0.00017 38.5 6.5 82 11-115 106-194 (467)
180 2elf_A Protein translation elo 74.5 10 0.00035 35.4 8.3 70 23-115 56-125 (370)
181 1yrb_A ATP(GTP)binding protein 73.3 6.7 0.00023 33.2 6.2 76 27-116 109-185 (262)
182 1fzq_A ADP-ribosylation factor 72.4 19 0.00066 28.6 8.5 75 22-116 55-131 (181)
183 3q3j_B RHO-related GTP-binding 71.7 21 0.00072 29.4 8.8 70 27-116 75-145 (214)
184 2ffh_A Protein (FFH); SRP54, s 71.0 6.6 0.00023 38.0 6.3 71 25-114 179-249 (425)
185 4ido_A Atlastin-1; GTPase, GTP 70.8 84 0.0029 30.9 19.7 56 27-95 140-195 (457)
186 1rj9_A FTSY, signal recognitio 70.8 9.2 0.00031 34.9 6.9 76 26-116 184-261 (304)
187 3q5d_A Atlastin-1; G protein, 69.4 17 0.00058 35.5 8.8 88 27-128 140-238 (447)
188 3avx_A Elongation factor TS, e 69.4 18 0.00062 40.2 9.8 71 24-116 356-426 (1289)
189 3ec1_A YQEH GTPase; atnos1, at 68.9 6.3 0.00022 36.7 5.4 78 13-117 36-113 (369)
190 1g7s_A Translation initiation 68.8 15 0.00051 36.9 8.5 65 28-115 71-135 (594)
191 1n0u_A EF-2, elongation factor 67.6 18 0.0006 37.7 9.0 48 26-91 97-144 (842)
192 1cip_A Protein (guanine nucleo 66.9 29 0.00099 32.4 9.5 74 23-115 189-272 (353)
193 2yhs_A FTSY, cell division pro 66.8 9.9 0.00034 38.0 6.6 74 25-115 374-451 (503)
194 1wxq_A GTP-binding protein; st 65.2 26 0.00089 33.1 8.9 43 27-80 71-113 (397)
195 4a9a_A Ribosome-interacting GT 64.9 11 0.00038 35.8 6.3 89 12-114 105-194 (376)
196 1ls1_A Signal recognition part 64.6 17 0.00057 32.8 7.2 72 25-115 179-250 (295)
197 1j8m_F SRP54, signal recogniti 64.4 12 0.0004 34.0 6.2 74 25-115 179-252 (297)
198 2dy1_A Elongation factor G; tr 63.6 22 0.00074 35.9 8.5 70 22-115 69-138 (665)
199 2xxa_A Signal recognition part 62.3 16 0.00056 35.1 7.1 72 25-115 182-253 (433)
200 1f5n_A Interferon-induced guan 62.1 1.1E+02 0.0037 30.9 13.2 23 57-79 221-243 (592)
201 3kl4_A SRP54, signal recogniti 61.4 12 0.00042 36.2 6.0 74 25-115 178-251 (433)
202 3h2y_A GTPase family protein; 59.8 7.8 0.00027 36.2 4.2 78 13-117 34-111 (368)
203 3p32_A Probable GTPase RV1496/ 59.3 69 0.0024 29.2 10.4 35 24-79 169-203 (355)
204 3ohm_A Guanine nucleotide-bind 56.8 1.2E+02 0.0042 28.0 11.8 74 23-115 163-246 (327)
205 3ec1_A YQEH GTPase; atnos1, at 56.3 4.3 0.00015 37.9 1.8 76 28-117 213-289 (369)
206 3oja_B Anopheles plasmodium-re 54.6 1.5E+02 0.0052 28.3 13.3 13 270-282 545-557 (597)
207 2px0_A Flagellar biosynthesis 53.7 47 0.0016 29.9 8.2 83 25-127 181-263 (296)
208 1x79_B RAB GTPase binding effe 52.9 64 0.0022 26.4 8.0 51 240-290 16-66 (112)
209 2qag_C Septin-7; cell cycle, c 52.5 22 0.00074 34.2 6.0 46 66-117 136-182 (418)
210 4dzz_A Plasmid partitioning pr 52.0 45 0.0015 26.7 7.1 55 70-128 99-156 (206)
211 3k66_A Beta-amyloid-like prote 51.8 1.1E+02 0.0039 27.9 10.3 70 211-284 16-86 (239)
212 1ic2_A Tropomyosin alpha chain 51.5 73 0.0025 23.8 8.7 56 238-293 21-79 (81)
213 2bnx_A Diaphanous protein homo 50.9 1.9 6.6E-05 41.0 -1.6 42 238-279 341-382 (386)
214 1deq_A Fibrinogen (alpha chain 50.4 37 0.0013 33.2 7.2 52 166-217 46-98 (390)
215 3mq7_A Bone marrow stromal ant 49.6 99 0.0034 25.7 8.7 29 265-293 74-102 (121)
216 3mca_A HBS1, elongation factor 48.7 2 6.7E-05 43.0 -2.0 83 11-116 240-329 (592)
217 2zej_A Dardarin, leucine-rich 44.3 59 0.002 25.7 6.6 14 68-81 79-92 (184)
218 2dby_A GTP-binding protein; GD 41.3 22 0.00075 33.5 4.1 44 25-79 67-110 (368)
219 2l82_A Designed protein OR32; 41.0 1.3E+02 0.0046 25.1 8.3 25 51-77 11-35 (162)
220 3oja_A Leucine-rich immune mol 40.9 2E+02 0.0067 27.1 10.6 31 260-290 433-463 (487)
221 3e70_C DPA, signal recognition 40.7 61 0.0021 29.9 6.9 71 26-115 211-281 (328)
222 3cbq_A GTP-binding protein REM 40.4 1.4E+02 0.0049 23.9 14.6 35 165-205 157-191 (195)
223 2ebm_A RWD domain-containing p 39.8 73 0.0025 24.8 6.3 43 186-228 84-126 (128)
224 1puj_A YLQF, conserved hypothe 39.0 18 0.00061 32.4 2.9 39 11-60 153-191 (282)
225 3nmd_A CGMP dependent protein 38.8 98 0.0034 23.5 6.6 16 213-228 21-36 (72)
226 2dfs_A Myosin-5A; myosin-V, in 38.2 1.3E+02 0.0045 32.5 9.9 42 238-279 992-1033(1080)
227 3sop_A Neuronal-specific septi 37.7 46 0.0016 29.5 5.4 43 69-117 112-155 (270)
228 3mq9_A Bone marrow stromal ant 36.5 2.6E+02 0.0088 26.1 10.6 24 266-289 447-470 (471)
229 3ibs_A Conserved hypothetical 36.2 85 0.0029 25.5 6.5 47 26-77 12-59 (218)
230 3vem_A Helicase protein MOM1; 35.7 1.8E+02 0.0063 23.9 9.3 70 205-289 30-99 (115)
231 3na7_A HP0958; flagellar bioge 32.9 2.5E+02 0.0087 24.6 12.2 72 209-281 88-162 (256)
232 3la6_A Tyrosine-protein kinase 31.5 98 0.0034 27.6 6.6 41 68-113 224-265 (286)
233 2qag_B Septin-6, protein NEDD5 31.5 43 0.0015 32.5 4.5 43 69-117 148-191 (427)
234 4dkx_A RAS-related protein RAB 31.4 72 0.0024 27.1 5.4 49 66-117 83-132 (216)
235 3rrk_A V-type ATPase 116 kDa s 31.2 1.6E+02 0.0055 26.6 8.1 40 260-299 249-288 (357)
236 2qag_B Septin-6, protein NEDD5 30.7 39 0.0013 32.8 4.0 40 55-98 166-206 (427)
237 3onj_A T-snare VTI1; helix, HA 30.1 1.9E+02 0.0064 22.2 9.2 22 263-284 66-88 (97)
238 2dfs_A Myosin-5A; myosin-V, in 29.6 1.3E+02 0.0044 32.6 8.1 50 238-288 961-1010(1080)
239 1udx_A The GTP-binding protein 29.4 3.5E+02 0.012 25.7 10.4 75 24-115 201-282 (416)
240 2p67_A LAO/AO transport system 29.3 10 0.00035 34.7 -0.4 35 24-79 146-180 (341)
241 1zxa_A CGMP-dependent protein 29.0 58 0.002 24.4 3.8 25 269-293 25-49 (67)
242 1vcs_A Vesicle transport throu 28.8 2E+02 0.007 22.2 7.5 24 264-287 69-92 (102)
243 1jal_A YCHF protein; nucleotid 28.4 20 0.00068 34.0 1.5 42 27-79 66-107 (363)
244 3kjh_A CO dehydrogenase/acetyl 27.7 80 0.0028 25.7 4.9 65 25-113 130-194 (254)
245 3cio_A ETK, tyrosine-protein k 27.6 73 0.0025 28.4 5.0 40 69-113 237-277 (299)
246 1azs_C GS-alpha; complex (lyas 27.2 70 0.0024 30.6 5.1 74 23-115 213-296 (402)
247 3sjm_A Telomeric repeat-bindin 27.1 50 0.0017 23.7 3.2 24 80-103 12-35 (64)
248 2i1j_A Moesin; FERM, coiled-co 26.6 73 0.0025 31.9 5.3 29 260-288 354-382 (575)
249 3zzp_A TS9, ribosomal protein 26.3 73 0.0025 23.9 4.0 29 172-205 49-77 (77)
250 1w0t_A Telomeric repeat bindin 26.3 54 0.0019 22.1 3.1 23 80-102 3-25 (53)
251 4etp_B Spindle POLE BODY-assoc 25.7 1.2E+02 0.0041 29.1 6.2 43 241-283 7-49 (333)
252 1gyx_A YDCE, B1461, hypothetic 25.2 1.8E+02 0.006 20.6 5.9 39 69-110 1-44 (76)
253 3bfv_A CAPA1, CAPB2, membrane 24.7 2.7E+02 0.0093 24.3 8.2 39 70-113 216-255 (271)
254 2i1j_A Moesin; FERM, coiled-co 24.5 95 0.0032 31.1 5.6 7 93-99 130-136 (575)
255 4fid_A G protein alpha subunit 24.0 1.6E+02 0.0056 27.4 6.9 73 24-115 158-240 (340)
256 3k9g_A PF-32 protein; ssgcid, 23.9 2E+02 0.0069 24.2 7.0 56 69-128 167-222 (267)
257 1g3q_A MIND ATPase, cell divis 23.6 3E+02 0.01 22.4 8.6 41 70-114 135-175 (237)
258 3vr4_D V-type sodium ATPase su 23.5 1.7E+02 0.006 28.9 7.2 69 43-115 155-224 (465)
259 1ni3_A YCHF GTPase, YCHF GTP-b 23.3 88 0.003 29.7 4.9 42 27-79 85-126 (392)
260 2f9l_A RAB11B, member RAS onco 23.2 2.8E+02 0.0096 21.9 10.6 44 22-83 47-92 (199)
261 4dzo_A Mitotic spindle assembl 22.6 1.3E+02 0.0045 24.4 5.2 32 238-276 5-36 (123)
262 1gvd_A MYB proto-oncogene prot 22.2 71 0.0024 21.3 3.0 21 80-100 4-24 (52)
263 1guu_A C-MYB, MYB proto-oncoge 22.0 69 0.0024 21.4 2.9 23 80-102 4-26 (52)
264 1wcv_1 SOJ, segregation protei 21.9 1.4E+02 0.0048 25.2 5.5 68 25-114 110-181 (257)
265 3iyk_A VP5; icosahedral virus; 21.7 3.4E+02 0.012 27.5 8.8 53 230-285 160-212 (526)
266 2c61_A A-type ATP synthase non 21.4 1.7E+02 0.0059 28.8 6.7 69 43-115 156-225 (469)
267 3cwq_A Para family chromosome 21.2 2.7E+02 0.0094 22.9 7.1 54 70-128 92-147 (209)
268 2jee_A YIIU; FTSZ, septum, coi 21.1 2.9E+02 0.0099 21.3 9.7 21 208-228 3-23 (81)
269 2eqb_B RAB guanine nucleotide 20.8 3.2E+02 0.011 21.7 10.0 32 238-269 27-58 (97)
270 2ohf_A Protein OLA1, GTP-bindi 20.7 52 0.0018 31.6 2.7 42 27-79 86-127 (396)
271 2d9a_A B-MYB, MYB-related prot 20.1 78 0.0027 21.8 2.9 23 80-102 9-31 (60)
272 3r7w_B Gtpase2, GTP-binding pr 20.0 2.3E+02 0.0078 26.5 7.0 50 67-117 71-120 (331)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.97 E-value=1.3e-30 Score=230.93 Aligned_cols=172 Identities=23% Similarity=0.466 Sum_probs=153.6
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCCh-HHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGS-KFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA 88 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~-e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~ 88 (300)
.++|..|... ...++|+.++||||| |++++.... +...++|.+|+.++.+|+|+||+|++++ +|+.++..
T Consensus 54 ~~~T~~~~~~-~~~~~~~~i~liDTP-------G~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~-~~~~~~~~ 124 (247)
T 3lxw_A 54 TSVTRACTTG-SRRWDKCHVEVVDTP-------DIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLG-RFTAQDQQ 124 (247)
T ss_dssp ---CCSCEEE-EEEETTEEEEEEECC-------SCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETT-BCCHHHHH
T ss_pred CCccccEEEE-EEEECCcEEEEEECC-------CCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCC-CCCHHHHH
Confidence 4688899877 467899999999999 999887665 6778899999999999999999999998 89999999
Q ss_pred HHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhc
Q 036659 89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLC 168 (300)
Q Consensus 89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C 168 (300)
+++.++.+||.+++++.|||||++++|.+ .++++|+....+..|++ +++.|
T Consensus 125 ~~~~l~~~~~~~~~~~~iilv~nK~Dl~~--~~~~~~l~~~~~~~l~~---------------------------l~~~~ 175 (247)
T 3lxw_A 125 AVRQVRDMFGEDVLKWMVIVFTRKEDLAG--GSLHDYVSNTENRALRE---------------------------LVAEC 175 (247)
T ss_dssp HHHHHHHHHCGGGGGGEEEEEECGGGGTT--CCHHHHHHHCCCHHHHH---------------------------HHHHT
T ss_pred HHHHHHHHhChhhhccEEEEEEchHhcCC--CCHHHHHhhcccHHHHH---------------------------HHHHc
Confidence 99999999999999999999999999977 58999998755678999 99999
Q ss_pred CCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 036659 169 DNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLF 220 (300)
Q Consensus 169 ~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~ 220 (300)
|+|||+|||++.+ +.+..||.+||++|+.|+.+|||+||+++||.+++...
T Consensus 176 g~~~~~~~~~~~~-~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~ 226 (247)
T 3lxw_A 176 GGRVCAFDNRATG-REQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLR 226 (247)
T ss_dssp TTCEEECCTTCCH-HHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHGG
T ss_pred CCeEEEEeCCCCc-cccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 9999999999764 35679999999999999999999999999999998544
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=2.2e-28 Score=212.11 Aligned_cols=174 Identities=26% Similarity=0.438 Sum_probs=128.9
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
++|..|... ...++|+.+.||||| |++|+..+.+.+.+++.+|+..+.||+|++|+|+++. +++.++...+
T Consensus 63 ~~t~~~~~~-~~~~~~~~i~liDTp-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l 133 (239)
T 3lxx_A 63 SITKKCEKR-SSSWKETELVVVDTP-------GIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG-RYTEEEHKAT 133 (239)
T ss_dssp --CCSCEEE-EEEETTEEEEEEECC-------SCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETT-CCSSHHHHHH
T ss_pred ceeeeEEEE-EEEeCCceEEEEECC-------CccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCC-CCCHHHHHHH
Confidence 678888776 467899999999999 9999988888899999999999999999999999997 9999999999
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDN 170 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~ 170 (300)
..+...||.....++|||+|..|.+.+ .++++|+.. .+..|++ +++.|++
T Consensus 134 ~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~---------------------------l~~~~~~ 183 (239)
T 3lxx_A 134 EKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQD---------------------------LMDIFGD 183 (239)
T ss_dssp HHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHH---------------------------HHHHHSS
T ss_pred HHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHH---------------------------HHHHcCC
Confidence 999999999999999999999998876 589999987 4667999 9999999
Q ss_pred eEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhH
Q 036659 171 RCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFV 224 (300)
Q Consensus 171 R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v 224 (300)
||++|+|++++ +++..||.+||.+|+.|+.+|+|.||+++||.++++.+++..
T Consensus 184 ~~~~~~~~~~~-~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~~~ 236 (239)
T 3lxx_A 184 RYCALNNKATG-AEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQT 236 (239)
T ss_dssp SEEECCTTCCH-HHHHHHHHHHHHHHHHHHHHCTTSCC----------------
T ss_pred EEEEEECCCCc-cccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999765 356789999999999999999999999999999998776653
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=2.5e-20 Score=163.04 Aligned_cols=170 Identities=21% Similarity=0.416 Sum_probs=145.6
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.++|..|... +..++|..+++|||| |++++....+...++|.+|+..+.+++|++|+|+.+. +|+..+...
T Consensus 55 ~~~t~~~~~~-~~~~~~~~i~iiDTp-------G~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~ 125 (260)
T 2xtp_A 55 QTLTKTCSKS-QGSWGNREIVIIDTP-------DMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLG-RYTSQDQQA 125 (260)
T ss_dssp CCCCCSCEEE-EEEETTEEEEEEECC-------GGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETT-CCCHHHHHH
T ss_pred CceeeeeEEE-EEEeCCCEEEEEECc-------CCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCC-CCCHHHHHH
Confidence 3477777765 467899999999999 9998887778888899999998899999999999998 799999999
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD 169 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~ 169 (300)
+..+..+||..+...+|||||++.++.+ ..+.+|+....+..++. +++.|+
T Consensus 126 ~~~l~~~~~~~~~~~~i~vv~nK~Dl~~--~~~~~~i~~~~~~~~~~---------------------------~~~~~~ 176 (260)
T 2xtp_A 126 AQRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSK---------------------------LVAACG 176 (260)
T ss_dssp HHHHHHHHCGGGGGGEEEEEECGGGGTT--CCHHHHHHHCCCHHHHH---------------------------HHHHTT
T ss_pred HHHHHHHhCchhhccEEEEEEcccccCC--ccHHHHHHhcchHHHHH---------------------------HHHHhC
Confidence 9999999999988999999998877765 47999998755566888 899999
Q ss_pred CeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 036659 170 NRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKL 218 (300)
Q Consensus 170 ~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~ 218 (300)
.|++.|++- .-.++...+|.+|+..|..++..++|.+|+++++.+..+
T Consensus 177 ~~~~~~~~~-~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T 2xtp_A 177 GRICAFNNR-AEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224 (260)
T ss_dssp TCEEECCTT-CCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred CeEEEecCc-ccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 999989883 233556789999999999999999989999998877765
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.35 E-value=1.7e-12 Score=115.02 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=114.3
Q ss_pred CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC-CCCHHHHHHH
Q 036659 12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS-RFSQEEEAAL 90 (300)
Q Consensus 12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~-rfT~EE~~al 90 (300)
.|..+... ...++|+.+++|||| |+.++....+...+.|.+|+ +.+++|+||+|++++. +|+..+...+
T Consensus 70 ~t~~~~~~-~~~~~~~~l~liDTp-------G~~~~~~~~~~~~~~i~~~l--~~~~~~~il~V~~~d~~~~~~~~~~~~ 139 (262)
T 3def_A 70 EGLRPVMV-SRTMGGFTINIIDTP-------GLVEAGYVNHQALELIKGFL--VNRTIDVLLYVDRLDVYAVDELDKQVV 139 (262)
T ss_dssp -CCCCEEE-EEEETTEEEEEEECC-------CSEETTEECHHHHHHHHHHT--TTCEECEEEEEEESSCSCCCHHHHHHH
T ss_pred cceeeEEE-EEEECCeeEEEEECC-------CCCCcccchHHHHHHHHHHH--hcCCCCEEEEEEcCCCCCCCHHHHHHH
Confidence 34444433 346889999999999 88877766677778888887 5789999999998864 7999999999
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC-
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD- 169 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~- 169 (300)
+.++..||.++++++|||+|..|.....+.++++|+.. ....|++ ++..|.
T Consensus 140 ~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~---------------------------~i~~~~~ 191 (262)
T 3def_A 140 IAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLK---------------------------TIRAGSK 191 (262)
T ss_dssp HHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHH---------------------------HHHHHHT
T ss_pred HHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHH---------------------------HHHHHhC
Confidence 99999999999999999999998654445799999976 3456777 665554
Q ss_pred ----------CeEEEEeCCCcchh---------hchHHHHHHHHHHHHHHHH
Q 036659 170 ----------NRCVLFDNKTKDEA---------KRTEQIWKLLSLVNSVAVQ 202 (300)
Q Consensus 170 ----------~R~~~FnNk~~de~---------~~~~Qv~eLL~~Ve~mv~~ 202 (300)
..+.+++|...-.. .....+..||+.|..|+..
T Consensus 192 ~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~~~~~ 243 (262)
T 3def_A 192 MRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATN 243 (262)
T ss_dssp CCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHHHHTS
T ss_pred ccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHHHHhC
Confidence 55666677533111 0122567788888888864
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.26 E-value=3e-11 Score=107.16 Aligned_cols=177 Identities=16% Similarity=0.183 Sum_probs=111.9
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHHhchh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~-rfT~EE~~al~~lq~lFG~~ 100 (300)
...+|..++||||| |+.++....+...+.|.+++ ..+++|++|+|++++. +|+..+...+..+...||.+
T Consensus 82 ~~~~~~~l~iiDTp-------G~~~~~~~~~~~~~~i~~~~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~ 152 (270)
T 1h65_A 82 RSRAGFTLNIIDTP-------GLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG 152 (270)
T ss_dssp EEETTEEEEEEECC-------CSEETTEECHHHHHHHHHHT--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG
T ss_pred EeeCCeEEEEEECC-------CCCCCccchHHHHHHHHHHh--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc
Confidence 45689999999999 88776655555666777764 4679999999998864 79999999999999999999
Q ss_pred hhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCc
Q 036659 101 VFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTK 180 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~ 180 (300)
++.++|||+|..|-....+.++++|+.. ....|+.. ++--..+.-.+. .--+|. .+-...++|..-.+..+
T Consensus 153 ~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~-~~~~p~------~~v~~~~~~~~~~~~~~ 223 (270)
T 1h65_A 153 IWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQV-VRSGASLKKDAQ-ASDIPV------VLIENSGRCNKNDSDEK 223 (270)
T ss_dssp GGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHH-HHHHTTCCTTSG-GGCCCE------EECCCCTTCCBCTTSCB
T ss_pred cccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHH-HHHhhhhhhhhh-hccCCE------EEEeCCCcccccCCCce
Confidence 9999999999999655444589998865 23445440 000000000000 000010 11112233322111111
Q ss_pred chhhchHHHHHHHHHHHHHHHHcCCCCCCh-HHHHHH
Q 036659 181 DEAKRTEQIWKLLSLVNSVAVQNDGQPYTD-DIFVEL 216 (300)
Q Consensus 181 de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~-e~f~e~ 216 (300)
--.....+...||..+..++..++...+.| .++...
T Consensus 224 v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~~~~ 260 (270)
T 1h65_A 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKL 260 (270)
T ss_dssp BCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHH
T ss_pred ECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHhcCC
Confidence 001123578899999999999998886555 555543
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.07 E-value=4.2e-05 Score=63.81 Aligned_cols=128 Identities=9% Similarity=0.053 Sum_probs=79.3
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHH--HHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKF--VGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~--v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
.++..+.++||| |+.++...... .-..+........+++|++|+|+....+++..+...+..+.. .
T Consensus 76 ~~~~~~~l~Dtp-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~ 143 (223)
T 4dhe_A 76 AAEPVAHLVDLP-------GYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----T 143 (223)
T ss_dssp TTSCSEEEEECC-------CCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----G
T ss_pred CCCCcEEEEcCC-------CCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----c
Confidence 457899999999 76554433221 112233222234678999999999988899888887777655 2
Q ss_pred hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhh-------cCCeEEE
Q 036659 102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQL-------CDNRCVL 174 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~-------C~~R~~~ 174 (300)
-..+|||+|.-|.+.. ..++..+.. +++ .+.. .+..++.
T Consensus 144 ~~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~---------------------------~l~~~~~~~~~~~~~~~~ 189 (223)
T 4dhe_A 144 GKPIHSLLTKCDKLTR--QESINALRA-----TQK---------------------------SLDAYRDAGYAGKLTVQL 189 (223)
T ss_dssp CCCEEEEEECGGGSCH--HHHHHHHHH-----HHH---------------------------HHHHHHHHTCCSCEEEEE
T ss_pred CCCEEEEEeccccCCh--hhHHHHHHH-----HHH---------------------------HHHhhhhcccCCCCeEEE
Confidence 2468899998887654 233333322 222 2222 3445666
Q ss_pred EeCCCcchhhchHHHHHHHHHHHHHHHHc
Q 036659 175 FDNKTKDEAKRTEQIWKLLSLVNSVAVQN 203 (300)
Q Consensus 175 FnNk~~de~~~~~Qv~eLL~~Ve~mv~~N 203 (300)
.+.++ ...|.+|++.|.+++...
T Consensus 190 ~SA~~------g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 190 FSALK------RTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EBTTT------TBSHHHHHHHHHHHHC--
T ss_pred eecCC------CcCHHHHHHHHHHhcCcc
Confidence 66554 247889999988877544
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.00 E-value=2.5e-05 Score=71.15 Aligned_cols=135 Identities=11% Similarity=0.147 Sum_probs=88.8
Q ss_pred eeC-CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHHhchh
Q 036659 23 RIQ-VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSWQTLFGKN 100 (300)
Q Consensus 23 ~~~-Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a-l~~lq~lFG~~ 100 (300)
..+ +..+++|||| |+.++. ....+.+.+..+...+-+++|++|+|+.+...++.++... ++.+..
T Consensus 54 ~~~~~~~i~lvDTP-------G~~~~~-~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----- 120 (308)
T 3iev_A 54 NIPNEAQIIFLDTP-------GIYEPK-KSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----- 120 (308)
T ss_dssp EETTTEEEEEEECC-------CCCCCC-TTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----
T ss_pred ecCCCCeEEEEECc-------CCCccc-cchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----
Confidence 456 8999999999 988765 3345666777766666679999999999987899888776 555544
Q ss_pred hhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCc
Q 036659 101 VFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTK 180 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~ 180 (300)
.-..+|+|++--|...+. ..+.+.+.. +-+.+++...+|--.+.
T Consensus 121 ~~~pvilV~NK~Dl~~~~-~~~~~~~~~-----------------------------------l~~~~~~~~~i~~vSA~ 164 (308)
T 3iev_A 121 LNKPVIVVINKIDKIGPA-KNVLPLIDE-----------------------------------IHKKHPELTEIVPISAL 164 (308)
T ss_dssp GCCCEEEEEECGGGSSSG-GGGHHHHHH-----------------------------------HHHHCTTCCCEEECBTT
T ss_pred cCCCEEEEEECccCCCCH-HHHHHHHHH-----------------------------------HHHhccCCCeEEEEeCC
Confidence 234688888888866332 344444432 33334322223333322
Q ss_pred chhhchHHHHHHHHHHHHHHHHcCCCCCChH
Q 036659 181 DEAKRTEQIWKLLSLVNSVAVQNDGQPYTDD 211 (300)
Q Consensus 181 de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e 211 (300)
. ...|.+|++.|...+.+. ..+|..+
T Consensus 165 ~----g~gv~~L~~~l~~~l~~~-~~~~~~~ 190 (308)
T 3iev_A 165 K----GANLDELVKTILKYLPEG-EPLFPED 190 (308)
T ss_dssp T----TBSHHHHHHHHHHHSCBC-CCSSCTT
T ss_pred C----CCCHHHHHHHHHHhCccC-CCCCCcc
Confidence 2 358999999998888643 4456543
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.89 E-value=0.00019 Score=57.67 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=76.5
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChH--HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSK--FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e--~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
+..+.++||| |+.+...+.. ..-..+.....-..++++++++|+.....++..+...+..+... -.
T Consensus 67 ~~~~~i~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~ 134 (195)
T 3pqc_A 67 NSKYYFVDLP-------GYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NI 134 (195)
T ss_dssp TTTEEEEECC-------CBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TC
T ss_pred CCcEEEEECC-------CCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CC
Confidence 4568899999 7544333221 11223333333345789999999999878888888777776654 34
Q ss_pred ceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC-CeEEEEeCCCcch
Q 036659 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD-NRCVLFDNKTKDE 182 (300)
Q Consensus 104 y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~-~R~~~FnNk~~de 182 (300)
..|||.|.-|.+.. ...+..+.. ++. ++...+ ..|+....++
T Consensus 135 p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~---------------------------~~~~~~~~~~~~~Sa~~--- 177 (195)
T 3pqc_A 135 PFTIVLTKMDKVKM--SERAKKLEE-----HRK---------------------------VFSKYGEYTIIPTSSVT--- 177 (195)
T ss_dssp CEEEEEECGGGSCG--GGHHHHHHH-----HHH---------------------------HHHSSCCSCEEECCTTT---
T ss_pred CEEEEEEChhcCCh--HHHHHHHHH-----HHH---------------------------HHhhcCCCceEEEecCC---
Confidence 67888898886644 234444322 222 333322 2455555443
Q ss_pred hhchHHHHHHHHHHHHHHHH
Q 036659 183 AKRTEQIWKLLSLVNSVAVQ 202 (300)
Q Consensus 183 ~~~~~Qv~eLL~~Ve~mv~~ 202 (300)
...|.+|++.|.+++.+
T Consensus 178 ---~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 178 ---GEGISELLDLISTLLKE 194 (195)
T ss_dssp ---CTTHHHHHHHHHHHHC-
T ss_pred ---CCCHHHHHHHHHHHhhc
Confidence 24788999988887754
No 9
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.61 E-value=0.0012 Score=53.37 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=52.1
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHH--HHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKF--VGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~--v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
..+.++||| |+.+...+.+. .-..+........+++|++++|+.+..+++..+...+..+.. .-..
T Consensus 69 ~~~~l~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p 136 (195)
T 1svi_A 69 DELHFVDVP-------GYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIP 136 (195)
T ss_dssp TTEEEEECC-------CBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCC
T ss_pred CcEEEEECC-------CCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCC
Confidence 368999999 87665544321 111222222223467899999999988899988776666654 2235
Q ss_pred eEEEEEcCCCCCC
Q 036659 105 MIVVFTGGDELED 117 (300)
Q Consensus 105 ~IVlFT~gD~Le~ 117 (300)
.+||+|.-|....
T Consensus 137 ~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 137 VIVIATKADKIPK 149 (195)
T ss_dssp EEEEEECGGGSCG
T ss_pred EEEEEECcccCCh
Confidence 7888898886654
No 10
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.57 E-value=5.5e-05 Score=67.16 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=54.9
Q ss_pred ccCCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCC
Q 036659 63 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKV 141 (300)
Q Consensus 63 ~l~~pGpHA~LLV~~v~~-rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~ 141 (300)
.+..+++|++|+|+.... .+++.+...++.+.. ...+|+|+|..|.+.. ..+..+... +++
T Consensus 110 ~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~--~e~~~~~~~-----i~~----- 171 (274)
T 3t5d_A 110 QMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP--EECQQFKKQ-----IMK----- 171 (274)
T ss_dssp SCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH--HHHHHHHHH-----HHH-----
T ss_pred cccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH--HHHHHHHHH-----HHH-----
Confidence 456678999999996543 689999887777654 4578999999997754 345544432 333
Q ss_pred CchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchhhchHHHHHHHHHHHHH
Q 036659 142 PYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSV 199 (300)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~m 199 (300)
.+..++-+++.|..++ ...+.+|++.+.++
T Consensus 172 ----------------------~l~~~~i~v~~~sa~~------~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 172 ----------------------EIQEHKIKIYEFPETD------DEEENKLVKKIKDR 201 (274)
T ss_dssp ----------------------HHHHTTCCCCCC-----------------CHHHHHT
T ss_pred ----------------------HHHHcCCeEEcCCCCC------ChhHHHHHHHHhcC
Confidence 4566666776666543 24566677666554
No 11
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.41 E-value=0.012 Score=46.42 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=76.4
Q ss_pred CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 036659 12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH 91 (300)
Q Consensus 12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~ 91 (300)
+|...... +..++|..+.++||| |.-+.... ......+.|++|+|+.+....+.+....+.
T Consensus 41 ~~~~~~~~-~~~~~~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~ 101 (178)
T 2lkc_A 41 ITQHIGAY-QVTVNDKKITFLDTP-------GHEAFTTM-----------RARGAQVTDIVILVVAADDGVMPQTVEAIN 101 (178)
T ss_dssp SSTTCCCC-EEEETTEEEEESCCC-------SSSSSSCS-----------CCSSCCCCCEEEEEEETTCCCCHHHHHHHH
T ss_pred eeEeeeEE-EEEeCCceEEEEECC-------CCHHHHHH-----------HHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence 34444333 356789999999999 64333211 123457899999999998777776665554
Q ss_pred HHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCe
Q 036659 92 SWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNR 171 (300)
Q Consensus 92 ~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R 171 (300)
.+ ...+ .-.+||+|--|-...+...+.+++.. +.. +...+++.
T Consensus 102 ~~---~~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~---------------------------~~~~~~~~ 144 (178)
T 2lkc_A 102 HA---KAAN--VPIIVAINKMDKPEANPDRVMQELME-----YNL---------------------------VPEEWGGD 144 (178)
T ss_dssp HH---GGGS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTC---------------------------CBTTTTSS
T ss_pred HH---HhCC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCc---------------------------ChhHcCCc
Confidence 33 2222 34788888878554321233334422 111 22334443
Q ss_pred EEEEeCCCcchhhchHHHHHHHHHHHHHHHHc
Q 036659 172 CVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQN 203 (300)
Q Consensus 172 ~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~N 203 (300)
+.+|--.++. ...|.+|++.+-..+...
T Consensus 145 ~~~~~~Sa~~----~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 145 TIFCKLSAKT----KEGLDHLLEMILLVSEME 172 (178)
T ss_dssp EEEEECCSSS----SHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEecCC----CCCHHHHHHHHHHhhhhh
Confidence 4444444333 257888988887766543
No 12
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.18 E-value=0.0026 Score=58.08 Aligned_cols=81 Identities=19% Similarity=0.099 Sum_probs=57.8
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
..++..++++||| |++++.. .+.+.+......+-.+.|++|+|+.+..+++..+...++.+...++ -
T Consensus 51 ~~~~~~l~l~DTp-------G~~~~~~---~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~ 117 (301)
T 1wf3_A 51 TEGRRQIVFVDTP-------GLHKPMD---ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---K 117 (301)
T ss_dssp EETTEEEEEEECC-------CCCCCCS---HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---T
T ss_pred EeCCcEEEEecCc-------cccchhh---HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---C
Confidence 3568899999999 9887542 4444555555556679999999999987899988777776665431 1
Q ss_pred cceEEEEEcCCCCC
Q 036659 103 DYMIVVFTGGDELE 116 (300)
Q Consensus 103 ~y~IVlFT~gD~Le 116 (300)
...|+|.+--|...
T Consensus 118 ~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 118 VPILLVGNKLDAAK 131 (301)
T ss_dssp SCEEEEEECGGGCS
T ss_pred CCEEEEEECcccCC
Confidence 34667777666543
No 13
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.10 E-value=0.0014 Score=58.20 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=49.0
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCC--hHHHHHHHHHhhccCCCCCeEEEEEEeC-CCCCCHHHH-HHHHHHHHHhchh
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAG--SKFVGKEIVTCIGMAKDGIHAVLVVFSV-RSRFSQEEE-AALHSWQTLFGKN 100 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~--~e~v~kEI~~ci~l~~pGpHA~LLV~~v-~~rfT~EE~-~al~~lq~lFG~~ 100 (300)
++..+++|||| |+.+.... ++.+.+.+......+-.++|++++|+.. ...++..+. ..+..+. .
T Consensus 129 ~~~~~~lvDTp-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~- 196 (315)
T 1jwy_B 129 HVVNLTLVDLP-------GITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----P- 196 (315)
T ss_dssp TSCSEEEEECC-------CCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----S-
T ss_pred CCCCcEEEECC-------CCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----C-
Confidence 45689999999 88753211 1122222333333233478888888876 445665443 4444332 1
Q ss_pred hhcceEEEEEcCCCCCCCcccHHHhhh
Q 036659 101 VFDYMIVVFTGGDELEDNDETLEDYLG 127 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le~~~~tledyl~ 127 (300)
.-..+|+|+|--|.+... ..+.+++.
T Consensus 197 ~~~~~i~v~NK~Dl~~~~-~~~~~~~~ 222 (315)
T 1jwy_B 197 EGKRTIGVITKLDLMDKG-TDAMEVLT 222 (315)
T ss_dssp SCSSEEEEEECTTSSCSS-CCCHHHHT
T ss_pred CCCcEEEEEcCcccCCcc-hHHHHHHh
Confidence 235789999999977543 22344443
No 14
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.04 E-value=0.0024 Score=54.10 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=46.5
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHH-H-HHHHHHhhccCCCCCeEEEEEEeCCCCCCH---HHHHHHHHHHHHh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKF-V-GKEIVTCIGMAKDGIHAVLVVFSVRSRFSQ---EEEAALHSWQTLF 97 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~-v-~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~---EE~~al~~lq~lF 97 (300)
..++..+.++||| |..+.+..... . ..-+.. ...+.+++|+|+.+..+.|- .+...+..+...+
T Consensus 72 ~~~~~~~~l~Dtp-------G~~~~~~~~~~~~~~~~~~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~ 140 (228)
T 2qu8_A 72 DHKLNKYQIIDTP-------GLLDRAFENRNTIEMTTITA----LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF 140 (228)
T ss_dssp EETTEEEEEEECT-------TTTTSCGGGCCHHHHHHHHH----HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC
T ss_pred ecCCCeEEEEECC-------CCcCcccchhhhHHHHHHHH----hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh
Confidence 4567899999999 87664322111 1 111222 13577999999999866442 2233344443322
Q ss_pred chhhhcceEEEEEcCCCCCC
Q 036659 98 GKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 98 G~~i~~y~IVlFT~gD~Le~ 117 (300)
+ -..+|||+|--|....
T Consensus 141 ~---~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 141 S---NKSIVIGFNKIDKCNM 157 (228)
T ss_dssp ----CCCEEEEEECGGGCC-
T ss_pred c---CCcEEEEEeCcccCCc
Confidence 1 2357888888786543
No 15
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.97 E-value=0.0014 Score=60.31 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=49.8
Q ss_pred CEEEEEEeCCCCcccCcccCCCCC--ChHHHHHHHHHhhccCCCCCeEEEEEEeCCC-C-CCHHHHHHHHHHHHHhchhh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSA--GSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS-R-FSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~--~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~-r-fT~EE~~al~~lq~lFG~~i 101 (300)
+..+++|||| |+++... .+..+.+.+...+...-.+||++|+|+...+ . .+.+ .+..++.+ .+ .
T Consensus 135 ~~~l~lvDtP-------G~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~---~~~l~~~~-~~-~ 202 (360)
T 3t34_A 135 VVNLTLIDLP-------GLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKISREV-DP-S 202 (360)
T ss_dssp SCSEEEEECC-------CBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH---HHHHHHHS-CT-T
T ss_pred CCCeEEEECC-------CCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH---HHHHHHHh-cc-c
Confidence 5579999999 8887532 2334555666655555679998888876432 2 2322 23333322 22 2
Q ss_pred hcceEEEEEcCCCCCC
Q 036659 102 FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~ 117 (300)
-..+|+|+|-.|.+..
T Consensus 203 ~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 203 GDRTFGVLTKIDLMDK 218 (360)
T ss_dssp CTTEEEEEECGGGCCT
T ss_pred CCCEEEEEeCCccCCC
Confidence 3469999999997764
No 16
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.96 E-value=0.0034 Score=63.92 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=45.9
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI 106 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I 106 (300)
..+++|||| |+.++..... -+...+ ++.|++|+|+.....+|..+...+... .... -..++
T Consensus 174 ~~l~LiDTP-------Gl~~~~~~~~----~~~~~i----~~aD~vL~Vvda~~~~s~~e~~~l~~~---l~~~-~~~ii 234 (695)
T 2j69_A 174 KGIEIVDSP-------GLNDTEARNE----LSLGYV----NNCHAILFVMRASQPCTLGERRYLENY---IKGR-GLTVF 234 (695)
T ss_dssp TTEEEEECC-------CHHHHHTCHH----HHTHHH----HSSSEEEEEEETTSTTCHHHHHHHHHH---TTTS-CCCEE
T ss_pred CCeEEEECC-------CCCchhhHHH----HHHHHH----HhCCEEEEEEeCCCccchhHHHHHHHH---HHhh-CCCEE
Confidence 359999999 8765432111 112222 478999999999878998887655422 2211 22488
Q ss_pred EEEEcCCCCC
Q 036659 107 VVFTGGDELE 116 (300)
Q Consensus 107 VlFT~gD~Le 116 (300)
+|+|.-|.+.
T Consensus 235 iVlNK~Dl~~ 244 (695)
T 2j69_A 235 FLVNAWDQVR 244 (695)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 9999888654
No 17
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.86 E-value=0.0041 Score=48.31 Aligned_cols=78 Identities=17% Similarity=0.088 Sum_probs=52.8
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...+|..+.++||| |..+........ .........+.|++++|+.+..+++..+......+.. .
T Consensus 44 ~~~~~~~~~l~Dt~-------G~~~~~~~~~~~----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~ 107 (161)
T 2dyk_A 44 VETDRGRFLLVDTG-------GLWSGDKWEKKI----QEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR-----K 107 (161)
T ss_dssp EEETTEEEEEEECG-------GGCSSSSCCHHH----HHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-----H
T ss_pred EEeCCceEEEEECC-------CCCCccchHHHH----HHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh-----c
Confidence 45688999999999 766543212222 2222223468899999999987899888766666655 2
Q ss_pred hcceEEEEEcCCCC
Q 036659 102 FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 ~~y~IVlFT~gD~L 115 (300)
-...+||.|.-|..
T Consensus 108 ~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 108 GKPVILVATKVDDP 121 (161)
T ss_dssp TCCEEEEEECCCSG
T ss_pred CCCEEEEEECcccc
Confidence 24578888887754
No 18
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.77 E-value=0.00039 Score=66.51 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=56.7
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.++|..+... ...++|+.+.||||| |+.+. .+.+.+++..+...+.+++|++|+|+.....+|..+...
T Consensus 55 ~g~t~~~~~~-~~~~~~~~~~liDT~-------G~~~~---~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l 123 (456)
T 4dcu_A 55 PGVTRDRIYS-SAEWLNYDFNLIDTG-------GIDIG---DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV 123 (456)
T ss_dssp ------CEEE-ECTTCSSCCEEECCC-------C---------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHH
T ss_pred CCcceeEEEE-EEEECCceEEEEECC-------CCCCc---chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHH
Confidence 4566666555 346789999999999 76632 233456666667667778999999999987899999887
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
++.+.. .-..+|||.+--|..
T Consensus 124 ~~~l~~-----~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 124 AKILYR-----TKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHTT-----CCSCEEEEEECC---
T ss_pred HHHHHH-----cCCCEEEEEECccch
Confidence 777654 234566777766644
No 19
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.77 E-value=0.0037 Score=59.73 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCC----ChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSA----GSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE 86 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~----~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE 86 (300)
+.|..+... ...++|+.+.++||| |+.+.+. ...+-..-...++ .+.+++|+|+.+...+++.+
T Consensus 228 gtt~~~~~~-~~~~~~~~~~l~DT~-------G~~~~~~~~~~~e~~~~~~~~~~~----~~ad~~llviD~~~~~~~~~ 295 (456)
T 4dcu_A 228 GTTRDAVDT-SFTYNQQEFVIVDTA-------GMRKKGKVYETTEKYSVLRALKAI----DRSEVVAVVLDGEEGIIEQD 295 (456)
T ss_dssp ----CTTSE-EEEETTEEEEETTGG-------GTTTBTTBCCCCSHHHHHHHHHHH----HHCSEEEEEEETTTCCCHHH
T ss_pred CeEEEEEEE-EEEECCceEEEEECC-------CCCcCcccchHHHHHHHHHHHHHH----hhCCEEEEEEeCCCCcCHHH
Confidence 344444333 356789999999999 6543221 1122111111222 36689999999988899988
Q ss_pred HHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhh
Q 036659 87 EAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQ 166 (300)
Q Consensus 87 ~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~ 166 (300)
...+..+.. .| .-+|||.+--|-.+....+.+++... +++ .+.
T Consensus 296 ~~~~~~~~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~---------------------------~~~ 338 (456)
T 4dcu_A 296 KRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRD---------------------------HFQ 338 (456)
T ss_dssp HHHHHHHHH-TT----CEEEEEEECGGGSCCCSSHHHHHHHH-----HHH---------------------------HCG
T ss_pred HHHHHHHHH-cC----CCEEEEEEChhcCCCchHHHHHHHHH-----HHH---------------------------hcc
Confidence 887777665 22 45677777777655433344544432 222 222
Q ss_pred hcCC-eEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHH
Q 036659 167 LCDN-RCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDI 212 (300)
Q Consensus 167 ~C~~-R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~ 212 (300)
..++ .++....++. .-|.+|++.|...+.+.....-|..+
T Consensus 339 ~~~~~~~~~~SA~~g------~gv~~l~~~i~~~~~~~~~~~~t~~l 379 (456)
T 4dcu_A 339 FLDYAPILFMSALTK------KRIHTLMPAIIKASENHSLRVQTNVL 379 (456)
T ss_dssp GGTTSCEEECCTTTC------TTGGGHHHHHHHHHHHHTCCCCHHHH
T ss_pred cCCCCCEEEEcCCCC------cCHHHHHHHHHHHHHHhcccCCHHHH
Confidence 2222 4555554432 46788998888888777665444443
No 20
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.61 E-value=0.0037 Score=59.41 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=57.3
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.++|...... ...|+|+.+.++||| |+...+ .+.+..++......+..+.|++|+|+.+...+|..+...
T Consensus 33 ~g~T~d~~~~-~~~~~~~~~~l~DT~-------G~~~~~--~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i 102 (439)
T 1mky_A 33 EGVTRDPVQD-TVEWYGKTFKLVDTC-------GVFDNP--QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESL 102 (439)
T ss_dssp -----CCSEE-EEEETTEEEEEEECT-------TTTSSG--GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHH
T ss_pred CCCccceeeE-EEEECCeEEEEEECC-------Cccccc--cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence 4666666554 467899999999999 654321 111223344444445578999999999988899988776
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
...++.. -...|||.+--|.
T Consensus 103 ~~~l~~~-----~~p~ilv~NK~D~ 122 (439)
T 1mky_A 103 ADFLRKS-----TVDTILVANKAEN 122 (439)
T ss_dssp HHHHHHH-----TCCEEEEEESCCS
T ss_pred HHHHHHc-----CCCEEEEEeCCCC
Confidence 6666542 2456777776663
No 21
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.60 E-value=0.056 Score=52.87 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=45.4
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
...++|..+.++||| |+.++. +.+..+-.+.......+.|++|+|+.+....+.++......+...+.
T Consensus 275 ~i~~~g~~l~liDT~-------G~~~~~---~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-- 342 (476)
T 3gee_A 275 CFIHDKTMFRLTDTA-------GLREAG---EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-- 342 (476)
T ss_dssp EEEETTEEEEEEC------------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--
T ss_pred EEEECCeEEEEEECC-------CCCcch---hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--
Confidence 456899999999999 876533 22222222223345678999999999987888744333333333333
Q ss_pred hhcceEEEEEcCCCCCC
Q 036659 101 VFDYMIVVFTGGDELED 117 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le~ 117 (300)
-..+|||++--|....
T Consensus 343 -~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 343 -AAKFLTVANKLDRAAN 358 (476)
T ss_dssp -TSEEEEEEECTTSCTT
T ss_pred -CCCEEEEEECcCCCCc
Confidence 2567888888785544
No 22
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.59 E-value=0.049 Score=53.09 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=50.2
Q ss_pred CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
.|..+... ...++|..+.++||| |+.++.. .+... +.++. ....+.|++|+|+.+..+++.++...+
T Consensus 258 tT~d~~~~-~i~~~g~~v~liDT~-------G~~~~~~---~ve~~gi~~~~-~~~~~aD~vl~VvD~s~~~~~~~~~i~ 325 (462)
T 3geh_A 258 TTRDVVES-QLVVGGIPVQVLDTA-------GIRETSD---QVEKIGVERSR-QAANTADLVLLTIDAATGWTTGDQEIY 325 (462)
T ss_dssp CCHHHHHH-EEEETTEEEEECC-------------------------------CCCCSCSEEEEEEETTTCSCHHHHHHH
T ss_pred eeEEEEEE-EEEECCEEEEEEECC-------ccccchh---HHHHHHHHHHh-hhhhcCCEEEEEeccCCCCCHHHHHHH
Confidence 44444333 356899999999999 7755432 22222 22332 345789999999999889999886666
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
..+.. ..+|||++--|....
T Consensus 326 ~~l~~-------~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 326 EQVKH-------RPLILVMNKIDLVEK 345 (462)
T ss_dssp HHHTT-------SCEEEEEECTTSSCG
T ss_pred HhccC-------CcEEEEEECCCCCcc
Confidence 55532 478999998885543
No 23
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.52 E-value=0.004 Score=59.18 Aligned_cols=149 Identities=13% Similarity=0.144 Sum_probs=80.1
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
+.|..+... ...++|+.+.+|||| |+.+.....+.+.+- ..+.+. +..+.|++|+|+.+...+|.++...
T Consensus 208 gtT~d~~~~-~~~~~~~~~~l~DT~-------G~~~~~~~~~~~e~~~~~~~~~-~~~~ad~~llv~D~~~~~s~~~~~~ 278 (436)
T 2hjg_A 208 GTTRDAVDT-SFTYNQQEFVIVDTA-------GMRKKGKVYETTEKYSVLRALK-AIDRSEVVAVVLDGEEGIIEQDKRI 278 (436)
T ss_dssp ------CCE-EEEETTEEEEETTHH-------HHTCBTTBCCCCSHHHHHHHHH-HHHHCSEEEEEEETTTCCCHHHHHH
T ss_pred CceeeeeEE-EEEECCeEEEEEECC-------CcCcCccccchHHHHHHHHHHH-HHHhCCEEEEEEcCCcCCcHHHHHH
Confidence 344444333 356789999999999 664433211111110 111111 1235689999999988899988765
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhc-
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLC- 168 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C- 168 (300)
+..+.. .-..+|||++--|-.+....+.+++... +.. .+...
T Consensus 279 ~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~---------------------------~l~~~~ 321 (436)
T 2hjg_A 279 AGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEEN-----IRD---------------------------HFQFLD 321 (436)
T ss_dssp HHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHH-----HHH---------------------------HCGGGT
T ss_pred HHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHH-----HHH---------------------------hcccCC
Confidence 554432 2356788888888665432233333322 111 11111
Q ss_pred CCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChH
Q 036659 169 DNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDD 211 (300)
Q Consensus 169 ~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e 211 (300)
+-.++....++. ..|.+|+..+...+.+.....-|..
T Consensus 322 ~~~~~~~SA~tg------~~v~~l~~~i~~~~~~~~~~~~t~~ 358 (436)
T 2hjg_A 322 YAPILFMSALTK------KRIHTLMPAIIKASENHSLRVQTNV 358 (436)
T ss_dssp TSCEEECCTTTC------TTGGGHHHHHHHHHHHHTCCCCHHH
T ss_pred CCCEEEEecccC------CCHHHHHHHHHHHHHHhhcCCCHHH
Confidence 224554444432 4778888888888877665444433
No 24
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.32 E-value=0.0025 Score=55.76 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=48.8
Q ss_pred CEEEEEEeCCCCcccCcccCCCCC--ChH----HHHHHHHHhhccCCCCCe-EEEEEEeCCCCCCHHHH-HHHHHHHHHh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSA--GSK----FVGKEIVTCIGMAKDGIH-AVLVVFSVRSRFSQEEE-AALHSWQTLF 97 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~--~~e----~v~kEI~~ci~l~~pGpH-A~LLV~~v~~rfT~EE~-~al~~lq~lF 97 (300)
+..+.+|||| |+.+... .++ ....-+...+. +.| ++|+|+.....++..+. ..++.+
T Consensus 124 ~~~l~lvDtp-------G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~d~~~~~~~~~~~~~~~~~---- 188 (299)
T 2aka_B 124 VLNLTLVDLP-------GMTKVPVGDQPPDIEFQIRDMLMQFVT----KENCLILAVSPANSDLANSDALKIAKEV---- 188 (299)
T ss_dssp CCSEEEEECC-------CBCSSCCSSSCTTHHHHHHHHHHHHHT----STTEEEEEEEESSSCGGGCHHHHHHHHH----
T ss_pred CCCceEEeCC-------CCCCCcCCCCCchHHHHHHHHHHHHHc----CCCeEEEEEecCCcchhhhHHHHHHHHh----
Confidence 4789999999 8876432 122 22223333332 455 45578998767777664 223222
Q ss_pred chhhhcceEEEEEcCCCCCCCcccHHHhhh
Q 036659 98 GKNVFDYMIVVFTGGDELEDNDETLEDYLG 127 (300)
Q Consensus 98 G~~i~~y~IVlFT~gD~Le~~~~tledyl~ 127 (300)
.. .-..+|+|+|--|.+... ..+.+++.
T Consensus 189 ~~-~~~~~i~V~NK~Dl~~~~-~~~~~~~~ 216 (299)
T 2aka_B 189 DP-QGQRTIGVITKLDLMDEG-TDARDVLE 216 (299)
T ss_dssp CT-TCSSEEEEEECGGGSCTT-CCCHHHHT
T ss_pred CC-CCCeEEEEEEccccCCCC-chHHHHHh
Confidence 21 235789999999976542 22444543
No 25
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.19 E-value=0.016 Score=51.03 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=47.7
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|..+.++||| |.++...... .+......+..++++++++|+... .+ ...+..+..+.....
T Consensus 45 ~~~~~~~~~l~Dtp-------G~~~~~~~~~---~~~~~~~~~~~~~~d~vi~v~D~~-~~----~~~~~~~~~~~~~~~ 109 (271)
T 3k53_A 45 MEYREKEFLVVDLP-------GIYSLTAHSI---DELIARNFILDGNADVIVDIVDST-CL----MRNLFLTLELFEMEV 109 (271)
T ss_dssp EEETTEEEEEEECC-------CCSCCCSSCH---HHHHHHHHHHTTCCSEEEEEEEGG-GH----HHHHHHHHHHHHTTC
T ss_pred EEECCceEEEEeCC-------CccccccCCH---HHHHHHHhhhccCCcEEEEEecCC-cc----hhhHHHHHHHHhcCC
Confidence 46789999999999 8887654322 122222233457899999999987 33 234444444443321
Q ss_pred hcceEEEEEcCCC
Q 036659 102 FDYMIVVFTGGDE 114 (300)
Q Consensus 102 ~~y~IVlFT~gD~ 114 (300)
.-+||+.+--|.
T Consensus 110 -~p~ilv~NK~Dl 121 (271)
T 3k53_A 110 -KNIILVLNKFDL 121 (271)
T ss_dssp -CSEEEEEECHHH
T ss_pred -CCEEEEEEChhc
Confidence 456777776663
No 26
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.07 E-value=0.0023 Score=56.89 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=50.4
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChH--HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSK--FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA 88 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e--~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~ 88 (300)
++|...... ...++|..+.+|||| |..+.+.... .....+.+-. +...++|++|+|+.+. .. +..
T Consensus 33 g~Tv~~~~~-~~~~~~~~~~lvDtp-------G~~~~~~~~~~~~~~e~i~~~~-~~~~~~d~vi~VvDas-~~-~~~-- 99 (256)
T 3iby_A 33 GVTVEKKTG-EFLLGEHLIEITDLP-------GVYSLVANAEGISQDEQIAAQS-VIDLEYDCIINVIDAC-HL-ERH-- 99 (256)
T ss_dssp TSSSEEEEE-EEEETTEEEEEEECC-------CCSSCC------CHHHHHHHHH-HHHSCCSEEEEEEEGG-GH-HHH--
T ss_pred CceEEEEEE-EEEECCeEEEEEeCC-------CcccccccccCCCHHHHHHHHH-HhhCCCCEEEEEeeCC-Cc-hhH--
Confidence 455444443 345789999999999 8877654210 1222233322 2236899999999987 31 222
Q ss_pred HHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 89 ALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 89 al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
+.....+.. .-..+|||++--|...
T Consensus 100 -~~l~~~l~~--~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 100 -LYLTSQLFE--LGKPVVVALNMMDIAE 124 (256)
T ss_dssp -HHHHHHHTT--SCSCEEEEEECHHHHH
T ss_pred -HHHHHHHHH--cCCCEEEEEEChhcCC
Confidence 222222221 1346888888777543
No 27
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.06 E-value=0.072 Score=49.03 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=51.1
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCC--hHHHHHHHHHhhc-cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAG--SKFVGKEIVTCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~--~e~v~kEI~~ci~-l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
+..+++|||| |+++.... ++.+...+...+. ......+++|+|++....++..+. +..+..+-. .-
T Consensus 129 ~~~l~lvDTP-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~i~~~~~~--~~ 197 (353)
T 2x2e_A 129 VLNLTLVDLP-------GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKVAKEVDP--QG 197 (353)
T ss_dssp CCSEEEEECC-------CBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HHHHHHHCT--TC
T ss_pred CCCcEEEECC-------CCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HHHHHHhCc--CC
Confidence 5689999999 88864331 2322222222221 123445677778887656776653 223333322 23
Q ss_pred cceEEEEEcCCCCCCCcccHHHhhh
Q 036659 103 DYMIVVFTGGDELEDNDETLEDYLG 127 (300)
Q Consensus 103 ~y~IVlFT~gD~Le~~~~tledyl~ 127 (300)
..+|+|+|--|.+... ..+.+++.
T Consensus 198 ~~~i~V~NK~Dl~~~~-~~~~~~~~ 221 (353)
T 2x2e_A 198 QRTIGVITKLDLMDEG-TDARDVLE 221 (353)
T ss_dssp TTEEEEEECGGGSCTT-CCCHHHHT
T ss_pred CceEEEeccccccCcc-hhHHHHHh
Confidence 5789999999977542 23455554
No 28
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.91 E-value=0.095 Score=42.14 Aligned_cols=76 Identities=14% Similarity=0.022 Sum_probs=44.7
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
....+..+.++||| |.-+.. ........+.|++|+|+.+..+-|-++ ...++..+.....
T Consensus 58 ~~~~~~~~~i~Dt~-------G~~~~~-----------~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~ 117 (199)
T 4bas_A 58 FEKGRVAFTVFDMG-------GAKKFR-----------GLWETYYDNIDAVIFVVDSSDHLRLCV--VKSEIQAMLKHED 117 (199)
T ss_dssp EEETTEEEEEEEEC-------CSGGGG-----------GGGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTSHH
T ss_pred EEeCCEEEEEEECC-------CCHhHH-----------HHHHHHHhcCCEEEEEEECCcHHHHHH--HHHHHHHHHhChh
Confidence 34678899999999 653211 112233568999999999985433222 2234444444322
Q ss_pred ---------hcceEEEEEcCCCCCC
Q 036659 102 ---------FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 ---------~~y~IVlFT~gD~Le~ 117 (300)
-..+|||.|--|....
T Consensus 118 ~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 118 IRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp HHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred hhhcccccCCCCEEEEEECcCCCCC
Confidence 2346777777775543
No 29
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.87 E-value=0.24 Score=39.59 Aligned_cols=75 Identities=8% Similarity=0.021 Sum_probs=45.5
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN- 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~- 100 (300)
..+++..+.++||| |.-+ .........++.|++++|+.+..+-|-++ +...+..+....
T Consensus 57 ~~~~~~~~~~~Dt~-------G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~ 116 (186)
T 1ksh_A 57 LEHRGFKLNIWDVG-------GQKS-----------LRSYWRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEER 116 (186)
T ss_dssp EEETTEEEEEEEEC-------CSHH-----------HHTTGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGG
T ss_pred EEECCEEEEEEECC-------CCHh-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChh
Confidence 45689999999999 7521 12223344678999999999975444322 233444443321
Q ss_pred -hhcceEEEEEcCCCCC
Q 036659 101 -VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 -i~~y~IVlFT~gD~Le 116 (300)
.-.-.|||.|--|-..
T Consensus 117 ~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 117 LAGATLLIFANKQDLPG 133 (186)
T ss_dssp GTTCEEEEEEECTTSTT
T ss_pred cCCCcEEEEEeCccCCC
Confidence 1234677777777544
No 30
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.76 E-value=0.37 Score=38.01 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=39.4
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y~ 105 (300)
..+.++||| |.-+.... .... ..+.|++|+|+.+....|-++. ..+..+....+ ..+
T Consensus 93 ~~~~i~Dt~-------G~~~~~~~-------~~~~----~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pi 150 (208)
T 3clv_A 93 IKFDIWDTA-------GQERYASI-------VPLY----YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YII 150 (208)
T ss_dssp EEEEEEECT-------TGGGCTTT-------HHHH----HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEE
T ss_pred eEEEEEECC-------CcHHHHHH-------HHHH----hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcE
Confidence 789999999 64332211 1111 2477899999998744333321 22223333222 678
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
|||+|.-| +.
T Consensus 151 ilv~NK~D-~~ 160 (208)
T 3clv_A 151 ILVANKID-KN 160 (208)
T ss_dssp EEEEECTT-CC
T ss_pred EEEEECCC-cc
Confidence 99999888 53
No 31
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.45 E-value=0.36 Score=38.13 Aligned_cols=76 Identities=17% Similarity=0.050 Sum_probs=38.2
Q ss_pred eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659 22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG 98 (300)
..++|.. +.++||| |.-+...... .. ..+.|++++|+.+..+-+-++. ..+..+.....
T Consensus 45 ~~~~~~~~~~~i~Dt~-------G~~~~~~~~~-------~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 106 (189)
T 4dsu_A 45 VVIDGETCLLDILDTA-------GQEEYSAMRD-------QY----MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106 (189)
T ss_dssp EEETTEEEEEEEEECC-------CC---CTTHH-------HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred EEECCcEEEEEEEECC-------CcHHHHHHHH-------HH----HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 3466765 6679999 6433322111 11 1257999999999743222221 11222222221
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
. .-.-+|||+|.-|...
T Consensus 107 ~-~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 107 S-EDVPMVLVGNKCDLPS 123 (189)
T ss_dssp C-SCCCEEEEEECTTSSS
T ss_pred C-CCCcEEEEEECccCcc
Confidence 1 1234677888777543
No 32
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.40 E-value=0.77 Score=36.76 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=46.4
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..+.++||| |.-+.... ......+.|++|+|+.+..+-+-++ +...+..++....
T Consensus 61 ~~~~~~~~~~~Dt~-------G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~ 120 (189)
T 2x77_A 61 LQYKNISFEVWDLG-------GQTGVRPY-----------WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDE 120 (189)
T ss_dssp EEETTEEEEEEEEC-------CSSSSCCC-----------CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCST
T ss_pred EEECCEEEEEEECC-------CCHhHHHH-----------HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhh
Confidence 45678999999999 64332211 1223468999999999975544332 2344455544321
Q ss_pred --hcceEEEEEcCCCCCC
Q 036659 102 --FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 --~~y~IVlFT~gD~Le~ 117 (300)
-.-+|||+|--|-...
T Consensus 121 ~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 121 LRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp TTTCEEEEEEECTTSTTC
T ss_pred cCCCeEEEEEECCCCcCC
Confidence 2346778887775543
No 33
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.27 E-value=0.11 Score=47.15 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=51.8
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.+++..++++||| |+.. .....+.+.+......+-.+.+++++|+.... |+..++..++.+.. .-
T Consensus 52 ~~~~~~i~~iDTp-------G~~~--~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~ 116 (301)
T 1ega_A 52 TEGAYQAIYVDTP-------GLHM--EEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GK 116 (301)
T ss_dssp EETTEEEEEESSS-------SCCH--HHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SS
T ss_pred EECCeeEEEEECc-------CCCc--cchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cC
Confidence 4578899999999 7651 01123334454445556678999999999975 99988766555431 22
Q ss_pred cceEEEEEcCCCCC
Q 036659 103 DYMIVVFTGGDELE 116 (300)
Q Consensus 103 ~y~IVlFT~gD~Le 116 (300)
.-.|++.+.-|...
T Consensus 117 ~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 117 APVILAVNKVDNVQ 130 (301)
T ss_dssp SCEEEEEESTTTCC
T ss_pred CCEEEEEECcccCc
Confidence 34667777666543
No 34
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.18 E-value=0.12 Score=40.54 Aligned_cols=73 Identities=25% Similarity=0.236 Sum_probs=41.2
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK 99 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~ 99 (300)
..++| ..+.++||| |.-+.... .....++.|++++|+.+..+-+ ...+..+...+..
T Consensus 51 ~~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~ 109 (181)
T 3tw8_B 51 VEINGEKVKLQIWDTA-------GQERFRTI-----------TSTYYRGTHGVIVVYDVTSAES---FVNVKRWLHEINQ 109 (181)
T ss_dssp EEETTEEEEEEEEEET-------TGGGCSSC-----------CGGGGTTCSEEEEEEETTCHHH---HHHHHHHHHHHHH
T ss_pred EEECCEEEEEEEEcCC-------Cchhhhhh-----------HHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHH
Confidence 35677 578999999 53222111 1223468899999999974322 2223333333333
Q ss_pred hh-hcceEEEEEcCCCC
Q 036659 100 NV-FDYMIVVFTGGDEL 115 (300)
Q Consensus 100 ~i-~~y~IVlFT~gD~L 115 (300)
.. -...|||+|.-|..
T Consensus 110 ~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 110 NCDDVCRILVGNKNDDP 126 (181)
T ss_dssp HCTTSEEEEEEECTTCG
T ss_pred hCCCCCEEEEEECCCCc
Confidence 22 23457778877744
No 35
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.13 E-value=0.015 Score=51.88 Aligned_cols=147 Identities=10% Similarity=0.059 Sum_probs=78.8
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCCh--HHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGS--KFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA 88 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~--e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~ 88 (300)
++|...... ....+|..+.+|||| |..+..... ......+. ...+...+++++++|+... .+ +....
T Consensus 35 g~t~~~~~~-~~~~~~~~~~liDtp-------G~~~~~~~~~~~~~~e~i~-~~~~~~~~~d~ii~VvD~~-~~-~~~~~ 103 (274)
T 3i8s_A 35 GVTVERKEG-QFSTTDHQVTLVDLP-------GTYSLTTISSQTSLDEQIA-CHYILSGDADLLINVVDAS-NL-ERNLY 103 (274)
T ss_dssp TSSSEEEEE-EEECSSCEEEEEECC-------CCSCSCC----CCHHHHHH-HHHHHHTCCSEEEEEEEGG-GH-HHHHH
T ss_pred CeeEEEEEE-EEEeCCCceEEEECc-------CCCccccccccCCHHHHHH-HHHHhhcCCCEEEEEecCC-Ch-HHHHH
Confidence 444443333 245578899999999 887765211 11222222 2223356899999999987 32 22233
Q ss_pred HHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhc
Q 036659 89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLC 168 (300)
Q Consensus 89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C 168 (300)
.+..+..+ -.-+|||++--|..+..+ +. ..+.. +-+..
T Consensus 104 ~~~~l~~~-----~~p~ivv~NK~Dl~~~~~------~~----~~~~~---------------------------l~~~l 141 (274)
T 3i8s_A 104 LTLQLLEL-----GIPCIVALNMLDIAEKQN------IR----IEIDA---------------------------LSARL 141 (274)
T ss_dssp HHHHHHHH-----TCCEEEEEECHHHHHHTT------EE----ECHHH---------------------------HHHHH
T ss_pred HHHHHHhc-----CCCEEEEEECccchhhhh------HH----HHHHH---------------------------HHHhc
Confidence 33333322 245788888766443210 00 11222 33444
Q ss_pred CCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcC--CCCCChHHHHHH
Q 036659 169 DNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQND--GQPYTDDIFVEL 216 (300)
Q Consensus 169 ~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~Ng--G~~yt~e~f~e~ 216 (300)
|-.++....++ ...+.+|++.|.+.+.... -..|..++-..+
T Consensus 142 g~~~i~~SA~~------g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~ 185 (274)
T 3i8s_A 142 GCPVIPLVSTR------GRGIEALKLAIDRYKANENVELVHYAQPLLNEA 185 (274)
T ss_dssp TSCEEECCCGG------GHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHH
T ss_pred CCCEEEEEcCC------CCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHH
Confidence 55566555432 3688899988877665432 124666654443
No 36
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.12 E-value=0.22 Score=41.52 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=61.7
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK 99 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~ 99 (300)
..++|. .+.++||| |.-+.. ........+.|++|+|+.+..+-|-++. ...|...+-.
T Consensus 75 ~~~~~~~~~l~l~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~ 134 (214)
T 2j1l_A 75 LQVKGKPVHLHIWDTA-------GQDDYD-----------RLRPLFYPDASVLLLCFDVTSPNSFDNI--FNRWYPEVNH 134 (214)
T ss_dssp EEETTEEEEEEEEEC---------------------------------CEEEEEEEEETTCHHHHHHH--HHTHHHHHHH
T ss_pred EEECCEEEEEEEEECC-------Cchhhh-----------HHHHHHhccCCEEEEEEECcCHHHHHHH--HHHHHHHHHH
Confidence 345665 68899999 632211 1112234689999999998743222221 1122222211
Q ss_pred hh-hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCC-eEEEEeC
Q 036659 100 NV-FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDN-RCVLFDN 177 (300)
Q Consensus 100 ~i-~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~-R~~~FnN 177 (300)
.. -.-+|||.|--|-..+ ..+.+.+........ .+.-. ..+.+..+. .|+....
T Consensus 135 ~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v-------~~~~~---------------~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 135 FCKKVPIIVVGCKTDLRKD--KSLVNKLRRNGLEPV-------TYHRG---------------QEMARSVGAVAYLECSA 190 (214)
T ss_dssp HCSSCCEEEEEECGGGGSC--HHHHHHHHHTTCCCC-------CHHHH---------------HHHHHHTTCSEEEECBT
T ss_pred hCCCCCEEEEEEChhhhcc--chhhhhhcccccCcc-------cHHHH---------------HHHHHhcCCCEEEEecC
Confidence 11 1246777777775544 233333322000000 00000 014455565 6766665
Q ss_pred CCcchhhchHHHHHHHHHHHHHHHHcCC
Q 036659 178 KTKDEAKRTEQIWKLLSLVNSVAVQNDG 205 (300)
Q Consensus 178 k~~de~~~~~Qv~eLL~~Ve~mv~~NgG 205 (300)
++. ..|.+|+..|-..+.++.+
T Consensus 191 ~~g------~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 191 RLH------DNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTT------BSHHHHHHHHHHHHHHC--
T ss_pred CCC------CCHHHHHHHHHHHHHHhhc
Confidence 542 4788899888877776654
No 37
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.11 E-value=0.14 Score=45.31 Aligned_cols=131 Identities=14% Similarity=0.054 Sum_probs=72.7
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
++|...... ....++..+.++||| |..+.+..+. ...+.+-.. ...++|++++|+.+. .+. ..+
T Consensus 37 g~tv~~~~~-~~~~~~~~~~l~Dtp-------G~~~~~~~~~--~e~v~~~~~-~~~~~d~ii~V~D~t-~~~----~~~ 100 (258)
T 3a1s_A 37 GVTVEKKEG-VFTYKGYTINLIDLP-------GTYSLGYSSI--DEKIARDYL-LKGDADLVILVADSV-NPE----QSL 100 (258)
T ss_dssp TSCCEEEEE-EEEETTEEEEEEECC-------CCSSCCSSSH--HHHHHHHHH-HHSCCSEEEEEEETT-SCH----HHH
T ss_pred CceEEEEEE-EEEECCeEEEEEECC-------CcCccCCCCH--HHHHHHHHH-hhcCCCEEEEEeCCC-chh----hHH
Confidence 444443332 234568999999999 8876654321 112222221 126899999999987 442 223
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDN 170 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~ 170 (300)
..+..+... -.-+||+.+--|..+..+ + ....+. +.+..|-
T Consensus 101 ~~~~~l~~~--~~pvilv~NK~Dl~~~~~------i----~~~~~~---------------------------l~~~lg~ 141 (258)
T 3a1s_A 101 YLLLEILEM--EKKVILAMTAIDEAKKTG------M----KIDRYE---------------------------LQKHLGI 141 (258)
T ss_dssp HHHHHHHTT--TCCEEEEEECHHHHHHTT------C----CBCHHH---------------------------HHHHHCS
T ss_pred HHHHHHHhc--CCCEEEEEECcCCCCccc------h----HHHHHH---------------------------HHHHcCC
Confidence 344444332 235778888666432211 1 112233 4445555
Q ss_pred eEEEEeCCCcchhhchHHHHHHHHHHHHHHHH
Q 036659 171 RCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQ 202 (300)
Q Consensus 171 R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~ 202 (300)
.|+...-++ ...+.+|++.|...+..
T Consensus 142 ~vi~~SA~~------g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 142 PVVFTSSVT------GEGLEELKEKIVEYAQK 167 (258)
T ss_dssp CEEECCTTT------CTTHHHHHHHHHHHHHS
T ss_pred CEEEEEeeC------CcCHHHHHHHHHHHhhc
Confidence 565555443 24788899888887653
No 38
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.09 E-value=0.6 Score=36.19 Aligned_cols=76 Identities=12% Similarity=0.023 Sum_probs=45.9
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN- 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~- 100 (300)
..+++..+.++||| |.-+.. ........+.|++|+|+.+..+-+-++ ....+..++...
T Consensus 46 ~~~~~~~~~~~Dt~-------G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~ 105 (171)
T 1upt_A 46 VTYKNLKFQVWDLG-------GLTSIR-----------PYWRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEE 105 (171)
T ss_dssp EEETTEEEEEEEEC-------CCGGGG-----------GGGGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGG
T ss_pred EEECCEEEEEEECC-------CChhhh-----------HHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchh
Confidence 45778999999999 643211 112234468999999999975533322 223444444332
Q ss_pred -hhcceEEEEEcCCCCCC
Q 036659 101 -VFDYMIVVFTGGDELED 117 (300)
Q Consensus 101 -i~~y~IVlFT~gD~Le~ 117 (300)
.-..++||+|--|-...
T Consensus 106 ~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 106 LRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GTTCEEEEEEECTTSTTC
T ss_pred hCCCEEEEEEECCCCcCC
Confidence 12356788887775543
No 39
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=94.93 E-value=0.032 Score=53.92 Aligned_cols=128 Identities=12% Similarity=0.114 Sum_probs=74.8
Q ss_pred eeCCE-EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 23 RIQVV-LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 23 ~~~Gr-~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
.+.+. .+++|||| |..|.........+....+ ..+.+++|+|+.+ .+++.+...+..+...
T Consensus 78 ~~~~~~~l~liDTp-------G~~d~~~l~~~~~~~~~~~----l~~aD~vllVvD~--~~~~~~~~~l~~l~~~----- 139 (423)
T 3qq5_A 78 ELHPIGPVTLVDTP-------GLDDVGELGRLRVEKARRV----FYRADCGILVTDS--APTPYEDDVVNLFKEM----- 139 (423)
T ss_dssp EETTTEEEEEEECS-------STTCCCTTCCCCHHHHHHH----HTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----
T ss_pred EECCCCeEEEEECc-------CCCcccchhHHHHHHHHHH----HhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----
Confidence 44444 89999999 7766543211111112222 2478999999987 6677777777777665
Q ss_pred hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcc
Q 036659 102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKD 181 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~d 181 (300)
-...|||++--|..... .. +.. +. +.+.++-.|+..+.++.
T Consensus 140 ~~piIvV~NK~Dl~~~~--~~-~~~--------~~---------------------------l~~~~g~~v~~vSAktg- 180 (423)
T 3qq5_A 140 EIPFVVVVNKIDVLGEK--AE-ELK--------GL---------------------------YESRYEAKVLLVSALQK- 180 (423)
T ss_dssp TCCEEEECCCCTTTTCC--CT-HHH--------HH---------------------------SSCCTTCCCCCCSSCCT-
T ss_pred CCCEEEEEeCcCCCCcc--HH-HHH--------HH---------------------------HHHHcCCCEEEEECCCC-
Confidence 23567777777765442 11 111 11 22333445555555542
Q ss_pred hhhchHHHHHHHHHHHHHHHHcCCCCCChHH
Q 036659 182 EAKRTEQIWKLLSLVNSVAVQNDGQPYTDDI 212 (300)
Q Consensus 182 e~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~ 212 (300)
..+.+|++.|...+.+....++..++
T Consensus 181 -----~gI~eL~~~L~~~l~~~~e~~l~~dL 206 (423)
T 3qq5_A 181 -----KGFDDIGKTISEILPGDEEIPYLGDL 206 (423)
T ss_dssp -----TSTTTHHHHHHHHSCCCCCCCSCSCC
T ss_pred -----CCHHHHHHHHHHhhhhhccCcchhhc
Confidence 36777888888888666444544433
No 40
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.93 E-value=0.14 Score=40.40 Aligned_cols=71 Identities=11% Similarity=-0.024 Sum_probs=39.1
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~ 105 (300)
..+.++||| |.-. ... .......+.|++|+|+.+..+.|-++ ...+..+...... .-..+
T Consensus 70 ~~~~l~Dt~-------G~~~-------~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi 130 (195)
T 3bc1_A 70 IHLQLWDTA-------GLER-------FRS----LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDI 130 (195)
T ss_dssp EEEEEEEEC-------CSGG-------GHH----HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCE
T ss_pred EEEEEEeCC-------CcHH-------HHH----HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCE
Confidence 589999999 7521 111 12223468899999999874433332 1222222222110 12357
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
|||+|.-|...
T Consensus 131 ilv~nK~Dl~~ 141 (195)
T 3bc1_A 131 VLCGNKSDLED 141 (195)
T ss_dssp EEEEECTTCGG
T ss_pred EEEEECccccc
Confidence 88888877543
No 41
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.76 E-value=0.42 Score=38.24 Aligned_cols=76 Identities=16% Similarity=0.030 Sum_probs=38.9
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG 98 (300)
..++|. .+.++||| |.-+.. ........+.+++++|+.+..+-+-++. ..+..+.....
T Consensus 62 ~~~~~~~~~~~l~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 123 (190)
T 3con_A 62 VVIDGETCLLDILDTA-------GQEEYS-----------AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD 123 (190)
T ss_dssp EEETTEEEEEEEEECC-------C----------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCEEEEEEEEECC-------ChHHHH-----------HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC
Confidence 345665 48899999 632211 1112234688999999998744332222 12222322221
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
. .-.-++||.|.-|...
T Consensus 124 ~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 124 S-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp C-SCCCEEEEEECTTCSC
T ss_pred C-CCCeEEEEEECCcCCc
Confidence 1 1235788888888554
No 42
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=94.70 E-value=0.22 Score=48.33 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=50.6
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
++|...... ...++++.+++|||| |. +...+.+... ..+.+++|||+.+......+....+
T Consensus 58 GiTi~~~~~-~~~~~~~~i~iiDtP-------Gh-------~~~~~~~~~~----~~~aD~~ilVvda~~g~~~qt~e~l 118 (482)
T 1wb1_A 58 GITIDIGFS-AFKLENYRITLVDAP-------GH-------ADLIRAVVSA----ADIIDLALIVVDAKEGPKTQTGEHM 118 (482)
T ss_dssp ------CCC-EEEETTEEEEECCCS-------SH-------HHHHHHHHHH----TTSCCEEEEEEETTTCSCHHHHHHH
T ss_pred ccEEecceE-EEEECCEEEEEEECC-------Ch-------HHHHHHHHHH----HhhCCEEEEEEecCCCccHHHHHHH
Confidence 445444333 345689999999999 74 2233444433 3578999999999766777766666
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
..+.. +| ..+ ||+++--|...
T Consensus 119 ~~~~~-~~---ip~-IvviNK~Dl~~ 139 (482)
T 1wb1_A 119 LILDH-FN---IPI-IVVITKSDNAG 139 (482)
T ss_dssp HHHHH-TT---CCB-CEEEECTTSSC
T ss_pred HHHHH-cC---CCE-EEEEECCCccc
Confidence 65433 44 344 88888777553
No 43
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.68 E-value=0.36 Score=37.45 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=38.8
Q ss_pred eCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchh
Q 036659 24 IQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKN 100 (300)
Q Consensus 24 ~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~ 100 (300)
++|. .+.++||| |.-+. ........++.|++++|+.+..+-|-++ ...+..+....+.+
T Consensus 50 ~~~~~~~l~i~Dt~-------G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 111 (170)
T 1z08_A 50 IGGKRVNLAIWDTA-------GQERF-----------HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE 111 (170)
T ss_dssp SSSCEEEEEEEECC-------CC------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG
T ss_pred ECCEEEEEEEEECC-------CcHhh-----------hhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 4454 57788999 63221 1112334568899999999874333222 12223333333322
Q ss_pred hhcceEEEEEcCCCCC
Q 036659 101 VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le 116 (300)
..++||.|.-|-..
T Consensus 112 --~piilv~nK~Dl~~ 125 (170)
T 1z08_A 112 --ICLCIVGNKIDLEK 125 (170)
T ss_dssp --SEEEEEEECGGGGG
T ss_pred --CeEEEEEECccccc
Confidence 34677888777543
No 44
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.58 E-value=0.019 Score=54.54 Aligned_cols=91 Identities=12% Similarity=0.029 Sum_probs=49.6
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.|+|...... ...++|+.+.++||| |+...+.+ +.+++..-...+-.+.|++|+|+.+...+|..+...
T Consensus 35 ~g~T~d~~~~-~~~~~~~~~~l~DT~-------G~~~~~~~---~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~ 103 (436)
T 2hjg_A 35 PGVTRDRIYS-SAEWLNYDFNLIDTG-------GIDIGDEP---FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV 103 (436)
T ss_dssp ------CEEE-ECTTCSSCCEEEC----------------C---HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH
T ss_pred CCCccceEEE-EEEECCceEEEEECC-------CCCCcchh---HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH
Confidence 3455444333 345788999999999 76432211 334444433444567899999999988899888665
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
.+.+.. .-..+|||.+--|...
T Consensus 104 ~~~l~~-----~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 104 AKILYR-----TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HHHHTT-----CCSCEEEEEECCCC--
T ss_pred HHHHHH-----cCCCEEEEEECccCcc
Confidence 554432 2346788888777553
No 45
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.54 E-value=0.12 Score=48.12 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=32.9
Q ss_pred cCCCCCeEEEEEEeC-CCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 64 MAKDGIHAVLVVFSV-RSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 64 l~~pGpHA~LLV~~v-~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
+....+|++|+++.. +..|++-+...+..+ +. -..+|||++-.|.+..
T Consensus 141 ~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 141 IIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLTL 189 (361)
T ss_dssp CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH
T ss_pred ccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCCCH
Confidence 345678999988875 558888876555443 32 2358999999897654
No 46
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.53 E-value=0.17 Score=46.59 Aligned_cols=79 Identities=19% Similarity=0.111 Sum_probs=46.1
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCCh-HHHHHHHHHhhccCCCCCeEEEEEEeCCCC--CCHHH-HHHHHHHHHHhch
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGS-KFVGKEIVTCIGMAKDGIHAVLVVFSVRSR--FSQEE-EAALHSWQTLFGK 99 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~-e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r--fT~EE-~~al~~lq~lFG~ 99 (300)
.+|..+.++||| |+.+..... ..+.... +.......|++|+|+.+.+. |+.++ ...+..+...++
T Consensus 211 ~~~~~~~l~Dt~-------G~~~~~~~~~~~~~~~~---~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~- 279 (357)
T 2e87_A 211 DGYFRYQIIDTP-------GLLDRPISERNEIEKQA---ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK- 279 (357)
T ss_dssp ETTEEEEEEECT-------TTSSSCSTTSCHHHHHH---HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-
T ss_pred ecCceEEEEeCC-------CccccchhhhhHHHHHH---HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-
Confidence 467889999999 765543221 1122221 21123468999999997643 35444 566677777775
Q ss_pred hhhcceEEEEEcCCCC
Q 036659 100 NVFDYMIVVFTGGDEL 115 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~L 115 (300)
-.-+|||+|--|-.
T Consensus 280 --~~piilV~NK~Dl~ 293 (357)
T 2e87_A 280 --DLPFLVVINKIDVA 293 (357)
T ss_dssp --TSCEEEEECCTTTC
T ss_pred --CCCEEEEEECcccC
Confidence 23455666555543
No 47
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.52 E-value=0.079 Score=42.87 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=47.2
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|..+.++||| |+.+.....+. ..+.+... ...+.|++|+|+.+..+.|.++...+..+......+
T Consensus 47 ~~~~~~~~~l~Dt~-------G~~~~~~~~~~--~~~~~~~~-~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~- 115 (172)
T 2gj8_A 47 IHIDGMPLHIIDTA-------GLREASDEVER--IGIERAWQ-EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK- 115 (172)
T ss_dssp EEETTEEEEEEECC-------CCSCCSSHHHH--HHHHHHHH-HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT-
T ss_pred EEECCeEEEEEECC-------CcccchhHHHH--HHHHHHHH-HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC-
Confidence 56789999999999 76543221111 11222221 135889999999998777766555555454433221
Q ss_pred hcceEEEEEcCC
Q 036659 102 FDYMIVVFTGGD 113 (300)
Q Consensus 102 ~~y~IVlFT~gD 113 (300)
.-+|||.+--|
T Consensus 116 -~p~ilv~NK~D 126 (172)
T 2gj8_A 116 -LPITVVRNKAD 126 (172)
T ss_dssp -CCEEEEEECHH
T ss_pred -CCEEEEEECcc
Confidence 23566776545
No 48
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.24 Score=38.93 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=40.2
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~ 99 (300)
.++|. .+.++||| |.-+.. ........+.|++++|+.+..+.+-++ ...+..+.....
T Consensus 54 ~~~~~~~~~~~~Dt~-------G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~- 114 (180)
T 2g6b_A 54 DVDGVKVKLQMWDTA-------GQERFR-----------SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ- 114 (180)
T ss_dssp EETTEEEEEEEEECC-------CC-------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-
T ss_pred EECCEEEEEEEEeCC-------CcHHHH-----------HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-
Confidence 45665 78899999 632111 112223457899999999974333222 122233333322
Q ss_pred hhhcceEEEEEcCCCCCC
Q 036659 100 NVFDYMIVVFTGGDELED 117 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~Le~ 117 (300)
.-...+||+|.-|-...
T Consensus 115 -~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 115 -HDVALMLLGNKVDSAHE 131 (180)
T ss_dssp -TTCEEEEEEECCSTTSC
T ss_pred -CCCcEEEEEECcccCcc
Confidence 12356788888786543
No 49
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.40 E-value=0.56 Score=35.70 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=39.7
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~ 99 (300)
.++|. .+.++||| |.-+.. .+.. .++ .+.|++++|+.+..+-+-++ ...+..+......
T Consensus 45 ~~~~~~~~~~~~D~~-------G~~~~~----~~~~---~~~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 106 (166)
T 2ce2_X 45 VIDGETCLLDILDTA-------GQEEYS----AMRD---QYM----RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106 (166)
T ss_dssp EETTEEEEEEEEECC-------CCSSCC----HHHH---HHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC
T ss_pred EECCEEEEEEEEECC-------Cchhhh----HHHH---Hhh----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 45554 47889999 744322 1111 112 25789999999874322222 1222223222211
Q ss_pred hhhcceEEEEEcCCCCC
Q 036659 100 NVFDYMIVVFTGGDELE 116 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~Le 116 (300)
.-..++||.|.-|...
T Consensus 107 -~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 107 -DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp -SCCCEEEEEECTTCSC
T ss_pred -CCCcEEEEEEchhhhh
Confidence 1245788889888554
No 50
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.36 E-value=0.071 Score=42.65 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=65.1
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|..+.++||| |..+..... ....+.... +...+++++++|+... .| + ....++..+...
T Consensus 49 ~~~~~~~~~l~Dt~-------G~~~~~~~~--~~~~~~~~~-~~~~~~~~~i~v~d~~-~~--~--~~~~~~~~~~~~-- 111 (188)
T 2wjg_A 49 FEYNGEKFKVVDLP-------GVYSLTANS--IDEIIARDY-IINEKPDLVVNIVDAT-AL--E--RNLYLTLQLMEM-- 111 (188)
T ss_dssp EEETTEEEEEEECC-------CCSCCSSSS--HHHHHHHHH-HHHHCCSEEEEEEEGG-GH--H--HHHHHHHHHHTT--
T ss_pred EEeCCcEEEEEECC-------CcCcccccc--HHHHHHHHH-HhccCCCEEEEEecch-hH--H--HHHHHHHHHHhc--
Confidence 45779999999999 776553221 111222211 1113578999999876 33 1 122333333221
Q ss_pred hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcc
Q 036659 102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKD 181 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~d 181 (300)
-.-+|||++.-|..... . + ...++. +.+.++-.|+....++
T Consensus 112 ~~piilv~nK~Dl~~~~--~----~----~~~~~~---------------------------~~~~~~~~~~~~Sa~~-- 152 (188)
T 2wjg_A 112 GANLLLALNKMDLAKSL--G----I----EIDVDK---------------------------LEKILGVKVVPLSAAK-- 152 (188)
T ss_dssp TCCEEEEEECHHHHHHT--T----C----CCCHHH---------------------------HHHHHTSCEEECBGGG--
T ss_pred CCCEEEEEEhhhccccc--c----c----hHHHHH---------------------------HHHHhCCCeEEEEecC--
Confidence 12345555544422110 0 1 122333 5555566676666443
Q ss_pred hhhchHHHHHHHHHHHHHHHHcC
Q 036659 182 EAKRTEQIWKLLSLVNSVAVQND 204 (300)
Q Consensus 182 e~~~~~Qv~eLL~~Ve~mv~~Ng 204 (300)
...|.+|+..|-..+.+..
T Consensus 153 ----~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 153 ----KMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp ----TBSHHHHHHHHHHHHTTC-
T ss_pred ----CCCHHHHHHHHHHHHHhcc
Confidence 2478899998888886654
No 51
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.33 E-value=0.32 Score=45.57 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=44.8
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~ 103 (300)
.++.+++|||| |- +...+.....+ .+.+++|||+.+...+ ..+....+..+ ...|. .
T Consensus 73 ~~~~~~iiDtP-------Gh-------~~~~~~~~~~~----~~~D~~ilVvda~~~~~~~qt~~~~~~~-~~~~~---~ 130 (403)
T 3sjy_A 73 FLRRISFIDAP-------GH-------EVLMATMLSGA----ALMDGAILVVAANEPFPQPQTREHFVAL-GIIGV---K 130 (403)
T ss_dssp EEEEEEEEECC-------CC-------GGGHHHHHHHH----TTCSEEEEEEETTSCSSCHHHHHHHHHH-HHHTC---C
T ss_pred ccceEEEEECC-------Cc-------HHHHHHHHHHH----hhCCEEEEEEECCCCCCcHHHHHHHHHH-HHcCC---C
Confidence 34899999999 62 22234444444 4789999999998665 33334444333 33343 4
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
..||+++--|...
T Consensus 131 ~iivviNK~Dl~~ 143 (403)
T 3sjy_A 131 NLIIVQNKVDVVS 143 (403)
T ss_dssp CEEEEEECGGGSC
T ss_pred CEEEEEECccccc
Confidence 7888888888654
No 52
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=94.30 E-value=2 Score=42.07 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=48.0
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccC-CCCCCh-----HHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLF-DFSAGS-----KFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQ 94 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glf-d~~~~~-----e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq 94 (300)
...++|..+.++||| |+- ++.... ......+ .+.+++|+|+.+....+.++...++.+
T Consensus 285 ~i~~~g~~~~l~DTa-------G~~~~~~~~ve~~gi~~~~~~~--------~~aD~vl~VvD~s~~~s~~~~~il~~l- 348 (482)
T 1xzp_A 285 EIVIRGILFRIVDTA-------GVRSETNDLVERLGIERTLQEI--------EKADIVLFVLDASSPLDEEDRKILERI- 348 (482)
T ss_dssp EEEETTEEEEEEESS-------CCCSSCCTTCCCCCHHHHHHHH--------HHCSEEEEEEETTSCCCHHHHHHHHHH-
T ss_pred EEecCCeEEEEEECC-------CccccchhhHHHHHHHHHHHHh--------hcccEEEEEecCCCCCCHHHHHHHHHh-
Confidence 456789999999999 765 433211 1122222 357899999999878888776554332
Q ss_pred HHhchhhhcceEEEEEcCCCC
Q 036659 95 TLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 95 ~lFG~~i~~y~IVlFT~gD~L 115 (300)
. -..+|||++--|-.
T Consensus 349 ---~---~~piivV~NK~DL~ 363 (482)
T 1xzp_A 349 ---K---NKRYLVVINKVDVV 363 (482)
T ss_dssp ---T---TSSEEEEEEECSSC
T ss_pred ---c---CCCEEEEEECcccc
Confidence 2 24578888877754
No 53
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.28 E-value=0.43 Score=38.40 Aligned_cols=72 Identities=19% Similarity=0.019 Sum_probs=38.1
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch-hhhcc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK-NVFDY 104 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~-~i~~y 104 (300)
..+.++||| |.- +..........+.|++|+|+.+..+-|-++ ...+..+....+. ..-..
T Consensus 73 ~~~~l~Dt~-------G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 134 (208)
T 2yc2_C 73 VELFLLDTA-------GSD-----------LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134 (208)
T ss_dssp EEEEEEETT-------TTH-----------HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE
T ss_pred EEEEEEECC-------CcH-----------HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 489999999 752 112234445678999999999974333222 1222223222220 01235
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
+|||+|.-|-..
T Consensus 135 iilv~nK~Dl~~ 146 (208)
T 2yc2_C 135 AVLVANKTDLPP 146 (208)
T ss_dssp EEEEEECC----
T ss_pred EEEEEECcccch
Confidence 677888777544
No 54
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.19 E-value=1.4 Score=34.79 Aligned_cols=124 Identities=17% Similarity=0.063 Sum_probs=64.0
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG 98 (300)
..++| ..+.++||| |.-+...- ......+.|++|+|+.+..+-+-+.. ..+..+...++
T Consensus 47 ~~~~~~~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 108 (181)
T 3t5g_A 47 ITVNGQEYHLQLVDTA-------GQDEYSIF-----------PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108 (181)
T ss_dssp EEETTEEEEEEEEECC-------CCCTTCCC-----------CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-
T ss_pred EEECCEEEEEEEEeCC-------CchhhhHH-----------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 45667 456899999 64333211 11234578999999999733222221 11122222222
Q ss_pred hhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCC
Q 036659 99 KNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNK 178 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk 178 (300)
.. -.-.|||.|--|-......+.+ .++. +.+..+-.|+...-+
T Consensus 109 ~~-~~p~ilv~nK~Dl~~~~~~~~~---------~~~~---------------------------~~~~~~~~~~~~Sa~ 151 (181)
T 3t5g_A 109 KV-QIPIMLVGNKKDLHMERVISYE---------EGKA---------------------------LAESWNAAFLESSAK 151 (181)
T ss_dssp ----CCEEEEEECTTCTTTCCSCHH---------HHHH---------------------------HHHHTTCEEEECCTT
T ss_pred CC-CCCEEEEEECccchhcceecHH---------HHHH---------------------------HHHHhCCcEEEEecC
Confidence 11 1246777787774433211111 1222 444445556555544
Q ss_pred CcchhhchHHHHHHHHHHHHHHHHcCCC
Q 036659 179 TKDEAKRTEQIWKLLSLVNSVAVQNDGQ 206 (300)
Q Consensus 179 ~~de~~~~~Qv~eLL~~Ve~mv~~NgG~ 206 (300)
+ ...|.+|+..+-..+....|.
T Consensus 152 ~------~~~v~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 152 E------NQTAVDVFRRIILEAEKMDGA 173 (181)
T ss_dssp S------HHHHHHHHHHHHHHHHTC---
T ss_pred C------CCCHHHHHHHHHHHHHHhcCC
Confidence 3 368999998888877766554
No 55
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=1.6 Score=34.86 Aligned_cols=76 Identities=13% Similarity=0.003 Sum_probs=43.2
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
+..+++..+.++||| |.-+..... .. ...+.|++|+|+.+..+-|-++ +...+..+....
T Consensus 54 ~~~~~~~~~~i~Dt~-------G~~~~~~~~-------~~----~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~ 113 (187)
T 1zj6_A 54 EIVINNTRFLMWDIG-------GQESLRSSW-------NT----YYTNTEFVIVVVDSTDRERISV--TREELYKMLAHE 113 (187)
T ss_dssp EEEETTEEEEEEECC-------C----CGGG-------HH----HHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSG
T ss_pred EEEECCEEEEEEECC-------CCHhHHHHH-------HH----HhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhch
Confidence 345788999999999 753322111 11 1257899999999985544332 223444443321
Q ss_pred --hhcceEEEEEcCCCCC
Q 036659 101 --VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 --i~~y~IVlFT~gD~Le 116 (300)
.-...|||.|--|-..
T Consensus 114 ~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 114 DLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp GGTTCEEEEEEECTTSTT
T ss_pred hhCCCeEEEEEECCCCcC
Confidence 1235677777777543
No 56
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.06 E-value=0.77 Score=35.45 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=43.4
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...++..+.++||| |.-+. .. + .....++.|++++|+.+..+-|-+ .....+..+.....
T Consensus 39 ~~~~~~~~~i~Dt~-------G~~~~-------~~-~---~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~ 98 (164)
T 1r8s_A 39 VEYKNISFTVWDVG-------GQDKI-------RP-L---WRHYFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDE 98 (164)
T ss_dssp EECSSCEEEEEECC-------CCGGG-------HH-H---HHHHTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGG
T ss_pred EEECCEEEEEEEcC-------CChhh-------HH-H---HHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchh
Confidence 34567899999999 75221 11 1 112346899999999997543322 23345555544321
Q ss_pred --hcceEEEEEcCCCCC
Q 036659 102 --FDYMIVVFTGGDELE 116 (300)
Q Consensus 102 --~~y~IVlFT~gD~Le 116 (300)
-..+|||.|--|-..
T Consensus 99 ~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 99 LRDAVLLVFANKQDLPN 115 (164)
T ss_dssp GTTCEEEEEEECTTSTT
T ss_pred hcCCeEEEEEECcCCcC
Confidence 124667777666443
No 57
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.00 E-value=0.074 Score=41.29 Aligned_cols=70 Identities=14% Similarity=0.021 Sum_probs=36.4
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y~ 105 (300)
..+.++||| |.-+... + .. ....+.|++++|+.+..+-+-++. ..+..+...-.+ ---.
T Consensus 55 ~~~~~~Dt~-------G~~~~~~----~---~~----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~i 114 (170)
T 1z0j_A 55 HKFLIWDTA-------GLERFRA----L---AP----MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVV 114 (170)
T ss_dssp EEEEEEEEC-------CSGGGGG----G---TH----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEE
T ss_pred EEEEEEcCC-------Cchhhhc----c---cH----hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcE
Confidence 578999999 7532111 0 11 112477999999998744333321 222333322111 1235
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
+||.|.-|-..
T Consensus 115 ilv~nK~Dl~~ 125 (170)
T 1z0j_A 115 AIAGNKCDLTD 125 (170)
T ss_dssp EEEEECTTCGG
T ss_pred EEEEECCcccc
Confidence 56667777543
No 58
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.00 E-value=0.92 Score=36.39 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=38.2
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--hc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--FD 103 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~~ 103 (300)
+..+.++||| |.-+.... ......+.|++|+|+.+..+-+-+ .+..+...+-... -.
T Consensus 70 ~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~ 128 (189)
T 2gf9_A 70 RIKLQIWDTA-------GQERYRTI-----------TTAYYRGAMGFLLMYDIANQESFA---AVQDWATQIKTYSWDNA 128 (189)
T ss_dssp EEEEEEEECC-------SCCSSCCS-----------GGGGGTTCSEEEEEEETTCHHHHH---THHHHHHHHHHHSCTTC
T ss_pred EEEEEEEeCC-------CcHHHhhh-----------HHHhccCCCEEEEEEECCCHHHHH---HHHHHHHHHHHhcCCCC
Confidence 3478999999 64332211 122345889999999987432222 2222222221111 23
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
.+|||.|--|-..
T Consensus 129 piilv~nK~Dl~~ 141 (189)
T 2gf9_A 129 QVILVGNKCDLED 141 (189)
T ss_dssp EEEEEEECTTCGG
T ss_pred CEEEEEECccccc
Confidence 4678888777543
No 59
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.93 E-value=0.32 Score=39.97 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=47.1
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh----
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV---- 101 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i---- 101 (300)
+..+.++||| |..+ ....+..- ..++.|++|+|+.+. .+........+.|..++....
T Consensus 53 ~~~~~i~Dt~-------G~~~-------~~~~~~~~---~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (214)
T 2fh5_B 53 GNSLTLIDLP-------GHES-------LRFQLLDR---FKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKN 114 (214)
T ss_dssp CCEEEEEECC-------CCHH-------HHHHHHHH---HGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred ccEEEEEECC-------CChh-------HHHHHHHH---HHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhccc
Confidence 6789999999 7532 22212221 246899999999987 554445666777777765421
Q ss_pred hcceEEEEEcCCCCCC
Q 036659 102 FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~ 117 (300)
-..+|||.|--|-...
T Consensus 115 ~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 115 SPSLLIACNKQDIAMA 130 (214)
T ss_dssp CCEEEEEEECTTSTTC
T ss_pred CCCEEEEEECCCCCCc
Confidence 2356777777775543
No 60
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.87 E-value=0.85 Score=37.12 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=40.9
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG 98 (300)
..++|. .+.++||| |.-+.... ......+.|++|+|+.+..+.|-++. ..+..+....+
T Consensus 50 ~~~~~~~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~ 111 (206)
T 2bcg_Y 50 VELDGKTVKLQIWDTA-------GQERFRTI-----------TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 111 (206)
T ss_dssp EEETTEEEEEEEECCT-------TTTTTTCC-----------CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC
T ss_pred EEECCEEEEEEEEeCC-------ChHHHHHH-----------HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence 345664 79999999 64332211 11234578999999999743332221 11222222222
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
. -...|||+|.-|...
T Consensus 112 ~--~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 112 S--TVLKLLVGNKCDLKD 127 (206)
T ss_dssp T--TCEEEEEEECTTCTT
T ss_pred C--CCCEEEEEECCCCcc
Confidence 2 234577788777544
No 61
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.87 E-value=0.21 Score=41.17 Aligned_cols=123 Identities=12% Similarity=0.079 Sum_probs=68.2
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y~ 105 (300)
..+.++||| |.-+....... ...+.|++|+|+.+..+.|.++. ..+..+....+.+ ..+
T Consensus 61 ~~~~l~Dt~-------G~~~~~~~~~~-----------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi 120 (218)
T 4djt_A 61 IKFNVWDTA-------GQEKKAVLKDV-----------YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--API 120 (218)
T ss_dssp EEEEEEEEC-------SGGGTSCCCHH-----------HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCE
T ss_pred EEEEEEecC-------CchhhchHHHH-----------HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCE
Confidence 579999999 64333221111 13478999999999855444332 2223343333322 357
Q ss_pred EEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchhhc
Q 036659 106 IVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKR 185 (300)
Q Consensus 106 IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~~~ 185 (300)
|||.|--|-......+.+ ..+. +....+-.|+...-++.
T Consensus 121 ilv~nK~Dl~~~~~~~~~---------~~~~---------------------------~~~~~~~~~~~~Sa~~g----- 159 (218)
T 4djt_A 121 VVCANKIDIKNRQKISKK---------LVME---------------------------VLKGKNYEYFEISAKTA----- 159 (218)
T ss_dssp EEEEECTTCC----CCHH---------HHHH---------------------------HTTTCCCEEEEEBTTTT-----
T ss_pred EEEEECCCCccccccCHH---------HHHH---------------------------HHHHcCCcEEEEecCCC-----
Confidence 788887774432111111 1111 33334446766666543
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCChH
Q 036659 186 TEQIWKLLSLVNSVAVQNDGQPYTDD 211 (300)
Q Consensus 186 ~~Qv~eLL~~Ve~mv~~NgG~~yt~e 211 (300)
..|.+|+..+-..+.++....+++.
T Consensus 160 -~gv~~l~~~l~~~~~~~~~~~~~~~ 184 (218)
T 4djt_A 160 -HNFGLPFLHLARIFTGRPDLIFVSN 184 (218)
T ss_dssp -BTTTHHHHHHHHHHHCCTTCCBCSC
T ss_pred -CCHHHHHHHHHHHHhcccccccccc
Confidence 3678888888888877766555543
No 62
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.83 E-value=1.9 Score=33.89 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=43.4
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN- 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~- 100 (300)
..+++..+.++||| |..+.... ......+.|++++|+.+..+-+-++ ....+..+....
T Consensus 57 ~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~ 116 (183)
T 1moz_A 57 LSYKNLKLNVWDLG-------GQTSIRPY-----------WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEE 116 (183)
T ss_dssp EEETTEEEEEEEEC-----------CCTT-----------GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSST
T ss_pred EEECCEEEEEEECC-------CCHhHHHH-----------HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChh
Confidence 45678999999999 76443221 1223468999999999975544332 233444444321
Q ss_pred -hhcceEEEEEcCCCCC
Q 036659 101 -VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 -i~~y~IVlFT~gD~Le 116 (300)
.-.-.|||.|--|-..
T Consensus 117 ~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 117 LQDAALLVFANKQDQPG 133 (183)
T ss_dssp TSSCEEEEEEECTTSTT
T ss_pred hCCCeEEEEEECCCCCC
Confidence 1234677777777443
No 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.78 E-value=0.29 Score=38.81 Aligned_cols=71 Identities=6% Similarity=0.042 Sum_probs=41.2
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch---hhh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK---NVF 102 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~---~i~ 102 (300)
+..+.++||| |.-+... +. .....+.|++|+|+.+...-+.+....++.+...+-. ...
T Consensus 73 ~~~~~i~Dt~-------G~~~~~~--------~~---~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~ 134 (198)
T 3t1o_A 73 KTRFHLYTVP-------GQVFYNA--------SR---KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134 (198)
T ss_dssp EEEEEEEECC-------SCCSCSH--------HH---HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred ceEEEEEeCC-------ChHHHHH--------HH---HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccC
Confidence 4578999999 7433221 11 1124588999999999745555555555555443322 112
Q ss_pred -cceEEEEEcCCC
Q 036659 103 -DYMIVVFTGGDE 114 (300)
Q Consensus 103 -~y~IVlFT~gD~ 114 (300)
.-.|||.+--|-
T Consensus 135 ~~piilv~NK~Dl 147 (198)
T 3t1o_A 135 DVPIVIQVNKRDL 147 (198)
T ss_dssp SSCEEEEEECTTS
T ss_pred CCCEEEEEEchhc
Confidence 245666666663
No 64
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.75 E-value=1.3 Score=35.36 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=40.6
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG 98 (300)
..++| ..+.++||| |.-..... ...+ ..+.|++++|+.+..+-+-++ ...+..+.....
T Consensus 58 ~~~~~~~~~~~i~Dt~-------G~~~~~~~-------~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 119 (196)
T 3tkl_A 58 IELDGKTIKLQIWDTA-------GQERFRTI-------TSSY----YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 119 (196)
T ss_dssp EEETTEEEEEEEEEEC-------CSGGGCTT-------HHHH----HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC
T ss_pred EEECCEEEEEEEEECC-------CcHhhhhh-------HHHH----HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence 45666 468899999 63222111 1112 257899999999874332222 122222323222
Q ss_pred hhhhcceEEEEEcCCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le~ 117 (300)
. -..+|||.|.-|-...
T Consensus 120 ~--~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 120 E--NVNKLLVGNKCDLTTK 136 (196)
T ss_dssp T--TCEEEEEEECTTCTTT
T ss_pred C--CCCEEEEEECcccccc
Confidence 2 2246777787775443
No 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.75 E-value=0.61 Score=36.94 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=35.0
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
.++| ..+.++||| |.-+.. ........+.|++|+|+.+..+.|-+ .+..+...+-..
T Consensus 51 ~~~~~~~~~~l~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~ 109 (183)
T 2fu5_C 51 ELDGKRIKLQIWDTA-------GQERFR-----------TITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEH 109 (183)
T ss_dssp EETTEEEEEEEEEC---------------------------CCTTTTTCSEEEEEEETTCHHHHH---HHHHHHHHHHHH
T ss_pred EECCEEEEEEEEcCC-------CChhhh-----------hhHHHHHhcCCEEEEEEECcCHHHHH---HHHHHHHHHHHh
Confidence 4566 678999999 642211 11233456899999999997432222 222222222221
Q ss_pred h--hcceEEEEEcCCCC
Q 036659 101 V--FDYMIVVFTGGDEL 115 (300)
Q Consensus 101 i--~~y~IVlFT~gD~L 115 (300)
. -.-.|||.|.-|-.
T Consensus 110 ~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 110 ASADVEKMILGNKCDVN 126 (183)
T ss_dssp SCTTCEEEEEEEC--CC
T ss_pred cCCCCCEEEEEECccCC
Confidence 1 12456777766644
No 66
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.66 E-value=0.51 Score=37.36 Aligned_cols=74 Identities=19% Similarity=0.091 Sum_probs=41.1
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG 98 (300)
..++| ..+.++||| |.-+. .........+.|++++|+.+..+-+-++. ..+..+.....
T Consensus 52 ~~~~~~~~~~~l~Dt~-------G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 113 (186)
T 2bme_A 52 INVGGKYVKLQIWDTA-------GQERF-----------RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 113 (186)
T ss_dssp EEETTEEEEEEEEEEC-------CSGGG-----------HHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC
T ss_pred EEECCEEEEEEEEeCC-------CcHHH-----------HHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence 34566 578999999 73211 11223345689999999999743322221 12222233322
Q ss_pred hhhhcceEEEEEcCCCC
Q 036659 99 KNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~L 115 (300)
. -...+||+|.-|-.
T Consensus 114 ~--~~piilv~nK~Dl~ 128 (186)
T 2bme_A 114 Q--NIVIILCGNKKDLD 128 (186)
T ss_dssp T--TCEEEEEEECGGGG
T ss_pred C--CCcEEEEEECcccc
Confidence 2 23467777877744
No 67
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.63 E-value=1.3 Score=35.78 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=40.5
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG 98 (300)
..++| ..+.++||| |.-+..... .. ..++.|++|+|+.+..+.+-++ ...+..+....+
T Consensus 62 ~~~~~~~~~~~l~Dt~-------G~~~~~~~~-------~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 123 (213)
T 3cph_A 62 VDINGKKVKLQLWDTA-------GQERFRTIT-------TA----YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN 123 (213)
T ss_dssp EEETTEEEEEEEECCT-------TGGGGTCCC-------HH----HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT
T ss_pred EEECCEEEEEEEEeCC-------CcHHHHHHH-------HH----HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 35677 578999999 643322111 11 1257899999999874333222 122333333322
Q ss_pred hhhhcceEEEEEcCCC
Q 036659 99 KNVFDYMIVVFTGGDE 114 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~ 114 (300)
. -..+|||+|.-|-
T Consensus 124 ~--~~piilv~nK~Dl 137 (213)
T 3cph_A 124 D--EAQLLLVGNKSDM 137 (213)
T ss_dssp T--CSEEEEEEECTTC
T ss_pred C--CCCEEEEEECCCC
Confidence 1 2356788887774
No 68
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.62 E-value=0.54 Score=36.62 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=38.8
Q ss_pred eCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchh
Q 036659 24 IQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKN 100 (300)
Q Consensus 24 ~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~ 100 (300)
+++ ..+.++||| |.-+.. ......+ .+.|++++|+.+..+.+-++. ..+..+......
T Consensus 59 ~~~~~~~~~l~Dt~-------G~~~~~-------~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~- 119 (179)
T 1z0f_A 59 VSGQKIKLQIWDTA-------GQERFR-------AVTRSYY----RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP- 119 (179)
T ss_dssp ETTEEEEEEEEECT-------TGGGTC-------HHHHHHH----HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-
T ss_pred ECCeEEEEEEEECC-------CChHhh-------hhHHHHh----ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC-
Confidence 444 478999999 632221 1122222 367999999999744333221 122223333222
Q ss_pred hhcceEEEEEcCCCC
Q 036659 101 VFDYMIVVFTGGDEL 115 (300)
Q Consensus 101 i~~y~IVlFT~gD~L 115 (300)
-...+||.|.-|-.
T Consensus 120 -~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 120 -NTVIILIGNKADLE 133 (179)
T ss_dssp -TCEEEEEEECTTCG
T ss_pred -CCcEEEEEECcccc
Confidence 23467778877754
No 69
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.51 E-value=1.7 Score=33.38 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=38.5
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~ 99 (300)
.++| ..+.++||| |.-+..... .. ...+.|++++|+.+..+.|-++ ...+..+....+.
T Consensus 46 ~~~~~~~~~~l~D~~-------G~~~~~~~~-------~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 107 (170)
T 1g16_A 46 DINGKKVKLQIWDTA-------GQERFRTIT-------TA----YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND 107 (170)
T ss_dssp ESSSCEEEEEEECCT-------TGGGTSCCC-------HH----HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred EECCEEEEEEEEeCC-------CChhhhhhH-------HH----HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 3455 368889999 643222111 11 1247899999999874333222 1222333333222
Q ss_pred hhhcceEEEEEcCCC
Q 036659 100 NVFDYMIVVFTGGDE 114 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~ 114 (300)
-...+||.|.-|-
T Consensus 108 --~~piilv~nK~Dl 120 (170)
T 1g16_A 108 --EAQLLLVGNKSDM 120 (170)
T ss_dssp --TCEEEEEEECTTC
T ss_pred --CCcEEEEEECccC
Confidence 2346777787774
No 70
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.47 E-value=0.27 Score=37.67 Aligned_cols=76 Identities=13% Similarity=0.039 Sum_probs=39.9
Q ss_pred eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659 22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG 98 (300)
..++|.. +.++||| |.-+. ..+.. .. ..+.|++++|+.+..+-+-++ ...+..+.....
T Consensus 44 ~~~~~~~~~~~l~D~~-------G~~~~----~~~~~---~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 105 (167)
T 1kao_A 44 IEVDSSPSVLEILDTA-------GTEQF----ASMRD---LY----IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105 (167)
T ss_dssp EEETTEEEEEEEEECC-------CTTCC----HHHHH---HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred EEECCEEEEEEEEECC-------Cchhh----HHHHH---HH----hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 3456654 8899999 73221 11111 11 235689999999874333222 122222333322
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
. .-..++||+|.-|...
T Consensus 106 ~-~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 106 Y-EKVPVILVGNKVDLES 122 (167)
T ss_dssp T-SCCCEEEEEECGGGGG
T ss_pred C-CCCCEEEEEECCcccc
Confidence 1 1235788888877543
No 71
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.46 E-value=0.2 Score=40.23 Aligned_cols=78 Identities=3% Similarity=-0.084 Sum_probs=46.1
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh---
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--- 101 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--- 101 (300)
.+..+.++||| |.-+........ +... .+++|++|+|+.+. .-...-.....++..+++...
T Consensus 89 ~~~~~~l~Dt~-------G~~~~~~~~~~~---~~~~----~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~ 153 (193)
T 2ged_A 89 DGSGVTLVDFP-------GHVKLRYKLSDY---LKTR----AKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSC 153 (193)
T ss_dssp CCTTCSEEEET-------TCCBSSCCHHHH---HHHH----GGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCeEEEEECC-------CCchHHHHHHHH---HHhh----cccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhcc
Confidence 46678999999 765443222111 1111 25689999999985 222223344455666655432
Q ss_pred --hcceEEEEEcCCCCCC
Q 036659 102 --FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 --~~y~IVlFT~gD~Le~ 117 (300)
-..++||+|.-|....
T Consensus 154 ~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 154 ENGIDILIACNKSELFTA 171 (193)
T ss_dssp TTCCCEEEEEECTTSTTC
T ss_pred ccCCCEEEEEEchHhcCC
Confidence 2457888888886654
No 72
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.42 E-value=0.22 Score=47.16 Aligned_cols=145 Identities=13% Similarity=0.128 Sum_probs=73.3
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCC-C-CChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDF-S-AGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA 88 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~-~-~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~ 88 (300)
+.|...... ...++|+.+.++||||.+....-.++. . ...-.. ...+ .+.+++++|+.+...+|.++..
T Consensus 213 gtT~d~~~~-~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~----~~~i----~~ad~vllv~d~~~~~~~~~~~ 283 (439)
T 1mky_A 213 GTTRDPVDD-EVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV----VDSI----EKADVVVIVLDATQGITRQDQR 283 (439)
T ss_dssp ------CCE-EEEETTEEEEESSCSCC-----------CCSCCHHH----HHHH----HHCSEEEEEEETTTCCCHHHHH
T ss_pred CCcCCceEE-EEEECCEEEEEEECCCCccccccchhhHHHHHHHHH----HHHH----hhCCEEEEEEeCCCCCCHHHHH
Confidence 344434333 357899999999999442111000000 0 000011 1112 2468999999987788888765
Q ss_pred HHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhc
Q 036659 89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLC 168 (300)
Q Consensus 89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C 168 (300)
....+.. .| .-+|||++--|.++....+++++... +.. -+..+
T Consensus 284 i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~---------------------------~~~~~ 326 (439)
T 1mky_A 284 MAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTKL-----FRE---------------------------KLYFI 326 (439)
T ss_dssp HHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHH---------------------------HCGGG
T ss_pred HHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHHH-----HHH---------------------------HhccC
Confidence 5544432 22 45778888777665432334444321 111 11122
Q ss_pred CC-eEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCC
Q 036659 169 DN-RCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQP 207 (300)
Q Consensus 169 ~~-R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~ 207 (300)
++ .++...-++ ...|.+|++.|..+..+.....
T Consensus 327 ~~~~~~~~SA~~------g~gv~~l~~~i~~~~~~~~~~i 360 (439)
T 1mky_A 327 DYSPLIFTSADK------GWNIDRMIDAMNLAYASYTTKV 360 (439)
T ss_dssp TTSCEEECBTTT------TBSHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcEEEEECCC------CCCHHHHHHHHHHHHHhhcccC
Confidence 22 344333333 2478899999988887765543
No 73
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.41 E-value=1.9 Score=33.50 Aligned_cols=72 Identities=15% Similarity=-0.008 Sum_probs=36.4
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhch--hhh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGK--NVF 102 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~--~i~ 102 (300)
...+.++||| |.-+. .........+.|++++|+.+..+-+-++. ..+..+....+. ..-
T Consensus 57 ~~~~~l~Dt~-------G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 118 (182)
T 1ky3_A 57 VATMQVWDTA-------GQERF-----------QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 118 (182)
T ss_dssp CEEEEEECCC----------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTT
T ss_pred EEEEEEEECC-------CChHh-----------hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCC
Confidence 3588999999 62211 11122345688999999998743322221 122223322221 012
Q ss_pred cceEEEEEcCCCC
Q 036659 103 DYMIVVFTGGDEL 115 (300)
Q Consensus 103 ~y~IVlFT~gD~L 115 (300)
..++||.|.-|-.
T Consensus 119 ~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 119 FPFVILGNKIDAE 131 (182)
T ss_dssp CCEEEEEECTTSC
T ss_pred CcEEEEEECCccc
Confidence 3567888877754
No 74
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.31 E-value=0.68 Score=38.09 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=26.1
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS 80 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~ 80 (300)
..++| ..+.++||| |.-+. ....... ..+.|++++|+.+..
T Consensus 71 ~~~~~~~~~l~i~Dt~-------G~~~~-------~~~~~~~----~~~~d~iilv~D~~~ 113 (201)
T 2hup_A 71 LEIQGKRVKLQIWDTA-------GQERF-------RTITQSY----YRSANGAILAYDITK 113 (201)
T ss_dssp EEETTEEEEEEEECCT-------TCGGG-------HHHHHHH----HTTCSEEEEEEETTB
T ss_pred EEECCEEEEEEEEECC-------CcHhH-------HHHHHHH----HhhCCEEEEEEECCC
Confidence 34566 488999999 74221 1111222 347899999999873
No 75
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.42 Score=38.07 Aligned_cols=68 Identities=16% Similarity=-0.006 Sum_probs=36.4
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh--hhcc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN--VFDY 104 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~--i~~y 104 (300)
..+.++||| |.-+.... .... .++.|++|+|+.+..+.+-++ ...++..+.... .-..
T Consensus 64 ~~~~i~Dt~-------G~~~~~~~-------~~~~----~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p 123 (195)
T 1x3s_A 64 AKLAIWDTA-------GQERFRTL-------TPSY----YRGAQGVILVYDVTRRDTFVK--LDNWLNELETYCTRNDIV 123 (195)
T ss_dssp EEEEEEEEC-------SSGGGCCS-------HHHH----HTTCCEEEEEEETTCHHHHHT--HHHHHHHHTTCCSCSCCE
T ss_pred EEEEEEeCC-------Cchhhhhh-------hHHH----hccCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCc
Confidence 578899999 64332221 1111 247899999999874322222 112223332211 1234
Q ss_pred eEEEEEcCCC
Q 036659 105 MIVVFTGGDE 114 (300)
Q Consensus 105 ~IVlFT~gD~ 114 (300)
.|||+|.-|.
T Consensus 124 ~ilv~nK~Dl 133 (195)
T 1x3s_A 124 NMLVGNKIDK 133 (195)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEECCcC
Confidence 6778887775
No 76
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.25 E-value=0.4 Score=36.99 Aligned_cols=74 Identities=20% Similarity=0.062 Sum_probs=39.8
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
.+++. .+.++||| |.-+..... .. ...+.|++++|+.+..+.|-++ ...++..+....
T Consensus 48 ~~~~~~~~~~l~Dt~-------G~~~~~~~~-------~~----~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~ 107 (168)
T 1z2a_A 48 QVNDEDVRLMLWDTA-------GQEEFDAIT-------KA----YYRGAQACVLVFSTTDRESFEA--ISSWREKVVAEV 107 (168)
T ss_dssp EETTEEEEEEEECCT-------TGGGTTCCC-------HH----HHTTCCEEEEEEETTCHHHHHT--HHHHHHHHHHHH
T ss_pred EECCEEEEEEEEcCC-------CcHhHHHHH-------HH----HhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhC
Confidence 34553 78899999 643222111 11 1247899999999974332222 112222222211
Q ss_pred hhcceEEEEEcCCCCC
Q 036659 101 VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le 116 (300)
.-..++||+|.-|-..
T Consensus 108 ~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 108 GDIPTALVQNKIDLLD 123 (168)
T ss_dssp CSCCEEEEEECGGGGG
T ss_pred CCCCEEEEEECcccCc
Confidence 2346788888888554
No 77
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.25 E-value=0.34 Score=37.13 Aligned_cols=75 Identities=13% Similarity=-0.015 Sum_probs=39.3
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~ 99 (300)
.++|. .+.++||| |.-+. ..+ ...+ ..+.+++++|+.+..+-+-++ ...+..+......
T Consensus 46 ~~~~~~~~~~l~D~~-------G~~~~----~~~---~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 107 (168)
T 1u8z_A 46 VLDGEEVQIDILDTA-------GQEDY----AAI---RDNY----FRSGEGFLCVFSITEMESFAATADFREQILRVKED 107 (168)
T ss_dssp EETTEEEEEEEEECC-------C---C----HHH---HHHH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred EECCEEEEEEEEECC-------Ccchh----HHH---HHHH----hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 45664 78999999 74321 111 1112 236789999999874322222 1222233333221
Q ss_pred hhhcceEEEEEcCCCCC
Q 036659 100 NVFDYMIVVFTGGDELE 116 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~Le 116 (300)
.-..++||.|.-|...
T Consensus 108 -~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 108 -ENVPFLLVGNKSDLED 123 (168)
T ss_dssp -TTSCEEEEEECGGGGG
T ss_pred -CCCcEEEEEECccccc
Confidence 1245788888877543
No 78
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=93.23 E-value=0.16 Score=53.19 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=55.7
Q ss_pred CEEEEEEeCCCCcccCcccCCCCC--ChHHHHHHHHHhhc-cCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSA--GSKFVGKEIVTCIG-MAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNV 101 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~--~~e~v~kEI~~ci~-l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i 101 (300)
+..+++|||| |++.... .++++...+.+.+. ......+++|+|+.....++.++. ..+..+. + .
T Consensus 149 ~~qL~LVDTP-------Gi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~-~ 216 (772)
T 3zvr_A 149 VLNLTLVDLP-------GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----P-Q 216 (772)
T ss_dssp CCSEEEEECC-------CCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----T-T
T ss_pred CCceEEEECC-------CcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----h-c
Confidence 4568999999 8887432 24444444444433 223567899999998867787775 3443332 2 2
Q ss_pred hcceEEEEEcCCCCCCCcccHHHhh
Q 036659 102 FDYMIVVFTGGDELEDNDETLEDYL 126 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~~~~tledyl 126 (300)
-..+|+|+|--|.+... ....+.+
T Consensus 217 g~pvIlVlNKiDlv~~~-~~~~~il 240 (772)
T 3zvr_A 217 GQRTIGVITKLDLMDEG-TDARDVL 240 (772)
T ss_dssp CSSEEEEEECTTSSCTT-CCSHHHH
T ss_pred CCCEEEEEeCcccCCcc-hhhHHHH
Confidence 35799999999988653 2334444
No 79
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.22 E-value=0.73 Score=37.34 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=37.3
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--hcc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--FDY 104 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~~y 104 (300)
..+.++||| |.-+. .. + ......+.|++|+|+.+..+-+- ..+..+...+-... -..
T Consensus 57 ~~~~l~Dt~-------G~~~~-------~~-~---~~~~~~~~d~ii~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~p 115 (203)
T 1zbd_A 57 IKLQIWDTA-------GLERY-------RT-I---TTAYYRGAMGFILMYDITNEESF---NAVQDWSTQIKTYSWDNAQ 115 (203)
T ss_dssp EEEEEEEEC-------CSGGG-------HH-H---HHTTGGGCSEEEEEEETTCHHHH---HHHHHHHHHHHHHSCSSCE
T ss_pred EEEEEEECC-------Cchhh-------cc-h---HHHhhcCCCEEEEEEECcCHHHH---HHHHHHHHHHHHhcCCCCC
Confidence 478999999 75221 11 1 22234588999999998743222 22222222221111 234
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
+|||.|.-|-..
T Consensus 116 iilv~nK~Dl~~ 127 (203)
T 1zbd_A 116 VLLVGNKCDMED 127 (203)
T ss_dssp EEEEEECTTCTT
T ss_pred EEEEEECcccCc
Confidence 677788777543
No 80
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.21 E-value=0.92 Score=35.56 Aligned_cols=76 Identities=13% Similarity=0.017 Sum_probs=40.4
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG 98 (300)
..+++. .+.++||| |.-+. ..+ ....+ .+.|++++|+.+..+-+-++ ...+..+.....
T Consensus 59 ~~~~~~~~~~~l~Dt~-------G~~~~----~~~---~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 120 (187)
T 2a9k_A 59 VVLDGEEVQIDILDTA-------GQEDY----AAI---RDNYF----RSGEGFLCVFSITEMESFAATADFREQILRVKE 120 (187)
T ss_dssp EEETTEEEEEEEEECC-------CTTCC----HHH---HHHHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCEEEEEEEEECC-------CCccc----HHH---HHHHh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence 345664 78899999 74322 111 11122 36789999999874322221 122233333322
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
. .-...|||.|.-|-..
T Consensus 121 ~-~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 121 D-ENVPFLLVGNKSDLED 137 (187)
T ss_dssp C-TTCCEEEEEECGGGGG
T ss_pred C-CCCCEEEEEECccccc
Confidence 1 1235688888777543
No 81
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.19 E-value=0.86 Score=37.41 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=37.5
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHH-HHHHhchh--hh
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS-WQTLFGKN--VF 102 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~-lq~lFG~~--i~ 102 (300)
+..+.++||| |. +........ ...+.|++|+|+.+..+.+ ...+.. +..+.... .-
T Consensus 83 ~~~l~l~Dt~-------G~-------~~~~~~~~~----~~~~~d~iilV~D~~~~~s---~~~~~~~l~~i~~~~~~~~ 141 (217)
T 2f7s_A 83 KVHLQLWDTA-------GQ-------ERFRSLTTA----FFRDAMGFLLMFDLTSQQS---FLNVRNWMSQLQANAYCEN 141 (217)
T ss_dssp EEEEEEEEEE-------SH-------HHHHHHHHH----HHTTCCEEEEEEETTCHHH---HHHHHHHHHTCCCCCTTTC
T ss_pred eEEEEEEECC-------Cc-------HhHHhHHHH----HhcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCcCC
Confidence 4579999999 62 222222222 2357899999999873322 222333 33332211 12
Q ss_pred cceEEEEEcCCCC
Q 036659 103 DYMIVVFTGGDEL 115 (300)
Q Consensus 103 ~y~IVlFT~gD~L 115 (300)
..+|||+|--|..
T Consensus 142 ~piilV~NK~Dl~ 154 (217)
T 2f7s_A 142 PDIVLIGNKADLP 154 (217)
T ss_dssp CEEEEEEECTTCG
T ss_pred CCEEEEEECCccc
Confidence 3467777777744
No 82
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=93.10 E-value=0.69 Score=43.81 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=48.1
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+++.+++|||| |.-+ + .+.+...+ .+.|++|||+.+....+.+....+..+. .+| ..
T Consensus 101 ~~~~~~~iiDtp-------Gh~~------f-~~~~~~~~----~~aD~~ilVvDa~~g~~~qt~~~l~~~~-~~~---~~ 158 (434)
T 1zun_B 101 TAKRKFIIADTP-------GHEQ------Y-TRNMATGA----STCDLAIILVDARYGVQTQTRRHSYIAS-LLG---IK 158 (434)
T ss_dssp CSSEEEEEEECC-------CSGG------G-HHHHHHHH----TTCSEEEEEEETTTCSCHHHHHHHHHHH-HTT---CC
T ss_pred cCCceEEEEECC-------ChHH------H-HHHHHHHH----hhCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CC
Confidence 468899999999 7432 1 23344433 5889999999998777766665555443 333 34
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
+.||+++--|...
T Consensus 159 ~iIvviNK~Dl~~ 171 (434)
T 1zun_B 159 HIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEEECTTTTT
T ss_pred eEEEEEEcCcCCc
Confidence 6888888888654
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.01 E-value=0.5 Score=38.02 Aligned_cols=75 Identities=12% Similarity=0.020 Sum_probs=43.3
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN- 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~- 100 (300)
..++|..+.++||| |.-+... .......+.|++|+|+.+..+.+-+ .+...+..++...
T Consensus 62 ~~~~~~~~~l~Dt~-------G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~ 121 (190)
T 2h57_A 62 FKSSSLSFTVFDMS-------GQGRYRN-----------LWEHYYKEGQAIIFVIDSSDRLRMV--VAKEELDTLLNHPD 121 (190)
T ss_dssp EECSSCEEEEEEEC-------CSTTTGG-----------GGGGGGGGCSEEEEEEETTCHHHHH--HHHHHHHHHHHSTT
T ss_pred EEECCEEEEEEECC-------CCHHHHH-----------HHHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhChh
Confidence 45678999999999 6432211 1122335789999999987432211 2223344443322
Q ss_pred ---hhcceEEEEEcCCCCC
Q 036659 101 ---VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 ---i~~y~IVlFT~gD~Le 116 (300)
.-..+|||+|--|-..
T Consensus 122 ~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 122 IKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TTTSCCCEEEEEECTTSTT
T ss_pred hccCCCeEEEEEeCcCccc
Confidence 1235778888777554
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.19 Score=40.40 Aligned_cols=72 Identities=24% Similarity=0.180 Sum_probs=40.9
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~ 105 (300)
..+.++||| |.-+.. .+.. .. .++.|++|+|+.+..+-+-++ ...+..+..+.+...-..+
T Consensus 56 ~~~~l~Dt~-------G~~~~~----~~~~---~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi 117 (199)
T 2gf0_A 56 CTLQITDTT-------GSHQFP----AMQR---LS----ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117 (199)
T ss_dssp EEEEEEECC-------GGGSCH----HHHH---HH----HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE
T ss_pred EEEEEEeCC-------ChHHhH----HHHH---Hh----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 378999999 743321 1111 11 235799999999974333222 2233445454443223457
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
|||+|--|...
T Consensus 118 ilv~nK~Dl~~ 128 (199)
T 2gf0_A 118 MLVGNKCDETQ 128 (199)
T ss_dssp EEEEECTTCSS
T ss_pred EEEEECccCCc
Confidence 88888888543
No 85
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.88 E-value=0.034 Score=52.11 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=45.3
Q ss_pred eeCC-EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC---CCCHHHHHHHHHHHHHhc
Q 036659 23 RIQV-VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS---RFSQEEEAALHSWQTLFG 98 (300)
Q Consensus 23 ~~~G-r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~---rfT~EE~~al~~lq~lFG 98 (300)
.+++ ..+.++||| |+.+....-..+..+..+.+ ...+++|+|+.+.+ +-+-++...+......++
T Consensus 201 ~~~~~~~~~l~DtP-------G~i~~a~~~~~l~~~fl~~i----~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~ 269 (342)
T 1lnz_A 201 ETDDGRSFVMADLP-------GLIEGAHQGVGLGHQFLRHI----ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN 269 (342)
T ss_dssp ECSSSCEEEEEEHH-------HHHHHTTCTTTTHHHHHHHH----HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred EeCCCceEEEecCC-------CCcccccccchhHHHHHHHH----HhccEEEEEEECCcccccChHHHHHHHHHHHHHhh
Confidence 3443 899999999 76431111111222222222 23589999999964 444444443333333344
Q ss_pred hh-hhcceEEEEEcCCCCC
Q 036659 99 KN-VFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~-i~~y~IVlFT~gD~Le 116 (300)
+. .-.-+|||+|--|.+.
T Consensus 270 ~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 270 LRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp SSTTTSCBCBEEECTTSTT
T ss_pred hhhcCCCEEEEEECccCCC
Confidence 32 2345788888888654
No 86
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.84 E-value=2.2 Score=33.68 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=24.9
Q ss_pred CCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 68 GIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
+.|++++|+.+..+-|-+. ...+..+....... -.-+|||.|.-|-..
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH 137 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCCEEEEEECTTCST
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEECCCchh
Confidence 5799999999974322221 11122222222111 124677888777544
No 87
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=92.74 E-value=0.56 Score=46.39 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=47.5
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..+++|||| |..|+.. +..+++. ..+++|+|+......+.+....+..+.. .|
T Consensus 77 ~~~~~~~i~liDTP-------G~~df~~-------~~~~~l~----~aD~allVvDa~~g~~~~t~~~~~~~~~-~~--- 134 (528)
T 3tr5_A 77 FPYKDYLINLLDTP-------GHADFTE-------DTYRTLT----AVDSALMVIDAAKGVEPRTIKLMEVCRL-RH--- 134 (528)
T ss_dssp EEETTEEEEEECCC-------CSTTCCH-------HHHHGGG----GCSEEEEEEETTTCSCHHHHHHHHHHHT-TT---
T ss_pred EEeCCEEEEEEECC-------CchhHHH-------HHHHHHH----hCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC---
Confidence 45789999999999 8766542 3444443 6789999999987788777766654432 12
Q ss_pred hcceEEEEEcCCCC
Q 036659 102 FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 ~~y~IVlFT~gD~L 115 (300)
.-+||+.+--|..
T Consensus 135 -iPiivviNK~Dl~ 147 (528)
T 3tr5_A 135 -TPIMTFINKMDRD 147 (528)
T ss_dssp -CCEEEEEECTTSC
T ss_pred -CCEEEEEeCCCCc
Confidence 2355666655654
No 88
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.72 E-value=1.1 Score=36.57 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=62.5
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh--hh
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN--VF 102 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~--i~ 102 (300)
.+..+.++||| |.-+...- ......+.+++++|+.+..+-+-+. ...++..+.... .-
T Consensus 70 ~~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~ 129 (201)
T 3oes_A 70 DEFHLHLVDTA-------GQDEYSIL-----------PYSFIIGVHGYVLVYSVTSLHSFQV--IESLYQKLHEGHGKTR 129 (201)
T ss_dssp -CEEEEEEEEC-------CCCTTCCC-----------CGGGTTTCCEEEEEEETTCHHHHHH--HHHHHHHHHC-----C
T ss_pred EEEEEEEEECC-------CccchHHH-----------HHHHHhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCC
Confidence 35678999999 64332211 1223468899999999973322221 122333332221 11
Q ss_pred cceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcch
Q 036659 103 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDE 182 (300)
Q Consensus 103 ~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de 182 (300)
.-+|||.|--|-......+.+ ..+. +....+-.|+....++
T Consensus 130 ~piilv~nK~Dl~~~~~v~~~---------~~~~---------------------------~~~~~~~~~~~~Sa~~--- 170 (201)
T 3oes_A 130 VPVVLVGNKADLSPEREVQAV---------EGKK---------------------------LAESWGATFMESSARE--- 170 (201)
T ss_dssp CCEEEEEECTTCGGGCCSCHH---------HHHH---------------------------HHHHHTCEEEECCTTC---
T ss_pred CCEEEEEECccCccccccCHH---------HHHH---------------------------HHHHhCCeEEEEeCCC---
Confidence 246778887775433211111 1122 4444555565555443
Q ss_pred hhchHHHHHHHHHHHHHHHHcCC
Q 036659 183 AKRTEQIWKLLSLVNSVAVQNDG 205 (300)
Q Consensus 183 ~~~~~Qv~eLL~~Ve~mv~~NgG 205 (300)
...|.+|+..|-..+.+..+
T Consensus 171 ---~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 171 ---NQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp ---HHHHHHHHHHHHHHHHHC--
T ss_pred ---CCCHHHHHHHHHHHHHhhhh
Confidence 36899999888777766544
No 89
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.70 E-value=1.6 Score=35.09 Aligned_cols=76 Identities=13% Similarity=0.020 Sum_probs=39.8
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG 98 (300)
..++|. .+.++||| |.-+. ..+.. .. ..+.+++++|+.+..+-+-+. ...+..+.....
T Consensus 55 ~~~~~~~~~~~l~Dt~-------G~~~~----~~~~~---~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 116 (206)
T 2bov_A 55 VVLDGEEVQIDILDTA-------GQEDY----AAIRD---NY----FRSGEGFLCVFSITEMESFAATADFREQILRVKE 116 (206)
T ss_dssp EEETTEEEEEEEEECC-------CTTCC----HHHHH---HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred EEECCEEEEEEEEcCC-------Chhhh----HHHHH---HH----HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 345664 78899999 74332 11111 11 236789999999874322211 112222222221
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
. .-...|||.|.-|-..
T Consensus 117 ~-~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 117 D-ENVPFLLVGNKSDLED 133 (206)
T ss_dssp C-SCCCEEEEEECTTCGG
T ss_pred C-CCCCEEEEEeccCccc
Confidence 1 1235688888877543
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.63 E-value=0.18 Score=39.05 Aligned_cols=72 Identities=24% Similarity=0.195 Sum_probs=40.5
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~ 105 (300)
..+.++||| |.-+.. .+ ....+ ++.|++++|+.+..+-+-++ ...+..+....+...-..+
T Consensus 51 ~~~~~~Dt~-------G~~~~~----~~---~~~~~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pi 112 (172)
T 2erx_A 51 CTLQITDTT-------GSHQFP----AM---QRLSI----SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112 (172)
T ss_dssp EEEEEEECC-------SCSSCH----HH---HHHHH----HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCE
T ss_pred EEEEEEECC-------CchhhH----HH---HHHhc----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCE
Confidence 368999999 754321 11 11112 35789999999974433332 2334445554443223457
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
+||.|.-|...
T Consensus 113 i~v~nK~Dl~~ 123 (172)
T 2erx_A 113 MLVGNKCDESP 123 (172)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEEcccccc
Confidence 88888877543
No 91
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.59 E-value=0.67 Score=37.41 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=37.5
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--h
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--F 102 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~ 102 (300)
.+..+.++||| |. +....- ......+.+++|+|+.+..+-+ -..+..+...+.... -
T Consensus 70 ~~~~~~i~Dt~-------G~-------~~~~~~----~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~ 128 (191)
T 3dz8_A 70 KRVKLQIWDTA-------GQ-------ERYRTI----TTAYYRGAMGFILMYDITNEES---FNAVQDWATQIKTYSWDN 128 (191)
T ss_dssp TTEEEEEECHH-------HH-------HHCHHH----HHHHHTTCCEEEEEEETTCHHH---HHTHHHHHHHHHHHSCTT
T ss_pred EEEEEEEEeCC-------Ch-------HHHHHH----HHHHHccCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCC
Confidence 45689999999 62 111111 2222357899999999974322 222333333332211 1
Q ss_pred cceEEEEEcCCCC
Q 036659 103 DYMIVVFTGGDEL 115 (300)
Q Consensus 103 ~y~IVlFT~gD~L 115 (300)
.-+|||.|--|-.
T Consensus 129 ~piilv~nK~Dl~ 141 (191)
T 3dz8_A 129 AQVILVGNKCDME 141 (191)
T ss_dssp CEEEEEEECTTCG
T ss_pred CCEEEEEECCCCc
Confidence 2456777766643
No 92
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.56 E-value=0.099 Score=40.43 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=24.1
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR 81 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r 81 (300)
+..+.++||| |.-+.. .+ ... ...+.|++|+|+.+..+
T Consensus 54 ~~~~~~~D~~-------G~~~~~----~~---~~~----~~~~~d~~i~v~d~~~~ 91 (170)
T 1r2q_A 54 TVKFEIWDTA-------GQERYH----SL---APM----YYRGAQAAIVVYDITNE 91 (170)
T ss_dssp EEEEEEEEEC-------CSGGGG----GG---HHH----HHTTCSEEEEEEETTCH
T ss_pred EEEEEEEeCC-------CcHHhh----hh---hHH----hccCCCEEEEEEECCCH
Confidence 4578999999 632211 11 111 23578999999998743
No 93
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.42 E-value=1.3 Score=41.49 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=48.7
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC--CHHHHHHHHHHHHHhc
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF--SQEEEAALHSWQTLFG 98 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf--T~EE~~al~~lq~lFG 98 (300)
...++|..+.++||| |+... .+.+.+.. +..-+. .....+++|+|+.+.... +.+....+..+...+|
T Consensus 220 ~i~~~g~~v~l~DT~-------G~i~~-lp~~lve~-f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~ 289 (364)
T 2qtf_A 220 AIPINNRKIMLVDTV-------GFIRG-IPPQIVDA-FFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIG 289 (364)
T ss_dssp EEEETTEEEEEEECC-------CBCSS-CCGGGHHH-HHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCEEEEEEeCC-------Cchhc-CCHHHHHH-HHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC
Confidence 356789999999999 75331 12222211 221111 124668999999986443 2333333444444455
Q ss_pred hhhhcceEEEEEcCCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le~ 117 (300)
.. -.-+|+|++--|.+.+
T Consensus 290 ~~-~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 290 VS-GKPILVTLNKIDKING 307 (364)
T ss_dssp CC-SCCEEEEEECGGGCCS
T ss_pred cC-CCCEEEEEECCCCCCc
Confidence 32 1347888888887654
No 94
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.28 E-value=0.41 Score=37.68 Aligned_cols=75 Identities=19% Similarity=0.041 Sum_probs=42.6
Q ss_pred eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHh
Q 036659 22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLF 97 (300)
Q Consensus 22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lF 97 (300)
..++|.. +.++||| |.-+... .......+.|++++|+.+..+-|-++. ..+..+....
T Consensus 46 ~~~~~~~~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 107 (186)
T 1mh1_A 46 VMVDGKPVNLGLWDTA-------GQEDYDR-----------LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 107 (186)
T ss_dssp EEETTEEEEEEEECCC-------CSGGGTT-----------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS
T ss_pred EEECCEEEEEEEEECC-------CCHhHHH-----------HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC
Confidence 3456654 5599999 6533211 112235688999999999744333332 2333343332
Q ss_pred chhhhcceEEEEEcCCCCCC
Q 036659 98 GKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 98 G~~i~~y~IVlFT~gD~Le~ 117 (300)
+ -..+|||.|.-|-..+
T Consensus 108 ~---~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 108 P---NTPIILVGTKLDLRDD 124 (186)
T ss_dssp T---TSCEEEEEECHHHHTC
T ss_pred C---CCCEEEEeEccccccc
Confidence 2 2357888887775543
No 95
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.13 E-value=0.75 Score=36.09 Aligned_cols=70 Identities=21% Similarity=0.160 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~ 105 (300)
..+.++||| |.-.... + .. ....+.|++++|+.+..+.|-++ ...+..+...... -.-+
T Consensus 61 ~~~~i~Dt~-------G~~~~~~----~---~~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ 120 (181)
T 2efe_B 61 VKFEIWDTA-------GQERYHS----L---AP----MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVM 120 (181)
T ss_dssp EEEEEEECC-------CSGGGGG----G---TH----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEE
T ss_pred EEEEEEeCC-------CChhhhh----h---hH----HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcE
Confidence 479999999 6322110 0 11 12347899999999874433222 2222333322211 1236
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
+||+|.-|...
T Consensus 121 i~v~nK~Dl~~ 131 (181)
T 2efe_B 121 ALAGNKSDLLD 131 (181)
T ss_dssp EEEEECTTCTT
T ss_pred EEEEECCcccc
Confidence 77778777544
No 96
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.97 E-value=1.2 Score=35.84 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=40.1
Q ss_pred eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659 22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK 99 (300)
Q Consensus 22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~ 99 (300)
..++|.. +.++||| |.-+.. ........+.|++++|+.+..+-|-++ +...|...+..
T Consensus 64 ~~~~~~~~~~~i~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~ 123 (194)
T 3reg_A 64 MKYKNEEFILHLWDTA-------GQEEYD-----------RLRPLSYADSDVVLLCFAVNNRTSFDN--ISTKWEPEIKH 123 (194)
T ss_dssp EEETTEEEEEEEEEEC-------CSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHH--HHHTHHHHHHH
T ss_pred EEECCEEEEEEEEECC-------CcHHHH-----------HHhHhhccCCcEEEEEEECCCHHHHHH--HHHHHHHHHHH
Confidence 3456654 5999999 632211 122334568999999999974333222 11223333322
Q ss_pred hhh-cceEEEEEcCCCCC
Q 036659 100 NVF-DYMIVVFTGGDELE 116 (300)
Q Consensus 100 ~i~-~y~IVlFT~gD~Le 116 (300)
..- .-+|||.|--|-..
T Consensus 124 ~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 124 YIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp HCTTSEEEEEEECGGGCC
T ss_pred hCCCCCEEEEEEChhhcc
Confidence 221 24667777666443
No 97
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.74 E-value=1.2 Score=35.82 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=38.5
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-hhcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN-VFDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~-i~~y 104 (300)
+..+.++||| |.-+..... .. ...+.|++|+|+.+..+.+-++ ...++..+.... .-..
T Consensus 73 ~~~~~i~Dt~-------G~~~~~~~~-------~~----~~~~~d~vi~v~D~~~~~s~~~--~~~~l~~i~~~~~~~~p 132 (193)
T 2oil_A 73 AVKAQIWDTA-------GLERYRAIT-------SA----YYRGAVGALLVFDLTKHQTYAV--VERWLKELYDHAEATIV 132 (193)
T ss_dssp EEEEEEEEES-------CCCTTCTTH-------HH----HHTTCCEEEEEEETTCHHHHHT--HHHHHHHHHTTSCTTCE
T ss_pred EEEEEEEeCC-------Cchhhhhhh-------HH----HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCe
Confidence 4578999999 764432211 11 1247899999999874333221 222333333221 1234
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
+|||+|--|-..
T Consensus 133 iilv~nK~Dl~~ 144 (193)
T 2oil_A 133 VMLVGNKSDLSQ 144 (193)
T ss_dssp EEEEEECGGGGG
T ss_pred EEEEEECCCccc
Confidence 677777767443
No 98
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=91.67 E-value=1.6 Score=40.75 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=44.7
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+.+++|||| |. +...++..+.+ ..++++|||+.+...+ ..+....+..+. .+| ...+
T Consensus 83 ~~i~iiDtP-------Gh-------~~f~~~~~~~~----~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~~---~~~i 140 (410)
T 1kk1_A 83 RRVSFIDAP-------GH-------EALMTTMLAGA----SLMDGAILVIAANEPCPRPQTREHLMALQ-IIG---QKNI 140 (410)
T ss_dssp EEEEEEECS-------SH-------HHHHHHHHHCG----GGCSEEEEEEETTSCSSCHHHHHHHHHHH-HHT---CCCE
T ss_pred cEEEEEECC-------Ch-------HHHHHHHHhhh----hhCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCcE
Confidence 789999999 73 22334444433 3679999999998655 555555555443 333 2467
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
||+++--|...
T Consensus 141 ivviNK~Dl~~ 151 (410)
T 1kk1_A 141 IIAQNKIELVD 151 (410)
T ss_dssp EEEEECGGGSC
T ss_pred EEEEECccCCC
Confidence 88888878554
No 99
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.60 E-value=3.8 Score=31.81 Aligned_cols=75 Identities=12% Similarity=-0.046 Sum_probs=41.9
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~ 99 (300)
.++|. .+.++||| |.-. ..........+.|++++|+.+..+-+-++ ...+..+....+.
T Consensus 50 ~~~~~~~~~~i~Dt~-------G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 111 (177)
T 1wms_A 50 EVDGHFVTMQIWDTA-------GQER-----------FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 111 (177)
T ss_dssp EETTEEEEEEEEECC-------CCGG-----------GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC
T ss_pred EECCEEEEEEEEeCC-------Cchh-----------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccc
Confidence 45664 88999999 7321 11122334568899999999974333222 1222333333221
Q ss_pred h--hhcceEEEEEcCCCC
Q 036659 100 N--VFDYMIVVFTGGDEL 115 (300)
Q Consensus 100 ~--i~~y~IVlFT~gD~L 115 (300)
. .-...|||.|--|..
T Consensus 112 ~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 112 KEPESFPFVILGNKIDIS 129 (177)
T ss_dssp SCTTTSCEEEEEECTTCS
T ss_pred cccCCCcEEEEEECCccc
Confidence 1 123568888887754
No 100
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.54 E-value=2.6 Score=33.91 Aligned_cols=75 Identities=20% Similarity=0.078 Sum_probs=42.5
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHh
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLF 97 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lF 97 (300)
..++|. .+.++||| |.-+.... ......+.|++++|+.+..+-|-++. ..+..+....
T Consensus 61 ~~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 122 (201)
T 2q3h_A 61 VSVDGRPVRLQLCDTA-------GQDEFDKL-----------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC 122 (201)
T ss_dssp EEETTEEEEEEEEECC-------CSTTCSSS-----------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred EEECCEEEEEEEEECC-------CCHHHHHH-----------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 456776 56699999 65433221 12234588999999999744333332 1222233322
Q ss_pred chhhhcceEEEEEcCCCCCC
Q 036659 98 GKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 98 G~~i~~y~IVlFT~gD~Le~ 117 (300)
+ -..+|||.|.-|-..+
T Consensus 123 ~---~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 123 P---KAPIILVGTQSDLRED 139 (201)
T ss_dssp S---SSCEEEEEECGGGGGC
T ss_pred C---CCCEEEEEECHhhhhc
Confidence 1 2356788887775543
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.47 E-value=0.62 Score=36.92 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=30.4
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
..++|..+.++||| |..+..... ..+.+.... +...++|++++|+.+.
T Consensus 45 ~~~~~~~l~i~Dt~-------G~~~~~~~~--~~~~~~~~~-~~~~~~~~~i~v~D~~ 92 (165)
T 2wji_A 45 FEYNGEKFKVVDLP-------GVYSLTANS--IDEIIARDY-IINEKPDLVVNIVDAT 92 (165)
T ss_dssp EEETTEEEEEEECC-------CCSCSSSSS--HHHHHHHHH-HHHHCCSEEEEEEETT
T ss_pred EEECCcEEEEEECC-------CcccCCCcc--hhHHHHHHH-HhcCCCCEEEEEecCC
Confidence 34678999999999 776654322 112222211 1124789999999986
No 102
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=91.33 E-value=0.91 Score=46.18 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=48.9
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..+++|||| |..|+. .++.+++. +.+++|+|+......+......+..+.. ++
T Consensus 70 ~~~~~~~i~liDTP-------G~~df~-------~~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~-~~--- 127 (693)
T 2xex_A 70 AAWEGHRVNIIDTP-------GHVDFT-------VEVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATT-YG--- 127 (693)
T ss_dssp EEETTEEEEEECCC-------CCSSCC-------HHHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHH-TT---
T ss_pred EEECCeeEEEEECc-------CCcchH-------HHHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHH-cC---
Confidence 56789999999999 887653 23444443 4789999999987788887776665443 22
Q ss_pred hcceEEEEEcCCCCC
Q 036659 102 FDYMIVVFTGGDELE 116 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le 116 (300)
.-.|+|.+--|...
T Consensus 128 -~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 128 -VPRIVFVNKMDKLG 141 (693)
T ss_dssp -CCEEEEEECTTSTT
T ss_pred -CCEEEEEECCCccc
Confidence 23555556556543
No 103
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.26 E-value=0.39 Score=38.94 Aligned_cols=71 Identities=13% Similarity=-0.058 Sum_probs=37.5
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFD 103 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~ 103 (300)
.+..+.++||| |.-+.... ... ...+.+++|+|+.+..+-+-++. ..+..+...... -.
T Consensus 70 ~~~~~~i~Dt~-------G~~~~~~~-------~~~----~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~ 129 (192)
T 2fg5_A 70 ELHKFLIWDTA-------GQERFHSL-------APM----YYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NI 129 (192)
T ss_dssp SEEEEEEEEEC-------CSGGGGGG-------THH----HHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TC
T ss_pred EEEEEEEEcCC-------CchhhHhh-------hHH----hhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CC
Confidence 35689999999 63222110 111 12467999999999744332221 122222222111 23
Q ss_pred ceEEEEEcCCCC
Q 036659 104 YMIVVFTGGDEL 115 (300)
Q Consensus 104 y~IVlFT~gD~L 115 (300)
..|||.|--|-.
T Consensus 130 piiiv~NK~Dl~ 141 (192)
T 2fg5_A 130 VMAIAGNKCDLS 141 (192)
T ss_dssp EEEEEEECGGGG
T ss_pred cEEEEEECcccc
Confidence 567777777754
No 104
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.20 E-value=3 Score=32.36 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=39.7
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK 99 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~ 99 (300)
..++|. .+.++||| |.-+....... . ..+.|++++|+.+..+-+-++ ...++..++..
T Consensus 50 ~~~~~~~~~~~~~Dt~-------G~~~~~~~~~~-------~----~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~ 109 (181)
T 2fn4_A 50 CSVDGIPARLDILDTA-------GQEEFGAMREQ-------Y----MRAGHGFLLVFAINDRQSFNE--VGKLFTQILRV 109 (181)
T ss_dssp EEETTEEEEEEEEECC-------CTTTTSCCHHH-------H----HHHCSEEEEEEETTCHHHHHH--HHHHHHHHHHH
T ss_pred EEECCEEEEEEEEECC-------CchhhHHHHHH-------H----HhhCCEEEEEEeCCCHHHHHH--HHHHHHHHHHh
Confidence 346664 68889999 64433221111 1 135789999999874222221 12223333222
Q ss_pred hh--hcceEEEEEcCCCCC
Q 036659 100 NV--FDYMIVVFTGGDELE 116 (300)
Q Consensus 100 ~i--~~y~IVlFT~gD~Le 116 (300)
.. -.-.|||+|.-|-..
T Consensus 110 ~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 110 KDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp HTSSCCCEEEEEECGGGGG
T ss_pred cCCCCCCEEEEEECccccc
Confidence 11 124688888777543
No 105
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.17 E-value=0.25 Score=38.54 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=38.7
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~ 99 (300)
.++|. .+.++||| |.-+... .+..+ ..+.|++++|+.+..+.+-++ ...+..+....+.
T Consensus 57 ~~~~~~~~~~~~Dt~-------G~~~~~~-------~~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 118 (179)
T 2y8e_A 57 YLEDRTVRLQLWDTA-------GQERFRS-------LIPSY----IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS 118 (179)
T ss_dssp EETTEEEEEEEEEEC-------CSGGGGG-------GSHHH----HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred EECCeEEEEEEEECC-------CcHHHHH-------HHHHH----hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 45664 78999999 6322111 01111 237899999999874322221 1222223322221
Q ss_pred hhhcceEEEEEcCCCCC
Q 036659 100 NVFDYMIVVFTGGDELE 116 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~Le 116 (300)
+ .-+|||+|.-|-..
T Consensus 119 ~--~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 119 D--VIIMLVGNKTDLSD 133 (179)
T ss_dssp S--SEEEEEEECGGGGG
T ss_pred C--CcEEEEEECCcccc
Confidence 1 23677888777443
No 106
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.17 E-value=0.68 Score=37.04 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=45.5
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
+..+++..+.++||| |.-+.... ......+.|++|+|+.+..+-+-++ +...+..+....
T Consensus 59 ~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~ 118 (181)
T 2h17_A 59 EIVINNTRFLMWDIG-------GQESLRSS-----------WNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHE 118 (181)
T ss_dssp EEEETTEEEEEEEES-------SSGGGTCG-----------GGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCG
T ss_pred EEEECCEEEEEEECC-------CCHhHHHH-----------HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCh
Confidence 355789999999999 65322111 1222358899999999986544432 333444444321
Q ss_pred --hhcceEEEEEcCCCCC
Q 036659 101 --VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 --i~~y~IVlFT~gD~Le 116 (300)
.-..+|||.|--|-..
T Consensus 119 ~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 119 DLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGTTCEEEEEEECTTSTT
T ss_pred hhCCCeEEEEEECCCccc
Confidence 2234677777777543
No 107
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.09 E-value=1.7 Score=35.06 Aligned_cols=75 Identities=17% Similarity=0.054 Sum_probs=43.9
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN- 100 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~- 100 (300)
...++..+.++||| |.-+. ....... ..+.|++++|+.+..+-+-+ .....+..+....
T Consensus 62 ~~~~~~~~~l~Dt~-------G~~~~-------~~~~~~~----~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~ 121 (188)
T 1zd9_A 62 ITKGNVTIKLWDIG-------GQPRF-------RSMWERY----CRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQ 121 (188)
T ss_dssp EEETTEEEEEEEEC-------CSHHH-------HTTHHHH----HTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGG
T ss_pred EEeCCEEEEEEECC-------CCHhH-------HHHHHHH----HccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcc
Confidence 34678899999999 64221 1112222 25789999999987433322 2334444544321
Q ss_pred -hhcceEEEEEcCCCCC
Q 036659 101 -VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 -i~~y~IVlFT~gD~Le 116 (300)
.-.-+|||+|--|...
T Consensus 122 ~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 122 LQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp GTTCCEEEEEECTTSTT
T ss_pred cCCCCEEEEEECCCCcc
Confidence 1234778888777554
No 108
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.06 E-value=1.4 Score=35.36 Aligned_cols=74 Identities=16% Similarity=0.045 Sum_probs=42.3
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhc
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFG 98 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG 98 (300)
.++| ..+.++||| |.-+... .......+.|++++|+.+..+-|-++. ..+..+....+
T Consensus 60 ~~~~~~~~~~i~D~~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 121 (194)
T 2atx_A 60 TVGGKQYLLGLYDTA-------GQEDYDR-----------LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP 121 (194)
T ss_dssp ESSSCEEEEEEECCC-------CSSSSTT-----------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred EECCEEEEEEEEECC-------CCcchhH-----------HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 4455 578899999 7544321 122335688999999998743222221 22333333221
Q ss_pred hhhhcceEEEEEcCCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le~ 117 (300)
-...|||.|--|...+
T Consensus 122 ---~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 122 ---NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp ---TCCEEEEEECTTSTTC
T ss_pred ---CCCEEEEEEChhhccc
Confidence 2356788887775543
No 109
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.96 E-value=1.2 Score=36.49 Aligned_cols=75 Identities=20% Similarity=0.108 Sum_probs=41.5
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHHh
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSWQTLF 97 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE--~~al~~lq~lF 97 (300)
..++|. .+.++||| |.-+... .......+.|++|+|+.+..+-+-++ ...+..+....
T Consensus 66 ~~~~~~~~~l~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 127 (201)
T 2gco_A 66 IEVDGKQVELALWDTA-------GQEDYDR-----------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC 127 (201)
T ss_dssp EEETTEEEEEEEECCC-------CSGGGTT-----------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS
T ss_pred EEECCEEEEEEEEECC-------CchhHHH-----------HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 345664 78899999 6322111 11223568899999999874322222 12223333221
Q ss_pred chhhhcceEEEEEcCCCCCC
Q 036659 98 GKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 98 G~~i~~y~IVlFT~gD~Le~ 117 (300)
. -.-++||.|--|.+..
T Consensus 128 -~--~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 128 -P--NVPIILVGNKKDLRQD 144 (201)
T ss_dssp -T--TCCEEEEEECGGGTTC
T ss_pred -C--CCCEEEEEecHHhhcC
Confidence 1 2346788887776554
No 110
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.87 E-value=0.74 Score=36.96 Aligned_cols=77 Identities=18% Similarity=0.066 Sum_probs=40.1
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG 98 (300)
..++| ..+.++||| |.-+ ....+.. ....+.|++|+|+.+..+-|-++ ...+..+...+.
T Consensus 62 ~~~~~~~~~~~l~Dt~-------G~~~-------~~~~~~~---~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~ 124 (189)
T 1z06_A 62 VDIDGERIKIQLWDTA-------GQER-------FRKSMVQ---HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL 124 (189)
T ss_dssp EEETTEEEEEEEEECC-------CSHH-------HHTTTHH---HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC
T ss_pred EEECCEEEEEEEEECC-------Cchh-------hhhhhhH---HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence 34566 478999999 6311 1101111 11247899999999874322222 122223333321
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
. .-..+|||.|.-|...
T Consensus 125 ~-~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 125 A-NDIPRILVGNKCDLRS 141 (189)
T ss_dssp C-SCCCEEEEEECTTCGG
T ss_pred C-CCCCEEEEEECccccc
Confidence 1 1234678888777543
No 111
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.83 E-value=2.5 Score=33.98 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=25.7
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS 80 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~ 80 (300)
..++|. .+.++||| |.-+..... .. ...+.|++|+|+.+..
T Consensus 63 ~~~~~~~~~~~i~Dt~-------G~~~~~~~~-------~~----~~~~~d~ii~v~d~~~ 105 (191)
T 2a5j_A 63 VNIDGKQIKLQIWDTA-------GQESFRSIT-------RS----YYRGAAGALLVYDITR 105 (191)
T ss_dssp EEETTEEEEEEEECCT-------TGGGTSCCC-------HH----HHTTCSEEEEEEETTC
T ss_pred EEECCEEEEEEEEECC-------CchhhhhhH-------HH----HhccCCEEEEEEECCC
Confidence 345664 78999999 643322111 11 1247899999999874
No 112
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=90.80 E-value=0.38 Score=47.74 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=42.0
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCC-------------------------CCCeEEEEEE
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAK-------------------------DGIHAVLVVF 76 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~-------------------------pGpHA~LLV~ 76 (300)
..|+|..||+|||| |-.|++. |+.+++..+. -|+-.+++|-
T Consensus 95 ~~~~~~~iNlIDTP-------GHvDF~~-------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fIN 160 (548)
T 3vqt_A 95 FPYRDRVVNLLDTP-------GHQDFSE-------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVN 160 (548)
T ss_dssp EEETTEEEEEECCC-------CGGGCSH-------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEECCEEEEEEeCC-------CcHHHHH-------HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEe
Confidence 57899999999999 8888863 3344433211 1334556666
Q ss_pred eCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 77 SVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 77 ~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
+++ |-..+=..+++.++..||..+
T Consensus 161 K~D-r~~ad~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 161 KMD-REALHPLDVMADIEQHLQIEC 184 (548)
T ss_dssp CTT-SCCCCHHHHHHHHHHHHTSEE
T ss_pred ccc-chhcchhHhhhhhhhhcCCce
Confidence 665 655555667777777776554
No 113
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.44 E-value=2.1 Score=35.39 Aligned_cols=114 Identities=10% Similarity=-0.022 Sum_probs=60.7
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y 104 (300)
+..+.++||| |.-....... . ...+.|++|+|+.+..+-|-++. ..+..+..... -.-
T Consensus 63 ~~~~~i~Dt~-------G~~~~~~~~~-------~----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p 121 (221)
T 3gj0_A 63 PIKFNVWDTA-------GQEKFGGLRD-------G----YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIP 121 (221)
T ss_dssp EEEEEEEEEC-------SGGGTSCCCH-------H----HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCC
T ss_pred EEEEEEEeCC-------ChHHHhHHHH-------H----HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCC
Confidence 4578999999 6432221111 1 12378999999999843332221 12222222221 224
Q ss_pred eEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchhh
Q 036659 105 MIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAK 184 (300)
Q Consensus 105 ~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~~ 184 (300)
+|||.|--|-.... . ...... +.+..+-.|+....++
T Consensus 122 ~ilv~nK~Dl~~~~---~--------~~~~~~---------------------------~~~~~~~~~~~~Sa~~----- 158 (221)
T 3gj0_A 122 IVLCGNKVDIKDRK---V--------KAKSIV---------------------------FHRKKNLQYYDISAKS----- 158 (221)
T ss_dssp EEEEEECTTSSSCS---S--------CGGGCC---------------------------HHHHHTCEEEECBGGG-----
T ss_pred EEEEEECCcccccc---c--------cHHHHH---------------------------HHHHcCCEEEEEeCCC-----
Confidence 67777776743321 1 111223 4455566666655443
Q ss_pred chHHHHHHHHHHHHHHHHcC
Q 036659 185 RTEQIWKLLSLVNSVAVQND 204 (300)
Q Consensus 185 ~~~Qv~eLL~~Ve~mv~~Ng 204 (300)
...|.+|+..+-..+..+.
T Consensus 159 -~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 159 -NYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp -TBTTTHHHHHHHHHHHTCT
T ss_pred -CCCHHHHHHHHHHHHHhCc
Confidence 2467888888777666554
No 114
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.36 E-value=2 Score=34.87 Aligned_cols=75 Identities=15% Similarity=0.032 Sum_probs=40.9
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI 106 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I 106 (300)
..+.++||| |.-+.....-. .... ..+.|++|+|+.+..++.+.......++..+....----.|
T Consensus 69 ~~l~i~Dt~-------G~~~~~~~~~~----~~~~----~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~pii 133 (196)
T 3llu_A 69 VNFQIWDFP-------GQMDFFDPTFD----YEMI----FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFE 133 (196)
T ss_dssp CCEEEEECC-------SSCCTTCTTCC----HHHH----HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred eEEEEEECC-------CCHHHHhhhhh----cccc----cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 579999999 65432211100 0111 13689999999998664444444445555542211123456
Q ss_pred EEEEcCCCCC
Q 036659 107 VVFTGGDELE 116 (300)
Q Consensus 107 VlFT~gD~Le 116 (300)
||.+--|-+.
T Consensus 134 lv~nK~Dl~~ 143 (196)
T 3llu_A 134 VFIHKVDGLS 143 (196)
T ss_dssp EEEECGGGSC
T ss_pred EEEeccccCc
Confidence 6666666543
No 115
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.25 E-value=2.9 Score=34.11 Aligned_cols=73 Identities=21% Similarity=0.088 Sum_probs=38.2
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~ 99 (300)
.++| ..+.++||| |.-+.... .. ....+.|++|+|+.+..+-+-++ ...+..+......
T Consensus 68 ~~~~~~~~l~l~Dt~-------G~~~~~~~-------~~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 129 (200)
T 2o52_A 68 NVGGKTVKLQIWDTA-------GQERFRSV-------TR----SYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP 129 (200)
T ss_dssp EETTEEEEEEEECCT-------THHHHSCC-------CH----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT
T ss_pred EECCeeeEEEEEcCC-------CcHhHHHH-------HH----HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 4566 589999999 63211110 11 12347899999999874333222 1122222222221
Q ss_pred hhhcceEEEEEcCCCC
Q 036659 100 NVFDYMIVVFTGGDEL 115 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~L 115 (300)
-.-+|||.|--|-.
T Consensus 130 --~~piilv~nK~Dl~ 143 (200)
T 2o52_A 130 --NIVVILCGNKKDLD 143 (200)
T ss_dssp --TCEEEEEEECGGGG
T ss_pred --CCcEEEEEECCCcc
Confidence 12467777776643
No 116
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.20 E-value=6.4 Score=31.89 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=40.3
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...++..+.++||| |.-+.... ....+ .+.+++|+|+.+..+-+-+ .+...+..+.....
T Consensus 68 ~~~~~~~~~i~Dt~-------G~~~~~~~-------~~~~~----~~~d~iilv~D~~~~~s~~--~~~~~l~~~~~~~~ 127 (192)
T 2b6h_A 68 VEYKNICFTVWDVG-------GQDKIRPL-------WRHYF----QNTQGLIFVVDSNDRERVQ--ESADELQKMLQEDE 127 (192)
T ss_dssp EEETTEEEEEEECC------------CTT-------HHHHH----HTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGG
T ss_pred EEECCEEEEEEECC-------CCHhHHHH-------HHHHh----ccCCEEEEEEECCCHHHHH--HHHHHHHHHhcccc
Confidence 34678899999999 76433221 11112 4789999999997543322 22344444443321
Q ss_pred --hcceEEEEEcCCCC
Q 036659 102 --FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 --~~y~IVlFT~gD~L 115 (300)
-.-+|||.|--|-.
T Consensus 128 ~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 128 LRDAVLLVFANKQDMP 143 (192)
T ss_dssp GTTCEEEEEEECTTST
T ss_pred cCCCeEEEEEECCCCC
Confidence 12456777766643
No 117
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.17 E-value=4.4 Score=32.72 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=39.0
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK 99 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~ 99 (300)
..++| ..+.++||| |.-+. .......+ .+.|++|+|+.+..+.|-++ +..+...+..
T Consensus 68 ~~~~~~~~~l~l~Dt~-------G~~~~-------~~~~~~~~----~~~d~iilV~D~~~~~s~~~---~~~~~~~i~~ 126 (192)
T 2il1_A 68 VELRGKKIRLQIWDTA-------GQERF-------NSITSAYY----RSAKGIILVYDITKKETFDD---LPKWMKMIDK 126 (192)
T ss_dssp EEETTEEEEEEEEEEC-------CSGGG-------HHHHHHHH----HHCSEEEEEEETTCHHHHHT---HHHHHHHHHH
T ss_pred EEECCeEEEEEEEeCC-------CcHHH-------HHHHHHHh----cCCCEEEEEEECcCHHHHHH---HHHHHHHHHH
Confidence 34566 478999999 63221 11122222 36789999999974444333 2222222222
Q ss_pred hh--hcceEEEEEcCCCC
Q 036659 100 NV--FDYMIVVFTGGDEL 115 (300)
Q Consensus 100 ~i--~~y~IVlFT~gD~L 115 (300)
.. -.-+|||.|--|..
T Consensus 127 ~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 127 YASEDAELLLVGNKLDCE 144 (192)
T ss_dssp HSCTTCEEEEEEECGGGG
T ss_pred hcCCCCcEEEEEECcccc
Confidence 11 13467777777744
No 118
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.07 E-value=3.7 Score=31.92 Aligned_cols=75 Identities=13% Similarity=-0.026 Sum_probs=38.8
Q ss_pred eeCC---EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659 23 RIQV---VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG 98 (300)
Q Consensus 23 ~~~G---r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG 98 (300)
.++| ..+.++||| |.-..... .... ..+.|++++|+.+..+-|-++. ..+..+.....
T Consensus 49 ~~~~~~~~~~~~~Dt~-------G~~~~~~~-------~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 110 (178)
T 2hxs_A 49 TLPGNLNVTLQIWDIG-------GQTIGGKM-------LDKY----IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE 110 (178)
T ss_dssp EETTTEEEEEEEEECT-------TCCTTCTT-------HHHH----HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHH
T ss_pred EeCCCCEEEEEEEECC-------CCccccch-------hhHH----HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence 4555 689999999 64332211 1111 2478999999999743332221 12222222211
Q ss_pred hh-hhcceEEEEEcCCCC
Q 036659 99 KN-VFDYMIVVFTGGDEL 115 (300)
Q Consensus 99 ~~-i~~y~IVlFT~gD~L 115 (300)
.. -...+|||.|--|-.
T Consensus 111 ~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 111 ESETQPLVALVGNKIDLE 128 (178)
T ss_dssp HHTCCCEEEEEEECGGGG
T ss_pred ccCCCCeEEEEEEccccc
Confidence 11 112256777776643
No 119
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=89.75 E-value=0.78 Score=41.91 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=39.6
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
...++..+.++||| |--....- ...+ ..+.|+||+|+.+..+-+-++ ....+..++....
T Consensus 204 ~~~~~~~l~i~Dt~-------G~~~~~~~-------~~~~----~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~ 263 (329)
T 3o47_A 204 VEYKNISFTVWDVG-------GQDKIRPL-------WRHY----FQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDE 263 (329)
T ss_dssp EEETTEEEEEEECC------------CCS-------HHHH----HTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGG
T ss_pred EecCcEEEEEEECC-------CCHhHHHH-------HHHH----hccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhc
Confidence 34578899999999 63222111 1112 247899999999964433322 2233444433322
Q ss_pred h--cceEEEEEcCCCCC
Q 036659 102 F--DYMIVVFTGGDELE 116 (300)
Q Consensus 102 ~--~y~IVlFT~gD~Le 116 (300)
. .-+|||.|--|-..
T Consensus 264 ~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 264 LRDAVLLVFANKQDLPN 280 (329)
T ss_dssp GTTCEEEEEEECTTSTT
T ss_pred cCCCeEEEEEECccCCc
Confidence 1 23566666666443
No 120
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.75 E-value=3.2 Score=31.72 Aligned_cols=75 Identities=19% Similarity=0.078 Sum_probs=39.5
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhch
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~ 99 (300)
.+++. .+.++||| |.-+.. .....+ .++.|++++|+.+..+.|-++. ..+..+....+.
T Consensus 46 ~~~~~~~~~~~~D~~-------G~~~~~-------~~~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 107 (170)
T 1ek0_A 46 TINEHTVKFEIWDTA-------GQERFA-------SLAPXY----YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK 107 (170)
T ss_dssp EETTEEEEEEEEEEC-------CSGGGG-------GGHHHH----HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred EECCEEEEEEEEECC-------CChhhh-------hhhhhh----hccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC
Confidence 34554 78999999 632211 111222 2577999999999743332221 112223322222
Q ss_pred hhhcceEEEEEcCCCCCC
Q 036659 100 NVFDYMIVVFTGGDELED 117 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~Le~ 117 (300)
+ ..++||.|.-|....
T Consensus 108 ~--~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 108 D--IIIALVGNKIDXLQE 123 (170)
T ss_dssp T--CEEEEEEECGGGGGS
T ss_pred C--CcEEEEEECCCcccc
Confidence 2 236677787775543
No 121
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.50 E-value=0.56 Score=46.92 Aligned_cols=80 Identities=20% Similarity=0.093 Sum_probs=46.7
Q ss_pred EEEEEEeCCCCcccCcccCC--CCCChHHHHHHHHHhhc-cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 27 VLEKVIDTRWVRHAIARLFD--FSAGSKFVGKEIVTCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd--~~~~~e~v~kEI~~ci~-l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
-.+.++|.| |++. ++.-+......|..-+. +...+..++|+|.+.+..+... .++..+..+=. .-.
T Consensus 147 p~LlLlDeP-------Gi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~--~~l~la~~v~~--~g~ 215 (608)
T 3szr_A 147 PDLTLIDLP-------GITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT--EALSMAQEVDP--EGD 215 (608)
T ss_dssp CCEEEEECC-------C------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC--HHHHHHHHHCS--SCC
T ss_pred CceeEeeCC-------CccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH--HHHHHHHHHhh--cCC
Confidence 468999999 7665 33323344445555443 2455566777787765454432 35555554422 235
Q ss_pred ceEEEEEcCCCCCC
Q 036659 104 YMIVVFTGGDELED 117 (300)
Q Consensus 104 y~IVlFT~gD~Le~ 117 (300)
.+|+|+|.+|.+..
T Consensus 216 rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 216 RTIGILTKPDLVDK 229 (608)
T ss_dssp SEEEEEECGGGSSS
T ss_pred ceEEEecchhhcCc
Confidence 89999999998865
No 122
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.20 E-value=3 Score=34.61 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=38.1
Q ss_pred eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659 22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG 98 (300)
..++| ..+.++||| |.-....- ......+.|++|+|+.+..+.|-++. ..+..+....+
T Consensus 55 ~~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~ 116 (223)
T 3cpj_B 55 LEIEGKRIKAQIWDTA-------GQERYRAI-----------TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD 116 (223)
T ss_dssp EEETTEEEEEEEECCT-------TTTTTTCC-----------CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC
T ss_pred EEECCEEEEEEEEECC-------Cccchhhh-----------HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC
Confidence 34666 588999999 63222111 12234688999999998744333321 11222222211
Q ss_pred hhhhcceEEEEEcCCCC
Q 036659 99 KNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~L 115 (300)
. -.-.|||.|--|-.
T Consensus 117 ~--~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 117 D--NVAVGLIGNKSDLA 131 (223)
T ss_dssp ----CEEEEEECCGGGG
T ss_pred C--CCeEEEEEECcccc
Confidence 1 12356666766643
No 123
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=89.15 E-value=1.5 Score=41.67 Aligned_cols=132 Identities=8% Similarity=-0.004 Sum_probs=62.6
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..++|..+.++||| |.-+... -....-.+.++||+|+.+..+-+-++ ....+..+.....
T Consensus 361 ~~~~~~~~~l~Dt~-------G~~~~~~-----------~~~~~~~~ad~~i~V~D~~~~~s~~~--~~~~~~~~~~~~~ 420 (497)
T 3lvq_E 361 VTYKNVKFNVWDVG-------GQDKIRP-----------LWRHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDRE 420 (497)
T ss_dssp EESSSCEEEEEEEC-------CCGGGSG-----------GGGGGGTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGG
T ss_pred EEeCCEEEEEEECC-------CcHHHHH-----------HHHHHhccCCEEEEEEECcchhHHHH--HHHHHHHHhhhhh
Confidence 34578899999999 6322211 02223468899999999875433222 2234444433221
Q ss_pred --hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCC
Q 036659 102 --FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKT 179 (300)
Q Consensus 102 --~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~ 179 (300)
-.-+|||++--|-... .+.++.... .... .+...+..|+...-++
T Consensus 421 ~~~~p~ilv~NK~Dl~~~--~~~~~~~~~-~~~~------------------------------~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 421 MRDAIILIFANKQDLPDA--MKPHEIQEK-LGLT------------------------------RIRDRNWYVQPSCATS 467 (497)
T ss_dssp GTTCEEEEEEECCSSSSC--CCHHHHHHH-TTCT------------------------------TCCSSCEEEEECBTTT
T ss_pred cCCCcEEEEEECCCCCcC--CCHHHHHHH-hchh------------------------------hhhcCCeEEEEEECCC
Confidence 1235666665564332 233333221 0000 1111122343333332
Q ss_pred cchhhchHHHHHHHHHHHHHHHHcCCCCCChHH
Q 036659 180 KDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDI 212 (300)
Q Consensus 180 ~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~ 212 (300)
..-|.+|++.|-+.+.+....++|.++
T Consensus 468 ------g~gi~~l~~~l~~~~~~~~~~~~~~~~ 494 (497)
T 3lvq_E 468 ------GDGLYEGLTWLTSNYKSKLAAALEHHH 494 (497)
T ss_dssp ------TBTHHHHHHHHHHHCC-----------
T ss_pred ------CCCHHHHHHHHHHHHHhcCCCCCcccc
Confidence 247899999999888888777777765
No 124
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.08 E-value=2.8 Score=33.05 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=26.7
Q ss_pred EEEEEeCCCCcccCcccCCCCCCh----HHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGS----KFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~----e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
.+.++||| |+.+...-+ +.....+...+.-..+|.++++.|+...
T Consensus 45 ~~~l~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~ 93 (190)
T 2cxx_A 45 NHKIIDMP-------GFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGK 93 (190)
T ss_dssp TEEEEECC-------CBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETT
T ss_pred CEEEEECC-------CccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcch
Confidence 68899999 765544322 2233333333322256788888888765
No 125
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=89.05 E-value=1.5 Score=44.51 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=36.0
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHH-HhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIV-TCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTL 96 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~-~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~l 96 (300)
.|..+.+|||| |+++.......-.-++- -++.+++ +||+-..+ .+++.+...+..+..+
T Consensus 89 ~~~~i~LiDTp-------Gi~~~~~~~~~~~~~~fala~llss-----~lv~n~~~-~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 89 PGHILVLLDTE-------GLGDVEKGDNQNDSWIFALAVLLSS-----TFVYNSIG-TINQQAMDQLYYVTEL 148 (592)
T ss_dssp TTCEEEEEEEC-------CBCCGGGCCCTTHHHHHHHHHHHCS-----EEEEEEES-CSSHHHHHTTHHHHTH
T ss_pred CCceEEEecCC-------CcCcccccchhHHHHHHHHHHHhcC-----eEEEECCC-CccHHHHHHHHHHHHH
Confidence 57899999999 88876542111122322 2333444 44444445 8999998887765544
No 126
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.02 E-value=2.9 Score=31.95 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=38.7
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y 104 (300)
+..+.++||| |.-+... +.. ..+ .+.+++++|+.+..+-|-++ ...+..+...... .-.-
T Consensus 50 ~~~~~l~D~~-------G~~~~~~----~~~---~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p 110 (167)
T 1c1y_A 50 QCMLEILDTA-------GTEQFTA----MRD---LYM----KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVP 110 (167)
T ss_dssp EEEEEEEEEC-------SSCSSTT----HHH---HHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCC
T ss_pred EEEEEEEECC-------ChHHHHH----HHH---HHh----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCc
Confidence 3478899999 7443321 111 111 24789999999874332222 2223333333221 1234
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
.+||+|.-|...
T Consensus 111 iilv~nK~Dl~~ 122 (167)
T 1c1y_A 111 MILVGNKCDLED 122 (167)
T ss_dssp EEEEEECTTCGG
T ss_pred EEEEEECccccc
Confidence 688888877544
No 127
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.47 E-value=0.93 Score=36.89 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=37.2
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhch
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~ 99 (300)
.++| ..+.++||| |.-+. ..+ ...++ .+.+++|+|+.+..+.+-++. ..+..+......
T Consensus 71 ~~~~~~~~l~i~Dt~-------G~~~~----~~~---~~~~~----~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~ 132 (199)
T 2p5s_A 71 IVDGERTVLQLWDTA-------GQERF----RSI---AKSYF----RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE 132 (199)
T ss_dssp EETTEEEEEEEEECT-------TCTTC----HHH---HHHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC--
T ss_pred EECCEEEEEEEEECC-------CCcch----hhh---HHHHH----hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC
Confidence 4455 468999999 74321 111 22222 357899999998744333321 122223222222
Q ss_pred hhhcceEEEEEcCCC
Q 036659 100 NVFDYMIVVFTGGDE 114 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~ 114 (300)
-.-+|||.|--|-
T Consensus 133 --~~piilv~NK~Dl 145 (199)
T 2p5s_A 133 --TVPIMLVGNKADI 145 (199)
T ss_dssp ---CCEEEEEECGGG
T ss_pred --CCCEEEEEECccc
Confidence 1246777776664
No 128
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.42 E-value=8.7 Score=31.32 Aligned_cols=74 Identities=20% Similarity=0.113 Sum_probs=41.6
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHHhc
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSWQTLFG 98 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE--~~al~~lq~lFG 98 (300)
.++|. .+.++||| |.-+... .......+.|++|+|+.+..+-+-++ ...+..+....
T Consensus 67 ~~~~~~~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~- 127 (207)
T 2fv8_A 67 EVDGKQVELALWDTA-------GQEDYDR-----------LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC- 127 (207)
T ss_dssp EETTEEEEEEEEECT-------TCTTCTT-----------TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-
T ss_pred EECCEEEEEEEEECC-------CcHHHHH-----------HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-
Confidence 45664 68899999 7433221 11223468899999999874322222 22233333321
Q ss_pred hhhhcceEEEEEcCCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le~ 117 (300)
+ -.-+|||.|--|....
T Consensus 128 ~--~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 128 P--NVPIILVANKKDLRSD 144 (207)
T ss_dssp T--TCCEEEEEECGGGGGC
T ss_pred C--CCCEEEEEEchhhhcc
Confidence 1 2357888887775543
No 129
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=88.29 E-value=0.21 Score=49.61 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=49.6
Q ss_pred EEEEEEeCCCCcccCcccCCCCCCh--HH--HHHHHHHhhccCCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHHhchhh
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGS--KF--VGKEIVTCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~--e~--v~kEI~~ci~l~~pGpHA~LLV~~v~~-rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++|||| |+.+..... .. ....+...+ .+.|++|+|+.+.. .+++++...++.+.. .
T Consensus 154 ~~l~lIDTP-------G~~~~~~~~~~~~~~f~~~~~~~l----~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~ 217 (550)
T 2qpt_A 154 ESISIIDTP-------GILSGAKQRVSRGYDFPAVLRWFA----ERVDLIILLFDAHKLEISDEFSEAIGALRG-----H 217 (550)
T ss_dssp HHCEEEECC-------CBCC-------CCSCHHHHHHHHH----HHCSEEEEEEETTSCCCCHHHHHHHHHTTT-----C
T ss_pred CCEEEEECc-------CCCCcchhHHHHHhhHHHHHHHHH----HhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-----c
Confidence 368999999 877532110 00 111122222 36789999999974 368887777666542 2
Q ss_pred hcceEEEEEcCCCCCCCcccHHHhhh
Q 036659 102 FDYMIVVFTGGDELEDNDETLEDYLG 127 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le~~~~tledyl~ 127 (300)
-..+|||++--|.+.. ..+...+.
T Consensus 218 ~~pvilVlNK~Dl~~~--~el~~~~~ 241 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET--QQLMRVYG 241 (550)
T ss_dssp GGGEEEEEECGGGSCH--HHHHHHHH
T ss_pred CCCEEEEEECCCccCH--HHHHHHHH
Confidence 2458899998887754 34555443
No 130
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.21 E-value=7.5 Score=29.96 Aligned_cols=78 Identities=17% Similarity=0.055 Sum_probs=37.8
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhc
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG 98 (300)
..++|. .+.++||| |.-... . ..+. .....+.|++++|+.+..+-|-+... .+..+.....
T Consensus 45 ~~~~~~~~~~~~~D~~-------g~~~~~--~----~~~~---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~ 108 (175)
T 2nzj_A 45 LTVDGEDTTLVVVDTW-------EAEKLD--K----SWSQ---ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ 108 (175)
T ss_dssp EEETTEEEEEEEECCC--------------------CHHH---HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-
T ss_pred EEECCEEEEEEEEecC-------CCCccc--h----hhhH---HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc
Confidence 456665 67899999 653311 0 1111 12345789999999997433322211 1122222211
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
. .-.-+|||.|--|-..
T Consensus 109 ~-~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 109 A-DHVPIILVGNKADLAR 125 (175)
T ss_dssp ----CCEEEEEECTTCTT
T ss_pred c-CCCCEEEEEEChhhcc
Confidence 1 1234678888777544
No 131
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=88.17 E-value=1.7 Score=44.15 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=50.0
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al 90 (300)
++|-.+... +..+++..+++|||| |..|+ ..+..+++. ..+++|+|+......+.+....+
T Consensus 62 giTi~~~~~-~~~~~~~~i~liDTP-------G~~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~ 122 (691)
T 1dar_A 62 GITITAAVT-TCFWKDHRINIIDTP-------GHVDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVW 122 (691)
T ss_dssp -----CCEE-EEEETTEEEEEECCC-------SSTTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHH
T ss_pred ccccccceE-EEEECCeEEEEEECc-------Cccch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHH
Confidence 344443333 346789999999999 87664 234555554 46799999999877887776666
Q ss_pred HHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 91 HSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 91 ~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
..+.. ++ .-.||+.+--|...
T Consensus 123 ~~~~~-~~----~p~ivviNKiD~~~ 143 (691)
T 1dar_A 123 RQAEK-YK----VPRIAFANKMDKTG 143 (691)
T ss_dssp HHHHH-TT----CCEEEEEECTTSTT
T ss_pred HHHHH-cC----CCEEEEEECCCccc
Confidence 55433 11 23556666666554
No 132
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=88.12 E-value=0.85 Score=42.64 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=47.1
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+++.+++|||| |.-++ .+.....+ .+.+++|+|+.+....+.+....+..+.. .| ..
T Consensus 72 ~~~~~~~iiDtp-------G~~~f-------~~~~~~~~----~~aD~~ilVvda~~g~~~qt~~~l~~~~~-~~---ip 129 (405)
T 2c78_A 72 TAKRHYSHVDCP-------GHADY-------IKNMITGA----AQMDGAILVVSAADGPMPQTREHILLARQ-VG---VP 129 (405)
T ss_dssp CSSCEEEEEECC-------CSGGG-------HHHHHHHH----TTCSSEEEEEETTTCCCHHHHHHHHHHHH-TT---CC
T ss_pred cCCeEEEEEECC-------ChHHH-------HHHHHHHH----HHCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CC
Confidence 457899999999 75442 23333333 37889999999976777766665554433 22 34
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
++||+.+--|...
T Consensus 130 ~iivviNK~Dl~~ 142 (405)
T 2c78_A 130 YIVVFMNKVDMVD 142 (405)
T ss_dssp CEEEEEECGGGCC
T ss_pred EEEEEEECccccC
Confidence 5778888777553
No 133
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.02 E-value=4.2 Score=31.23 Aligned_cols=50 Identities=22% Similarity=0.043 Sum_probs=24.7
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch--hhhcceEEEEEcCCCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK--NVFDYMIVVFTGGDELED 117 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~--~i~~y~IVlFT~gD~Le~ 117 (300)
..+.|++++|+.+..+-|-++ ...++..+... ..-.-.|||.|--|-...
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKGSFEK--ASELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHH--HHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred hhhCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 367899999999974322221 11222222211 111346778887775543
No 134
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.99 E-value=0.69 Score=38.02 Aligned_cols=75 Identities=1% Similarity=0.009 Sum_probs=43.3
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC---CCCCHHHHHHHHHHHHHhchhh
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR---SRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~---~rfT~EE~~al~~lq~lFG~~i 101 (300)
.+..+.++||| |.-+.. ..+...+.-..+++|++|+|+.+. ..|+.- ...+..++....
T Consensus 53 ~~~~~~l~Dt~-------G~~~~~-------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~----~~~~~~~~~~~~ 114 (218)
T 1nrj_B 53 DGSGVTLVDFP-------GHVKLR-------YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT----AEFLVDILSITE 114 (218)
T ss_dssp GGSSCEEEECC-------CCGGGT-------HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHH----HHHHHHHHHHHH
T ss_pred eCceEEEEECC-------CcHHHH-------HHHHHHHHhccccCCEEEEEEECCCChHHHHHH----HHHHHHHHhccc
Confidence 45678999999 763322 122222221124689999999987 344432 234444443321
Q ss_pred -----hcceEEEEEcCCCCCC
Q 036659 102 -----FDYMIVVFTGGDELED 117 (300)
Q Consensus 102 -----~~y~IVlFT~gD~Le~ 117 (300)
-...|||+|.-|....
T Consensus 115 ~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 115 SSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHSTTCCCEEEEEECTTSTTC
T ss_pred ccccCCCCEEEEEEchHhccc
Confidence 2347888888886654
No 135
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=87.51 E-value=2.4 Score=41.79 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=44.9
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..+++|||| |..|+. .+..+++ .+.+++|+|+.............+..+. ..++
T Consensus 77 ~~~~~~~i~liDTP-------G~~df~-------~~~~~~l----~~aD~~IlVvDa~~g~~~~t~~~~~~~~---~~~i 135 (529)
T 2h5e_A 77 FPYHDCLVNLLDTP-------GHEDFS-------EDTYRTL----TAVDCCLMVIDAAKGVEDRTRKLMEVTR---LRDT 135 (529)
T ss_dssp EEETTEEEEEECCC-------CSTTCC-------HHHHHGG----GGCSEEEEEEETTTCSCHHHHHHHHHHT---TTTC
T ss_pred EEECCeEEEEEECC-------CChhHH-------HHHHHHH----HHCCEEEEEEeCCccchHHHHHHHHHHH---HcCC
Confidence 35689999999999 876654 2344444 3788999999997666655444433322 1111
Q ss_pred hcceEEEEEcCCCCC
Q 036659 102 FDYMIVVFTGGDELE 116 (300)
Q Consensus 102 ~~y~IVlFT~gD~Le 116 (300)
-.||+.+--|...
T Consensus 136 --piivviNK~Dl~~ 148 (529)
T 2h5e_A 136 --PILTFMNKLDRDI 148 (529)
T ss_dssp --CEEEEEECTTSCC
T ss_pred --CEEEEEcCcCCcc
Confidence 2556666556443
No 136
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=87.44 E-value=2.8 Score=33.72 Aligned_cols=71 Identities=14% Similarity=-0.036 Sum_probs=38.1
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchh--hhc
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKN--VFD 103 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~--i~~ 103 (300)
..+.++||| |.-+.... ......+.|++|+|+.+..+.+-++. ..+..+....+.. .-.
T Consensus 57 ~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
T 1vg8_A 57 VTMQIWDTA-------GQERFQSL-----------GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118 (207)
T ss_dssp EEEEEEEEC-------SSGGGSCS-----------CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGS
T ss_pred EEEEEEeCC-------CcHHHHHh-----------HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 478999999 53221110 11123578999999998743332221 2222333333211 123
Q ss_pred ceEEEEEcCCCC
Q 036659 104 YMIVVFTGGDEL 115 (300)
Q Consensus 104 y~IVlFT~gD~L 115 (300)
..|||.|.-|..
T Consensus 119 piilv~nK~Dl~ 130 (207)
T 1vg8_A 119 PFVVLGNKIDLE 130 (207)
T ss_dssp CEEEEEECTTSS
T ss_pred cEEEEEECCCCc
Confidence 568888877754
No 137
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=87.42 E-value=3.6 Score=38.51 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=44.5
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+.+++|||| |- +...++. .-.....+++|||+.+...+ ..+....+..+. .+|. ..+
T Consensus 81 ~~i~iiDtP-------Gh-------~~f~~~~----~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~---~~i 138 (408)
T 1s0u_A 81 RRVSFVDSP-------GH-------ETLMATM----LSGASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGI---DKI 138 (408)
T ss_dssp EEEEEEECS-------SH-------HHHHHHH----HTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTC---CCE
T ss_pred cEEEEEECC-------CH-------HHHHHHH----HHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCC---CeE
Confidence 789999999 63 2222332 22345789999999998655 555555555443 3342 467
Q ss_pred EEEEEcCCCCCC
Q 036659 106 IVVFTGGDELED 117 (300)
Q Consensus 106 IVlFT~gD~Le~ 117 (300)
||+++--|....
T Consensus 139 ivv~NK~Dl~~~ 150 (408)
T 1s0u_A 139 IIVQNKIDLVDE 150 (408)
T ss_dssp EEEEECTTSSCT
T ss_pred EEEEEccCCCCH
Confidence 888888886543
No 138
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=87.12 E-value=1.4 Score=41.20 Aligned_cols=71 Identities=13% Similarity=0.167 Sum_probs=46.6
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+++.+++|||| |.-+ + .+.+.. ...+.+++|||+.+......+....+..+.. .| ..
T Consensus 63 ~~~~~~~iiDtp-------G~~~------f-~~~~~~----~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~---vp 120 (397)
T 1d2e_A 63 TAARHYAHTDCP-------GHAD------Y-VKNMIT----GTAPLDGCILVVAANDGPMPQTREHLLLARQ-IG---VE 120 (397)
T ss_dssp CSSCEEEEEECS-------SHHH------H-HHHHHH----TSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CC
T ss_pred cCCeEEEEEECC-------ChHH------H-HHHHHh----hHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC---CC
Confidence 357899999999 7432 2 233333 3458899999999986677666665544432 22 34
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
+.||+.+--|...
T Consensus 121 ~iivviNK~Dl~~ 133 (397)
T 1d2e_A 121 HVVVYVNKADAVQ 133 (397)
T ss_dssp CEEEEEECGGGCS
T ss_pred eEEEEEECcccCC
Confidence 5678888777553
No 139
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.03 E-value=4.9 Score=32.36 Aligned_cols=74 Identities=18% Similarity=0.033 Sum_probs=38.5
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhch
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGK 99 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~ 99 (300)
.+++ ..+.++||| |.-+ .... ..++ .+.+++++|+.+..+-|-++.. .+..+......
T Consensus 70 ~~~~~~~~~~l~Dt~-------G~~~----~~~~----~~~~----~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~ 130 (196)
T 2atv_A 70 TIDDEVVSMEILDTA-------GQED----TIQR----EGHM----RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP 130 (196)
T ss_dssp EETTEEEEEEEEECC-------CCCC----CHHH----HHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred EECCEEEEEEEEECC-------CCCc----ccch----hhhh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC
Confidence 4555 468899999 7544 1111 1122 2458999999987433322211 12223322211
Q ss_pred hhhcceEEEEEcCCCCC
Q 036659 100 NVFDYMIVVFTGGDELE 116 (300)
Q Consensus 100 ~i~~y~IVlFT~gD~Le 116 (300)
.-.-.|||.|--|...
T Consensus 131 -~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 131 -KNVTLILVGNKADLDH 146 (196)
T ss_dssp -SCCCEEEEEECGGGGG
T ss_pred -CCCcEEEEEECccccc
Confidence 1124677788777443
No 140
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=86.66 E-value=0.99 Score=36.73 Aligned_cols=73 Identities=16% Similarity=0.072 Sum_probs=35.8
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
.++| ..+.++||| |.-+.... ......+.|++++|+.+..+-|-++ ...++..+....
T Consensus 76 ~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~ 135 (199)
T 3l0i_B 76 ELDGKTIKLQIWDTA-------GQERFRTI-----------TSSYYRGAHGIIVVYDVTDQESFNN--VKQWLQEIDRYA 135 (199)
T ss_dssp EETTEEEEEEEECCT-------TCTTCCCC-----------SCC--CCCSEEEECC-CCCSHHHHH--HHHHHHHHHSCC
T ss_pred EECCEEEEEEEEECC-------CcHhHHHH-----------HHHHhhcCCEEEEEEECCCHHHHHH--HHHHHHHHHHhc
Confidence 4566 468899999 53222111 1223468899999999875433222 222333332221
Q ss_pred h-hcceEEEEEcCCCC
Q 036659 101 V-FDYMIVVFTGGDEL 115 (300)
Q Consensus 101 i-~~y~IVlFT~gD~L 115 (300)
. -.-+|||.|--|..
T Consensus 136 ~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 136 SENVNKLLVGNKCDLT 151 (199)
T ss_dssp -CCSEEEEC-CCSSCC
T ss_pred cCCCCEEEEEECccCC
Confidence 1 12345666655643
No 141
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=86.19 E-value=3.2 Score=39.89 Aligned_cols=72 Identities=8% Similarity=0.147 Sum_probs=44.5
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSWQT 95 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-------fT~EE~~al~~lq~ 95 (300)
...++.+++|||| |.-+ ..+.....+ .+.+++|||+.+... +.......+..+ .
T Consensus 107 ~~~~~~~~iiDTP-------G~~~-------f~~~~~~~~----~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~ 167 (483)
T 3p26_A 107 STHRANFTIVDAP-------GHRD-------FVPNAIMGI----SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-S 167 (483)
T ss_dssp ECSSCEEEEECCC-------CCGG-------GHHHHHHHH----TTCSEEEEEEECCC------CCCCHHHHHHHHHH-H
T ss_pred ecCCceEEEEECC-------CcHH-------HHHHHHHhh----hhCCEEEEEEECCCCccccccchhhhHHHHHHHH-H
Confidence 3568899999999 7522 233444443 468999999999743 333433333332 2
Q ss_pred HhchhhhcceEEEEEcCCCCC
Q 036659 96 LFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 96 lFG~~i~~y~IVlFT~gD~Le 116 (300)
..| ...+||+.+--|-..
T Consensus 168 ~~~---~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 168 SLG---IHNLIIAMNKMDNVD 185 (483)
T ss_dssp HTT---CCCEEEEEECGGGGT
T ss_pred HcC---CCcEEEEEECcCccc
Confidence 333 346888888878554
No 142
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.18 E-value=12 Score=30.19 Aligned_cols=77 Identities=9% Similarity=0.137 Sum_probs=43.2
Q ss_pred EEEEEeCCCCcccCcccCCCCCCh---HHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGS---KFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~---e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+.++||| |+.+...+. +.....+...+. .....+++++|+.+....+..+......+ ..+| .-
T Consensus 73 ~~~l~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~----~~ 139 (210)
T 1pui_A 73 GKRLVDLP-------GYGYAEVPEEMKRKWQRALGEYLE-KRQSLQGLVVLMDIRHPLKDLDQQMIEWA-VDSN----IA 139 (210)
T ss_dssp TEEEEECC-------CCC------CCHHHHHHHHHHHHH-HCTTEEEEEEEEETTSCCCHHHHHHHHHH-HHTT----CC
T ss_pred CEEEEECc-------CCcccccCHHHHHHHHHHHHHHHH-hhhcccEEEEEEECCCCCchhHHHHHHHH-HHcC----CC
Confidence 57789999 654322211 122222322222 24678999999999867776655544443 3333 23
Q ss_pred eEEEEEcCCCCCC
Q 036659 105 MIVVFTGGDELED 117 (300)
Q Consensus 105 ~IVlFT~gD~Le~ 117 (300)
.++|.+.-|.+.+
T Consensus 140 ~~~v~nK~D~~s~ 152 (210)
T 1pui_A 140 VLVLLTKADKLAS 152 (210)
T ss_dssp EEEEEECGGGSCH
T ss_pred eEEEEecccCCCc
Confidence 5677888887754
No 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.16 E-value=5.8 Score=31.55 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=37.3
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~y~ 105 (300)
..+.++||| |.-+... .......+.|++|+|+.+..+-|-++ +...|...+-... -..+
T Consensus 55 ~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~i~~~~~~~pi 114 (184)
T 1m7b_A 55 IELSLWDTS-------GSPYYDN-----------VRPLSYPDSDAVLICFDISRPETLDS--VLKKWKGEIQEFCPNTKM 114 (184)
T ss_dssp EEEEEEEEC-------CSGGGTT-----------TGGGGCTTCSEEEEEEETTCHHHHHH--HHHTHHHHHHHHCTTCEE
T ss_pred EEEEEEECC-------CChhhhh-----------hHHhhcCCCcEEEEEEECCCHHHHHH--HHHHHHHHHHHHCCCCCE
Confidence 478899999 6422111 11224568999999999974322222 1122222221111 1346
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
|||.|.-|...
T Consensus 115 ilv~nK~Dl~~ 125 (184)
T 1m7b_A 115 LLVGCKSDLRT 125 (184)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEEcchhhc
Confidence 77777777543
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=86.02 E-value=0.79 Score=45.76 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=50.4
Q ss_pred CCCCccccCCCceee-CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659 10 FGAPKTAPLPPTIRI-QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA 88 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~-~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~ 88 (300)
.++|....... ..+ +|+.+++|||| |.-++... ......+.+++|||+.+....+.+...
T Consensus 35 ~giT~~i~~~~-v~~~~g~~i~~iDTP-------Ghe~f~~~-----------~~~~~~~aD~vILVVDa~dg~~~qt~e 95 (537)
T 3izy_P 35 GGITQHIGAFL-VSLPSGEKITFLDTP-------GHAAFSAM-----------RARGTQVTDIVILVVAADDGVMKQTVE 95 (537)
T ss_dssp CCBCCCTTSCC-BCSSCSSCCBCEECS-------SSCCTTTS-----------BBSSSBSBSSCEEECBSSSCCCHHHHH
T ss_pred CceeEEEeEEE-EEeCCCCEEEEEECC-------ChHHHHHH-----------HHHHHccCCEEEEEEECCCCccHHHHH
Confidence 45566555443 233 67899999999 64332211 122346789999999998778877666
Q ss_pred HHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 89 ALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 89 al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
.+..+.. .++ -+||+.+--|..
T Consensus 96 ~l~~~~~---~~v--PiIVViNKiDl~ 117 (537)
T 3izy_P 96 SIQHAKD---AHV--PIVLAINKCDKA 117 (537)
T ss_dssp HHHHHHT---TTC--CEEECCBSGGGT
T ss_pred HHHHHHH---cCC--cEEEEEeccccc
Confidence 6655443 222 356666665643
No 145
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.79 E-value=1.6 Score=43.19 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=46.8
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+++|||| |.... .+.+..|+....... .||.+|+|+......+ ++... ..|.+. ...
T Consensus 182 ~~~DvvIIDTp-------G~~~~---~~~l~~el~~~~~~i--~pd~vllVvDa~~g~~-----~~~~a-~~~~~~-~~i 242 (504)
T 2j37_W 182 ENFEIIIVDTS-------GRHKQ---EDSLFEEMLQVANAI--QPDNIVYVMDASIGQA-----CEAQA-KAFKDK-VDV 242 (504)
T ss_dssp TTCCEEEEEEC-------CCCTT---CHHHHHHHHHHHHHH--CCSEEEEEEETTCCTT-----HHHHH-HHHHHH-HCC
T ss_pred CCCcEEEEeCC-------CCccc---chhHHHHHHHHHhhh--cCceEEEEEecccccc-----HHHHH-HHHHhh-cCc
Confidence 67899999999 76653 234445555443322 6889999999863322 23222 345553 555
Q ss_pred eEEEEEcCCCCCC
Q 036659 105 MIVVFTGGDELED 117 (300)
Q Consensus 105 ~IVlFT~gD~Le~ 117 (300)
.+||+|.-|....
T Consensus 243 ~gvVlNK~D~~~~ 255 (504)
T 2j37_W 243 ASVIVTKLDGHAK 255 (504)
T ss_dssp CCEEEECTTSCCC
T ss_pred eEEEEeCCccccc
Confidence 7899998886643
No 146
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.47 E-value=7.9 Score=32.04 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=26.9
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR 81 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r 81 (300)
..++|. .+.++||| |.-. + .........+.+++++|+.+..+
T Consensus 68 ~~~~~~~~~l~l~Dt~-------G~~~------~-----~~~~~~~~~~~d~~i~v~D~~~~ 111 (201)
T 2ew1_A 68 VEINGEKVKLQIWDTA-------GQER------F-----RSITQSYYRSANALILTYDITCE 111 (201)
T ss_dssp EEETTEEEEEEEEEEC-------CSGG------G-----HHHHGGGSTTCSEEEEEEETTCH
T ss_pred EEECCEEEEEEEEECC-------CcHH------H-----HHHHHHHHhcCCEEEEEEECCCH
Confidence 346664 78899999 6311 1 11122345688999999998743
No 147
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=84.48 E-value=4 Score=33.00 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=24.8
Q ss_pred ceeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659 21 TIRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR 81 (300)
Q Consensus 21 t~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r 81 (300)
+..++|.. +.++||| |.-... . ..+.|++++|+.+..+
T Consensus 59 ~~~~~~~~~~l~i~Dt~-------G~~~~~------------~----~~~~~~~i~v~d~~~~ 98 (184)
T 3ihw_A 59 EIVVDGQSYLLLIRDEG-------GPPELQ------------F----AAWVDAVVFVFSLEDE 98 (184)
T ss_dssp EEEETTEEEEEEEEECS-------SSCCHH------------H----HHHCSEEEEEEETTCH
T ss_pred EEEECCEEEEEEEEECC-------CChhhh------------e----ecCCCEEEEEEECcCH
Confidence 35677854 5669999 643221 1 1247899999999743
No 148
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=84.16 E-value=2.6 Score=42.30 Aligned_cols=83 Identities=10% Similarity=0.135 Sum_probs=49.8
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-------CC
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-------FS 83 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-------fT 83 (300)
|+|...... .....++.+++|||| |.-+ ..+-+.....+.+++|+|+.+... +.
T Consensus 230 GiTid~~~~-~~~~~~~~~~iiDTP-------G~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~ 290 (611)
T 3izq_1 230 GVTVSICTS-HFSTHRANFTIVDAP-------GHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLD 290 (611)
T ss_dssp TTCCSCSCC-EEECSSCEEEEEECC-------SSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTT
T ss_pred CeeEeeeeE-EEecCCceEEEEECC-------CCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhh
Confidence 455544433 245678899999999 7522 122333455689999999998621 22
Q ss_pred HHHHHHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 84 QEEEAALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 84 ~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
.+....+..+ ..+| ..++|||.+--|...
T Consensus 291 ~qt~e~l~~~-~~lg---i~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 291 GQTKEHMLLA-SSLG---IHNLIIAMNKMDNVD 319 (611)
T ss_dssp SHHHHHHHHH-HTTT---CCEEEEEEECTTTTT
T ss_pred hHHHHHHHHH-HHcC---CCeEEEEEecccccc
Confidence 3333333322 2233 356888899888664
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=83.61 E-value=11 Score=38.11 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=40.1
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI 106 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I 106 (300)
..+++|||| |.-|+ ..++.+.+.. .+++|||+.+....+.+....+.... ..++ -.|
T Consensus 71 ~~l~liDTP-------Gh~dF-------~~ev~~~l~~----aD~aILVVDa~~gv~~qt~~~~~~~~---~~~i--piI 127 (599)
T 3cb4_D 71 YQLNFIDTP-------GHVDF-------SYEVSRSLAA----CEGALLVVDAGQGVEAQTLANCYTAM---EMDL--EVV 127 (599)
T ss_dssp EEEEEEECC-------CCGGG-------HHHHHHHHHH----CSEEEEEEETTTCCCTHHHHHHHHHH---HTTC--EEE
T ss_pred EEEEEEECC-------CchHH-------HHHHHHHHHH----CCEEEEEEECCCCCCHHHHHHHHHHH---HCCC--CEE
Confidence 689999999 86553 2456666543 47899999987666655554443332 2222 245
Q ss_pred EEEEcCCCC
Q 036659 107 VVFTGGDEL 115 (300)
Q Consensus 107 VlFT~gD~L 115 (300)
|+.+--|..
T Consensus 128 vViNKiDl~ 136 (599)
T 3cb4_D 128 PVLNKIDLP 136 (599)
T ss_dssp EEEECTTST
T ss_pred EeeeccCcc
Confidence 555555543
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=83.39 E-value=2.6 Score=40.20 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=42.5
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC-------HHHHHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSWQT 95 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT-------~EE~~al~~lq~ 95 (300)
..+++.+++|||| |.-+ ..+.+... ..+.+++|||+.+....+ .+.+..+..+.
T Consensus 91 ~~~~~~~~iiDTP-------Gh~~-------f~~~~~~~----~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~- 151 (439)
T 3j2k_7 91 ETEKKHFTILDAP-------GHKS-------FVPNMIGG----ASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK- 151 (439)
T ss_pred ecCCeEEEEEECC-------ChHH-------HHHHHHhh----HhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-
Confidence 4578999999999 7422 22333322 347899999999875433 23333333322
Q ss_pred HhchhhhcceEEEEEcCCCC
Q 036659 96 LFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 96 lFG~~i~~y~IVlFT~gD~L 115 (300)
..| ..++||+.+--|..
T Consensus 152 ~~~---v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 152 TAG---VKHLIVLINKMDDP 168 (439)
T ss_pred HcC---CCeEEEEeecCCCc
Confidence 233 34678888877753
No 151
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=82.87 E-value=1 Score=37.14 Aligned_cols=74 Identities=20% Similarity=0.070 Sum_probs=39.9
Q ss_pred eeCCEEEE--EEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH--HHHHHHHHhc
Q 036659 23 RIQVVLEK--VIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA--ALHSWQTLFG 98 (300)
Q Consensus 23 ~~~Gr~v~--VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~--al~~lq~lFG 98 (300)
.++|..+. ++||| |.-+.. ........+.|++++|+.+..+-|-++.. .+..+....
T Consensus 72 ~~~~~~~~l~i~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~- 132 (204)
T 4gzl_A 72 MVDGKPVNLGLWDTA-------GLEDYD-----------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC- 132 (204)
T ss_dssp ECC-CEEEEEEEEEC-------CSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-
T ss_pred EECCEEEEEEEEECC-------CchhhH-----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-
Confidence 45565544 99999 652221 12233456899999999997443333321 222222222
Q ss_pred hhhhcceEEEEEcCCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le~ 117 (300)
.-.-+|||.|--|-...
T Consensus 133 --~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 133 --PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp --SSCCEEEEEECHHHHTC
T ss_pred --CCCCEEEEEechhhccc
Confidence 12346777776664443
No 152
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=82.25 E-value=13 Score=29.96 Aligned_cols=76 Identities=9% Similarity=-0.034 Sum_probs=44.4
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
+..++|..+.++||| |.-+.... ....-.+.|++++|+.+..+-|-++ ....+..+....
T Consensus 61 ~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~ 120 (190)
T 1m2o_B 61 ELAIGNIKFTTFDLG-------GHIQARRL-----------WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIA 120 (190)
T ss_dssp EEEETTEEEEEEECC-------CSGGGTTS-----------GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCG
T ss_pred EEEECCEEEEEEECC-------CCHHHHHH-----------HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcch
Confidence 356789999999999 65332211 1122358899999999975433332 223444444321
Q ss_pred --hhcceEEEEEcCCCCC
Q 036659 101 --VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 --i~~y~IVlFT~gD~Le 116 (300)
.-.-.|||.+--|...
T Consensus 121 ~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 121 ELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GGTTCCEEEEEECTTSTT
T ss_pred hhcCCCEEEEEECCCCcC
Confidence 1234677777767543
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=82.13 E-value=16 Score=36.96 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=33.6
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHH
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 92 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~ 92 (300)
..+++|||| |..|+ ..++.+.+. +.+++|||+.+....+.+....+..
T Consensus 73 ~~inliDTP-------Gh~dF-------~~ev~r~l~----~aD~aILVVDa~~gv~~qt~~~~~~ 120 (600)
T 2ywe_A 73 YKLHLIDTP-------GHVDF-------SYEVSRALA----ACEGALLLIDASQGIEAQTVANFWK 120 (600)
T ss_dssp EEEEEECCC-------CSGGG-------HHHHHHHHH----TCSEEEEEEETTTBCCHHHHHHHHH
T ss_pred EEEEEEECC-------CcHhH-------HHHHHHHHH----hCCEEEEEEECCCCccHHHHHHHHH
Confidence 689999999 87653 245666654 5589999999976776655544433
No 154
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.43 E-value=2.4 Score=38.99 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=47.0
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHh---hcc-CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTC---IGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~c---i~l-~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
.+..+.+|||| |.. ...+.+..|+.+. +.- .+.-||.+++|+... |. ..++...+ .|.+
T Consensus 185 ~~~dvvIiDtp-------g~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~-~~~~- 247 (306)
T 1vma_A 185 RNKDVVIIDTA-------GRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAK-IFKE- 247 (306)
T ss_dssp TTCSEEEEEEC-------CCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHH-HHHH-
T ss_pred cCCCEEEEECC-------Cch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHH-HHHh-
Confidence 46679999999 752 2344555555443 322 244599999999875 44 34555553 3444
Q ss_pred hhcceEEEEEcCCCCC
Q 036659 101 VFDYMIVVFTGGDELE 116 (300)
Q Consensus 101 i~~y~IVlFT~gD~Le 116 (300)
....+-||+|.-|.-.
T Consensus 248 ~~~i~gvVlTk~D~~~ 263 (306)
T 1vma_A 248 AVNVTGIILTKLDGTA 263 (306)
T ss_dssp HSCCCEEEEECGGGCS
T ss_pred cCCCCEEEEeCCCCcc
Confidence 3667788899877543
No 155
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=81.25 E-value=13 Score=30.74 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=37.0
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~y~ 105 (300)
..+.++||| |.-+... .......+.+++|+|+.+..+-|-++ +...|...+-... -.-.
T Consensus 76 ~~l~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~ilv~D~~~~~s~~~--~~~~~~~~i~~~~~~~pi 135 (205)
T 1gwn_A 76 IELSLWDTS-------GSPYYDN-----------VRPLSYPDSDAVLICFDISRPETLDS--VLKKWKGEIQEFCPNTKM 135 (205)
T ss_dssp EEEEEEEEC-------CSGGGTT-----------TGGGGCTTCSEEEEEEETTCHHHHHH--HHHTHHHHHHHHCTTCEE
T ss_pred EEEEEEeCC-------CcHhhhH-----------HHHhhccCCCEEEEEEECCCHHHHHH--HHHHHHHHHHHHCCCCCE
Confidence 478999999 6422111 11223468899999999874332222 1122222221111 1346
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
|||.|--|...
T Consensus 136 ilv~nK~Dl~~ 146 (205)
T 1gwn_A 136 LLVGCKSDLRT 146 (205)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEechhhcc
Confidence 77777777543
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=80.90 E-value=3.7 Score=38.85 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=42.9
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHH
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSWQ 94 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-------fT~EE~~al~~lq 94 (300)
..++++.+++|||| |.-+. ..+... ...+.+++|||+.+... +..+.+..+..+
T Consensus 79 ~~~~~~~~~iiDtp-------G~~~f-------~~~~~~----~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~- 139 (435)
T 1jny_A 79 FETKKYFFTIIDAP-------GHRDF-------VKNMIT----GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA- 139 (435)
T ss_dssp EECSSCEEEECCCS-------SSTTH-------HHHHHH----TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-
T ss_pred EecCCeEEEEEECC-------CcHHH-------HHHHHh----hhhhcCEEEEEEECCCCccccccccchHHHHHHHHH-
Confidence 45678899999999 75442 223333 34688999999998742 111222222211
Q ss_pred HHhchhhhcceEEEEEcCCCCC
Q 036659 95 TLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 95 ~lFG~~i~~y~IVlFT~gD~Le 116 (300)
..+| ..++||+.+--|...
T Consensus 140 ~~~~---~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 140 KTMG---LDQLIVAVNKMDLTE 158 (435)
T ss_dssp HHTT---CTTCEEEEECGGGSS
T ss_pred HHcC---CCeEEEEEEcccCCC
Confidence 2223 246778888777554
No 157
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=80.80 E-value=1.6 Score=44.35 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=33.8
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHH
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSW 93 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~l 93 (300)
++..||+|||| |-.|++ -|+.+++.+|. ..|||+.+-.-....-+..++..
T Consensus 83 ~~~~iNlIDTP-------GHvDF~-------~Ev~~aLr~~D----gavlvVDaveGV~~qT~~v~~~a 133 (709)
T 4fn5_A 83 DNYRVNVIDTP-------GHVDFT-------IEVERSLRVLD----GAVVVFCGTSGVEPQSETVWRQA 133 (709)
T ss_dssp CCEEEEEECCC-------SCTTCH-------HHHHHHHHHCS----EEEEEEETTTCSCHHHHHHHHHH
T ss_pred CCEEEEEEeCC-------CCcccH-------HHHHHHHHHhC----eEEEEEECCCCCchhHHHHHHHH
Confidence 46899999999 888874 57777887653 44555555446665555544443
No 158
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=80.78 E-value=20 Score=28.68 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=23.2
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS 80 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~ 80 (300)
.+++. .+.++||| |.-.... + ...+ .+.|++++|+.+.+
T Consensus 63 ~~~~~~~~l~i~Dt~-------G~~~~~~----~----~~~~----~~~~~~ilv~d~~~ 103 (187)
T 3c5c_A 63 TVDHQPVHLRVMDTA-------DLDTPRN----C----ERYL----NWAHAFLVVYSVDS 103 (187)
T ss_dssp EETTEEEEEEEEECC-------C---CCC----T----HHHH----TTCSEEEEEEETTC
T ss_pred EECCEEEEEEEEECC-------CCCcchh----H----HHHH----hhCCEEEEEEECCC
Confidence 34554 67789999 6433221 1 1122 36799999999974
No 159
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=80.34 E-value=4.7 Score=35.98 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=28.6
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
+..+.++||| |..+.+..+. ...+.+... ...+++++++|+.+.
T Consensus 48 ~~~l~l~Dtp-------G~~~~~~~~~--~e~v~~~~~-~~~~~d~vi~V~D~t 91 (272)
T 3b1v_A 48 NKDLEIQDLP-------GIYSMSPYSP--EAKVARDYL-LSQRADSILNVVDAT 91 (272)
T ss_dssp CTTEEEEECC-------CCSCSSCSSH--HHHHHHHHH-HTTCCSEEEEEEEGG
T ss_pred CCeEEEEECC-------CcCccCCCCh--HHHHHHHHH-hcCCCCEEEEEecCC
Confidence 6789999999 8776543321 122333222 235799999999986
No 160
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=79.41 E-value=2.3 Score=42.73 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=22.0
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhcc
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGM 64 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l 64 (300)
..|+|..+|+|||| |-.|++ .|+.+++..
T Consensus 62 ~~~~~~~iNlIDTP-------GH~DF~-------~Ev~raL~~ 90 (638)
T 3j25_A 62 FQWENTKVNIIDTP-------GHMDFL-------AEVYRSLSV 90 (638)
T ss_dssp CBCSSCBCCCEECC-------CSSSTH-------HHHHHHHTT
T ss_pred EEECCEEEEEEECC-------CcHHHH-------HHHHHHHHH
Confidence 46889999999999 877764 455666654
No 161
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=79.40 E-value=19 Score=27.55 Aligned_cols=46 Identities=26% Similarity=0.089 Sum_probs=25.1
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--hcceEEEEEcCCCC
Q 036659 68 GIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--FDYMIVVFTGGDEL 115 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~~y~IVlFT~gD~L 115 (300)
+.|++++|+.+..+-|-+ ..-.++..+..... -.-.|||.|--|-.
T Consensus 75 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 75 TGDAFLIVFSVTDRRSFS--KVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp HCSEEEEEEETTCHHHHH--THHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred cCCEEEEEEECCChHHHH--HHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 579999999997422211 12233333333221 23467777777744
No 162
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=78.97 E-value=2.4 Score=33.20 Aligned_cols=73 Identities=16% Similarity=0.055 Sum_probs=36.3
Q ss_pred eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhc
Q 036659 23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFG 98 (300)
Q Consensus 23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG 98 (300)
.++|. .+.++||| |.-.... .......+.|++++|+.+..+-|-++. ..+..+....+
T Consensus 50 ~~~~~~~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 111 (182)
T 3bwd_D 50 VVNGATVNLGLWDTA-------GQEDYNR-----------LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP 111 (182)
T ss_dssp C-------CEEECCC-------C-CTTTT-----------TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred EECCEEEEEEEEECC-------CChhhhh-----------hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 34554 45599999 6433221 112234688999999998743232221 12233333221
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
-..+|||.|.-|...
T Consensus 112 ---~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 112 ---GVPIVLVGTKLDLRD 126 (182)
T ss_dssp ---TCCEEEEEECHHHHT
T ss_pred ---CCCEEEEEechhhhc
Confidence 235677778777443
No 163
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=80.19 E-value=0.4 Score=39.14 Aligned_cols=48 Identities=21% Similarity=0.021 Sum_probs=27.2
Q ss_pred CCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
..+.+++++|+.+..+-|-++. ..+..+....+ -..+|||+|--|-..
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 4578999999998754433332 23333333222 234677777667543
No 164
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=78.75 E-value=3.6 Score=35.71 Aligned_cols=74 Identities=18% Similarity=0.045 Sum_probs=41.5
Q ss_pred eeeCCEEEE--EEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH--HHHHHHHHh
Q 036659 22 IRIQVVLEK--VIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA--ALHSWQTLF 97 (300)
Q Consensus 22 ~~~~Gr~v~--VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~--al~~lq~lF 97 (300)
..++|..+. ++||| |.-+... .......+.|++++|+.+..+.|-++.. -+..+....
T Consensus 196 ~~~~~~~~~~~l~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 257 (332)
T 2wkq_A 196 VMVDGKPVNLGLWDTA-------GLEDYDR-----------LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257 (332)
T ss_dssp EEETTEEEEEEEEEEC-------CCGGGTT-----------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred EEECCEEEEEEEEeCC-------CchhhhH-----------HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC
Confidence 346777655 99999 6433221 1122346889999999997444433321 223333322
Q ss_pred chhhhcceEEEEEcCCCCC
Q 036659 98 GKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 98 G~~i~~y~IVlFT~gD~Le 116 (300)
+ -.-+|||.|--|-..
T Consensus 258 ~---~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 258 P---NTPIILVGTKLDLRD 273 (332)
T ss_dssp T---TSCEEEEEECHHHHT
T ss_pred C---CCcEEEEEEchhccc
Confidence 2 235677777767443
No 165
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=78.55 E-value=10 Score=35.62 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=41.6
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC---------HHHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS---------QEEEAALHSW 93 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT---------~EE~~al~~l 93 (300)
.+++..+.++||| |--. ..+-...+-.|.||||+|+.+. .|. .-=..++..+
T Consensus 197 ~~~~~~l~i~Dt~-------Gq~~-----------~r~~w~~~f~~~~~iIfv~dls-~~dq~l~ed~~~n~~~es~~~~ 257 (362)
T 1zcb_A 197 EIKNVPFKMVDVG-------GQRS-----------ERKRWFECFDSVTSILFLVSSS-EFDQVLMEDRQTNRLTESLNIF 257 (362)
T ss_dssp EETTEEEEEEEEC-------C------------------CTTSCTTCCEEEEEEETT-CTTCEETTEEEEEHHHHHHHHH
T ss_pred eeCCeEEEEEecc-------chhh-----------hhhhHHHHhCCCCEEEEEEECc-cccccccccccccHHHHHHHHH
Confidence 4578899999999 5311 1111234567999999999997 542 1223344455
Q ss_pred HHHhchhhh-cceEEEEEcCCCC
Q 036659 94 QTLFGKNVF-DYMIVVFTGGDEL 115 (300)
Q Consensus 94 q~lFG~~i~-~y~IVlFT~gD~L 115 (300)
..+.....+ +-.||||-++-+|
T Consensus 258 ~~i~~~~~~~~~piILv~NK~DL 280 (362)
T 1zcb_A 258 ETIVNNRVFSNVSIILFLNKTDL 280 (362)
T ss_dssp HHHHTCGGGTTSEEEEEEECHHH
T ss_pred HHHhcchhhCCCCEEEEEEChhh
Confidence 555443332 3346666555434
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=78.16 E-value=2.7 Score=40.30 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=41.1
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCH-------HHHHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSWQT 95 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~-------EE~~al~~lq~ 95 (300)
..+++.+++|||| |.- ++ .+.... ...+.|++|||+.+.....+ +....+..+ .
T Consensus 81 ~~~~~~~~iiDtP-------Gh~------~f-~~~~~~----~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~ 141 (458)
T 1f60_A 81 ETPKYQVTVIDAP-------GHR------DF-IKNMIT----GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-F 141 (458)
T ss_dssp ECSSEEEEEEECC-------CCT------TH-HHHHHH----SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-H
T ss_pred ecCCceEEEEECC-------CcH------HH-HHHHHh----hhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-H
Confidence 4568899999999 732 22 233322 34589999999998632111 222222211 1
Q ss_pred HhchhhhcceEEEEEcCCCC
Q 036659 96 LFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 96 lFG~~i~~y~IVlFT~gD~L 115 (300)
..| ..++||+.+--|..
T Consensus 142 ~~~---v~~iivviNK~Dl~ 158 (458)
T 1f60_A 142 TLG---VRQLIVAVNKMDSV 158 (458)
T ss_dssp HTT---CCEEEEEEECGGGG
T ss_pred HcC---CCeEEEEEEccccc
Confidence 222 34678888877765
No 167
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=77.88 E-value=10 Score=29.48 Aligned_cols=70 Identities=19% Similarity=0.070 Sum_probs=37.0
Q ss_pred eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHHhc
Q 036659 22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSWQTLFG 98 (300)
Q Consensus 22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a-l~~lq~lFG 98 (300)
..++|. .+.++||| |.-. .. . ..+.|++|+|+.+..+-|-++... ++.+..+..
T Consensus 47 ~~~~~~~~~l~i~Dt~-------G~~~----~~--------~----~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~ 103 (178)
T 2iwr_A 47 MLVDGQTHLVLIREEA-------GAPD----AK--------F----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRG 103 (178)
T ss_dssp EEETTEEEEEEEEECS-------SSCC----HH--------H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCEEEEEEEEECC-------CCch----hH--------H----HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHh
Confidence 345664 56789999 7422 11 1 135799999999974433333222 122333322
Q ss_pred hh-hhcceEEEEEcCCC
Q 036659 99 KN-VFDYMIVVFTGGDE 114 (300)
Q Consensus 99 ~~-i~~y~IVlFT~gD~ 114 (300)
.. .-.-+|||.|--|-
T Consensus 104 ~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 104 EGRGGLALALVGTQDRI 120 (178)
T ss_dssp SSSCCCEEEEEEECTTC
T ss_pred cCCCCCCEEEEEECccc
Confidence 11 01245666776664
No 168
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=77.67 E-value=4.7 Score=38.82 Aligned_cols=73 Identities=14% Similarity=0.004 Sum_probs=47.5
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh-c
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF-D 103 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~-~ 103 (300)
++..+.+|||| |.... ...+..++.....+ -.|+.+|+|+...... .++... ..|.+. . .
T Consensus 179 ~~~D~vIIDT~-------G~~~~---~~~l~~~l~~i~~~--~~~d~vllVvda~~g~-----~~~~~~-~~~~~~-~~~ 239 (432)
T 2v3c_C 179 KKADVLIIDTA-------GRHKE---EKGLLEEMKQIKEI--TNPDEIILVIDGTIGQ-----QAGIQA-KAFKEA-VGE 239 (432)
T ss_dssp SSCSEEEEECC-------CSCSS---HHHHHHHHHHTTSS--SCCSEEEEEEEGGGGG-----GHHHHH-HHHHTT-SCS
T ss_pred hCCCEEEEcCC-------CCccc---cHHHHHHHHHHHHH--hcCcceeEEeeccccH-----HHHHHH-HHHhhc-ccC
Confidence 67789999999 87652 34566677654333 2689999999865221 233333 456554 4 5
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
.+.||+|.-|...
T Consensus 240 i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 240 IGSIIVTKLDGSA 252 (432)
T ss_dssp CEEEEEECSSSCS
T ss_pred CeEEEEeCCCCcc
Confidence 6899999877643
No 169
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=77.60 E-value=6.7 Score=31.84 Aligned_cols=73 Identities=19% Similarity=0.081 Sum_probs=39.1
Q ss_pred eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhc
Q 036659 23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFG 98 (300)
Q Consensus 23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG 98 (300)
.++| ..+.++||| |.-+.... ......+.|++|+|+.+..+-|-++. ..+..+....+
T Consensus 51 ~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 112 (212)
T 2j0v_A 51 AVDGQIVNLGLWDTA-------GQEDYSRL-----------RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP 112 (212)
T ss_dssp ECSSCEEEEEEECCC-------CCCCCCC-------------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred EECCEEEEEEEEECC-------CcHHHHHH-----------HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 3455 488999999 65332211 11234688999999998733222221 12222322221
Q ss_pred hhhhcceEEEEEcCCCCC
Q 036659 99 KNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 99 ~~i~~y~IVlFT~gD~Le 116 (300)
-.-.|||.|.-|...
T Consensus 113 ---~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 113 ---NVPIVLVGTKLDLRD 127 (212)
T ss_dssp ---TCCEEEEEECHHHHT
T ss_pred ---CCCEEEEEeCHHhhh
Confidence 234677777767443
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=77.59 E-value=2.5 Score=41.80 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=46.8
Q ss_pred CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659 10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89 (300)
Q Consensus 10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a 89 (300)
.++|...... ...++|+.++++||| |.-++... ......+.+++|||+.+......+....
T Consensus 35 ~GIT~~i~~~-~v~~~~~~i~~iDTP-------Ghe~f~~~-----------~~~~~~~aD~aILVVda~~g~~~qT~e~ 95 (501)
T 1zo1_I 35 GGITQHIGAY-HVETENGMITFLDTP-------GHAAFTSM-----------RARGAQATDIVVLVVAADDGVMPQTIEA 95 (501)
T ss_dssp CCCCCCSSCC-CCCTTSSCCCEECCC-------TTTCCTTS-----------BCSSSBSCSSEEEEEETTTBSCTTTHHH
T ss_pred CCeeEeEEEE-EEEECCEEEEEEECC-------CcHHHHHH-----------HHHHHhhCCEEEEEeecccCccHHHHHH
Confidence 3455554433 245678899999999 65443221 1223457788999999875444444444
Q ss_pred HHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 90 LHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 90 l~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
+..+.. .| + -+||+.+--|..
T Consensus 96 l~~~~~-~~--v--PiIVviNKiDl~ 116 (501)
T 1zo1_I 96 IQHAKA-AQ--V--PVVVAVNKIDKP 116 (501)
T ss_dssp HHHHHH-TT--C--CEEEEEECSSSS
T ss_pred HHHHHh-cC--c--eEEEEEEecccc
Confidence 433321 22 1 266666655643
No 171
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=77.40 E-value=17 Score=35.06 Aligned_cols=69 Identities=16% Similarity=0.035 Sum_probs=40.4
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+.++||| |.-......... -.+.+++|+|+.+. .+ +.-...+..+.... + -.-+
T Consensus 97 ~~~~~i~Dt~-------G~e~~~~~~~~~-----------l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~-~--~~pv 153 (535)
T 3dpu_A 97 ECLFHFWDFG-------GQEIMHASHQFF-----------MTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYG-G--KSPV 153 (535)
T ss_dssp TCEEEEECCC-------SCCTTTTTCHHH-----------HHSSEEEEEEECGG-GG-GGHHHHHHHHHHHS-S--SCCE
T ss_pred eEEEEEEECC-------cHHHHHHHHHHH-----------ccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhC-C--CCCE
Confidence 6899999999 632222211111 11488999999986 44 22233444444432 2 2457
Q ss_pred EEEEEcCCCCCC
Q 036659 106 IVVFTGGDELED 117 (300)
Q Consensus 106 IVlFT~gD~Le~ 117 (300)
|||.|.-|....
T Consensus 154 ilV~NK~Dl~~~ 165 (535)
T 3dpu_A 154 IVVMNKIDENPS 165 (535)
T ss_dssp EEEECCTTTCTT
T ss_pred EEEEECCCcccc
Confidence 888888886544
No 172
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=77.22 E-value=6.2 Score=31.42 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.6
Q ss_pred HHHHHHhcHHHHHHHHHHHHHH
Q 036659 260 AQLAQMKSNDEIRKLRENLERA 281 (300)
Q Consensus 260 ~~~~~~~~~~~i~~lre~le~~ 281 (300)
-..++..|+++|..||-+||..
T Consensus 66 h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 66 HRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 6677889999999999999864
No 173
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=76.94 E-value=9 Score=31.26 Aligned_cols=75 Identities=7% Similarity=-0.019 Sum_probs=41.6
Q ss_pred ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
+..++|..+.++||| |.-.... -......+.|++++|+.+..+-|-+ .+..++..+....
T Consensus 63 ~~~~~~~~l~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~--~~~~~~~~~~~~~ 122 (198)
T 1f6b_A 63 ELTIAGMTFTTFDLG-------GHIQARR-----------VWKNYLPAINGIVFLVDCADHERLL--ESKEELDSLMTDE 122 (198)
T ss_dssp EEEETTEEEEEEEEC-------C----CC-----------GGGGGGGGCSEEEEEEETTCGGGHH--HHHHHHHHHHTCG
T ss_pred EEEECCEEEEEEECC-------CcHhhHH-----------HHHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhCc
Confidence 456789999999999 6432221 1112234889999999987443322 2223444444321
Q ss_pred --hhcceEEEEEcCCCC
Q 036659 101 --VFDYMIVVFTGGDEL 115 (300)
Q Consensus 101 --i~~y~IVlFT~gD~L 115 (300)
.-.-.|||.+--|..
T Consensus 123 ~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 123 TIANVPILILGNKIDRP 139 (198)
T ss_dssp GGTTSCEEEEEECTTST
T ss_pred ccCCCcEEEEEECCCcc
Confidence 112356777766644
No 174
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=76.91 E-value=1.5 Score=40.94 Aligned_cols=75 Identities=7% Similarity=-0.016 Sum_probs=39.2
Q ss_pred EEEEeCCCCcccCcccCCCCCChH-HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEE
Q 036659 29 EKVIDTRWVRHAIARLFDFSAGSK-FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIV 107 (300)
Q Consensus 29 v~VIDTP~w~~~~~glfd~~~~~e-~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IV 107 (300)
+.+|||| |+++.+.-.+ ...+++..|+....+.|+.+ ++..+..........++. +-+. -..+++
T Consensus 213 ~~liDtP-------G~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~--~l~~~~~~~~g~l~~~d~---l~~~--~~~~~~ 278 (368)
T 3h2y_A 213 SSLYDTP-------GIINHHQMAHYVGKQSLKLITPTKEIKPMVF--QLNEEQTLFFSGLARFDY---VSGG--RRAFTC 278 (368)
T ss_dssp CEEEECC-------CBCCTTSGGGGSCHHHHHHHSCSSCCCCEEE--EECTTEEEEETTTEEEEE---EESS--SEEEEE
T ss_pred eEEEeCC-------CcCcHHHHHHHhhHHHHHHhccccccCceEE--EEcCCCEEEEcceEEEEE---ecCC--CceEEE
Confidence 8999999 9988753333 33456777776555555544 444321100000000111 1122 134688
Q ss_pred EEEcCCCCCC
Q 036659 108 VFTGGDELED 117 (300)
Q Consensus 108 lFT~gD~Le~ 117 (300)
+|+-.|.+..
T Consensus 279 v~nk~d~~~~ 288 (368)
T 3h2y_A 279 HFSNRLTIHR 288 (368)
T ss_dssp EECTTSCEEE
T ss_pred EecCcccccc
Confidence 8888887754
No 175
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=76.55 E-value=12 Score=38.18 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=40.7
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI 106 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I 106 (300)
..+++|||| |..|+. .++.+++. +.+++|+|+......+......+..... .| --.|
T Consensus 82 ~~i~liDTP-------G~~df~-------~~~~~~l~----~aD~aIlVvDa~~gv~~qt~~~~~~~~~-~~----ip~i 138 (704)
T 2rdo_7 82 HRINIIDTP-------GHVDFT-------IEVERSMR----VLDGAVMVYCAVGGVQPQSETVWRQANK-YK----VPRI 138 (704)
T ss_pred eeEEEEeCC-------CccchH-------HHHHHHHH----HCCEEEEEEeCCCCCcHHHHHHHHHHHH-cC----CCEE
Confidence 899999999 876642 34555554 4589999999875655544444433221 11 2345
Q ss_pred EEEEcCCCCC
Q 036659 107 VVFTGGDELE 116 (300)
Q Consensus 107 VlFT~gD~Le 116 (300)
|+.+--|...
T Consensus 139 lviNKiD~~~ 148 (704)
T 2rdo_7 139 AFVNKMDRMG 148 (704)
T ss_pred EEEeCCCccc
Confidence 5666556443
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=76.34 E-value=3.3 Score=38.18 Aligned_cols=74 Identities=22% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHh---hc-cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTC---IG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~c---i~-l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
++..+.+|||| |.... .+.+..|+... +. ..+.-||.+++|+... |. ..++...+. |.+.
T Consensus 190 ~~yD~VIIDTp-------g~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~---~~--~~~l~~~~~-~~~~ 253 (320)
T 1zu4_A 190 QNYDLLLIDTA-------GRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDAT---TG--QNGVIQAEE-FSKV 253 (320)
T ss_dssp TTCSEEEEECC-------CCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGG---GT--HHHHHHHHH-HTTT
T ss_pred cCCCEEEEcCC-------Ccccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---Cc--HHHHHHHHH-Hhhc
Confidence 56789999999 65542 23344454432 32 2344589999999875 22 456666654 6553
Q ss_pred hhcceEEEEEcCCCC
Q 036659 101 VFDYMIVVFTGGDEL 115 (300)
Q Consensus 101 i~~y~IVlFT~gD~L 115 (300)
...+=||+|.-|.-
T Consensus 254 -~~i~GvVltk~d~~ 267 (320)
T 1zu4_A 254 -ADVSGIILTKMDST 267 (320)
T ss_dssp -SCCCEEEEECGGGC
T ss_pred -CCCcEEEEeCCCCC
Confidence 45556788976643
No 177
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=76.22 E-value=4.8 Score=39.40 Aligned_cols=73 Identities=18% Similarity=0.058 Sum_probs=46.8
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
+|..+.+|||| |..+. .+....|+...... +.||.+|||+.... .+ .++... ..|.+ ...-
T Consensus 181 ~~~DvVIIDTa-------Grl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~--gq---~a~~~a-~~f~~-~~~i 241 (443)
T 3dm5_A 181 KGVDIIIVDTA-------GRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTI--GQ---QAYNQA-LAFKE-ATPI 241 (443)
T ss_dssp TTCSEEEEECC-------CCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGG--GG---GHHHHH-HHHHH-SCTT
T ss_pred CCCCEEEEECC-------Ccccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCC--ch---hHHHHH-HHHHh-hCCC
Confidence 46789999999 76543 24455666664433 35799999999762 22 223322 55554 3467
Q ss_pred eEEEEEcCCCCC
Q 036659 105 MIVVFTGGDELE 116 (300)
Q Consensus 105 ~IVlFT~gD~Le 116 (300)
+.||+|.-|.-.
T Consensus 242 ~gVIlTKlD~~~ 253 (443)
T 3dm5_A 242 GSIIVTKLDGSA 253 (443)
T ss_dssp EEEEEECCSSCS
T ss_pred eEEEEECCCCcc
Confidence 789999877543
No 178
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=75.71 E-value=6.1 Score=35.42 Aligned_cols=79 Identities=11% Similarity=0.014 Sum_probs=42.3
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHHhchhhhc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSWQTLFGKNVFD 103 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a-l~~lq~lFG~~i~~ 103 (300)
++..+.++||| |..+. ...-........-.+++++|+|+.+..+-|-++... ...+..+-...--.
T Consensus 50 ~~~~l~i~Dt~-------G~~~~------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~ 116 (307)
T 3r7w_A 50 GNMTLNLWDCG-------GQDVF------MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA 116 (307)
T ss_dssp TTEEEEEEEEC-------CSHHH------HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CceEEEEEECC-------CcHHH------hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCC
Confidence 56789999999 64321 110001111112258999999999986666555433 23333332211123
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
-++||.+--|...
T Consensus 117 piilv~NK~Dl~~ 129 (307)
T 3r7w_A 117 KIFVLLHKMDLVQ 129 (307)
T ss_dssp EEEEEEECGGGSC
T ss_pred eEEEEEecccccc
Confidence 4566666666443
No 179
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=75.13 E-value=5 Score=38.54 Aligned_cols=82 Identities=12% Similarity=0.078 Sum_probs=39.9
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-----C--
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-----S-- 83 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-----T-- 83 (300)
++|-..... ...++++.+++|||| |.-++. +.+. ....+.|++|||+.+.... .
T Consensus 106 giTi~~~~~-~~~~~~~~~~iiDtP-------Gh~~f~-------~~~~----~~~~~aD~~ilVvDa~~g~~e~sf~~~ 166 (467)
T 1r5b_A 106 GKTVEVGRA-YFETEHRRFSLLDAP-------GHKGYV-------TNMI----NGASQADIGVLVISARRGEFEAGFERG 166 (467)
T ss_dssp -------CC-EEECSSEEEEECCCC-------C----------------------TTSCSEEEEEEECSTTHHHHTTSTT
T ss_pred CceEEeeeE-EEecCCeEEEEEECC-------CcHHHH-------HHHH----hhcccCCEEEEEEeCCcCccccccCCC
Confidence 344443332 245679999999999 753321 2222 2345889999999987432 1
Q ss_pred HHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 84 QEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 84 ~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
.+.+..+..+ ...| ..++||+.+--|..
T Consensus 167 ~qt~e~l~~~-~~~~---vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 167 GQTREHAVLA-RTQG---INHLVVVINKMDEP 194 (467)
T ss_dssp CCHHHHHHHH-HHTT---CSSEEEEEECTTST
T ss_pred CcHHHHHHHH-HHcC---CCEEEEEEECccCC
Confidence 1222222221 2223 34678888877754
No 180
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=74.49 E-value=10 Score=35.41 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=42.0
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.++++.+++|||| |.-|+ .+++...+ .+.+++|||+. ......+.+..+..+ ..+| .
T Consensus 56 ~~~~~~i~iiDtP-------Gh~~f-------~~~~~~~~----~~aD~ailVvd-~~g~~~qt~e~~~~~-~~~~---i 112 (370)
T 2elf_A 56 DKEGRNMVFVDAH-------SYPKT-------LKSLITAL----NISDIAVLCIP-PQGLDAHTGECIIAL-DLLG---F 112 (370)
T ss_dssp CSSSSEEEEEECT-------TTTTC-------HHHHHHHH----HTCSEEEEEEC-TTCCCHHHHHHHHHH-HHTT---C
T ss_pred ecCCeEEEEEECC-------ChHHH-------HHHHHHHH----HHCCEEEEEEc-CCCCcHHHHHHHHHH-HHcC---C
Confidence 3567889999999 76543 23333333 47789999998 544444444444333 2344 3
Q ss_pred cceEEEEEcCCCC
Q 036659 103 DYMIVVFTGGDEL 115 (300)
Q Consensus 103 ~y~IVlFT~gD~L 115 (300)
.+.||+++++=++
T Consensus 113 ~~~ivvvNNK~Dl 125 (370)
T 2elf_A 113 KHGIIALTRSDST 125 (370)
T ss_dssp CEEEEEECCGGGS
T ss_pred CeEEEEEEeccCC
Confidence 4557788734335
No 181
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=73.29 E-value=6.7 Score=33.16 Aligned_cols=76 Identities=11% Similarity=-0.091 Sum_probs=37.5
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH-HHHHHhchhhhcce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH-SWQTLFGKNVFDYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~-~lq~lFG~~i~~y~ 105 (300)
..+.+|||| |..+... ...+...+...+ .+ ++++.|+......+..+...+. ....... ..-.-.
T Consensus 109 ~d~iiiDtp-------G~~~~~~-~~~l~~~~~~~~---~~--~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ 174 (262)
T 1yrb_A 109 NDYVLIDTP-------GQMETFL-FHEFGVRLMENL---PY--PLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATT 174 (262)
T ss_dssp CSEEEEECC-------SSHHHHH-HSHHHHHHHHTS---SS--CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCE
T ss_pred CCEEEEeCC-------Cccchhh-hhhhHHHHHHHH---hh--ceEEeccchhhhcCHHHHHHHHHHHHHHhc-ccCCCe
Confidence 479999999 7644211 111244454444 23 6777777654344444433221 1111111 112245
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
+||++.-|...
T Consensus 175 ~iv~NK~D~~~ 185 (262)
T 1yrb_A 175 IPALNKVDLLS 185 (262)
T ss_dssp EEEECCGGGCC
T ss_pred EEEEecccccc
Confidence 77888777553
No 182
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=72.43 E-value=19 Score=28.62 Aligned_cols=75 Identities=13% Similarity=0.040 Sum_probs=42.4
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..+.++||| |.-.. ....... ..+.|++++|+.+..+-+-++ +...+..++....
T Consensus 55 ~~~~~~~l~i~Dt~-------G~~~~-------~~~~~~~----~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~ 114 (181)
T 1fzq_A 55 VQSQGFKLNVWDIG-------GQRKI-------RPYWRSY----FENTDILIYVIDSADRKRFEE--TGQELTELLEEEK 114 (181)
T ss_dssp EEETTEEEEEEECS-------SCGGG-------HHHHHHH----HTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGG
T ss_pred EEECCEEEEEEECC-------CCHHH-------HHHHHHH----hCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChh
Confidence 45678999999999 64221 1111222 247899999999875433322 2233444443211
Q ss_pred --hcceEEEEEcCCCCC
Q 036659 102 --FDYMIVVFTGGDELE 116 (300)
Q Consensus 102 --~~y~IVlFT~gD~Le 116 (300)
-.-.|||.+--|-..
T Consensus 115 ~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 115 LSCVPVLIFANKQDLLT 131 (181)
T ss_dssp GTTCCEEEEEECTTSTT
T ss_pred hcCCCEEEEEECcCccc
Confidence 124677777667543
No 183
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=71.74 E-value=21 Score=29.44 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=37.4
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh-cce
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF-DYM 105 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~-~y~ 105 (300)
..+.++||| |.-.... .......+.+++|+|+.+..+-|-++ ++..|...+-...- .-+
T Consensus 75 ~~l~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~i~~~~~~~pi 134 (214)
T 3q3j_B 75 VELSLWDTS-------GSPYYDN-----------VRPLCYSDSDAVLLCFDISRPETVDS--ALKKWRTEILDYCPSTRV 134 (214)
T ss_dssp EEEEEEEEC-------CSGGGTT-----------TGGGGCTTCSEEEEEEETTCTHHHHH--HHTHHHHHHHHHCTTSEE
T ss_pred EEEEEEECC-------CCHhHHH-----------HHHHHcCCCeEEEEEEECcCHHHHHH--HHHHHHHHHHHhCCCCCE
Confidence 478899999 6422211 12233468899999999985433333 12233222222111 235
Q ss_pred EEEEEcCCCCC
Q 036659 106 IVVFTGGDELE 116 (300)
Q Consensus 106 IVlFT~gD~Le 116 (300)
|||.|--|-..
T Consensus 135 ilv~nK~Dl~~ 145 (214)
T 3q3j_B 135 LLIGCKTDLRT 145 (214)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEEChhhcc
Confidence 66666666443
No 184
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=71.00 E-value=6.6 Score=37.99 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=44.6
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+.+|||| |.... ......|+....... .||.+|||+... |. ..++..+ ..|.+. ...
T Consensus 179 ~~~DvVIIDTa-------G~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~---tg--q~av~~a-~~f~~~-l~i 239 (425)
T 2ffh_A 179 EARDLILVDTA-------GRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM---TG--QEALSVA-RAFDEK-VGV 239 (425)
T ss_dssp TTCSEEEEECC-------CCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG---GT--THHHHHH-HHHHHH-TCC
T ss_pred CCCCEEEEcCC-------Ccccc---cHHHHHHHHHhhhcc--CCceEEEEEecc---ch--HHHHHHH-HHHHhc-CCc
Confidence 56679999999 65543 234455665544333 578888998865 22 3445444 356553 566
Q ss_pred eEEEEEcCCC
Q 036659 105 MIVVFTGGDE 114 (300)
Q Consensus 105 ~IVlFT~gD~ 114 (300)
+-||+|.-|.
T Consensus 240 ~GVIlTKlD~ 249 (425)
T 2ffh_A 240 TGLVLTKLDG 249 (425)
T ss_dssp CEEEEESGGG
T ss_pred eEEEEeCcCC
Confidence 7889997664
No 185
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=70.83 E-value=84 Score=30.93 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=34.4
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQT 95 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~ 95 (300)
..|.++||+ |++|...+.+.-.+=..-.+.||+ +++.-..+ ...+.+..-|+.+-+
T Consensus 140 ~~vlllDTE-------G~~d~~~~~~~d~~ifaLa~LLSS-----~~IyN~~~-~i~~~~L~~L~~~te 195 (457)
T 4ido_A 140 VAVLLMDTQ-------GTFDSQSTLRDSATVFALSTMISS-----IQVYNLSQ-NVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEEEEEEEC-------CBTCTTCCHHHHHHHHHHHHHHCS-----EEEEEEES-SCCHHHHHHHHHHHH
T ss_pred eEEEEEecc-------CCCCcccCccccHHHHHHHHHHhh-----heeecccc-cCCHHHHHHHHHHHH
Confidence 459999999 999987764322222222333454 33333334 889988888776654
No 186
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=70.83 E-value=9.2 Score=34.90 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=41.8
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCC-hHHHHHHHHHhhcc-CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAG-SKFVGKEIVTCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~-~e~v~kEI~~ci~l-~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
+..+.+|||+ |+.+.... ...+. .+..++.. ....||.+|||+...++ + .++..+..+. +...
T Consensus 184 ~~d~~llDt~-------G~~~~~~~~~~eLs-~~r~~iaRal~~~P~~~lLvLDa~t~--~---~~~~~~~~~~--~~~~ 248 (304)
T 1rj9_A 184 GYDLLFVDTA-------GRLHTKHNLMEELK-KVKRAIAKADPEEPKEVWLVLDAVTG--Q---NGLEQAKKFH--EAVG 248 (304)
T ss_dssp TCSEEEECCC-------CCCTTCHHHHHHHH-HHHHHHHHHCTTCCSEEEEEEETTBC--T---HHHHHHHHHH--HHHC
T ss_pred CCCEEEecCC-------CCCCchHHHHHHHH-HHHHHHHHhhcCCCCeEEEEEcHHHH--H---HHHHHHHHHH--HHcC
Confidence 4567799999 87654321 11222 23333332 23468888888875422 2 2334343322 1234
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
.++|++||-|...
T Consensus 249 ~t~iivTh~d~~a 261 (304)
T 1rj9_A 249 LTGVIVTKLDGTA 261 (304)
T ss_dssp CSEEEEECTTSSC
T ss_pred CcEEEEECCcccc
Confidence 6899999987654
No 187
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=69.37 E-value=17 Score=35.47 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=45.9
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHH-HhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH---Hhchhhh
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIV-TCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQT---LFGKNVF 102 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~-~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~---lFG~~i~ 102 (300)
..|.++||| |++|...+. .-...|- -.+.||+ +++.-..+ .+.+.+..-|+.+-+ +++.+..
T Consensus 140 ~~vvllDTe-------G~~~~~~~~-~~d~~ifal~~lLSs-----~~IyN~~~-~i~~~~l~~L~~~~e~~~~~~~~~~ 205 (447)
T 3q5d_A 140 VAVLLMDTQ-------GTFDSQSTL-RDSATVFALSTMISS-----IQVYNLSQ-NVQEDDLQHLQLFTEYGRLAMEETF 205 (447)
T ss_dssp EEEEEEEEE-------CCCSSHHHH-HHHHHHHHHHHHHCS-----EEEEEESS-SCCHHHHHHHHHHHHHHHHTSCCCS
T ss_pred ceEEEEcCC-------cccccccch-hhhHHHHHHHHHHhh-----HHHHhhcc-cccHHHHHHHHHHHHHHHHHHHhhc
Confidence 579999999 999874321 1112222 1223343 33333344 999998888876555 3333321
Q ss_pred --cceEEEEEcCCCC---CCC--cccHHHhhhh
Q 036659 103 --DYMIVVFTGGDEL---EDN--DETLEDYLGR 128 (300)
Q Consensus 103 --~y~IVlFT~gD~L---e~~--~~tledyl~~ 128 (300)
-+--++|+-.|.. +.+ ..|-.+||.+
T Consensus 206 ~~~fp~l~wvvRD~~~~l~~~~g~~t~~eyLe~ 238 (447)
T 3q5d_A 206 LKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEK 238 (447)
T ss_dssp SCSEEEEEEEEEEECCTTTSCSBHHHHHHHHHH
T ss_pred ccCCCceEEEEeeccccccccCCCCCHHHHHHH
Confidence 1224455544443 111 1456667754
No 188
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=69.36 E-value=18 Score=40.19 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=45.6
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.+++.+++|||| |.-+ + .+.+.. ...+.+++|||+.+......+....+..+.. .| ..
T Consensus 356 ~~~~kI~IIDTP-------GHed------F-~~~mi~----gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lg---IP 413 (1289)
T 3avx_A 356 TPTRHYAHVDCP-------GHAD------Y-VKNMIT----GAAQMDGAILVVAATDGPMPQTREHILLGRQ-VG---VP 413 (1289)
T ss_dssp CSSCEEEEEECC-------CHHH------H-HHHHHH----TSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HT---CS
T ss_pred CCCEEEEEEECC-------ChHH------H-HHHHHH----HHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cC---CC
Confidence 357899999999 6432 2 233333 3458899999999976655555555544332 22 45
Q ss_pred ceEEEEEcCCCCC
Q 036659 104 YMIVVFTGGDELE 116 (300)
Q Consensus 104 y~IVlFT~gD~Le 116 (300)
++||+.+--|...
T Consensus 414 ~IIVVINKiDLv~ 426 (1289)
T 3avx_A 414 YIIVFLNKCDMVD 426 (1289)
T ss_dssp CEEEEEECCTTCC
T ss_pred eEEEEEeeccccc
Confidence 5778888777554
No 189
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=68.85 E-value=6.3 Score=36.71 Aligned_cols=78 Identities=8% Similarity=-0.061 Sum_probs=33.8
Q ss_pred CccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHH
Q 036659 13 PKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 92 (300)
Q Consensus 13 T~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~ 92 (300)
+..|+... ..++...+..||+| ...-..+.+++ .++.+++|+|+.+. .|.. .....
T Consensus 36 ~~~C~RC~-~l~hy~~~~~v~~~------------~e~f~~~L~~~-------~~~~~lil~VvD~~-d~~~---s~~~~ 91 (369)
T 3ec1_A 36 EVICQRCF-RLKHYNEVQDVPLD------------DDDFLSMLHRI-------GESKALVVNIVDIF-DFNG---SFIPG 91 (369)
T ss_dssp ------------------------------------CHHHHHHHHH-------HHHCCEEEEEEETT-CSGG---GCCSS
T ss_pred CEEchhHH-HhhccccccCCcCC------------HHHHHHHHHHh-------hccCcEEEEEEECC-CCCC---chhhH
Confidence 46677764 45667777777776 11112222333 34778999999997 5552 33444
Q ss_pred HHHHhchhhhcceEEEEEcCCCCCC
Q 036659 93 WQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 93 lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
+...+| -+..|+|+|-.|-+..
T Consensus 92 l~~~l~---~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 92 LPRFAA---DNPILLVGNKADLLPR 113 (369)
T ss_dssp HHHHCT---TSCEEEEEECGGGSCT
T ss_pred HHHHhC---CCCEEEEEEChhcCCC
Confidence 566666 3578999998887654
No 190
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=68.78 E-value=15 Score=36.85 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=42.8
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEE
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIV 107 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IV 107 (300)
.+++|||| |.-++... ........+++|||+.+...+..+....+..+.. .| --+||
T Consensus 71 ~i~liDTP-------Ghe~F~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-~~----vPiIV 127 (594)
T 1g7s_A 71 GLFFIDTP-------GHEAFTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRM-YR----TPFVV 127 (594)
T ss_dssp EEEEECCC-------TTSCCTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CCEEE
T ss_pred CEEEEECC-------CcHHHHHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC----CeEEE
Confidence 69999999 76554322 1123457899999999987787777666665543 22 13566
Q ss_pred EEEcCCCC
Q 036659 108 VFTGGDEL 115 (300)
Q Consensus 108 lFT~gD~L 115 (300)
+.+--|..
T Consensus 128 ViNKiDl~ 135 (594)
T 1g7s_A 128 AANKIDRI 135 (594)
T ss_dssp EEECGGGS
T ss_pred Eecccccc
Confidence 66666654
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=67.60 E-value=18 Score=37.72 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=35.1
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH 91 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~ 91 (300)
+..+++|||| |..|+. .+..+++. +.+++|+|+.+....+.+....+.
T Consensus 97 ~~~i~liDTP-------G~~df~-------~~~~~~l~----~aD~ailVvDa~~g~~~qt~~~~~ 144 (842)
T 1n0u_A 97 SFLINLIDSP-------GHVDFS-------SEVTAALR----VTDGALVVVDTIEGVCVQTETVLR 144 (842)
T ss_dssp EEEEEEECCC-------CCCSSC-------HHHHHHHH----TCSEEEEEEETTTBSCHHHHHHHH
T ss_pred CceEEEEECc-------CchhhH-------HHHHHHHH----hCCEEEEEEeCCCCCCHHHHHHHH
Confidence 6789999999 887754 23444443 678999999998777777655443
No 192
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=66.87 E-value=29 Score=32.38 Aligned_cols=74 Identities=12% Similarity=0.223 Sum_probs=43.1
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC---------HHHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS---------QEEEAALHSW 93 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT---------~EE~~al~~l 93 (300)
.+++..+.++||+ |--. ..+-...+-+|.||||+|+.+. .|. .-=..++..+
T Consensus 189 ~~~~~~l~iwDt~-------GQe~-----------~r~~w~~yf~~a~~iIfV~dls-~~d~~l~ed~~~nr~~e~~~~~ 249 (353)
T 1cip_A 189 TFKDLHFKMFDVG-------GQRS-----------ERKKWIHCFEGVTAIIFCVALS-DYDLVLAEDEEMNRMHESMKLF 249 (353)
T ss_dssp EETTEEEEEEEEC-------CSGG-----------GGGGGGGGCTTCSEEEEEEEGG-GGGCEETTEEEEEHHHHHHHHH
T ss_pred eeCCeeEEEEeCC-------Cchh-----------hhHHHHHHHhcCCEEEEEEECc-cccccccccchhhhHHHHHHHH
Confidence 4567889999999 5211 1112234567999999999997 431 1123344555
Q ss_pred HHHhchhhh-cceEEEEEcCCCC
Q 036659 94 QTLFGKNVF-DYMIVVFTGGDEL 115 (300)
Q Consensus 94 q~lFG~~i~-~y~IVlFT~gD~L 115 (300)
..+.....+ +-.||||-++-+|
T Consensus 250 ~~i~~~~~~~~~piiLv~NK~DL 272 (353)
T 1cip_A 250 DSICNNKWFTDTSIILFLNKKDL 272 (353)
T ss_dssp HHHHTCGGGTTSEEEEEEECHHH
T ss_pred HHHHcCccccCCcEEEEEECcCc
Confidence 555544332 3456666665444
No 193
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=66.77 E-value=9.9 Score=37.98 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=44.4
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhc----cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIG----MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~----l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~ 100 (300)
.|..+.+|||+ |..... .....|+.+.+. +.+.-||-+|||+... |. ..++..++ .|..
T Consensus 374 ~~~DvVLIDTa-------Grl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvLDat---tG--q~al~~ak-~f~~- 436 (503)
T 2yhs_A 374 RNIDVLIADTA-------GRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS---TG--QNAVSQAK-LFHE- 436 (503)
T ss_dssp TTCSEEEECCC-------CSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG---GT--HHHHHHHH-HHHH-
T ss_pred cCCCEEEEeCC-------Cccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEecCc---cc--HHHHHHHH-HHHh-
Confidence 45678899999 876432 334445444332 2234589999998864 32 23444333 3433
Q ss_pred hhcceEEEEEcCCCC
Q 036659 101 VFDYMIVVFTGGDEL 115 (300)
Q Consensus 101 i~~y~IVlFT~gD~L 115 (300)
....+.||+|+-|.-
T Consensus 437 ~~~itgvIlTKLD~t 451 (503)
T 2yhs_A 437 AVGLTGITLTKLDGT 451 (503)
T ss_dssp HTCCSEEEEECGGGC
T ss_pred hcCCCEEEEEcCCCc
Confidence 356788999997753
No 194
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=65.18 E-value=26 Score=33.11 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS 80 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~ 80 (300)
..+.++||| |+.+..... +.+..-....-.+.+++++|+.+..
T Consensus 71 ~~i~lvDtp-------G~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 71 IPVKMVDVA-------GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEEECC--------------------------CCCSSTTCSEEEEEEETTC
T ss_pred EEEEEEECC-------Ccccchhhh----hhHHHHHHHHHhcCCEEEEEEeccc
Confidence 579999999 876422111 1122222234478999999999863
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=64.85 E-value=11 Score=35.85 Aligned_cols=89 Identities=9% Similarity=0.103 Sum_probs=51.4
Q ss_pred CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 036659 12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH 91 (300)
Q Consensus 12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~ 91 (300)
.|..+..+ ...+.|.++.+|||| ||..........++....-+.- .+++|+|+.+... -++...+.
T Consensus 105 tT~~~~~g-~~~~~~~~i~l~D~p-------Gl~~~a~~~~~~g~~~l~~i~~----ad~il~vvD~~~p--~~~~~~i~ 170 (376)
T 4a9a_A 105 TTLVTVPG-VIRYKGAKIQMLDLP-------GIIDGAKDGRGRGKQVIAVART----CNLLFIILDVNKP--LHHKQIIE 170 (376)
T ss_dssp SCCCEEEE-EEEETTEEEEEEECG-------GGCCC-----CHHHHHHHHHHH----CSEEEEEEETTSH--HHHHHHHH
T ss_pred ceeeeeeE-EEEeCCcEEEEEeCC-------CccCCchhhhHHHHHHHHHHHh----cCccccccccCcc--HHHHHHHH
Confidence 45555444 467899999999999 8875433323333333333332 3589999887522 24455565
Q ss_pred HHHHHhchhhh-cceEEEEEcCCC
Q 036659 92 SWQTLFGKNVF-DYMIVVFTGGDE 114 (300)
Q Consensus 92 ~lq~lFG~~i~-~y~IVlFT~gD~ 114 (300)
.-...+|.... +-.+|++.-.|.
T Consensus 171 ~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 171 KELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHhhHhhccCChhhhhhHhhh
Confidence 55566776643 346677765553
No 196
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=64.58 E-value=17 Score=32.80 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=44.3
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+..+.+|||| |.... ......++....... -|+.+++|+... . . ..++..+ ..|.+. ...
T Consensus 179 ~~~D~viiDtp-------p~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~-~-~---~~~~~~~-~~~~~~-~~i 239 (295)
T 1ls1_A 179 EARDLILVDTA-------GRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM-T-G---QEALSVA-RAFDEK-VGV 239 (295)
T ss_dssp HTCCEEEEECC-------CCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG-G-T---HHHHHHH-HHHHHH-TCC
T ss_pred CCCCEEEEeCC-------CCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCC-C-c---HHHHHHH-HHHhhc-CCC
Confidence 46789999999 65543 234455665555443 367778888865 2 2 3445544 345553 455
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
.-||+|.-|.-
T Consensus 240 ~givlnk~d~~ 250 (295)
T 1ls1_A 240 TGLVLTKLDGD 250 (295)
T ss_dssp CEEEEECGGGC
T ss_pred CEEEEECCCCC
Confidence 66788977654
No 197
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=64.42 E-value=12 Score=34.00 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=44.7
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+.+|||| |..... ..+.+..|+.+-.... .||.+|+|+.... . ..++..+ ..|.+. ...
T Consensus 179 ~~~D~ViIDTp-------g~~~~~-~~~~l~~el~~i~~~~--~~d~vllVvda~~---g--~~~~~~~-~~~~~~-~~i 241 (297)
T 1j8m_F 179 EKMEIIIVDTA-------GRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASI---G--QKAYDLA-SKFNQA-SKI 241 (297)
T ss_dssp TTCSEEEEECC-------CSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGG---G--GGHHHHH-HHHHHT-CTT
T ss_pred CCCCEEEEeCC-------CCcccc-cHHHHHHHHHHHHHHh--cCCEEEEEeeCCc---h--HHHHHHH-HHHHhh-CCC
Confidence 56789999999 765421 2334555554322211 4788899988752 1 2344444 345553 566
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
+.||+|.-|.-
T Consensus 242 ~gvVlnk~D~~ 252 (297)
T 1j8m_F 242 GTIIITKMDGT 252 (297)
T ss_dssp EEEEEECGGGC
T ss_pred CEEEEeCCCCC
Confidence 88899987754
No 198
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=63.55 E-value=22 Score=35.90 Aligned_cols=70 Identities=17% Similarity=0.081 Sum_probs=45.0
Q ss_pred eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659 22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV 101 (300)
Q Consensus 22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i 101 (300)
..+++..++++||| |.-|+ ..++.+.+. ..+++++|+......+......+..+..
T Consensus 69 ~~~~~~~~nliDTp-------G~~~f-------~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~------ 124 (665)
T 2dy1_A 69 LLFRGHRVFLLDAP-------GYGDF-------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAER------ 124 (665)
T ss_dssp EEETTEEEEEEECC-------CSGGG-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHH------
T ss_pred EeeCCEEEEEEeCC-------Cccch-------HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHH------
Confidence 35678899999999 76443 244555554 3567888888876777766655555543
Q ss_pred hcceEEEEEcCCCC
Q 036659 102 FDYMIVVFTGGDEL 115 (300)
Q Consensus 102 ~~y~IVlFT~gD~L 115 (300)
..-.+|++.++=++
T Consensus 125 ~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 125 LGLPRMVVVTKLDK 138 (665)
T ss_dssp TTCCEEEEEECGGG
T ss_pred ccCCEEEEecCCch
Confidence 13445666666444
No 199
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=62.31 E-value=16 Score=35.08 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=45.2
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
++..+++|||| |..+.. +.+..++....... .||.+++|+..... ..++..+ ..|.+. ...
T Consensus 182 ~~~D~VIIDTp-------G~l~~~---~~l~~~L~~~~~~~--~p~~vllVvda~~g-----~~~~~~~-~~f~~~-l~i 242 (433)
T 2xxa_A 182 KFYDVLLVDTA-------GRLHVD---EAMMDEIKQVHASI--NPVETLFVVDAMTG-----QDAANTA-KAFNEA-LPL 242 (433)
T ss_dssp TTCSEEEEECC-------CCCTTC---HHHHHHHHHHHHHS--CCSEEEEEEETTBC-----TTHHHHH-HHHHHH-SCC
T ss_pred CCCCEEEEECC-------Cccccc---HHHHHHHHHHHHhh--cCcceeEEeecchh-----HHHHHHH-HHHhcc-CCC
Confidence 56789999999 766532 34556665544332 57888999887522 1344444 456553 455
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
.-||+|.-|.-
T Consensus 243 ~gvVlnK~D~~ 253 (433)
T 2xxa_A 243 TGVVLTKVDGD 253 (433)
T ss_dssp CCEEEECTTSS
T ss_pred eEEEEecCCCC
Confidence 66789987754
No 200
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=62.11 E-value=1.1e+02 Score=30.95 Aligned_cols=23 Identities=13% Similarity=-0.051 Sum_probs=15.5
Q ss_pred HHHHhhccCCCCCeEEEEEEeCC
Q 036659 57 EIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 57 EI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
.++.||.-+-|-.+.|+|+.|..
T Consensus 221 ~~R~~I~~~F~~~~cf~lp~P~~ 243 (592)
T 1f5n_A 221 LPRLCIRKFFPKKKCFVFDRPVH 243 (592)
T ss_dssp HHHHHHHHHCSCEEEEECCCCSC
T ss_pred hHHHHHHHhCCCCcEEEeCCCCc
Confidence 45667766667777777776654
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=61.40 E-value=12 Score=36.25 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=43.8
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+..+.+|||| |..+.... .....|+..-.... .||.++||+.... .++... +-..|.+ ...-
T Consensus 178 ~~~DvvIIDTa-------Gr~~~~~d-~~lm~el~~i~~~~--~pd~vlLVlDa~~--gq~a~~----~a~~f~~-~~~~ 240 (433)
T 3kl4_A 178 NKMDIIIVDTA-------GRHGYGEE-TKLLEEMKEMYDVL--KPDDVILVIDASI--GQKAYD----LASRFHQ-ASPI 240 (433)
T ss_dssp TTCSEEEEEEC-------CCSSSCCT-THHHHHHHHHHHHH--CCSEEEEEEEGGG--GGGGHH----HHHHHHH-HCSS
T ss_pred cCCCEEEEECC-------CCccccCC-HHHHHHHHHHHHhh--CCcceEEEEeCcc--chHHHH----HHHHHhc-ccCC
Confidence 46789999999 76552122 23446665544433 3688889988752 222222 2245554 3456
Q ss_pred eEEEEEcCCCC
Q 036659 105 MIVVFTGGDEL 115 (300)
Q Consensus 105 ~IVlFT~gD~L 115 (300)
+.|++|.-|.-
T Consensus 241 ~gVIlTKlD~~ 251 (433)
T 3kl4_A 241 GSVIITKMDGT 251 (433)
T ss_dssp EEEEEECGGGC
T ss_pred cEEEEeccccc
Confidence 88999987754
No 202
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=59.83 E-value=7.8 Score=36.16 Aligned_cols=78 Identities=8% Similarity=-0.025 Sum_probs=33.5
Q ss_pred CccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHH
Q 036659 13 PKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 92 (300)
Q Consensus 13 T~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~ 92 (300)
+..|+... ..++...+..|+++ .+...+-+.. ...+.|++|+|+.+. .| +......
T Consensus 34 ~~~C~Rc~-~l~hy~~~~~v~~~---------------~e~f~~~l~~----i~~~~~~il~VvD~~-d~---~~~~~~~ 89 (368)
T 3h2y_A 34 QVICQRCF-RLKHYNEIQDVSLT---------------DDDFLRILNG----IGKSDALVVKIVDIF-DF---NGSWLPG 89 (368)
T ss_dssp --------------------------------------CHHHHHHHHH----HHHSCCEEEEEEETT-SH---HHHCCTT
T ss_pred CcEEhhhh-hhhccCccccCCCC---------------HHHHHHHHHH----HhccCcEEEEEEECC-CC---cccHHHH
Confidence 56677664 34566666666655 1222222221 233788999999987 32 3444455
Q ss_pred HHHHhchhhhcceEEEEEcCCCCCC
Q 036659 93 WQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 93 lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
+.+++|. ...|+|++-.|-+..
T Consensus 90 l~~~~~~---~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 90 LHRFVGN---NKVLLVGNKADLIPK 111 (368)
T ss_dssp HHHHSSS---SCEEEEEECGGGSCT
T ss_pred HHHHhCC---CcEEEEEEChhcCCc
Confidence 6666662 468899998886644
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=59.29 E-value=69 Score=29.16 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=24.0
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
..|..+.+|||| |+..+ .. .+ ....+++|+|+..+
T Consensus 169 ~~~~~~iiiDTp-------Gi~~~----~~---~~-------~~~aD~vl~V~d~~ 203 (355)
T 3p32_A 169 AAGFDVILIETV-------GVGQS----EV---AV-------ANMVDTFVLLTLAR 203 (355)
T ss_dssp HTTCCEEEEEEC-------SCSSH----HH---HH-------HTTCSEEEEEEESS
T ss_pred hCCCCEEEEeCC-------CCCcH----HH---HH-------HHhCCEEEEEECCC
Confidence 368899999999 75431 11 11 15778999999865
No 204
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=56.76 E-value=1.2e+02 Score=27.99 Aligned_cols=74 Identities=11% Similarity=0.195 Sum_probs=41.1
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhh-ccCCCCCeEEEEEEeCC-------CC-CCHHHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCI-GMAKDGIHAVLVVFSVR-------SR-FSQEEEAALHSW 93 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci-~l~~pGpHA~LLV~~v~-------~r-fT~EE~~al~~l 93 (300)
.+++..+.+.||. |- |--+++ ..+-.|.||+|+|+++. .. -..-=..++..+
T Consensus 163 ~~~~v~l~iwDtg-------GQ------------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~ 223 (327)
T 3ohm_A 163 DLQSVIFRMVDVG-------GQ------------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF 223 (327)
T ss_dssp EETTEEEEEEEEC-------CS------------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHH
T ss_pred EeeceeeEEEEcC-------Cc------------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHH
Confidence 4567788888888 41 112222 33567999999999764 00 011112345555
Q ss_pred HHHhchhhh-cceEEEEEcCCCC
Q 036659 94 QTLFGKNVF-DYMIVVFTGGDEL 115 (300)
Q Consensus 94 q~lFG~~i~-~y~IVlFT~gD~L 115 (300)
..+.....+ +-.||||-++-+|
T Consensus 224 ~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 224 RTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp HHHHTSGGGTTCEEEEEEECHHH
T ss_pred HHHhhhhccCCceEEEEEECchh
Confidence 555554443 3456666665444
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=56.27 E-value=4.3 Score=37.86 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=41.2
Q ss_pred EEEEEeCCCCcccCcccCCCCCChHHHHH-HHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659 28 LEKVIDTRWVRHAIARLFDFSAGSKFVGK-EIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI 106 (300)
Q Consensus 28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~k-EI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I 106 (300)
.+.+|||| |+++.+.-.+.+.. ++..++ ....+|++++++..+..........++. +-+.+ ..++
T Consensus 213 ~~~liDtP-------G~~~~~~~~~~l~~~~l~~~~--~~~~i~~~~~~l~~~~~~~~g~l~~l~~---l~~~~--~~~~ 278 (369)
T 3ec1_A 213 GATLYDTP-------GIINHHQMAHFVDARDLKIIT--PKREIHPRVYQLNEGQTLFFGGLARLDY---IKGGR--RSFV 278 (369)
T ss_dssp TCEEEECC-------SCCCCSSGGGGSCTTTHHHHS--CSSCCCCEEEEECTTEEEEETTTEEEEE---EESSS--EEEE
T ss_pred CeEEEeCC-------CcCcHHHHHHHHhHHHHHHHh--cccccCceEEEEcCCceEEECCEEEEEE---ccCCC--ceEE
Confidence 48999999 88876533333333 344433 2357899999988741100001011111 11222 2468
Q ss_pred EEEEcCCCCCC
Q 036659 107 VVFTGGDELED 117 (300)
Q Consensus 107 VlFT~gD~Le~ 117 (300)
++|+-.|.+..
T Consensus 279 ~v~~k~d~~~~ 289 (369)
T 3ec1_A 279 CYMANELTVHR 289 (369)
T ss_dssp EEECTTSCEEE
T ss_pred EEecCCccccc
Confidence 88888887743
No 206
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.57 E-value=1.5e+02 Score=28.34 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 036659 270 EIRKLRENLERAQ 282 (300)
Q Consensus 270 ~i~~lre~le~~~ 282 (300)
++.+++..++..+
T Consensus 545 ~~~~le~~~~~~~ 557 (597)
T 3oja_B 545 ENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhh
Confidence 3333333333333
No 207
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=53.67 E-value=47 Score=29.93 Aligned_cols=83 Identities=14% Similarity=0.017 Sum_probs=49.7
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
.+..+.+|||| |+... ......++.+-+. +..|+.+++|++... . ...+..+.+.|. .+..
T Consensus 181 ~~~dlvIiDT~-------G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~--~---~~~~~~~~~~~~--~l~~ 241 (296)
T 2px0_A 181 SEYDHVFVDTA-------GRNFK---DPQYIDELKETIP--FESSIQSFLVLSATA--K---YEDMKHIVKRFS--SVPV 241 (296)
T ss_dssp GGSSEEEEECC-------CCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTB--C---HHHHHHHTTTTS--SSCC
T ss_pred cCCCEEEEeCC-------CCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCC--C---HHHHHHHHHHHh--cCCC
Confidence 45679999999 87542 2334455555432 234788888887541 1 234555566676 4567
Q ss_pred eEEEEEcCCCCCCCcccHHHhhh
Q 036659 105 MIVVFTGGDELEDNDETLEDYLG 127 (300)
Q Consensus 105 ~IVlFT~gD~Le~~~~tledyl~ 127 (300)
.-||+|.-|.-... ..+-+.+.
T Consensus 242 ~giVltk~D~~~~~-g~~~~~~~ 263 (296)
T 2px0_A 242 NQYIFTKIDETTSL-GSVFNILA 263 (296)
T ss_dssp CEEEEECTTTCSCC-HHHHHHHH
T ss_pred CEEEEeCCCcccch-hHHHHHHH
Confidence 77888987755332 24444444
No 208
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=52.92 E-value=64 Score=26.38 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHH
Q 036659 240 SRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRK 290 (300)
Q Consensus 240 ~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~~~~r~ 290 (300)
..|..+|+.+.+-+-+-|..-+...+.+..++..|.+..+.+.....++|+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333335555555555666666666655555444443
No 209
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=52.45 E-value=22 Score=34.16 Aligned_cols=46 Identities=9% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 66 KDGIHAVLVVFSVR-SRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 66 ~pGpHA~LLV~~v~-~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
.|-.|++|+.+... ..|+..+...+..+. . -..+|+|.+..|.+..
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~--~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E--KVNIIPLIAKADTLTP 182 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHHHHHHHHT----T--TSEEEEEEESTTSSCH
T ss_pred CCCeeEEEEEecCcccCCCHHHHHHHHHHh----c--cCcEEEEEEcccCccH
Confidence 35556666666543 478888866665553 2 2357788888887653
No 210
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=51.98 E-value=45 Score=26.68 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=27.8
Q ss_pred eEEEEEEeCCCCCCHHHHH-HHHHHHHHhch--hhhcceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 70 HAVLVVFSVRSRFSQEEEA-ALHSWQTLFGK--NVFDYMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 70 HA~LLV~~v~~rfT~EE~~-al~~lq~lFG~--~i~~y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
+.+|+|+..+ .++ ..-. +++.+.. ++. ...+. .||+++-+.-......+.+++..
T Consensus 99 d~viiv~~~~-~~~-~~~~~~~~~l~~-~~~~~~~~~~-~vv~N~~~~~~~~~~~~~~~l~~ 156 (206)
T 4dzz_A 99 DLVIIPVTPS-PLD-FSAAGSVVTVLE-AQAYSRKVEA-RFLITRKIEMATMLNVLKESIKD 156 (206)
T ss_dssp SEEEEEECSC-TTT-HHHHHHHHHHHT-TSCGGGCCEE-EEEECSBCTTEEEEHHHHHHHHH
T ss_pred CEEEEEecCC-HHH-HHHHHHHHHHHH-HHHhCCCCcE-EEEEeccCCCchHHHHHHHHHHH
Confidence 4688888876 777 5433 3333333 332 11233 77888766322211245555543
No 211
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=51.75 E-value=1.1e+02 Score=27.93 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhhhHHHHhhhhhhhhHHHHHHHHHHHhHHhhcc-hHHHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 036659 211 DIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAP-LKVEEAAQLAQMKSNDEIRKLRENLERAQRE 284 (300)
Q Consensus 211 e~f~e~e~~~~~~v~~~~~~~~~~~l~~~~~lE~q~~~eq~a~-le~e~~~~~~~~~~~~~i~~lre~le~~~r~ 284 (300)
..|.+|++.+... .++.+....++|+.+|.|+..-.++. ..+|+..+.+-.+..+.+..|.++...+++.
T Consensus 16 ~~f~~Ak~rLe~~----hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~Erqq 86 (239)
T 3k66_A 16 DDFKKAEMRMDEK----HRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKE 86 (239)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4588888655443 33455577779999999988876655 4566666777777777777777766555433
No 212
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=51.49 E-value=73 Score=23.76 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHh---cHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMK---SNDEIRKLRENLERAQRETEELRKRAE 293 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~---~~~~i~~lre~le~~~r~~~~~r~~~~ 293 (300)
....++.++........+.|..+..++.+ .++++.+..+.|..++...++..+.+.
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~ 79 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKAT 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555544433334444444444443 345555566666666666666555543
No 213
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=50.87 E-value=1.9 Score=40.95 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=2.3
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLE 279 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le 279 (300)
+...+.+++.++.+|+.+++.+.++.+.+++.+|+.+..+.+
T Consensus 341 ~~~e~~kklee~~~~r~e~~~~~~~~e~~~~~~~~~~~~~~~ 382 (386)
T 2bnx_A 341 KATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKD 382 (386)
T ss_dssp TTCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888887787777777777776665443
No 214
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.41 E-value=37 Score=33.20 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=26.7
Q ss_pred hhcCCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCC-CCChHHHHHHH
Q 036659 166 QLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQ-PYTDDIFVELK 217 (300)
Q Consensus 166 ~~C~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~-~yt~e~f~e~e 217 (300)
-+|..-|-+=..-.+-+..-...|.+|-..|+.+.+.+.-. -|+..|+..++
T Consensus 46 ~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk 98 (390)
T 1deq_A 46 TKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMR 98 (390)
T ss_pred CCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45666555433211111112467777777777777665432 25555554444
No 215
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.64 E-value=99 Score=25.69 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=19.5
Q ss_pred HhcHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 036659 265 MKSNDEIRKLRENLERAQRETEELRKRAE 293 (300)
Q Consensus 265 ~~~~~~i~~lre~le~~~r~~~~~r~~~~ 293 (300)
.+..++|..|..+|..+--+.+.+|+..+
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 34556777777777777766666666543
No 216
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=48.73 E-value=2 Score=43.00 Aligned_cols=83 Identities=13% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-----C--C
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-----F--S 83 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-----f--T 83 (300)
++|...... ...++++.+++|||| |.-++... +.....+.+++|||+.+... | .
T Consensus 240 GiTid~~~~-~~~~~~~~i~iiDTP-------Gh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~ 300 (592)
T 3mca_A 240 GVTMDVAST-TFESDKKIYEIGDAP-------GHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLEN 300 (592)
T ss_dssp --------------------CCEEE-------SSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSC
T ss_pred CeeEEeeEE-EEEeCCeEEEEEECC-------ChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccc
Confidence 344433333 234578999999999 64432110 11223467888888887632 3 3
Q ss_pred HHHHHHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659 84 QEEEAALHSWQTLFGKNVFDYMIVVFTGGDELE 116 (300)
Q Consensus 84 ~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le 116 (300)
......+..+. ..| ..++|||++--|...
T Consensus 301 ~qt~e~l~~~~-~lg---ip~iIvviNKiDl~~ 329 (592)
T 3mca_A 301 GQTREHAYLLR-ALG---ISEIVVSVNKLDLMS 329 (592)
T ss_dssp SSHHHHHHHHH-HSS---CCCEEEEEECGGGGT
T ss_pred hHHHHHHHHHH-HcC---CCeEEEEEecccccc
Confidence 33333333332 233 345788888777543
No 217
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=44.30 E-value=59 Score=25.70 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=11.1
Q ss_pred CCeEEEEEEeCCCC
Q 036659 68 GIHAVLVVFSVRSR 81 (300)
Q Consensus 68 GpHA~LLV~~v~~r 81 (300)
|-|++++|+.+..+
T Consensus 79 ~~~~~i~v~d~~~~ 92 (184)
T 2zej_A 79 QRALYLAVYDLSKG 92 (184)
T ss_dssp HSEEEEEEEEGGGC
T ss_pred CCcEEEEEEeCCcc
Confidence 56899999998644
No 218
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=41.33 E-value=22 Score=33.50 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
.+..+.++||| |+.......+.++......+ .+.+++++|+.+.
T Consensus 67 ~~~~i~lvDtp-------Gl~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~ 110 (368)
T 2dby_A 67 VPTHVEFVDIA-------GLVKGAHKGEGLGNQFLAHI----REVAAIAHVLRCF 110 (368)
T ss_dssp ECCEEEEEECC-------SCCCCCCSSSCTTHHHHHHH----HTCSEEEEEEECC
T ss_pred CCceEEEEECC-------CccccccccchHHHHHHHHH----HhCCEEEEEEECC
Confidence 35689999999 87654221112222222222 2668999999876
No 219
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=40.96 E-value=1.3e+02 Score=25.08 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhhccCCCCCeEEEEEEe
Q 036659 51 SKFVGKEIVTCIGMAKDGIHAVLVVFS 77 (300)
Q Consensus 51 ~e~v~kEI~~ci~l~~pGpHA~LLV~~ 77 (300)
...+.+||++-|. ..|+.++||--.
T Consensus 11 dpeilkeivreik--rqgvrvvllysd 35 (162)
T 2l82_A 11 DPEILKEIVREIK--RQGVRVVLLYSD 35 (162)
T ss_dssp CHHHHHHHHHHHH--HTTCEEEEEECC
T ss_pred CHHHHHHHHHHHH--hCCeEEEEEecC
Confidence 3567788888776 469999888643
No 220
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.87 E-value=2e+02 Score=27.05 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=17.7
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhHHHHHH
Q 036659 260 AQLAQMKSNDEIRKLRENLERAQRETEELRK 290 (300)
Q Consensus 260 ~~~~~~~~~~~i~~lre~le~~~r~~~~~r~ 290 (300)
+.+....+.++|++++++-++.+.+.+++-+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 4444455566677777766666555554433
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=40.66 E-value=61 Score=29.86 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=40.9
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM 105 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~ 105 (300)
+..+.+|||+ |....... ...|+....... -||-.++|+...+. ..++..++. |.+ ....+
T Consensus 211 ~~d~vliDta-------G~~~~~~~---l~~eL~~i~ral--~~de~llvLDa~t~-----~~~~~~~~~-~~~-~~~it 271 (328)
T 3e70_C 211 GIDVVLIDTA-------GRSETNRN---LMDEMKKIARVT--KPNLVIFVGDALAG-----NAIVEQARQ-FNE-AVKID 271 (328)
T ss_dssp TCSEEEEEEC-------CSCCTTTC---HHHHHHHHHHHH--CCSEEEEEEEGGGT-----THHHHHHHH-HHH-HSCCC
T ss_pred cchhhHHhhc-------cchhHHHH---HHHHHHHHHHHh--cCCCCEEEEecHHH-----HHHHHHHHH-HHH-hcCCC
Confidence 4557789999 87654332 233333322111 26778888876532 244444433 432 34678
Q ss_pred EEEEEcCCCC
Q 036659 106 IVVFTGGDEL 115 (300)
Q Consensus 106 IVlFT~gD~L 115 (300)
+|++|+-|.-
T Consensus 272 ~iilTKlD~~ 281 (328)
T 3e70_C 272 GIILTKLDAD 281 (328)
T ss_dssp EEEEECGGGC
T ss_pred EEEEeCcCCc
Confidence 9999997753
No 222
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=40.39 E-value=1.4e+02 Score=23.93 Aligned_cols=35 Identities=6% Similarity=-0.068 Sum_probs=20.7
Q ss_pred hhhcCCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCC
Q 036659 165 LQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDG 205 (300)
Q Consensus 165 l~~C~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG 205 (300)
.+..+-.|+...-++. ..|.+|+..+-..+.+..+
T Consensus 157 a~~~~~~~~e~Sa~~~------~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 157 AGTLSCKHIETSAALH------HNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp HHHTTCEEEEEBTTTT------BSHHHHHHHHHHHHHTTC-
T ss_pred HHHhCCEEEEEcCCCC------CCHHHHHHHHHHHHHHhcC
Confidence 3334446776666543 4688888777666655443
No 223
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.80 E-value=73 Score=24.77 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhHHHHh
Q 036659 186 TEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLE 228 (300)
Q Consensus 186 ~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v~~~~ 228 (300)
..++..|.+.++.+..+|.|.+..-.+...+++.+...++..+
T Consensus 84 ~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~~~~~~ 126 (128)
T 2ebm_A 84 DNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIK 126 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999988888888876665554443
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=38.98 E-value=18 Score=32.44 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=21.8
Q ss_pred CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHH
Q 036659 11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVT 60 (300)
Q Consensus 11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ 60 (300)
++|+.++. ... +..+.+|||| |+.+++...+.....+.-
T Consensus 153 g~T~~~~~---~~~-~~~~~l~Dtp-------G~~~~~~~~~~~~~~~~~ 191 (282)
T 1puj_A 153 GITTSQQW---VKV-GKELELLDTP-------GILWPKFEDELVGLRLAV 191 (282)
T ss_dssp ------CC---EEE-TTTEEEEECC-------CCCCSCCCCHHHHHHHHH
T ss_pred CeeeeeEE---EEe-CCCEEEEECc-------CcCCCCCCCHHHHHHHHH
Confidence 45665542 233 5679999999 998887766655544433
No 225
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.81 E-value=98 Score=23.52 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=8.9
Q ss_pred HHHHHHhhhhhHHHHh
Q 036659 213 FVELKLLFLPFVNDLE 228 (300)
Q Consensus 213 f~e~e~~~~~~v~~~~ 228 (300)
..+++..+++..+.+.
T Consensus 21 i~eLq~~L~~K~eELr 36 (72)
T 3nmd_A 21 LRDLQYALQEKIEELR 36 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666655554444
No 226
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.19 E-value=1.3e+02 Score=32.47 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=21.3
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLE 279 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le 279 (300)
++..+++++.+..+...+.|++.+..+...++++..|+++..
T Consensus 992 e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~ 1033 (1080)
T 2dfs_A 992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554444333334455555555555666665555443
No 227
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=37.72 E-value=46 Score=29.51 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=31.3
Q ss_pred CeEEEEEEeCC-CCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 69 IHAVLVVFSVR-SRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 69 pHA~LLV~~v~-~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
.||.|+++.-. ..+++.|...+..+... ...|+|.|..|.+..
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 48888888643 47899987777766542 567888888898865
No 228
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.48 E-value=2.6e+02 Score=26.10 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=14.6
Q ss_pred hcHHHHHHHHHHHHHHHHhHHHHH
Q 036659 266 KSNDEIRKLRENLERAQRETEELR 289 (300)
Q Consensus 266 ~~~~~i~~lre~le~~~r~~~~~r 289 (300)
+.+.+|.+|..+|+.+.-+.+++|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 447 ELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445567777777766665555544
No 229
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=36.22 E-value=85 Score=25.49 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=23.6
Q ss_pred CEEEEEEeCCCCcccCcccCCCCCCh-HHHHHHHHHhhccCCCCCeEEEEEEe
Q 036659 26 VVLEKVIDTRWVRHAIARLFDFSAGS-KFVGKEIVTCIGMAKDGIHAVLVVFS 77 (300)
Q Consensus 26 Gr~v~VIDTP~w~~~~~glfd~~~~~-e~v~kEI~~ci~l~~pGpHA~LLV~~ 77 (300)
-..+.|||+-+-- +--|...+. +.+..-+...+. .-|+-++=|+.|.
T Consensus 12 ~~iv~vlD~SgSM----~~~d~~~~r~~~ak~~~~~~~~-~~~~~~v~lv~F~ 59 (218)
T 3ibs_A 12 VEVIIALDISNSM----LAQDVQPSRLEKAKRLISRLVD-ELDNDKVGMIVFA 59 (218)
T ss_dssp CEEEEEEECSGGG----GCCSSSSCHHHHHHHHHHHHHH-TCSSCEEEEEEES
T ss_pred CcEEEEEECCcCc----ccccCCcCHHHHHHHHHHHHHH-hCCCCeEEEEEEC
Confidence 3478999999321 111221222 333333444443 3467787777764
No 230
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=35.70 E-value=1.8e+02 Score=23.87 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=37.7
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhhhhhHHHHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 036659 205 GQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRE 284 (300)
Q Consensus 205 G~~yt~e~f~e~e~~~~~~v~~~~~~~~~~~l~~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~ 284 (300)
-.+|+|.+-.|++. +++..+.+- |+-+++.. ||- .+-|+++.+++.+|+..++++.-+..+....
T Consensus 30 ~~~~sDPL~~ELeR-Lr~~~d~~~-K~HE~kkl-------qLk------se~e~E~ae~k~KYD~~lqe~ese~~~kkK~ 94 (115)
T 3vem_A 30 FPVFNDPFLHELEK-LRRESENSK-KTFEEKKS-------ILK------AELERKMAEVQAEFRRKFHEVEAEHNTRTTK 94 (115)
T ss_dssp ---CCSHHHHHHHH-HHHHHHHHH-HHHHHHHH-------HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHH-HHHHHHHHH-HHHHHHHH-------HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666663 444444443 34444321 111 2234448889999999999887666655544
Q ss_pred HHHHH
Q 036659 285 TEELR 289 (300)
Q Consensus 285 ~~~~r 289 (300)
.+..+
T Consensus 95 le~~~ 99 (115)
T 3vem_A 95 IEKDK 99 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 231
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.90 E-value=2.5e+02 Score=24.63 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=32.5
Q ss_pred ChHHHHHHHHhhhhh---HHHHhhhhhhhhHHHHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 036659 209 TDDIFVELKLLFLPF---VNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERA 281 (300)
Q Consensus 209 t~e~f~e~e~~~~~~---v~~~~~~~~~~~l~~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~ 281 (300)
++.-|..+...+... +..++.++ -+....+..++..+...+..-.+.+.....++.+.+..+..++.+++.-
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~ei-le~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREI-ENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677666444332 33333211 1222233444444443333223333344555556666666666555543
No 232
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=31.47 E-value=98 Score=27.59 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=24.3
Q ss_pred CCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcceEEEEEcCC
Q 036659 68 GIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 68 GpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y~IVlFT~gD 113 (300)
-.+++|+|++.+ ..+..+- .+++.+.. .| .+-.-||++.-+
T Consensus 224 ~aD~vllVv~~~-~~~~~~~~~~~~~l~~-~g---~~~~GvVlN~v~ 265 (286)
T 3la6_A 224 HVGTTLMVARYA-VNTLKEVETSLSRFEQ-NG---IPVKGVILNSIF 265 (286)
T ss_dssp TCSEEEEEEETT-TSBHHHHHHHHHHHHH-TT---CCCCEEEEEEEC
T ss_pred HCCeEEEEEeCC-CCcHHHHHHHHHHHHh-CC---CCEEEEEEcCcc
Confidence 345799999987 7776654 33344432 33 344556777654
No 233
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=31.46 E-value=43 Score=32.47 Aligned_cols=43 Identities=9% Similarity=0.188 Sum_probs=28.3
Q ss_pred CeE-EEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 69 IHA-VLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 69 pHA-~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
+|+ +++|.+.+..++..|...+..|. .....|+|.+-.|.|..
T Consensus 148 Vh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 148 IHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADAISK 191 (427)
T ss_dssp CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGGSCH
T ss_pred ccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhccch
Confidence 576 66677777678998866666553 13468889998898865
No 234
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=31.40 E-value=72 Score=27.10 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=27.5
Q ss_pred CCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 66 KDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 66 ~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
..+.|++|+|+.+.++-|-+. ..-+..+....+++ -.|||.-.+-+|.+
T Consensus 83 ~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~---~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD---VIIMLVGNKTDLAD 132 (216)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS---SEEEEEEECTTCGG
T ss_pred hccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC---CeEEEEeeccchHh
Confidence 358999999999985433332 22333344444543 24555555555644
No 235
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=31.24 E-value=1.6e+02 Score=26.64 Aligned_cols=40 Identities=10% Similarity=-0.021 Sum_probs=24.0
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCcC
Q 036659 260 AQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAI 299 (300)
Q Consensus 260 ~~~~~~~~~~~i~~lre~le~~~r~~~~~r~~~~~~~c~i 299 (300)
...+...+.+.+..+.+.+.......+.+...+..+.|.+
T Consensus 249 l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (357)
T 3rrk_A 249 VARLSRESGEALIALWTRAKDEVARYKAVADMAAGKYGAA 288 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcEEE
Confidence 4444445556677777777766655555555555556654
No 236
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.69 E-value=39 Score=32.77 Aligned_cols=40 Identities=5% Similarity=0.072 Sum_probs=27.2
Q ss_pred HHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH-HHHHHhc
Q 036659 55 GKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH-SWQTLFG 98 (300)
Q Consensus 55 ~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~-~lq~lFG 98 (300)
..||.+.+. .++-+++|+-+.+ .+|++|...+. .+..-+.
T Consensus 166 Dieilk~L~---~~~~vI~Vi~KtD-~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 166 DLVTMKKLD---SKVNIIPIIAKAD-AISKSELTKFKIKITSELV 206 (427)
T ss_dssp HHHHHHHTC---SCSEEEEEESCGG-GSCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHh---hCCCEEEEEcchh-ccchHHHHHHHHHHHHHHH
Confidence 356666654 5788888888887 89998866553 3444343
No 237
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=30.09 E-value=1.9e+02 Score=22.23 Aligned_cols=22 Identities=9% Similarity=0.339 Sum_probs=17.0
Q ss_pred HHHhcHHHHHHHHHHHHH-HHHh
Q 036659 263 AQMKSNDEIRKLRENLER-AQRE 284 (300)
Q Consensus 263 ~~~~~~~~i~~lre~le~-~~r~ 284 (300)
.+..++.+||..+..|.+ -+++
T Consensus 66 ~R~~~~~klr~Yk~dl~~~lk~~ 88 (97)
T 3onj_A 66 ERATYKAKLREWKKTIQSDIKRP 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 366888889999988888 6644
No 238
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.56 E-value=1.3e+02 Score=32.57 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=22.9
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEEL 288 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~~~~ 288 (300)
++..|++++.+-+.+..|.++.. ..-...++++..+++++++..++.+.+
T Consensus 961 e~~~L~~~l~~le~~~~e~~~~~-~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 961 ETEKLRSDVERLRMSEEEAKNAT-NRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444333332222211 112344556666666666655444443
No 239
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=29.43 E-value=3.5e+02 Score=25.72 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=40.0
Q ss_pred eCC-EEEEEEeCCCCcccCcccCCC-----CCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 036659 24 IQV-VLEKVIDTRWVRHAIARLFDF-----SAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLF 97 (300)
Q Consensus 24 ~~G-r~v~VIDTP~w~~~~~glfd~-----~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lF 97 (300)
+++ ..++|.||| |+.+. .....+. +. + ...+++|.|+.+. +-..++-.....-...+
T Consensus 201 ~~~~~~~~l~Dtp-------Gli~~a~~~~~L~~~fl-~~----~----era~~lL~vvDls-~~~~~~ls~g~~el~~l 263 (416)
T 1udx_A 201 VSEEERFTLADIP-------GIIEGASEGKGLGLEFL-RH----I----ARTRVLLYVLDAA-DEPLKTLETLRKEVGAY 263 (416)
T ss_dssp CSSSCEEEEEECC-------CCCCCGGGSCCSCHHHH-HH----H----TSSSEEEEEEETT-SCHHHHHHHHHHHHHHH
T ss_pred ecCcceEEEEecc-------ccccchhhhhhhhHHHH-HH----H----HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHH
Confidence 444 789999999 76542 1222221 11 1 2467899999985 22233333333333334
Q ss_pred chhh-hcceEEEEEcCCCC
Q 036659 98 GKNV-FDYMIVVFTGGDEL 115 (300)
Q Consensus 98 G~~i-~~y~IVlFT~gD~L 115 (300)
.... -+-.|||++.-|..
T Consensus 264 a~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 264 DPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CHHHHHSCEEEEEECCTTS
T ss_pred hHHhhcCCEEEEEECCChh
Confidence 4332 34567777666643
No 240
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=29.28 E-value=10 Score=34.65 Aligned_cols=35 Identities=6% Similarity=-0.054 Sum_probs=24.7
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
++|..+++|||| |+.++ .. .+ ....+++|+|+...
T Consensus 146 ~~~~~i~liDTp-------G~~~~----~~---~~-------~~~aD~vl~Vvd~~ 180 (341)
T 2p67_A 146 AAGYDVVIVETV-------GVGQS----ET---EV-------ARMVDCFISLQIAG 180 (341)
T ss_dssp HTTCSEEEEEEE-------CCTTH----HH---HH-------HTTCSEEEEEECC-
T ss_pred ccCCCEEEEeCC-------Cccch----HH---HH-------HHhCCEEEEEEeCC
Confidence 568899999999 87652 11 12 15778999999875
No 241
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.04 E-value=58 Score=24.39 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhh
Q 036659 269 DEIRKLRENLERAQRETEELRKRAE 293 (300)
Q Consensus 269 ~~i~~lre~le~~~r~~~~~r~~~~ 293 (300)
+.|+.|...|..+..+.+++|....
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 242
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.77 E-value=2e+02 Score=22.23 Aligned_cols=24 Identities=4% Similarity=0.250 Sum_probs=15.4
Q ss_pred HHhcHHHHHHHHHHHHHHHHhHHH
Q 036659 264 QMKSNDEIRKLRENLERAQRETEE 287 (300)
Q Consensus 264 ~~~~~~~i~~lre~le~~~r~~~~ 287 (300)
+..++.++|..+.+|.+-+++-..
T Consensus 69 R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 69 RGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777776654443
No 243
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=28.38 E-value=20 Score=33.97 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=24.4
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
..+.++||| |+.......+.++...... -.+.|++++|+.+.
T Consensus 66 ~~i~lvDtp-------Gl~~~a~~~~gl~~~fl~~----ir~ad~il~VvD~~ 107 (363)
T 1jal_A 66 TTMEFVDIA-------GLVAGASKGEGLGNKFLAN----IRETDAIGHVVRCF 107 (363)
T ss_dssp CEEEEEECC-------SCCTTHHHHGGGTCCHHHH----HHTCSEEEEEEECS
T ss_pred eEEEEEECC-------CCcccccccchHHHHHHHH----HHhcCeEEEEEecC
Confidence 579999999 8764311001111111111 13789999999876
No 244
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=27.71 E-value=80 Score=25.75 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=34.4
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY 104 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y 104 (300)
+.-.++||||| +-++.. .. ..+ ...+.+|+|+..+ .++- ..+..+.++...--...
T Consensus 130 ~~yD~viiD~p-------p~~~~~-~~--------~~l----~~aD~viiv~~~~-~~s~---~~~~~~~~~~~~~~~~~ 185 (254)
T 3kjh_A 130 DKKEAVVMDMG-------AGIEHL-TR--------GTA----KAVDMMIAVIEPN-LNSI---KTGLNIEKLAGDLGIKK 185 (254)
T ss_dssp TCCSEEEEEEC-------TTCTTC-CH--------HHH----TTCSEEEEEECSS-HHHH---HHHHHHHHHHHHHTCSC
T ss_pred CCCCEEEEeCC-------CcccHH-HH--------HHH----HHCCEEEEecCCC-HHHH---HHHHHHHHHHHHcCCcc
Confidence 45578999999 434321 11 111 2345688888765 4443 33334333333322355
Q ss_pred eEEEEEcCC
Q 036659 105 MIVVFTGGD 113 (300)
Q Consensus 105 ~IVlFT~gD 113 (300)
..||++.-+
T Consensus 186 ~~~v~N~~~ 194 (254)
T 3kjh_A 186 VRYVINKVR 194 (254)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEeCCC
Confidence 667777655
No 245
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=27.62 E-value=73 Score=28.45 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=22.9
Q ss_pred CeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCC
Q 036659 69 IHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 69 pHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD 113 (300)
.+.+|+|++.+ ..+..+ ..+++.++. .|.++ .-||++.-+
T Consensus 237 ad~vilV~~~~-~~~~~~~~~~~~~l~~-~~~~~---~GvVlN~~~ 277 (299)
T 3cio_A 237 VGTSLLVARFG-LNTAKEVSLSMQRLEQ-AGVNI---KGAILNGVI 277 (299)
T ss_dssp CSEEEEEEETT-TSCTTHHHHHHHHHHH-TTCCC---CCEEEEECC
T ss_pred CCEEEEEEcCC-CChHHHHHHHHHHHHh-CCCCe---EEEEEeCCc
Confidence 35789999887 555444 445555544 24332 336667654
No 246
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=27.20 E-value=70 Score=30.64 Aligned_cols=74 Identities=12% Similarity=0.225 Sum_probs=41.0
Q ss_pred eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC---------CHHHHHHHHHH
Q 036659 23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF---------SQEEEAALHSW 93 (300)
Q Consensus 23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf---------T~EE~~al~~l 93 (300)
.+++..+.+.||. |--. ...-...+-.|.||+|+|+.+. .| ..-=..+..++
T Consensus 213 ~~~~v~l~iwDta-------GQe~-----------~r~~w~~yf~~a~~iIfV~dis-~ydq~l~ed~~~ns~~e~~~~~ 273 (402)
T 1azs_C 213 QVDKVNFHMFDVG-------GQRD-----------ERRKWIQCFNDVTAIIFVVASS-SYNMVIREDNQTNRLQEALNLF 273 (402)
T ss_dssp EETTEEEEEEEEC-------CSGG-----------GGGGGGGGTTTCCEEEEEEETT-GGGCBCTTTSCSBHHHHHHHHH
T ss_pred ecCCccceecccc-------hhhh-----------hhhhhHhhccCCCEEEEEEECc-ccccccccccccchHHHHHHHH
Confidence 4577888899998 5211 0111233567999999999997 42 11112334444
Q ss_pred HHHhchhhh-cceEEEEEcCCCC
Q 036659 94 QTLFGKNVF-DYMIVVFTGGDEL 115 (300)
Q Consensus 94 q~lFG~~i~-~y~IVlFT~gD~L 115 (300)
..+...... +-.||||-++-+|
T Consensus 274 ~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 274 KSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp HHHHTCTTCSSCCEEEEEECHHH
T ss_pred HHHHhcccCCCCeEEEEEEChhh
Confidence 444433222 2346666655444
No 247
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=27.15 E-value=50 Score=23.69 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHhchhhhc
Q 036659 80 SRFSQEEEAALHSWQTLFGKNVFD 103 (300)
Q Consensus 80 ~rfT~EE~~al~~lq~lFG~~i~~ 103 (300)
.++|+||-..|..+...||..-|.
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~ 35 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWA 35 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchH
Confidence 489999999999999999986554
No 248
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=26.59 E-value=73 Score=31.88 Aligned_cols=29 Identities=34% Similarity=0.467 Sum_probs=5.6
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhHHHH
Q 036659 260 AQLAQMKSNDEIRKLRENLERAQRETEEL 288 (300)
Q Consensus 260 ~~~~~~~~~~~i~~lre~le~~~r~~~~~ 288 (300)
++.+-.++++.++.|.+++.+++.+++.+
T Consensus 354 ~~~~l~~~~~~~~~l~e~~~~~~~e~~~l 382 (575)
T 2i1j_A 354 SQANLLEAQDMILRLEEQLRQLQAAKEEL 382 (575)
T ss_dssp HHHHHHHHHHC------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666555554443
No 249
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=26.27 E-value=73 Score=23.86 Aligned_cols=29 Identities=3% Similarity=0.103 Sum_probs=22.9
Q ss_pred EEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCC
Q 036659 172 CVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDG 205 (300)
Q Consensus 172 ~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG 205 (300)
.++++..-. .+|++.+++++..++..|||
T Consensus 49 m~Il~P~l~-----ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 49 NIVLNPNLD-----QSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp EEEECTTCC-----HHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCC-----HHHHHHHHHHHHHHHHhcCC
Confidence 345565532 37999999999999999987
No 250
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=26.27 E-value=54 Score=22.15 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHHhchhhh
Q 036659 80 SRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 80 ~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.++|+||...|..+...||..-|
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W 25 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNW 25 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCH
Confidence 48999999999999999997544
No 251
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.65 E-value=1.2e+02 Score=29.08 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=28.1
Q ss_pred HHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 036659 241 RLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQR 283 (300)
Q Consensus 241 ~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r 283 (300)
.+++.++..+..-.+.+++|....+.|+++..++.++.-+.++
T Consensus 7 ~~~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRRk 49 (333)
T 4etp_B 7 ALEKEIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSRR 49 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443444456667888889999988888876655543
No 252
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=25.25 E-value=1.8e+02 Score=20.64 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=25.2
Q ss_pred CeEEEEEEeCCCCCCHHHHHHH-----HHHHHHhchhhhcceEEEEE
Q 036659 69 IHAVLVVFSVRSRFSQEEEAAL-----HSWQTLFGKNVFDYMIVVFT 110 (300)
Q Consensus 69 pHA~LLV~~v~~rfT~EE~~al-----~~lq~lFG~~i~~y~IVlFT 110 (300)
||+-+-+++ | |+|.|.+++| +.+.+.||...-+- .|+|+
T Consensus 1 P~I~I~l~~-G-rls~eqk~~L~~~l~~~l~~~lgip~~~v-~V~i~ 44 (76)
T 1gyx_A 1 PHIDIKCFP-R-ELDEQQKAALAADITDVIIRHLNSKDSSI-SIALQ 44 (76)
T ss_dssp CEEEEEESC-C-CCCHHHHHHHHHHHHHHHHHHHTCCGGGC-EEEEE
T ss_pred CEEEEEECC-C-CCCHHHHHHHHHHHHHHHHHHhCcCCceE-EEEEE
Confidence 455444443 4 8999998776 56777888776554 44444
No 253
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=24.68 E-value=2.7e+02 Score=24.27 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=22.6
Q ss_pred eEEEEEEeCCCCCCHHHHHHH-HHHHHHhchhhhcceEEEEEcCC
Q 036659 70 HAVLVVFSVRSRFSQEEEAAL-HSWQTLFGKNVFDYMIVVFTGGD 113 (300)
Q Consensus 70 HA~LLV~~v~~rfT~EE~~al-~~lq~lFG~~i~~y~IVlFT~gD 113 (300)
+.+|+|++.+ ..+..+-..+ +.+. -.| .+-.=||++.-+
T Consensus 216 D~vilVv~~~-~~~~~~~~~~~~~l~-~~~---~~~~GvVlN~~~ 255 (271)
T 3bfv_A 216 GNVVYVVNSE-NNNKDEVKKGKELIE-ATG---AKLLGVVLNRMP 255 (271)
T ss_dssp CEEEEEEETT-SCCHHHHHHHHHHHH-TTT---CEEEEEEEEEEC
T ss_pred CEEEEEEeCC-CCcHHHHHHHHHHHH-hCC---CCEEEEEEeCCc
Confidence 4789999987 7776654333 3333 223 233447777655
No 254
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.52 E-value=95 Score=31.06 Aligned_cols=7 Identities=29% Similarity=0.264 Sum_probs=3.5
Q ss_pred HHHHhch
Q 036659 93 WQTLFGK 99 (300)
Q Consensus 93 lq~lFG~ 99 (300)
+|.-||.
T Consensus 130 lQae~GD 136 (575)
T 2i1j_A 130 VQARHGD 136 (575)
T ss_dssp HHHHHCS
T ss_pred HHHHhcC
Confidence 3455554
No 255
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=24.04 E-value=1.6e+02 Score=27.40 Aligned_cols=73 Identities=8% Similarity=0.152 Sum_probs=40.8
Q ss_pred eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC---------HHHHHHHHHHH
Q 036659 24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS---------QEEEAALHSWQ 94 (300)
Q Consensus 24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT---------~EE~~al~~lq 94 (300)
+++..+.+.||. | .+.. ..-...+-.|.|++|+|+.+. .|. ..=..++..+.
T Consensus 158 ~~~v~l~iwDta-------G-------Qe~~----R~~w~~yy~~a~~iIfV~diS-~ydq~l~e~~~~nr~~es~~~~~ 218 (340)
T 4fid_A 158 VKDIPFHLIDVG-------G-------QRSE----RKXWVSFFSDVDCAIFVTSLA-EYDMKLYEDGNTSRLTESIAVFK 218 (340)
T ss_dssp SSSCEEEEEECC-------S-------CHHH----HHHHHTTSCSCSEEEEEEEGG-GTTCBCC--CCSBHHHHHHHHHH
T ss_pred eeeeeeccccCC-------C-------cccc----cccHHHHhccCCEEEEEEECC-ccccccccccccchHHHHHHHHH
Confidence 456677888888 4 1221 111233567999999999985 221 11123445555
Q ss_pred HHhchhhh-cceEEEEEcCCCC
Q 036659 95 TLFGKNVF-DYMIVVFTGGDEL 115 (300)
Q Consensus 95 ~lFG~~i~-~y~IVlFT~gD~L 115 (300)
.+.....+ +-.||||-++-+|
T Consensus 219 ~i~~~~~~~~~piiLv~NK~DL 240 (340)
T 4fid_A 219 DIMTNEFLKGAVKLIFLNKMDL 240 (340)
T ss_dssp HHHHCGGGTTSEEEEEEECHHH
T ss_pred HHhhhhccCCCeEEEEEECchh
Confidence 55544443 3456777666444
No 256
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.91 E-value=2e+02 Score=24.18 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=28.9
Q ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhh
Q 036659 69 IHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGR 128 (300)
Q Consensus 69 pHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~ 128 (300)
.+.+|+|+..+ .++-..-..+-....-+|.+. + ..||++.-+.-.. ...+.+++.+
T Consensus 167 aD~vivv~~~~-~~s~~~~~~~~~~l~~~~~~~-~-~~vv~N~~~~~~~-~~~~~~~l~~ 222 (267)
T 3k9g_A 167 SDYVIIPMTAE-KWAVESLDLFNFFVRKLNLFL-P-IFLIITRFKKNRT-HKTLFEILKT 222 (267)
T ss_dssp CSEEEEEEESC-TTHHHHHHHHHHHHHTTTCCC-C-EEEEEEEECTTCS-CCHHHHHHTT
T ss_pred CCeEEEEeCCC-hHHHHHHHHHHHHHHHHhccC-C-EEEEEecccCcch-HHHHHHHHhc
Confidence 45788888876 666655444433334445432 2 2366675422111 2356666643
No 257
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=23.60 E-value=3e+02 Score=22.39 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCC
Q 036659 70 HAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDE 114 (300)
Q Consensus 70 HA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~ 114 (300)
+.+|+|+..+ .++-.+ +..+.+.+...-....-||++.-+.
T Consensus 135 d~vi~v~~~~-~~~~~~---~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 135 EEALLVTNPE-ISCLTD---TMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp SEEEEEECSC-HHHHHH---HHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred CeEEEEecCC-cccHHH---HHHHHHHHHhCCCceEEEEEecCCc
Confidence 4688888765 444333 2222222322223556677786553
No 258
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=23.50 E-value=1.7e+02 Score=28.88 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=44.3
Q ss_pred ccCCC-CCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 43 RLFDF-SAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 43 glfd~-~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
|+|.. ..+.-.+..+|.+-.....+++.+++++.-+|.|. +..-+.+.++-+..+++|++||+.-.|+.
T Consensus 155 ~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~----~Ev~e~~~~~~~~g~~~rtvvV~atsd~p 224 (465)
T 3vr4_D 155 PVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITF----EEAEFFMEDFRQTGAIDRSVMFMNLANDP 224 (465)
T ss_dssp CEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECH----HHHHHHHHHHHHHTGGGGEEEEEEETTSC
T ss_pred EEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCc----HHHHHHHHHHhhcCCccceEEEEECCCCC
Confidence 56643 34445555678776554335677777777777332 34444555555678999999999887754
No 259
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=23.30 E-value=88 Score=29.73 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=25.2
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
..+.++||| |++......+.++......+. +.++++.|+.+.
T Consensus 85 ~~i~lvD~p-------Gl~~~~s~~e~L~~~fl~~ir----~~d~il~Vvd~~ 126 (392)
T 1ni3_A 85 AFLTVFDIA-------GLTKGASTGVGLGNAFLSHVR----AVDAIYQVVRAF 126 (392)
T ss_dssp EEEEEECTG-------GGCCCCCSSSSSCHHHHHHHT----TCSEEEEEEECC
T ss_pred cceEEEecc-------ccccCCcHHHHHHHHHHHHHH----HHHHHHHHHhcc
Confidence 568999999 877533222222222222222 678899998864
No 260
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=23.17 E-value=2.8e+02 Score=21.93 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=25.6
Q ss_pred eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC
Q 036659 22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS 83 (300)
Q Consensus 22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT 83 (300)
..++|.. +.++||| |.-....-. .....+.+++|+|+.+....|
T Consensus 47 i~~~g~~~~~~i~Dt~-------g~~~~~~~~-----------~~~~~~~~~~i~v~d~~~~~s 92 (199)
T 2f9l_A 47 IQVDGKTIKAQIWDTA-------GQERYRRIT-----------SAYYRGAVGALLVYDIAKHLT 92 (199)
T ss_dssp EEETTEEEEEEEEECS-------SGGGTTCCC-----------HHHHTTCSEEEEEEETTCHHH
T ss_pred EEECCEEEEEEEEECC-------Cchhhhhhh-----------HHHHhcCCEEEEEEECcCHHH
Confidence 5678864 5678999 532211110 111246789999999874433
No 261
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=22.63 E-value=1.3e+02 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRE 276 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre 276 (300)
++..|+.|+++ +|++.+++++-+..++...|+
T Consensus 5 e~~~l~~qi~~-------~ekr~~RLKevF~~ks~eFRe 36 (123)
T 4dzo_A 5 EVAELKKQVES-------AELKNQRLKEVFQTKIQEFRK 36 (123)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544 455677777778887777775
No 262
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=22.22 E-value=71 Score=21.33 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHhchh
Q 036659 80 SRFSQEEEAALHSWQTLFGKN 100 (300)
Q Consensus 80 ~rfT~EE~~al~~lq~lFG~~ 100 (300)
..+|+||...|..+...||..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~ 24 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPK 24 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHHCcC
Confidence 489999999999999999975
No 263
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=21.96 E-value=69 Score=21.35 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHHHhchhhh
Q 036659 80 SRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 80 ~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.++|+||...|..+...||..-|
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W 26 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDW 26 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCH
Confidence 48999999999999999997433
No 264
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=21.94 E-value=1.4e+02 Score=25.24 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=35.0
Q ss_pred CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHH---Hhchh
Q 036659 25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQT---LFGKN 100 (300)
Q Consensus 25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~---lFG~~ 100 (300)
+.-.+.||||| +-++. .. ...+.. .+.+|+|+..+ .++-..- .+++.+.. .++.+
T Consensus 110 ~~yD~iiiD~p-------p~~~~-----~~----~~~l~~----aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~ 168 (257)
T 1wcv_1 110 EGYDLVLLDAP-------PSLSP-----LT----LNALAA----AEGVVVPVQAE-YYALEGVAGLLATLEEVRAGLNPR 168 (257)
T ss_dssp TTCSEEEEECC-------SSCCH-----HH----HHHHHH----CSEEEEEEESS-THHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cCCCEEEEeCC-------CCCCH-----HH----HHHHHH----CCeEEEEecCc-hHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45578999999 43321 11 112222 24788888876 6554442 23344433 23333
Q ss_pred hhcceEEEEEcCCC
Q 036659 101 VFDYMIVVFTGGDE 114 (300)
Q Consensus 101 i~~y~IVlFT~gD~ 114 (300)
.+..-||++.-+.
T Consensus 169 -~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 169 -LRLLGILVTMYDG 181 (257)
T ss_dssp -CEEEEEEEESBCT
T ss_pred -ceEEEEEEEeECC
Confidence 2333477787654
No 265
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=21.74 E-value=3.4e+02 Score=27.51 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=35.4
Q ss_pred hhhhhhHHHHHHHHHHHhHHhhcchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHhH
Q 036659 230 KVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRET 285 (300)
Q Consensus 230 ~~~~~~l~~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~~i~~lre~le~~~r~~ 285 (300)
+++++.-+.+.+|-.-|..|.+.|-+.|. +.-..|.+.|..|++-.|.++...
T Consensus 160 ~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~---~mi~~yr~k~~aL~~aIe~Er~~~ 212 (526)
T 3iyk_A 160 KILTEEDLQMRRLATALQKEIGERTHAET---VMVKEYRDKIDALKNAIEVERDGM 212 (526)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcHHHH---HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444667777777777666666653 344578889999998888776443
No 266
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=21.45 E-value=1.7e+02 Score=28.81 Aligned_cols=69 Identities=10% Similarity=0.047 Sum_probs=45.1
Q ss_pred ccCC-CCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659 43 RLFD-FSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115 (300)
Q Consensus 43 glfd-~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L 115 (300)
|+|. ...+.-.+...|.+-.....++...++++.-+|.|. +..-+.+.++-+.+++++++||+.-.|+.
T Consensus 156 ~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~----~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p 225 (469)
T 2c61_A 156 PIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN----EEAQYFMSDFEKTGALERAVVFLNLADDP 225 (469)
T ss_dssp CEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH----HHHHHHHHHHHHHSGGGGEEEEEEETTSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc----HHHHHHHHHHHhccCccceEEEEECCCCC
Confidence 5663 334555666788887776556544444444555232 34555666777899999999999988863
No 267
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=21.20 E-value=2.7e+02 Score=22.90 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=26.0
Q ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHhch-hhhcceEEEEEcCCCCC-CCcccHHHhhhh
Q 036659 70 HAVLVVFSVRSRFSQEEEAALHSWQTLFGK-NVFDYMIVVFTGGDELE-DNDETLEDYLGR 128 (300)
Q Consensus 70 HA~LLV~~v~~rfT~EE~~al~~lq~lFG~-~i~~y~IVlFT~gD~Le-~~~~tledyl~~ 128 (300)
+.+|+|+..+ ......+..+.+.+.. .-.+ ..||++.-+.-. .....+.+++.+
T Consensus 92 D~viiv~~~~----~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~~~~~~~~l~~ 147 (209)
T 3cwq_A 92 DLLVIPSTPD----ALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKDGDEARQLLTT 147 (209)
T ss_dssp SEEEEEECSS----HHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCHHHHHHHHHHH
T ss_pred CEEEEEecCC----chhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchHHHHHHHHHHH
Confidence 4677777655 3333444443344433 1123 567888766433 211234555543
No 268
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.15 E-value=2.9e+02 Score=21.31 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=16.0
Q ss_pred CChHHHHHHHHhhhhhHHHHh
Q 036659 208 YTDDIFVELKLLFLPFVNDLE 228 (300)
Q Consensus 208 yt~e~f~e~e~~~~~~v~~~~ 228 (300)
.|.++|..++..++.-|+.+.
T Consensus 3 MS~ElleqLE~KIq~avdtI~ 23 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT 23 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 467899999988888776544
No 269
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.83 E-value=3.2e+02 Score=21.72 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=24.6
Q ss_pred HHHHHHHHHhHHhhcchHHHHHHHHHHHhcHH
Q 036659 238 ETSRLEQQLTEEQAAPLKVEEAAQLAQMKSND 269 (300)
Q Consensus 238 ~~~~lE~q~~~eq~a~le~e~~~~~~~~~~~~ 269 (300)
++..|-..|.+|++.+.++|.....+..+.++
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888777766665554
No 270
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=20.72 E-value=52 Score=31.58 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659 27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR 79 (300)
Q Consensus 27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~ 79 (300)
..+.++||| |+.......+.++......+ .+.+++|+|+...
T Consensus 86 ~~i~lvDtp-------Gl~~~as~~~glg~~~l~~i----r~aD~Il~VvD~~ 127 (396)
T 2ohf_A 86 AFLNVVDIA-------GLVKGAHNGQGLGNAFLSHI----SACDGIFHLTRAF 127 (396)
T ss_dssp CEEEEEECC-------C-----------CCHHHHHH----HTSSSEEEEEEC-
T ss_pred cccEEEECC-------CcccccchhhHHHHHHHHHH----HhcCeEEEEEecC
Confidence 469999999 87653221122222222222 3678999999864
No 271
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=20.08 E-value=78 Score=21.79 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHhchhhh
Q 036659 80 SRFSQEEEAALHSWQTLFGKNVF 102 (300)
Q Consensus 80 ~rfT~EE~~al~~lq~lFG~~i~ 102 (300)
.+||+||...|..+...||..-|
T Consensus 9 ~~Wt~eED~~L~~~v~~~G~~~W 31 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQFGQQDW 31 (60)
T ss_dssp SCCCHHHHHHHHHHHHHTCTTCH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCH
Confidence 48999999999999999996433
No 272
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=20.03 E-value=2.3e+02 Score=26.50 Aligned_cols=50 Identities=12% Similarity=-0.015 Sum_probs=29.0
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659 67 DGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED 117 (300)
Q Consensus 67 pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~ 117 (300)
.|.|++++|+.+..+| .+....++.+........-+--++|+-++-+|.+
T Consensus 71 r~a~~~IlV~Ditd~~-~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 71 KSVGALVYVIDSQDEY-INAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp TTCSEEEEECCCSSCT-THHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred cCCCEEEEEEECCchH-HHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 5999999999998773 3333333332221111112345777777766765
Done!