BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036661
         (615 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
           Domain Bound To A Promoter Sequence Reveals A Unique C-
           Terminal Beta-Hairpin Conformation
 pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
           Domain Bound To A Promoter Sequence Reveals A Unique C-
           Terminal Beta-Hairpin Conformation
 pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
           Domain Bound To A Promoter Sequence Reveals A Unique C-
           Terminal Beta-Hairpin Conformation
 pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
           Domain Bound To A Promoter Sequence Reveals A Unique C-
           Terminal Beta-Hairpin Conformation
          Length = 131

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 20  NQWNSQIREAVDKNEAHKALLLFRRMKK 47
           N+WNS I + +  N  HK +LL  R KK
Sbjct: 93  NRWNSSISKRISTNSNHKEILLPDRSKK 120


>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
          Length = 246

 Score = 28.9 bits (63), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 110 KLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQA 153
           KL D   ++ +AS N ++ GF+Q G +     +    +L GI A
Sbjct: 119 KLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMA 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,887,252
Number of Sequences: 62578
Number of extensions: 710066
Number of successful extensions: 1725
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1723
Number of HSP's gapped (non-prelim): 2
length of query: 615
length of database: 14,973,337
effective HSP length: 105
effective length of query: 510
effective length of database: 8,402,647
effective search space: 4285349970
effective search space used: 4285349970
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)