Query 036661
Match_columns 615
No_of_seqs 620 out of 2900
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 04:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.4E-92 1.6E-96 753.7 68.7 606 5-615 139-744 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.9E-77 4E-82 642.5 64.4 574 15-596 48-624 (857)
3 PLN03081 pentatricopeptide (PP 100.0 4.2E-74 9.1E-79 601.9 58.1 496 118-615 85-581 (697)
4 PLN03081 pentatricopeptide (PP 100.0 9.6E-67 2.1E-71 546.4 53.7 472 17-494 86-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.3E-64 4.9E-69 529.5 57.1 505 50-557 366-909 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.3E-64 2.8E-69 531.3 52.5 496 21-523 372-907 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-36 5.6E-41 333.4 60.8 558 22-592 298-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-35 2.4E-40 328.4 60.0 558 21-590 331-899 (899)
9 PRK11447 cellulose synthase su 100.0 1.7E-27 3.6E-32 262.6 59.6 568 5-590 50-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.1E-26 2.5E-31 256.0 56.5 562 22-595 31-704 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 4.7E-24 1E-28 224.3 57.0 539 32-593 57-708 (987)
12 PRK09782 bacteriophage N4 rece 100.0 6.9E-23 1.5E-27 215.6 55.2 550 19-593 78-742 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 6.7E-23 1.4E-27 191.4 35.7 451 125-588 53-516 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 3.8E-22 8.2E-27 186.4 28.7 420 161-593 54-487 (966)
15 KOG2002 TPR-containing nuclear 99.9 4.3E-20 9.2E-25 181.9 43.8 565 21-594 164-801 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-20 2.8E-25 195.6 40.1 422 123-592 130-572 (615)
17 KOG2002 TPR-containing nuclear 99.9 9.7E-19 2.1E-23 172.5 43.0 555 28-594 137-748 (1018)
18 PRK15174 Vi polysaccharide exp 99.9 7.1E-19 1.5E-23 181.7 39.0 371 201-592 16-404 (656)
19 PRK11788 tetratricopeptide rep 99.9 3.9E-20 8.5E-25 182.6 28.6 292 302-599 44-355 (389)
20 PRK10049 pgaA outer membrane p 99.9 9.8E-19 2.1E-23 184.7 39.3 399 155-593 15-458 (765)
21 TIGR00990 3a0801s09 mitochondr 99.9 4.7E-18 1E-22 176.5 39.6 421 92-561 130-575 (615)
22 PRK15174 Vi polysaccharide exp 99.9 1.6E-18 3.6E-23 179.0 35.6 331 258-595 42-385 (656)
23 PRK10049 pgaA outer membrane p 99.9 1.5E-17 3.4E-22 175.7 43.2 412 119-566 14-465 (765)
24 PRK11788 tetratricopeptide rep 99.8 1.9E-18 4.2E-23 170.5 28.6 220 297-522 111-344 (389)
25 PRK14574 hmsH outer membrane p 99.8 3.4E-16 7.4E-21 162.0 44.4 437 100-565 45-521 (822)
26 KOG4422 Uncharacterized conser 99.8 1.1E-15 2.4E-20 137.4 38.2 442 21-523 118-588 (625)
27 PRK14574 hmsH outer membrane p 99.8 1.2E-15 2.6E-20 158.0 44.1 439 127-593 41-515 (822)
28 KOG2003 TPR repeat-containing 99.8 2.3E-16 5E-21 142.7 30.8 272 301-577 427-709 (840)
29 KOG0495 HAT repeat protein [RN 99.8 7.5E-14 1.6E-18 132.4 46.1 459 133-607 389-894 (913)
30 KOG0495 HAT repeat protein [RN 99.8 3.3E-13 7.2E-18 128.1 50.1 438 126-570 412-893 (913)
31 KOG2076 RNA polymerase III tra 99.8 5.3E-14 1.2E-18 138.7 45.0 566 26-593 146-851 (895)
32 KOG2076 RNA polymerase III tra 99.8 4.1E-14 9E-19 139.4 42.3 527 64-593 149-771 (895)
33 KOG4422 Uncharacterized conser 99.8 2.2E-15 4.7E-20 135.6 29.9 369 12-426 201-593 (625)
34 KOG2003 TPR repeat-containing 99.8 9.8E-16 2.1E-20 138.7 25.5 431 157-593 200-691 (840)
35 PF13429 TPR_15: Tetratricopep 99.7 2.6E-17 5.7E-22 153.4 10.3 256 330-590 14-276 (280)
36 KOG0547 Translocase of outer m 99.7 1.6E-13 3.4E-18 126.0 30.0 215 370-589 337-564 (606)
37 KOG4318 Bicoid mRNA stability 99.7 8.7E-13 1.9E-17 129.6 36.8 532 40-595 11-598 (1088)
38 KOG4318 Bicoid mRNA stability 99.7 7.1E-13 1.5E-17 130.2 32.6 563 15-596 22-813 (1088)
39 KOG1915 Cell cycle control pro 99.6 6.7E-11 1.5E-15 108.5 40.6 462 87-557 71-585 (677)
40 PRK10747 putative protoheme IX 99.6 3.9E-13 8.6E-18 131.1 26.9 275 306-590 97-389 (398)
41 KOG1915 Cell cycle control pro 99.6 1.2E-11 2.7E-16 113.2 33.1 395 199-601 82-510 (677)
42 KOG2047 mRNA splicing factor [ 99.6 4.8E-10 1E-14 107.0 44.1 546 21-584 104-716 (835)
43 KOG1173 Anaphase-promoting com 99.6 5.4E-12 1.2E-16 118.3 30.6 277 290-569 241-530 (611)
44 PRK10747 putative protoheme IX 99.6 6.4E-12 1.4E-16 122.7 32.6 248 304-558 129-391 (398)
45 TIGR00540 hemY_coli hemY prote 99.6 2.1E-12 4.5E-17 126.9 28.3 278 306-590 97-398 (409)
46 KOG1155 Anaphase-promoting com 99.6 2.2E-11 4.8E-16 111.4 32.0 255 331-590 234-494 (559)
47 KOG1126 DNA-binding cell divis 99.6 4E-13 8.7E-18 128.5 21.7 277 308-594 334-623 (638)
48 KOG1126 DNA-binding cell divis 99.6 4.6E-13 1E-17 128.1 21.9 281 273-563 334-626 (638)
49 KOG1155 Anaphase-promoting com 99.6 1.7E-10 3.7E-15 105.7 37.0 244 270-521 239-491 (559)
50 TIGR00540 hemY_coli hemY prote 99.6 1.1E-11 2.5E-16 121.7 31.5 254 300-556 125-398 (409)
51 KOG0547 Translocase of outer m 99.6 3.6E-11 7.7E-16 110.8 31.5 402 123-559 118-568 (606)
52 PF13429 TPR_15: Tetratricopep 99.5 2E-14 4.3E-19 134.1 9.4 227 364-593 13-245 (280)
53 KOG3785 Uncharacterized conser 99.5 1E-10 2.2E-15 103.4 31.0 447 66-565 34-497 (557)
54 TIGR02521 type_IV_pilW type IV 99.5 2.9E-12 6.2E-17 117.0 21.3 199 392-591 29-232 (234)
55 KOG1173 Anaphase-promoting com 99.5 1.1E-10 2.4E-15 109.7 31.3 261 327-593 247-520 (611)
56 COG3071 HemY Uncharacterized e 99.5 9.2E-11 2E-15 105.8 28.6 285 236-555 97-388 (400)
57 KOG1174 Anaphase-promoting com 99.5 1.3E-09 2.8E-14 98.6 34.4 309 254-568 190-511 (564)
58 KOG4162 Predicted calmodulin-b 99.5 2.7E-10 5.8E-15 111.2 32.0 411 182-603 315-794 (799)
59 COG2956 Predicted N-acetylgluc 99.5 8.6E-11 1.9E-15 102.7 25.0 189 298-487 74-276 (389)
60 COG2956 Predicted N-acetylgluc 99.5 6.8E-11 1.5E-15 103.3 23.7 290 306-600 48-356 (389)
61 COG3071 HemY Uncharacterized e 99.4 2.8E-10 6.1E-15 102.7 28.1 285 133-451 97-387 (400)
62 KOG2047 mRNA splicing factor [ 99.4 2.1E-08 4.5E-13 96.1 40.8 493 89-591 102-687 (835)
63 KOG2376 Signal recognition par 99.4 2.9E-09 6.3E-14 100.9 33.4 436 130-588 22-517 (652)
64 KOG1156 N-terminal acetyltrans 99.4 9.7E-08 2.1E-12 91.9 41.9 553 28-594 50-691 (700)
65 KOG1840 Kinesin light chain [C 99.4 1.4E-10 3E-15 112.6 23.1 232 359-590 199-478 (508)
66 PF12569 NARP1: NMDA receptor- 99.4 7.1E-09 1.5E-13 102.2 35.1 45 543-587 472-516 (517)
67 COG3063 PilF Tfp pilus assembl 99.4 8.1E-11 1.8E-15 98.1 17.5 162 427-593 37-204 (250)
68 PRK12370 invasion protein regu 99.4 2.3E-10 5E-15 116.9 24.9 245 339-593 276-537 (553)
69 KOG1129 TPR repeat-containing 99.3 2.9E-11 6.3E-16 105.6 14.3 231 328-593 227-460 (478)
70 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-10 3.1E-15 108.2 19.6 189 396-593 66-267 (296)
71 KOG4162 Predicted calmodulin-b 99.3 6.4E-08 1.4E-12 95.0 37.9 134 426-563 651-789 (799)
72 KOG1129 TPR repeat-containing 99.3 4.8E-11 1E-15 104.2 15.0 192 398-593 227-426 (478)
73 KOG3785 Uncharacterized conser 99.3 5E-08 1.1E-12 86.7 33.7 216 374-597 269-496 (557)
74 PRK12370 invasion protein regu 99.3 2.2E-10 4.8E-15 117.1 22.0 212 373-592 275-503 (553)
75 KOG3616 Selective LIM binding 99.3 8.8E-09 1.9E-13 99.9 30.5 193 366-585 739-931 (1636)
76 KOG1156 N-terminal acetyltrans 99.3 3.1E-08 6.7E-13 95.2 32.7 115 493-607 366-489 (700)
77 TIGR02521 type_IV_pilW type IV 99.3 8.5E-10 1.9E-14 100.6 22.1 163 395-559 66-234 (234)
78 KOG0985 Vesicle coat protein c 99.3 3.1E-06 6.6E-11 85.8 49.0 470 92-588 609-1246(1666)
79 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-11 3.8E-16 79.4 6.1 50 118-167 1-50 (50)
80 PRK11189 lipoprotein NlpI; Pro 99.2 4.6E-09 9.9E-14 98.2 22.5 232 338-577 40-286 (296)
81 KOG3617 WD40 and TPR repeat-co 99.2 1.8E-06 4E-11 85.4 40.4 226 21-284 759-993 (1416)
82 KOG1174 Anaphase-promoting com 99.2 4.1E-07 8.9E-12 82.8 32.9 179 305-487 312-498 (564)
83 KOG1840 Kinesin light chain [C 99.2 2.1E-08 4.6E-13 97.6 25.9 235 294-556 200-478 (508)
84 PF13041 PPR_2: PPR repeat fam 99.2 6.3E-11 1.4E-15 76.8 5.8 50 221-270 1-50 (50)
85 KOG2376 Signal recognition par 99.1 1.6E-06 3.4E-11 82.9 35.2 124 24-150 17-140 (652)
86 COG3063 PilF Tfp pilus assembl 99.1 1.1E-08 2.5E-13 85.5 18.7 195 396-592 37-237 (250)
87 KOG1127 TPR repeat-containing 99.1 5.2E-07 1.1E-11 91.2 33.4 275 311-590 801-1103(1238)
88 KOG0985 Vesicle coat protein c 99.1 4.3E-06 9.4E-11 84.7 39.5 221 325-574 1105-1325(1666)
89 KOG1125 TPR repeat-containing 99.1 4.9E-09 1.1E-13 99.4 15.8 216 370-591 296-527 (579)
90 KOG3616 Selective LIM binding 99.1 2.4E-06 5.1E-11 83.6 34.0 354 195-587 737-1130(1636)
91 KOG0548 Molecular co-chaperone 99.1 1.1E-07 2.3E-12 89.7 23.9 401 163-593 10-457 (539)
92 PF04733 Coatomer_E: Coatomer 99.1 2.8E-09 6E-14 97.9 13.3 249 301-561 9-269 (290)
93 KOG4340 Uncharacterized conser 99.1 2E-07 4.4E-12 81.0 23.3 404 165-593 20-445 (459)
94 KOG3617 WD40 and TPR repeat-co 99.0 3.3E-06 7.2E-11 83.7 34.1 262 13-319 721-993 (1416)
95 KOG1127 TPR repeat-containing 99.0 3.3E-06 7.1E-11 85.6 34.4 430 16-452 489-994 (1238)
96 KOG0624 dsRNA-activated protei 99.0 3.5E-07 7.6E-12 81.2 24.2 296 261-563 41-376 (504)
97 KOG0548 Molecular co-chaperone 99.0 1.2E-06 2.6E-11 82.9 29.0 428 128-587 10-485 (539)
98 PF12569 NARP1: NMDA receptor- 99.0 1.9E-07 4.1E-12 92.3 25.0 303 162-488 11-333 (517)
99 KOG4340 Uncharacterized conser 99.0 1.9E-06 4.1E-11 75.1 27.5 315 92-422 13-338 (459)
100 TIGR03302 OM_YfiO outer membra 99.0 2.8E-08 6E-13 90.3 17.6 180 393-592 32-233 (235)
101 PF04733 Coatomer_E: Coatomer 99.0 6.3E-08 1.4E-12 89.0 19.8 246 332-592 9-266 (290)
102 PRK10370 formate-dependent nit 99.0 3.5E-08 7.6E-13 85.5 16.8 150 433-596 24-178 (198)
103 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.7E-11 85.3 29.7 296 295-592 8-337 (355)
104 PRK15359 type III secretion sy 98.9 1.3E-08 2.8E-13 83.4 11.4 105 466-572 30-136 (144)
105 KOG0624 dsRNA-activated protei 98.9 1.4E-06 3.1E-11 77.4 24.4 287 224-523 39-368 (504)
106 PRK04841 transcriptional regul 98.9 5.9E-06 1.3E-10 91.5 34.7 323 270-592 386-761 (903)
107 PRK15359 type III secretion sy 98.9 3.8E-08 8.3E-13 80.6 11.8 110 480-594 13-124 (144)
108 PRK15179 Vi polysaccharide bio 98.9 1.9E-07 4.1E-12 96.0 19.0 127 460-589 86-215 (694)
109 KOG1070 rRNA processing protei 98.8 5.3E-07 1.1E-11 94.2 19.9 199 391-594 1455-1666(1710)
110 cd05804 StaR_like StaR_like; a 98.8 1.1E-05 2.4E-10 78.6 28.7 266 325-592 7-294 (355)
111 COG5010 TadD Flp pilus assembl 98.8 4.6E-07 9.9E-12 77.9 15.8 155 429-586 70-226 (257)
112 KOG1128 Uncharacterized conser 98.8 1.1E-06 2.5E-11 86.0 19.6 219 357-593 396-618 (777)
113 PLN02789 farnesyltranstransfer 98.8 3.2E-06 6.9E-11 78.9 22.0 178 409-589 87-300 (320)
114 PRK04841 transcriptional regul 98.7 1.3E-05 2.9E-10 88.7 29.9 326 233-560 384-763 (903)
115 KOG1125 TPR repeat-containing 98.7 8.2E-07 1.8E-11 84.7 16.9 246 334-584 295-564 (579)
116 KOG3081 Vesicle coat complex C 98.7 1.3E-05 2.9E-10 69.0 22.4 250 302-562 17-276 (299)
117 PRK15363 pathogenicity island 98.7 1.6E-07 3.4E-12 75.2 10.2 97 496-592 35-133 (157)
118 PLN02789 farnesyltranstransfer 98.7 1.3E-06 2.8E-11 81.5 17.8 188 404-594 47-253 (320)
119 KOG1128 Uncharacterized conser 98.7 6E-07 1.3E-11 87.9 15.7 189 389-592 393-583 (777)
120 COG5010 TadD Flp pilus assembl 98.7 1.7E-06 3.6E-11 74.6 16.5 154 398-554 70-228 (257)
121 PRK10370 formate-dependent nit 98.7 2.3E-06 4.9E-11 74.3 17.8 153 401-564 23-180 (198)
122 TIGR02552 LcrH_SycD type III s 98.7 2.7E-07 5.9E-12 75.5 10.9 97 497-593 18-116 (135)
123 COG4783 Putative Zn-dependent 98.7 2.1E-05 4.6E-10 74.0 24.1 150 425-596 306-459 (484)
124 KOG3060 Uncharacterized conser 98.6 4E-06 8.6E-11 71.6 17.2 169 397-568 55-231 (289)
125 KOG3060 Uncharacterized conser 98.6 2.7E-06 5.9E-11 72.6 15.0 167 426-596 53-225 (289)
126 COG4783 Putative Zn-dependent 98.6 5.5E-06 1.2E-10 77.8 18.5 124 467-592 313-438 (484)
127 TIGR03302 OM_YfiO outer membra 98.6 2.5E-06 5.5E-11 77.5 16.1 184 356-560 30-235 (235)
128 PRK14720 transcript cleavage f 98.6 1.9E-05 4.2E-10 82.3 23.1 233 292-573 30-268 (906)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.2E-06 2.6E-11 83.2 12.5 124 461-589 170-295 (395)
130 KOG1070 rRNA processing protei 98.5 1.9E-05 4.1E-10 83.2 21.9 227 358-588 1457-1697(1710)
131 PRK15179 Vi polysaccharide bio 98.5 1.9E-05 4.2E-10 81.5 21.1 137 424-565 85-225 (694)
132 TIGR02552 LcrH_SycD type III s 98.5 3.8E-06 8.2E-11 68.7 12.5 115 447-565 5-122 (135)
133 KOG1914 mRNA cleavage and poly 98.5 0.0017 3.6E-08 62.3 36.0 173 340-513 347-527 (656)
134 PF09976 TPR_21: Tetratricopep 98.5 4.2E-06 9.1E-11 69.0 12.6 115 473-588 24-144 (145)
135 PF12854 PPR_1: PPR repeat 98.4 3.1E-07 6.7E-12 53.1 3.7 32 185-216 2-33 (34)
136 PF12854 PPR_1: PPR repeat 98.4 8.2E-07 1.8E-11 51.3 4.2 32 389-420 2-33 (34)
137 KOG2053 Mitochondrial inherita 98.3 0.005 1.1E-07 62.9 38.7 158 362-523 439-606 (932)
138 TIGR02795 tol_pal_ybgF tol-pal 98.3 4.3E-06 9.2E-11 66.6 9.7 95 499-593 5-107 (119)
139 PF13414 TPR_11: TPR repeat; P 98.3 8E-07 1.7E-11 62.5 4.6 66 527-592 2-68 (69)
140 PF13432 TPR_16: Tetratricopep 98.3 9.6E-07 2.1E-11 61.2 4.9 60 534-593 3-62 (65)
141 cd00189 TPR Tetratricopeptide 98.3 3.7E-06 8.1E-11 63.9 8.8 94 499-592 3-98 (100)
142 PRK14720 transcript cleavage f 98.3 0.00026 5.7E-09 74.1 24.4 170 221-454 29-198 (906)
143 PF09976 TPR_21: Tetratricopep 98.3 4.9E-05 1.1E-09 62.6 15.6 125 428-555 15-145 (145)
144 COG3898 Uncharacterized membra 98.3 0.002 4.4E-08 59.1 25.6 291 296-602 85-401 (531)
145 PF12895 Apc3: Anaphase-promot 98.3 3.9E-07 8.4E-12 66.9 1.7 77 510-587 3-83 (84)
146 PLN03088 SGT1, suppressor of 98.2 2.9E-06 6.2E-11 81.3 7.5 109 465-575 7-117 (356)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.6E-05 1E-09 72.7 15.3 125 395-523 170-295 (395)
148 KOG3081 Vesicle coat complex C 98.2 0.00024 5.3E-09 61.5 17.9 246 331-592 15-272 (299)
149 KOG0553 TPR repeat-containing 98.2 3.3E-06 7.2E-11 74.3 6.9 110 467-579 88-200 (304)
150 COG4235 Cytochrome c biogenesi 98.2 2.5E-05 5.4E-10 69.4 12.1 108 493-600 153-265 (287)
151 KOG1914 mRNA cleavage and poly 98.2 0.0071 1.5E-07 58.2 36.5 211 375-588 309-536 (656)
152 KOG0553 TPR repeat-containing 98.2 1.1E-05 2.3E-10 71.2 9.3 97 433-533 89-187 (304)
153 KOG0550 Molecular chaperone (D 98.2 4.1E-05 8.9E-10 70.3 13.2 164 433-600 177-359 (486)
154 KOG2053 Mitochondrial inherita 98.2 0.012 2.7E-07 60.2 41.5 520 30-589 20-606 (932)
155 COG4700 Uncharacterized protei 98.1 0.00021 4.6E-09 58.2 15.1 152 438-593 69-224 (251)
156 PRK02603 photosystem I assembl 98.1 1.8E-05 4E-10 67.5 9.6 97 497-593 36-151 (172)
157 TIGR02795 tol_pal_ybgF tol-pal 98.1 3.8E-05 8.3E-10 61.1 10.6 104 462-565 4-113 (119)
158 TIGR00756 PPR pentatricopeptid 98.1 6.9E-06 1.5E-10 48.4 4.6 34 21-54 2-35 (35)
159 TIGR00756 PPR pentatricopeptid 98.1 5.8E-06 1.3E-10 48.7 4.3 35 121-155 1-35 (35)
160 PF13812 PPR_3: Pentatricopept 98.1 8.8E-06 1.9E-10 47.5 4.4 33 121-153 2-34 (34)
161 PF13371 TPR_9: Tetratricopept 98.0 1.3E-05 2.9E-10 57.0 6.1 60 535-594 2-61 (73)
162 PF14559 TPR_19: Tetratricopep 98.0 4E-06 8.6E-11 58.7 3.2 56 539-594 2-57 (68)
163 CHL00033 ycf3 photosystem I as 98.0 3E-05 6.5E-10 65.9 8.9 93 496-588 35-139 (168)
164 PLN03088 SGT1, suppressor of 98.0 6E-05 1.3E-09 72.3 11.8 101 431-535 8-110 (356)
165 PRK15331 chaperone protein Sic 98.0 6.1E-05 1.3E-09 60.8 9.4 90 501-590 42-133 (165)
166 COG4700 Uncharacterized protei 98.0 0.00022 4.9E-09 58.0 12.3 109 483-591 76-189 (251)
167 PF13432 TPR_16: Tetratricopep 98.0 1.3E-05 2.8E-10 55.5 4.4 61 502-562 3-65 (65)
168 PRK02603 photosystem I assembl 98.0 0.00024 5.1E-09 60.6 13.1 129 425-577 35-166 (172)
169 PRK10153 DNA-binding transcrip 97.9 0.00033 7.1E-09 70.3 15.9 139 423-563 335-488 (517)
170 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.5E-10 46.4 4.1 32 21-52 3-34 (34)
171 cd00189 TPR Tetratricopeptide 97.9 0.00011 2.5E-09 55.4 9.8 93 465-559 5-99 (100)
172 PF12895 Apc3: Anaphase-promot 97.9 3.9E-05 8.5E-10 56.2 6.7 80 438-521 2-83 (84)
173 PF13431 TPR_17: Tetratricopep 97.9 5.3E-06 1.1E-10 47.9 1.5 33 551-583 2-34 (34)
174 PRK10803 tol-pal system protei 97.8 9.2E-05 2E-09 67.0 9.2 85 508-592 155-247 (263)
175 PF04840 Vps16_C: Vps16, C-ter 97.8 0.032 6.9E-07 52.3 26.4 109 398-523 181-289 (319)
176 PF13414 TPR_11: TPR repeat; P 97.8 5E-05 1.1E-09 53.3 5.1 64 496-559 3-69 (69)
177 PF14559 TPR_19: Tetratricopep 97.8 2E-05 4.3E-10 55.1 2.9 50 472-523 3-52 (68)
178 PF05843 Suf: Suppressor of fo 97.7 0.00079 1.7E-08 62.3 13.7 133 426-561 2-140 (280)
179 PRK10866 outer membrane biogen 97.7 0.0041 8.9E-08 56.0 17.7 173 400-589 38-239 (243)
180 PF07079 DUF1347: Protein of u 97.7 0.047 1E-06 51.7 35.5 195 324-523 298-522 (549)
181 PF12688 TPR_5: Tetratrico pep 97.7 0.0003 6.5E-09 54.7 8.8 88 502-589 7-102 (120)
182 PRK10153 DNA-binding transcrip 97.7 0.0012 2.5E-08 66.5 15.0 136 455-594 332-485 (517)
183 KOG1538 Uncharacterized conser 97.7 0.0093 2E-07 58.6 19.6 53 461-523 748-800 (1081)
184 PRK15363 pathogenicity island 97.7 0.0022 4.7E-08 51.8 13.1 97 423-523 33-130 (157)
185 PF08579 RPM2: Mitochondrial r 97.7 0.00054 1.2E-08 51.0 8.8 78 125-202 30-116 (120)
186 CHL00033 ycf3 photosystem I as 97.7 0.00082 1.8E-08 57.1 11.6 61 427-487 37-99 (168)
187 PF01535 PPR: PPR repeat; Int 97.6 6.9E-05 1.5E-09 42.5 3.4 31 121-151 1-31 (31)
188 KOG2041 WD40 repeat protein [G 97.6 0.049 1.1E-06 54.3 24.3 174 51-246 689-875 (1189)
189 PF14938 SNAP: Soluble NSF att 97.6 0.003 6.5E-08 58.8 15.7 91 431-522 120-222 (282)
190 PF01535 PPR: PPR repeat; Int 97.6 9.6E-05 2.1E-09 41.9 3.6 30 21-50 2-31 (31)
191 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00027 5.8E-09 67.1 7.9 65 527-591 74-141 (453)
192 PF14938 SNAP: Soluble NSF att 97.6 0.0037 8E-08 58.2 15.4 160 427-588 77-263 (282)
193 PF13428 TPR_14: Tetratricopep 97.5 0.0001 2.2E-09 45.9 3.1 42 529-570 2-43 (44)
194 PF05843 Suf: Suppressor of fo 97.5 0.00081 1.8E-08 62.2 10.1 130 461-592 2-137 (280)
195 KOG0543 FKBP-type peptidyl-pro 97.5 0.0011 2.4E-08 61.6 10.7 97 497-593 258-357 (397)
196 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.098 2.1E-06 49.5 28.7 128 462-590 399-530 (660)
197 PF13371 TPR_9: Tetratricopept 97.5 0.00028 6E-09 50.1 5.2 65 503-567 2-68 (73)
198 PF10037 MRP-S27: Mitochondria 97.5 0.0013 2.7E-08 63.4 11.0 118 86-203 63-186 (429)
199 COG3898 Uncharacterized membra 97.5 0.097 2.1E-06 48.6 23.5 257 326-591 84-358 (531)
200 KOG0550 Molecular chaperone (D 97.4 0.0069 1.5E-07 56.3 14.9 160 403-568 178-360 (486)
201 PRK10803 tol-pal system protei 97.4 0.0018 3.8E-08 58.8 11.2 101 462-562 145-251 (263)
202 KOG2280 Vacuolar assembly/sort 97.4 0.18 3.8E-06 51.1 26.3 155 28-183 398-574 (829)
203 PF10037 MRP-S27: Mitochondria 97.4 0.0015 3.3E-08 62.8 11.1 119 188-306 64-186 (429)
204 PF08579 RPM2: Mitochondrial r 97.4 0.0029 6.3E-08 47.2 9.8 80 327-406 28-116 (120)
205 PF12688 TPR_5: Tetratrico pep 97.4 0.0058 1.3E-07 47.6 12.0 94 430-523 6-102 (120)
206 PF04840 Vps16_C: Vps16, C-ter 97.4 0.14 3E-06 48.2 26.5 110 462-588 179-288 (319)
207 COG4235 Cytochrome c biogenesi 97.3 0.0072 1.6E-07 54.2 13.6 117 443-562 140-261 (287)
208 KOG1130 Predicted G-alpha GTPa 97.3 0.0011 2.4E-08 61.1 8.6 129 462-590 197-343 (639)
209 PF13281 DUF4071: Domain of un 97.3 0.04 8.7E-07 52.1 18.6 158 400-560 147-337 (374)
210 PF13525 YfiO: Outer membrane 97.2 0.011 2.3E-07 51.9 13.6 50 534-583 147-199 (203)
211 PF13424 TPR_12: Tetratricopep 97.2 0.00027 5.9E-09 50.9 3.0 61 530-590 7-74 (78)
212 PRK10866 outer membrane biogen 97.2 0.043 9.3E-07 49.5 17.4 54 300-353 39-98 (243)
213 PF13512 TPR_18: Tetratricopep 97.2 0.0068 1.5E-07 48.1 10.4 91 502-592 16-129 (142)
214 KOG2796 Uncharacterized conser 97.2 0.044 9.6E-07 47.8 15.9 134 428-561 180-319 (366)
215 PF07079 DUF1347: Protein of u 97.2 0.24 5.1E-06 47.2 33.2 59 530-589 462-522 (549)
216 PRK11906 transcriptional regul 97.1 0.0064 1.4E-07 58.2 11.2 145 440-587 273-432 (458)
217 KOG0543 FKBP-type peptidyl-pro 97.1 0.0018 3.9E-08 60.2 7.2 66 528-593 257-322 (397)
218 KOG1130 Predicted G-alpha GTPa 97.0 0.0062 1.3E-07 56.4 9.7 130 427-556 197-343 (639)
219 KOG2280 Vacuolar assembly/sort 97.0 0.53 1.2E-05 47.9 31.2 328 228-588 442-796 (829)
220 KOG1258 mRNA processing protei 97.0 0.47 1E-05 47.1 30.4 181 393-576 296-489 (577)
221 PF13525 YfiO: Outer membrane 97.0 0.016 3.5E-07 50.8 12.1 144 429-593 9-172 (203)
222 KOG2796 Uncharacterized conser 96.9 0.054 1.2E-06 47.3 14.4 135 462-597 179-321 (366)
223 KOG2041 WD40 repeat protein [G 96.9 0.54 1.2E-05 47.4 26.3 203 15-249 689-904 (1189)
224 PF06239 ECSIT: Evolutionarily 96.9 0.015 3.2E-07 49.5 10.4 96 314-409 35-153 (228)
225 PF13424 TPR_12: Tetratricopep 96.8 0.0012 2.6E-08 47.5 3.3 59 499-557 8-75 (78)
226 COG1729 Uncharacterized protei 96.8 0.0067 1.5E-07 53.7 8.3 101 462-563 144-250 (262)
227 KOG4555 TPR repeat-containing 96.8 0.0048 1E-07 47.2 6.4 87 506-592 53-145 (175)
228 PF03704 BTAD: Bacterial trans 96.8 0.015 3.2E-07 48.0 10.2 68 530-597 64-136 (146)
229 PF06239 ECSIT: Evolutionarily 96.8 0.015 3.2E-07 49.6 9.8 98 211-308 35-153 (228)
230 PF09205 DUF1955: Domain of un 96.8 0.066 1.4E-06 41.4 12.1 141 435-594 12-152 (161)
231 COG0457 NrfG FOG: TPR repeat [ 96.7 0.43 9.4E-06 43.1 25.7 194 395-592 60-266 (291)
232 COG3118 Thioredoxin domain-con 96.7 0.079 1.7E-06 47.5 13.9 120 469-591 143-265 (304)
233 PRK15331 chaperone protein Sic 96.7 0.045 9.7E-07 44.7 11.4 98 431-531 43-140 (165)
234 KOG4234 TPR repeat-containing 96.6 0.0055 1.2E-07 50.9 5.5 105 467-571 102-211 (271)
235 PF10300 DUF3808: Protein of u 96.5 0.12 2.7E-06 51.8 15.9 160 429-591 192-376 (468)
236 PF03704 BTAD: Bacterial trans 96.5 0.039 8.5E-07 45.5 10.4 72 427-499 64-139 (146)
237 PRK11906 transcriptional regul 96.4 0.14 3E-06 49.4 14.8 145 409-558 273-437 (458)
238 KOG1941 Acetylcholine receptor 96.4 0.024 5.3E-07 51.8 9.3 124 465-588 127-272 (518)
239 COG1729 Uncharacterized protei 96.4 0.027 5.8E-07 50.0 9.3 94 427-523 144-242 (262)
240 PRK11619 lytic murein transgly 96.4 1.6 3.6E-05 45.6 30.4 117 437-556 253-374 (644)
241 KOG1585 Protein required for f 96.4 0.6 1.3E-05 40.7 16.6 45 538-583 200-248 (308)
242 PF13512 TPR_18: Tetratricopep 96.3 0.1 2.2E-06 41.6 11.1 115 432-563 17-134 (142)
243 PF07719 TPR_2: Tetratricopept 96.2 0.01 2.3E-07 34.2 4.1 32 530-561 3-34 (34)
244 COG0457 NrfG FOG: TPR repeat [ 96.2 0.9 2E-05 40.9 24.2 196 361-560 61-268 (291)
245 PF12921 ATP13: Mitochondrial 96.1 0.079 1.7E-06 41.8 9.8 52 455-506 47-98 (126)
246 KOG2610 Uncharacterized conser 96.1 0.066 1.4E-06 48.6 9.9 159 437-598 115-283 (491)
247 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.5 3.2E-05 42.0 31.6 81 15-98 38-118 (660)
248 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.029 6.3E-07 53.8 8.2 61 497-557 76-141 (453)
249 PF00515 TPR_1: Tetratricopept 96.0 0.011 2.4E-07 34.0 3.5 31 530-560 3-33 (34)
250 KOG1538 Uncharacterized conser 96.0 0.73 1.6E-05 46.0 17.2 92 495-592 746-847 (1081)
251 COG4105 ComL DNA uptake lipopr 95.9 1.1 2.5E-05 39.6 17.5 59 533-591 172-233 (254)
252 PF04184 ST7: ST7 protein; In 95.9 0.58 1.3E-05 45.5 15.7 101 463-563 262-381 (539)
253 PF04184 ST7: ST7 protein; In 95.8 0.17 3.6E-06 49.0 12.2 144 435-590 178-323 (539)
254 COG4105 ComL DNA uptake lipopr 95.8 1.3 2.9E-05 39.2 19.7 169 392-562 33-238 (254)
255 COG3118 Thioredoxin domain-con 95.7 0.78 1.7E-05 41.4 14.9 145 434-580 143-290 (304)
256 smart00299 CLH Clathrin heavy 95.7 0.66 1.4E-05 37.8 14.0 126 428-573 10-136 (140)
257 KOG2610 Uncharacterized conser 95.6 0.32 7E-06 44.3 12.5 175 404-582 113-306 (491)
258 KOG3941 Intermediate in Toll s 95.6 0.058 1.3E-06 47.7 7.5 111 5-116 52-186 (406)
259 PF13176 TPR_7: Tetratricopept 95.5 0.019 4E-07 33.6 3.1 26 564-589 1-26 (36)
260 KOG2114 Vacuolar assembly/sort 95.5 3.9 8.4E-05 42.7 23.5 174 22-217 337-517 (933)
261 PF13281 DUF4071: Domain of un 95.4 0.84 1.8E-05 43.5 15.0 165 427-592 143-335 (374)
262 PF02259 FAT: FAT domain; Int 95.4 2 4.3E-05 41.7 18.7 151 423-575 144-305 (352)
263 PF10300 DUF3808: Protein of u 95.4 0.93 2E-05 45.6 16.4 23 466-488 311-333 (468)
264 PF04053 Coatomer_WDAD: Coatom 95.4 0.47 1E-05 46.9 14.0 161 25-217 267-429 (443)
265 KOG4555 TPR repeat-containing 95.4 0.044 9.5E-07 42.2 5.2 56 536-591 51-106 (175)
266 PF13428 TPR_14: Tetratricopep 95.3 0.024 5.2E-07 35.1 3.3 33 562-594 1-33 (44)
267 COG2976 Uncharacterized protei 95.3 1.2 2.7E-05 37.5 13.7 128 428-560 57-191 (207)
268 PF04053 Coatomer_WDAD: Coatom 95.1 0.48 1E-05 46.9 13.2 157 402-588 269-428 (443)
269 KOG3941 Intermediate in Toll s 95.1 0.15 3.3E-06 45.1 8.5 98 108-205 53-173 (406)
270 PF08631 SPO22: Meiosis protei 95.0 3 6.6E-05 38.7 24.1 62 399-460 126-192 (278)
271 PF13181 TPR_8: Tetratricopept 95.0 0.038 8.2E-07 31.8 3.3 31 530-560 3-33 (34)
272 TIGR02561 HrpB1_HrpK type III 94.8 0.16 3.6E-06 40.5 7.2 53 540-592 22-74 (153)
273 KOG4648 Uncharacterized conser 94.8 0.065 1.4E-06 48.7 5.5 107 468-581 105-214 (536)
274 PF09613 HrpB1_HrpK: Bacterial 94.7 0.16 3.4E-06 41.4 7.1 72 507-578 21-94 (160)
275 COG4785 NlpI Lipoprotein NlpI, 94.6 1.9 4.2E-05 36.9 13.3 160 425-593 99-268 (297)
276 PF12921 ATP13: Mitochondrial 94.6 0.41 8.9E-06 37.8 9.1 49 355-403 48-97 (126)
277 KOG4234 TPR repeat-containing 94.5 0.27 5.8E-06 41.3 8.0 85 435-523 105-195 (271)
278 PF09613 HrpB1_HrpK: Bacterial 94.2 1.7 3.6E-05 35.6 11.9 19 505-523 53-71 (160)
279 PF07719 TPR_2: Tetratricopept 94.2 0.043 9.4E-07 31.5 2.2 31 563-593 2-32 (34)
280 PRK09687 putative lyase; Provi 94.1 4.9 0.00011 37.3 25.1 25 534-559 241-265 (280)
281 KOG1920 IkappaB kinase complex 94.1 11 0.00024 41.3 22.3 114 403-527 917-1030(1265)
282 COG4649 Uncharacterized protei 94.0 2.9 6.3E-05 34.5 14.8 129 426-556 60-195 (221)
283 smart00299 CLH Clathrin heavy 94.0 2.7 5.9E-05 34.1 14.0 86 22-115 10-95 (140)
284 KOG1585 Protein required for f 94.0 2.5 5.4E-05 37.0 13.1 145 395-552 92-251 (308)
285 PF09205 DUF1955: Domain of un 93.9 2.2 4.7E-05 33.4 11.1 138 233-391 12-152 (161)
286 PF00515 TPR_1: Tetratricopept 93.9 0.054 1.2E-06 31.1 2.2 31 563-593 2-32 (34)
287 KOG4648 Uncharacterized conser 93.8 0.1 2.2E-06 47.5 4.8 90 502-591 103-194 (536)
288 KOG0890 Protein kinase of the 93.8 19 0.0004 42.9 30.5 309 267-593 1392-1733(2382)
289 COG2976 Uncharacterized protei 93.5 1.8 4E-05 36.5 11.1 91 501-592 94-189 (207)
290 KOG1920 IkappaB kinase complex 93.5 14 0.00031 40.5 20.3 153 408-588 894-1052(1265)
291 PF07035 Mic1: Colon cancer-as 93.4 4 8.6E-05 34.0 15.1 57 296-352 92-148 (167)
292 COG4649 Uncharacterized protei 93.3 1.9 4.1E-05 35.5 10.5 128 461-590 60-195 (221)
293 KOG2114 Vacuolar assembly/sort 93.3 12 0.00027 39.3 26.5 54 501-555 710-763 (933)
294 KOG1308 Hsp70-interacting prot 93.3 0.07 1.5E-06 48.7 2.9 88 508-595 126-215 (377)
295 PF13176 TPR_7: Tetratricopept 93.3 0.13 2.8E-06 30.0 3.1 27 531-557 2-28 (36)
296 KOG4642 Chaperone-dependent E3 93.2 0.18 3.9E-06 43.6 5.0 82 509-590 23-106 (284)
297 PF06552 TOM20_plant: Plant sp 93.0 0.11 2.3E-06 43.1 3.3 108 476-593 7-138 (186)
298 PF07035 Mic1: Colon cancer-as 93.0 3.1 6.7E-05 34.6 11.7 135 38-184 13-149 (167)
299 PF13174 TPR_6: Tetratricopept 92.9 0.083 1.8E-06 30.0 1.9 28 565-592 3-30 (33)
300 KOG1941 Acetylcholine receptor 92.9 8.3 0.00018 36.1 19.6 162 326-487 85-273 (518)
301 PRK15180 Vi polysaccharide bio 92.7 2.2 4.8E-05 41.2 11.8 131 433-567 297-430 (831)
302 PF10602 RPN7: 26S proteasome 92.7 2.1 4.6E-05 36.4 10.9 96 122-217 38-140 (177)
303 PF07721 TPR_4: Tetratricopept 92.6 0.13 2.7E-06 27.4 2.2 24 563-586 2-25 (26)
304 KOG0545 Aryl-hydrocarbon recep 92.6 0.43 9.4E-06 41.5 6.5 59 534-592 236-294 (329)
305 PF13174 TPR_6: Tetratricopept 92.5 0.22 4.8E-06 28.1 3.4 31 531-561 3-33 (33)
306 KOG1586 Protein required for f 92.4 5.9 0.00013 34.6 12.8 99 466-564 119-231 (288)
307 KOG1258 mRNA processing protei 92.4 13 0.00029 37.4 31.9 126 21-149 47-180 (577)
308 PF10602 RPN7: 26S proteasome 92.3 3.7 8E-05 34.9 11.9 97 427-523 38-140 (177)
309 PF02259 FAT: FAT domain; Int 92.3 7.2 0.00016 37.8 15.9 67 527-593 145-215 (352)
310 COG3629 DnrI DNA-binding trans 92.2 0.52 1.1E-05 42.8 6.8 61 530-590 155-215 (280)
311 COG2909 MalT ATP-dependent tra 92.1 19 0.00041 38.3 23.8 219 370-588 426-685 (894)
312 PF13181 TPR_8: Tetratricopept 92.1 0.2 4.3E-06 28.6 2.8 30 563-592 2-31 (34)
313 COG3947 Response regulator con 91.8 8.6 0.00019 34.9 13.5 61 530-590 281-341 (361)
314 COG3629 DnrI DNA-binding trans 91.6 2.2 4.8E-05 38.9 10.1 79 426-505 154-236 (280)
315 PF14853 Fis1_TPR_C: Fis1 C-te 91.3 0.38 8.3E-06 30.9 3.7 36 531-566 4-39 (53)
316 PRK10941 hypothetical protein; 91.2 0.79 1.7E-05 41.8 7.0 63 531-593 184-246 (269)
317 PF13170 DUF4003: Protein of u 91.2 4.6 9.9E-05 37.7 12.1 92 207-300 120-224 (297)
318 PRK13800 putative oxidoreducta 91.1 29 0.00063 38.7 23.7 256 313-590 624-880 (897)
319 PF00637 Clathrin: Region in C 90.7 0.042 9.1E-07 45.1 -1.4 52 127-178 14-65 (143)
320 PF11207 DUF2989: Protein of u 90.6 3.9 8.4E-05 35.0 9.9 75 507-582 118-198 (203)
321 PRK15180 Vi polysaccharide bio 90.6 2 4.3E-05 41.5 9.1 135 401-538 296-435 (831)
322 PF13374 TPR_10: Tetratricopep 90.5 0.37 7.9E-06 29.1 3.1 27 564-590 4-30 (42)
323 KOG3364 Membrane protein invol 90.4 2.3 5E-05 33.4 7.7 72 493-564 29-107 (149)
324 COG1747 Uncharacterized N-term 90.0 21 0.00046 35.3 21.1 161 357-523 64-232 (711)
325 smart00028 TPR Tetratricopepti 89.8 0.73 1.6E-05 25.3 3.9 28 532-559 5-32 (34)
326 KOG1586 Protein required for f 89.6 14 0.0003 32.5 15.4 93 501-593 118-226 (288)
327 TIGR03504 FimV_Cterm FimV C-te 89.5 0.67 1.5E-05 28.4 3.5 28 566-593 3-30 (44)
328 KOG3807 Predicted membrane pro 89.2 3.7 8.1E-05 37.6 9.3 23 545-567 379-401 (556)
329 PF08631 SPO22: Meiosis protei 88.9 20 0.00043 33.3 24.4 100 158-258 87-192 (278)
330 COG4785 NlpI Lipoprotein NlpI, 88.8 1.3 2.8E-05 37.9 5.8 129 469-605 74-207 (297)
331 PF14561 TPR_20: Tetratricopep 88.8 0.72 1.6E-05 33.9 3.9 52 527-578 21-74 (90)
332 PF10345 Cohesin_load: Cohesin 88.7 35 0.00076 36.1 35.7 49 541-589 547-604 (608)
333 COG1747 Uncharacterized N-term 88.6 27 0.00059 34.6 20.8 176 391-574 63-251 (711)
334 PF13170 DUF4003: Protein of u 88.5 9.6 0.00021 35.6 12.0 63 341-403 160-226 (297)
335 KOG0276 Vesicle coat complex C 88.5 5 0.00011 40.2 10.3 100 201-319 648-747 (794)
336 PF00637 Clathrin: Region in C 88.3 0.81 1.8E-05 37.4 4.5 87 58-147 11-97 (143)
337 KOG4570 Uncharacterized conser 88.2 4.4 9.4E-05 37.0 8.9 100 185-288 59-165 (418)
338 PRK11619 lytic murein transgly 87.8 40 0.00088 35.7 36.1 82 502-583 413-497 (644)
339 PF04097 Nic96: Nup93/Nic96; 87.5 41 0.00089 35.5 21.7 21 506-526 515-535 (613)
340 PF09986 DUF2225: Uncharacteri 86.9 2 4.3E-05 37.8 6.3 67 530-596 120-199 (214)
341 COG4455 ImpE Protein of avirul 86.9 2.7 5.9E-05 36.1 6.6 62 500-561 5-68 (273)
342 KOG0376 Serine-threonine phosp 86.9 0.59 1.3E-05 45.1 3.1 99 467-568 11-112 (476)
343 COG4455 ImpE Protein of avirul 86.9 15 0.00031 32.0 10.8 127 428-563 4-140 (273)
344 PF13431 TPR_17: Tetratricopep 86.9 0.81 1.8E-05 26.2 2.6 24 86-109 10-33 (34)
345 PF02284 COX5A: Cytochrome c o 86.7 5.3 0.00011 29.7 7.1 60 443-504 28-87 (108)
346 KOG0276 Vesicle coat complex C 86.7 7.6 0.00016 39.0 10.4 38 305-345 598-635 (794)
347 KOG1550 Extracellular protein 86.6 44 0.00094 34.8 19.2 79 511-592 454-539 (552)
348 KOG4570 Uncharacterized conser 86.4 6.1 0.00013 36.2 8.8 48 440-487 115-162 (418)
349 PF04097 Nic96: Nup93/Nic96; 86.1 49 0.0011 34.9 17.2 27 461-487 325-354 (613)
350 TIGR02561 HrpB1_HrpK type III 86.0 17 0.00037 29.5 11.1 50 437-488 22-72 (153)
351 smart00028 TPR Tetratricopepti 86.0 1 2.3E-05 24.6 2.9 30 563-592 2-31 (34)
352 KOG4507 Uncharacterized conser 85.8 2.1 4.6E-05 42.5 6.2 99 472-573 619-721 (886)
353 PRK09687 putative lyase; Provi 85.7 30 0.00065 32.1 26.5 73 393-470 205-277 (280)
354 KOG2066 Vacuolar assembly/sort 85.4 53 0.0011 34.6 23.0 55 197-251 363-420 (846)
355 PF04910 Tcf25: Transcriptiona 85.3 27 0.00059 33.8 13.5 59 532-590 107-167 (360)
356 KOG1550 Extracellular protein 85.3 44 0.00096 34.8 16.0 114 475-594 308-429 (552)
357 PF04190 DUF410: Protein of un 85.2 30 0.00066 31.7 14.4 32 291-322 88-119 (260)
358 KOG1464 COP9 signalosome, subu 84.8 29 0.00063 31.2 17.4 218 327-550 68-325 (440)
359 PF13374 TPR_10: Tetratricopep 84.4 1.8 4E-05 25.9 3.6 29 529-557 3-31 (42)
360 KOG0551 Hsp90 co-chaperone CNS 84.0 5 0.00011 37.0 7.3 91 498-588 83-179 (390)
361 KOG2422 Uncharacterized conser 83.2 17 0.00036 36.6 10.9 50 437-487 250-311 (665)
362 PF07721 TPR_4: Tetratricopept 82.6 2.6 5.7E-05 22.2 3.2 20 501-520 6-25 (26)
363 COG5159 RPN6 26S proteasome re 82.4 39 0.00084 30.8 13.4 54 432-485 10-70 (421)
364 KOG4507 Uncharacterized conser 82.4 6.5 0.00014 39.3 7.9 135 457-594 568-708 (886)
365 cd00923 Cyt_c_Oxidase_Va Cytoc 82.2 18 0.00039 26.7 8.7 62 440-503 22-83 (103)
366 PF12862 Apc5: Anaphase-promot 82.2 4.2 9.1E-05 30.2 5.4 52 539-590 9-69 (94)
367 smart00386 HAT HAT (Half-A-TPR 81.9 1.8 4E-05 24.0 2.7 30 542-571 1-30 (33)
368 KOG2066 Vacuolar assembly/sort 81.1 78 0.0017 33.4 22.0 41 94-134 397-437 (846)
369 COG4976 Predicted methyltransf 81.1 2.7 5.8E-05 36.5 4.3 59 506-564 5-65 (287)
370 PF11207 DUF2989: Protein of u 79.9 14 0.0003 31.8 8.1 73 442-515 123-197 (203)
371 PF06552 TOM20_plant: Plant sp 79.7 4.5 9.7E-05 33.9 5.0 80 441-521 7-98 (186)
372 PF10579 Rapsyn_N: Rapsyn N-te 78.9 5.9 0.00013 27.8 4.6 47 472-518 18-65 (80)
373 KOG3364 Membrane protein invol 78.8 8.9 0.00019 30.3 6.0 69 525-593 29-102 (149)
374 COG5191 Uncharacterized conser 78.8 3.6 7.8E-05 37.5 4.5 81 491-571 102-185 (435)
375 TIGR02508 type_III_yscG type I 78.7 25 0.00053 26.2 8.9 86 69-158 20-105 (115)
376 PF09670 Cas_Cas02710: CRISPR- 78.5 32 0.00069 33.7 11.4 53 435-488 141-197 (379)
377 PRK13800 putative oxidoreducta 78.4 1.2E+02 0.0026 34.0 26.4 248 290-556 632-880 (897)
378 cd00923 Cyt_c_Oxidase_Va Cytoc 78.0 18 0.00039 26.7 7.0 45 138-182 25-69 (103)
379 KOG1464 COP9 signalosome, subu 77.7 54 0.0012 29.6 16.1 188 336-523 39-259 (440)
380 COG2912 Uncharacterized conser 76.9 10 0.00022 34.3 6.8 62 532-593 185-246 (269)
381 KOG3824 Huntingtin interacting 76.8 5.1 0.00011 36.4 4.9 62 507-568 127-190 (472)
382 COG4976 Predicted methyltransf 76.7 4.9 0.00011 34.9 4.6 51 470-523 5-56 (287)
383 PRK10941 hypothetical protein; 76.6 15 0.00032 33.8 8.0 65 501-565 186-252 (269)
384 KOG0889 Histone acetyltransfer 76.5 2.3E+02 0.005 36.3 19.5 21 197-217 2489-2509(3550)
385 TIGR02508 type_III_yscG type I 76.2 30 0.00064 25.8 10.0 61 401-464 46-106 (115)
386 PF10579 Rapsyn_N: Rapsyn N-te 75.9 8.7 0.00019 27.0 4.8 48 437-484 18-67 (80)
387 PF02284 COX5A: Cytochrome c o 75.6 23 0.0005 26.5 7.1 46 138-183 28-73 (108)
388 COG0790 FOG: TPR repeat, SEL1 75.5 71 0.0015 29.9 17.7 48 543-593 206-268 (292)
389 KOG0530 Protein farnesyltransf 75.4 63 0.0014 29.2 12.0 87 513-599 95-184 (318)
390 KOG0890 Protein kinase of the 74.3 2.2E+02 0.0047 34.9 33.6 105 461-569 1671-1796(2382)
391 PF07163 Pex26: Pex26 protein; 74.2 20 0.00044 32.5 7.8 22 61-82 125-146 (309)
392 PRK12798 chemotaxis protein; R 74.1 91 0.002 30.4 21.8 181 407-590 125-323 (421)
393 TIGR03504 FimV_Cterm FimV C-te 73.9 8.5 0.00018 23.6 3.9 25 126-150 5-29 (44)
394 PF14853 Fis1_TPR_C: Fis1 C-te 73.5 4.4 9.5E-05 26.1 2.8 31 564-594 3-33 (53)
395 KOG0545 Aryl-hydrocarbon recep 72.5 25 0.00054 31.2 7.7 69 498-566 232-302 (329)
396 PF07163 Pex26: Pex26 protein; 72.1 46 0.001 30.3 9.5 84 400-483 89-181 (309)
397 PF13762 MNE1: Mitochondrial s 71.9 52 0.0011 26.7 10.0 78 92-169 42-129 (145)
398 PF07720 TPR_3: Tetratricopept 70.5 13 0.00029 21.6 4.1 17 534-550 7-23 (36)
399 KOG2396 HAT (Half-A-TPR) repea 69.2 1.3E+02 0.0028 30.2 35.5 239 343-590 301-558 (568)
400 KOG2396 HAT (Half-A-TPR) repea 68.0 1.4E+02 0.003 30.0 35.1 79 37-117 89-168 (568)
401 PF00244 14-3-3: 14-3-3 protei 66.9 79 0.0017 28.5 10.3 162 431-593 7-200 (236)
402 PF09986 DUF2225: Uncharacteri 66.8 85 0.0018 27.8 10.2 62 462-523 120-192 (214)
403 PF11846 DUF3366: Domain of un 66.5 25 0.00055 30.4 7.1 30 493-522 141-170 (193)
404 PF12968 DUF3856: Domain of Un 66.3 60 0.0013 25.2 8.2 20 498-517 57-76 (144)
405 KOG2471 TPR repeat-containing 65.8 1.5E+02 0.0032 29.6 14.8 106 435-540 250-381 (696)
406 PF12968 DUF3856: Domain of Un 65.7 22 0.00047 27.5 5.3 62 528-589 55-127 (144)
407 KOG4279 Serine/threonine prote 65.5 68 0.0015 33.6 10.2 183 326-560 203-398 (1226)
408 KOG2300 Uncharacterized conser 65.2 1.5E+02 0.0033 29.5 34.3 181 405-585 334-550 (629)
409 KOG3824 Huntingtin interacting 64.7 11 0.00025 34.3 4.4 50 471-523 127-177 (472)
410 PF14561 TPR_20: Tetratricopep 64.7 47 0.001 24.4 7.0 28 496-523 22-49 (90)
411 KOG2063 Vacuolar assembly/sort 64.3 2.3E+02 0.0049 31.2 15.3 38 129-166 600-637 (877)
412 PF14863 Alkyl_sulf_dimr: Alky 64.0 16 0.00034 29.6 4.7 63 513-578 58-120 (141)
413 PF10516 SHNi-TPR: SHNi-TPR; 64.0 13 0.00028 22.0 3.1 28 563-590 2-29 (38)
414 KOG4642 Chaperone-dependent E3 63.6 81 0.0018 28.1 9.0 19 536-554 86-104 (284)
415 PRK12798 chemotaxis protein; R 63.3 1.6E+02 0.0034 28.9 18.2 188 400-591 87-286 (421)
416 cd08819 CARD_MDA5_2 Caspase ac 63.3 41 0.00089 24.4 6.1 64 74-139 22-85 (88)
417 PF11663 Toxin_YhaV: Toxin wit 63.2 8.3 0.00018 30.4 2.9 32 30-63 106-137 (140)
418 cd00280 TRFH Telomeric Repeat 63.1 44 0.00095 28.3 7.1 36 535-571 118-153 (200)
419 KOG0376 Serine-threonine phosp 62.9 12 0.00025 36.7 4.4 103 432-539 11-116 (476)
420 KOG1498 26S proteasome regulat 62.3 1.5E+02 0.0033 28.6 14.2 103 500-602 135-252 (439)
421 KOG0686 COP9 signalosome, subu 62.3 1.6E+02 0.0034 28.7 12.8 60 395-454 151-216 (466)
422 COG4941 Predicted RNA polymera 62.1 1.4E+02 0.0031 28.1 11.1 119 440-562 271-399 (415)
423 PF10366 Vps39_1: Vacuolar sor 61.9 70 0.0015 24.5 8.0 28 563-590 40-67 (108)
424 KOG2581 26S proteasome regulat 61.2 1.6E+02 0.0036 28.5 11.7 25 499-523 212-236 (493)
425 KOG4077 Cytochrome c oxidase, 60.9 61 0.0013 25.4 7.0 47 443-489 67-113 (149)
426 PF14689 SPOB_a: Sensor_kinase 59.8 25 0.00054 23.6 4.4 45 442-488 7-51 (62)
427 PF04910 Tcf25: Transcriptiona 59.7 1.8E+02 0.0038 28.4 15.0 89 502-590 109-221 (360)
428 cd08819 CARD_MDA5_2 Caspase ac 59.6 65 0.0014 23.4 6.7 38 406-444 48-85 (88)
429 PF08424 NRDE-2: NRDE-2, neces 59.5 1.7E+02 0.0036 28.0 14.4 114 442-558 48-184 (321)
430 KOG4814 Uncharacterized conser 59.0 27 0.00058 35.7 6.1 53 537-589 403-455 (872)
431 KOG2063 Vacuolar assembly/sort 58.0 2.9E+02 0.0064 30.4 17.8 183 326-523 506-711 (877)
432 PF09477 Type_III_YscG: Bacter 58.0 81 0.0018 24.0 9.3 78 375-455 22-99 (116)
433 KOG2471 TPR repeat-containing 56.8 2.2E+02 0.0047 28.6 12.1 64 532-598 210-273 (696)
434 KOG0991 Replication factor C, 56.1 1.5E+02 0.0032 26.4 11.7 54 415-470 229-282 (333)
435 PHA02875 ankyrin repeat protei 55.7 2.1E+02 0.0045 28.5 12.4 79 28-114 8-90 (413)
436 KOG1308 Hsp70-interacting prot 55.3 13 0.00028 34.7 3.2 85 472-558 126-212 (377)
437 PF11817 Foie-gras_1: Foie gra 54.1 46 0.001 30.2 6.7 22 466-487 184-205 (247)
438 PF11846 DUF3366: Domain of un 53.9 45 0.00097 28.9 6.4 36 524-559 140-175 (193)
439 cd00280 TRFH Telomeric Repeat 53.9 77 0.0017 26.9 7.1 19 505-523 120-138 (200)
440 PF11768 DUF3312: Protein of u 53.7 2.5E+02 0.0054 28.7 11.7 25 398-422 412-436 (545)
441 COG3947 Response regulator con 53.3 1.9E+02 0.0041 26.8 16.1 60 427-487 281-340 (361)
442 PF10255 Paf67: RNA polymerase 53.3 78 0.0017 31.0 8.2 55 501-555 127-191 (404)
443 PF11848 DUF3368: Domain of un 53.0 55 0.0012 20.5 4.9 33 131-163 13-45 (48)
444 PF11817 Foie-gras_1: Foie gra 52.6 45 0.00097 30.3 6.4 55 499-553 181-243 (247)
445 KOG2758 Translation initiation 52.1 1.3E+02 0.0029 28.0 8.8 67 524-590 124-195 (432)
446 PF04781 DUF627: Protein of un 52.0 46 0.00099 25.5 5.1 27 468-494 4-30 (111)
447 PF07575 Nucleopor_Nup85: Nup8 51.0 96 0.0021 32.5 9.2 60 154-215 404-463 (566)
448 COG2909 MalT ATP-dependent tra 50.1 3.8E+02 0.0082 29.3 32.7 24 364-387 623-646 (894)
449 PF12862 Apc5: Anaphase-promot 49.7 1E+02 0.0023 22.7 8.0 53 436-488 9-69 (94)
450 PF08311 Mad3_BUB1_I: Mad3/BUB 49.2 1.3E+02 0.0029 23.8 9.3 41 546-586 81-123 (126)
451 PF10366 Vps39_1: Vacuolar sor 48.8 1.2E+02 0.0026 23.3 7.1 40 308-352 28-67 (108)
452 KOG2581 26S proteasome regulat 48.6 1.9E+02 0.0042 28.1 9.6 66 528-593 209-278 (493)
453 KOG4077 Cytochrome c oxidase, 47.9 63 0.0014 25.4 5.3 40 178-217 72-111 (149)
454 COG5108 RPO41 Mitochondrial DN 47.3 1.8E+02 0.0038 30.4 9.6 25 160-184 33-57 (1117)
455 PHA02537 M terminase endonucle 47.2 99 0.0021 27.6 7.2 21 540-560 190-210 (230)
456 PF14689 SPOB_a: Sensor_kinase 47.0 24 0.00051 23.7 2.7 45 476-523 6-50 (62)
457 PF11848 DUF3368: Domain of un 46.7 72 0.0016 20.0 5.2 33 436-468 13-45 (48)
458 KOG0292 Vesicle coat complex C 46.7 41 0.00088 35.9 5.4 74 467-556 627-700 (1202)
459 PF08311 Mad3_BUB1_I: Mad3/BUB 46.7 1.5E+02 0.0032 23.6 8.4 43 443-485 81-124 (126)
460 PF02184 HAT: HAT (Half-A-TPR) 46.0 37 0.0008 19.2 2.8 26 543-569 2-27 (32)
461 TIGR02710 CRISPR-associated pr 46.0 2.8E+02 0.0061 27.1 10.6 55 431-485 136-196 (380)
462 COG0735 Fur Fe2+/Zn2+ uptake r 45.8 1.1E+02 0.0023 25.0 6.9 64 40-104 7-70 (145)
463 PHA02875 ankyrin repeat protei 45.3 3.2E+02 0.007 27.1 17.1 48 96-143 39-88 (413)
464 PRK10564 maltose regulon perip 45.1 47 0.001 30.7 5.1 40 326-365 259-298 (303)
465 PF04190 DUF410: Protein of un 45.1 2.5E+02 0.0054 25.8 18.5 142 333-489 19-170 (260)
466 PF08424 NRDE-2: NRDE-2, neces 44.7 2.9E+02 0.0062 26.4 15.4 120 476-597 47-189 (321)
467 PF04034 DUF367: Domain of unk 44.6 1.4E+02 0.0031 23.5 6.8 60 496-555 66-126 (127)
468 PRK10564 maltose regulon perip 44.3 45 0.00097 30.8 4.8 37 122-158 259-295 (303)
469 PF13934 ELYS: Nuclear pore co 44.0 2.4E+02 0.0052 25.2 12.1 166 410-584 26-198 (226)
470 KOG2659 LisH motif-containing 44.0 2.3E+02 0.005 25.1 9.1 94 427-523 28-130 (228)
471 COG4259 Uncharacterized protei 41.3 1.5E+02 0.0032 22.2 6.0 60 475-535 52-112 (121)
472 KOG4567 GTPase-activating prot 41.1 2.3E+02 0.005 26.5 8.5 92 243-339 263-364 (370)
473 PF15469 Sec5: Exocyst complex 40.6 1.1E+02 0.0024 26.2 6.6 119 460-602 57-179 (182)
474 PF09670 Cas_Cas02710: CRISPR- 40.4 2.3E+02 0.005 27.8 9.4 54 468-523 139-196 (379)
475 KOG1524 WD40 repeat-containing 40.0 1.5E+02 0.0033 29.7 7.8 54 461-521 574-627 (737)
476 PF09477 Type_III_YscG: Bacter 39.5 1.7E+02 0.0037 22.3 9.3 80 68-150 20-99 (116)
477 PF10345 Cohesin_load: Cohesin 39.4 5E+02 0.011 27.6 38.7 180 37-217 39-252 (608)
478 KOG0292 Vesicle coat complex C 39.3 3.3E+02 0.0071 29.7 10.4 52 461-522 673-724 (1202)
479 PF11663 Toxin_YhaV: Toxin wit 38.5 38 0.00083 26.9 3.0 33 334-368 105-137 (140)
480 PF11123 DNA_Packaging_2: DNA 38.4 77 0.0017 21.9 4.0 18 576-593 59-76 (82)
481 PF07575 Nucleopor_Nup85: Nup8 37.7 5.1E+02 0.011 27.2 17.1 14 236-249 310-323 (566)
482 PF13929 mRNA_stabil: mRNA sta 37.2 3.5E+02 0.0075 25.2 20.6 109 239-347 144-261 (292)
483 PF07064 RIC1: RIC1; InterPro 37.1 3.3E+02 0.0072 25.0 15.1 42 21-64 84-125 (258)
484 KOG4521 Nuclear pore complex, 36.5 7E+02 0.015 28.5 13.4 18 404-421 930-947 (1480)
485 PF13762 MNE1: Mitochondrial s 36.5 2.4E+02 0.0051 23.1 10.9 77 397-473 42-128 (145)
486 KOG2034 Vacuolar sorting prote 36.5 6.1E+02 0.013 27.8 24.2 130 268-412 514-646 (911)
487 cd07153 Fur_like Ferric uptake 36.4 67 0.0014 24.9 4.3 48 24-71 5-52 (116)
488 COG5159 RPN6 26S proteasome re 36.3 3.5E+02 0.0076 25.0 19.9 32 126-157 9-40 (421)
489 KOG0686 COP9 signalosome, subu 36.0 4.3E+02 0.0093 25.9 12.9 160 360-523 151-331 (466)
490 TIGR02996 rpt_mate_G_obs repea 35.6 81 0.0018 19.1 3.3 33 550-582 4-36 (42)
491 COG5191 Uncharacterized conser 35.5 1.1E+02 0.0024 28.4 5.8 69 525-593 104-173 (435)
492 PRK15490 Vi polysaccharide bio 35.4 1.7E+02 0.0036 30.4 7.7 46 540-587 54-99 (578)
493 PF09454 Vps23_core: Vps23 cor 34.9 95 0.0021 21.1 4.1 48 424-472 7-54 (65)
494 PRK13342 recombination factor 34.8 4.7E+02 0.01 26.1 15.8 170 34-218 152-333 (413)
495 KOG3636 Uncharacterized conser 34.1 3.2E+02 0.0069 26.9 8.7 84 352-436 176-271 (669)
496 PF04762 IKI3: IKI3 family; I 34.1 7.4E+02 0.016 28.1 13.8 20 299-318 700-719 (928)
497 PRK11639 zinc uptake transcrip 33.9 1.5E+02 0.0032 25.1 6.1 59 147-206 18-76 (169)
498 PF11838 ERAP1_C: ERAP1-like C 33.9 4.2E+02 0.009 25.1 17.2 55 502-556 175-229 (324)
499 TIGR02270 conserved hypothetic 33.8 4.9E+02 0.011 25.9 24.7 172 357-545 98-269 (410)
500 TIGR01503 MthylAspMut_E methyl 33.5 95 0.0021 30.7 5.4 142 33-205 68-241 (480)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.4e-92 Score=753.70 Aligned_cols=606 Identities=35% Similarity=0.621 Sum_probs=597.8
Q ss_pred CcchhhhhccCCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcC
Q 036661 5 SLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSP 84 (615)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 84 (615)
.+.++|+.|+.|+.. +||.+|.+|.+.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.+++..+.+.|
T Consensus 139 ~A~~~f~~m~~~d~~-~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g 217 (857)
T PLN03077 139 HAWYVFGKMPERDLF-SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217 (857)
T ss_pred HHHHHHhcCCCCCee-EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC
Confidence 467899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHH
Q 036661 85 FWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQA 164 (615)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 164 (615)
+.||..++|.|+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 218 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a 297 (857)
T PLN03077 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297 (857)
T ss_pred CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHH
Q 036661 165 AIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLN 244 (615)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 244 (615)
|+..|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .|+..+||.+|.+|.+.|++++|++
T Consensus 298 ~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 7999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 036661 245 FYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTR 324 (615)
Q Consensus 245 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 324 (615)
+|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|.
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 036661 325 VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 404 (615)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (615)
.+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+.+.+.+++..+.+.|+.++..++++|+++|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999986 599999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 036661 405 SKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN 484 (615)
Q Consensus 405 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 484 (615)
+++|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+
T Consensus 535 ~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 485 LMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 485 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
.|.+.+++.|+..+|+.++++|.+.|++++|.+++++|+.+|+..+|..++.+|..+|+.+.++...+++++++|+++..
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 99977899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeEEEecCeEEEEecCC
Q 036661 565 YVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615 (615)
Q Consensus 565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (615)
|..++++|...|+|++|.++.+.|.++|++++||+|||.+++.+|.|.+||
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d 744 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD 744 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999998
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-77 Score=642.48 Aligned_cols=574 Identities=30% Similarity=0.474 Sum_probs=542.7
Q ss_pred CCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHH
Q 036661 15 RSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTT 94 (615)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 94 (615)
.++.. ++|.++.++++.|++++|+.+|+.|.+.|++|+..+|..++.+|.+.+..+.+.+++..+.+.+..++...+|.
T Consensus 48 ~~~~~-~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTH-DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred ccchh-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 34455 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHH
Q 036661 95 MVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLL 174 (615)
Q Consensus 95 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 174 (615)
++..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCC
Q 036661 175 KSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGF 254 (615)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 254 (615)
.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|+ .|+..+||.+|.+|++.|++++|+++|.+|...|+
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP--RRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC--CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999 79999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHH
Q 036661 255 RPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGY 334 (615)
Q Consensus 255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~ 334 (615)
.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|..+|..+|+.++.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661 335 AQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR 414 (615)
Q Consensus 335 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 414 (615)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 036661 415 ELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP 494 (615)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 494 (615)
++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+. |+.+
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCc
Confidence 999999999999999999999999999999999999986 58999999999999999999999999999999865 8888
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc--cCCCCCCChHhHHHHH
Q 036661 495 ELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE--LEPHSAAPYVEMANIY 572 (615)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~ 572 (615)
+..+++.|+++|.+.|++++|.++|+++ .||..+|+.++.+|.++|+.++|.++|+++.+ ..|+ ..+|..+..+|
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~ 599 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCAC 599 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHH
Confidence 8888888888888888888888888887 67888888888888888888888888888776 3455 66777777888
Q ss_pred HccCChHHHHHHHHHHH-hcCcccC
Q 036661 573 ALGGRWDGVANLRTMMK-RNQVKKF 596 (615)
Q Consensus 573 ~~~g~~~~A~~~~~~~~-~~~~~~~ 596 (615)
.+.|++++|.++|+.|. +.|+.++
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCc
Confidence 88888888888888887 4566554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-74 Score=601.92 Aligned_cols=496 Identities=32% Similarity=0.535 Sum_probs=487.9
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcC-CcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHH
Q 036661 118 RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVG-IQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW 196 (615)
Q Consensus 118 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (615)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999999865 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhh
Q 036661 197 ISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ 276 (615)
Q Consensus 197 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 276 (615)
+.+|++.|+++.|.++|++|. .|+..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|...|..+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~--~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP--ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC--CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 999999999999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036661 277 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEV 356 (615)
Q Consensus 277 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 356 (615)
+.+++..+.+.|+.+|..+++.|+++|++.|++++|.++|+.|.++|..+||.++.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHH
Q 036661 357 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCA 436 (615)
Q Consensus 357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 436 (615)
||..||+.++.+|++.|+++.|.+++..|.+.|++|+..+++.|+.+|++.|++++|.++|++|.++|..+||.++.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL 516 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 516 (615)
+.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+++.|+..+|+.++++|.+.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccC
Q 036661 517 DFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKF 596 (615)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 596 (615)
+++++++..|+..+|..++.+|..+|+++.|+.+++++++++|++...|..++++|.+.|+|++|.+++++|.++|+.+.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCeEEEEecCC
Q 036661 597 PGQSLVHINGKTCTFTVED 615 (615)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~ 615 (615)
||+||+.+++.+|.|.+||
T Consensus 563 ~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred CCeeEEEECCeEEEEccCC
Confidence 9999999999999999997
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.6e-67 Score=546.43 Aligned_cols=472 Identities=25% Similarity=0.397 Sum_probs=456.6
Q ss_pred CchhcHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHH
Q 036661 17 STINQWNSQIREAVDKNEAHKALLLFRRMKKND-IEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTM 95 (615)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 95 (615)
+.. +|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.+
T Consensus 86 ~~~-~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGV-SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred Cce-eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344 89999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHH
Q 036661 96 VDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK 175 (615)
Q Consensus 96 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 175 (615)
+..|++.|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 036661 176 SVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFR 255 (615)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 255 (615)
+++..+.+.|+.||..+++.|+++|++.|++++|.++|+.|. .++..+||.+|.+|++.|++++|+++|++|.+.|+.
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999 789999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHH
Q 036661 256 PDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYA 335 (615)
Q Consensus 256 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 335 (615)
||..||+.++.+|++.|.++.|.+++..+.+.|++|+..+++.|+++|++.|++++|.++|+.|.++|..+||.+|.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661 336 QKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVMVCNALIDMYSKCGSIGDAR 414 (615)
Q Consensus 336 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~ 414 (615)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 799999999999999999999999999
Q ss_pred HHHhcCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCC
Q 036661 415 ELFYALPE-KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV 492 (615)
Q Consensus 415 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 492 (615)
++++++.. |+..+|++|+.+|...|+++.|..+++++.+. .|+ ..+|..++..|++.|++++|.++++.|.+. |+
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~ 559 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GL 559 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence 99999875 89999999999999999999999999999764 564 579999999999999999999999999966 76
Q ss_pred CC
Q 036661 493 NP 494 (615)
Q Consensus 493 ~~ 494 (615)
.+
T Consensus 560 ~k 561 (697)
T PLN03081 560 SM 561 (697)
T ss_pred cc
Confidence 53
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-64 Score=529.50 Aligned_cols=505 Identities=15% Similarity=0.162 Sum_probs=453.2
Q ss_pred CCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCC-CCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHH
Q 036661 50 IEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPF-WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIV 128 (615)
Q Consensus 50 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 128 (615)
..++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677888999999999999999999999999885 5677788889999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHH
Q 036661 129 GFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKM 208 (615)
Q Consensus 129 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (615)
+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.+++++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccC--CCCcchHHHHHHHHhcCCChhhHHHHHHHHHH--CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHH
Q 036661 209 AELVFRGIEEG--LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIY--DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHG 284 (615)
Q Consensus 209 A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (615)
|.++|+.|... .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+++.|..+|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999765 78999999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 036661 285 IHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV 360 (615)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 360 (615)
.+.|++|+..+|+.++.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999 46788899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC----CChHHHHHHHHHHH
Q 036661 361 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE----KTVVSWTTMIAGCA 436 (615)
Q Consensus 361 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~ 436 (615)
+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998864 89999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----c-------------------CchHHHHHHHHHHHHhhCCC
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH----A-------------------GFLEKGWGYFNLMTKVYQVN 493 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~ 493 (615)
+.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCC
Confidence 999999999999999999999999999998865432 1 1235688888888865 888
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661 494 PELNHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
||..+|+.++.++.+.+....+..+++.+. ..|+..+|+.++.++.+. .++|..+++++.+.
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 888888888877778888888888888775 455677888888876322 35788888888764
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-64 Score=531.28 Aligned_cols=496 Identities=14% Similarity=0.157 Sum_probs=408.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHh
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDI-EPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMY 99 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (615)
.|..++..+++.|++++|+++|+.|.+.|+ .|+..+++.++..|.+.|..++|..++..|.. |+..+|+.++.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 678888888888888888888888888775 45666677778888888888888888877764 7888888888888
Q ss_pred hcCCChhHHHHhhccCCC----CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHH
Q 036661 100 AKCDRLDCAYKLFDKMPD----RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK 175 (615)
Q Consensus 100 ~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 175 (615)
++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 888888888888888763 6778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC----CCCcchHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661 176 SVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG----LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIY 251 (615)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 251 (615)
++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|... .|+..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888887541 67788888888888888888888888888888
Q ss_pred CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCcccH
Q 036661 252 DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM----CDRTRVSW 327 (615)
Q Consensus 252 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~ 327 (615)
.|+.|+..+|+.++.+|++.|+++.|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.| ..+|..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888887 35677788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661 328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 407 (615)
Q Consensus 328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (615)
+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHhcCCC----CChHHHHHHHHHHHh-----------------------cCChHHHHHHHHHHHHcCCCCCH
Q 036661 408 GSIGDARELFYALPE----KTVVSWTTMIAGCAL-----------------------NGEFVEALDLFHQMMELDLRPNR 460 (615)
Q Consensus 408 g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~~~~~p~~ 460 (615)
|+++.|.+++++|.+ ||..+|+.++..|.+ .+..+.|..+|++|.+.|+.||.
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 888888888887765 677788887755432 12346799999999999999999
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
.||+.++.++...+....+..+++.+... +..|+..+|+.+++++.+. .++|+.++++|.
T Consensus 848 ~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 848 EVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 99999998888888999888888888644 7788899999999988432 368999999985
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-36 Score=333.42 Aligned_cols=558 Identities=10% Similarity=0.034 Sum_probs=262.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhc
Q 036661 22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAK 101 (615)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (615)
+..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...+..+.... +.+...+..+...+.+
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 375 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLA 375 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 33444455556666666666666555322 133344455555555566666666655555443 3344455555555555
Q ss_pred CCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHH
Q 036661 102 CDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH 178 (615)
Q Consensus 102 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 178 (615)
.|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++.+.+.... .......++..+...|+++.|.+++
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHH
Confidence 5666666655555432 13334445555555555555555555555443211 1222333444444555555555555
Q ss_pred HHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC
Q 036661 179 SFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD 257 (615)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 257 (615)
+.+... .+++..++..+...+...|++++|...|+++.+..| +...+..+...+...|++++|.+.++++...+ +.+
T Consensus 455 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 532 (899)
T TIGR02917 455 KKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKN 532 (899)
T ss_pred HHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCc
Confidence 555442 223344455555555555555555555555443322 23334444445555555555555555554432 123
Q ss_pred HHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHH
Q 036661 258 VTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISGY 334 (615)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~ 334 (615)
..++..+...+...|+.+.|...+..+.+.+ +.+...+..++..|...|++++|..+++.+. +.+...|..+...+
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3444444444444555555555555544433 2233344444455555555555555554441 22333444455555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661 335 AQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR 414 (615)
Q Consensus 335 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 414 (615)
...|++++|...|+++.+.. +.+...+..+...+...|+++.|..+++.+.+.. +.+...+..++..+...|++++|.
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555544432 2233344444444444555555555555444432 333444444444455555555555
Q ss_pred HHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC
Q 036661 415 ELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ 491 (615)
Q Consensus 415 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 491 (615)
++++.+.. .+...+..+...+...|++++|...++++... .|+..++..+..++.+.|++++|.+.++.+.+ .
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~ 765 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--T 765 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 55444433 23334444444444455555555555544443 23333344444444444455555444444443 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661 492 VNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA 569 (615)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 569 (615)
.+.+...+..++..|...|++++|.+.|+++. .+++...+..++..+...|+ .+|+..++++++..|+++..+..++
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 22333444444444444455555544444443 22233344444444444444 4444444444444444444444444
Q ss_pred HHHHccCChHHHHHHHHHHHhcC
Q 036661 570 NIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 570 ~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
.+|...|++++|.++++++.+.+
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Confidence 44444444444444444444433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-35 Score=328.37 Aligned_cols=558 Identities=9% Similarity=0.001 Sum_probs=468.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhh
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYA 100 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (615)
.+..+...+.+.|++++|...++.+.+.++ .+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+.
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKL 408 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 677888899999999999999999987643 366778888888999999999999999988765 445667788888889
Q ss_pred cCCChhHHHHhhccCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHH
Q 036661 101 KCDRLDCAYKLFDKMPDR---DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSV 177 (615)
Q Consensus 101 ~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 177 (615)
..|++++|.+.|+.+.+. +...+..++..+.+.|++++|.++++.+... .+++..++..+...+...|+++.|.+.
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999887642 3456667788899999999999999998875 345677888888999999999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCC-CCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 036661 178 HSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGL-RTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRP 256 (615)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 256 (615)
++.+.+.. +.+...+..+...+...|++++|.+.|+.+.... .+..++..+...+.+.|+.++|...++++...+ +.
T Consensus 488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 99988754 3355677888889999999999999999887653 467788888899999999999999999988764 34
Q ss_pred CHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHH
Q 036661 257 DVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISG 333 (615)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~ 333 (615)
+...+..+...+...|+.+.|..+++.+.+.. +.+...+..+...+...|++++|...|+.+. +.+...+..+...
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 56677788888999999999999999987654 5677888999999999999999999998873 3356678888899
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 036661 334 YAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDA 413 (615)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 413 (615)
+.+.|++++|...++++.... +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999988753 4567788888899999999999999999998876 56777788888999999999999
Q ss_pred HHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC
Q 036661 414 RELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ 491 (615)
Q Consensus 414 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 491 (615)
.+.|+.+.. |+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++.+.
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 799 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-- 799 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--
Confidence 999998765 555777788899999999999999999998863 556678888888999999999999999999853
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661 492 VNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA 569 (615)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 569 (615)
.+++...+..++..+...|+ .+|+++++++. ..| +...+..++..+...|++++|...++++++.+|.++.++..++
T Consensus 800 ~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 878 (899)
T TIGR02917 800 APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLA 878 (899)
T ss_pred CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 35567788889999999999 88999999876 333 4557778888889999999999999999999999999999999
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 036661 570 NIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 570 ~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.+|.+.|++++|.+++++|++
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999998863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.7e-27 Score=262.59 Aligned_cols=568 Identities=11% Similarity=0.021 Sum_probs=406.5
Q ss_pred CcchhhhhccCCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH-----------------HHHHHHHHhc
Q 036661 5 SLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTF-----------------PFIAKACAKL 67 (615)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~ 67 (615)
++.+++..-|. ++. .+..++..+.+.|+.++|.+.++++.+.. |+...+ ..+...+...
T Consensus 50 ~l~kl~~~~p~-~p~-~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~ 125 (1157)
T PRK11447 50 SLYRLELIDPN-NPD-VIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATT 125 (1157)
T ss_pred HHHHHHccCCC-CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC
Confidence 34444433333 344 78889999999999999999999999865 333222 2334467788
Q ss_pred CCchhHhHHHHHHhhcCCCCChHH-HHHHHHHhhcCCChhHHHHhhccCCC--C-CchhHHHHHHHHHhcCChHHHHHHH
Q 036661 68 SDFLYSQMIHGHIVKSPFWSDIFV-QTTMVDMYAKCDRLDCAYKLFDKMPD--R-DVASWNAMIVGFAQMGFLEKVLCLF 143 (615)
Q Consensus 68 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~ 143 (615)
|++++|.+.++.+.+.+ +++... ...........|+.++|.+.|+.+.+ | +...+..+...+...|+.++|++.+
T Consensus 126 g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 126 GRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999998765 344322 11112222345899999999999875 3 5567888889999999999999999
Q ss_pred HHhHHcCC------------------c--------------CChhHH----H-----------------HHHHHHHhcCC
Q 036661 144 YNMRLVGI------------------Q--------------ADFVTV----M-----------------GLTQAAIHAKH 170 (615)
Q Consensus 144 ~~m~~~~~------------------~--------------p~~~~~----~-----------------~ll~~~~~~~~ 170 (615)
+++.+... . |+...+ . ..-..+...|+
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 98754321 0 110000 0 11223445677
Q ss_pred hhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcc---hHHH------------HHHHHhc
Q 036661 171 LSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVV---SWNS------------IIGGCTY 235 (615)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~------------li~~~~~ 235 (615)
+++|...++..++.. +.+..++..+..+|.+.|++++|+..|++..+..|+.. .|.. ....+.+
T Consensus 285 ~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 285 GGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 788888887777653 22566777777888888888888888877665544321 1211 1234567
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036661 236 GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFL 315 (615)
Q Consensus 236 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 315 (615)
.|++++|+..|++..+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|. .++.++|..+
T Consensus 364 ~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~ 440 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAF 440 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHH
Confidence 7888888888888777532 344555666677777888888888888877654 334455555666654 4567777777
Q ss_pred HhccCCCC------------cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHH
Q 036661 316 FDGMCDRT------------RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDN 383 (615)
Q Consensus 316 ~~~~~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 383 (615)
++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|...++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77653321 1234455667788999999999999988763 3355667778888999999999999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC----Ch---------HHHHHHHHHHHhcCChHHHHHHHHH
Q 036661 384 YACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK----TV---------VSWTTMIAGCALNGEFVEALDLFHQ 450 (615)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~a~~~~~~ 450 (615)
.+.+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|++++|..+++.
T Consensus 520 ~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 520 RLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 988754 345555555666677889999999999987642 11 1123456678889999999998872
Q ss_pred HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-h
Q 036661 451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-A 528 (615)
Q Consensus 451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~ 528 (615)
.+++...+..+...+.+.|++++|+..|+++.+. -+.+...+..++.+|...|++++|.+.++... ..|+ .
T Consensus 599 -----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 599 -----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL 671 (1157)
T ss_pred -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh
Confidence 2455567788889999999999999999999953 23456788899999999999999999999887 4444 4
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC------ChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA------PYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
..+..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|++.|++...
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677888888999999999999999998876554 566679999999999999999999964
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.1e-26 Score=255.99 Aligned_cols=562 Identities=9% Similarity=-0.031 Sum_probs=398.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHH---------
Q 036661 22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQ--------- 92 (615)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------- 92 (615)
.-..++.+...++.+.|.+.++++....+. ++..+..++..+.+.|+.++|.+.++.+.+.. +.+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence 555677889999999999999999986544 67788888999999999999999999999876 3333222
Q ss_pred -------HHHHHHhhcCCChhHHHHhhccCCCCCchhHH----HHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH
Q 036661 93 -------TTMVDMYAKCDRLDCAYKLFDKMPDRDVASWN----AMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL 161 (615)
Q Consensus 93 -------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 161 (615)
..+...+.+.|++++|...|+...+.+..... .........|+.++|++.++++.+.. +-+...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 23344678899999999999998753222211 11222234599999999999999863 2245567778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcC----------------C----------------Cccch-----------------
Q 036661 162 TQAAIHAKHLSLLKSVHSFGIHIGV----------------D----------------ADVSV----------------- 192 (615)
Q Consensus 162 l~~~~~~~~~~~a~~~~~~~~~~~~----------------~----------------~~~~~----------------- 192 (615)
...+...|+.++|.+.++.+.+... . |+...
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 8888899999999999888754210 0 11000
Q ss_pred ----HHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCH-HhH-----
Q 036661 193 ----CNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDV-TTV----- 261 (615)
Q Consensus 193 ----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~----- 261 (615)
.......+...|++++|+..|++..+..| +...+..+...+.+.|++++|+..|++..+....... ..+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 00113345567788888888877766544 5666777777788888888888888877765422111 111
Q ss_pred -------HHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcccHHHHH
Q 036661 262 -------VSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD---RTRVSWTAMI 331 (615)
Q Consensus 262 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll 331 (615)
......+.+.|++++|...++++.+.. +.+...+..+...+...|++++|++.|+++.. .+...+..+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 111234556777888888888777764 34555666777778888888888888877632 2334455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC--------CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661 332 SGYAQKGDLDEALRLFFAMEAAGEV--------PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM 403 (615)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (615)
..|. .++.++|+..++.+...... .....+..+...+...|++++|...+++..+.. +.+..++..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5553 35667777777654332100 011223445556677888888888888888765 4466677788888
Q ss_pred HHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHhh
Q 036661 404 YSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV---------TFLAVLQACT 471 (615)
Q Consensus 404 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---------~~~~l~~~~~ 471 (615)
|.+.|++++|...++++.. .++..+..+...+...+++++|+..++.+......++.. .+..+...+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 8888899888888887644 344555555556677888888888887765432222211 1234456778
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHH
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEY 549 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~ 549 (615)
..|+.++|..+++. .+++...+..++..+.+.|++++|++.|+++. ..| +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88999999888772 24455677789999999999999999999987 444 56788889999999999999999
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661 550 VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKK 595 (615)
Q Consensus 550 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 595 (615)
.++++++..|+++..+..++.++...|++++|.++++++.......
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 9999999999999999999999999999999999999998765433
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=4.7e-24 Score=224.27 Aligned_cols=539 Identities=10% Similarity=-0.023 Sum_probs=359.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHh
Q 036661 32 KNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKL 111 (615)
Q Consensus 32 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 111 (615)
.|++++|+..|+...+..+. +...+..+...|...|+.++|...+++..+.. +.|...+..+ ..+ +++++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHH
Confidence 37888888888888776544 46677777777888888888888888887765 2333333333 222 777777788
Q ss_pred hccCCC--C-CchhHHHHHHH--------HHhcCChHHHHHHHHHhHHcCCcCChhHHHHH-HHHHHhcCChhHHHHHHH
Q 036661 112 FDKMPD--R-DVASWNAMIVG--------FAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL-TQAAIHAKHLSLLKSVHS 179 (615)
Q Consensus 112 ~~~~~~--~-~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~ 179 (615)
++++.+ | +...+..+... |.+. ++|.+.++ .......|+..+.... .+.+...++++.+..++.
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 877764 3 33444444443 4444 44444444 3333334445444444 777777888888888888
Q ss_pred HHHHhcCCCccchHHHHHHHHHc-cCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCC-CC
Q 036661 180 FGIHIGVDADVSVCNTWISAYAK-CNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFR-PD 257 (615)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~ 257 (615)
.+.+.+. .+......|..+|.. .++ +.+..+++... ..+...+..+...+.+.|+.++|.++++++...-.. |+
T Consensus 207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~l--k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGI--FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 8877653 234445666666666 355 66666655322 356667777777788888888888777776543222 33
Q ss_pred HHhHHHHH------------------------------HhccCchhhhhhhHH---------------------------
Q 036661 258 VTTVVSLL------------------------------SSCVCPEALVQGRLV--------------------------- 280 (615)
Q Consensus 258 ~~~~~~ll------------------------------~~~~~~~~~~~a~~~--------------------------- 280 (615)
..++..++ ..+.+.+.++.+.++
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 33332222 122222333322222
Q ss_pred --HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCc----ccHHHHHHHHHhcCC---hhHHHHH---
Q 036661 281 --HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD--RTR----VSWTAMISGYAQKGD---LDEALRL--- 346 (615)
Q Consensus 281 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~ll~~~~~~~~---~~~a~~~--- 346 (615)
+..+.+. .+-+......+.....+.|+.++|..+|+...+ ++. ....-++..|.+.+. ..++..+
T Consensus 363 ~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 363 RLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 1111111 122444444455556677889999999988743 222 233466777777665 3333333
Q ss_pred -------------------HHHHHHC-CC-CC--CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661 347 -------------------FFAMEAA-GE-VP--DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM 403 (615)
Q Consensus 347 -------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (615)
+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 1111111 11 23 45566666666655 78888988777776554 444444445556
Q ss_pred HHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHH
Q 036661 404 YSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGW 480 (615)
Q Consensus 404 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 480 (615)
+...|++++|...++++.. ++...+..+..++.+.|++++|...+++..+.+ |+. ..+..+.......|++++|.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 6789999999999987655 445567777888899999999999999999864 443 34444455556779999999
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661 481 GYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
..+++.. ...|+...+..++.++.+.|++++|...+++.. ..| +...+..+..++...|++++|+..++++++++
T Consensus 597 ~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998 446778889999999999999999999999987 555 45577888889999999999999999999999
Q ss_pred CCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 559 PHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 559 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
|+++..+..++.+|...|++++|+..+++..+..+
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999987654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=6.9e-23 Score=215.58 Aligned_cols=550 Identities=10% Similarity=-0.003 Sum_probs=396.2
Q ss_pred hhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHH
Q 036661 19 INQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDM 98 (615)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (615)
..++..+.+.|...|++++|...+++..+.+ |+-..|..++..+ +++.+|..+++++.+.. +-+..++..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~ 151 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRS 151 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHH
Confidence 3388999999999999999999999999854 4444444444333 89999999999999986 4445555555555
Q ss_pred --------hhcCCChhHHHHhhccCCCC--CchhHHH-HHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHh
Q 036661 99 --------YAKCDRLDCAYKLFDKMPDR--DVASWNA-MIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIH 167 (615)
Q Consensus 99 --------~~~~g~~~~a~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 167 (615)
|.+.+...++++ .....| +...... +...|.+.|++++|+++++++.+.+.. +..-...+-.++..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q 228 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLA 228 (987)
T ss_pred hhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 777766666666 333333 3443444 489999999999999999999997632 33335555556666
Q ss_pred -cCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC---CCCcchHHH---------------
Q 036661 168 -AKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG---LRTVVSWNS--------------- 228 (615)
Q Consensus 168 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~--------------- 228 (615)
.++ +.+..+++. .++.+...+..+.+.|.+.|+.++|.+++++++.. .|...+|--
T Consensus 229 ~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 229 GQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred hhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 356 666666442 33457888999999999999999999999987754 222222211
Q ss_pred ---------------HHHHHhcCCChhhHHHHHH-----------------------------HHHHCCCCCCHHhHHHH
Q 036661 229 ---------------IIGGCTYGDKFDDSLNFYR-----------------------------HMIYDGFRPDVTTVVSL 264 (615)
Q Consensus 229 ---------------li~~~~~~~~~~~a~~~~~-----------------------------~m~~~~~~p~~~~~~~l 264 (615)
.+..+.+.+.++.+.++.. .|.+. .+-+......+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~ 382 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQL 382 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHH
Confidence 1333445555554444421 11110 00122222222
Q ss_pred HHhccCchhhhhhhHHHHHHHHh-c-CCCChhHHHHHHHHHHhcCC---HHHHHHH------------------------
Q 036661 265 LSSCVCPEALVQGRLVHSHGIHY-G-FDLDVSVINTLISMYSKCGD---IDSARFL------------------------ 315 (615)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~------------------------ 315 (615)
.-.....|+.++|.+++...... + -.++.....-++..|.+.+. ...+..+
T Consensus 383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 22344667888888888887762 1 23344556678888887766 3333222
Q ss_pred -HhccC---CC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 036661 316 -FDGMC---DR--TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGG 389 (615)
Q Consensus 316 -~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 389 (615)
+.... ++ +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|+++.|...++.+...
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 11111 12 44566777777766 7888999988887765 466655445555567899999999999987654
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036661 390 LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV---SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAV 466 (615)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 466 (615)
+|+...+..+..++.+.|++++|...+++....++. .+..+.......|++++|+..+++..+. .|+...+..+
T Consensus 539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L 615 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVAR 615 (987)
T ss_pred -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 344445667788889999999999999887764332 3333334445569999999999999986 6788889999
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCC
Q 036661 467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRN 543 (615)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~ 543 (615)
..++.+.|++++|+..+++... ..|+ ...+..++.++...|++++|++.+++.. ..| +...+..+..++...|+
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999985 3454 5678889999999999999999999987 445 56688999999999999
Q ss_pred hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 544 IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 544 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+++|+..++++++++|++..+....+++..+..+++.|.+.+++.-.-++
T Consensus 693 ~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999987765544
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=6.7e-23 Score=191.37 Aligned_cols=451 Identities=12% Similarity=0.090 Sum_probs=343.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccC
Q 036661 125 AMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCN 204 (615)
Q Consensus 125 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (615)
.|..-..+.|++++|++.-...-+.. ..+..+.-.+-..+.+..+.+...+--...++. .+--..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 44445556677777766544433322 111112222222333444444333322222221 1223557777888888888
Q ss_pred CHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHH-HhccCchhhhhhhHHHH
Q 036661 205 DLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLL-SSCVCPEALVQGRLVHS 282 (615)
Q Consensus 205 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~ 282 (615)
++++|...++.+.+..| .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+-+ ...-..|++++|..-+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 88888888887776644 5777888888888888888888888887763 36554443322 23334677888887777
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 036661 283 HGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTR---VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPD- 358 (615)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 358 (615)
+.++.. +.=..+++.|...+-..|+...|+..|++..+-|+ ..|-.|...|...+.++.|...|.+.... +|+
T Consensus 209 kAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 209 KAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 777653 22345678888889999999999999998854433 47888999999999999999999888764 454
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHH
Q 036661 359 LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGC 435 (615)
Q Consensus 359 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 435 (615)
...+..+...|...|..+.|...+++..+.. +.-+..|+.|..++-..|++.+|.+.+.+... ....+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4677788888999999999999999998865 45567899999999999999999999998776 3456888999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChH
Q 036661 436 ALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLK 513 (615)
Q Consensus 436 ~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 513 (615)
...|.+++|..+|....+. .|.- ..++.|...|-++|++++|+..+++.. .+.|+ ...++.++..|-..|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999884 6665 578999999999999999999999998 67888 468999999999999999
Q ss_pred HHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 514 EALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 514 ~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
.|.+.+.++. ..|. ......|...|...|+..+|++.|+.++++.|+.|.+|.+++.++.-..+|.+=.+.++++
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 9999999987 6665 4578899999999999999999999999999999999999999988888777654444444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.8e-22 Score=186.39 Aligned_cols=420 Identities=13% Similarity=0.127 Sum_probs=340.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhc-ccCCCCcchHHHHHHHHhcCCCh
Q 036661 161 LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGI-EEGLRTVVSWNSIIGGCTYGDKF 239 (615)
Q Consensus 161 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~ 239 (615)
+..-..+.|++.+|++.-...-... +.+......+-..+....+.+.....-... .....-..+|..+...+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344556788888887665544332 223333444445566666666554333322 22244678899999999999999
Q ss_pred hhHHHHHHHHHHCCCCC-CHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChh-HHHHHHHHHHhcCCHHHHHHHHh
Q 036661 240 DDSLNFYRHMIYDGFRP-DVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVS-VINTLISMYSKCGDIDSARFLFD 317 (615)
Q Consensus 240 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 317 (615)
++|+.+++.+++.. | ....|..+..++...|+.+.|.+.+.+.++.. |+.. ..+.+....-..|++++|...+.
T Consensus 133 ~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999853 5 45678889999999999999999999988763 4433 33445566667899999999887
Q ss_pred ccCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCc
Q 036661 318 GMCD--R-TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN 393 (615)
Q Consensus 318 ~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 393 (615)
+... | =.+.|+.|...+-.+|+...|+..|++.... .|+ ...|..|...|...+.++.|...+....... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7633 3 3458999999999999999999999999875 344 3577788888888889999988888877654 556
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 036661 394 VMVCNALIDMYSKCGSIGDARELFYALPE--KT-VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQA 469 (615)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~ 469 (615)
...+..+...|-.+|.++.|++.+++..+ |+ +..|+.|..++...|+..+|...+.+.... .|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 77788888889999999999999998876 43 479999999999999999999999999986 5554 688999999
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhH
Q 036661 470 CTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~ 546 (615)
+...|.+++|..+|.... .+.|. ...++.|+..|-.+|++++|+..+++.. +.|. ...+..++..|...|+...
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999988 44565 4578889999999999999999999987 7776 4588999999999999999
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 547 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
|.+.+.+++.++|.-++++.+|+.+|...|+..+|++.|+..++-.+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999987654
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.3e-20 Score=181.94 Aligned_cols=565 Identities=12% Similarity=0.029 Sum_probs=407.8
Q ss_pred cHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHH
Q 036661 21 QWNSQIREAVD--KNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDM 98 (615)
Q Consensus 21 ~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (615)
..-.+.++++. .+++..|+.+|..+....+.--+.....+-.++.+.++.+.|+..|.+....+ +.++.++-.|.-.
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~ 242 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEV 242 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHH
Confidence 35566676665 66899999999998775443333344455577789999999999999998765 2223333222222
Q ss_pred hhcC---CChhHHHHhhccCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCc--CChhHHHHHHHHHHhcCC
Q 036661 99 YAKC---DRLDCAYKLFDKMP---DRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQ--ADFVTVMGLTQAAIHAKH 170 (615)
Q Consensus 99 ~~~~---g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~ 170 (615)
-... ..+..+..++...- ..|+...+.|..-|.-.|++..++.+.+.+...... .-...|..+.+++-..|+
T Consensus 243 ~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 243 DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 1222 23445555555543 258889999999999999999999999998875411 123458889999999999
Q ss_pred hhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCC-cchHHHHHHHHhcCC----ChhhHHHH
Q 036661 171 LSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRT-VVSWNSIIGGCTYGD----KFDDSLNF 245 (615)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~----~~~~a~~~ 245 (615)
+++|...|-+..+.....-...+.-+...|.+.|+++.+...|+.+....|+ ..+...+...|...+ ..+.|..+
T Consensus 323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 9999999988877542222344567889999999999999999999887664 455555556666554 45677777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHH----HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036661 246 YRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHS----HGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321 (615)
Q Consensus 246 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (615)
+.+..+.- +.|...|..+...+....-+.. ..++. .+...+-.+.+...|.+...+...|+++.|...|+....
T Consensus 403 l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 403 LGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 77766543 3556677777666655443333 44444 444566678899999999999999999999999987621
Q ss_pred -------CCcc------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhcccchhhHHHHHHHHHHh
Q 036661 322 -------RTRV------SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV-TVLSMISGCGQSGALELGKWFDNYACS 387 (615)
Q Consensus 322 -------~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 387 (615)
++.. +--.+...+-..++++.|.+.|..+... .|.-+ .|..+.......++...|...+.....
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 1221 2223555566678999999999999886 34443 344444333445678888888888877
Q ss_pred cCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChHHHHHHHHHHHh------------cCChHHHHHHHHH
Q 036661 388 GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KTVVSWTTMIAGCAL------------NGEFVEALDLFHQ 450 (615)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~ 450 (615)
.+ ..++..+..+...+.+...+..|.+-|+.+.. +|+.+.-.|...|.+ .+..++|+++|.+
T Consensus 559 ~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 559 ID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred cc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 54 55566666677788888888888775544332 355555555554443 3456889999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC
Q 036661 451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP----IKS 526 (615)
Q Consensus 451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p 526 (615)
++... +-|...-+.+.-+++..|++.+|..+|....+.. .....+|-.++.+|..+|++..|+++|+... ...
T Consensus 638 vL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 638 VLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred HHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 98863 4466777888889999999999999999999753 2345678889999999999999999998875 445
Q ss_pred ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc-------------------CChHHHHHHHHH
Q 036661 527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG-------------------GRWDGVANLRTM 587 (615)
Q Consensus 527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~ 587 (615)
+......|..++.+.|.+.+|.+.+.+++...|.++.+.++++-+..+. +..+.|.++|..
T Consensus 715 ~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ 794 (1018)
T KOG2002|consen 715 RSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTE 794 (1018)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999888887765543 346778888888
Q ss_pred HHhcCcc
Q 036661 588 MKRNQVK 594 (615)
Q Consensus 588 ~~~~~~~ 594 (615)
|.+.+.+
T Consensus 795 ls~~~d~ 801 (1018)
T KOG2002|consen 795 LSKNGDK 801 (1018)
T ss_pred HHhcCCC
Confidence 8776654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.3e-20 Score=195.59 Aligned_cols=422 Identities=10% Similarity=-0.012 Sum_probs=269.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHc
Q 036661 123 WNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAK 202 (615)
Q Consensus 123 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (615)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|+++.|.+.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556667777777777777777765 45666666666666666677776666666666543 1234455666666666
Q ss_pred cCCHHHHHHHHHhcccCCCC-cchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHH
Q 036661 203 CNDLKMAELVFRGIEEGLRT-VVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVH 281 (615)
Q Consensus 203 ~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 281 (615)
.|++++|...|..+....+. ......++..+.. ..+...........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~---------------------------- 254 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK---------------------------- 254 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC----------------------------
Confidence 66666666655443321111 1101111111100 11111111111110
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCC---cccHHHHHHH---HHhcCChhHHHHHHHHHHHCC-
Q 036661 282 SHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRT---RVSWTAMISG---YAQKGDLDEALRLFFAMEAAG- 354 (615)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~- 354 (615)
+.+......+.. |...........-+....+.+ ...+..+... ....+++++|++.|++..+.+
T Consensus 255 --------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 255 --------PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred --------CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 111111111111 111111111111111111111 1111111111 123467888999998888764
Q ss_pred CCC-CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHH
Q 036661 355 EVP-DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTT 430 (615)
Q Consensus 355 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 430 (615)
..| ....+..+...+...|+++.|...++...+.. +.....+..+...+...|++++|...|+++.+ .+...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 223 34456666777778899999999998887764 34466777888888899999999999987655 45678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 036661 431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG 510 (615)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 510 (615)
+...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..+++..+. .+.+...+..++.++...|
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcc
Confidence 9999999999999999999999863 334567778888999999999999999998853 3444678888999999999
Q ss_pred ChHHHHHHHHhCC-CCCCh-hh-------HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHH
Q 036661 511 KLKEALDFVQSMP-IKSDA-GI-------WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGV 581 (615)
Q Consensus 511 ~~~~A~~~~~~~~-~~p~~-~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 581 (615)
++++|.+.|++.. ..|+. .. +......+...|++++|.+.++++++++|++...+..++.+|.+.|++++|
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999876 33331 11 111222334469999999999999999999988999999999999999999
Q ss_pred HHHHHHHHhcC
Q 036661 582 ANLRTMMKRNQ 592 (615)
Q Consensus 582 ~~~~~~~~~~~ 592 (615)
++.+++..+..
T Consensus 562 i~~~e~A~~l~ 572 (615)
T TIGR00990 562 LKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.7e-19 Score=172.50 Aligned_cols=555 Identities=10% Similarity=0.016 Sum_probs=399.6
Q ss_pred HHHhcCC--hhHHHHHHHHHHhCCCCCCcccHHHHHHHH--HhcCCchhHhHHHHHHhhcCC--CCChHHHHHHHHHhhc
Q 036661 28 EAVDKNE--AHKALLLFRRMKKNDIEPNNLTFPFIAKAC--AKLSDFLYSQMIHGHIVKSPF--WSDIFVQTTMVDMYAK 101 (615)
Q Consensus 28 ~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 101 (615)
.|...+. .+.|...|....+..+ +| ....+.+++ ...+++..|..+|..++.... .||+. -.+...+.+
T Consensus 137 ~~l~~~~~~~~~A~a~F~~Vl~~sp-~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~k 211 (1018)
T KOG2002|consen 137 FLLLEGDKSMDDADAQFHFVLKQSP-DN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWK 211 (1018)
T ss_pred hhhhcCCccHHHHHHHHHHHHhhCC-cc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHh
Confidence 3444444 4899999999987532 23 344455554 456899999999999776543 34443 334566778
Q ss_pred CCChhHHHHhhccCCCCCchhHHHHHHH---HHhc---CChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHH
Q 036661 102 CDRLDCAYKLFDKMPDRDVASWNAMIVG---FAQM---GFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK 175 (615)
Q Consensus 102 ~g~~~~a~~~~~~~~~~~~~~~~~li~~---~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 175 (615)
.|+.+.|+..|....+-|+..-++++.. -... ..+..++.++...-... .-++...+.|.+.+.-.|++..+.
T Consensus 212 l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHH
Confidence 9999999999999887655444443332 2222 23556666666554432 346677888888999999999999
Q ss_pred HHHHHHHHhcCC--CccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCc--chHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661 176 SVHSFGIHIGVD--ADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTV--VSWNSIIGGCTYGDKFDDSLNFYRHMIY 251 (615)
Q Consensus 176 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 251 (615)
.+...+...... .-...|-.+.++|...|++++|..+|.+.....++. ..+--+...+...|+++.+...|+....
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 999988875422 123457888999999999999999998877665554 4445577889999999999999999987
Q ss_pred CCCCCCHHhHHHHHHhccCch----hhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc--------
Q 036661 252 DGFRPDVTTVVSLLSSCVCPE----ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM-------- 319 (615)
Q Consensus 252 ~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------- 319 (615)
.. +-+..|...+...|...+ ..+.|..++....+.. +.|...|-.+...+...+-+.. +..|...
T Consensus 371 ~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 371 QL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG 447 (1018)
T ss_pred hC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC
Confidence 53 233455555555555543 4566666666666554 5677778777777766544322 4444332
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHhhcccchhhHHHHHHHHHHhcCC
Q 036661 320 CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA---GEVPDL------VTVLSMISGCGQSGALELGKWFDNYACSGGL 390 (615)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 390 (615)
....+...|.+...+...|++.+|...|.+.... ...++. .+-..+....-..++.+.|.+.|..+.+..
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh- 526 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH- 526 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-
Confidence 3346678899999999999999999999987654 122222 233345556667789999999999998754
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHH
Q 036661 391 KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNRVTFLAV 466 (615)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l 466 (615)
+.-+..|-.++......+...+|...++.+.. .++..|..+...+.....+..|.+-|....+.- ..+|..+...|
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 33333444444344455778889999987765 677888888889998888888888777665532 24677777777
Q ss_pred HHHhhc------------cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 036661 467 LQACTH------------AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWG 532 (615)
Q Consensus 467 ~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~ 532 (615)
...|.. .+..++|+++|.++.+ ..+.+...-+.++-+++..|++.+|..+|.++. ......+|.
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~l 684 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL 684 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceee
Confidence 775543 2456788888888875 345566777789999999999999999999987 333556899
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhccC--CCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 533 TLLCACKIHRNIEIGEYVAYRLFELE--PHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 533 ~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
.++.+|...|++-.|+++|+..++.. .+++.++..|+.++.+.|+|.+|.+.+.+.....+.
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999998743 456889999999999999999999999888876653
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=7.1e-19 Score=181.69 Aligned_cols=371 Identities=11% Similarity=-0.034 Sum_probs=279.1
Q ss_pred HccCCHHHHHHHHHhcccCCC----CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhh
Q 036661 201 AKCNDLKMAELVFRGIEEGLR----TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ 276 (615)
Q Consensus 201 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 276 (615)
.+..+++...-+|...++..+ +......++..+.+.|++++|+.+++..+.....+ ...+..++.+....|+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 445566666666665554422 33345566777888889999999888888765433 3334444455667888888
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036661 277 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA 353 (615)
Q Consensus 277 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 353 (615)
|...++.+.... +.+...+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 888888888765 4566778888899999999999999998873 335567888899999999999999999988765
Q ss_pred CCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHH
Q 036661 354 GEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTT 430 (615)
Q Consensus 354 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 430 (615)
.. .+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...+++... .+...+..
T Consensus 174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 32 222333233 34678899999999999887765344445555667788899999999999988765 35678888
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHH
Q 036661 431 MIAGCALNGEFVE----ALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMAD 504 (615)
Q Consensus 431 l~~~~~~~~~~~~----a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 504 (615)
+...+...|++++ |...++++.+. .|+ ...+..+...+...|++++|...++++... .|+ ...+..++.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 9999999999986 79999999986 454 568888999999999999999999998853 344 456777889
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCChhh-HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHH
Q 036661 505 LLGRKGKLKEALDFVQSMP-IKSDAGI-WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVA 582 (615)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 582 (615)
++.+.|++++|...++++. ..|+... +..+..++...|+.++|...++++++.+|++. ...+++|.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~ 394 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGL 394 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHH
Confidence 9999999999999999887 5666543 34456778889999999999999999999864 34455666
Q ss_pred HHHHHHHhcC
Q 036661 583 NLRTMMKRNQ 592 (615)
Q Consensus 583 ~~~~~~~~~~ 592 (615)
..+.+..+.-
T Consensus 395 ~~~~~~~~~~ 404 (656)
T PRK15174 395 LALDGQISAV 404 (656)
T ss_pred HHHHHHHHhc
Confidence 6666665543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.9e-20 Score=182.61 Aligned_cols=292 Identities=14% Similarity=0.111 Sum_probs=218.0
Q ss_pred HHHhcCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHhhcccchh
Q 036661 302 MYSKCGDIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPD---LVTVLSMISGCGQSGAL 375 (615)
Q Consensus 302 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~ 375 (615)
.+...|++++|...|.++... +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445566777777777766322 334566667777777777777777777766432221 23456666777777777
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCC--------hHHHHHHHHHHHhcCChHHHHHH
Q 036661 376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKT--------VVSWTTMIAGCALNGEFVEALDL 447 (615)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~ 447 (615)
+.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+...+ ...+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776643 4456677777778888888888888777765421 12355677788889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 036661 448 FHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE--LNHYSCMADLLGRKGKLKEALDFVQSMP-I 524 (615)
Q Consensus 448 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 524 (615)
++++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ...+..++.+|...|++++|.+.++++. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998863 334567788888999999999999999999853 343 3567888999999999999999999986 6
Q ss_pred CCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc---cCChHHHHHHHHHHHhcCcccCCce
Q 036661 525 KSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL---GGRWDGVANLRTMMKRNQVKKFPGQ 599 (615)
Q Consensus 525 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 599 (615)
.|+...+..++..+.+.|++++|..+++++++..|+++. +..+...+.. .|+.++|...++++.++++.++|.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 677777788889999999999999999999999999764 4444444432 5699999999999999999988863
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=9.8e-19 Score=184.75 Aligned_cols=399 Identities=9% Similarity=-0.046 Sum_probs=239.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHH
Q 036661 155 FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGC 233 (615)
Q Consensus 155 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 233 (615)
..-..-.+......|+.++|.+++....... +.+...+..+..++...|++++|..+|++.....| +...+..+...+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3334444555556666666666666665421 22333466666666666666666666666554433 344455555666
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 036661 234 TYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR 313 (615)
Q Consensus 234 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 313 (615)
...|++++|+..+++..+.. |+...+..+..++...|+.+.|...++.+.+.. +.+..
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~--P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~------------------- 151 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA--PDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQ------------------- 151 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-------------------
Confidence 66666666666666665542 221113333444444444444444444444432 22223
Q ss_pred HHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHhh-----cccchh---hHHH
Q 036661 314 FLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL------VTVLSMISGC-----GQSGAL---ELGK 379 (615)
Q Consensus 314 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~-----~~~~~~---~~a~ 379 (615)
.+..+...+...+..++|++.++.... .|+. ......+... ...+++ +.|.
T Consensus 152 ------------~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 152 ------------YPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred ------------HHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 333344444444555555544443332 1111 0001111111 122233 5666
Q ss_pred HHHHHHHhc-CCCCchH-HH----HHHHHHHHhcCChHHHHHHHhcCCCCC---hH-HHHHHHHHHHhcCChHHHHHHHH
Q 036661 380 WFDNYACSG-GLKDNVM-VC----NALIDMYSKCGSIGDARELFYALPEKT---VV-SWTTMIAGCALNGEFVEALDLFH 449 (615)
Q Consensus 380 ~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~ 449 (615)
..++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+...+ +. ....+..+|...|++++|+..|+
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666666643 1122211 11 111233456688888888888877632 21 22225677888899999999999
Q ss_pred HHHHcCCCCC-----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhC----------CCCC---hhHHHHHHHHHHhcCC
Q 036661 450 QMMELDLRPN-----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ----------VNPE---LNHYSCMADLLGRKGK 511 (615)
Q Consensus 450 ~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~ 511 (615)
++.+.. |. ......+..++...|++++|..+++.+..... -.|+ ...+..++.++...|+
T Consensus 297 ~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 297 ELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 887643 32 23455666678888999999999888875310 0122 1244567788889999
Q ss_pred hHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 512 LKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 512 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
+++|+++++++. .+.+...+..++..+...|++++|++.++++++++|+++..+..++.++.+.|++++|.+.++++.
T Consensus 375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999876 333556778888888899999999999999999999999999999999999999999999999988
Q ss_pred hcCc
Q 036661 590 RNQV 593 (615)
Q Consensus 590 ~~~~ 593 (615)
+..+
T Consensus 455 ~~~P 458 (765)
T PRK10049 455 AREP 458 (765)
T ss_pred HhCC
Confidence 7654
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=4.7e-18 Score=176.49 Aligned_cols=421 Identities=10% Similarity=-0.071 Sum_probs=274.5
Q ss_pred HHHHHHHhhcCCChhHHHHhhccCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcC-ChhHHHHHHHHHHhc
Q 036661 92 QTTMVDMYAKCDRLDCAYKLFDKMPD--RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQA-DFVTVMGLTQAAIHA 168 (615)
Q Consensus 92 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 168 (615)
+......+.+.|++++|+..|+...+ |+...|..+..+|.+.|++++|++.++...+. .| +...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 44667788899999999999999764 77788999999999999999999999999874 45 455788888999999
Q ss_pred CChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 036661 169 KHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRH 248 (615)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 248 (615)
|++++|...+......+...+. ....++..+........+...++.- +++...+..+.. +...........-+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETK---PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 9999999888766554322121 1122222222211223333333332 223333332222 2221111111111111
Q ss_pred HHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHH---HHhcCCHHHHHHHHhccCCC---
Q 036661 249 MIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISM---YSKCGDIDSARFLFDGMCDR--- 322 (615)
Q Consensus 249 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~--- 322 (615)
-.+ ..|.. ...+..+... ....+++++|.+.|+.....
T Consensus 283 ~~~--~~~~~----------------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 283 SNE--LDEET----------------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred ccc--ccccc----------------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 100 00100 0000000000 02235566666666655321
Q ss_pred ---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHH
Q 036661 323 ---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNA 399 (615)
Q Consensus 323 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (615)
....|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|+++.|...++.+.+.. +.+..++..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 404 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH 404 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 23356666667777778888888877777642 2234466666777777788888888887777654 455677788
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCch
Q 036661 400 LIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFL 476 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 476 (615)
+...+...|++++|...|++... .+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCH
Confidence 88888888888888888887765 345677788888889999999999999988752 33457888888889999999
Q ss_pred HHHHHHHHHHHHhhCCCCCh-h-------HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhH
Q 036661 477 EKGWGYFNLMTKVYQVNPEL-N-------HYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 477 ~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~ 546 (615)
++|++.|++.... .|+. . .++.....+...|++++|.+++++.. ..|+ ...+..++..+.+.|++++
T Consensus 484 ~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 484 DEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred HHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 9999999988742 3321 1 12222233445689999999998875 4454 3467888899999999999
Q ss_pred HHHHHHHHhccCCCC
Q 036661 547 GEYVAYRLFELEPHS 561 (615)
Q Consensus 547 A~~~~~~~~~~~p~~ 561 (615)
|+..+++++++.+..
T Consensus 561 Ai~~~e~A~~l~~~~ 575 (615)
T TIGR00990 561 ALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHHhccH
Confidence 999999999887753
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.6e-18 Score=178.99 Aligned_cols=331 Identities=8% Similarity=-0.050 Sum_probs=269.1
Q ss_pred HHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHH
Q 036661 258 VTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGY 334 (615)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~ 334 (615)
......++..+.+.|+.+.|..++......... +......++.+....|++++|...|+.+ .+.+...+..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 334556777888999999999999999887633 3445566667777899999999999998 333556788889999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661 335 AQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR 414 (615)
Q Consensus 335 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 414 (615)
...|++++|...+++..... +.+...+..+...+...|+.+.|...++.+...... +...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998852 445667788888999999999999999988765533 33333333 3478899999999
Q ss_pred HHHhcCCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHH----HHHHHHHH
Q 036661 415 ELFYALPEK----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEK----GWGYFNLM 486 (615)
Q Consensus 415 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~ 486 (615)
..++.+... +...+..+..++...|++++|+..++++.+.+ +.+...+..+...+...|++++ |...++++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999987652 23344556778889999999999999999874 3345678888999999999986 89999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 487 TKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 487 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
.+. .+.+...+..++..+.+.|++++|...++++. ..|+ ...+..+..++...|++++|...++++++.+|+++..
T Consensus 277 l~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 277 LQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred Hhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 842 23346688899999999999999999999987 4454 5577788899999999999999999999999998877
Q ss_pred hHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661 565 YVEMANIYALGGRWDGVANLRTMMKRNQVKK 595 (615)
Q Consensus 565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 595 (615)
+..++.++...|++++|++.|+++.+..+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 7778999999999999999999998876643
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.5e-17 Score=175.69 Aligned_cols=412 Identities=10% Similarity=-0.021 Sum_probs=285.9
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHH
Q 036661 119 DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS 198 (615)
Q Consensus 119 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (615)
+.....-.+.+....|+.++|++++....... ..+...+..+...+...|++++|.++++..++.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33344455677888999999999999987622 3345568888999999999999999999998863 334667788889
Q ss_pred HHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHhccCchhhhh
Q 036661 199 AYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDV-TTVVSLLSSCVCPEALVQ 276 (615)
Q Consensus 199 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 276 (615)
++...|++++|...++++....| +.. +..+...+...|+.++|+..++++.+.. |+. ..+..+..++...+..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHH
Confidence 99999999999999999887755 444 8888889999999999999999999864 443 333444445555556665
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHH-----HhcCCh---hHHHHHHH
Q 036661 277 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGY-----AQKGDL---DEALRLFF 348 (615)
Q Consensus 277 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~---~~a~~~~~ 348 (615)
|...++.... .|+.. ..+ ... ....++... ...+++ ++|++.++
T Consensus 169 Al~~l~~~~~---~p~~~--~~l--------~~~---------------~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 169 ALGAIDDANL---TPAEK--RDL--------EAD---------------AAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHhCCC---CHHHH--HHH--------HHH---------------HHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 6555544332 11100 000 000 001111111 111222 56777777
Q ss_pred HHHHC-CCCCCHH-HHH----HHHHhhcccchhhHHHHHHHHHHhcCCC-CchHHHHHHHHHHHhcCChHHHHHHHhcCC
Q 036661 349 AMEAA-GEVPDLV-TVL----SMISGCGQSGALELGKWFDNYACSGGLK-DNVMVCNALIDMYSKCGSIGDARELFYALP 421 (615)
Q Consensus 349 ~~~~~-~~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 421 (615)
.+.+. ...|+.. .+. ..+..+...|+.+.|...|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 77643 1222221 111 1123344567888888888887776522 221 22224667888888888888888765
Q ss_pred CCC-------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHhhccCchHHHH
Q 036661 422 EKT-------VVSWTTMIAGCALNGEFVEALDLFHQMMELD-----------LRPNR---VTFLAVLQACTHAGFLEKGW 480 (615)
Q Consensus 422 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~p~~---~~~~~l~~~~~~~~~~~~a~ 480 (615)
..+ ......+..++...|++++|...++.+.+.. -.|+. ..+..+...+...|+.++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 422 2345566667888899999999998888752 11332 24556777888999999999
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661 481 GYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
++++++... .+.+...+..++.++...|++++|++.++++. ..|+ ...+..++..+...|++++|++.++++++..
T Consensus 380 ~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 380 MRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999853 34456788889999999999999999999987 5565 4566777778889999999999999999999
Q ss_pred CCCCCChH
Q 036661 559 PHSAAPYV 566 (615)
Q Consensus 559 p~~~~~~~ 566 (615)
|+++.+..
T Consensus 458 Pd~~~~~~ 465 (765)
T PRK10049 458 PQDPGVQR 465 (765)
T ss_pred CCCHHHHH
Confidence 99875443
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.9e-18 Score=170.54 Aligned_cols=220 Identities=19% Similarity=0.173 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHhh
Q 036661 297 NTLISMYSKCGDIDSARFLFDGMCD---RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL----VTVLSMISGC 369 (615)
Q Consensus 297 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~ 369 (615)
..+...|...|+++.|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3344444444444444444444422 12334444444444444555555444444443221111 1222333344
Q ss_pred cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CC--hHHHHHHHHHHHhcCChHHHH
Q 036661 370 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KT--VVSWTTMIAGCALNGEFVEAL 445 (615)
Q Consensus 370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~ 445 (615)
...|+++.|...++++.+.. +.+...+..+...+.+.|++++|.++++++.. |+ ..+++.++.+|...|++++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 44455555555555544432 22333444455555555555555555555443 11 123445555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhC
Q 036661 446 DLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR---KGKLKEALDFVQSM 522 (615)
Q Consensus 446 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 522 (615)
..++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.+++++
T Consensus 270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 555555553 344444455555555555555555555555532 3554445444444332 33555555555544
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=3.4e-16 Score=162.03 Aligned_cols=437 Identities=9% Similarity=-0.029 Sum_probs=256.9
Q ss_pred hcCCChhHHHHhhccCCC--CCc-hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhH---HHHHHHHHHhcCChhH
Q 036661 100 AKCDRLDCAYKLFDKMPD--RDV-ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVT---VMGLTQAAIHAKHLSL 173 (615)
Q Consensus 100 ~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~ 173 (615)
.+.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.. .|+... ...+...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 444555555555555443 211 012244444445555555555555444 221111 1111223444455555
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCC
Q 036661 174 LKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDG 253 (615)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 253 (615)
|.++++.+++... .+...+..++..+...++.++|++.++++....|+...+..++..+...++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 5555555554432 234455566666777777777777777777666665555333333333455555777777777653
Q ss_pred CCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHH
Q 036661 254 FRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISG 333 (615)
Q Consensus 254 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~ 333 (615)
+.+...+.....++.+.|-...|.++... .|+..+-..... =+.+.+.+..+....++..
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~~-------- 259 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQ-----LERDAAAEQVRMAVLPTRS-------- 259 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHH-----HHHHHHHHHHhhccccccc--------
Confidence 12233344444444444444444433332 111111000000 0111111211111100000
Q ss_pred HHhcCC---hhHHHHHHHHHHHC-C-CCCCHHHH----HHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 036661 334 YAQKGD---LDEALRLFFAMEAA-G-EVPDLVTV----LSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 404 (615)
Q Consensus 334 ~~~~~~---~~~a~~~~~~~~~~-~-~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (615)
...+ .+.|+.-++.+... + .++....| .-.+-++...++...+.+.++.+...+.+....+...+.++|
T Consensus 260 --~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 260 --ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred --chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 0111 24455555555442 1 12222222 223455677788888888888888877666667788888899
Q ss_pred HhcCChHHHHHHHhcCCCC---------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCCH---H
Q 036661 405 SKCGSIGDARELFYALPEK---------TVVSWTTMIAGCALNGEFVEALDLFHQMMELDL-----------RPNR---V 461 (615)
Q Consensus 405 ~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~ 461 (615)
...+++++|..+++.+..+ +......|.-++...+++++|..+++++.+.-. .||+ .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 9999999999988876442 223346788888999999999999999887311 1332 2
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHH
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACK 539 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~ 539 (615)
....++..+...|++.+|++.++++.. .-+-+......+++++...|.+.+|.+.++... ..|+ ..+....+.++.
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 344556778889999999999999975 445567788889999999999999999998876 5554 456677788888
Q ss_pred HhCChhHHHHHHHHHhccCCCCCCCh
Q 036661 540 IHRNIEIGEYVAYRLFELEPHSAAPY 565 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~~~~~~ 565 (615)
..+++.+|..+.+++++..|+++.+-
T Consensus 496 ~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 89999999999999999999987443
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.1e-15 Score=137.38 Aligned_cols=442 Identities=13% Similarity=0.094 Sum_probs=296.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH--hcCCchhH-hHHHHHHhhcCCCCChHHHHHHHH
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACA--KLSDFLYS-QMIHGHIVKSPFWSDIFVQTTMVD 97 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~ 97 (615)
+=|.|+ .++.+|.+.++.-+|+.|...|+..++..-..|++..+ ...+...+ ++.|-.|.+.| +.+..+|
T Consensus 118 ~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW----- 190 (625)
T ss_pred chhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence 344444 45678899999999999999999888887777766543 33333322 23444444444 3344444
Q ss_pred HhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHH
Q 036661 98 MYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSV 177 (615)
Q Consensus 98 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 177 (615)
+.|++.+ ++-+...++..+|..+|.++++--..++|.+++++......+.+..+||.+|.+-.-..+ +++
T Consensus 191 ---K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~L 260 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKL 260 (625)
T ss_pred ---ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHH
Confidence 3455444 444445556789999999999999999999999999998899999999999998664433 789
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC
Q 036661 178 HSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD 257 (615)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 257 (615)
..+|.+..+.||..|+|+++.+..+.|+++.|.+. |++++.+|++.|+.|.
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a-----------------------------alqil~EmKeiGVePs 311 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA-----------------------------ALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH-----------------------------HHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999888655 4455567778888888
Q ss_pred HHhHHHHHHhccCchhhhh-hhHHHHHHHHh----cC----CCChhHHHHHHHHHHhcCCHHHHHHHHhccCC-------
Q 036661 258 VTTVVSLLSSCVCPEALVQ-GRLVHSHGIHY----GF----DLDVSVINTLISMYSKCGDIDSARFLFDGMCD------- 321 (615)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 321 (615)
..+|..++..+.+.++... +..++.++... .+ +.+...|...+..|.+..+.+-|.++-.-+..
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 8888888877777666543 33444443321 12 22445566777777777777777666544411
Q ss_pred -CC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHH
Q 036661 322 -RT---RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVC 397 (615)
Q Consensus 322 -~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 397 (615)
++ ..-|..+....|+....+.-...|+.|.-.-+-|+..+...++++....+.++-.-+++..++..|........
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 11 12355666777778888888888888888777888888889999888888999888888888887754444443
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 036661 398 NALIDMYSKCGSIGDARELFYALPEKTVV---SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG 474 (615)
Q Consensus 398 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 474 (615)
.-++..+++.. ..|+.. -+.....-|+. .-.+.....-.+|.+..++ ....+.++-.+.+.|
T Consensus 472 eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G 536 (625)
T KOG4422|consen 472 EEILMLLARDK------------LHPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAG 536 (625)
T ss_pred HHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcc
Confidence 33333333322 012111 11111111111 1112222233455555443 344555556677889
Q ss_pred chHHHHHHHHHHHHhhCCCCChhHHH---HHHHHHHhcCChHHHHHHHHhCC
Q 036661 475 FLEKGWGYFNLMTKVYQVNPELNHYS---CMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 475 ~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
..++|.+++..+.+...-.|.....+ .+++.-.+..+.-.|..+++-+.
T Consensus 537 ~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 537 RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999988865544445444455 45556667788888888888775
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.2e-15 Score=158.02 Aligned_cols=439 Identities=10% Similarity=-0.040 Sum_probs=300.2
Q ss_pred HHHHHhcCChHHHHHHHHHhHHcCCcCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC-ccchHHH--HHHHHH
Q 036661 127 IVGFAQMGFLEKVLCLFYNMRLVGIQADF--VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA-DVSVCNT--WISAYA 201 (615)
Q Consensus 127 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~--l~~~~~ 201 (615)
+-...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...++... .| +...+.. +...|.
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHH
Confidence 34456889999999999998874 4554 233 77777777899999988888887 23 2233333 356788
Q ss_pred ccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHH
Q 036661 202 KCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLV 280 (615)
Q Consensus 202 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (615)
..|++++|.++|+++.+..| +...+..++..+...++.++|++.++++.... |+...+..++..+...++...|...
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHH
Confidence 88999999999998887755 45566667778888888999999888887653 5555554443334334455447777
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 036661 281 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV 360 (615)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 360 (615)
++++.+.. +.+...+..+..++.+.|-...|.++...-+ +..+-...... +.+.+.+..+- +..++..
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~l-----~~~~~a~~vr~----a~~~~~~ 259 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQL-----ERDAAAEQVRM----AVLPTRS 259 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHHH-----HHHHHHHHHhh----ccccccc
Confidence 77777764 4456666667777777777777776665532 11111110000 01112111111 1111100
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCc-----hHHHHHHHHHHHhcCChHHHHHHHhcCCCC----ChHHHHH
Q 036661 361 TVLSMISGCGQSGALELGKWFDNYACS-GGLKDN-----VMVCNALIDMYSKCGSIGDARELFYALPEK----TVVSWTT 430 (615)
Q Consensus 361 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 430 (615)
- -.+---.+.+..-++.+.. .+..|. ..+..-.+-++...|++.++++.++.+..+ ...+-..
T Consensus 260 ~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 E-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred c-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0 0001123445555555444 222232 122234456778899999999999999863 2346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCC----------CCC
Q 036661 431 MIAGCALNGEFVEALDLFHQMMELD-----LRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV----------NPE 495 (615)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~ 495 (615)
+..+|...+++++|+.+++++.... ..++......|.-++..++++++|..+++.+.+.... .|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 8999999999999999999997743 1223334577888999999999999999999863110 122
Q ss_pred h---hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHH
Q 036661 496 L---NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMAN 570 (615)
Q Consensus 496 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 570 (615)
. ..+..++..+.-.|+..+|.+.++++. .+-+...+..+...+...|.+.+|++.++.+..++|++..+....+.
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 1 234456788899999999999999997 44467788889999999999999999999999999999999999999
Q ss_pred HHHccCChHHHHHHHHHHHhcCc
Q 036661 571 IYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 571 ~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
++...|+|++|.++.+++.+..+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCC
Confidence 99999999999999988865444
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=2.3e-16 Score=142.73 Aligned_cols=272 Identities=12% Similarity=0.080 Sum_probs=212.6
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCcccHHHH------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccch
Q 036661 301 SMYSKCGDIDSARFLFDGMCDRTRVSWTAM------ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGA 374 (615)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 374 (615)
--|.+.|+++.|.++++-+.+.|..+-+.. +.-+....++..|.+.-+...... +-+......--......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 457789999999999988866655443322 222222445667766665554332 3444444333344556789
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036661 375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQM 451 (615)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 451 (615)
+++|.+.+++.....-......|+ +.-.+-..|++++|++.|-++.. .+....-.+...|-...++..|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999998766444444444 44456788999999999977654 67778888889999999999999999988
Q ss_pred HHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhh
Q 036661 452 MELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGI 530 (615)
Q Consensus 452 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 530 (615)
... ++.|+..+..|...|-+.|+-..|.+++-.-.+ -++-+..+...|...|....=+++|+.+|++.. .+|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 876 566778899999999999999999988766553 456678899999999999999999999999986 8999999
Q ss_pred HHHHHHHH-HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661 531 WGTLLCAC-KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGR 577 (615)
Q Consensus 531 ~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 577 (615)
|..++..| ++.|++.+|...|+...+..|.+..++..|+.++...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 98888666 568999999999999999999999999999999998885
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=7.5e-14 Score=132.39 Aligned_cols=459 Identities=13% Similarity=0.038 Sum_probs=311.5
Q ss_pred cCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHH
Q 036661 133 MGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELV 212 (615)
Q Consensus 133 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 212 (615)
..+.+.|.-++....+. ++.+. -|.-++++...++.|+.++....+. ++.+..+|.+....--..|..+...++
T Consensus 389 lE~~~darilL~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34444555555555543 11121 2333455556666677777766653 455666666666666667777777666
Q ss_pred HHhcccC------CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHhccCchhhhhhhHHHHHH
Q 036661 213 FRGIEEG------LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD--VTTVVSLLSSCVCPEALVQGRLVHSHG 284 (615)
Q Consensus 213 ~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (615)
.++-... ..+-..|-.=...|-..|..-.+..+....+..|+.-. ..|+......|.+.+.++-+..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 6543221 22344455555566666777777777777766665433 356666667777777777777777777
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036661 285 IHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVT 361 (615)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 361 (615)
++.- +.+..++......--..|..+....+|++. ++.....|......+-..|+...|..++.+..+.. +-+...
T Consensus 543 lqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei 620 (913)
T KOG0495|consen 543 LQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI 620 (913)
T ss_pred Hhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence 6643 445556666665555667777777777776 34455667777777777888888888888887764 335566
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hHHHHHHHHHHHhc
Q 036661 362 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KT-VVSWTTMIAGCALN 438 (615)
Q Consensus 362 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~ 438 (615)
+...+..-....+++.|..+|...... .|+..+|.--+....-.++.++|.+++++..+ |+ ...|..+.+.+-+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH
Confidence 777777777888888888888877653 56677777667767777888888888887766 43 34777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036661 439 GEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALD 517 (615)
Q Consensus 439 ~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 517 (615)
++.+.|.+.|..-.+. -|+. ..|..|...-.+.|.+..|..++++..- .-+.+...|...+++=.|.|+.+.|..
T Consensus 699 ~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 8888888877776654 3444 5677777777788888889999888874 334556778888888889999998888
Q ss_pred HHHhCC-CC-------------------------------CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661 518 FVQSMP-IK-------------------------------SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY 565 (615)
Q Consensus 518 ~~~~~~-~~-------------------------------p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 565 (615)
+..++. .- -|+..+......+....++++|...|+++++.+|++..+|
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 776653 11 1222334444556667788889999999999999988888
Q ss_pred HhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeEEEecCe
Q 036661 566 VEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGK 607 (615)
Q Consensus 566 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (615)
..+-..+.+.|.-++-.+++++..... +.-|..|..+-++
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~ 894 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhh
Confidence 888888889998888888887765433 3345555544433
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=3.3e-13 Score=128.12 Aligned_cols=438 Identities=12% Similarity=0.079 Sum_probs=296.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHH----HhcCCCccchHHHHHHHHH
Q 036661 126 MIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI----HIGVDADVSVCNTWISAYA 201 (615)
Q Consensus 126 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~ 201 (615)
|.-+|++..-++.|..+++..++. ++.+...|.+-...--..|+.+.+.++....+ ..|+..+...|..=...+-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 334566667778888888887764 66677777776666667777777777765443 4567777777777777777
Q ss_pred ccCCHHHHHHHHHhcccC----CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhh
Q 036661 202 KCNDLKMAELVFRGIEEG----LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQG 277 (615)
Q Consensus 202 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 277 (615)
+.|..-.+..+...+... ..-..+|..-...|.+.+.++-|..+|...++.- +-+...|......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHH
Confidence 777766666666554432 2234567777777777777777777777776532 22333444444444456667777
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036661 278 RLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAG 354 (615)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 354 (615)
..++..++..- +-....+......+-..|++..|..++.... +.+...|-.-+.....+.+++.|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 77777776653 3344455555666666777777777777662 224446666667777777777777777776653
Q ss_pred CCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChHHHHHH
Q 036661 355 EVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-TVVSWTTM 431 (615)
Q Consensus 355 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 431 (615)
.|+...|..-+..-.-.++.++|.+++++..+.- +.-...|..+.+.+-+.++.+.|.+.|..-.+ | .+..|-.|
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 4555555555554555667777777776666542 44455666777777777777777777766554 3 34466666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC--------------------
Q 036661 432 IAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ-------------------- 491 (615)
Q Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------- 491 (615)
...--+.|++..|..++++..-.+ +-|...|...++.-.+.|..+.|..++.++.+++.
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 666666677777777777776653 34456677777777777777777666666554321
Q ss_pred --------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 492 --------VNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 492 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
...|.++.-.++..+....++++|.+.|.+.. ..|| ..+|..+...+.++|.-++-.+++.+....+|..
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 12456667778888999999999999999987 5554 5688888899999999999999999999999998
Q ss_pred CCChHhHHH
Q 036661 562 AAPYVEMAN 570 (615)
Q Consensus 562 ~~~~~~l~~ 570 (615)
...|.....
T Consensus 885 G~~W~avSK 893 (913)
T KOG0495|consen 885 GELWQAVSK 893 (913)
T ss_pred CcHHHHHhh
Confidence 888877644
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=5.3e-14 Score=138.66 Aligned_cols=566 Identities=12% Similarity=0.039 Sum_probs=351.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCCh
Q 036661 26 IREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRL 105 (615)
Q Consensus 26 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 105 (615)
...+.-.|+.++|.+++...++..+. +...|.+|...|-..|+.+.+...+-.+.... +.|...|-.+.......|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 34444569999999999999987654 78899999999999999999998887776665 56678999999999999999
Q ss_pred hHHHHhhccCCCCCch---hHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH----HHHHHhcCChhHHHHHH
Q 036661 106 DCAYKLFDKMPDRDVA---SWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL----TQAAIHAKHLSLLKSVH 178 (615)
Q Consensus 106 ~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~~~~~~a~~~~ 178 (615)
+.|.-.|.+..+.++. .+---+..|-+.|+...|.+.|.++.+.....|..-+..+ ++.+...++-+.|.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998764333 3334466788999999999999999886543343333333 44455666668888887
Q ss_pred HHHHHhc-CCCccchHHHHHHHHHccCCHHHHHHHHHhcccC------------------------CCCcchHH----HH
Q 036661 179 SFGIHIG-VDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG------------------------LRTVVSWN----SI 229 (615)
Q Consensus 179 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~~~~~~----~l 229 (615)
+.....+ -..+...++.++..|.+...++.|.......... .++..+|+ .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 7777632 3345668889999999998888887766554430 11111222 12
Q ss_pred HHHHhcCCChhhHHHHHHHHHHCC--CCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 036661 230 IGGCTYGDKFDDSLNFYRHMIYDG--FRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG 307 (615)
Q Consensus 230 i~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 307 (615)
.-++......+....+........ +.-+...|..+..++...|.+..|..++..+......-+..+|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223334444444455555555555 334456788888899999999999999999888765566778888999999999
Q ss_pred CHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHhhcccchhh
Q 036661 308 DIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEA--------AGEVPDLVTVLSMISGCGQSGALE 376 (615)
Q Consensus 308 ~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~~ 376 (615)
..+.|...|+.+..- +...-..|...+-+.|++++|.+.+..+.. .+..|+..........+...|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999887332 344555667778889999999998888542 224455555555555566666655
Q ss_pred HHHHHHHHHHhcC----------------------CCCchHHHHHHHHHHHhcCChHHHHHHHhcC--------CCCCh-
Q 036661 377 LGKWFDNYACSGG----------------------LKDNVMVCNALIDMYSKCGSIGDARELFYAL--------PEKTV- 425 (615)
Q Consensus 377 ~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~- 425 (615)
.-..+...|.... .+....+...++.+-.+.++.....+-...- ..-+.
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 4443333332210 0111112222222222222222111111110 00011
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCH---HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-
Q 036661 426 ---VSWTTMIAGCALNGEFVEALDLFHQMMELDL--RPNR---VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL- 496 (615)
Q Consensus 426 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 496 (615)
..+..++.++++.+.+++|+.+...+..... .++. ..-...+.+....+++..|...++.+...+++..++
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1233444555566666666666665554321 1111 111222334455566666666666555443322221
Q ss_pred --hHHHH-----------------------------------HHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHH-HH
Q 036661 497 --NHYSC-----------------------------------MADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLL-CA 537 (615)
Q Consensus 497 --~~~~~-----------------------------------l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~-~~ 537 (615)
..|+. .+..+...+.+.-|+..+-++- ..|+.+..+.++ .+
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 12221 1222334466666766655443 445543333222 22
Q ss_pred HH----------HhCChhHHHHHHHHHhccCCC--CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 538 CK----------IHRNIEIGEYVAYRLFELEPH--SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 538 ~~----------~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+. ++-.+-++..++++..++... .-.+.+++|.+|...|-..-|..+|++.++-.+
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 11 122445666677666665543 567899999999999999999999999987653
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=4.1e-14 Score=139.41 Aligned_cols=527 Identities=10% Similarity=0.036 Sum_probs=375.2
Q ss_pred HHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhcc---CCCCCchhHHHHHHHHHhcCChHHHH
Q 036661 64 CAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDK---MPDRDVASWNAMIVGFAQMGFLEKVL 140 (615)
Q Consensus 64 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~ 140 (615)
+...|+.++|..++.++++.. +.....|-.|...|-..|+.+++...+-- +...|...|-.+.....+.|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 444599999999999999987 67788899999999999999999875443 33457789999999999999999999
Q ss_pred HHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHH----HHHHHHccCCHHHHHHHHHhc
Q 036661 141 CLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT----WISAYAKCNDLKMAELVFRGI 216 (615)
Q Consensus 141 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~ 216 (615)
-+|.+..+.. +++...+--=...|-+.|+...|..-+..+.....+.|..-... .+..+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999998864 33444444455667789999999999999998765444443333 345667778889999998876
Q ss_pred ccC---CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhH--------------------------HHHHHh
Q 036661 217 EEG---LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTV--------------------------VSLLSS 267 (615)
Q Consensus 217 ~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--------------------------~~ll~~ 267 (615)
... .-+...++.++..+.+...++.+......+......+|..-+ ..+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 653 446778899999999999999999999888762222222111 123334
Q ss_pred ccCchhhhhhhHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CcccHHHHHHHHHhcCChh
Q 036661 268 CVCPEALVQGRLVHSHGIHYGFDL--DVSVINTLISMYSKCGDIDSARFLFDGMCDR----TRVSWTAMISGYAQKGDLD 341 (615)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~ 341 (615)
+......+....+..........| +...|.-+..+|.+.|++.+|..+|..+... +...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 455666667777777777776443 5678899999999999999999999998432 5668999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh--------cCCCCchHHHHHHHHHHHhcCChHHH
Q 036661 342 EALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACS--------GGLKDNVMVCNALIDMYSKCGSIGDA 413 (615)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A 413 (615)
.|.+.|+...... +-+...-..|-..+.+.|+.++|.+.+..+.. .+..|...+.......+.+.|+.++-
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999988752 33444555677778899999999999998542 34566777777778888899988775
Q ss_pred HHHHhcCCCC--------------------------ChHHHHHHHHHHHhcCChHHHHHH------HHHHHHcCCCCCH-
Q 036661 414 RELFYALPEK--------------------------TVVSWTTMIAGCALNGEFVEALDL------FHQMMELDLRPNR- 460 (615)
Q Consensus 414 ~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~a~~~------~~~~~~~~~~p~~- 460 (615)
..+-..|..+ +......+..+-.+.++.....+- +......|+..+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 4443333221 111122222332233332221111 1112223333333
Q ss_pred -HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh---HH-HHHHHHHHhcCChHHHHHHHHhCC-C-----CCC-h
Q 036661 461 -VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN---HY-SCMADLLGRKGKLKEALDFVQSMP-I-----KSD-A 528 (615)
Q Consensus 461 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~-~-----~p~-~ 528 (615)
..+.-++.++++.+++++|+.+...+....-+..+.. .+ .....+....+++..|.+.++.+. . .|. .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2455667788999999999999998886544444433 22 334566778899999999999986 1 332 2
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC-CCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS-AAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
..|+...+...+.++-.--.+.+..+...+|++ +..+...|..+...+.|..|+..+-++-...+
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p 771 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP 771 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC
Confidence 355555566666676666667777777778877 66666778888899999999998888776664
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.2e-15 Score=135.56 Aligned_cols=369 Identities=11% Similarity=0.073 Sum_probs=228.0
Q ss_pred hccCCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHH
Q 036661 12 KIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFV 91 (615)
Q Consensus 12 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 91 (615)
++.+.+.. +|.+||.++++-...+.|.+++.+..+...+.+..+||.+|.+..-..+ +.+..+|......||..+
T Consensus 201 E~~PKT~e-t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 201 ETLPKTDE-TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFT 275 (625)
T ss_pred hhcCCCch-hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHh
Confidence 33344555 6777777777777777777777777777677777777777766443322 567777777777777777
Q ss_pred HHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCCh
Q 036661 92 QTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHL 171 (615)
Q Consensus 92 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 171 (615)
+|+++++.++.|+++.|.+ .|++++-+|++-|+.|...+|..+|..+++.++.
T Consensus 276 fNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 7777777777776665543 3566778888888888888888888888877776
Q ss_pred hHH-HHHHHHHHHh----cCC----CccchHHHHHHHHHccCCHHHHHHHHHhcccC------CC---CcchHHHHHHHH
Q 036661 172 SLL-KSVHSFGIHI----GVD----ADVSVCNTWISAYAKCNDLKMAELVFRGIEEG------LR---TVVSWNSIIGGC 233 (615)
Q Consensus 172 ~~a-~~~~~~~~~~----~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~---~~~~~~~li~~~ 233 (615)
.+. ..++..+... .++ .|...|...+..|.+..+.+-|.++-.-+..+ .| ...-|..+....
T Consensus 329 ~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~li 408 (625)
T KOG4422|consen 329 QKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLI 408 (625)
T ss_pred hhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHH
Confidence 543 3333333321 122 23445677777787888888887776655443 12 233466677777
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 036661 234 TYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR 313 (615)
Q Consensus 234 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 313 (615)
++....+....+|+.|+..-+-|+..+...++++....|.++-..+++..++..|.........-++..+++..
T Consensus 409 cq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------ 482 (625)
T KOG4422|consen 409 CQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------ 482 (625)
T ss_pred HHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------
Confidence 88888899999999999888889999999999999999999999999999988775444333333333333221
Q ss_pred HHHhccCCCCcccHHHHHHHHHhc-CCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcC-C
Q 036661 314 FLFDGMCDRTRVSWTAMISGYAQK-GDL-DEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGG-L 390 (615)
Q Consensus 314 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~ 390 (615)
..|+...-..+-...++. -++ +.....-.++... .......+.+...+.+.|..++|.+++..+.+.+ -
T Consensus 483 ------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 483 ------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 112111111111111110 011 1111112223333 2333444555555667777777777777774422 2
Q ss_pred C---CchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH
Q 036661 391 K---DNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV 426 (615)
Q Consensus 391 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 426 (615)
. |......-+++.-.+.++...|..+++-+...|..
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 2 22333335555566677777777777776554443
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=9.8e-16 Score=138.70 Aligned_cols=431 Identities=12% Similarity=0.079 Sum_probs=300.6
Q ss_pred HHHHHHHH---HHhcCChhHHHHHHHHHHHhcCCCccch-HHHHHHHHHccCCHHHHHHHHHhcccCCCCc------chH
Q 036661 157 TVMGLTQA---AIHAKHLSLLKSVHSFGIHIGVDADVSV-CNTWISAYAKCNDLKMAELVFRGIEEGLRTV------VSW 226 (615)
Q Consensus 157 ~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~ 226 (615)
||+.|... |....-..+|+..++.+.+...-|+... -..+.+.+.+...+.+|.++++......|++ ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 45544443 4444556778888888888777777653 3456678889999999999998877665543 234
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCC------------CChh
Q 036661 227 NSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFD------------LDVS 294 (615)
Q Consensus 227 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~ 294 (615)
+.+.-.+.+.|.++.|+..|+...+.. |+..+-..++-++...|+.+.....|..++..... |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 444456889999999999999988754 88888777888888899999999999998864322 2223
Q ss_pred HHHHHH-----HHHHhcCC--HHHHH----HHHhccCCCCccc---H------------------HHHHHHHHhcCChhH
Q 036661 295 VINTLI-----SMYSKCGD--IDSAR----FLFDGMCDRTRVS---W------------------TAMISGYAQKGDLDE 342 (615)
Q Consensus 295 ~~~~l~-----~~~~~~~~--~~~a~----~~~~~~~~~~~~~---~------------------~~ll~~~~~~~~~~~ 342 (615)
..+.-+ .-..+.+. .+++. ++..-+..|+... | -.-...+.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 332222 22222221 22222 1222222332210 1 011335788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhh--cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661 343 ALRLFFAMEAAGEVPDLVTVLSMISGC--GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 420 (615)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 420 (615)
|+++++-+....-+.-...-+.|...+ ....++..|.++-+...... ..+......-.......|++++|.+.+++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 999998887664443333333332222 22336677777766665433 233333333333445678999999999999
Q ss_pred CCCChHHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh
Q 036661 421 PEKTVVSWTTM---IAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN 497 (615)
Q Consensus 421 ~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 497 (615)
...|...-.+| .-.+-..|+.++|+..|-++... +..+...+..+...|....+...|++++..... -++.|+.
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence 88776543333 34467789999999999988764 355667888889999999999999999988874 5666788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh-CC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQS-MP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG 575 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 575 (615)
+.+.|.+.|-+.|+...|+++.-. .. ++.+..+..-|..-|....-.++|+.+++++--+.|+.......++.++.+.
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 999999999999999999998644 34 5556677777777777777889999999999999999766667778899999
Q ss_pred CChHHHHHHHHHHHhcCc
Q 036661 576 GRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 576 g~~~~A~~~~~~~~~~~~ 593 (615)
|+|.+|.++|+....+-+
T Consensus 674 gnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred ccHHHHHHHHHHHHHhCc
Confidence 999999999998876544
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=2.6e-17 Score=153.45 Aligned_cols=256 Identities=18% Similarity=0.157 Sum_probs=112.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 036661 330 MISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVL-SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 408 (615)
Q Consensus 330 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (615)
+...+.+.|++++|++++++......+|+...|. .+...+...++.+.|...++.+...+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3455556666777777665444332233333333 33334455667777777777776654 2345556666666 6788
Q ss_pred ChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCchHHHHHHHHH
Q 036661 409 SIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNRVTFLAVLQACTHAGFLEKGWGYFNL 485 (615)
Q Consensus 409 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 485 (615)
++++|.+++...-+ +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776543 566677788888899999999999999987643 345667788888899999999999999999
Q ss_pred HHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661 486 MTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 486 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 562 (615)
..+. .|+ ......++..+...|+.+++.++++... .+.++..+..++.++...|+.++|...++++.+.+|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9853 454 6778889999999999999888887775 345666788999999999999999999999999999999
Q ss_pred CChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 563 APYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.....+++++...|+.++|.++++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987754
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.6e-13 Score=125.97 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=170.6
Q ss_pred cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHH
Q 036661 370 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALD 446 (615)
Q Consensus 370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 446 (615)
.-.|+.-.+..-|+..++....++ ..|--+..+|....+.++-...|+.... .|+.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 345677778888888877653332 2256666778888999999999987665 466788888888888899999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 036661 447 LFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I 524 (615)
Q Consensus 447 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 524 (615)
=|++.++. .|+. ..|..+.-+..+.+.++++...|++..++ ++-.+.+|+..+.++..++++++|.+.|+... .
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999986 5554 67888887888899999999999999974 45567788889999999999999999999875 4
Q ss_pred CCC-------hhhH-HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 525 KSD-------AGIW-GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 525 ~p~-------~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
.|+ ...+ ..-+..++-.+++..|++++.++++++|....+|..|+.+..++|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 1111 1111223345899999999999999999999999999999999999999999998764
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=8.7e-13 Score=129.63 Aligned_cols=532 Identities=13% Similarity=0.022 Sum_probs=299.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCC
Q 036661 40 LLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRD 119 (615)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 119 (615)
.+|-.+...|+.|+..||..++..|+..|+.+.|- +|.-|.-...+.+...++.++....+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46777888999999999999999999999999988 9999988888888889999999999989887766 688
Q ss_pred chhHHHHHHHHHhcCChHH---HHHHHHHhHH----cCCcCChhHHHHHHHHHHhcCChh--------HHHHHHHHHHHh
Q 036661 120 VASWNAMIVGFAQMGFLEK---VLCLFYNMRL----VGIQADFVTVMGLTQAAIHAKHLS--------LLKSVHSFGIHI 184 (615)
Q Consensus 120 ~~~~~~li~~~~~~g~~~~---a~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~ 184 (615)
..+|..|..+|.+.||... +.+.++.... .|+..-..-+-..++ |+..-..+ --+.++...++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~-c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIH-CCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcc-cCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998654 3332222221 221111111111111 11111111 112233333333
Q ss_pred cCCCccchHH-H---HHHHHHc-cCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHH
Q 036661 185 GVDADVSVCN-T---WISAYAK-CNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVT 259 (615)
Q Consensus 185 ~~~~~~~~~~-~---l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 259 (615)
+.......++ . +++-... ...+++-..+.+...+ .++..++...+..-..+|+.+.|..++.+|.+.|.+.+..
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 3111111111 1 1222222 2334444455555554 6899999999999999999999999999999999988888
Q ss_pred hHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcC-
Q 036661 260 TVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKG- 338 (615)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~- 338 (615)
-|..++-+ .++...+..+++.|...|+.|+..|+...+..+...|....+... .+....+.+-..+-+-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhccc
Confidence 88887765 788888899999999999999999988777777665442222211 112222222222222222
Q ss_pred ----C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCC---CCchHHHHHHHHHHHh
Q 036661 339 ----D-----LDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL---KDNVMVCNALIDMYSK 406 (615)
Q Consensus 339 ----~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 406 (615)
+ ..-....+.+..-.|.......| +++.-...+|.-+..+++...+..... ..++..+..++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 1 11122222222222333233222 222223335666666666555543211 1123334333433332
Q ss_pred cCChHHHHHHHh--cCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC-------CHHHHHHHHHHhh
Q 036661 407 CGSIGDARELFY--ALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMME----LDLRP-------NRVTFLAVLQACT 471 (615)
Q Consensus 407 ~g~~~~A~~~~~--~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p-------~~~~~~~l~~~~~ 471 (615)
.-+..-...++. +... -+...-..+.....+. +...+++-+..+.. .-..| -...-+.++..|+
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 221111111110 0000 0000000011111110 11111111111111 00111 1123344555555
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCChhhHHHHHHHHHHhCChhH
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDAGIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~ 546 (615)
+.-+..+++..-+..... -++ ..|..|++.+....+.+.|..+..+.. ..-+...+..+.....+.+....
T Consensus 471 se~n~lK~l~~~ekye~~-lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d 546 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-LFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD 546 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence 555555555544444421 222 668888898888899999999888876 22344456667777788888888
Q ss_pred HHHHHHHHhcc---CCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661 547 GEYVAYRLFEL---EPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKK 595 (615)
Q Consensus 547 A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 595 (615)
+.+++++..+. .|.-......+.+-....|+.+.-.+..+-+...|+.-
T Consensus 547 l~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 547 LSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88888777652 23333445555666677888888888888888877765
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=7.1e-13 Score=130.23 Aligned_cols=563 Identities=11% Similarity=0.038 Sum_probs=298.6
Q ss_pred CCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCC------------------------CCCCcccHHHHHHHHHhcCCc
Q 036661 15 RSSTINQWNSQIREAVDKNEAHKALLLFRRMKKND------------------------IEPNNLTFPFIAKACAKLSDF 70 (615)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~~~ll~~~~~~~~~ 70 (615)
-|+.+ +|.++|..|+..|+.+.|- +|..|.-.. -.|.+.+|..|+.+|...||.
T Consensus 22 ~PnRv-tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 22 LPNRV-TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred CCchh-hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence 56677 9999999999999999998 887776432 235666788888888888776
Q ss_pred hh---HhHHHHHHh----hcCC-----------------CCChHHHHHHHHHhhcCCChhHHHHhhccCC----------
Q 036661 71 LY---SQMIHGHIV----KSPF-----------------WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMP---------- 116 (615)
Q Consensus 71 ~~---a~~~~~~~~----~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------- 116 (615)
.. +.+.+..+. ..|+ -||.. ..+......|-|+.+++++..++
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 44 222122211 1111 11111 11112222333444444443222
Q ss_pred ------------------------CCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChh
Q 036661 117 ------------------------DRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLS 172 (615)
Q Consensus 117 ------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 172 (615)
.++..+|..++.+-.-+|+.+.|..++.+|++.|+..+..-|-.++-+ .++..
T Consensus 177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence 145666777777777777788888888888877777776666555554 66777
Q ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCC-----C-----hhhH
Q 036661 173 LLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGD-----K-----FDDS 242 (615)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~-----~~~a 242 (615)
.+..+++.|...|+.|+..|+...+-.+...|....+... .+....+++-+.+-+-.| + ....
T Consensus 254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-------sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v 326 (1088)
T KOG4318|consen 254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-------SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSV 326 (1088)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-------cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 7777777777777778777777766666654432211111 222222222111111111 1 1111
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcC---CCChhHHHHHHHHHHhc-------------
Q 036661 243 LNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGF---DLDVSVINTLISMYSKC------------- 306 (615)
Q Consensus 243 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~------------- 306 (615)
...+.+..-.|+.-....|....+. ...|..+.+.++...+..-.. ..++..+..++.-|.+.
T Consensus 327 ~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~ 405 (1088)
T KOG4318|consen 327 IGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAG 405 (1088)
T ss_pred HHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1111111112222222222222211 113433444444333332111 11122232223222221
Q ss_pred ---------CCHHHHHHHHhccCCC----------------Ccc-----------cHHHHHHHHHhcCChhHHHHHHHHH
Q 036661 307 ---------GDIDSARFLFDGMCDR----------------TRV-----------SWTAMISGYAQKGDLDEALRLFFAM 350 (615)
Q Consensus 307 ---------~~~~~a~~~~~~~~~~----------------~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~ 350 (615)
.+.....+......+. ... .-+.++..+++.-+..+++..-+..
T Consensus 406 qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 406 QGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111000 001 1233444444444444444333333
Q ss_pred HHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhc--CCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----C
Q 036661 351 EAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSG--GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----K 423 (615)
Q Consensus 351 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~ 423 (615)
...- -+ ..|..++.-+......+.|..+.++.... .+..+...+..+.+.+.+.+....+..+++++.+ +
T Consensus 486 e~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~ 562 (1088)
T KOG4318|consen 486 EDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEP 562 (1088)
T ss_pred HHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCc
Confidence 2221 11 56788888888888888888888887653 3345666778888888888888889888888776 1
Q ss_pred C-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHh--
Q 036661 424 T-VVSWTTMIAGCALNGEFVEALDLFHQMMELDL------------------------------RPNRVTFLAVLQAC-- 470 (615)
Q Consensus 424 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~p~~~~~~~l~~~~-- 470 (615)
+ ..++.-++......|+.+...++++-+...|+ +|.+.....+.+.+
T Consensus 563 ~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 563 LVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred hHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHh
Confidence 1 22334444555556666666555555544332 23332222222222
Q ss_pred -------------------hccCchHHHHHHHHHHH--HhhC---------CCC---------ChhHHHHHHHHHHhcCC
Q 036661 471 -------------------THAGFLEKGWGYFNLMT--KVYQ---------VNP---------ELNHYSCMADLLGRKGK 511 (615)
Q Consensus 471 -------------------~~~~~~~~a~~~~~~~~--~~~~---------~~~---------~~~~~~~l~~~~~~~g~ 511 (615)
.+.|++.++.++.+.-- -+.+ +.| +......|...|.+.|+
T Consensus 643 e~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~ 722 (1088)
T KOG4318|consen 643 ETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGR 722 (1088)
T ss_pred hccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhH
Confidence 22222222222211100 0000 000 11223357778999999
Q ss_pred hHHHHHHHHhCCCCCChhhHHHHHHHHHHh---CChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHH
Q 036661 512 LKEALDFVQSMPIKSDAGIWGTLLCACKIH---RNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLR 585 (615)
Q Consensus 512 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~ 585 (615)
++.|..++.++...|.+.....++..+.+. -++.++....+++.+..|..+ ..|...+.+..+....+.|.+.+
T Consensus 723 ~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f 802 (1088)
T KOG4318|consen 723 IERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCF 802 (1088)
T ss_pred HHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHH
Confidence 999999999999888888888888777653 366777778888877766543 34445555566666666889999
Q ss_pred HHHHhcCcccC
Q 036661 586 TMMKRNQVKKF 596 (615)
Q Consensus 586 ~~~~~~~~~~~ 596 (615)
.+..++.+..+
T Consensus 803 ~r~eeq~~v~t 813 (1088)
T KOG4318|consen 803 ERLEEQLTVST 813 (1088)
T ss_pred HHHHHccCCCc
Confidence 99988865443
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=6.7e-11 Score=108.53 Aligned_cols=462 Identities=10% Similarity=0.043 Sum_probs=329.2
Q ss_pred CChHHHHHHHHHhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChh-HHHHHH
Q 036661 87 SDIFVQTTMVDMYAKCDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFV-TVMGLT 162 (615)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll 162 (615)
.+...|-...+.=...+++..|..+|+.... ++...|--.+..=.++..+..|..+++..... -|-+. .|..-+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 3444454444444556778888888888765 56777888888888999999999999988763 34332 233444
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhH
Q 036661 163 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDS 242 (615)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 242 (615)
-.--..|++..|.++|+...+ ..|+...|++.++.=.+-+.++.|..+++...--.|++.+|-.....-.++|....+
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 445567999999999998876 579999999999999999999999999999776689999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHhc----cCchhhhhhhHHHHHHHHhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHH-
Q 036661 243 LNFYRHMIYDGFRPDVTTVVSLLSSC----VCPEALVQGRLVHSHGIHYGFDL-DVSVINTLISMYSKCGDIDSARFLF- 316 (615)
Q Consensus 243 ~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~- 316 (615)
..+|....+. ..|...-..++.++ .+...++.|..++.-.++.-... ....|..+...--+-|+-.......
T Consensus 227 R~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 9999887663 12333333333333 35667888888888887763221 1344555554444556655444432
Q ss_pred -------hccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHhh---cccchhh
Q 036661 317 -------DGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV-------TVLSMISGC---GQSGALE 376 (615)
Q Consensus 317 -------~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~---~~~~~~~ 376 (615)
+.+... |-.+|-..++.--..|+.+...++|+..+.. ++|-.. .|.-+=-+| ....+++
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 222222 4456777777777889999999999998875 555321 121111111 2456888
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHH----HHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661 377 LGKWFDNYACSGGLKDNVMVCNAL----IDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQ 450 (615)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 450 (615)
.+.++++...+ -++....++.-+ ...-.++.++..|.+++..... |...+|...+..-.+.++++.+..++++
T Consensus 384 rtr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 384 RTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999988887 234444444433 3444578899999999988766 7777888888888899999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh
Q 036661 451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG 529 (615)
Q Consensus 451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 529 (615)
.++-+ +-|..+|......-...|+.+.|..+|.-+.....+.-....|.+.++.=...|.++.|..+++++. ..+...
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 99864 4455788888888888999999999999998643333334467777777788999999999999987 555556
Q ss_pred hHHHHHHHHH-----HhC-----------ChhHHHHHHHHHhcc
Q 036661 530 IWGTLLCACK-----IHR-----------NIEIGEYVAYRLFEL 557 (615)
Q Consensus 530 ~~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~~ 557 (615)
+|...+..-. +.+ +...|.++|+++...
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 7776664433 334 567888888888653
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=3.9e-13 Score=131.13 Aligned_cols=275 Identities=9% Similarity=0.005 Sum_probs=185.8
Q ss_pred cCCHHHHHHHHhccCCC--Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHhhcccchhhHHHH
Q 036661 306 CGDIDSARFLFDGMCDR--TRV-SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVL--SMISGCGQSGALELGKW 380 (615)
Q Consensus 306 ~~~~~~a~~~~~~~~~~--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 380 (615)
.|+++.|++.+....+. ++. .|........+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777766655332 122 2222233446677777777777777653 44443222 22455667777777777
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC---Ch--------HHHHHHHHHHHhcCChHHHHHHHH
Q 036661 381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK---TV--------VSWTTMIAGCALNGEFVEALDLFH 449 (615)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~a~~~~~ 449 (615)
.++.+.+.. +.++..+..+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777665 556667777777888888888888777766642 11 123333443444455666666777
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-
Q 036661 450 QMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD- 527 (615)
Q Consensus 450 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~- 527 (615)
.+... .+.++.....+..++...|+.++|.+.+++..+ .+|+.... ++......++.+++++.+++.. ..|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66543 245667778888888889999999988888874 24554322 2333345588888888888876 4454
Q ss_pred hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
......++..|...+++++|.+.++++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4466788888889999999999999999999884 5567889999999999999999887654
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.2e-11 Score=113.23 Aligned_cols=395 Identities=11% Similarity=0.081 Sum_probs=265.3
Q ss_pred HHHccCCHHHHHHHHHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhh
Q 036661 199 AYAKCNDLKMAELVFRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQG 277 (615)
Q Consensus 199 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 277 (615)
-=...+++..|..+|+..... ..+...|-..+..-.++..+..|..++++.+..-+..|..-| .-+..=-..|++..|
T Consensus 82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHH
Confidence 334456677777777776654 556777777777777777788888888777664322222222 222223346778888
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036661 278 RLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM--CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE 355 (615)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 355 (615)
.++|..-.+. .|+...+.+.++.-.+-+.++.|..++++. +.|++..|-...+--.++|....+..+|....+.
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 8888776654 688888888888888888888888888885 6778888888888778888888888888876653
Q ss_pred CCCHH----HHHHHHHhhcccchhhHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHH--------hcCCC
Q 036661 356 VPDLV----TVLSMISGCGQSGALELGKWFDNYACSGGLKD-NVMVCNALIDMYSKCGSIGDARELF--------YALPE 422 (615)
Q Consensus 356 ~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~ 422 (615)
-.|.. .+.++..-=.+...++.|.-++....+.-.+. ....|..+...--+-|+.....+.. +....
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 12222 23333333345667888888888777643221 2445555554444556554443332 12222
Q ss_pred C---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHH---H-HH-H---hhccCchHHHHHHHHHHHHh
Q 036661 423 K---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV--TFLA---V-LQ-A---CTHAGFLEKGWGYFNLMTKV 489 (615)
Q Consensus 423 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~---l-~~-~---~~~~~~~~~a~~~~~~~~~~ 489 (615)
. |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.. | ++ + -....+.+.+.++++...+
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 2 4457777777777778888888888888875 455321 1211 1 11 1 1246678888888888874
Q ss_pred hCCCCChhHHHH----HHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 490 YQVNPELNHYSC----MADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 490 ~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
-++....+|.. .+....++.+...|.+++-.+. ..|...++...+..-.+.++++....+|++.++-.|.+..+
T Consensus 395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 34444444443 3344457788888888887766 67778888888888888888888888888888888888888
Q ss_pred hHhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeE
Q 036661 565 YVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSL 601 (615)
Q Consensus 565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 601 (615)
|...+.+-...|+.+.|+.+|+...+++....|..-|
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 8888888888888888888888888877766664433
No 42
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=4.8e-10 Score=106.95 Aligned_cols=546 Identities=12% Similarity=0.073 Sum_probs=285.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHh
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKN-DIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMY 99 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (615)
.|-.-++.+.++|+.......|++.... .+.-....|...+......+-++.+.+++++-++.. +..-+..+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 4888888999999999999999887763 233345578888888888888889999999888643 33466678888
Q ss_pred hcCCChhHHHHhhccCCCC----------CchhHHHHHHHHHhcCChHHHH---HHHHHhHHcCCcCCh--hHHHHHHHH
Q 036661 100 AKCDRLDCAYKLFDKMPDR----------DVASWNAMIVGFAQMGFLEKVL---CLFYNMRLVGIQADF--VTVMGLTQA 164 (615)
Q Consensus 100 ~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~---~~~~~m~~~~~~p~~--~~~~~ll~~ 164 (615)
+..+++++|-+.+..+... +-..|+.+-...+++-+.-.-+ .++..+.. .-+|. ..|.+|..-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHH
Confidence 8889999988888877632 3334666655555544332222 22222222 23333 236777777
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC--CCCcchHHHHHHHHhc--CCChh
Q 036661 165 AIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG--LRTVVSWNSIIGGCTY--GDKFD 240 (615)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~--~~~~~ 240 (615)
|.+.|.++.|..++++.+..- .++.-|+.+.++|+....-.-+..+=-.-.+. ..+...+...+..+-. .+..
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~- 334 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP- 334 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc-
Confidence 778888888888877776542 23444555555555432211111111000000 1111111111111000 0000
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcC-----CCChhHHHHHHHHHHhcCCHHHHHHH
Q 036661 241 DSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGF-----DLDVSVINTLISMYSKCGDIDSARFL 315 (615)
Q Consensus 241 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 315 (615)
-+++...-..-+-+..++..-+. ...|+..+....+.++++.-- -.....+..+...|-+.|+++.|..+
T Consensus 335 ---~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 335 ---LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ---hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 00111111111122222222221 112333333344444433210 01123466677777778888888888
Q ss_pred HhccCCCCcc-------cHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CC------CHHHHHHHHHhhcc
Q 036661 316 FDGMCDRTRV-------SWTAMISGYAQKGDLDEALRLFFAMEAAGE-----------VP------DLVTVLSMISGCGQ 371 (615)
Q Consensus 316 ~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~ll~~~~~ 371 (615)
|++..+-+-. .|......-.++.+++.|+++++......- ++ +...|...+..-..
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 8777444333 344444444456667777777666543211 11 11223334444445
Q ss_pred cchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC----CCh-HHHHHHHHHHHh---cCChHH
Q 036661 372 SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE----KTV-VSWTTMIAGCAL---NGEFVE 443 (615)
Q Consensus 372 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~ 443 (615)
.|-++....+++.+.+..+... .+.......+-...-++++.+++++-.. |++ ..|+..+..+.+ ....+.
T Consensus 490 ~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 5667777778888777654322 2222233344555667888888887554 444 367766665543 246788
Q ss_pred HHHHHHHHHHcCCCCCHHH--HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHH
Q 036661 444 ALDLFHQMMELDLRPNRVT--FLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL--NHYSCMADLLGRKGKLKEALDFV 519 (615)
Q Consensus 444 a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~ 519 (615)
|..+|++..+ |.+|...- |......-.+-|....|..+++++.. ++++.. .+|+..+.--...=-.....+++
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iY 645 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIY 645 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 8888888888 56665432 22222223345777778888887764 443332 34444443222111112223333
Q ss_pred HhCC-CCCChhhHHH---HHHHHHHhCChhHHHHHHHHHhcc-CCC-CCCChHhHHHHHHccCChHHHHHH
Q 036661 520 QSMP-IKSDAGIWGT---LLCACKIHRNIEIGEYVAYRLFEL-EPH-SAAPYVEMANIYALGGRWDGVANL 584 (615)
Q Consensus 520 ~~~~-~~p~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 584 (615)
+++. .-|+...-.. ....-.+.|..+.|..+|...-++ +|. ++..|...-..-.+.|+-+.-.++
T Consensus 646 ekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 646 EKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 3332 2233322211 222234567777777777666654 343 455666666666666764444443
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.4e-12 Score=118.31 Aligned_cols=277 Identities=9% Similarity=0.024 Sum_probs=155.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036661 290 DLDVSVINTLISMYSKCGDIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMI 366 (615)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 366 (615)
..+..+...-.+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+-.++.+. .|-.+.+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 445555666666666777777777777766333 3344555566666777766666666666654 344455666666
Q ss_pred HhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHH
Q 036661 367 SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVE 443 (615)
Q Consensus 367 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 443 (615)
--|...|..++|.++|.....-+ +.-...|-.+...|+-.|..+.|...+....+ .....+--+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 55666666666666666654433 12223455566666666666666655543332 111122223444556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhh-CCCC----ChhHHHHHHHHHHhcCChHHHHHH
Q 036661 444 ALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVY-QVNP----ELNHYSCMADLLGRKGKLKEALDF 518 (615)
Q Consensus 444 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 518 (615)
|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+.....- .+.+ -..+++.|+.+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 666666666531 2333455555555555566666666666654210 0001 123455566666666666666666
Q ss_pred HHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661 519 VQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA 569 (615)
Q Consensus 519 ~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 569 (615)
+++.. .+.+..++..++-.+...|+++.|...|.+++-+.|++..+-..|.
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 66654 3334556666666666666666666666666666666544444443
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=6.4e-12 Score=122.68 Aligned_cols=248 Identities=11% Similarity=-0.047 Sum_probs=168.8
Q ss_pred HhcCCHHHHHHHHhccCCC--CcccHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHH
Q 036661 304 SKCGDIDSARFLFDGMCDR--TRVSWT--AMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGK 379 (615)
Q Consensus 304 ~~~~~~~~a~~~~~~~~~~--~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 379 (615)
.+.|+++.|...+.++.+. +..... .....+...|+++.|...++++.+.. +-+......+...+.+.|+++.+.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555555222 221111 22345555666666666666665543 334445555556666666666666
Q ss_pred HHHHHHHhcCCCCch-------HHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 036661 380 WFDNYACSGGLKDNV-------MVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFH 449 (615)
Q Consensus 380 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 449 (615)
.++..+.+.+..++. ..|..++.......+.+...++++.++. .++.....+...+...|+.++|.+.++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666654433222 1223333333444566777777777765 477788889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh
Q 036661 450 QMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA 528 (615)
Q Consensus 450 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 528 (615)
+..+. +|+.... ++.+....++.+++++..+...+. .+-|...+..++..+.+.|++++|.+.|++.. ..|+.
T Consensus 288 ~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 288 DGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 99884 5665333 233344568999999999998864 34445667789999999999999999999987 78998
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
..+..+...+.+.|+.++|.+++++.+.+-
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888889999999999999999999998754
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=2.1e-12 Score=126.89 Aligned_cols=278 Identities=10% Similarity=-0.025 Sum_probs=141.8
Q ss_pred cCCHHHHHHHHhccCCC--C-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHhhcccchhhHHHH
Q 036661 306 CGDIDSARFLFDGMCDR--T-RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL--VTVLSMISGCGQSGALELGKW 380 (615)
Q Consensus 306 ~~~~~~a~~~~~~~~~~--~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~ 380 (615)
.|+++.|.+.+....+. + ...+-....+..+.|+++.|.+.+.+..+.. |+. .........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444221 1 1122222334444555555555555554432 222 122223444445555555555
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHH----HHHHHHHhcCChHHHHHHHHHHHH
Q 036661 381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWT----TMIAGCALNGEFVEALDLFHQMME 453 (615)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~ 453 (615)
.++.+.+.. +.++.++..+...+...|+++.|.+.+..+.+ .+...+. .........+..+.....+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555544 33444555555555555666555555555443 1211111 111111222222222333333333
Q ss_pred cC---CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 036661 454 LD---LRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNH---YSCMADLLGRKGKLKEALDFVQSMP-IKS 526 (615)
Q Consensus 454 ~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 526 (615)
.. .+.+...+..+...+...|+.++|.+.+++..+. .|+... ...........++.+.+.+.+++.. ..|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 21 1125556666666777777777777777776643 233221 1111112223456666666666654 333
Q ss_pred Ch---hhHHHHHHHHHHhCChhHHHHHHH--HHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 527 DA---GIWGTLLCACKIHRNIEIGEYVAY--RLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 527 ~~---~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
+. ....++++.+.+.|++++|.+.++ .+++..|++ ..+..++.++.+.|+.++|.++|++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33 455677777777888888888888 466677764 4466778888888888888888876543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.2e-11 Score=111.40 Aligned_cols=255 Identities=11% Similarity=0.088 Sum_probs=195.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhcC
Q 036661 331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDNVMVCNALIDMYSKCG 408 (615)
Q Consensus 331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 408 (615)
..++....+.+++.+-.+.....|.+-+...-+....+.....+++.|+.+|+++.+... -.+..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555556777777777777777666655555555566677788889988888887641 124566666653332222
Q ss_pred ChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 409 SIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 409 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
++.--....-.+.+-.+.|...+..-|.-.++.++|..+|++..+. .|.. ..|..+..-|....+...|.+-++++.
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 2222112222233334556667777888889999999999999986 4554 578888889999999999999999998
Q ss_pred HhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 488 KVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 488 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
.+.| |-..|-.|+++|.-.+...-|+-+|+++. .+| |+..|..|+.+|.+.++.++|++-|++++....-+..+
T Consensus 392 ---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 392 ---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred ---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 4444 56789999999999999999999999987 444 67799999999999999999999999999998888899
Q ss_pred hHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 565 YVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 565 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
+..||++|.+.++.++|.+++++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988876
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=4e-13 Score=128.48 Aligned_cols=277 Identities=13% Similarity=0.044 Sum_probs=220.6
Q ss_pred CHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHhhcccchhhHHHHHH
Q 036661 308 DIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE--VPDLVTVLSMISGCGQSGALELGKWFD 382 (615)
Q Consensus 308 ~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~ 382 (615)
...+|...|..++.. .......+..+|...+++++|.++|+.+.+... .-+..+|.+.+..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886322 233556778899999999999999999887531 12556777777654322 222222
Q ss_pred -HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036661 383 -NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKT---VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP 458 (615)
Q Consensus 383 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 458 (615)
+.+.+.. +.++.+|.++..+|.-+++.+.|++.|++..+-| ..+|..+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 2233333 6788999999999999999999999999988743 467888888888899999999999998864 55
Q ss_pred CH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHH
Q 036661 459 NR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTL 534 (615)
Q Consensus 459 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 534 (615)
.. ..|..+...|.++++++.|+-.|+++. .+.|.. .....++..+.+.|+.++|+++++++. .+.++......
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 44 578888889999999999999999998 667764 455668889999999999999999987 44456666677
Q ss_pred HHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 535 LCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 535 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
+..+...+++++|++.++++-++-|++..++..+|.+|.+.|+.+.|+.-|--+.+-.++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 778888999999999999999999999999999999999999999999999888776654
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.6e-13 Score=128.08 Aligned_cols=281 Identities=11% Similarity=-0.001 Sum_probs=222.4
Q ss_pred hhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC------CcccHHHHHHHHHhcCChhHHHHH
Q 036661 273 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDR------TRVSWTAMISGYAQKGDLDEALRL 346 (615)
Q Consensus 273 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~ 346 (615)
+..+|...|..+.+ .+.-+..+...+..+|...+++++|+++|+.+.+. +...|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 45667777777333 33444577888999999999999999999998332 556788887765442 23333
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh
Q 036661 347 FF-AMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTV 425 (615)
Q Consensus 347 ~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 425 (615)
+. ++.+. .+-.+.+|-.+..+|.-+++.+.|.+.|++.+..+ +....+|+.+..-+.....++.|...|+.....++
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 32 33333 35677899999999999999999999999998765 45788899999999999999999999999888666
Q ss_pred H---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHH
Q 036661 426 V---SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCM 502 (615)
Q Consensus 426 ~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 502 (615)
. +|-.+...|.+.++++.|+-.|+++.+.+ +-|.+....+...+.+.|+.++|+.+++++.. --+.++..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHH
Confidence 5 55667889999999999999999999864 34557788888899999999999999999983 223344444456
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 503 ADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
+..+...+++++|+..+++++ .-| +...+..++..|.+.|+.+.|+..|--+.+++|.-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 788889999999999999997 445 4557788889999999999999999999999997433
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-10 Score=105.73 Aligned_cols=244 Identities=11% Similarity=0.065 Sum_probs=107.5
Q ss_pred CchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCC------cccHHHHHHHHHhcCChhHH
Q 036661 270 CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRT------RVSWTAMISGYAQKGDLDEA 343 (615)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a 343 (615)
.....+.+.+-.......|++.+...-+....+.....|++.|+.+|+++.+.| ..+|+.++-. ++.+- .
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s--k 314 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS--K 314 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--H
Confidence 333444555555555555555554444444444445555555555555553322 2233333322 11111 1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 036661 344 LRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE- 422 (615)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 422 (615)
+..+.+-.-.--+-.+.|...+..-|+-.++.++|..+|+...+.+ +.....++.+.+-|....+...|.+-++...+
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 1111111100011222233333344444445555555555554444 33344444445555555555555555554433
Q ss_pred --CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHH
Q 036661 423 --KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS 500 (615)
Q Consensus 423 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 500 (615)
.|-..|-.|.++|.-.+.+.=|+-+|++..+.. +.|+..|..|..+|.+.++.++|++.|.+...- -..+...+.
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~ 470 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALV 470 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHH
Confidence 233445555555555555555555555555431 223345555555555555555555555555431 112233444
Q ss_pred HHHHHHHhcCChHHHHHHHHh
Q 036661 501 CMADLLGRKGKLKEALDFVQS 521 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~ 521 (615)
.|+++|.+.++.++|...+++
T Consensus 471 ~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 455555555555555554444
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.1e-11 Score=121.67 Aligned_cols=254 Identities=12% Similarity=-0.000 Sum_probs=162.7
Q ss_pred HHHHHhcCCHHHHHHHHhccC--CCCcc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchh
Q 036661 300 ISMYSKCGDIDSARFLFDGMC--DRTRV--SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL 375 (615)
Q Consensus 300 ~~~~~~~~~~~~a~~~~~~~~--~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 375 (615)
..+....|+.+.|.+.+.+.. .|+.. ........+...|+++.|...++.+.+.. +-+......+...+...|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 344455556666655555541 12221 22223555556666666666666666553 23444555566666666666
Q ss_pred hHHHHHHHHHHhcCCCCchHHHH-------HHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHH
Q 036661 376 ELGKWFDNYACSGGLKDNVMVCN-------ALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEAL 445 (615)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 445 (615)
+.+.+.+..+.+.+..+...... .++..-......+...+.++..+. .++..+..+...+...|++++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 66666666666654332222111 111111222234455556666654 47788888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHH--H-HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh-
Q 036661 446 DLFHQMMELDLRPNRVT--F-LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQS- 521 (615)
Q Consensus 446 ~~~~~~~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~- 521 (615)
+.+++..+. .||... + ..........++.+.+.+.+++..+...-.|+.....+++..+.+.|++++|.+.|++
T Consensus 284 ~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 284 EIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 999999986 455432 1 1122233445788889999988886433333225677899999999999999999994
Q ss_pred -CC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 522 -MP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 522 -~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
.. ..|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 678888888999999999999999999999865
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.6e-11 Score=110.81 Aligned_cols=402 Identities=10% Similarity=-0.053 Sum_probs=259.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCcCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCcc-chHHHHHHHH
Q 036661 123 WNAMIVGFAQMGFLEKVLCLFYNMRLVGIQAD-FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADV-SVCNTWISAY 200 (615)
Q Consensus 123 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 200 (615)
+-....-|-++|++++|++++.+.++ ..|| +..|.....+|...|+|+.+.+--...++. .|+- ..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 44455667788999999999999988 5688 667788888888999999988887777764 4543 3566667778
Q ss_pred HccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCCh--------hhHHHHHHHHHH-C--CCCCCHHhHHHHHHhcc
Q 036661 201 AKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKF--------DDSLNFYRHMIY-D--GFRPDVTTVVSLLSSCV 269 (615)
Q Consensus 201 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~--~~~p~~~~~~~ll~~~~ 269 (615)
-..|++++|+.=..- .++...+-...-. ..+....++-.. . .+.|+.....+.+..+.
T Consensus 194 E~lg~~~eal~D~tv-----------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTV-----------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred HhhccHHHHHHhhhH-----------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 888888887532211 1111111111111 112222222222 1 23455555444444432
Q ss_pred Cch------hhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc--------CCC--Ccc------cH
Q 036661 270 CPE------ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM--------CDR--TRV------SW 327 (615)
Q Consensus 270 ~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~--~~~------~~ 327 (615)
..- ..+.+...+....+.-..... ..+..|...+.+- ... |.. +.
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~-------------e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLE-------------EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCc-------------hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 110 001111111111100000000 0122222222111 111 111 12
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661 328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 407 (615)
Q Consensus 328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (615)
+....-+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++....|+...+.+ +-++.+|..-.+++.-.
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLL 407 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHH
Confidence 22222234578888999999998887543333 27777778899999999999999998876 66677788888888888
Q ss_pred CChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 036661 408 GSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN 484 (615)
Q Consensus 408 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 484 (615)
++++.|..-|++...- ++..|-.+..+..+.++++++...|++.+.. ++.-+..|+.....+..+++++.|.+.|+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999988773 4556777777777899999999999999987 34445799999999999999999999999
Q ss_pred HHHHhhCCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661 485 LMTKVYQVNPE---------LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYR 553 (615)
Q Consensus 485 ~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 553 (615)
..+. +.|+ +.+...++..-. .+++..|.++++++. ..|. ...+..+...-.+.|+.++|+++|++
T Consensus 487 ~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 487 KAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9883 3443 222222332222 389999999999987 5554 45888999999999999999999999
Q ss_pred HhccCC
Q 036661 554 LFELEP 559 (615)
Q Consensus 554 ~~~~~p 559 (615)
...+-.
T Consensus 563 sa~lAr 568 (606)
T KOG0547|consen 563 SAQLAR 568 (606)
T ss_pred HHHHHH
Confidence 987643
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2e-14 Score=134.11 Aligned_cols=227 Identities=15% Similarity=0.116 Sum_probs=105.8
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcC
Q 036661 364 SMISGCGQSGALELGKWFDNYACSGG-LKDNVMVCNALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNG 439 (615)
Q Consensus 364 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 439 (615)
.+...+...|++++|.+++....... .+.+...+..+.......++++.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45777889999999999996654443 3556666777788888899999999999998873 34566667766 6889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036661 440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFV 519 (615)
Q Consensus 440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 519 (615)
++++|.+++++..+. .+++..+..++..+...++++++..+++.+......+++...|..++..+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888765 466677788888999999999999999998765445667888999999999999999999999
Q ss_pred HhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 520 QSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 520 ~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+++. ..| +......++..+...|+.+++.++++...+..|+++..+..++.+|...|++++|+.++++..+..+
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9997 555 5678888999999999999999999999998899999999999999999999999999999987654
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1e-10 Score=103.35 Aligned_cols=447 Identities=12% Similarity=0.028 Sum_probs=208.2
Q ss_pred hcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHH
Q 036661 66 KLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCL 142 (615)
Q Consensus 66 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 142 (615)
...++..|..+++.....+-+....+-.=+...+.+.|++++|...+..+.+ ++...+-.|..++--.|.+.+|..+
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 3444555555544443332221111111123334455555555555554432 2333444444444444555555554
Q ss_pred HHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCC
Q 036661 143 FYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRT 222 (615)
Q Consensus 143 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 222 (615)
-.... -++..-..++...-+.++-+......+.+.+. ..-..+|.......-.+.+|.+++.++....|.
T Consensus 114 ~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 114 AEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 33321 12222333344444455555444444444321 123334444444455677888888887766666
Q ss_pred cchHHHHH-HHHhcCCChhhHHHHHHHHHHCCCCCCHHh-HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHH
Q 036661 223 VVSWNSII-GGCTYGDKFDDSLNFYRHMIYDGFRPDVTT-VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI 300 (615)
Q Consensus 223 ~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 300 (615)
-...|..+ -+|.+..-++-+.++++-.++. .||+.. .+.......+.=+...|++-.+.+.+.+-.. -..+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~ 256 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFI 256 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhH
Confidence 66666554 3455666667677777666553 144322 2222111122212222222223322222100 0011
Q ss_pred HHHHhc-----CCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchh
Q 036661 301 SMYSKC-----GDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL 375 (615)
Q Consensus 301 ~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 375 (615)
..+++. ..-+.|++++-.+.+.-+.+-..++--|.++++..+|..+.+++.- ..|-......+..+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a------- 327 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA------- 327 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH-------
Confidence 111111 1123333333222221122222233334444444444444443321 11111111111111
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661 376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KTVVSWTTMIAGCALNGEFVEALDLFHQ 450 (615)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 450 (615)
.+.+-......+.-|...|+-.-+ ..+.-..++...+.-..++++.+.++..
T Consensus 328 -----------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS 384 (557)
T KOG3785|consen 328 -----------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS 384 (557)
T ss_pred -----------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111123334444443322 1223344555566666677777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCCCCChh
Q 036661 451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHY-SCMADLLGRKGKLKEALDFVQSMPIKSDAG 529 (615)
Q Consensus 451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 529 (615)
...- +..|......+..+++..|.+.+|.++|-++... .+ .+..+| ..|+++|.+.|+++-|++++-++..+.+..
T Consensus 385 i~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~f 461 (557)
T KOG3785|consen 385 IESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERF 461 (557)
T ss_pred HHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHH
Confidence 6664 2333333334677778888888888888777621 22 223333 346688888888888888887776333333
Q ss_pred -hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661 530 -IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY 565 (615)
Q Consensus 530 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 565 (615)
.+..+.+-|.+.+.+--|-+.|..+..++|. |+-|
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW 497 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence 3344456777888888888888888777776 4444
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=2.9e-12 Score=117.00 Aligned_cols=199 Identities=12% Similarity=0.023 Sum_probs=167.2
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661 392 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ 468 (615)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 468 (615)
.....+..+...+...|++++|.+.+++... .+...+..+...+...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788889999999999999987654 346688888999999999999999999999874 445567888888
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhH
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 546 (615)
.+...|++++|...++++......+.....+..++.++...|++++|...+++.. ..| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998542223344567778999999999999999999886 334 45677888899999999999
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 547 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
|...++++++..|.++..+..++.++...|++++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998988888999999999999999999998887654
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-10 Score=109.69 Aligned_cols=261 Identities=14% Similarity=0.052 Sum_probs=209.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 036661 327 WTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK 406 (615)
Q Consensus 327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (615)
......-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+.+.- |..+.+|-++.--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 3344455667889999999999988763 5666666666667777777766666666666543 6778889999999999
Q ss_pred cCChHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661 407 CGSIGDARELFYALPEKT---VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF 483 (615)
Q Consensus 407 ~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 483 (615)
.|+..+|++.|.+...-| ...|-.+..+|+-.|..+.|+..+...-+. ++-....+..+..-|.+.++...|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999876633 358999999999999999999999888774 2222233445566788899999999999
Q ss_pred HHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCC----ChhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661 484 NLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-----IKS----DAGIWGTLLCACKIHRNIEIGEYVAYR 553 (615)
Q Consensus 484 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 553 (615)
..+. ++.|+ +.+.+.++-.....+.+.+|..+|+... ..+ -..++..|+.+|++.+.+++|+..+++
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9988 55554 5677778888888899999999998765 111 124678899999999999999999999
Q ss_pred HhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 554 LFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 554 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
++.+.|.++.++.++|-+|...|+.+.|++.|.+.+-..+
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998876443
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=9.2e-11 Score=105.80 Aligned_cols=285 Identities=14% Similarity=0.079 Sum_probs=169.5
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036661 236 GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFL 315 (615)
Q Consensus 236 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 315 (615)
.|++.+|.+++.+-.+.+-.| ...|..-..+.-..|+.+.+.+++.+..+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 566666666666655544322 2334444455556666666666666666553344555556666666777777777666
Q ss_pred Hhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC
Q 036661 316 FDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD 392 (615)
Q Consensus 316 ~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 392 (615)
++++ .+.++........+|.+.|++.....++.++.+.|.-.+...- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 5554 4445566667777777777777777777777776654333210 00
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA 469 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 469 (615)
-..+++.+++-....+..+.-...++..+. .++..-..++.-+.+.|+.++|.++.++..+++..|+ ....-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 112344444444444444455555655554 3566666667777777777777777777777665555 112223
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHH
Q 036661 470 CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
+.+-++...-++..+...+.++..| ..+.+|+..|.+.+.+.+|.+.|+... ..|+...+..+..++.+.|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4556666666666666665444333 456666666666666666666666554 5666666666666666666666666
Q ss_pred HHHHHHh
Q 036661 549 YVAYRLF 555 (615)
Q Consensus 549 ~~~~~~~ 555 (615)
+..++++
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 6666655
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.3e-09 Score=98.58 Aligned_cols=309 Identities=11% Similarity=-0.002 Sum_probs=223.0
Q ss_pred CCCCHHhHHHHHHhcc--CchhhhhhhHHHHHHHH-hcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc---cH
Q 036661 254 FRPDVTTVVSLLSSCV--CPEALVQGRLVHSHGIH-YGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRV---SW 327 (615)
Q Consensus 254 ~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 327 (615)
+.|...+....+.+++ ..++-..+.+.+-.+.. .-++.+......+...+...|+.++|+..|++..--|+. ..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 3444445444444433 23333334333333333 346778889999999999999999999999987443333 23
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661 328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 407 (615)
Q Consensus 328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (615)
......+.+.|+.+....+...+.... .-....|-.-.......++++.|..+-+..++.+ +.+...+-.-..++...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 333445567888888888887776542 1222222223333456678899999888888765 44555565556778889
Q ss_pred CChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhhc-cCchHHHHHH
Q 036661 408 GSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVL-QACTH-AGFLEKGWGY 482 (615)
Q Consensus 408 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~~~~~~a~~~ 482 (615)
++++.|.-.|+.... -+...|..|+.+|...|.+.+|...-+..... ++.+..+...+. ..|.. ..--++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999999999987554 36789999999999999999999988887775 455666666553 34433 3345788888
Q ss_pred HHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 483 FNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 483 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
+++.. .+.|+ ......++..+...|+.++++.++++.. ..||....+.|+..+...+.+.+|...|..+++++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 88876 45666 3566778899999999999999999987 8899999999999999999999999999999999999
Q ss_pred CCCChHhH
Q 036661 561 SAAPYVEM 568 (615)
Q Consensus 561 ~~~~~~~l 568 (615)
+..+...+
T Consensus 504 ~~~sl~Gl 511 (564)
T KOG1174|consen 504 SKRTLRGL 511 (564)
T ss_pred chHHHHHH
Confidence 76655554
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=2.7e-10 Score=111.18 Aligned_cols=411 Identities=12% Similarity=0.036 Sum_probs=269.2
Q ss_pred HHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHh
Q 036661 182 IHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTT 260 (615)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 260 (615)
....+..|..+|..+.-+....|+++.+-+.|++.... ......|+.+...+...|.-..|+.+++.-......|+..+
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 33445667888999999999999999999999987643 44567899999999999999999999988766543354443
Q ss_pred -HHHHHHhcc-CchhhhhhhHHHHHHHHh--cC--CCChhHHHHHHHHHHhcC-----------CHHHHHHHHhcc---C
Q 036661 261 -VVSLLSSCV-CPEALVQGRLVHSHGIHY--GF--DLDVSVINTLISMYSKCG-----------DIDSARFLFDGM---C 320 (615)
Q Consensus 261 -~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~---~ 320 (615)
+...-+.|. +.+..+++..+-..+.+. +. ...+..+..+.-+|...- ...++...+++. .
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 333334444 467777777776666652 11 223344444444444321 123445555555 2
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCchHHHHH
Q 036661 321 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVMVCNA 399 (615)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 399 (615)
..|+...-.+.--|+-.++.+.|+...++..+.+-.-+...+..+.-.+...+++..|+.+.+.... .|. +-.....
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchh
Confidence 2344444445556777889999999999998886677888888888888889999999998887665 221 1110111
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--------------------------------CChHHHHHHHHHHHhc---CChHHH
Q 036661 400 LIDMYSKCGSIGDARELFYALPE--------------------------------KTVVSWTTMIAGCALN---GEFVEA 444 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~---~~~~~a 444 (615)
-+..-..-++.+++......+.. ..+.++..+..-.... -..+..
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 11111122333333322221110 0111222221111100 001111
Q ss_pred HHHHHHHHHcCCCC--C------HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661 445 LDLFHQMMELDLRP--N------RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL 516 (615)
Q Consensus 445 ~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 516 (615)
+...-+.| + ...|......+.+.+..++|.-.+.++.+ ..+-....|...+..+...|+.++|.
T Consensus 633 ------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 633 ------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 11111122 2 12344556677888899999988888874 33445567888889999999999999
Q ss_pred HHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHH--HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 517 DFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEY--VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 517 ~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
+.|.... ..|+ ..+...++..+.+.|+..-|.. ++..+++++|.++.+|..+|.++...|+.++|.+.|+-..+-.
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999887 5564 5688889999999998888888 9999999999999999999999999999999999999887754
Q ss_pred cccCCceeEEE
Q 036661 593 VKKFPGQSLVH 603 (615)
Q Consensus 593 ~~~~~~~~~~~ 603 (615)
. ..|-.+|.-
T Consensus 785 ~-S~PV~pFs~ 794 (799)
T KOG4162|consen 785 E-SNPVLPFSN 794 (799)
T ss_pred c-CCCcccccc
Confidence 3 445555543
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=8.6e-11 Score=102.67 Aligned_cols=189 Identities=13% Similarity=0.128 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-Ccc------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhc
Q 036661 298 TLISMYSKCGDIDSARFLFDGMCDR-TRV------SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCG 370 (615)
Q Consensus 298 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 370 (615)
+|.+.|.+.|..|.|+++-+.+.+. |.. ....|..-|...|-++.|+.+|..+.+.| .--......|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 3444444455555555554444222 211 12234444555555566666665555433 122233444555555
Q ss_pred ccchhhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCChHH
Q 036661 371 QSGALELGKWFDNYACSGGLKDN----VMVCNALIDMYSKCGSIGDARELFYALPEKT---VVSWTTMIAGCALNGEFVE 443 (615)
Q Consensus 371 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 443 (615)
...++++|.++-+.+.+.+-.+. ...|.-|...+....+++.|..++.+..+.| +..--.+.+.+...|+++.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 55555555555555444332221 1223334444444455555555555444422 2223334445555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 444 ALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 444 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
|++.|+...+.+..--+.+...|..+|...|+.++....+.++.
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555322223345555555555555555555555555
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=6.8e-11 Score=103.29 Aligned_cols=290 Identities=13% Similarity=0.105 Sum_probs=220.5
Q ss_pred cCCHHHHHHHHhccCCCCccc---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHhhcccchhhHHH
Q 036661 306 CGDIDSARFLFDGMCDRTRVS---WTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL---VTVLSMISGCGQSGALELGK 379 (615)
Q Consensus 306 ~~~~~~a~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~ 379 (615)
.++.++|.+.|-+|.+.|..+ .-+|...|.+.|..+.|+++-+.+.++.--+.. .....|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 468899999999986665554 457888999999999999999998875322222 23344556688899999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh--------HHHHHHHHHHHhcCChHHHHHHHHHH
Q 036661 380 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTV--------VSWTTMIAGCALNGEFVEALDLFHQM 451 (615)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~ 451 (615)
.+|..+.+.+ ..-......|+..|-...+|++|+++-+++..-+. ..|.-|...+....+.+.|...+++.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998855 44556678899999999999999998876655222 24555666677788999999999999
Q ss_pred HHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh
Q 036661 452 MELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG 529 (615)
Q Consensus 452 ~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 529 (615)
.+. .|+. ..-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++. ..+...
T Consensus 207 lqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 207 LQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred Hhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 986 4554 34455677889999999999999999864 322235678889999999999999999998876 555555
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH-c--cCChHHHHHHHHHHHhcCcccCCcee
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA-L--GGRWDGVANLRTMMKRNQVKKFPGQS 600 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~--~g~~~~A~~~~~~~~~~~~~~~~~~~ 600 (615)
....+...-....-.+.|...+.+-+...|.- .....+.+... . -|.+.+-+-+++.|..+.++..|.+.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 55556665556667788888888888889984 44444444433 3 35588889999999999888877543
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=2.8e-10 Score=102.71 Aligned_cols=285 Identities=13% Similarity=0.021 Sum_probs=158.8
Q ss_pred cCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHH
Q 036661 133 MGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELV 212 (615)
Q Consensus 133 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 212 (615)
.|+|.+|.+++.+-.+.+-.| ...|..-.++.-+.|+.+.+-.++.+..+..-.++..+..+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777755544222 3334555556667777777777777777654455556666777777777887777777
Q ss_pred HHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCC
Q 036661 213 FRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDL 291 (615)
Q Consensus 213 ~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 291 (615)
..++.+. +...........+|.+.|++.....++..|.+.|+-.+...- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 7766655 445666777778888888888888888888777754433210 00
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 036661 292 DVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISG 368 (615)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 368 (615)
...++..+++-....+..+.-...++..+ +.++..-..++.-+.+.|+.++|.++..+..+.+..|+..+ .-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 11234445554444455555455555552 22455556666667777777777777777776665555222 122
Q ss_pred hcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHH
Q 036661 369 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALD 446 (615)
Q Consensus 369 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 446 (615)
+.+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+...+ ++..+|+.+..++.+.|++.+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 334444444444433333321 22224444444444444444444444443322 344444444444444444444444
Q ss_pred HHHHH
Q 036661 447 LFHQM 451 (615)
Q Consensus 447 ~~~~~ 451 (615)
..++.
T Consensus 383 ~r~e~ 387 (400)
T COG3071 383 VRREA 387 (400)
T ss_pred HHHHH
Confidence 44433
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=2.1e-08 Score=96.13 Aligned_cols=493 Identities=12% Similarity=0.077 Sum_probs=278.2
Q ss_pred hHHHHHHHHHhhcCCChhHHHHhhccCCC-----CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHH
Q 036661 89 IFVQTTMVDMYAKCDRLDCAYKLFDKMPD-----RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQ 163 (615)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 163 (615)
+..|-..+.....+|++......|+.... .....|...+....+.|-++-++.+++...+. .| ..-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHH
Confidence 34555556666666666666666655432 13345666666666666666666666666542 22 22444455
Q ss_pred HHHhcCChhHHHHHHHHHHHh------cCCCccchHHHHHHHHHccCCH---HHHHHHHHhcccCCCC--cchHHHHHHH
Q 036661 164 AAIHAKHLSLLKSVHSFGIHI------GVDADVSVCNTWISAYAKCNDL---KMAELVFRGIEEGLRT--VVSWNSIIGG 232 (615)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~--~~~~~~li~~ 232 (615)
.++..+++++|.+.+...+.. ..+.+...|..+.+..++.-+. -....+++......+| ...|..|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 555666666666665555422 1123344555555444443221 1233444444433333 2345666666
Q ss_pred HhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCch----------------------hhhhhhHHHHHHHHhcC-
Q 036661 233 CTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPE----------------------ALVQGRLVHSHGIHYGF- 289 (615)
Q Consensus 233 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~~~- 289 (615)
|.+.|.+++|.++|++....- ....-|+.+..+|+.-. +++.....++.+...+.
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 666666666666666555432 22222333333322111 11222223333322210
Q ss_pred ----------CCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CC------CcccHHHHHHHHHhcCChhHHHHHHHHH
Q 036661 290 ----------DLDVSVINTLISMYSKCGDIDSARFLFDGMC---DR------TRVSWTAMISGYAQKGDLDEALRLFFAM 350 (615)
Q Consensus 290 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 350 (615)
+.+...+..-+ -+..|+..+-...+.+.. .| -...|..+.+.|-..|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 11112222111 122345555555555541 11 1236888889999999999999999988
Q ss_pred HHCCCCCC---HHHHHHHHHhhcccchhhHHHHHHHHHHhcC-----------CCC------chHHHHHHHHHHHhcCCh
Q 036661 351 EAAGEVPD---LVTVLSMISGCGQSGALELGKWFDNYACSGG-----------LKD------NVMVCNALIDMYSKCGSI 410 (615)
Q Consensus 351 ~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~~ 410 (615)
..-..+.- ..+|..-...=.+..+++.|.++.+...... .++ +..+|..+++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 76543221 1233333344445567788888777765321 111 234455566666677888
Q ss_pred HHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhc---cCchHHHHHHH
Q 036661 411 GDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTH---AGFLEKGWGYF 483 (615)
Q Consensus 411 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~~~~~~a~~~~ 483 (615)
+....+++.+.+- ++...-.....+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+ ...++.|..+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8888888887762 3332222233334556688899999887776445666 477776665543 33689999999
Q ss_pred HHHHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--hhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661 484 NLMTKVYQVNPEL--NHYSCMADLLGRKGKLKEALDFVQSMP--IKSD--AGIWGTLLCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 484 ~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
++..+ +.+|.. ..|...+..=.+.|-...|+.+++++. .++. ...|+.++.-....=-+..-..+|+++++.
T Consensus 574 EqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99996 666653 234444444456788999999999986 3332 234555554333333455667899999999
Q ss_pred CCCCC--CChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 558 EPHSA--APYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 558 ~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
-|++. ......++.-.+.|..+.|+.+|..-.+-
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 88753 33445688888999999999999766553
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.9e-09 Score=100.90 Aligned_cols=436 Identities=13% Similarity=0.065 Sum_probs=237.9
Q ss_pred HHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHH
Q 036661 130 FAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMA 209 (615)
Q Consensus 130 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 209 (615)
+...|++++|.+....+...+ +-|...+..=+-++.+.+.++.|..+.+.-.. ...+...+..-.-+..+.+..++|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHH
Confidence 334455555555555555432 22233344444444555555555433221110 011111111222334457777777
Q ss_pred HHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHhccCchhhhhhhHHHHHHHHhc
Q 036661 210 ELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVT-TVVSLLSSCVCPEALVQGRLVHSHGIHYG 288 (615)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (615)
...++.+. ..+..+...-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-.. ... ..+....
T Consensus 99 lk~~~~~~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~ 168 (652)
T KOG2376|consen 99 LKTLKGLD--RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVP 168 (652)
T ss_pred HHHHhccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhcc
Confidence 77777444 3333344555566777888888888888887665422111 11111111000 000 0111111
Q ss_pred CCCChhHHH---HHHHHHHhcCCHHHHHHHHhcc--------CCCCcc----------cHHHHHHHHHhcCChhHHHHHH
Q 036661 289 FDLDVSVIN---TLISMYSKCGDIDSARFLFDGM--------CDRTRV----------SWTAMISGYAQKGDLDEALRLF 347 (615)
Q Consensus 289 ~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~ 347 (615)
..| ..+|. .....+...|++.+|+++++.. ...|.. .-..+...+...|+..+|.+++
T Consensus 169 ~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 169 EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 122 22232 2344556778888888888766 221111 2234555677899999999999
Q ss_pred HHHHHCCCCCCHHH----HHHHHHhhcccchhh-HHHHHHHHHH-----------hcCCCCchHHHHHHHHHHHhcCChH
Q 036661 348 FAMEAAGEVPDLVT----VLSMISGCGQSGALE-LGKWFDNYAC-----------SGGLKDNVMVCNALIDMYSKCGSIG 411 (615)
Q Consensus 348 ~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~-~a~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (615)
...+... ++|... .+.++..-....-.+ .....++... ...-.-....-+.++..| .+..+
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 9998875 444432 223332211111111 0111111110 000011111122333333 35566
Q ss_pred HHHHHHhcCCCCC-hHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHH--
Q 036661 412 DARELFYALPEKT-VVSWTTMIAGC--ALNGEFVEALDLFHQMMELDLRPNR--VTFLAVLQACTHAGFLEKGWGYFN-- 484 (615)
Q Consensus 412 ~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~-- 484 (615)
.+.++...++... ...+..++..+ ++...+..+.+++...-+. .|.. ......+.....+|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777776643 23444444433 2333578888888888775 4443 455566777889999999999998
Q ss_pred ------HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCChh----hHHHHHHHHHHhCChhHHHH
Q 036661 485 ------LMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDAG----IWGTLLCACKIHRNIEIGEY 549 (615)
Q Consensus 485 ------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~l~~~~~~~~~~~~A~~ 549 (615)
.+. .+.-.+.+...+...+.+.++.+.|..++.+.. ..+... .+..++..-.++|+.++|..
T Consensus 403 ~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 403 LESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred hhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 333 223334456668888999998888888777664 222222 33444455567899999999
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 550 VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 550 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
+++++++.+|++......++.+|.+. +.+.|..+-+++
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999999999765 566666665444
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=9.7e-08 Score=91.88 Aligned_cols=553 Identities=11% Similarity=0.055 Sum_probs=305.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhH
Q 036661 28 EAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDC 107 (615)
Q Consensus 28 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 107 (615)
.+...|+.++|.+....-.+.++. +...|+.+.-.+....++.+|...|..+.+.+ +.|...+.-+.-.-++.|+++.
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhh
Confidence 455566677777776666665443 55666666666666677777777777777665 4455555544444455555555
Q ss_pred HHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcC-CcCChhHHHHHHHH------HHhcCChhHHHHH
Q 036661 108 AYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVG-IQADFVTVMGLTQA------AIHAKHLSLLKSV 177 (615)
Q Consensus 108 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~------~~~~~~~~~a~~~ 177 (615)
....-....+ .....|..+..+..-.|+...|..++++..+.. -.|+...|...... ....|..+.|.+.
T Consensus 128 ~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 128 YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 4443333332 245567777777777888888888888877654 24565555433332 2344555666555
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHh-cCCChhhHH-HHHHHHHHCCCC
Q 036661 178 HSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCT-YGDKFDDSL-NFYRHMIYDGFR 255 (615)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~-~~~~~m~~~~~~ 255 (615)
+..-... +......-.+-...+.+.+++++|..++..+....||...|+..+..+. +-.+.-+++ .+|....+. .
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y- 284 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y- 284 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-
Confidence 4443321 1111222334456677788888888888888777776666665554333 222222333 444444332 1
Q ss_pred CCHHhHHH-HHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHH----HHHHHhcc-----------
Q 036661 256 PDVTTVVS-LLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDS----ARFLFDGM----------- 319 (615)
Q Consensus 256 p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~----------- 319 (615)
|....... -+.......-.+....++....+.|+++- +..+...|-.....+- +..+...+
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 11110000 01111112223334555666666665542 3333333322111111 11111111
Q ss_pred ---CCCCcc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCc
Q 036661 320 ---CDRTRV--SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV-TVLSMISGCGQSGALELGKWFDNYACSGGLKDN 393 (615)
Q Consensus 320 ---~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 393 (615)
.+|... ++..++..+-+.|+++.|...++..... .|+.. -|..-.+.+...|+++.|..++++..+.+ .+|
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aD 438 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TAD 438 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chh
Confidence 122333 3445677888899999999999988765 56554 45555677888999999999999988876 566
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----------HHHHHH--HHHHHhcCChHHHHHHHHHHHHc--CC---
Q 036661 394 VMVCNALIDMYSKCGSIGDARELFYALPEKTV----------VSWTTM--IAGCALNGEFVEALDLFHQMMEL--DL--- 456 (615)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~--~~--- 456 (615)
..+-.--+.-..+.++.++|.++.......+. -.|-.+ ..+|.+.|++..|++-|..+... .+
T Consensus 439 R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~d 518 (700)
T KOG1156|consen 439 RAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSED 518 (700)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 66655667777888999999998887776321 134333 35677788887777666555431 01
Q ss_pred CCCHHHH----------HHHHHHhhccC---c----hHHHHHHHHHHHHhhCC-CCChhHHHHHH----HHHHhcC-ChH
Q 036661 457 RPNRVTF----------LAVLQACTHAG---F----LEKGWGYFNLMTKVYQV-NPELNHYSCMA----DLLGRKG-KLK 513 (615)
Q Consensus 457 ~p~~~~~----------~~l~~~~~~~~---~----~~~a~~~~~~~~~~~~~-~~~~~~~~~l~----~~~~~~g-~~~ 513 (615)
+-|-.|| .-|+.-.-... . ...|++++=+|...... .+.......+. ....++. +-.
T Consensus 519 qfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~k 598 (700)
T KOG1156|consen 519 QFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKK 598 (700)
T ss_pred hhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHH
Confidence 2233333 22222111111 1 22445555555532100 01111111111 1111111 111
Q ss_pred HHHHHHHhC--------C------CCCChhhHHHHHHHHHHhC-ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCCh
Q 036661 514 EALDFVQSM--------P------IKSDAGIWGTLLCACKIHR-NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRW 578 (615)
Q Consensus 514 ~A~~~~~~~--------~------~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 578 (615)
+|.+.-+.+ . ..||.. .++..+.+.. =.++|...+.......+++...|..-..+|.+.|++
T Consensus 599 k~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~ 675 (700)
T KOG1156|consen 599 KAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKF 675 (700)
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHH
Confidence 121111111 1 223333 3333444433 347799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcc
Q 036661 579 DGVANLRTMMKRNQVK 594 (615)
Q Consensus 579 ~~A~~~~~~~~~~~~~ 594 (615)
.-|.+.++++......
T Consensus 676 ~l~~~~~~~~~~~~~~ 691 (700)
T KOG1156|consen 676 LLALACLNNAEGIHGT 691 (700)
T ss_pred HHHHHHHHhhhhhcCC
Confidence 9999999888765543
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=1.4e-10 Score=112.60 Aligned_cols=232 Identities=18% Similarity=0.207 Sum_probs=172.9
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHhc-----C-CCCch-HHHHHHHHHHHhcCChHHHHHHHhcCCC-------C-
Q 036661 359 LVTVLSMISGCGQSGALELGKWFDNYACSG-----G-LKDNV-MVCNALIDMYSKCGSIGDARELFYALPE-------K- 423 (615)
Q Consensus 359 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~- 423 (615)
..+...+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666777888888888888888776653 2 12222 2334577788889999988888887654 1
Q ss_pred C---hHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhC--
Q 036661 424 T---VVSWTTMIAGCALNGEFVEALDLFHQMME-----LDL-RPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ-- 491 (615)
Q Consensus 424 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 491 (615)
+ ..+++.|...|...|++++|...+++..+ .|. .|.. ..++.+...|...+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 24778888899999999998888877654 122 2222 2466677788999999999999998775433
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661 492 VNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP---------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 492 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
+.++ ..++..|+..|...|++++|.++++++. ..+. ...++.+...|.+.+++.+|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578899999999999999999999875 1222 346778889998999999999999888653
Q ss_pred ----CCCC---CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 558 ----EPHS---AAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 558 ----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.|++ ..+|.+|+.+|.++|++++|.++.+++..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444 45788999999999999999999988863
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=7.1e-09 Score=102.21 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=41.5
Q ss_pred ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661 543 NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTM 587 (615)
Q Consensus 543 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 587 (615)
=.++|.++++-+.+..|++..+|..-..+|.|.|++--|++.+.+
T Consensus 472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 458899999999999999999999999999999999999988765
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=8.1e-11 Score=98.09 Aligned_cols=162 Identities=13% Similarity=0.150 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMAD 504 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 504 (615)
+...|.-.|.+.|++..|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|++..+ +.|+ ..+.|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 4566778899999999999999999987 5655 5888888899999999999999999884 3454 578888999
Q ss_pred HHHhcCChHHHHHHHHhCCCCC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHH
Q 036661 505 LLGRKGKLKEALDFVQSMPIKS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDG 580 (615)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 580 (615)
.+|..|++++|...|++....| ...+|..++.+..+.|+.+.|...++++++.+|+.+.....++..+...|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999999987444 245888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 036661 581 VANLRTMMKRNQV 593 (615)
Q Consensus 581 A~~~~~~~~~~~~ 593 (615)
|..++++....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887776
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=2.3e-10 Score=116.94 Aligned_cols=245 Identities=13% Similarity=0.004 Sum_probs=179.3
Q ss_pred ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhc---------ccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 036661 339 DLDEALRLFFAMEAAGEVPD-LVTVLSMISGCG---------QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 408 (615)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (615)
+.++|...|++..+. .|+ ...+..+..++. ..++.+.|...++...+.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356888888888765 343 334444333322 3456789999999888876 567778888888899999
Q ss_pred ChHHHHHHHhcCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHH
Q 036661 409 SIGDARELFYALPE--K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFN 484 (615)
Q Consensus 409 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 484 (615)
++++|...+++..+ | +...+..+..++...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998765 3 4568888999999999999999999999987 4543 233444555667899999999999
Q ss_pred HHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh-hHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 485 LMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 485 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
++... .+|+ ...+..++.++...|++++|...++++. ..|+.. .+..+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98753 2343 4456778899999999999999999876 445443 4445555666666 58888888877654333
Q ss_pred CCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 562 AAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 562 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+........+|.-.|+.+.+... +++.+.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 33344477888889998888777 88877654
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2.9e-11 Score=105.56 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661 328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 407 (615)
Q Consensus 328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (615)
+.+.++|.+.|-+.+|.+.++.-... .|-+.||..|-+.|.+..++..|..++.+-.+.- +.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45566666666666666666665554 3444455555555555555555555544443321 22333333334444444
Q ss_pred CChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 036661 408 GSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN 484 (615)
Q Consensus 408 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 484 (615)
++.++|.++++...+ .++.....+...|.-.++++-|+.+++++.+.|+ -++..|+.+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 444444444444333 2233333334444444555555555555555542 334444444444444455555544444
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 485 LMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 485 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
+.... .-.|+ ....+|..+.......||+..|.+.|+-++.-+|++.+.
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 44421 11111 113456666666666777777777777777777777777
Q ss_pred hHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 565 YVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+++|+-+-.+.|+.++|..+++...+..+
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 88887777788888888877777766443
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=1.4e-10 Score=108.25 Aligned_cols=189 Identities=20% Similarity=0.147 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhh
Q 036661 396 VCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAVLQACT 471 (615)
Q Consensus 396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 471 (615)
.+..+...|...|+.+.|...|++..+ .++..|+.+...+...|++++|...|++..+. .|+ ...+..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 344455555556666666655555443 23455666666666666666666666666654 333 345555555555
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHH
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEY 549 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~ 549 (615)
..|++++|.+.+++..+. .|+..........+...++.++|.+.+++.. ..|+. |. ........|+...+ +
T Consensus 144 ~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-H
Confidence 666666666666665532 3332211111122334455666666664432 12221 11 11112223333222 1
Q ss_pred HHHHHh-------ccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 550 VAYRLF-------ELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 550 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.++.+. ++.|+.+.+|..+|.+|...|++++|+..|++..+.++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 222222 33344455666666666666666666666666655544
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=6.4e-08 Score=95.03 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHH
Q 036661 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMAD 504 (615)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 504 (615)
..|......+.+.++.++|...+.+..... +-....|......+...|...+|.+.|.... .+.|+ +....+++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 357777788889999999998888888752 3344677777788888999999999998887 55666 567888999
Q ss_pred HHHhcCChHHHHH--HHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 505 LLGRKGKLKEALD--FVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 505 ~~~~~g~~~~A~~--~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
++.+.|+..-|.. ++..+. .+.+...|..++..+.+.|+.++|...|+.++++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998888877 888887 4446789999999999999999999999999999988764
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=4.8e-11 Score=104.21 Aligned_cols=192 Identities=11% Similarity=0.083 Sum_probs=160.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccC
Q 036661 398 NALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVT-FLAVLQACTHAG 474 (615)
Q Consensus 398 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~ 474 (615)
+.+..+|.+.|.+.+|.+.++.-.+ +-+.||..|-++|.+..+++.|+.++.+..+. .|-.+| .....+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5678889999999999999987655 77889999999999999999999999999886 555554 455677888999
Q ss_pred chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661 475 FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAY 552 (615)
Q Consensus 475 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 552 (615)
+.++|.++++...+. .+.+++...+++..|.-.++++-|+.+++++. .--++..+..+.-+|.-.++++-++..++
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999999863 34456667778888888999999999999986 33456688889999999999999999999
Q ss_pred HHhccC--CC-CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 553 RLFELE--PH-SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 553 ~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+++..- |+ -+.+|++++.+....|+..-|.+.|+..+..+.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 998743 33 467999999999999999999999988776543
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=5e-08 Score=86.70 Aligned_cols=216 Identities=12% Similarity=-0.022 Sum_probs=137.2
Q ss_pred hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCC-------hHHHHH
Q 036661 374 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGE-------FVEALD 446 (615)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~ 446 (615)
+-+.|.+++-.+.+. -|.. -..|+-.|.+.+++.+|..+.+++...++.-|-.-...++..|+ ..-|.+
T Consensus 269 ngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 345555555544432 2222 23455568899999999999999877666544433333343333 344555
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 036661 447 LFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-- 523 (615)
Q Consensus 447 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 523 (615)
.|+-.-+.+..-|. .--.++..++.-..++++.+-++..+..- -...|...+ .++.+++..|++.+|.++|-.+.
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 55554444433332 22344455555566789999999888742 333343333 48899999999999999998886
Q ss_pred CCCChhhH-HHHHHHHHHhCChhHHHHHHHHHhccCCCCC-CChHhHHHHHHccCChHHHHHHHHHHHhcCcccCC
Q 036661 524 IKSDAGIW-GTLLCACKIHRNIEIGEYVAYRLFELEPHSA-APYVEMANIYALGGRWDGVANLRTMMKRNQVKKFP 597 (615)
Q Consensus 524 ~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 597 (615)
.-.+..+| ..+..+|.+.+..+.|..++-+.- .|.+. ..+..+++.+.+.+.+==|.+.|+.+....+.++.
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 11233344 556678888999998877764432 23322 23345688899999999999999998877765544
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=2.2e-10 Score=117.08 Aligned_cols=212 Identities=12% Similarity=0.021 Sum_probs=167.5
Q ss_pred chhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH---------hcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCC
Q 036661 373 GALELGKWFDNYACSGGLKDNVMVCNALIDMYS---------KCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGE 440 (615)
Q Consensus 373 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 440 (615)
++.+.|...+++..+.. +.+...+..+..++. ..+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 46688999999988765 444556666655544 23457899999988776 366788888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHH
Q 036661 441 FVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDF 518 (615)
Q Consensus 441 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 518 (615)
+++|...++++.+. .|+ ...+..+..++...|++++|...++++.+ ..|+. ..+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999997 454 56788888999999999999999999984 35553 2333445567778999999999
Q ss_pred HHhCC--CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 519 VQSMP--IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 519 ~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
++++. .+|+ ...+..+..++...|+.++|...++++....|++......++..|...| ++|...++++.+..
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 99875 3454 4456777888889999999999999999999988888889999999888 48888888876643
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=8.8e-09 Score=99.93 Aligned_cols=193 Identities=11% Similarity=0.126 Sum_probs=103.3
Q ss_pred HHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 036661 366 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEAL 445 (615)
Q Consensus 366 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 445 (615)
+.+.....++.+|..+++.+..... ...-|..+.+.|...|+++.|.++|.+.-. ++-.+..|.+.|+++.|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~-----~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL-----FKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch-----hHHHHHHHhccccHHHHH
Confidence 3444455566666666666655432 122344556666666666666666654432 444556666667776666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 036661 446 DLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIK 525 (615)
Q Consensus 446 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (615)
++-.+.. |.......|..-..-+.+.|++.+|.++|-.+. .|+. .+..|-+.|..++.+++..+....
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 6554443 112222344444445556666666666554433 2432 345666666666666666655422
Q ss_pred CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661 526 SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR 585 (615)
Q Consensus 526 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 585 (615)
.-..+...+..-+-..|+...|+..|-++ .-|..-.+.|...+.|++|-.+-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 12234445555555666666666655443 22444455566666666555444
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=3.1e-08 Score=95.20 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=84.2
Q ss_pred CCChhHHH--HHHHHHHhcCChHHHHHHHHhCC-CCCCh-hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661 493 NPELNHYS--CMADLLGRKGKLKEALDFVQSMP-IKSDA-GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 493 ~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 568 (615)
+|+...|. .++..+-+.|+++.|..+++.+. ..|.. ..+..-.+.+...|+.+.|...++++.+++-.|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 45544443 46777888999999999998887 55543 2444455777788999999999999999886655555567
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCcc-----cCCceeEEEecCe
Q 036661 569 ANIYALGGRWDGVANLRTMMKRNQVK-----KFPGQSLVHINGK 607 (615)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 607 (615)
+.-..+.++.++|.++.-+....|.. .+..++|+.++.+
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g 489 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG 489 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence 78888999999999999888877641 2346778777643
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=8.5e-10 Score=100.55 Aligned_cols=163 Identities=16% Similarity=0.157 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 036661 395 MVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP-NRVTFLAVLQAC 470 (615)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 470 (615)
..+..+...+...|++++|.+.+++... .+...+..+...+...|++++|.+.+++..+....| ....+..+..++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3444445555555555555555554432 233455556666666677777777777766532222 233455566667
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661 471 THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 471 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
...|++++|...+++..+. .+.+...+..++..+...|++++|...+++.. .+.+...+..+...+...|+.++|.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 7777777777777777642 22234556667777777777777777777664 2333445555666666777777777
Q ss_pred HHHHHHhccCC
Q 036661 549 YVAYRLFELEP 559 (615)
Q Consensus 549 ~~~~~~~~~~p 559 (615)
...+.+.+..|
T Consensus 224 ~~~~~~~~~~~ 234 (234)
T TIGR02521 224 RYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhhCc
Confidence 77776665543
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.1e-06 Score=85.77 Aligned_cols=470 Identities=14% Similarity=0.125 Sum_probs=268.7
Q ss_pred HHHHHHHhhcCCChhHHHHhhccCCC--CCchhHHH----HHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHH
Q 036661 92 QTTMVDMYAKCDRLDCAYKLFDKMPD--RDVASWNA----MIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAA 165 (615)
Q Consensus 92 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 165 (615)
+..+.+.|.++|-...|++.+..+.. +..+.-+. -+..|.-.-.++.++++++.|...+++.+..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34556666777777777777766543 11111000 0223333446777888888888877777776666555555
Q ss_pred HhcCChhHHHHHHHHHHHh-----------cCCCccchHHHHHHHHHccCCHHHHHHHHHhccc----------------
Q 036661 166 IHAKHLSLLKSVHSFGIHI-----------GVDADVSVCNTWISAYAKCNDLKMAELVFRGIEE---------------- 218 (615)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------- 218 (615)
...=..+...++|+..... ++.-|+.+.-..+.+.++.|++.+.+++.++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 5544445555555554321 3456777777888888888888888777643110
Q ss_pred -CCC------------Ccch--H----HHHHHHHhc--------------------------------------------
Q 036661 219 -GLR------------TVVS--W----NSIIGGCTY-------------------------------------------- 235 (615)
Q Consensus 219 -~~~------------~~~~--~----~~li~~~~~-------------------------------------------- 235 (615)
..| +... | ...|..|.+
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 011 0000 0 112222222
Q ss_pred --CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhh-hh---HHHH------HHHHh-----------c----
Q 036661 236 --GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ-GR---LVHS------HGIHY-----------G---- 288 (615)
Q Consensus 236 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~---~~~~------~~~~~-----------~---- 288 (615)
.++..--+.+++...+.|. .|..|++.+...|...++-.+ -. ..++ -..++ |
T Consensus 849 EkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 2222333334444455554 566667777666554332111 10 0111 01111 1
Q ss_pred ----CCCChhHHHHHHHHHHhcCCHHHHHHHHhcc-----------------CCCCcccHHHHHHHHHhcCChhHHHHHH
Q 036661 289 ----FDLDVSVINTLISMYSKCGDIDSARFLFDGM-----------------CDRTRVSWTAMISGYAQKGDLDEALRLF 347 (615)
Q Consensus 289 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 347 (615)
+-.....|....+.+.++.+.+--.+++.+- ...|+...+.-+.++...+-+.+.++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 0111223444455555555555444444221 1125555666777888888888888888
Q ss_pred HHHHHCCCC-CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCC-----------------------CCchHHHHHHHHH
Q 036661 348 FAMEAAGEV-PDLVTVLSMISGCGQSGALELGKWFDNYACSGGL-----------------------KDNVMVCNALIDM 403 (615)
Q Consensus 348 ~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~ 403 (615)
+++.-.+-. ........++-.-+-..+..++.++.+++-..+. ..+......|+.
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie- 1086 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE- 1086 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH-
Confidence 887643211 1111122222222222233444444444433221 111111111111
Q ss_pred HHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661 404 YSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF 483 (615)
Q Consensus 404 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 483 (615)
..+.+++|.+.-++.. .+..|+.+..+-.+.|...+|++-|-+. -|+..|.-+++...+.|.|++-.+++
T Consensus 1087 --~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 --NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred --HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1233333333333332 3467999999999999999998766442 35567889999999999999999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 484 NLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
..++++ .-.|... +.|+.+|++.++..+-.+++. .|+.......+.-|...|.++.|.-+|... .
T Consensus 1157 ~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------S 1221 (1666)
T KOG0985|consen 1157 LMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------S 1221 (1666)
T ss_pred HHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------h
Confidence 988865 4455544 468999999999887666553 578888888999999999999998887653 4
Q ss_pred ChHhHHHHHHccCChHHHHHHHHHH
Q 036661 564 PYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 564 ~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
-|..|+.++...|.|..|...-++.
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4788899999999998888766655
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.8e-11 Score=79.37 Aligned_cols=50 Identities=32% Similarity=0.474 Sum_probs=46.0
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHh
Q 036661 118 RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIH 167 (615)
Q Consensus 118 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 167 (615)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=4.6e-09 Score=98.15 Aligned_cols=232 Identities=11% Similarity=-0.045 Sum_probs=157.0
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661 338 GDLDEALRLFFAMEAAG-EVPD--LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR 414 (615)
Q Consensus 338 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 414 (615)
+..+.++..+.++.... ..|+ ...|..+...+...|+.+.|...|+...+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34566666666666432 1222 2345566666777888888888888887765 556788888999999999999999
Q ss_pred HHHhcCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC
Q 036661 415 ELFYALPE--K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ 491 (615)
Q Consensus 415 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 491 (615)
+.|+...+ | +..+|..+..++...|++++|++.+++..+. .|+..........+...++.++|...+.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99988765 3 4568888888899999999999999999986 55443222222234556789999999977653 2
Q ss_pred CCCChhHHHHHHHHHHhcCChHH--HHHHHHhCC-CC----C-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCC-CCC
Q 036661 492 VNPELNHYSCMADLLGRKGKLKE--ALDFVQSMP-IK----S-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP-HSA 562 (615)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~-~~----p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~ 562 (615)
.+|+...+ .+ .....|+..+ +++.+.+.. .. | ....|..++..+...|++++|+..|+++++.+| +..
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23332221 23 3333555543 343333322 11 1 235788899999999999999999999999997 555
Q ss_pred CChHhHHHHHHccCC
Q 036661 563 APYVEMANIYALGGR 577 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~ 577 (615)
+....+..+....++
T Consensus 272 e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 272 EHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555556555544333
No 81
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.8e-06 Score=85.44 Aligned_cols=226 Identities=10% Similarity=0.066 Sum_probs=112.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHH
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKN--------DIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQ 92 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 92 (615)
.|..|.+.|.+..+.+-|.-.+-.|... ..+-+..+=..+.......|.+++|+.+|.+-.+.+
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D-------- 830 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD-------- 830 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------
Confidence 5777777777777777666666655431 111111222223333345677777777777665532
Q ss_pred HHHHHHhhcCCChhHHHHhhccCCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCCh
Q 036661 93 TTMVDMYAKCDRLDCAYKLFDKMPDR-DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHL 171 (615)
Q Consensus 93 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 171 (615)
.|-..|-..|.|++|.++-+.-.+- =..||.....-+-..++.+.|++.|++..- |-...+..|. .++
T Consensus 831 -LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p 899 (1416)
T KOG3617|consen 831 -LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYP 899 (1416)
T ss_pred -HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hCh
Confidence 3445556667777777766543321 123555556666666777777777765321 1111111110 111
Q ss_pred hHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661 172 SLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIY 251 (615)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 251 (615)
...+++.+.+ .|...|.--...+-..|+.+.|+.+|.... -|-.+++..+-+|+.++|-++-++-
T Consensus 900 ~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-------D~fs~VrI~C~qGk~~kAa~iA~es-- 964 (1416)
T KOG3617|consen 900 KQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAK-------DYFSMVRIKCIQGKTDKAARIAEES-- 964 (1416)
T ss_pred HHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhh-------hhhhheeeEeeccCchHHHHHHHhc--
Confidence 1111111111 122333333333444566666666655444 2444555555556666655555442
Q ss_pred CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHH
Q 036661 252 DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHG 284 (615)
Q Consensus 252 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (615)
-|......+.+.|...|++.+|...|...
T Consensus 965 ----gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 965 ----GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ----ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33444445555555556555555555443
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.1e-07 Score=82.80 Aligned_cols=179 Identities=7% Similarity=-0.027 Sum_probs=92.9
Q ss_pred hcCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHH
Q 036661 305 KCGDIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWF 381 (615)
Q Consensus 305 ~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 381 (615)
..++++.|+.+-++.++. +...+-.-...+...+++++|.-.|+..+... +-+...|..++.+|...|.+.+|...
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 344555555555544222 22333333345555566666666666555431 23445666666666666666655554
Q ss_pred HHHHHhcCCCCchHHHHHHH-HHHH-hcCChHHHHHHHhcCCC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 036661 382 DNYACSGGLKDNVMVCNALI-DMYS-KCGSIGDARELFYALPE--KT-VVSWTTMIAGCALNGEFVEALDLFHQMMELDL 456 (615)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 456 (615)
-+...+.- +.+..+...+. ..+. ....-++|.++++.... |+ ....+.+...+...|.+++++.++++....
T Consensus 391 An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-- 467 (564)
T KOG1174|consen 391 ANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-- 467 (564)
T ss_pred HHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--
Confidence 44433311 23333333331 1121 12223556666665544 22 234555556666666666666666666553
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 457 RPNRVTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 457 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
.||....+.|...+...+.+++|.+.|..+.
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5666666666666666666666666666655
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=2.1e-08 Score=97.63 Aligned_cols=235 Identities=14% Similarity=0.158 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCC----------Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CC
Q 036661 294 SVINTLISMYSKCGDIDSARFLFDGMCDR----------TRV-SWTAMISGYAQKGDLDEALRLFFAMEAA-----G-EV 356 (615)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~ 356 (615)
.+...+...|...|+++.|+.+++...+. .+. ..+.+...|...+++.+|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555666677777777776666654211 111 2334666778888888888888877542 1 01
Q ss_pred C-CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CCh-HHHHHH
Q 036661 357 P-DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTV-VSWTTM 431 (615)
Q Consensus 357 ~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~l 431 (615)
| -..++..|...|.+.|++++|...++...+ +++.... +.+ ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHH
Confidence 1 112333444445555555555544443322 1111111 111 234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhh----C-CCCC-hhH
Q 036661 432 IAGCALNGEFVEALDLFHQMMEL---DLRPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY----Q-VNPE-LNH 498 (615)
Q Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~ 498 (615)
...+...+++++|..+++...+. -+.++ ..++..|...|...|++++|.++++++.... + ..+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 66667777777777777665441 11222 2478889999999999999999999887542 1 1222 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--------CCCCh-hhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSMP--------IKSDA-GIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
++.|+..|.+.+++.+|.++|.+.. ..|+. .++..|...|...|+++.|+++.++++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 7788889999999999988887763 33333 4778899999999999999999998874
No 84
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=6.3e-11 Score=76.75 Aligned_cols=50 Identities=28% Similarity=0.537 Sum_probs=45.8
Q ss_pred CCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccC
Q 036661 221 RTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVC 270 (615)
Q Consensus 221 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 270 (615)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999988764
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.6e-06 Score=82.94 Aligned_cols=124 Identities=9% Similarity=0.001 Sum_probs=80.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCC
Q 036661 24 SQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCD 103 (615)
Q Consensus 24 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 103 (615)
+-++.+...+++++|.+...++...+ +-+...+..-+-++.+.+.+++|+.+.+.-.... ..+...+ .-.-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~f-EKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFF-EKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhH-HHHHHHHHcc
Confidence 34667777888888888888888765 3355667777777788888888874433211100 0111111 1122234667
Q ss_pred ChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcC
Q 036661 104 RLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVG 150 (615)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 150 (615)
..++|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 88888888885555555566666777788888888888888887765
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=1.1e-08 Score=85.55 Aligned_cols=195 Identities=11% Similarity=-0.013 Sum_probs=148.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhh
Q 036661 396 VCNALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACT 471 (615)
Q Consensus 396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 471 (615)
+...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+. .|+. ...|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 3455667788888888888888887763 3457788888888888888888888888875 4544 57777777778
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHH
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEY 549 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~ 549 (615)
..|++++|...|++...+.....-..+|..++-+..+.|+.+.|.+.|++.. ..| .+.....+.......|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888888764444445678888888888888888888888876 334 34567777788888888888888
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 550 VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 550 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
.+++...-.+-+...+-..+.+-.+.|+.+.|.++=.++...-
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888877666667777777788888888888877766665443
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=5.2e-07 Score=91.16 Aligned_cols=275 Identities=14% Similarity=0.036 Sum_probs=154.0
Q ss_pred HHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 036661 311 SARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACS 387 (615)
Q Consensus 311 ~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 387 (615)
.|...+... ...+...||.|.-. ...|.+.-+...|-+-... .+....+|..+.-.+....+++.|...+...+.
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 445555443 33345566655444 3345555554444433332 234555666666667777788888888877766
Q ss_pred cCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC-----CC---CChHHHHHHHHHHHhcCChHHHHHHHHH---------
Q 036661 388 GGLKDNVMVCNALIDMYSKCGSIGDARELFYAL-----PE---KTVVSWTTMIAGCALNGEFVEALDLFHQ--------- 450 (615)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------- 450 (615)
.. +.+...+-.........|+.-++..+|..- .+ ++..-|-.........|+.++-+...+.
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 54 334444443344444566666666666541 11 2333343334444555665544333332
Q ss_pred -HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhCCCC
Q 036661 451 -MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS----CMADLLGRKGKLKEALDFVQSMPIK 525 (615)
Q Consensus 451 -~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (615)
... +.+.+...|...+....+.+.+..|.+...+...-....-+...|+ .+.+.++..|.++.|..-+......
T Consensus 958 ~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 958 YYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 222 2233346777777777777777777777766553222222333333 4667788889999887777666533
Q ss_pred CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH---hHHHHHHccCChHHHHHHHHHHHh
Q 036661 526 SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV---EMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 526 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.+..+...-+.. .-.++++++.+.|++++.+..++..... .++......|.-+.|...+-+...
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 333333322222 4468999999999999987766554333 344555566667777776655443
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.3e-06 Score=84.74 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=129.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 036661 325 VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 404 (615)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (615)
..|+.+..+-.+.|...+|++-|-+ ..|+..|..++..+.+.|.++.-..++...++..-.|.+. ..|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 4677777787788887777776643 2456678888888888888888888887777765555544 4677788
Q ss_pred HhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 036661 405 SKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN 484 (615)
Q Consensus 405 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 484 (615)
++.+++.+.++++. .||..-...+..-|...+.++.|.-+|.... .|..|...+...|+++.|.+.-+
T Consensus 1177 Akt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888777666543 3555555556666666666666654443322 24445555555555555544433
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 485 LMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 485 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
++ .+..+|..+..+|...+.+.-|.-.=-. .--...-+..++..|...|-+++-+.+++..+.++.-+...
T Consensus 1245 KA-------ns~ktWK~VcfaCvd~~EFrlAQiCGL~--iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgm 1315 (1666)
T KOG0985|consen 1245 KA-------NSTKTWKEVCFACVDKEEFRLAQICGLN--IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGM 1315 (1666)
T ss_pred hc-------cchhHHHHHHHHHhchhhhhHHHhcCce--EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHH
Confidence 32 2334555555555544443322111000 11122234455666666666666666666666666555566
Q ss_pred hHhHHHHHHc
Q 036661 565 YVEMANIYAL 574 (615)
Q Consensus 565 ~~~l~~~~~~ 574 (615)
+..|+-+|.+
T Consensus 1316 fTELaiLYsk 1325 (1666)
T KOG0985|consen 1316 FTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHh
Confidence 6666555544
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=4.9e-09 Score=99.36 Aligned_cols=216 Identities=12% Similarity=0.072 Sum_probs=159.7
Q ss_pred cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHH
Q 036661 370 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALD 446 (615)
Q Consensus 370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 446 (615)
.+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+ .|......|...|...|.-..|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34555666666666665554 55566666666666666666666666666554 355677777777777777778888
Q ss_pred HHHHHHHcCCCCCHHHHHHHH-----------HHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 036661 447 LFHQMMELDLRPNRVTFLAVL-----------QACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEA 515 (615)
Q Consensus 447 ~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 515 (615)
.++.-+... |.. ..+. ..+.....+....++|-++....+..+|+.+...|+-+|.-.|++++|
T Consensus 375 ~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777765542 110 0000 122223334555666666665556568888999999999999999999
Q ss_pred HHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 516 LDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 516 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
.+.|+.+. .+| |...|+.|+..+....+.++|+..|.+++++.|.-..+.+.||-.|...|.|++|.+.|-..+.-
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999987 566 56789999999998889999999999999999999999999999999999999999999887653
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=2.4e-06 Score=83.64 Aligned_cols=354 Identities=13% Similarity=0.059 Sum_probs=206.3
Q ss_pred HHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhh
Q 036661 195 TWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL 274 (615)
Q Consensus 195 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 274 (615)
..+.+......+.+|..+++.+........-|..+...|...|+++.|.++|.+. ..++..+..|.+.|.+
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3455666777888888888888754445556777778888889999888888653 2355567778888888
Q ss_pred hhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036661 275 VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAG 354 (615)
Q Consensus 275 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 354 (615)
+.|.++-.+.. |.......|.+-..-.-+.|++.+|++++-.+..|+. .|..|-+.|..++.+++..+-...
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence 88887766543 3334455666666777788899999998888877754 366788888888888877654321
Q ss_pred CCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH-----HHH
Q 036661 355 EVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV-----SWT 429 (615)
Q Consensus 355 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~ 429 (615)
.-..|-..+..-+...|++..|+.-|-+..+ |.+-+++|-.++-+++|.++-+.--..|.. .|.
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 1123555666677778888888776655432 455666777777788777776532222211 111
Q ss_pred -------------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhh
Q 036661 430 -------------------TMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVY 490 (615)
Q Consensus 430 -------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 490 (615)
.-+...+..+-++-|..+-+-..+.. .|. ....+..-+...|++++|-+.+-+.++-.
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 11122233344444444433333321 122 22233344567788888877777666321
Q ss_pred CC-------CCChhHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHH
Q 036661 491 QV-------NPELNHY---------SCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRL 554 (615)
Q Consensus 491 ~~-------~~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 554 (615)
.. .|+..-. ...+..+.+..++..|.++-+.-....-+..+....+.....|++-+|+.++-++
T Consensus 1026 tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra 1105 (1636)
T KOG3616|consen 1026 TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA 1105 (1636)
T ss_pred cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeec
Confidence 11 1111000 0112233333444444443333221111224444445555677888777665433
Q ss_pred hccCCCCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661 555 FELEPHSAAPYVEMANIYALGGRWDGVANLRTM 587 (615)
Q Consensus 555 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 587 (615)
- .|+ ...+-|...+.|.+|+.+-+.
T Consensus 1106 n--kp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1106 N--KPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred C--CCc------hHHHHHHHhccChHHHHHHHh
Confidence 2 243 334556777888888776543
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.1e-07 Score=89.70 Aligned_cols=401 Identities=11% Similarity=0.030 Sum_probs=197.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCC-cchHHHHHHHHhcCCChhh
Q 036661 163 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRT-VVSWNSIIGGCTYGDKFDD 241 (615)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 241 (615)
.+....|+++.|...|...+.... +|...|..-..+|.+.|++++|.+=-.+..+..|+ ...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 455667788888888877776653 36667777777788888877776655555444443 5567777777777777777
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHH-----HHHHHhcCCHHHHHHH
Q 036661 242 SLNFYRHMIYDGFRPDV-TTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTL-----ISMYSKCGDIDSARFL 315 (615)
Q Consensus 242 a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~ 315 (615)
|+.-|.+=++.. |+. ..+.-+..+.. .+... -+.+ -++..+..+ .+.+...-.+-.-+..
T Consensus 89 A~~ay~~GL~~d--~~n~~L~~gl~~a~~--~~~~~-~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 89 AILAYSEGLEKD--PSNKQLKTGLAQAYL--EDYAA-DQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHhhcC--CchHHHHHhHHHhhh--HHHHh-hhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 777777766542 333 33444444430 00000 0000 001111110 0111111111111111
Q ss_pred HhccCCCCccc---HHHHHHHHHhcCChhH-HHHHHHHHH-HCCCCC----------------------CHHHHHHHHHh
Q 036661 316 FDGMCDRTRVS---WTAMISGYAQKGDLDE-ALRLFFAME-AAGEVP----------------------DLVTVLSMISG 368 (615)
Q Consensus 316 ~~~~~~~~~~~---~~~ll~~~~~~~~~~~-a~~~~~~~~-~~~~~~----------------------~~~~~~~ll~~ 368 (615)
+..-+. +.-. ...++.+.......+. ....-..+. ..+..| -..-...+..+
T Consensus 155 ~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 155 IQKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred hhcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 111000 0000 0001111100000000 000000000 000001 00112334444
Q ss_pred hcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh---HHH-------HHHHHHHHhc
Q 036661 369 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTV---VSW-------TTMIAGCALN 438 (615)
Q Consensus 369 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-------~~l~~~~~~~ 438 (615)
..+..+++.+.+-+....+.. -+..-++....+|...|.+..+...-....+.+- .-| ..+..+|.+.
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 444555556655555555543 3333445555556666665555444433322111 111 2233344455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh-HHHHHHHHHHhcCChHHHHH
Q 036661 439 GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN-HYSCMADLLGRKGKLKEALD 517 (615)
Q Consensus 439 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 517 (615)
++++.++..|++.......|+... +....+++........ -+.|... -...-+..+.+.|++.+|+.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 666666666666555433332111 1112222222222221 2233321 11122556677888888888
Q ss_pred HHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 518 FVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 518 ~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.+.++. ..| |...|.....+|.+.|++..|+.-.++.++++|+....|..-+.++....+|++|.+.|++.++..+
T Consensus 380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 888876 344 4557777777888888888888888888888888888888888888888888888888877776553
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=2.8e-09 Score=97.86 Aligned_cols=249 Identities=11% Similarity=0.020 Sum_probs=145.5
Q ss_pred HHHHhcCCHHHHHHHHhccCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhh
Q 036661 301 SMYSKCGDIDSARFLFDGMCDR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALE 376 (615)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 376 (615)
+-+.-.|.+..+..-.+ .... .......+.+++...|+++.++ .++.... .|.......+...+...++.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888875554 2111 2224455677888888876544 3333333 566666655555555444444
Q ss_pred HHHHHHHHHHhcCCC-CchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036661 377 LGKWFDNYACSGGLK-DNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELD 455 (615)
Q Consensus 377 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 455 (615)
.+..-++........ .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 444444433322222 23333333445566778888888888765 55666677778888888888888888888764
Q ss_pred CCCCHHHHHHHHHHhh----ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-Chh
Q 036661 456 LRPNRVTFLAVLQACT----HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAG 529 (615)
Q Consensus 456 ~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~ 529 (615)
..|.. ...+..++. -.+.+.+|..+|+++.. ...+++.+.+.++.++...|++++|.+++.+.. ..| ++.
T Consensus 161 -~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 161 -DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp -SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred -CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 34433 233333322 22357888888888765 345666777777777777777777777777765 223 344
Q ss_pred hHHHHHHHHHHhCCh-hHHHHHHHHHhccCCCC
Q 036661 530 IWGTLLCACKIHRNI-EIGEYVAYRLFELEPHS 561 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~ 561 (615)
++..++-+....|+. +.+.+.+.++...+|++
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 555666666666665 56667777777777763
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2e-07 Score=80.96 Aligned_cols=404 Identities=10% Similarity=0.013 Sum_probs=212.6
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHH-HHHHhcCCChhhHH
Q 036661 165 AIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSI-IGGCTYGDKFDDSL 243 (615)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~ 243 (615)
+.+..++..+.+++..-.+.. +.+....+.|..+|....++..|-..++++....|...-|... ..++.+.+.+..|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 333344444444443333321 1144556667777777888888888888877666665555443 35566778888888
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHh--ccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036661 244 NFYRHMIYDGFRPDVTTVVSLLSS--CVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321 (615)
Q Consensus 244 ~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (615)
++...|... |+...-..-+.+ ..+.+++..+..++++.... .+..+.+.......+.|+.+.|.+-|+...+
T Consensus 99 rV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 99 RVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHh
Confidence 888777542 222211111121 12345555555555543321 2333344444455566777777776666522
Q ss_pred C----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHhhcccchhhHHHHHHHHHHhcCCCCc
Q 036661 322 R----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTV----LSMISGCGQSGALELGKWFDNYACSGGLKDN 393 (615)
Q Consensus 322 ~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 393 (615)
- ....||.-+. ..+.|+++.|++...+++++|++..+..- .-.+.+ ...|+. ..+.. ..-
T Consensus 173 vsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~-------Sal 240 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQ-------SAL 240 (459)
T ss_pred hcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHH-------HHH
Confidence 1 2334554443 33456667777777777776654222100 000000 000000 00000 000
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661 394 VMVCNALIDMYSKCGSIGDARELFYALPE-----KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ 468 (615)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 468 (615)
+..+|.-...+.+.|+++.|.+-+..|+. -|++|...+.-.= ..+++.+..+-++-+.+.+ +-...||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence 12234444556788999999999999986 3666655443322 2355666666666666653 234578888899
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHH-HhcCChHHHHHHHHhCCCCCChhhHHHHHHHH-HHhCC---
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLL-GRKGKLKEALDFVQSMPIKSDAGIWGTLLCAC-KIHRN--- 543 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~~~--- 543 (615)
.|++..-++-|.+++.+-....-.-.+...|+ |.+++ .-.-..++|++-+..+...-........+..- .++.+
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~ 397 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDE 397 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 99998888888887754321100011223333 33333 34456777776665543110000111111111 11111
Q ss_pred -hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 544 -IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 544 -~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
...|++-+++.+++. ..+....+++|++..++..+.+.|+.-.+-.-
T Consensus 398 a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 398 AIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 223444555555543 23466778999999999999999988766543
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=3.3e-06 Score=83.70 Aligned_cols=262 Identities=11% Similarity=0.062 Sum_probs=124.6
Q ss_pred ccCCCchhcHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhc-------
Q 036661 13 IYRSSTINQWNSQIR--EAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKS------- 83 (615)
Q Consensus 13 ~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------- 83 (615)
..+.+.. +-..+++ -|..-|+.+.|.+..+.++ +...|..+.+.|.+..+++-|.-.+..|...
T Consensus 721 le~Cd~~-TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR 793 (1416)
T KOG3617|consen 721 LENCDES-TRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALR 793 (1416)
T ss_pred ccccCHH-HHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHH
Confidence 3344444 4445543 5666788888887777655 3456888888888887777777666555421
Q ss_pred -CC-CCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH
Q 036661 84 -PF-WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL 161 (615)
Q Consensus 84 -~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 161 (615)
.. .++ ..-....-.....|.+++|+.++.+-.+ |..|=..|-..|.+.+|+++-+.--+-.+ ..||..-
T Consensus 794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 00 111 1111111222344666666666655332 33444455556666666665543222111 2233333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhh
Q 036661 162 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDD 241 (615)
Q Consensus 162 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 241 (615)
..-+...+|.+.|.+.|+..-.+. ..++..|. .++...+.+.+.+. +...|.-....+-..|+.+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~ha----fev~rmL~------e~p~~~e~Yv~~~~----d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHA----FEVFRMLK------EYPKQIEQYVRRKR----DESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChH----HHHHHHHH------hChHHHHHHHHhcc----chHHHHHHHHHHhcccchHH
Confidence 344444555555555554321110 00111100 11111122222221 22333333344445566666
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036661 242 SLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM 319 (615)
Q Consensus 242 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (615)
|+.+|..... |..+++..+-.|+.++|.++-++ .-|....-.|...|-..|++.+|..+|.+.
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6666655432 34445555555555555555443 223344445555566666666666555443
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.03 E-value=3.3e-06 Score=85.61 Aligned_cols=430 Identities=12% Similarity=0.020 Sum_probs=224.7
Q ss_pred CCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCC-CCChHHHHH
Q 036661 16 SSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPF-WSDIFVQTT 94 (615)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 94 (615)
++....|..|...|+...+...|.+.|+...+.+.. +..........|++..+++.|..+.-....... ..-..-|-.
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence 344447888888888888888888888888876543 666777788888888888888887333222110 001112233
Q ss_pred HHHHhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHH--HHHhcC
Q 036661 95 MVDMYAKCDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQ--AAIHAK 169 (615)
Q Consensus 95 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~ 169 (615)
+.-.|...++...|..-|+...+ .|...|..+..+|.+.|++..|+++|.+... +.|+.. |..... .-+..|
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNG 644 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhh
Confidence 44446667777777777777654 3677888899999999999999999987765 445432 222222 234567
Q ss_pred ChhHHHHHHHHHHHhc------CCCccchHHHHHHHHHccCCHHHHHHHHHhcccC---------CCCcchHHHHHHHHh
Q 036661 170 HLSLLKSVHSFGIHIG------VDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG---------LRTVVSWNSIIGGCT 234 (615)
Q Consensus 170 ~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~li~~~~ 234 (615)
.+.++...+...+..- ..--..++..+...+...|=...|..+++.-.+. ..+...|..+-.+|.
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 7777777777665421 1111122222222222223233333333221110 112222222211110
Q ss_pred ---cCC--Ch-hhHHHH-HHHHHHCCCCCC--------------------HHhHHHHHHhc-------cCch-hhhhhhH
Q 036661 235 ---YGD--KF-DDSLNF-YRHMIYDGFRPD--------------------VTTVVSLLSSC-------VCPE-ALVQGRL 279 (615)
Q Consensus 235 ---~~~--~~-~~a~~~-~~~m~~~~~~p~--------------------~~~~~~ll~~~-------~~~~-~~~~a~~ 279 (615)
... -+ .....+ +.+....+.-|+ ..++..+...+ ...+ +...|..
T Consensus 725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 000 00 000011 111111121111 12222222111 1111 1224444
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036661 280 VHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEV 356 (615)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 356 (615)
.+...++.. ..+...++.|.- ....|.+.-+...|-.. .+.+..+|..+...+.+..+++-|...|...+... +
T Consensus 805 c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P 881 (1238)
T KOG1127|consen 805 CCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-P 881 (1238)
T ss_pred HHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcC-c
Confidence 444444332 223344444433 35556777777776554 33456678888888889999999999998877642 3
Q ss_pred CCHHHHHHHHHhhcccchhhHHHHHHHHHH----hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC----------
Q 036661 357 PDLVTVLSMISGCGQSGALELGKWFDNYAC----SGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---------- 422 (615)
Q Consensus 357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 422 (615)
.|...+..........|+.-+...++..-. ..|--+...-+.+........|+.++-+...+.+..
T Consensus 882 ~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~ 961 (1238)
T KOG1127|consen 882 LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL 961 (1238)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh
Confidence 444455444444445565555666655521 133344444444444555566666665555554443
Q ss_pred --C-ChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036661 423 --K-TVVSWTTMIAGCALNGEFVEALDLFHQMM 452 (615)
Q Consensus 423 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 452 (615)
| +...|.+.+...-..+.+..|.+...+++
T Consensus 962 ~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 962 GHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1 23455555555555666666666655543
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=3.5e-07 Score=81.16 Aligned_cols=296 Identities=11% Similarity=0.029 Sum_probs=131.9
Q ss_pred HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCcc-cHHHHHHHHHhc
Q 036661 261 VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC--DRTRV-SWTAMISGYAQK 337 (615)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~-~~~~ll~~~~~~ 337 (615)
...+...+...|++..|..-|...++.+ +.+-.++-.-...|...|+...|+.-+.++. +||.. .-..-...+.+.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 3344444555555555555555444322 1111222223345555555555555555542 22221 111122345566
Q ss_pred CChhHHHHHHHHHHHCCCCCCH--H------------HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661 338 GDLDEALRLFFAMEAAGEVPDL--V------------TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM 403 (615)
Q Consensus 338 ~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (615)
|.++.|..-|+..++....-+. . .....+..+...|+...++.....+.+.. +.+...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 6666666666666554321100 0 01122233344455555555555555543 4455555555555
Q ss_pred HHhcCChHHHHHHHhcC---CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-H---HHH---------H
Q 036661 404 YSKCGSIGDARELFYAL---PEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVT-F---LAV---------L 467 (615)
Q Consensus 404 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~---~~l---------~ 467 (615)
|...|++..|+.-++.. ...+...+..+-..+...|+.+.++...++-.+. .||... | ..| +
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHH
Confidence 55555555555444332 2344444545555555555555555555555543 444321 1 111 0
Q ss_pred HHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHH
Q 036661 468 QACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKI 540 (615)
Q Consensus 468 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~ 540 (615)
......++|.++++..+...+. .|. ...+..+..++...|++.+|++...++. ..|+ ..++-....+|.-
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1122234444444444444321 222 1223334444444555555555555544 3333 3344444445554
Q ss_pred hCChhHHHHHHHHHhccCCCCCC
Q 036661 541 HRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 541 ~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
...++.|+.-|+++.+.+|++..
T Consensus 354 dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred hHHHHHHHHHHHHHHhcCcccHH
Confidence 55555555555555555555433
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.2e-06 Score=82.86 Aligned_cols=428 Identities=12% Similarity=-0.001 Sum_probs=257.6
Q ss_pred HHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCcc-chHHHHHHHHHccCCH
Q 036661 128 VGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADV-SVCNTWISAYAKCNDL 206 (615)
Q Consensus 128 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 206 (615)
.+....|+++.|+.+|.+..... ++|...|+.=..+++..|+++.|.+=-..-++. .|+. ..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45567899999999999988754 336677888889999999999998777666654 5665 4799999999999999
Q ss_pred HHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHH-HHHHHH-HHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHH
Q 036661 207 KMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSL-NFYRHM-IYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSH 283 (615)
Q Consensus 207 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~-~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (615)
++|...|.+-.+..| +...++-+..++ ..+.+. +.|..- .-.++.-++.|- .......+. .++..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~-----~~~~~~~~~---~~l~~ 154 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTN-----YSLSDPAYV---KILEI 154 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhh-----hhhccHHHH---HHHHH
Confidence 999999998776655 455666666665 111111 111000 000111122111 111111111 11111
Q ss_pred HHHh----cCCC-ChhHHHHHHHHHHhcCCHHH-HHHHHhc-----cCCC------------C----------cccHHHH
Q 036661 284 GIHY----GFDL-DVSVINTLISMYSKCGDIDS-ARFLFDG-----MCDR------------T----------RVSWTAM 330 (615)
Q Consensus 284 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~-----~~~~------------~----------~~~~~~l 330 (615)
+... +... ++. ++.+.......+. ....-.. +..| | ......+
T Consensus 155 ~~~~p~~l~~~l~d~r----~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPR----LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred hhcCcHhhhcccccHH----HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 1110 0000 111 1111111100000 0000000 0011 0 0124456
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC------chHHHHHHHHHH
Q 036661 331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD------NVMVCNALIDMY 404 (615)
Q Consensus 331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~ 404 (615)
....-+..++..|++.+....+.. -+..-++....++...|........-....+.|... =...+..+..+|
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 667777788889999988887753 344444555556777776666655555444433111 011222244467
Q ss_pred HhcCChHHHHHHHhcCCCC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHH
Q 036661 405 SKCGSIGDARELFYALPEK--TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWG 481 (615)
Q Consensus 405 ~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 481 (615)
.+.++++.+...|++...+ ++.+ ..+.+..+++++..+...-. .|.. .-...-...+.+.|++..|+.
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 7788899999998875442 2111 22334556666655555443 4443 223333677889999999999
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661 482 YFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 559 (615)
.|.++++. .+-|...|...+-+|.+.|.+..|+.-.+... ..|+ ...|..-+.++..-.++++|.+.|+++++.+|
T Consensus 380 ~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 380 HYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999864 35567789999999999999999999888776 4444 44565556666677899999999999999999
Q ss_pred CCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661 560 HSAAPYVEMANIYALGGRWDGVANLRTM 587 (615)
Q Consensus 560 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 587 (615)
++..+...+.+++..+..-....++.++
T Consensus 458 ~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9988888888887764444444444443
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=1.9e-07 Score=92.32 Aligned_cols=303 Identities=12% Similarity=0.054 Sum_probs=160.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHh------c
Q 036661 162 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCT------Y 235 (615)
Q Consensus 162 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~------~ 235 (615)
...+...|+++.|.+.++.-.+. +.............+.+.|+.++|..++..+....|+...|...+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34456778888888887664443 2333456667777888888888888888887777666555554444333 1
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhh-hhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036661 236 GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL-VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARF 314 (615)
Q Consensus 236 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 314 (615)
....+...++++++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|+.|-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 224566677777776543 4444433333233332222 23445555555556432 34444444443333322222
Q ss_pred HHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC
Q 036661 315 LFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL--VTVLSMISGCGQSGALELGKWFDNYACSGGLKD 392 (615)
Q Consensus 315 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 392 (615)
++..... .....+.+.... ....-+|.. .++..+...|...|++++|.++++..++.. +-
T Consensus 165 l~~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt 226 (517)
T PF12569_consen 165 LVEEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PT 226 (517)
T ss_pred HHHHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC
Confidence 2222100 000000000000 000112333 233444555666677777777777666654 33
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH------H
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVT------F 463 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------~ 463 (615)
.+..|..-...+-+.|++.+|.+.++....- |-..-+..+..+.+.|+.++|.+++......+..|-... |
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 3556666666777777777777776665553 334555566666677777777777766665543332211 1
Q ss_pred --HHHHHHhhccCchHHHHHHHHHHHH
Q 036661 464 --LAVLQACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 464 --~~l~~~~~~~~~~~~a~~~~~~~~~ 488 (615)
.-...+|.+.|++..|++.|..+.+
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2234567777777777766665554
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.9e-06 Score=75.14 Aligned_cols=315 Identities=10% Similarity=-0.047 Sum_probs=156.3
Q ss_pred HHHHHHHhhcCCChhHHHHhhccCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH-HHHHHh
Q 036661 92 QTTMVDMYAKCDRLDCAYKLFDKMPDR---DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL-TQAAIH 167 (615)
Q Consensus 92 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~ 167 (615)
+++.+..+.+..+++.|++++..-.++ +....+.|..+|-...++..|-++++++-.. .|...-|..- ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 444555556666666666666555442 4445666666666777777777777766552 3444444321 233445
Q ss_pred cCChhHHHHHHHHHHHhcCCCccchHHHHHHH--HHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHH
Q 036661 168 AKHLSLLKSVHSFGIHIGVDADVSVCNTWISA--YAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNF 245 (615)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 245 (615)
.+.+..|.++...|.+. |+...-..-+.+ ....+++..+..+.++.+. ..+..+.+.......+.|+++.|++-
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHH
Confidence 56666666666655431 121111111222 2235666677777776663 12333344444445567777777777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhH----HHHHHHHHHhcCCHHHHHHHHhccCC
Q 036661 246 YRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSV----INTLISMYSKCGDIDSARFLFDGMCD 321 (615)
Q Consensus 246 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (615)
|+...+-+---....|+..+. ..+.++.+.|....++++++|++..+.. ....+++-.-.+-...+..-
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa------ 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA------ 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH------
Confidence 777766543333445554443 3355677777777777777665322110 00000000000000000000
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHH
Q 036661 322 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAG-EVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNAL 400 (615)
Q Consensus 322 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 400 (615)
=+..+|.-...+.+.++++.|.+.+..|.-+. ...|++|...+.-.-. .+++-...+-+..+...+ +....+|..+
T Consensus 240 -l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 240 -LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred -HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 01123333444555666666666665553221 2345555544432221 122333333344444433 3445666677
Q ss_pred HHHHHhcCChHHHHHHHhcCCC
Q 036661 401 IDMYSKCGSIGDARELFYALPE 422 (615)
Q Consensus 401 ~~~~~~~g~~~~A~~~~~~~~~ 422 (615)
+-.|++..-++.|..++.+-..
T Consensus 317 LllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcc
Confidence 7777777777777777665444
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=2.8e-08 Score=90.30 Aligned_cols=180 Identities=13% Similarity=0.081 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Ch---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HH
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPE--K-TV---VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR----VT 462 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~ 462 (615)
....+..+...+...|+++.|...|+++.. | +. .++..+..++...|++++|+..++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555566666666666666666665543 2 11 34555666666666666666666666654 2221 13
Q ss_pred HHHHHHHhhcc--------CchHHHHHHHHHHHHhhCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH
Q 036661 463 FLAVLQACTHA--------GFLEKGWGYFNLMTKVYQVNPELN-HYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT 533 (615)
Q Consensus 463 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 533 (615)
+..+..++... |++++|.+.++.+.+. .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 34444444433 5566666666666543 23321 11111110 0000000 001124
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
+...+...|++++|...++++++..|+++ ..+..++.+|...|++++|.++++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56678889999999999999999988754 688999999999999999999999987765
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=6.3e-08 Score=89.00 Aligned_cols=246 Identities=11% Similarity=0.056 Sum_probs=149.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661 332 SGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 411 (615)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (615)
+.+.-.|++..++.-.+ ........+......+.+++...|+.+.+ +..+.... +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44555777877776555 22222122333444566677777765543 33333333 566666655555554445555
Q ss_pred HHHHHHhcCC-CC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 036661 412 DARELFYALP-EK----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLM 486 (615)
Q Consensus 412 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 486 (615)
.+..-+++.. .+ +..........+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665555433 22 2222222234455678888888777542 34556666777888888888888888888
Q ss_pred HHhhCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 487 TKVYQVNPELNHYSCMADLLG----RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 487 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
. .+..|. +...++.++. -..++.+|..+|+++. ..+++.+++.++.++...|++++|+..++++++.+|+
T Consensus 158 ~---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 Q---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp H---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred H---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 7 334443 3333444333 2336888888888876 4456667777888888888888888888888888888
Q ss_pred CCCChHhHHHHHHccCCh-HHHHHHHHHHHhcC
Q 036661 561 SAAPYVEMANIYALGGRW-DGVANLRTMMKRNQ 592 (615)
Q Consensus 561 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 592 (615)
++.+..+++-+....|+. +.+.+++.++.+..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 888888888888888887 66777787776543
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.99 E-value=3.5e-08 Score=85.52 Aligned_cols=150 Identities=7% Similarity=0.075 Sum_probs=106.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh
Q 036661 433 AGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKL 512 (615)
Q Consensus 433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 512 (615)
-.|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..++..|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 456677777665433322211 11 012235666777777777664 3345567788888888888888
Q ss_pred HHHHHHHHhCC-CCC-ChhhHHHHHHHH-HHhCC--hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661 513 KEALDFVQSMP-IKS-DAGIWGTLLCAC-KIHRN--IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTM 587 (615)
Q Consensus 513 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 587 (615)
++|...+++.. ..| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888876 444 455666677653 56666 58899999999999999999999999999999999999999999
Q ss_pred HHhcCcccC
Q 036661 588 MKRNQVKKF 596 (615)
Q Consensus 588 ~~~~~~~~~ 596 (615)
+.+.....+
T Consensus 170 aL~l~~~~~ 178 (198)
T PRK10370 170 VLDLNSPRV 178 (198)
T ss_pred HHhhCCCCc
Confidence 887665433
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=1.2e-06 Score=85.31 Aligned_cols=296 Identities=11% Similarity=-0.052 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcc---CCCCccc---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---H
Q 036661 295 VINTLISMYSKCGDIDSARFLFDGM---CDRTRVS---WTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLS---M 365 (615)
Q Consensus 295 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 365 (615)
.+..+...+...|+.+.+...+... .+.+... .......+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 3444455555556666654444443 1122111 2222334566788888888888877652 333333331 1
Q ss_pred HHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChH
Q 036661 366 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFV 442 (615)
Q Consensus 366 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 442 (615)
.......+..+.+.+.+.. .....+........+...+...|++++|.+.+++..+ .+...+..+..++...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 1112223444555554443 1122233344455666778889999999999887765 34567788888889999999
Q ss_pred HHHHHHHHHHHcCC-CCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHH-H--HHHHHHHhcCChHHHH
Q 036661 443 EALDLFHQMMELDL-RPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHY-S--CMADLLGRKGKLKEAL 516 (615)
Q Consensus 443 ~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~ 516 (615)
+|...+++...... .|+. ..+..+...+...|++++|..++++........+..... + .+...+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999998887531 1232 245567788889999999999999876321111111111 1 2233334445333333
Q ss_pred HH--H-HhCC-CCCC---hhhHHHHHHHHHHhCChhHHHHHHHHHhccCC---------CCCCChHhHHHHHHccCChHH
Q 036661 517 DF--V-QSMP-IKSD---AGIWGTLLCACKIHRNIEIGEYVAYRLFELEP---------HSAAPYVEMANIYALGGRWDG 580 (615)
Q Consensus 517 ~~--~-~~~~-~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~ 580 (615)
++ + .... ..|. .........++...|+.++|...++.+....- .........+.++.+.|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 1 1111 1111 12223455667778899999999888755221 124455667888999999999
Q ss_pred HHHHHHHHHhcC
Q 036661 581 VANLRTMMKRNQ 592 (615)
Q Consensus 581 A~~~~~~~~~~~ 592 (615)
|.+.+.......
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999998887644
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.93 E-value=1.3e-08 Score=83.40 Aligned_cols=105 Identities=10% Similarity=-0.117 Sum_probs=48.9
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCC
Q 036661 466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRN 543 (615)
Q Consensus 466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~ 543 (615)
+..++...|++++|...|+.+.. --+.+...+..++.++.+.|++++|...|+++. .+.+...+..++.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34444455555555555555442 112233444444555555555555555554443 22233344444444444555
Q ss_pred hhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661 544 IEIGEYVAYRLFELEPHSAAPYVEMANIY 572 (615)
Q Consensus 544 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 572 (615)
.++|+..+++++++.|+++..+...+.+.
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 55555555555555555554444444443
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=1.4e-06 Score=77.42 Aligned_cols=287 Identities=9% Similarity=0.046 Sum_probs=187.3
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHH---HhccCchhhhhhhHHHHHHHHhcCCCChhH-HHHH
Q 036661 224 VSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLL---SSCVCPEALVQGRLVHSHGIHYGFDLDVSV-INTL 299 (615)
Q Consensus 224 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 299 (615)
.-.--+...+...|++..|+.-|...++ .|+..|..+. ..|...|....|..=+...++. +||-.. ...-
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3344556677778888888888877765 4444444444 3466677777777666666654 455322 2233
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCcc------------------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036661 300 ISMYSKCGDIDSARFLFDGMCDRTRV------------------SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVT 361 (615)
Q Consensus 300 ~~~~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 361 (615)
...+.+.|.++.|..-|+.+.+.++. .....+..+...|+...|+.....+++. .+-|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHH
Confidence 45677888888888888877433221 1223345566678888888888888775 2456666
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChH----HHHH---HH
Q 036661 362 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVV----SWTT---MI 432 (615)
Q Consensus 362 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~---l~ 432 (615)
+..-..+|...|++..|+.=++...+.. ..++..+.-+-..+...|+.+.++...++..+ |+.. .|-. +.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 6667777888888888877777666654 44555566667777788888888888877766 3321 2222 22
Q ss_pred HHH------HhcCChHHHHHHHHHHHHcCCCCCH--H---HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHH
Q 036661 433 AGC------ALNGEFVEALDLFHQMMELDLRPNR--V---TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYS 500 (615)
Q Consensus 433 ~~~------~~~~~~~~a~~~~~~~~~~~~~p~~--~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 500 (615)
..+ ...++|.++++..+...+. .|.. . .+..+-.++...+++.+|++...++. .+.|+ +.++-
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~ 345 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHH
Confidence 222 2356677777777777765 3442 2 33445556677778888888888777 44565 67777
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 036661 501 CMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
.-+.+|.-...+++|+.-|+++.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 77788888888888888888776
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=5.9e-06 Score=91.51 Aligned_cols=323 Identities=11% Similarity=-0.019 Sum_probs=199.3
Q ss_pred CchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC----CCC---c---c--cHHHHHHHHHhc
Q 036661 270 CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC----DRT---R---V--SWTAMISGYAQK 337 (615)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~---~---~--~~~~ll~~~~~~ 337 (615)
..|+.+.+..++..+.......++.........+...|+++++...+.... ..+ . . ....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345555555555544221112233333445556667888888888776541 111 1 1 112233445678
Q ss_pred CChhHHHHHHHHHHHCCCCCCH----HHHHHHHHhhcccchhhHHHHHHHHHHhc----CC-CCchHHHHHHHHHHHhcC
Q 036661 338 GDLDEALRLFFAMEAAGEVPDL----VTVLSMISGCGQSGALELGKWFDNYACSG----GL-KDNVMVCNALIDMYSKCG 408 (615)
Q Consensus 338 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g 408 (615)
|++++|...+++....-...+. .....+...+...|+++.|...+...... +. ......+..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999887653111121 23344555567789999998888877642 21 111234556677788899
Q ss_pred ChHHHHHHHhcCCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHhhcc
Q 036661 409 SIGDARELFYALPE-------K----TVVSWTTMIAGCALNGEFVEALDLFHQMMELD--LRPN--RVTFLAVLQACTHA 473 (615)
Q Consensus 409 ~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~ 473 (615)
+++.|...+++... + ....+..+...+...|++++|...+++..... ..+. ...+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999888776433 1 11234455666777899999999888876531 1222 23445566677889
Q ss_pred CchHHHHHHHHHHHHhhCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCC-C-CChh----hHHHHHHHHHHhC
Q 036661 474 GFLEKGWGYFNLMTKVYQVNPELNHY-----SCMADLLGRKGKLKEALDFVQSMPI-K-SDAG----IWGTLLCACKIHR 542 (615)
Q Consensus 474 ~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~~~~~ 542 (615)
|++++|...+...............+ ......+...|+.+.|..++..... . .... .+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999888875421111111111 1122445568899999999877651 1 1111 1345666778889
Q ss_pred ChhHHHHHHHHHhccCC------CCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 543 NIEIGEYVAYRLFELEP------HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 543 ~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
+.++|...++++++... .....+..++.+|.+.|+.++|.+.+.+..+..
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999887532 123467778899999999999999999887644
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=3.8e-08 Score=80.62 Aligned_cols=110 Identities=8% Similarity=-0.057 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCChhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661 480 WGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
..++++.. .+.|+. +..++..+...|++++|...|+... . +.+...+..++.++...|++++|...|++++++
T Consensus 13 ~~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45566666 335553 5567889999999999999999987 4 446778899999999999999999999999999
Q ss_pred CCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 558 EPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 558 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
+|+++..+..+|.++...|++++|++.+++..+..+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999886653
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=1.9e-07 Score=95.99 Aligned_cols=127 Identities=14% Similarity=0.001 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHH
Q 036661 460 RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLC 536 (615)
Q Consensus 460 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~ 536 (615)
...+..|.....+.|.+++|..+++... .+.|+. .....++.++.+.+++++|+..+++.. ..|+ ......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4444445555555555555555555554 223332 233344455555555555555555544 3332 223334444
Q ss_pred HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555543
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=5.3e-07 Score=94.24 Aligned_cols=199 Identities=12% Similarity=0.086 Sum_probs=164.2
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-H
Q 036661 391 KDNVMVCNALIDMYSKCGSIGDARELFYALPEK--------TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-V 461 (615)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~ 461 (615)
|.+...|-..|......++.++|+++.++.... -...|.+++..-...|.-+...++|+++.+- -|+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 556677788888888999999999999887651 2357888888777778888889999999874 343 5
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---hhhHHHHHHH
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLLCA 537 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~ 537 (615)
.|..|...|.+.+.+++|.++++.|.+.++ ....+|..+++.+.+..+-+.|.+++.++. .-|. .......+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 788889999999999999999999998766 667789999999999999999999998876 3333 3455556666
Q ss_pred HHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 538 CKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 538 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
-.+.|+.+.++.+|+..+...|.....|..+++.-.+.|+.+.++.+|+++...+..
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 678999999999999999999999999999999999999999999999999887654
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=1.1e-05 Score=78.60 Aligned_cols=266 Identities=13% Similarity=0.060 Sum_probs=169.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHH-HHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHH---
Q 036661 325 VSWTAMISGYAQKGDLDEALRLFFAMEAAG-EVPDLVTVL-SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNA--- 399 (615)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 399 (615)
..|..+...+...|+.+.+...+....... ..++..... .....+...|+++.|..+++...+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 356666677777788888777776655432 122332222 22334567789999999999988764 444444432
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCch
Q 036661 400 LIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFL 476 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 476 (615)
+.......+....+.+.+...... .......+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 222222345666677766653332 23345566678899999999999999999973 44456778888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHH------HHHHHHHHhCChhHH
Q 036661 477 EKGWGYFNLMTKVYQVNPEL--NHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWG------TLLCACKIHRNIEIG 547 (615)
Q Consensus 477 ~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~------~l~~~~~~~~~~~~A 547 (615)
++|..++++........|+. ..|..++..+...|++++|..++++.. ..|....+. .+..-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999988532222332 345578899999999999999999975 333112111 222333344544443
Q ss_pred HHH---HHHHhccCCCC--CCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 548 EYV---AYRLFELEPHS--AAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 548 ~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
.+. ........|.. ...-...+.++...|+.++|...++.+....
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333 22211111221 1222356788899999999999999987644
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=4.6e-07 Score=77.94 Aligned_cols=155 Identities=11% Similarity=0.136 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661 429 TTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR 508 (615)
Q Consensus 429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 508 (615)
..+-..+...|+-+....+....... ..-|......++....+.|++..|...+++... .-++|...|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555566666666666665554432 122334444466666667777777777777664 445666677777777777
Q ss_pred cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHH
Q 036661 509 KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRT 586 (615)
Q Consensus 509 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 586 (615)
.|++++|..-|.+.. ..-++...+.+...+.-.|+.+.|+.++..+....+.+..+-.+|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777776666654 333445566666666667777777777777776666666677777777777777777766654
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=1.1e-06 Score=86.04 Aligned_cols=219 Identities=9% Similarity=-0.047 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHH
Q 036661 357 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAG 434 (615)
Q Consensus 357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~ 434 (615)
|--..-..+...+...|-...|..+++++. .+..++.+|...|+..+|..+..+..+ |++..|..+++.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 333333445555666677777777776543 345567777777777777776654443 566677777766
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661 435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE 514 (615)
Q Consensus 435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 514 (615)
.....-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+- -+....+|-.+..+..+.++++.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHH
Confidence 66666666666666554332 1112222233467788888887776642 12345678888888889999999
Q ss_pred HHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 515 ALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 515 A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
|.+.|.... ..|+ ...|+.+..+|.+.|+-.+|...++++++-+-++..+|.+..-+..+.|.|++|.+.+.++.+-.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999888876 5554 56899999999999999999999999999888888899999889999999999999999887744
Q ss_pred c
Q 036661 593 V 593 (615)
Q Consensus 593 ~ 593 (615)
.
T Consensus 618 ~ 618 (777)
T KOG1128|consen 618 K 618 (777)
T ss_pred h
Confidence 4
No 113
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=3.2e-06 Score=78.90 Aligned_cols=178 Identities=11% Similarity=0.087 Sum_probs=117.8
Q ss_pred ChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661 409 SIGDARELFYALPE---KTVVSWTTMIAGCALNGEF--VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF 483 (615)
Q Consensus 409 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 483 (615)
++++++..++++.. .+..+|+.....+.+.++. ++++.+++++.+.+ +-|..+|.....++...|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35666666655543 2334555544444444542 56777777777753 334567777777777888888888888
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHhCC-CCC-ChhhHHHHHHHHHHh----CChhHHHHH
Q 036661 484 NLMTKVYQVNPELNHYSCMADLLGRK---GKL----KEALDFVQSMP-IKS-DAGIWGTLLCACKIH----RNIEIGEYV 550 (615)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~----~~~~~A~~~ 550 (615)
+++++. -+-+...|+....++.+. |.. ++++++..++. ..| +...|..+...+... ++..+|...
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 888753 123345566655555444 222 45666665554 344 566788777777663 455778899
Q ss_pred HHHHhccCCCCCCChHhHHHHHHccC------------------ChHHHHHHHHHHH
Q 036661 551 AYRLFELEPHSAAPYVEMANIYALGG------------------RWDGVANLRTMMK 589 (615)
Q Consensus 551 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 589 (615)
..++++.+|+++.++..|+++|.... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 99999999999999999999998643 3477888888884
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=1.3e-05 Score=88.68 Aligned_cols=326 Identities=12% Similarity=-0.010 Sum_probs=203.0
Q ss_pred HhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcC------CCC--hhHHHHHHHHHH
Q 036661 233 CTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGF------DLD--VSVINTLISMYS 304 (615)
Q Consensus 233 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 304 (615)
....|++..+..++..+.......+..........+...|+.+.+...+......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677776666666552111111122222223334566788888888877654311 111 122233345566
Q ss_pred hcCCHHHHHHHHhccCC----CCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHhhcc
Q 036661 305 KCGDIDSARFLFDGMCD----RTR----VSWTAMISGYAQKGDLDEALRLFFAMEAAGE---VP--DLVTVLSMISGCGQ 371 (615)
Q Consensus 305 ~~~~~~~a~~~~~~~~~----~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~ 371 (615)
..|+++.|...++.... .+. ...+.+...+...|++++|...+++...... .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999998877522 121 2345566677889999999999988764311 11 12344455667788
Q ss_pred cchhhHHHHHHHHHHh----cCCC--C-chHHHHHHHHHHHhcCChHHHHHHHhcCCC------C--ChHHHHHHHHHHH
Q 036661 372 SGALELGKWFDNYACS----GGLK--D-NVMVCNALIDMYSKCGSIGDARELFYALPE------K--TVVSWTTMIAGCA 436 (615)
Q Consensus 372 ~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~ 436 (615)
.|+++.|...+++... .+.. + ....+..+...+...|++++|...+++... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998887665 2221 1 223345566677788999999988887543 1 1234555667788
Q ss_pred hcCChHHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh----hHHHHHHHHH
Q 036661 437 LNGEFVEALDLFHQMMELD--LRPNRV--TF--LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL----NHYSCMADLL 506 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~ 506 (615)
..|+++.|...+++..... ...... .. ...+..+...|+.+.|...+...... . .... ..+..++.++
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHH
Confidence 8999999999998886521 111111 11 11223445578999999887775531 1 1111 1134677888
Q ss_pred HhcCChHHHHHHHHhCC-------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 507 GRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 507 ~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
...|++++|...+++.. ..++ ..+...+..++...|+.++|...+.+++++...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999999999998875 1111 224556667888999999999999999987754
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=8.2e-07 Score=84.69 Aligned_cols=246 Identities=12% Similarity=0.035 Sum_probs=158.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 036661 334 YAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDA 413 (615)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 413 (615)
+.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345555666655555555442 2333445555555555555555555555555544 44555556666666666666666
Q ss_pred HHHHhcCCCCCh-HHHHHHH---------HHHHhcCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661 414 RELFYALPEKTV-VSWTTMI---------AGCALNGEFVEALDLFHQM-MELDLRPNRVTFLAVLQACTHAGFLEKGWGY 482 (615)
Q Consensus 414 ~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 482 (615)
.+.++.-....+ ..|.... ..+..........++|-++ ...+..+|+.....|.-.|--.|++++|.+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 666554322100 0000000 1111112233444455444 4455447777788888888889999999999
Q ss_pred HHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh-hHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661 483 FNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 483 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 559 (615)
|+.+. .+.|+ ..+|+.|+..++...+.++|+..|++++ .+|... ++..++-+|...|.+++|.+++=.++.+.+
T Consensus 453 f~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99998 44565 5789999999999999999999999987 777644 777888999999999999999999998776
Q ss_pred CC----------CCChHhHHHHHHccCChHHHHHH
Q 036661 560 HS----------AAPYVEMANIYALGGRWDGVANL 584 (615)
Q Consensus 560 ~~----------~~~~~~l~~~~~~~g~~~~A~~~ 584 (615)
.+ -.+|..|-.++.-.++.|-+.++
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 51 13677777777777777755444
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.3e-05 Score=69.04 Aligned_cols=250 Identities=12% Similarity=0.038 Sum_probs=159.1
Q ss_pred HHHhcCCHHHHHHHHhccC-C-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHH-
Q 036661 302 MYSKCGDIDSARFLFDGMC-D-RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELG- 378 (615)
Q Consensus 302 ~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a- 378 (615)
-+.-.|.+..++..-.... . .+...-..+.++|...|.+..... ++... -.|....+..+.......++.+.-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHHHH
Confidence 3444566666665554432 1 334444556677777776654332 22222 244445555444444444444333
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036661 379 KWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP 458 (615)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 458 (615)
.++.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- -
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---d 167 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---D 167 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 3444555554444444444444566888999999999988733 3333333345566777889999999999863 3
Q ss_pred CHHHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 036661 459 NRVTFLAVLQACTH----AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWG 532 (615)
Q Consensus 459 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~ 532 (615)
+..|.+.|..++.+ .+.+.+|.-+|+++.. ..+|+..+.+..+.++...|++++|..++++.. ...++.++.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 45677777766653 4568899999999985 467888888888888889999999999998887 334566666
Q ss_pred HHHHHHHHhC-ChhHHHHHHHHHhccCCCCC
Q 036661 533 TLLCACKIHR-NIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 533 ~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~ 562 (615)
.++-+....| +.+...+.+.++....|.++
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 6666555566 44556677778877788753
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.71 E-value=1.6e-07 Score=75.21 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
....-.++..+...|++++|.++|+-.. .+-+...|..|+.++...|++++|+..|.++..++|++|..+..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3445567778889999999999999886 44466788999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 036661 574 LGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 574 ~~g~~~~A~~~~~~~~~~~ 592 (615)
..|+.+.|++.|+......
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887755
No 118
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=1.3e-06 Score=81.46 Aligned_cols=188 Identities=10% Similarity=0.064 Sum_probs=141.0
Q ss_pred HHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc--hH
Q 036661 404 YSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNG-EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF--LE 477 (615)
Q Consensus 404 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~ 477 (615)
+...++.++|..+..++... +..+|+.-..++...| ++++++..++++.+.+ +-+..+|+.....+.+.|. .+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 44556778888888876652 4456776666666777 6799999999999873 3344567766656666665 36
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh---CC----hhHHH
Q 036661 478 KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---RN----IEIGE 548 (615)
Q Consensus 478 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~----~~~A~ 548 (615)
+++.+++++.+ .-+-+..+|.....++.+.|++++|++.++++. ...+..+|........+. |. .++.+
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 78888888884 234457789989999999999999999999987 344566787777666544 22 25788
Q ss_pred HHHHHHhccCCCCCCChHhHHHHHHc----cCChHHHHHHHHHHHhcCcc
Q 036661 549 YVAYRLFELEPHSAAPYVEMANIYAL----GGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 594 (615)
....++++.+|+|..+|..++.++.. .++..+|.+...+..+.++.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 88899999999999999999999988 35567798888887765543
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=6e-07 Score=87.89 Aligned_cols=189 Identities=17% Similarity=0.176 Sum_probs=161.5
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661 389 GLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ 468 (615)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 468 (615)
+.+|--..-..+...+...|-...|..+++++ ..|.-++.+|...|+..+|..+..+..+. +|++..|..+++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 44565566677888999999999999999875 45888899999999999999999998884 899999999999
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhH
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 546 (615)
......-+++|.++.+..... .-..++....+.+++.++.+.|+.-. .+-...+|..+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888899999998877642 11223344456899999999998865 34467799999999999999999
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 547 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
|.+.|...+.++|++...|+++.-+|.+.|+-.+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998876
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=1.7e-06 Score=74.58 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 036661 398 NALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG 474 (615)
Q Consensus 398 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 474 (615)
..+-..+...|+-+....+...... .+.......+....+.|++..|+..+++..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3344445555555555555544322 233344445666666666666666666666542 445556666666666666
Q ss_pred chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661 475 FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAY 552 (615)
Q Consensus 475 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~ 552 (615)
+.+.|..-|.+..+-. +-+....+.+.-.|.-.|+++.|..++.... ..+ +..+...+.......|+++.|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6666666666665321 1223345555556666666666666666554 222 44455555555566666666666554
Q ss_pred HH
Q 036661 553 RL 554 (615)
Q Consensus 553 ~~ 554 (615)
+-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=2.3e-06 Score=74.30 Aligned_cols=153 Identities=8% Similarity=0.084 Sum_probs=115.5
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHH
Q 036661 401 IDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGW 480 (615)
Q Consensus 401 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 480 (615)
+..|...|+++.+....+.+..+. ..+...++.+++...+++..+.+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888777655543332221 01123567788888888888764 556788999999999999999999
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661 481 GYFNLMTKVYQVNPELNHYSCMADLL-GRKGK--LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLF 555 (615)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 555 (615)
..|++..+. .+.+...+..++.++ ...|+ .++|.+++++.. ..| +...+..++..+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999852 233567788888864 67777 599999999987 444 56688888899999999999999999999
Q ss_pred ccCCCCCCC
Q 036661 556 ELEPHSAAP 564 (615)
Q Consensus 556 ~~~p~~~~~ 564 (615)
+.+|.+..-
T Consensus 172 ~l~~~~~~r 180 (198)
T PRK10370 172 DLNSPRVNR 180 (198)
T ss_pred hhCCCCccH
Confidence 999875543
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=2.7e-07 Score=75.47 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL 574 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 574 (615)
.....++..+...|++++|.+.++++. .+.+...+..++.++...|++++|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 334455566666666666666666654 223445666666666677777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhcCc
Q 036661 575 GGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 575 ~g~~~~A~~~~~~~~~~~~ 593 (615)
.|++++|.+.+++..+...
T Consensus 98 ~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 98 LGEPESALKALDLAIEICG 116 (135)
T ss_pred cCCHHHHHHHHHHHHHhcc
Confidence 7777777777776666543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=2.1e-05 Score=74.04 Aligned_cols=150 Identities=18% Similarity=0.151 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHH
Q 036661 425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCM 502 (615)
Q Consensus 425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 502 (615)
...+-.....+...|++++|+..++.++.. .|+.. .+......+.+.++..+|.+.++++.. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 334444455566788999999999998886 56554 445556688899999999999999884 3566 4455668
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHH
Q 036661 503 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDG 580 (615)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 580 (615)
+.+|.+.|++++|..+++... .+.++..|..|..+|...|+..++... .+..|.-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 889999999999999998876 445677889999999999888776644 4567778888888
Q ss_pred HHHHHHHHHhcCcccC
Q 036661 581 VANLRTMMKRNQVKKF 596 (615)
Q Consensus 581 A~~~~~~~~~~~~~~~ 596 (615)
|+..+....++.-.-+
T Consensus 444 A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 444 AIIFLMRASQQVKLGF 459 (484)
T ss_pred HHHHHHHHHHhccCCc
Confidence 8888888877664333
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=4e-06 Score=71.60 Aligned_cols=169 Identities=13% Similarity=0.123 Sum_probs=118.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC--CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPE--KTV-VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA 473 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 473 (615)
|..++-+....|+.+.|...++.+.. |+. ..-..-..-+-..|++++|+++++.+.+.+ +.|..++..-+...-.+
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34444455556666666666665544 221 111111122334688899999999998875 44556776666666777
Q ss_pred CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHh---CChhHHH
Q 036661 474 GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH---RNIEIGE 548 (615)
Q Consensus 474 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---~~~~~A~ 548 (615)
|+.-+|++-+....+ .+..|...|..+.+.|...|++++|.-.++++. .+| ++..+..+...+.-. .+.+-|.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888888886 567888999999999999999999999999987 555 444556666655443 3788899
Q ss_pred HHHHHHhccCCCCCCChHhH
Q 036661 549 YVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~l 568 (615)
++|.++++++|.+...++.+
T Consensus 212 kyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHhChHhHHHHHHH
Confidence 99999999999766555543
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.7e-06 Score=72.57 Aligned_cols=167 Identities=12% Similarity=0.112 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD 504 (615)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 504 (615)
..|..++-+....|+.+.|...++++... + |.+. ....-..-+...|.+++|.++++.+..+ -+.+..++..-+.
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHH
Confidence 35666777778889999999999999987 3 5543 3332233456788999999999999964 2445566777777
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC---ChH
Q 036661 505 LLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG---RWD 579 (615)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 579 (615)
+.-..|+.-+|++-+.+.. +..|...|..+...|...|++++|.=-+++++-++|.++-.+..+++++.-.| ++.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 7778899889998888876 67789999999999999999999999999999999999999999999988766 578
Q ss_pred HHHHHHHHHHhcCcccC
Q 036661 580 GVANLRTMMKRNQVKKF 596 (615)
Q Consensus 580 ~A~~~~~~~~~~~~~~~ 596 (615)
-|+++|.+.++......
T Consensus 209 ~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHhChHhH
Confidence 89999999988776433
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=5.5e-06 Score=77.80 Aligned_cols=124 Identities=14% Similarity=0.032 Sum_probs=106.0
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCCh
Q 036661 467 LQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNI 544 (615)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~ 544 (615)
.-.+...|++++|+..++.+.+. .+-+...+....+.+.+.++.++|.+.++++. ..|+ ...+..+..++.+.|+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 33456679999999999999863 33445555667799999999999999999997 6666 56778889999999999
Q ss_pred hHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 545 EIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 545 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
.+|+..++.....+|++|..|..|+.+|...|+..+|...+-+.....
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999887765533
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=2.5e-06 Score=77.46 Aligned_cols=184 Identities=13% Similarity=-0.028 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCC-C-chHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChH---H
Q 036661 356 VPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK-D-NVMVCNALIDMYSKCGSIGDARELFYALPE--K-TVV---S 427 (615)
Q Consensus 356 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~ 427 (615)
......+..+...+...|+++.|...++.+...... | ....+..+..++.+.|+++.|...++++.+ | +.. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567778888899999999999999998875421 1 224677788999999999999999998865 2 222 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhH
Q 036661 428 WTTMIAGCALN--------GEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNH 498 (615)
Q Consensus 428 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 498 (615)
+..+..++... |++++|.+.++++... .|+.. ....+..... .. .... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HH
Confidence 66666666654 7889999999999986 45542 2222211100 00 0000 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
...++..+.+.|++++|...+++.. ..| ....+..++.++.+.|++++|...++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1246677888999999999888875 222 2457788888899999999999988887766553
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=1.9e-05 Score=82.28 Aligned_cols=233 Identities=9% Similarity=0.079 Sum_probs=131.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhccC--CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 036661 292 DVSVINTLISMYSKCGDIDSARFLFDGMC--DR-TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISG 368 (615)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 368 (615)
+...+..|+..+...+++++|..+.+... .| ....|-.+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 44556677777777777777777776542 22 233344444455555554444333 22233
Q ss_pred hcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHH
Q 036661 369 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEAL 445 (615)
Q Consensus 369 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 445 (615)
.....++..+..+...+.+. ..+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 33333343333344444332 23334566667777777777777777776655 3556667777777666 777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 036661 446 DLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIK 525 (615)
Q Consensus 446 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (615)
+++.+.+.. +...+++..+.++|.++.. ..+.+...+..+.+.....-.. .
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~------------~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF------------T 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc------------c
Confidence 776666653 4444566666666666663 2222222332222222211001 1
Q ss_pred CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 526 SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 526 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
--..++.-+...|...++++++..+++.+++.+|.|..+...++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 112344445566667778888888888888888888888888877776
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.53 E-value=1.2e-06 Score=83.20 Aligned_cols=124 Identities=12% Similarity=0.117 Sum_probs=101.9
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCAC 538 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 538 (615)
.....|+..+...++++.|..+++++.+. .|+. ...+++.+...++..+|.+++.+.. ..| +...+...+..+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556666777788889999999988854 3553 4457788888888888988888876 344 555666677788
Q ss_pred HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
...++++.|+++.+++.++.|++-.+|..|+.+|...|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998775
No 130
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=1.9e-05 Score=83.16 Aligned_cols=227 Identities=11% Similarity=0.106 Sum_probs=163.7
Q ss_pred CHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCC---chHHHHHHHHHHHhcCChHHHHHHHhcCCC-CC-hHHHHHH
Q 036661 358 DLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKD---NVMVCNALIDMYSKCGSIGDARELFYALPE-KT-VVSWTTM 431 (615)
Q Consensus 358 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 431 (615)
....|...|......++.+.|.++.+++.. -++.- -..+|.++++.-..-|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 345566677777788888888888887765 22211 124566677776777777888888888776 23 4578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHh
Q 036661 432 IAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGR 508 (615)
Q Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 508 (615)
...|.+.+.+++|.++++.|.+. +.-....|...+..+.++++.+.|..++.++.+. -|. .......+.+-.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhh
Confidence 88899999999999999999886 3455578888888888988889999999988853 233 3455666777778
Q ss_pred cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccC--CCCCCChHhHHHHHH-ccCChHHHHH
Q 036661 509 KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELE--PHSAAPYVEMANIYA-LGGRWDGVAN 583 (615)
Q Consensus 509 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~-~~g~~~~A~~ 583 (615)
.|+.+.+..+|+... .+.....|..++..-.++|+.+.++.+|++++.+. |..+..++..---|. ..|+-+.+..
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 899999999998887 33356789999999999999999999999998754 555554444433333 4466555544
Q ss_pred HHHHH
Q 036661 584 LRTMM 588 (615)
Q Consensus 584 ~~~~~ 588 (615)
+-.++
T Consensus 1693 VKarA 1697 (1710)
T KOG1070|consen 1693 VKARA 1697 (1710)
T ss_pred HHHHH
Confidence 44433
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=1.9e-05 Score=81.50 Aligned_cols=137 Identities=10% Similarity=0.025 Sum_probs=105.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHH
Q 036661 424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSC 501 (615)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 501 (615)
++..+..|.....+.|.+++|..+++...+. .|+. .....+..++.+.+++++|+..+++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 4667777888888888888888888888885 6665 4667777788888888888888888874 2444 456667
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY 565 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 565 (615)
++.++...|++++|.++|+++. ..|+ ...+..+..++...|+.++|...|+++++...+....|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7788888888888888888887 4444 56778888888888888888888888888765544443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=3.8e-06 Score=68.65 Aligned_cols=115 Identities=10% Similarity=-0.002 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 036661 447 LFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-- 523 (615)
Q Consensus 447 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 523 (615)
.++++... .|+. .....+...+...|++++|...++.+... .+.+...+..++.++...|++++|...+++..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555554 4543 45666777888889999999999888753 24456778888899999999999999998875
Q ss_pred CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661 524 IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY 565 (615)
Q Consensus 524 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 565 (615)
.+.+...+..+..++...|++++|...++++++.+|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 344566777888889999999999999999999999876543
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.0017 Score=62.28 Aligned_cols=173 Identities=12% Similarity=0.040 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHh
Q 036661 340 LDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD-NVMVCNALIDMYSKCGSIGDARELFY 418 (615)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 418 (615)
.+.....++++...-..--..+|...+....+..-+..|..+|..+.+.+..+ .+.+.++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45566666666543322223456677777777888889999999998877666 7788888888776 467888999998
Q ss_pred cCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhC--
Q 036661 419 ALPE--K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ-- 491 (615)
Q Consensus 419 ~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 491 (615)
--.. + ++.--...+.-+...|+-..+..+|++....++.|+. ..|..++.--..-|+...+.++-++....+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6544 3 3444456677777888889999999999988777765 5899999988889999999988888775443
Q ss_pred CCCChhHHHHHHHHHHhcCChH
Q 036661 492 VNPELNHYSCMADLLGRKGKLK 513 (615)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~ 513 (615)
..+....-..+++.|.-.+.+.
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 2222223333455555444443
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=4.2e-06 Score=69.00 Aligned_cols=115 Identities=16% Similarity=0.033 Sum_probs=62.2
Q ss_pred cCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh----hhHHHHHHHHHHhCChhH
Q 036661 473 AGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 473 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~ 546 (615)
.++...+...++.+.+.++-.|- ......++..+...|++++|...|+.+. ..|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555556666543211110 1223334455566666666666666655 22332 133344555666666666
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 547 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
|+..++.. .-.+-.+..+..+|++|.+.|++++|++.|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666552 223334556666777777777777777777653
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=3.1e-07 Score=53.08 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=21.3
Q ss_pred cCCCccchHHHHHHHHHccCCHHHHHHHHHhc
Q 036661 185 GVDADVSVCNTWISAYAKCNDLKMAELVFRGI 216 (615)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 216 (615)
|+.||..+|++++++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 136
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=8.2e-07 Score=51.32 Aligned_cols=32 Identities=41% Similarity=0.663 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661 389 GLKDNVMVCNALIDMYSKCGSIGDARELFYAL 420 (615)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 420 (615)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.005 Score=62.90 Aligned_cols=158 Identities=17% Similarity=0.117 Sum_probs=89.3
Q ss_pred HHHHHHhhcccchhh---HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH--HHH-HHHHHH
Q 036661 362 VLSMISGCGQSGALE---LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV--SWT-TMIAGC 435 (615)
Q Consensus 362 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~-~l~~~~ 435 (615)
.+.++..+.+.++.. +|.-+++...... +.+..+--.+++.|.-.|-+..|.++|+.+.-.++. |.. .+...+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence 456677787777665 3344444443333 455666677889999999999999999987654432 121 233444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHH---HHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 036661 436 ALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGW---GYFNLMTKVYQVNPELNHYSCMADLLGRKGK 511 (615)
Q Consensus 436 ~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 511 (615)
...|++..+...++..... +..+. .+-..+..+|. .|.+.+.. ..=+++..+ .-.....+-+..+..+...++
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence 5567777777777665543 11111 23333333443 34444333 333333321 111122344556677778888
Q ss_pred hHHHHHHHHhCC
Q 036661 512 LKEALDFVQSMP 523 (615)
Q Consensus 512 ~~~A~~~~~~~~ 523 (615)
.+.=...+..+.
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 888777777765
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.33 E-value=4.3e-06 Score=66.64 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC---CCChHhHHH
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS---AAPYVEMAN 570 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 570 (615)
+..++..+.+.|++++|.+.++++. ..|+ ...+..++.++.+.|++++|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 4445555666666666666666554 2222 2344456666666677777777777777666664 345666677
Q ss_pred HHHccCChHHHHHHHHHHHhcCc
Q 036661 571 IYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 571 ~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
++...|++++|.+.++++.+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCc
Confidence 77777777777777777666554
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.32 E-value=8e-07 Score=62.50 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=60.1
Q ss_pred ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC-ChHHHHHHHHHHHhcC
Q 036661 527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG-RWDGVANLRTMMKRNQ 592 (615)
Q Consensus 527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 592 (615)
+...|..++..+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 35678888999999999999999999999999999999999999999999 7999999999887643
No 140
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.32 E-value=9.6e-07 Score=61.16 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=53.2
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
++..+...|++++|+..++++++.+|+++.++..++.++...|++++|+.+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 566788899999999999999999999999999999999999999999999999887654
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.32 E-value=3.7e-06 Score=63.92 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG 576 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 576 (615)
+..++..+...|++++|...++++. ..| +...+..++..+...|++++|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556777888888888888888875 333 34567777888888899999999999999999998888999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 036661 577 RWDGVANLRTMMKRNQ 592 (615)
Q Consensus 577 ~~~~A~~~~~~~~~~~ 592 (615)
++++|.+.+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876544
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.00026 Score=74.12 Aligned_cols=170 Identities=8% Similarity=0.073 Sum_probs=94.8
Q ss_pred CCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHH
Q 036661 221 RTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI 300 (615)
Q Consensus 221 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 300 (615)
.+...|..|+..+...+++++|.++.+...+. .|+...+ |-.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~----------------------------------yy~~G 72 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISA----------------------------------LYISG 72 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceeh----------------------------------HHHHH
Confidence 35667778888888888888888888765553 2443322 22222
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHH
Q 036661 301 SMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKW 380 (615)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 380 (615)
..+...++.+++..+ .++.......++.-+.-+...|.+. .-+...+..+..+|.+.|+.+++..
T Consensus 73 ~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~ 137 (906)
T PRK14720 73 ILSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKG 137 (906)
T ss_pred HHHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHH
Confidence 233344443332222 2233333333343333333333332 2233355566666666677777777
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661 381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL 454 (615)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 454 (615)
+++++.+.. +.++.+.|.+...|... ++++|.+++.+. +..+...+++..+.++|.++...
T Consensus 138 ~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 138 VWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 777766666 55666677777777766 777777665432 33355556666666666666664
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=4.9e-05 Score=62.64 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh--hHHHHH
Q 036661 428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNR---VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL--NHYSCM 502 (615)
Q Consensus 428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 502 (615)
|..++..+ ..++...+...++.+.+.. +.+. .....+...+...|++++|...|+.+... ...|+. .....+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44455554 4788888888888888863 2331 23444567788889999999999998864 222221 244457
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661 503 ADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLF 555 (615)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 555 (615)
+.++...|++++|+..++... ....+..+...+..+...|+.++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888889999999999998865 23344566777888999999999999998864
No 144
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.27 E-value=0.002 Score=59.13 Aligned_cols=291 Identities=19% Similarity=0.171 Sum_probs=192.2
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHhcc---CCCCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 036661 296 INTLISMYSK--CGDIDSARFLFDGM---CDRTRVSWTAMISGYA--QKGDLDEALRLFFAMEAAGEVPDL--VTVLSMI 366 (615)
Q Consensus 296 ~~~l~~~~~~--~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll 366 (615)
|..|-.++.. .|+-..|.+.-.+. ...|......++.+-. -.|++++|.+-|+.|... |.. .-...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 4445444433 46666666665543 3445555555555443 478999999999988753 222 2233444
Q ss_pred HhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChH--HHHHHHHHHH---
Q 036661 367 SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KTVV--SWTTMIAGCA--- 436 (615)
Q Consensus 367 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~l~~~~~--- 436 (615)
-.-.+.|+.+.|..+-+..-..- +.-.......+...+..|+++.|+++++.-.. ++.. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44556788888888777665543 33445677888899999999999999986443 3432 2222332211
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEA 515 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 515 (615)
-..+...|...-.+..+ +.|+.. .-.....++.+.|+..++-.+++.+-+. .|-+.++. ...+.+.|+ .+
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~--lY~~ar~gd--ta 311 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIAL--LYVRARSGD--TA 311 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHH--HHHHhcCCC--cH
Confidence 23456777777666666 477764 4555677899999999999999998853 45554442 223345554 44
Q ss_pred HHHHHhCC----CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc-CChHHHHHHHHHHH
Q 036661 516 LDFVQSMP----IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG-GRWDGVANLRTMMK 589 (615)
Q Consensus 516 ~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 589 (615)
..-+++.. .+| +.........+....|++..|..-.+.+.+..|. ..+|..|+++-... |+..+++..+-+..
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 44444432 334 4556677778888899999999999999999998 67888999988766 99999999998777
Q ss_pred hcCcccCCceeEE
Q 036661 590 RNQVKKFPGQSLV 602 (615)
Q Consensus 590 ~~~~~~~~~~~~~ 602 (615)
... .+|.++-.
T Consensus 391 ~AP--rdPaW~ad 401 (531)
T COG3898 391 KAP--RDPAWTAD 401 (531)
T ss_pred cCC--CCCccccc
Confidence 654 44554433
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.25 E-value=3.9e-07 Score=66.94 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=41.7
Q ss_pred CChHHHHHHHHhCC-CCC---ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661 510 GKLKEALDFVQSMP-IKS---DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR 585 (615)
Q Consensus 510 g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 585 (615)
|++++|+.+++++. ..| +...+..++.++.+.|++++|..++++ .+.+|.++.....+|.+|...|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44455555555443 112 233444455556666666666666666 5555555555556666666666666666666
Q ss_pred HH
Q 036661 586 TM 587 (615)
Q Consensus 586 ~~ 587 (615)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.23 E-value=2.9e-06 Score=81.35 Aligned_cols=109 Identities=9% Similarity=-0.045 Sum_probs=88.2
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhC
Q 036661 465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHR 542 (615)
Q Consensus 465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 542 (615)
.....+...|++++|++.|+++.+. .+.+...|..++.+|.+.|++++|+..++++. ..| +...+..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3455677789999999999999853 23345678888899999999999999999987 444 5667888888999999
Q ss_pred ChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661 543 NIEIGEYVAYRLFELEPHSAAPYVEMANIYALG 575 (615)
Q Consensus 543 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 575 (615)
++++|+..++++++++|+++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999888777776665444
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=4.6e-05 Score=72.67 Aligned_cols=125 Identities=17% Similarity=0.157 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 036661 395 MVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG 474 (615)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 474 (615)
.....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445667777788899999999999998777777788899988899999999999998762 335566666677888999
Q ss_pred chHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 475 FLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 475 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
+++.|+++.+++.. ..|+ ..+|..|+.+|...|++++|+-.++.++
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999984 4565 5689999999999999999999999987
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00024 Score=61.51 Aligned_cols=246 Identities=11% Similarity=0.068 Sum_probs=157.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 036661 331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI 410 (615)
Q Consensus 331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (615)
++-+.-.|.+..++..-...... +.+...-.-+-++|...|+..... ..+.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 45566677777777655544332 133333334445555555543322 1222222 33333444444433334443
Q ss_pred HHH-HHHHhcCCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHH
Q 036661 411 GDA-RELFYALPEK----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNL 485 (615)
Q Consensus 411 ~~A-~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 485 (615)
+.- .++.+.+..+ +......-...|+..+++++|++..+.... .+ ....=...+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE--~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LE--AAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2333333332 223333345668899999999998877321 22 222224456677889999999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661 486 MTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 486 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 559 (615)
|.. + -+-.+.+.|+.++.+ .++..+|.-+|+++. ..|...+.+..+.++...|++++|+.+++.++..+|
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 984 2 334566666666654 467899999999997 678888899999999999999999999999999999
Q ss_pred CCCCChHhHHHHHHccCChHHHH-HHHHHHHhcC
Q 036661 560 HSAAPYVEMANIYALGGRWDGVA-NLRTMMKRNQ 592 (615)
Q Consensus 560 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 592 (615)
++|.++.++.-+-...|+-+++. +.+.++....
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 99999999998888889876654 4555555443
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=3.3e-06 Score=74.26 Aligned_cols=110 Identities=13% Similarity=0.065 Sum_probs=90.2
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCC
Q 036661 467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRN 543 (615)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~ 543 (615)
..-+.+.+++.+|+..|.+++ .+.|+ ...|..-+.+|.+.|.++.|++-.+... ..|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 556677899999999999998 45555 4455667889999999999999998887 5554 4589999999999999
Q ss_pred hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChH
Q 036661 544 IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWD 579 (615)
Q Consensus 544 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 579 (615)
+++|++.|+++++++|++......|-.+-...+..+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999877777766666666555
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.5e-05 Score=69.43 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=87.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh---CChhHHHHHHHHHhccCCCCCCChHh
Q 036661 493 NPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---RNIEIGEYVAYRLFELEPHSAAPYVE 567 (615)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~ 567 (615)
+-|...|..|+.+|...|+...|..-|.+.. ..+++..+..+..++..+ ....++..++++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4456788888888888888888888888775 444566666666665432 25678999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCcccCCcee
Q 036661 568 MANIYALGGRWDGVANLRTMMKRNQVKKFPGQS 600 (615)
Q Consensus 568 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 600 (615)
|+..+...|++.+|...|+.|++.....+|..+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999998887777544
No 151
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.0071 Score=58.20 Aligned_cols=211 Identities=14% Similarity=0.113 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC---ChHHHHHHHhcCCC----CChHHHHHHHHHHHhcCChHHHHHH
Q 036661 375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG---SIGDARELFYALPE----KTVVSWTTMIAGCALNGEFVEALDL 447 (615)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~ 447 (615)
.+++..+++..+..-...+..+|..+.+---..- ..+.....++++.. .-..+|-.++..-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566665554333334444444433221111 24444555554443 2234677788888888889999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---
Q 036661 448 FHQMMELDLRP-NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--- 523 (615)
Q Consensus 448 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 523 (615)
|.+..+.+..+ .....+.++.-++ +++..-|.++|+.=.+.+|-.| .--...++.+...++-..|..+|++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988777 5567777777666 4788999999998877554333 344567788889999999999999987
Q ss_pred CCCC--hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC----CChHhHHHHHHccCChHHHHHHHHHH
Q 036661 524 IKSD--AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA----APYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 524 ~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
..|+ ...|..++.--..-|+...+.++-++.....|.+- ..-....+-|.-.+.+.--..-++.+
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 2333 35888888888889999999999888877666321 22334556677677665544444433
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=1.1e-05 Score=71.19 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=80.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCC
Q 036661 433 AGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGK 511 (615)
Q Consensus 433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 511 (615)
.-+++.++|.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++-.+..+ .+.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 44678899999999999999962 3455677777889999999999998888877 44555 5789999999999999
Q ss_pred hHHHHHHHHhCC-CCCChhhHHH
Q 036661 512 LKEALDFVQSMP-IKSDAGIWGT 533 (615)
Q Consensus 512 ~~~A~~~~~~~~-~~p~~~~~~~ 533 (615)
+++|.+.|++.. ..|+..+|..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999988 7887665543
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.1e-05 Score=70.30 Aligned_cols=164 Identities=11% Similarity=0.068 Sum_probs=108.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh-------------HH
Q 036661 433 AGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN-------------HY 499 (615)
Q Consensus 433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~ 499 (615)
.++.-.|++++|...--...+.+ ..+......-..++-..++.+.+...|++.. ...|+-. .+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 34556788888887776666542 2222222222334555677888888888776 3445432 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCCC-----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 500 SCMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
..=+.-..+.|++.+|.+.+.+.. ..|+ ...|........+.|+..+|+.--+.+++++|.-...|...++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 222333457788888888888876 4443 3445555566677888888888888888888888888888888888
Q ss_pred ccCChHHHHHHHHHHHhcCcccCCcee
Q 036661 574 LGGRWDGVANLRTMMKRNQVKKFPGQS 600 (615)
Q Consensus 574 ~~g~~~~A~~~~~~~~~~~~~~~~~~~ 600 (615)
..++|++|.+.+++..+......+..+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~e~r~~ 359 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDCEIRRT 359 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHH
Confidence 888888888888888765544444333
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.17 E-value=0.012 Score=60.17 Aligned_cols=520 Identities=12% Similarity=0.035 Sum_probs=252.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH--HhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhH
Q 036661 30 VDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKAC--AKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDC 107 (615)
Q Consensus 30 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 107 (615)
...+++.+|+....++.+.. |+. .|..++.++ .+.|+.++|..+++.....+. .|..+...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 45677888888888877643 332 345555554 577888888888777766653 377788888888888888888
Q ss_pred HHHhhccCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcC-C---------hhHHH
Q 036661 108 AYKLFDKMPD--RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAK-H---------LSLLK 175 (615)
Q Consensus 108 a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~---------~~~a~ 175 (615)
|..++++... |+..-...+.-+|.+.+.+.+-.+.--+|-+. .+-+...|=++++...+.. . ...|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 8888888775 44334444455666666654433332222221 2223333333444333221 1 12233
Q ss_pred HHHHHHHHhc-CCCccchHHHHHHHHHccCCHHHHHHHHH-hcccCCC--CcchHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661 176 SVHSFGIHIG-VDADVSVCNTWISAYAKCNDLKMAELVFR-GIEEGLR--TVVSWNSIIGGCTYGDKFDDSLNFYRHMIY 251 (615)
Q Consensus 176 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 251 (615)
+..+.+.+.+ ...+..-.......+...|++++|..++. ...+..+ +...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444433 11111112222344456778888888883 2322222 223333455667777888888888888887
Q ss_pred CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcccHHHH
Q 036661 252 DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDR-TRVSWTAM 330 (615)
Q Consensus 252 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l 330 (615)
.| +|. |...+.. +++ +.+....++...- +...+..+...+..++.... ...+|-+-
T Consensus 255 k~--~Dd--y~~~~~s------------v~k-lLe~~~~~~a~~~------~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~ 311 (932)
T KOG2053|consen 255 KG--NDD--YKIYTDS------------VFK-LLELLNKEPAEAA------HSLSKSLDECIEKAQKNIGSKSRGPYLAR 311 (932)
T ss_pred hC--Ccc--hHHHHHH------------HHH-HHHhcccccchhh------hhhhhhHHHHHHHHHHhhcccccCcHHHH
Confidence 76 343 2222211 111 1111111111111 11122233333333222211 22334444
Q ss_pred HHHHHh---cCChhHHHHHHHHHHHCCCCC-------------CHHHHHHHHHhhcccc-hhhHHHHHHHHHH-------
Q 036661 331 ISGYAQ---KGDLDEALRLFFAMEAAGEVP-------------DLVTVLSMISGCGQSG-ALELGKWFDNYAC------- 386 (615)
Q Consensus 331 l~~~~~---~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~------- 386 (615)
+..+.+ -|+.+++...|-+- -|..| +......++..+.... +.....+.+..-.
T Consensus 312 lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~r 389 (932)
T KOG2053|consen 312 LELDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLR 389 (932)
T ss_pred HHHHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHH
Confidence 444433 35555544433221 11111 1111122232222211 1111111111100
Q ss_pred hcC--CCCchHHHHHH----HHHHHhcCChHHHHHHHhcCCC----C-Ch---HHHHHHHHHHHhcCChH---HHHHHHH
Q 036661 387 SGG--LKDNVMVCNAL----IDMYSKCGSIGDARELFYALPE----K-TV---VSWTTMIAGCALNGEFV---EALDLFH 449 (615)
Q Consensus 387 ~~~--~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~----~-~~---~~~~~l~~~~~~~~~~~---~a~~~~~ 449 (615)
-.| ...+.....++ +..|.+. .++=+.+.. + +. -+.+.|+..+.+.++.. +|+-+++
T Consensus 390 l~G~~~~l~ad~i~a~~~kl~~~ye~g------ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE 463 (932)
T KOG2053|consen 390 LLGLYEKLPADSILAYVRKLKLTYEKG------LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLE 463 (932)
T ss_pred HhhccccCChHHHHHHHHHHHHHHhcc------ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 001 01111111111 1111110 000000100 1 11 24567778888887765 4555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC
Q 036661 450 QMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSD 527 (615)
Q Consensus 450 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~ 527 (615)
...... +.|..+-..+++.|.-.|-...|.++|+.+.-+ .+..|.-.| .+...+...|++..+...++... ...+
T Consensus 464 ~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkfy~~~ 540 (932)
T KOG2053|consen 464 NGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKFYDSS 540 (932)
T ss_pred HHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchH-HHHHHHHhcccchhHHHHHHHHHHHHhhh
Confidence 555542 344456677788888889899999988887543 555554333 23455666788888877777654 1111
Q ss_pred -hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 528 -AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 528 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
..+-..+..+ .+.|.+.+..++..---+++-. -..+-......+...++.++-...+..|.
T Consensus 541 ~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 541 LKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 1222333333 4667777766654433333221 12233345566667777777777776665
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.15 E-value=0.00021 Score=58.15 Aligned_cols=152 Identities=8% Similarity=-0.041 Sum_probs=111.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036661 438 NGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALD 517 (615)
Q Consensus 438 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 517 (615)
.=|++...+-..+-.+ ..|+...-..|..+..+.|++.+|...|++...- -+..|..+...+.++....+++.+|..
T Consensus 69 ~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 69 KLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred hcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 3344444433333222 3677777777888888999999999999888752 345667778888888888999999988
Q ss_pred HHHhCC-CCC---ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 518 FVQSMP-IKS---DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 518 ~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.+++.. .+| ++.....+...+...|.+++|+..++.++...|+ +.....++..+.++|+.++|..-+..+.+.-.
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 888764 222 2334556778888899999999999999999888 77888888899999988888777666655433
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.13 E-value=1.8e-05 Score=67.45 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
..+..++..+...|++++|...|++.. ..|+ ...+..++..+...|++++|+..++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566666777777777777777664 2222 34667777888888888888888888888888888888888888
Q ss_pred HHccCC--------------hHHHHHHHHHHHhcCc
Q 036661 572 YALGGR--------------WDGVANLRTMMKRNQV 593 (615)
Q Consensus 572 ~~~~g~--------------~~~A~~~~~~~~~~~~ 593 (615)
|...|+ +++|.+.+++....++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 888776 5667777777665443
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.10 E-value=3.8e-05 Score=61.05 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=67.0
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHH
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLL 535 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~ 535 (615)
++..++..+.+.|++++|.+.|..+...+.-.+ ....+..++.++.+.|++++|.+.++++. ..|+ ...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566667777777777777764321111 12345556777777777777777777664 2233 34566677
Q ss_pred HHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661 536 CACKIHRNIEIGEYVAYRLFELEPHSAAPY 565 (615)
Q Consensus 536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 565 (615)
.++...|+.++|...++++++..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 777788888888888888888888765543
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=6.9e-06 Score=48.42 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=32.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNN 54 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 54 (615)
+||++|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999974
No 159
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.8e-06 Score=48.74 Aligned_cols=35 Identities=34% Similarity=0.567 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCCh
Q 036661 121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADF 155 (615)
Q Consensus 121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 155 (615)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988873
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=8.8e-06 Score=47.52 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcC
Q 036661 121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQA 153 (615)
Q Consensus 121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 153 (615)
.+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.04 E-value=1.3e-05 Score=57.00 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=54.2
Q ss_pred HHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 535 LCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 535 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
...+.+.+++++|.+.++++++++|+++..+..+|.+|...|++++|.+.+++..+..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356788999999999999999999999999999999999999999999999999877753
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.04 E-value=4e-06 Score=58.71 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=47.9
Q ss_pred HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
...|++++|++.++++++.+|+++.++..++.+|.+.|++++|.++++++......
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46788999999999999999999999999999999999999999999888776653
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.02 E-value=3e-05 Score=65.92 Aligned_cols=93 Identities=14% Similarity=-0.004 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHH
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMAN 570 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 570 (615)
...+..++..+...|++++|...+++.. ..|+ ..++..+...+...|++++|+..++++++++|..+..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4456667777778888888888888774 2222 2467888889999999999999999999999999888888888
Q ss_pred HHH-------ccCChHHHHHHHHHH
Q 036661 571 IYA-------LGGRWDGVANLRTMM 588 (615)
Q Consensus 571 ~~~-------~~g~~~~A~~~~~~~ 588 (615)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888887555555443
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=6e-05 Score=72.33 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=80.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhc
Q 036661 431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRK 509 (615)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 509 (615)
-...+...|++++|+..|+++++.+ +.+...+..+..+|...|++++|+..++++.. +.| +...|..++.+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 4556678899999999999999873 34556888888899999999999999999984 344 466788899999999
Q ss_pred CChHHHHHHHHhCC-CCCChhhHHHHH
Q 036661 510 GKLKEALDFVQSMP-IKSDAGIWGTLL 535 (615)
Q Consensus 510 g~~~~A~~~~~~~~-~~p~~~~~~~l~ 535 (615)
|++++|...|++.. ..|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999987 566554444343
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=97.99 E-value=6.1e-05 Score=60.84 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=77.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCCh
Q 036661 501 CMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRW 578 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 578 (615)
..+.-+...|++++|..+|+-+. ..-+...|..|+.++...+++++|+..|..+..++++||...+..+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 45555668899999999988765 3445667888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 036661 579 DGVANLRTMMKR 590 (615)
Q Consensus 579 ~~A~~~~~~~~~ 590 (615)
++|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988876
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.98 E-value=0.00022 Score=58.01 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=95.4
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661 483 FNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 559 (615)
+++..++....|+...-..|..++.+.|+..||...|++.. .--|...+..+.++....++...|...++++.+.+|
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 44555555678998888899999999999999999999986 445777888899999999999999999999999998
Q ss_pred C--CCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 560 H--SAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 560 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
. +|.....++.+|...|++.+|+..|+...+-
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5 6888999999999999999999999887764
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.95 E-value=1.3e-05 Score=55.45 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=49.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 562 (615)
++..+.+.|++++|.+.|+++. ..| +...+..++.++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677888899999999998886 445 456888888999999999999999999999999864
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.00024 Score=60.65 Aligned_cols=129 Identities=18% Similarity=0.281 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHH
Q 036661 425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN--RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSC 501 (615)
Q Consensus 425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 501 (615)
...+..+...+...|++++|...+++..+.+..+. ...+..+..++.+.|++++|...+++..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566677777777888888888887776432222 246666677777778888887777777742 23 3445555
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661 502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGR 577 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 577 (615)
++.++...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 123678889999999999986 5555555555544
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.95 E-value=0.00033 Score=70.30 Aligned_cols=139 Identities=14% Similarity=0.057 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHh--c---CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhcc--------CchHHHHHHHHHHHH
Q 036661 423 KTVVSWTTMIAGCAL--N---GEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHA--------GFLEKGWGYFNLMTK 488 (615)
Q Consensus 423 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 488 (615)
.+...|...+++... . ++...|..+|++.++. .|+. ..+..+..++... .++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 466677777666433 2 2366888888888886 6664 3444443333221 112333333333322
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 489 VYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
....+.+...+..++-.....|++++|...++++. ..|+...|..++..+...|+.++|...++++++++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 11123344566666666666788888888888776 5667667777777777888888888888888888887664
No 170
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.6e-05 Score=46.38 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=30.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEP 52 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 52 (615)
+|+.+|.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 79999999999999999999999999999887
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00011 Score=55.45 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=51.8
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhC
Q 036661 465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHR 542 (615)
Q Consensus 465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 542 (615)
.+...+...|++++|..+++.+.+. .+.+...+..++.++...|++++|.+.++... ..| +...+..++..+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444445555566666665555532 11222444555556666666666666665543 222 2345556666666677
Q ss_pred ChhHHHHHHHHHhccCC
Q 036661 543 NIEIGEYVAYRLFELEP 559 (615)
Q Consensus 543 ~~~~A~~~~~~~~~~~p 559 (615)
++++|...++++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777776665
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=3.9e-05 Score=56.22 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=37.1
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHH
Q 036661 438 NGEFVEALDLFHQMMELDLR-PNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEA 515 (615)
Q Consensus 438 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 515 (615)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...| +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555666666665554211 1223333455555566666666555555 2 1111 122233345555555555555
Q ss_pred HHHHHh
Q 036661 516 LDFVQS 521 (615)
Q Consensus 516 ~~~~~~ 521 (615)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555543
No 173
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.91 E-value=5.3e-06 Score=47.87 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=31.2
Q ss_pred HHHHhccCCCCCCChHhHHHHHHccCChHHHHH
Q 036661 551 AYRLFELEPHSAAPYVEMANIYALGGRWDGVAN 583 (615)
Q Consensus 551 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 583 (615)
++++++++|+++.+|..||.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999964
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.85 E-value=9.2e-05 Score=66.99 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=40.8
Q ss_pred hcCChHHHHHHHHhCC-CCCCh----hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC---CCChHhHHHHHHccCChH
Q 036661 508 RKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS---AAPYVEMANIYALGGRWD 579 (615)
Q Consensus 508 ~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~ 579 (615)
+.|++++|...|+.+. ..|+. ..+..++.++...|++++|...|+++++..|++ +.++..++.+|...|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 3444444444444443 22222 233444455555555555555555555554443 233344455555555555
Q ss_pred HHHHHHHHHHhcC
Q 036661 580 GVANLRTMMKRNQ 592 (615)
Q Consensus 580 ~A~~~~~~~~~~~ 592 (615)
+|.++|+++.+..
T Consensus 235 ~A~~~~~~vi~~y 247 (263)
T PRK10803 235 KAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHC
Confidence 5555555554433
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.032 Score=52.30 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchH
Q 036661 398 NALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLE 477 (615)
Q Consensus 398 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 477 (615)
+.-+.-+...|+...|.++-.+..-|+-.-|..-+.+++..++|++...+... +-++.-|...+.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33344455666667777776666666666777777777777777665554321 112355666666666667766
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 478 KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 478 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
+|..++.++. +..-+..|.+.|++.+|.+.-.+..
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 6666665521 1234566666777766666654433
No 176
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=5e-05 Score=53.26 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhC-ChhHHHHHHHHHhccCC
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHR-NIEIGEYVAYRLFELEP 559 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 559 (615)
+..|..++..+...|++++|+..|++.. ..| +...+..++.++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567778888888888888888888876 333 5567888888888888 79999999999998887
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.77 E-value=2e-05 Score=55.12 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=23.4
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
..|++++|+++|+++... .+-+...+..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555432 12233444445555555555555555555544
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.74 E-value=0.00079 Score=62.32 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA-CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD 504 (615)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 504 (615)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367778888888888999999999998543 3334455544444 33356777799999999875 4556677888889
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 505 LLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
.+.+.|+.+.|..+|++.. .-|. ...|...+..-.+.|+.+...++.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999887 2222 2478888888888999999999999998887773
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.0041 Score=56.00 Aligned_cols=173 Identities=10% Similarity=0.021 Sum_probs=99.9
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CCh-H---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-
Q 036661 400 LIDMYSKCGSIGDARELFYALPE--KTV-V---SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH- 472 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 472 (615)
....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...+++.++.........+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 44445567777777777777665 222 1 2234556677778888888888877775211111222222222211
Q ss_pred -c---------------Cc---hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH
Q 036661 473 -A---------------GF---LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT 533 (615)
Q Consensus 473 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 533 (615)
. .+ ...|+..|+.+++.+ |+.. -..+|...+..+...- ...-..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~-------------ya~~A~~rl~~l~~~l-a~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQ-------------YTTDATKRLVFLKDRL-AKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCCh-------------hHHHHHHHHHHHHHHH-HHHHHH
Confidence 1 11 233445555555432 3321 1223322222221000 001123
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
.+..|.+.|.+..|..-++.+++..|+.+ +++..++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 55668889999999999999999888754 567788899999999999999887664
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.71 E-value=0.047 Score=51.66 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=117.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHhhc-ccc---hhhHHHHHHHHHHhcCCCC
Q 036661 324 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSM-------ISGCG-QSG---ALELGKWFDNYACSGGLKD 392 (615)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~-~~~---~~~~a~~~~~~~~~~~~~~ 392 (615)
..++..++...++.++...|.+.+.-+.-. .|+...-..+ -+..+ ... +...-..+++.....++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 347888889999999999998888776553 3443322111 12222 111 2223344444444444322
Q ss_pred chHH--HHHHHHHHHhcCC-hHHHHHHHhcCCC---CChHHHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCC
Q 036661 393 NVMV--CNALIDMYSKCGS-IGDARELFYALPE---KTVVSWTTMI----AGCAL---NGEFVEALDLFHQMMELDLRPN 459 (615)
Q Consensus 393 ~~~~--~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~p~ 459 (615)
-.-+ ...-..-+.+.|. -++|.++++.+.. -|...-|.+. ..|.+ .....+-+.+-+-+.+.|++|-
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 2111 1112233445555 7888898887765 3444333322 22322 2334445555555566787764
Q ss_pred H----HHHHHHHH--HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 460 R----VTFLAVLQ--ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 460 ~----~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
. ..-+.|.. -+...|++.++.-+-..+. .+.|++.+|..++-++....++++|++++..++
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3 34444444 3456899999887777766 668999999999999999999999999999988
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.0003 Score=54.71 Aligned_cols=88 Identities=16% Similarity=-0.021 Sum_probs=54.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CC---CC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC---CCCChHhHHHHHH
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IK---SD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH---SAAPYVEMANIYA 573 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~---p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 573 (615)
+..++-..|+.++|+.+|++.. .. ++ ...+..+..++...|++++|+.++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4445555666666666666554 11 11 224455666677777777777777777776666 5555666667777
Q ss_pred ccCChHHHHHHHHHHH
Q 036661 574 LGGRWDGVANLRTMMK 589 (615)
Q Consensus 574 ~~g~~~~A~~~~~~~~ 589 (615)
..|++++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777665443
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.0012 Score=66.46 Aligned_cols=136 Identities=14% Similarity=0.080 Sum_probs=97.9
Q ss_pred CCCCCHHHHHHHHHHhhc--c---CchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhc--------CChHHHHHHHH
Q 036661 455 DLRPNRVTFLAVLQACTH--A---GFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRK--------GKLKEALDFVQ 520 (615)
Q Consensus 455 ~~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~ 520 (615)
+.+.|...|...+++... . +....|..+|+++.+ ..|+. ..+..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 346677888888876443 2 347789999999984 46764 3444444444322 12344555555
Q ss_pred hCC----CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 521 SMP----IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 521 ~~~----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
+.. ...++..+..+.......|++++|...++++++++|+ ...|..+|.+|...|+.++|.+.+++.....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 532 2334456766766667789999999999999999995 789999999999999999999999999876653
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.66 E-value=0.0093 Score=58.56 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
.+...+...+.+...+.-|-++|.++-. ...+++.....+++.+|+.+-++.+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 3444444444455556667777776652 1235666777777777777777766
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0022 Score=51.84 Aligned_cols=97 Identities=8% Similarity=0.019 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHH
Q 036661 423 KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSC 501 (615)
Q Consensus 423 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 501 (615)
.+....-.+..-+...|++++|..+|+-+... .|.. .-|..|..++-..|++++|+..|.....- . +-++..+-.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ 108 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHH
Confidence 33444444555556666667776666666654 3433 44555566666666677776666666521 1 223445555
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 036661 502 MADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
++.++...|+.+.|.+.|+...
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666666544
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.00054 Score=51.03 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=64.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHcCC-cCChhHHHHHHHHHHhcC--------ChhHHHHHHHHHHHhcCCCccchHHH
Q 036661 125 AMIVGFAQMGFLEKVLCLFYNMRLVGI-QADFVTVMGLTQAAIHAK--------HLSLLKSVHSFGIHIGVDADVSVCNT 195 (615)
Q Consensus 125 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (615)
.-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .....+.+++.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345566667999999999999999999 999999999999987653 23456678888999999999999999
Q ss_pred HHHHHHc
Q 036661 196 WISAYAK 202 (615)
Q Consensus 196 l~~~~~~ 202 (615)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887764
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.65 E-value=0.00082 Score=57.09 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPN--RVTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
.|..++..+...|++++|+..+++.......|. ..++..+...+...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555555554321111 1244455555555555555555555554
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=6.9e-05 Score=42.52 Aligned_cols=31 Identities=39% Similarity=0.731 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHHcCC
Q 036661 121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGI 151 (615)
Q Consensus 121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 151 (615)
.+||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887763
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.049 Score=54.27 Aligned_cols=174 Identities=14% Similarity=0.034 Sum_probs=91.9
Q ss_pred CCCcccHHHHHHHHHhcCCchhHhHHHHHHhhc-CC--------CCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCch
Q 036661 51 EPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKS-PF--------WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVA 121 (615)
Q Consensus 51 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 121 (615)
.|.+..|..+.......-.++.|...|-+.... |+ -.+.....+=+. +-.|.+++|++++-.+.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 467777777776655544555555544433211 11 001111111122 223778888888877776653
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHH
Q 036661 122 SWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQAD----FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 197 (615)
Q Consensus 122 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 197 (615)
.|..+.+.|++-.+.++++.= |-..| ...++.+-..++....|+.|.+.+..... ....+
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 355666777777666655431 11111 22466666666666667776666654322 12345
Q ss_pred HHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHH
Q 036661 198 SAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFY 246 (615)
Q Consensus 198 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 246 (615)
+++.+..++++-+.+-+.+++ +....-.+...+.+.|.-++|.+.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe---~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE---DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc---ccchHHHHHHHHHhhchHHHHHHHH
Confidence 666666666666655555552 3334445555555566555555544
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.61 E-value=0.003 Score=58.80 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC----CCh-hH
Q 036661 431 MIAGCALN-GEFVEALDLFHQMMEL----DLRPN--RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN----PEL-NH 498 (615)
Q Consensus 431 l~~~~~~~-~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~-~~ 498 (615)
+...|... |+++.|++.|++..+. | .+. ..++..+...+.+.|++++|.++|+++....--. .+. ..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 44444444 5666666666555441 1 111 1234445555566666666666666554321100 111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSM 522 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~ 522 (615)
+...+-++...|++..|.+.+++.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222333444555655555555554
No 190
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=9.6e-05 Score=41.90 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=27.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDI 50 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 50 (615)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 799999999999999999999999988764
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.56 E-value=0.00027 Score=67.14 Aligned_cols=65 Identities=15% Similarity=-0.018 Sum_probs=45.6
Q ss_pred ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC---hHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP---YVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
+...+..+..++...|++++|+..++++++++|+++.. |++++.+|..+|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566667777777777777777777777777776643 777777777777777777777777664
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.0037 Score=58.20 Aligned_cols=160 Identities=13% Similarity=0.179 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHhhcc-CchHHHHHHHHHHHHhhCCCCC----
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMME----LDLRPNR--VTFLAVLQACTHA-GFLEKGWGYFNLMTKVYQVNPE---- 495 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~---- 495 (615)
.|.....+|.+. ++++|+..+++..+ .| .|+. ..+..+...|... |++++|++.|++...-+.....
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a 154 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA 154 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence 344444555444 88888887777654 34 4443 3677778889888 9999999999998764433332
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--Chh---hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC---
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP----IKS--DAG---IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA--- 563 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--- 563 (615)
..++..++..+.+.|++++|.++|+++. ..+ ... .+...+-++...||...|.+.+++..+.+|.-..
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3467788899999999999999998864 111 111 2233344566789999999999999999986443
Q ss_pred --ChHhHHHHHHcc--CChHHHHHHHHHH
Q 036661 564 --PYVEMANIYALG--GRWDGVANLRTMM 588 (615)
Q Consensus 564 --~~~~l~~~~~~~--g~~~~A~~~~~~~ 588 (615)
....|..++-.. ..+++|+.-|+.+
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 344455555432 3466666666544
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.52 E-value=0.0001 Score=45.87 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHH
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMAN 570 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 570 (615)
.++..+..++...|++++|++.++++++.+|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999998888875
No 194
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.00081 Score=62.22 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=102.6
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhCC--CCCChhhHHHHHHH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR-KGKLKEALDFVQSMP--IKSDAGIWGTLLCA 537 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 537 (615)
.+|..+++...+.+..+.|..+|.++.+. -..+..+|...+..-.+ .++.+.|.++|+... ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 36778888888888899999999999843 23345667777666444 566666999999986 66677889999999
Q ss_pred HHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 538 CKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 538 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
+...++.+.|+.+|++++..-|... ..|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998776543 588889999999999999999999998754
No 195
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0011 Score=61.56 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL 574 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 574 (615)
.++..++-+|.+.+++.+|+...++.+ .+++...+..-+.++...|+++.|+..|+++++++|+|..+-..+..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 456778999999999999999999987 566777888899999999999999999999999999999999889888887
Q ss_pred cCChHHH-HHHHHHHHhcCc
Q 036661 575 GGRWDGV-ANLRTMMKRNQV 593 (615)
Q Consensus 575 ~g~~~~A-~~~~~~~~~~~~ 593 (615)
..++.+. .++|.+|-....
T Consensus 338 ~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 7776555 888999876443
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.49 E-value=0.098 Score=49.53 Aligned_cols=128 Identities=15% Similarity=0.094 Sum_probs=78.5
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhH-HHHHHHHH
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIW-GTLLCACK 539 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~ 539 (615)
.|..++.+-.+..-++.|..+|-+..+..-+.+++.++++++..++ .|+...|..+|+--. .-||...+ ...+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4555555555556677777777777755225566667777666554 567777777776644 34444433 45555666
Q ss_pred HhCChhHHHHHHHHHhccCCCC--CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 540 IHRNIEIGEYVAYRLFELEPHS--AAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
..++-+.|..+|++.++.-.+. ..+|..++.--..-|+...+..+=+++.+
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6777777777777665432222 45666666666666777666665555543
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.46 E-value=0.00028 Score=50.09 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh
Q 036661 503 ADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE 567 (615)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 567 (615)
...|.+.+++++|.++++.+. ..| +...+...+.++...|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356778888888888888876 334 55577778888888999999999999999999986654443
No 198
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.45 E-value=0.0013 Score=63.38 Aligned_cols=118 Identities=14% Similarity=0.026 Sum_probs=92.1
Q ss_pred CCChHHHHHHHHHhhcCCChhHHHHhhccCCC-C-----CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHH
Q 036661 86 WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPD-R-----DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVM 159 (615)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 159 (615)
+.+......+++.+....+++.+..++-.... | -..+.+++++.|.+.|..+.+++++..=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555566667777777778888877777653 2 23456789999999999999999999988999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHcc
Q 036661 160 GLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKC 203 (615)
Q Consensus 160 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (615)
.++..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999988888777666777776666666554
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.45 E-value=0.097 Score=48.62 Aligned_cols=257 Identities=14% Similarity=0.091 Sum_probs=168.7
Q ss_pred cHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh--cccchhhHHHHHHHHHHhcCCCCchHH--HHH
Q 036661 326 SWTAMISGYAQ--KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGC--GQSGALELGKWFDNYACSGGLKDNVMV--CNA 399 (615)
Q Consensus 326 ~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 399 (615)
.|..|-.++.. .|+-..|.++-.+.... +..|......++.+- .-.|+.+.|.+-|+.|... |.... +..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 45556555554 56666776665554322 345555566666553 4568999999999999763 22222 233
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHh--h
Q 036661 400 LIDMYSKCGSIGDARELFYALPE--KT-VVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNRV--TFLAVLQAC--T 471 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~l~~~~--~ 471 (615)
|.-.-.+.|+.+.|...-+.... |. .-.+...+...+..|+++.|+++++.-.+.. +.++.. .-..|+.+- .
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33344577888888887776554 22 3477889999999999999999999877643 455542 222233221 1
Q ss_pred c-cCchHHHHHHHHHHHHhhCCCCChhH-HHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHH-
Q 036661 472 H-AGFLEKGWGYFNLMTKVYQVNPELNH-YSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIG- 547 (615)
Q Consensus 472 ~-~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A- 547 (615)
. ..+...|...-.+.. .+.|+..- -..-..+|.+.|+..++-.+++.+= ..|.+.++..+..+ +.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHH
Confidence 1 234556665555544 56677532 2334588999999999999999874 66777666544433 45554322
Q ss_pred HHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 548 EYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 548 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
.+-.+++.++.|++.+....++..-...|++..|+.--+.....
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 34456667889999999999999999999999888777665443
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0069 Score=56.27 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=88.2
Q ss_pred HHHhcCChHHHHHHHhcCCCCCh-HHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHH---HH----------
Q 036661 403 MYSKCGSIGDARELFYALPEKTV-VSWTTMIA--GCALNGEFVEALDLFHQMMELDLRPNRVTFL---AV---------- 466 (615)
Q Consensus 403 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~---~l---------- 466 (615)
++.-.|+.++|.+.--.+.+-+. ..+...++ ++.-..+.+.+...|++.+.. .|+...-. ..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhh
Confidence 34445555555544433333211 12222222 223345566666666666554 34332111 11
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHH
Q 036661 467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACK 539 (615)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~ 539 (615)
..-..+.|.+..|.+.|.+.+ ++.|+ ...|...+....+.|+.++|+.-.+... ..|. ...+.....++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 223456788888888888777 44444 4456666667778888888888887776 3322 123333445566
Q ss_pred HhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661 540 IHRNIEIGEYVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 568 (615)
..+++++|++.++++.+...+ +.....+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s-~e~r~~l 360 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD-CEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc-cchHHHH
Confidence 678888888888888776655 3333333
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0018 Score=58.80 Aligned_cols=101 Identities=14% Similarity=0.074 Sum_probs=68.8
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHH
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLL 535 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~ 535 (615)
.|........+.|++++|...|+.+.+.+.-.+ ....+..++.+|...|++++|...|+++. ..|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556778888888888775431111 02456667788888888888888887775 2232 44556667
Q ss_pred HHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661 536 CACKIHRNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 562 (615)
.++...|+.++|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777788999999999999999988854
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.18 Score=51.10 Aligned_cols=155 Identities=11% Similarity=0.001 Sum_probs=85.2
Q ss_pred HHHhcCChhHHHHHHHHHH--------hCCCCCCcccHHHH-----HHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHH
Q 036661 28 EAVDKNEAHKALLLFRRMK--------KNDIEPNNLTFPFI-----AKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTT 94 (615)
Q Consensus 28 ~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 94 (615)
++.+..++++-..+.+.++ +.|++....-|..+ +.-+...+.+..|.++...+-..-.+- ..++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 3444455555444443332 34565555444443 455566677888888777664322122 556666
Q ss_pred HHHHhhcCCC---hhHHHHhhccCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcC----CcCChhHHHHHHHHH
Q 036661 95 MVDMYAKCDR---LDCAYKLFDKMPD--RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVG----IQADFVTVMGLTQAA 165 (615)
Q Consensus 95 l~~~~~~~g~---~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~ 165 (615)
....+.+..+ -+-+..+-+++.. ....+|..+.+.-...|+++-|..+++.=...+ +-.+..-+...+.-+
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 6666665532 2233333344444 345677777877778888888888776432222 111222355556666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 036661 166 IHAKHLSLLKSVHSFGIH 183 (615)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~ 183 (615)
...|+.+....++-.+.+
T Consensus 557 ies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HhcCCchhHHHHHHHHHH
Confidence 667777766666655554
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.42 E-value=0.0015 Score=62.82 Aligned_cols=119 Identities=12% Similarity=0.047 Sum_probs=89.3
Q ss_pred CccchHHHHHHHHHccCCHHHHHHHHHhcccCC----CCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHH
Q 036661 188 ADVSVCNTWISAYAKCNDLKMAELVFRGIEEGL----RTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVS 263 (615)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 263 (615)
.+......+++.+....+++.+..++.+....+ --..+..++++.|...|..++++.+++.=...|+-||..|++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 344455556666666667777777776665531 1234456888999999999999999998888999999999999
Q ss_pred HHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 036661 264 LLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKC 306 (615)
Q Consensus 264 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (615)
++..+.+.|++..|.++...|...+.-.++.++..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999998888887666666666555555554
No 204
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.40 E-value=0.0029 Score=47.24 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHhhcccc--------hhhHHHHHHHHHHhcCCCCchHHH
Q 036661 327 WTAMISGYAQKGDLDEALRLFFAMEAAGE-VPDLVTVLSMISGCGQSG--------ALELGKWFDNYACSGGLKDNVMVC 397 (615)
Q Consensus 327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 397 (615)
....|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+..+.. .+-....+++.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999998876543 345667888899999999999999
Q ss_pred HHHHHHHHh
Q 036661 398 NALIDMYSK 406 (615)
Q Consensus 398 ~~l~~~~~~ 406 (615)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.0058 Score=47.61 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=68.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHH
Q 036661 430 TMIAGCALNGEFVEALDLFHQMMELDLRPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLL 506 (615)
Q Consensus 430 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 506 (615)
.+..++-..|+.++|+.+|++....|..... ..+..+.+.+...|++++|..+++.....+.-.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556677889999999999999998866553 4677778888999999999999998886532111 122233345677
Q ss_pred HhcCChHHHHHHHHhCC
Q 036661 507 GRKGKLKEALDFVQSMP 523 (615)
Q Consensus 507 ~~~g~~~~A~~~~~~~~ 523 (615)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 88899999988876544
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.14 Score=48.17 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=83.3
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHh
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIH 541 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (615)
+.+..+.-+...|....|.++-. ++.+ |+..-|...+.+|+..|+|++-.++... +-++..|...+.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 44445566667787777666544 4444 8888899999999999999988887654 23457888899999999
Q ss_pred CChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 542 RNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
|+..+|..+..++ .+...+..|.+.|+|.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999998881 1256788899999999998774433
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0072 Score=54.17 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHH
Q 036661 443 EALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG---KLKEALDFV 519 (615)
Q Consensus 443 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 519 (615)
....-++.-...+ +-|...|..|..+|...|+.+.|..-|....+- .+++...+..+++++..+. ...++..+|
T Consensus 140 ~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 140 ALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3333344444442 445678999999999999999999999988853 3344566777777765443 456788899
Q ss_pred HhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661 520 QSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 520 ~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 562 (615)
+++. .+.+......|...+...|++.+|...++.+++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 8887 344556677777888899999999999999999887643
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.33 E-value=0.0011 Score=61.11 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=87.1
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHH---HHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCChh
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLM---TKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--------IKSDAG 529 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~ 529 (615)
.|..|...|.-.|+++.|+...+.= .+.+|-... ...+..+..++.-.|+++.|.+.++... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678888887765532 233343322 3466778888888899999988887653 112233
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccC------CCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELE------PHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.-..|...|.-..++++|+.+.++=+.+. -....++.+|+++|...|..++|..+.++-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44567777777778888888877655432 22356788899999999999999888776654
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.30 E-value=0.04 Score=52.10 Aligned_cols=158 Identities=19% Similarity=0.116 Sum_probs=87.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-------ChHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036661 400 LIDMYSKCGSIGDARELFYALPEK-------TVVSWTTMIAGCAL---NGEFVEALDLFHQMMELDLRPNRVTFLAVLQA 469 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 469 (615)
++-.|....+++...++++.+... .+..-...+-++.+ .|+.++|+.++..+....-.+++.++..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333455555555555555555441 11122233344445 67777777777775554446666677666655
Q ss_pred hhc---------cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH----HHHHH---HhC-----C--CCC
Q 036661 470 CTH---------AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE----ALDFV---QSM-----P--IKS 526 (615)
Q Consensus 470 ~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-----~--~~p 526 (615)
|-. ....++|...|.+.- .+.|+...--.++.++.-.|...+ ..++- ... . ...
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 421 123566666666544 445654433334444444443222 22222 110 1 223
Q ss_pred ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
+...+.+++.++.-.|++++|.+.+++++++.|.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 4445577888889999999999999999999765
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.011 Score=51.90 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=38.5
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHH
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVAN 583 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 583 (615)
++..|.+.|.+..|..-++.+++..|+.+ .++..++.+|.+.|..+.|.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 45567789999999999999999999864 466778889999999885543
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.22 E-value=0.00027 Score=50.90 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccC----CC---CCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELE----PH---SAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
++..+...+...|++++|+..+++++++. ++ -..++..+|.+|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55667777777788888888877777531 22 245777888999999999999999888754
No 212
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.20 E-value=0.043 Score=49.49 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC--Cc-c---cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036661 300 ISMYSKCGDIDSARFLFDGMCDR--TR-V---SWTAMISGYAQKGDLDEALRLFFAMEAA 353 (615)
Q Consensus 300 ~~~~~~~~~~~~a~~~~~~~~~~--~~-~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 353 (615)
...+...|++++|.+.|+.+... +. . ..-.+..++.+.+++++|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33344556666666666655221 11 1 1123445555666666666666665554
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.18 E-value=0.0068 Score=48.11 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=56.9
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC---ChHhHHHHHH
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA---PYVEMANIYA 573 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~ 573 (615)
-+....+.|++++|.+.|+.+. .-| ....-..++.++.+.+++++|...+++.++++|.++. ++...|-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444456677777777776664 111 2334556777777788888888888888888877654 3444455555
Q ss_pred ccCC---------------hHHHHHHHHHHHhcC
Q 036661 574 LGGR---------------WDGVANLRTMMKRNQ 592 (615)
Q Consensus 574 ~~g~---------------~~~A~~~~~~~~~~~ 592 (615)
.... ..+|...|+++.+.-
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 5544 566667776666544
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.044 Score=47.83 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC----CCCChhHHHHHH
Q 036661 428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ----VNPELNHYSCMA 503 (615)
Q Consensus 428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~ 503 (615)
-+.++..+.-.|.+.-....++++++...+-++.....|++.-.+.||.+.|..+|++..+..+ ..-...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455666666788888888999999876555677888888899999999999999997765433 222333444455
Q ss_pred HHHHhcCChHHHHHHHHhCC-C-CCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 504 DLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
..|.-++++.+|...+.+++ . +.++...+.-+-+..-.|+..+|++.++.+.+..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 66777889999999999987 2 3334445555555566789999999999999999974
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.17 E-value=0.24 Score=47.23 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=49.8
Q ss_pred hHHHHHHH--HHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 530 IWGTLLCA--CKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 530 ~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
.-+.+..+ ...+|++.++.-.-.-+.++.| ++.+|..+|-++....+|++|.++++.+.
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 44555544 4568999999999999999999 69999999999999999999999998764
No 216
>PRK11906 transcriptional regulator; Provisional
Probab=97.08 E-value=0.0064 Score=58.19 Aligned_cols=145 Identities=12% Similarity=0.144 Sum_probs=96.2
Q ss_pred ChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHhhcc---------CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661 440 EFVEALDLFHQMME-LDLRPNR-VTFLAVLQACTHA---------GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR 508 (615)
Q Consensus 440 ~~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 508 (615)
..+.|+.+|.+... ..+.|+. ..|..+..++... .+..+|.+..++..+ --+-|......++.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 45678888888882 2246665 4666666655432 234456666666663 223455666677777788
Q ss_pred cCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh--HHHHHHccCChHHHHHH
Q 036661 509 KGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE--MANIYALGGRWDGVANL 584 (615)
Q Consensus 509 ~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~ 584 (615)
.|+++.|..+|++.. ..|+ ..+|......+...|+.++|.+.++++++++|....+-.. .++.|+.. ..++|+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 888999999998887 5555 4567777777778899999999999999999975444333 33345544 45667766
Q ss_pred HHH
Q 036661 585 RTM 587 (615)
Q Consensus 585 ~~~ 587 (615)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 643
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0018 Score=60.17 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
..++..+..++.+.+++..|++...++++++|+|..+++.-|.+|...|+++.|+..|+++++..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 346677888999999999999999999999999999999999999999999999999999987654
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.98 E-value=0.0062 Score=56.42 Aligned_cols=130 Identities=13% Similarity=0.085 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHh---h-CCCCChh
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQM----MELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKV---Y-QVNPELN 497 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~ 497 (615)
.|..|...|.-.|+++.|+..-+.= .+-|-+.. ...+..+..++.-.|+++.|.+.|+....- . .-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666677788777654332 22232222 245667777778888888888877765421 0 1112234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--------CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP--------IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
+...|...|.-..++++|++++.+-. ..-....+..|..++...|..++|..+.++.++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567777777778888888876643 111233556677777778888888877776655
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.53 Score=47.88 Aligned_cols=328 Identities=11% Similarity=0.027 Sum_probs=174.4
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhh--hhhhHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 036661 228 SIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL--VQGRLVHSHGIHYGFDLDVSVINTLISMYSK 305 (615)
Q Consensus 228 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (615)
.+|.-+...+.+..|+++-..+...-... ...|.....-..+..+. +.+.+.+.+-.+... .+...|..+..-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 45566666777777777766663321111 34444444444333211 112222222222212 333456667777777
Q ss_pred cCCHHHHHHHHhccCCC--------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhH
Q 036661 306 CGDIDSARFLFDGMCDR--------TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALEL 377 (615)
Q Consensus 306 ~~~~~~a~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 377 (615)
.|+.+-|..+++.-+.. +..-+..-+.-....|+.+....++-.+... .+...|...+ .+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchh
Confidence 88888888887664332 1223444455556666666666655555432 1111221111 13344
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH-HhcC-----CCCChHHHHHHHHHHHhcCC----------h
Q 036661 378 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL-FYAL-----PEKTVVSWTTMIAGCALNGE----------F 441 (615)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~-----~~~~~~~~~~l~~~~~~~~~----------~ 441 (615)
|..+|..+.+..-. ..+-+.|-...+...+-.+ ++.. .++-..........+.+... .
T Consensus 591 a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 44555544432101 1111222222222221111 1110 01111122233333433332 1
Q ss_pred HHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036661 442 VEALDLFHQMME-LDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQ 520 (615)
Q Consensus 442 ~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 520 (615)
.+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 112222222322 2323333455555666777888888888776655 4888888888999999999998888877
Q ss_pred hCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 521 SMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 521 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
... .+..|.-...+|.+.|+.++|.+++-+.-. +...+.+|.+.|++.+|.+.--+-
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 765 355677788999999999999988765432 226788999999999998875443
No 220
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.97 E-value=0.47 Score=47.11 Aligned_cols=181 Identities=15% Similarity=0.182 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA 469 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 469 (615)
....|...+..-...|+.+.+.-+|+...-| -...|-..+.-....|+.+-|..++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4456677777777888888888888877654 2234544444444558888887777776665333333333222333
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCChhhHHHHH----H-HHH
Q 036661 470 CTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEAL---DFVQSMP-IKSDAGIWGTLL----C-ACK 539 (615)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~l~----~-~~~ 539 (615)
+...|+++.|..+++.+..+. |+. ..-..-+....+.|+.+.+. +++.... ..-+......+. . .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 455678999999999998652 543 23333445566788888887 5555443 222222222222 1 123
Q ss_pred HhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661 540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG 576 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 576 (615)
-.++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3678899999999999999998888888888777665
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.96 E-value=0.016 Score=50.79 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh-HHHHHHHH
Q 036661 429 TTMIAGCALNGEFVEALDLFHQMMELDLR-PN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN-HYSCMADL 505 (615)
Q Consensus 429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~ 505 (615)
-.....+...|++.+|...|+.+...... |- ......++.++.+.|+++.|...+++..+.+.-.|... .+-.++.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 33445556667777777777777664211 11 23445556666777777777777777665543333221 11111111
Q ss_pred HHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC-----------------hHhH
Q 036661 506 LGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP-----------------YVEM 568 (615)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l 568 (615)
+... ..... ......+...+|...++.+++..|+++.+ -..+
T Consensus 89 ~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 89 YYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 00000 00122334556667777777777765432 2346
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCc
Q 036661 569 ANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+..|.+.|+|..|..-++.+.+.-+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8899999999999999999987643
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.054 Score=47.33 Aligned_cols=135 Identities=10% Similarity=0.063 Sum_probs=105.5
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCChhhHHH
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--------IKSDAGIWGT 533 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~ 533 (615)
..+.++..+.-.+.+.-....+.+.++. .-+.++.....|++.-...|+.+.|...|++.. .+-.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455667777778888889999999864 444566777889999999999999999998553 1122223333
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccCC
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFP 597 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 597 (615)
....+.-++|+..|...+.+.++.+|.++.+.+.-+-++.-.|+..+|++.++.|.+..+....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 4445566789999999999999999999999999999999999999999999999887765443
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.54 Score=47.36 Aligned_cols=203 Identities=11% Similarity=0.079 Sum_probs=133.6
Q ss_pred CCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHH-------HHHHHhcCCchhHhHHHHHHhhcCCC
Q 036661 15 RSSTINQWNSQIREAVDKNEAHKALLLFRRMKKN-DIEPNNLTFPFI-------AKACAKLSDFLYSQMIHGHIVKSPFW 86 (615)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~ 86 (615)
.|.+. .|..+...-...-.++.|...|-+.... |++.-.. +..+ ....+--|++++|.+++-++-+.+
T Consensus 689 nPHpr-LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPR-LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchH-HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 34445 7888877777777777777777766542 3321111 1111 112234588999999988876654
Q ss_pred CChHHHHHHHHHhhcCCChhHHHHhhccCCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH
Q 036661 87 SDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDR-----DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL 161 (615)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 161 (615)
..+..+.+.|||-.+.++++.-... -..+|+.+...+.....|++|.+.+..-... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 3466778889999999988774432 2357899999999999999999988764321 234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhh
Q 036661 162 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDD 241 (615)
Q Consensus 162 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 241 (615)
+.++.+...++..+.+... ++.+....-.+..++.+.|.-++|.+.|-+.. .|. .-+..|...++|.+
T Consensus 829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk-----aAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK-----AAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH-----HHHHHHHHHHHHHH
Confidence 5566666666555544443 34466777788889999999999888876554 332 23455666677777
Q ss_pred HHHHHHHH
Q 036661 242 SLNFYRHM 249 (615)
Q Consensus 242 a~~~~~~m 249 (615)
|.++-+..
T Consensus 897 avelaq~~ 904 (1189)
T KOG2041|consen 897 AVELAQRF 904 (1189)
T ss_pred HHHHHHhc
Confidence 87776654
No 224
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.87 E-value=0.015 Score=49.54 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=71.0
Q ss_pred HHHhcc--CCCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccc-------------
Q 036661 314 FLFDGM--CDRTRVSWTAMISGYAQ-----KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG------------- 373 (615)
Q Consensus 314 ~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------- 373 (615)
..|+.. ..++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 44566677777777664 4667777778888888899999999999998876532
Q ss_pred ---hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 036661 374 ---ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS 409 (615)
Q Consensus 374 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (615)
+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 346778888888888888888888888888876654
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.83 E-value=0.0012 Score=47.52 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-----CC---CC-hhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSMP-----IK---SD-AGIWGTLLCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
++.++.+|.+.|++++|++.+++.. .. |+ ..++..++.++...|++++|++++++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4444444444444444444444432 11 11 234555666666667777777777666543
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.0067 Score=53.66 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=59.1
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-ChhhHHHHH
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN-PELNHYSCMADLLGRKGKLKEALDFVQSMP----IKS-DAGIWGTLL 535 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~ 535 (615)
.|+.-+. +.+.|++..|...|....+.+.-. -....+-.|+.++...|++++|..+|..+. ..| -+..+..++
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 445566777777777777532111 012334457777777777777766665553 112 234555566
Q ss_pred HHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 536 CACKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
.+..+.|+.++|...++++++..|+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6666667777777777777776666443
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.82 E-value=0.0048 Score=47.19 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=40.6
Q ss_pred HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC----CCChHhHHHHHHccCChH
Q 036661 506 LGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS----AAPYVEMANIYALGGRWD 579 (615)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~ 579 (615)
+...|+.+.|++.|.+.. .+.....|+.-..++.-+|+.++|+.-+++++++.-+. ...|+..+.+|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 344455555555554443 22234445555555555555555555555555543221 123444445555555555
Q ss_pred HHHHHHHHHHhcC
Q 036661 580 GVANLRTMMKRNQ 592 (615)
Q Consensus 580 ~A~~~~~~~~~~~ 592 (615)
.|+.-|+...+-|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555444433
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.81 E-value=0.015 Score=48.00 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh-----cCcccCC
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR-----NQVKKFP 597 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 597 (615)
....++..+...|++++|...+++++..+|-+...|..+..+|...|+..+|.++|+++.+ -|+.|+|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4556777788899999999999999999999999999999999999999999999998854 4555443
No 229
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.79 E-value=0.015 Score=49.56 Aligned_cols=98 Identities=9% Similarity=0.015 Sum_probs=68.6
Q ss_pred HHHHhcccCCCCcchHHHHHHHHhc-----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCc--------------
Q 036661 211 LVFRGIEEGLRTVVSWNSIIGGCTY-----GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCP-------------- 271 (615)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-------------- 271 (615)
..|+.......+..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 3444443335566666666666543 455666777777888888888888888888776432
Q ss_pred --hhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 036661 272 --EALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD 308 (615)
Q Consensus 272 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (615)
.+-+-+..++++|...|+-||..++..+++.+.+.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2446678888888888888888888888888876554
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.78 E-value=0.066 Score=41.36 Aligned_cols=141 Identities=12% Similarity=0.088 Sum_probs=87.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661 435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE 514 (615)
Q Consensus 435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 514 (615)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-|.+.|- .....++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence 34568888888888888763 23344444444444445556667777776654333221 123345555555543
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 515 ALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 515 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
........+.....+|.-++-.+++..+.+.+..+|..+..++.+|.+.|+..+|.++++++-++|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33455556677788899999999999998766566899999999999999999999999999999874
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.71 E-value=0.43 Score=43.06 Aligned_cols=194 Identities=18% Similarity=0.163 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 036661 395 MVCNALIDMYSKCGSIGDARELFYALP-----EKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ- 468 (615)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~- 468 (615)
..+......+...+++..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344444555555555555555554432 12333444455555555566666666666665422221 11112222
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC--hhhHHHHHHHHHHh
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQVNP----ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD--AGIWGTLLCACKIH 541 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~ 541 (615)
.+...|+++.+...+.+... ..| ....+......+...++.++|...+.+.. ..+. ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 45566666666666666642 122 12223333333455666666666666654 2222 34555555566666
Q ss_pred CChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 542 RNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
++++.|...+.++....|.....+..++..+...|.++++...+.+.....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666666666644555555555555555666666666555433
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.079 Score=47.53 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=69.7
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH---HHHHHHHhCChh
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT---LLCACKIHRNIE 545 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 545 (615)
.....|++.+|...|+..... .+-+......++++|...|+.+.|..++..++.......+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345567777777777776642 122234555677777777777777777777763322222222 223333333333
Q ss_pred HHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 546 IGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 546 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
+.. .++..+..+|+|...-..++..|...|+.++|.+.+=.+..+
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 234445567777777777777777777777777776655544
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=96.68 E-value=0.045 Score=44.68 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=61.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 036661 431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG 510 (615)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 510 (615)
...-+...|++++|..+|+-+.-.+ .-|..-+..|..++-..+++++|+..|.....- . .-|+..+-..+.+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhC
Confidence 3344556778888888877777653 233444556666666777788888777766532 1 122333444677777778
Q ss_pred ChHHHHHHHHhCCCCCChhhH
Q 036661 511 KLKEALDFVQSMPIKSDAGIW 531 (615)
Q Consensus 511 ~~~~A~~~~~~~~~~p~~~~~ 531 (615)
+.+.|...|......|....+
T Consensus 120 ~~~~A~~~f~~a~~~~~~~~l 140 (165)
T PRK15331 120 KAAKARQCFELVNERTEDESL 140 (165)
T ss_pred CHHHHHHHHHHHHhCcchHHH
Confidence 888888877777655544333
No 234
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.55 E-value=0.0055 Score=50.85 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=64.1
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHh
Q 036661 467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIH 541 (615)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~ 541 (615)
..-+...|++++|..-|..+.....-.++ ...|..-+.++.+.+.++.|++-..+.. ..|. ...+.....+|-+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 44566778888888888877743211111 1245555566777777777777776665 4443 23444445566666
Q ss_pred CChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 542 RNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
..+++|+.-|+++++.+|....+-...+.+
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 777777777777777777755444444333
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.51 E-value=0.12 Score=51.76 Aligned_cols=160 Identities=17% Similarity=0.118 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH-----HHHHHHHHhh----ccCchHHHHHHHHHHHHhhCCCCChhH
Q 036661 429 TTMIAGCALNGEFVEALDLFHQMMELD-LRPNRV-----TFLAVLQACT----HAGFLEKGWGYFNLMTKVYQVNPELNH 498 (615)
Q Consensus 429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~-----~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~ 498 (615)
..++....-.||-+.+++.+.+..+.+ +.-... .|...+..+. .....+.|.++++.+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 344444445566666666666655422 111111 1222222222 244677888888888854 366555
Q ss_pred HHH-HHHHHHhcCChHHHHHHHHhCC------CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh-HHH
Q 036661 499 YSC-MADLLGRKGKLKEALDFVQSMP------IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE-MAN 570 (615)
Q Consensus 499 ~~~-l~~~~~~~g~~~~A~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~ 570 (615)
|.. -++.+...|+.++|++.|++.. .+-....+-.++..+....++++|...+.++.+.+.-+...|.. .|-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 543 3466777888888888888754 11123455667777888889999999999999877765555554 456
Q ss_pred HHHccCCh-------HHHHHHHHHHHhc
Q 036661 571 IYALGGRW-------DGVANLRTMMKRN 591 (615)
Q Consensus 571 ~~~~~g~~-------~~A~~~~~~~~~~ 591 (615)
+|...|+. ++|.+++++..+-
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 67788888 8888888887653
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.46 E-value=0.039 Score=45.49 Aligned_cols=72 Identities=14% Similarity=0.253 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH----HhhCCCCChhHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMT----KVYQVNPELNHY 499 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~ 499 (615)
+...++..+...|++++|..+++.+.... +-|...+..++.+|...|+...|.++|+++. +..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45566777788999999999999999874 4566789999999999999999999888775 356888887654
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=96.44 E-value=0.14 Score=49.42 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=101.4
Q ss_pred ChHHHHHHHhcCC---CCC---hHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661 409 SIGDARELFYALP---EKT---VVSWTTMIAGCALN---------GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA 473 (615)
Q Consensus 409 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 473 (615)
..+.|..+|.+.. +-+ ...|..+..++... .+..+|.+..++..+.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898877 433 45666666665432 23456777888888875 66778888888888888
Q ss_pred CchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh---hHHHHHHHHHHhCChhHHH
Q 036661 474 GFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG---IWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 474 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~---~~~~l~~~~~~~~~~~~A~ 548 (615)
++++.|...|++.. .+.|+. ..|...+..+.-.|+.++|.+.+++.. ..|... .....+..|.. .-.++|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 88999999999998 567774 566667777778899999999999954 666433 22333334443 4567777
Q ss_pred HHHHHHhccC
Q 036661 549 YVAYRLFELE 558 (615)
Q Consensus 549 ~~~~~~~~~~ 558 (615)
.+|-+-.+-+
T Consensus 428 ~~~~~~~~~~ 437 (458)
T PRK11906 428 KLYYKETESE 437 (458)
T ss_pred HHHhhccccc
Confidence 7776655433
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.43 E-value=0.024 Score=51.78 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=62.5
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCC-C------h
Q 036661 465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-----IKS-D------A 528 (615)
Q Consensus 465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p-~------~ 528 (615)
++..++...+.++++++.|+.+.+-..-..| ..++-.|...|.+..++++|.-+..++. ... | .
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3444555555666666666665432111111 2355566666666666666655554432 110 1 1
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhccC------CCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFELE------PHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
.....+.-+++..|..-+|.+.-+++.++. |-.......++++|...|+.+.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122233345556666666666666654432 112334445666666666666665555544
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.027 Score=49.98 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSC 501 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 501 (615)
.|+.-+..+ +.|++..|...|...++.. |+ ...+..|..++...|++++|..+|..+.++++-.|.. +.+-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455555543 5567888888888887752 22 2345567778888888888888888887765555543 66777
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 036661 502 MADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
|+.+..+.|+.++|...|+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 7788888888888888887775
No 240
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.37 E-value=1.6 Score=45.63 Aligned_cols=117 Identities=7% Similarity=-0.058 Sum_probs=68.8
Q ss_pred hcCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 036661 437 LNGEFVEALDLFHQMMELD-LRPNRV--TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLK 513 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (615)
...+.+.|...+....... +.+... ....+.......+...++...++.... ...+......-++.-.+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHH
Confidence 3456788888888775432 333322 333343333333225566666665442 1234455555566666888888
Q ss_pred HHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 514 EALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 514 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
.+...+..|+ ..-...-..-++.++...|+.++|...|+++..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888886 221222223355665667888888888888743
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.6 Score=40.68 Aligned_cols=45 Identities=7% Similarity=0.067 Sum_probs=19.4
Q ss_pred HHHhCChhHHHHHHHHHhcc----CCCCCCChHhHHHHHHccCChHHHHH
Q 036661 538 CKIHRNIEIGEYVAYRLFEL----EPHSAAPYVEMANIYALGGRWDGVAN 583 (615)
Q Consensus 538 ~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~ 583 (615)
+....++..|+..++.-.++ .|++..+...|...| ..|+.+++.+
T Consensus 200 ~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 33344555555555543332 233344444444443 3444444433
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.31 E-value=0.1 Score=41.64 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=55.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661 432 IAGCALNGEFVEALDLFHQMMELDLRP---NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR 508 (615)
Q Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 508 (615)
.....+.|++++|.+.|+.+...- +. ....-..++.+|.+.+++++|...+++.++-+.-.|++ -|.....++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 333445566666666666666541 11 12344445556666666666666666666443222322 12222233222
Q ss_pred cCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 509 KGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 509 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
....+.. +..+. ..-...+....|...|+++++.-|++..
T Consensus 95 ~~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 2211111 11111 0001123366888999999999998643
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.23 E-value=0.01 Score=34.16 Aligned_cols=32 Identities=25% Similarity=0.171 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
.+..++..+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566677777777777777777777777764
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.19 E-value=0.9 Score=40.89 Aligned_cols=196 Identities=19% Similarity=0.122 Sum_probs=124.7
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHhc-CCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-HHHHHHHH-HH
Q 036661 361 TVLSMISGCGQSGALELGKWFDNYACSG-GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTV-VSWTTMIA-GC 435 (615)
Q Consensus 361 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~~ 435 (615)
.+......+...+....+...+...... ........+......+...+++..+.+.+..... ++. ........ .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3334444444444444444444444331 2233344445555555566666666666665544 111 22222333 67
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcC
Q 036661 436 ALNGEFVEALDLFHQMMELDLRP----NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKG 510 (615)
Q Consensus 436 ~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 510 (615)
...|+++.+...+++.... .| ....+......+...++.+.+...+...... .+. ....+..+...+...+
T Consensus 141 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 141 YELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 7889999999999988653 33 2234444444567788999999999988843 223 3567777888888999
Q ss_pred ChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 511 KLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 511 ~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
+++.|...+.... ..|+ ...+......+...+..+.+...+++.++..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998886 4444 445555555555677899999999999999987
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.14 E-value=0.079 Score=41.80 Aligned_cols=52 Identities=10% Similarity=0.218 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 036661 455 DLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLL 506 (615)
Q Consensus 455 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 506 (615)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4568888888888899888999999999999988888877777888777533
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.066 Score=48.56 Aligned_cols=159 Identities=11% Similarity=0.000 Sum_probs=116.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhH----HHHHHHHHHhcCCh
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNH----YSCMADLLGRKGKL 512 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~ 512 (615)
-+|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+... -..+..++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899999886 455667787778899999999999999999885 33555433 33456677889999
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHHHHHHHH
Q 036661 513 KEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDGVANLRT 586 (615)
Q Consensus 513 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 586 (615)
++|.+.-++.. .+.|.-........+...|+..++.+..++-...-.. -..-|-..+-.|...+.|+.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999999987 3345445566667777889999999998876543222 12334455667788899999999998
Q ss_pred HHHhcCcccCCc
Q 036661 587 MMKRNQVKKFPG 598 (615)
Q Consensus 587 ~~~~~~~~~~~~ 598 (615)
+=.-....++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765555545443
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.05 E-value=1.5 Score=42.03 Aligned_cols=81 Identities=7% Similarity=0.124 Sum_probs=53.6
Q ss_pred CCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHH
Q 036661 15 RSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTT 94 (615)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 94 (615)
.|+.+-+|-.||+-+..++..++..+.+++|..- .+.-+..|..-+..-....++..+..+|.+.+.... +...|..
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~l 114 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWML 114 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHH
Confidence 4455557888888888888888888888888651 222344566666666666777888888887777653 3555555
Q ss_pred HHHH
Q 036661 95 MVDM 98 (615)
Q Consensus 95 l~~~ 98 (615)
.+.-
T Consensus 115 Yl~Y 118 (660)
T COG5107 115 YLEY 118 (660)
T ss_pred HHHH
Confidence 5543
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.04 E-value=0.029 Score=53.80 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh----hHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG----IWGTLLCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
..+..++.+|.+.|++++|+..|++.. ..|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555555555555555543 344322 3555555555555555555555555554
No 249
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.00 E-value=0.011 Score=34.05 Aligned_cols=31 Identities=23% Similarity=0.084 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
+|..++.++...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566677777777777777777777777775
No 250
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.97 E-value=0.73 Score=46.04 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=63.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC----------C
Q 036661 495 ELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA----------P 564 (615)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----------~ 564 (615)
+.++...+...+.+...+.-|.++|.++.. ...++......+++.+|..+.++.-+.-|+--- -
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 445666667777778888889999999872 224566667789999999999988877765211 1
Q ss_pred hHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 565 YVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
+...-.+|.+.|+-.||.++++++....
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 1223346667777777777777765433
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.91 E-value=1.1 Score=39.62 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=44.0
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhccCCCCCC---ChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 533 TLLCACKIHRNIEIGEYVAYRLFELEPHSAA---PYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
.++..|.+.|.+..|..-++.+++.-|+.+. .+..+..+|.+.|..++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3556678888888888888888887776544 4555677888899988888876655433
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.85 E-value=0.58 Score=45.48 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=69.6
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChh--hHHHHHHHH
Q 036661 463 FLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAG--IWGTLLCAC 538 (615)
Q Consensus 463 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~--~~~~l~~~~ 538 (615)
-..+..++.+.|+.++|++.++++.+.+...-...+...|+.+|...+.+.++..++.+.. .-|... +|...+-..
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 3456677788999999999999998754322234567789999999999999999999876 234333 333333222
Q ss_pred HHhCC---------------hhHHHHHHHHHhccCCCCCC
Q 036661 539 KIHRN---------------IEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 539 ~~~~~---------------~~~A~~~~~~~~~~~p~~~~ 563 (615)
+..++ ...|.+.+.++++.||.-|.
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 22222 23467889999999988653
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.85 E-value=0.17 Score=48.97 Aligned_cols=144 Identities=9% Similarity=0.004 Sum_probs=77.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661 435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE 514 (615)
Q Consensus 435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 514 (615)
.-+..++..-++.-++..+. .|+..+...++ +-.......++.+++++..+... ..+..- ......|..
T Consensus 178 AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~~lg~s-~~~~~~g~~-- 246 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----ASLGKS-QFLQHHGHF-- 246 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----Hhhchh-hhhhcccch--
Confidence 33555666667777777764 56654332222 22344557788888887764310 000000 000011111
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC--CCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 515 ALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH--SAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 515 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.+.+.+-..+|-..+-..+..++.+.|+.++|++.++++++..|. +..+...|+.+|...+.|.++..++.+--+
T Consensus 247 -~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 247 -WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred -hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111111111222334455666667777777777777777776654 345667777777777777777777777543
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.76 E-value=1.3 Score=39.25 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=111.1
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhcCCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHH
Q 036661 392 DNVMVCNALIDMYSKCGSIGDARELFYALPEK------TVVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNRVTFL 464 (615)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~ 464 (615)
|-...|+.-+ .-.+.|++++|.+.|+.+... ...+--.++.++.+.++++.|+..+++..... -.||. .|.
T Consensus 33 p~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 4444555444 456789999999999998762 23466667788899999999999999998853 23333 333
Q ss_pred HHHHHhh---c----cCch---HHHHHHHHHHHHhhCC---CCChhH------------HHHHHHHHHhcCChHHHHHHH
Q 036661 465 AVLQACT---H----AGFL---EKGWGYFNLMTKVYQV---NPELNH------------YSCMADLLGRKGKLKEALDFV 519 (615)
Q Consensus 465 ~l~~~~~---~----~~~~---~~a~~~~~~~~~~~~~---~~~~~~------------~~~l~~~~~~~g~~~~A~~~~ 519 (615)
..+.+++ . ..|. ..|..-|+.++.++.- .||+.. =..+++.|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3333333 2 2233 3455556666654321 122211 114667789999999999999
Q ss_pred HhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661 520 QSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 520 ~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 562 (615)
+++. .-|+ ...+..+..+|...|-.++|...-+-+-...|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 8887 2222 33566777899999999999887666666667754
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.78 Score=41.45 Aligned_cols=145 Identities=14% Similarity=0.090 Sum_probs=86.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 036661 434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLK 513 (615)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (615)
.....|++.+|...|+...... +-+......+..+|...|+.+.|..++..+-.+ .-.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777777777777652 223355666777777788888887777765422 00111111223345555555555
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCC--CCCCChHhHHHHHHccCChHH
Q 036661 514 EALDFVQSMPIKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP--HSAAPYVEMANIYALGGRWDG 580 (615)
Q Consensus 514 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~ 580 (615)
+...+-++.-..| |...-..+...+...|+.+.|...+-.+++.+- ++..+-..+..++.-.|.-+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 5555555554445 445556666777777888888877777776543 345666677777777664333
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.68 E-value=0.66 Score=37.78 Aligned_cols=126 Identities=9% Similarity=0.066 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 036661 428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG 507 (615)
Q Consensus 428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 507 (615)
...++..+...+.+.....+++.+...+ ..+....+.++..|++.+ ..+..+.++. ..+.......++.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 4456667777778888888888888776 356667788888887653 3444444442 122233444677777
Q ss_pred hcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHh-CChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 508 RKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIH-RNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
+.+-++++.-++.++.. +...+..+... ++++.|.+++++ ++++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77888888888877652 22233333334 778888887776 234556666665554
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.32 Score=44.32 Aligned_cols=175 Identities=12% Similarity=0.080 Sum_probs=114.8
Q ss_pred HHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHhhccCch
Q 036661 404 YSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLA----VLQACTHAGFL 476 (615)
Q Consensus 404 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~ 476 (615)
....|+..+|...++++.+ .|..++.-.-.+|...|+.+.-...++++.-. ..|+.+.|.. +.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456777888777777776 36677888888999999999888888888764 3455544333 34456789999
Q ss_pred HHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC----hhhHHHHHHHHHHhCChhHHHH
Q 036661 477 EKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSD----AGIWGTLLCACKIHRNIEIGEY 549 (615)
Q Consensus 477 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~----~~~~~~l~~~~~~~~~~~~A~~ 549 (615)
++|.+.-++.. .+++. .=.-.+....+.-.|+..++.++..+-. .+.. ...|-...-.+...+.++.|++
T Consensus 192 ~dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999988877 33443 3334457777888899999999998865 1111 1122233344556689999999
Q ss_pred HHHHHh--ccCCCCCC---ChHhHHHHHHccCChHHHH
Q 036661 550 VAYRLF--ELEPHSAA---PYVEMANIYALGGRWDGVA 582 (615)
Q Consensus 550 ~~~~~~--~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 582 (615)
+|.+-+ +++.++.. .|..+-.+..+...|.+-.
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld 306 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLD 306 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHH
Confidence 998654 35555542 2333344444444454443
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.58 E-value=0.058 Score=47.66 Aligned_cols=111 Identities=8% Similarity=0.081 Sum_probs=82.8
Q ss_pred Ccchhhhhcc--CCCchhcHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc----------
Q 036661 5 SLPPRLNKIY--RSSTINQWNSQIREAVDK-----NEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKL---------- 67 (615)
Q Consensus 5 ~~~~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------- 67 (615)
.++..|...+ .++.. +|-..+..+.+. +.++=....+..|++.|+.-|..+|+.||..+-+.
T Consensus 52 ~~e~~F~aa~~~~RdK~-sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKD-SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3456666666 55666 888888887664 56677778889999999999999999999887542
Q ss_pred ------CCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCC-hhHHHHhhccCC
Q 036661 68 ------SDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDR-LDCAYKLFDKMP 116 (615)
Q Consensus 68 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 116 (615)
...+-+..++++|...|+.||-.+-..|++++.+.+- ..+..++.-+|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2335677888999999999998888888888888765 334555555554
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.53 E-value=0.019 Score=33.64 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=21.8
Q ss_pred ChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 564 PYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 564 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
+|..||.+|.+.|+|++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999855
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=3.9 Score=42.67 Aligned_cols=174 Identities=10% Similarity=0.030 Sum_probs=110.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH----HhcCCchhHhHHHHHHhhcCCCCChHHHHHHHH
Q 036661 22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKAC----AKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVD 97 (615)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (615)
...-|..+.+..-+.-|+.+-..-. .+..+...+...| .+.|++++|...|-+.+..- +|+ .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHH
Confidence 4467888889999999988766532 2445555555554 46799999988877765431 222 2344
Q ss_pred HhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHH
Q 036661 98 MYAKCDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLL 174 (615)
Q Consensus 98 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 174 (615)
-|........--.+++.+.+ .+...-..|+.+|.+.++.++-.+..+.-. .|.. ..-....+..|.+.+-.+.|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 45555555555555666554 245566788999999999888877766544 3322 11244566667777777777
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcc
Q 036661 175 KSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIE 217 (615)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 217 (615)
..+-..... .......+ +-..+++++|.+++..++
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 666554432 22233333 345688999999999887
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.40 E-value=0.84 Score=43.48 Aligned_cols=165 Identities=11% Similarity=0.070 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhc---cCchHHHHHHHHHHHHhhCCCCChhHHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELD---LRPNRVTFLAVLQACTH---AGFLEKGWGYFNLMTKVYQVNPELNHYS 500 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 500 (615)
+...++-+|....+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+... .-.++++++.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 44456667999999999999999998742 11122223344556666 89999999999995543 5567778888
Q ss_pred HHHHHHHh---------cCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCC-hh---HHHHHHHH----Hhc---cCC
Q 036661 501 CMADLLGR---------KGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRN-IE---IGEYVAYR----LFE---LEP 559 (615)
Q Consensus 501 ~l~~~~~~---------~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~-~~---~A~~~~~~----~~~---~~p 559 (615)
.+++.|-. ....++|...|.+.- .+|+.-.-..++......|. ++ +..++.-+ +.+ .++
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 77777642 224677888888764 45553322222222223332 22 22222211 111 112
Q ss_pred -CCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 560 -HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 560 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
.+-..+..++.+..-.|++++|.+.+++|....
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 233455678899999999999999999998653
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.39 E-value=2 Score=41.73 Aligned_cols=151 Identities=13% Similarity=0.016 Sum_probs=84.3
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-hCCCCChhH
Q 036661 423 KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP---NRVTFLAVLQACTHAGFLEKGWGYFNLMTKV-YQVNPELNH 498 (615)
Q Consensus 423 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 498 (615)
....+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|+..++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888888899999999998888888743221 2334444455666778888888888887752 111111111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCChhhHHHHHHHHHHh------CChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 499 YSCMADLLGRKGKLKEALDF-VQSMPIKSDAGIWGTLLCACKIH------RNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
...+...+.. ..+..... ........-..++..++.-+... ++.+++...|+++.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000012233333333333 788999999999999999988888888887
Q ss_pred HHcc
Q 036661 572 YALG 575 (615)
Q Consensus 572 ~~~~ 575 (615)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7654
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.38 E-value=0.93 Score=45.59 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=11.0
Q ss_pred HHHHhhccCchHHHHHHHHHHHH
Q 036661 466 VLQACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 466 l~~~~~~~~~~~~a~~~~~~~~~ 488 (615)
+...+...++|++|.+.|..+.+
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHh
Confidence 33444444555555555555543
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.37 E-value=0.47 Score=46.92 Aligned_cols=161 Identities=14% Similarity=0.062 Sum_probs=109.2
Q ss_pred HHHHHHhcCChhHHHHHHH--HHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcC
Q 036661 25 QIREAVDKNEAHKALLLFR--RMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKC 102 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (615)
..+...-+++++++.+..+ ++.. .+ .....+.++.-+.+.|.++.|+++.. |+. .-.....+.
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~l 331 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQL 331 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHC
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhc
Confidence 4566777889999877775 2221 12 24457888899999999999998733 332 235566788
Q ss_pred CChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036661 103 DRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI 182 (615)
Q Consensus 103 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 182 (615)
|+++.|.++.++.. +...|..|.....+.|+++-|.+.|++... |..++-.+...|+.+...++.+...
T Consensus 332 g~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 332 GNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp T-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998876 566999999999999999999999998765 4566667777888888887777766
Q ss_pred HhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcc
Q 036661 183 HIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIE 217 (615)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 217 (615)
..| -++....++.-.|+.++..+++.+..
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 554 24555566666777777777766543
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.35 E-value=0.044 Score=42.15 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=52.1
Q ss_pred HHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 536 CACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
-+....|+.+.|++.|.+++.+-|.++.+|++.+.+|.-+|+.++|++-+++.++-
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 45667899999999999999999999999999999999999999999999998873
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.33 E-value=0.024 Score=35.07 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=29.5
Q ss_pred CCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 562 AAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 562 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
|..+..++.+|.+.|++++|+++++++.+..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999999987764
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.25 E-value=1.2 Score=37.50 Aligned_cols=128 Identities=9% Similarity=-0.004 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh----hHHHH
Q 036661 428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTF--LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL----NHYSC 501 (615)
Q Consensus 428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 501 (615)
|..++.... .+.+ +.....+++....-......+ ..+...+...+++++|...++.... .+.|. ..-..
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lR 131 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHH
Confidence 334444332 3333 455555666654211111222 2334567788889999888887763 22332 12334
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCC-CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 502 MADLLGRKGKLKEALDFVQSMPIK-SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
|.+.....|.+++|+..++....+ -........+..+...|+-++|+..|+++++.+++
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 667788888999999888887611 12223344557778888888888888888887654
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.13 E-value=0.48 Score=46.88 Aligned_cols=157 Identities=13% Similarity=-0.018 Sum_probs=90.2
Q ss_pred HHHHhcCChHHHHHHHh--cCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHH
Q 036661 402 DMYSKCGSIGDARELFY--ALPE-KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEK 478 (615)
Q Consensus 402 ~~~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 478 (615)
+...-.++++.+.++.+ ++.. -+....+.++.-+.+.|-++.|+.+.++-.. -.....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 33445677777555443 2211 1234466677777777777777765433221 1233456677777
Q ss_pred HHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661 479 GWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 479 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
|.++.+. .++...|..|++...+.|+++-|.+.+.+.. -+..|.-.|...|+.+.-.++.+.+.+..
T Consensus 337 A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7665432 2356678888888888888888888888866 34456666667788777777776665432
Q ss_pred CCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 559 PHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 559 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
-+.....++.-.|+.++..+++.+-
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2445555666778888887777543
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.12 E-value=0.15 Score=45.13 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=74.6
Q ss_pred HHHhhccCC--CCCchhHHHHHHHHHhc-----CChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcC-----------
Q 036661 108 AYKLFDKMP--DRDVASWNAMIVGFAQM-----GFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAK----------- 169 (615)
Q Consensus 108 a~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 169 (615)
.+..|.... ++|..+|-..+..|... +.++-....++.|.+.|+.-|..+|..|++.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345565555 57788888888877653 566777778889999999999999999998764332
Q ss_pred -----ChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCC
Q 036661 170 -----HLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCND 205 (615)
Q Consensus 170 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (615)
.-+-+..++++|..+|+.||..+-..+++++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223467888899999999999888888888887664
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.00 E-value=3 Score=38.72 Aligned_cols=62 Identities=5% Similarity=0.030 Sum_probs=27.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH
Q 036661 399 ALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCA--LNGEFVEALDLFHQMMELDLRPNR 460 (615)
Q Consensus 399 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~ 460 (615)
.-+..+.+.++.+.+.+.+.+|... ....+..++..+. .......+...+..+....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3344444455566665555555431 1123333333331 112334555555555544344443
No 271
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.98 E-value=0.038 Score=31.76 Aligned_cols=31 Identities=16% Similarity=0.035 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
+|..++..+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556667777777777777777777777774
No 272
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.81 E-value=0.16 Score=40.46 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=32.1
Q ss_pred HhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
..++.++++.++..+.-+.|+.+..-..-++++...|+|++|+.+++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35566666666666666666666666666666666666666666666655544
No 273
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.76 E-value=0.065 Score=48.71 Aligned_cols=107 Identities=12% Similarity=-0.006 Sum_probs=66.3
Q ss_pred HHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCCh
Q 036661 468 QACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNI 544 (615)
Q Consensus 468 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 544 (615)
.-|.++|.+++|+..|.+.. .+.| +..++..-+.+|.+..++..|..-...+. ...-...|...+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 34667777777777777666 3344 55555556667777777766665555544 111223455555555667899
Q ss_pred hHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHH
Q 036661 545 EIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGV 581 (615)
Q Consensus 545 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 581 (615)
++|.+-++.+++++|++-+ |-..|.+.....++
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 9999999999999998433 33444444444433
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.72 E-value=0.16 Score=41.41 Aligned_cols=72 Identities=11% Similarity=-0.071 Sum_probs=44.3
Q ss_pred HhcCChHHHHHHHHhCC-CCCChhhH-HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCCh
Q 036661 507 GRKGKLKEALDFVQSMP-IKSDAGIW-GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRW 578 (615)
Q Consensus 507 ~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 578 (615)
.+.++.+++..++..+. ..|..... ..-+..+...|++.+|+.+++.+.+-.|..+.+-..++.++...|+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 45567777777776665 45544333 22334555667777777777777666666666666666666666653
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.60 E-value=1.9 Score=36.94 Aligned_cols=160 Identities=20% Similarity=0.158 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661 425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA 503 (615)
Q Consensus 425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 503 (615)
+..||-+.--+...|+++.|.+.|+...+.+ |.. .+...-.-++.-.|++.-|.+-+...-+.-.-.|-...|.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4577888877888888888888888888763 332 2322223344556788877766655543211122222221111
Q ss_pred HHHHhcCChHHHHHHH-HhCCCCCChhhHHHHH-HHHHHhCChhHHHHHHHHHhccCCCC-------CCChHhHHHHHHc
Q 036661 504 DLLGRKGKLKEALDFV-QSMPIKSDAGIWGTLL-CACKIHRNIEIGEYVAYRLFELEPHS-------AAPYVEMANIYAL 574 (615)
Q Consensus 504 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 574 (615)
.+.-++.+|..-+ ++.. ..+..-|...+ ..|. |... -+.+++++..-..++ .++|+.|+.-|..
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL--gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL--GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH--hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 2334556665444 3333 22333332222 2221 1111 012222222222222 4688899999999
Q ss_pred cCChHHHHHHHHHHHhcCc
Q 036661 575 GGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 575 ~g~~~~A~~~~~~~~~~~~ 593 (615)
.|+.++|..+|+.....++
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 9999999999988766554
No 276
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.58 E-value=0.41 Score=37.82 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCchHHHHHHHHH
Q 036661 355 EVPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVMVCNALIDM 403 (615)
Q Consensus 355 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 403 (615)
..|+..+..+++.+|+..+++..|.++++.+.+ .+++.+..++..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456666666666666666666666666666554 4455555555555543
No 277
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.48 E-value=0.27 Score=41.27 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHh
Q 036661 435 CALNGEFVEALDLFHQMMELDLRPNRV-----TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGR 508 (615)
Q Consensus 435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 508 (615)
+...|++++|..-|.+.++. +++... .|..-..++.+.+.++.|+.-..+.+ .+.|+. .....-+.+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHHHHh
Confidence 44555555555555555554 122211 22222334445555555554444444 223331 122233445555
Q ss_pred cCChHHHHHHHHhCC
Q 036661 509 KGKLKEALDFVQSMP 523 (615)
Q Consensus 509 ~g~~~~A~~~~~~~~ 523 (615)
..++++|++-++++.
T Consensus 181 ~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 181 MEKYEEALEDYKKIL 195 (271)
T ss_pred hhhHHHHHHHHHHHH
Confidence 555555555555554
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.21 E-value=1.7 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=9.4
Q ss_pred HHHhcCChHHHHHHHHhCC
Q 036661 505 LLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~ 523 (615)
.+.+.|++.+|..+|+++.
T Consensus 53 l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 3444455555555555544
No 279
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.15 E-value=0.043 Score=31.47 Aligned_cols=31 Identities=6% Similarity=0.061 Sum_probs=26.1
Q ss_pred CChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 563 APYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
..|..+|.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4678999999999999999999999886543
No 280
>PRK09687 putative lyase; Provisional
Probab=94.11 E-value=4.9 Score=37.26 Aligned_cols=25 Identities=12% Similarity=-0.213 Sum_probs=11.1
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCC
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p 559 (615)
.+.+....|+. +|...++++.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33344444442 35555555554444
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.09 E-value=11 Score=41.27 Aligned_cols=114 Identities=15% Similarity=0.065 Sum_probs=64.6
Q ss_pred HHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661 403 MYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGY 482 (615)
Q Consensus 403 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 482 (615)
.--+.|-+.+|..++..-.+.-...|.+....+.....+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+
T Consensus 917 ~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~ 987 (1265)
T KOG1920|consen 917 YIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSL 987 (1265)
T ss_pred HHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHH
Confidence 3344455555555543322222334555555555666777776666554321 2345677777888888777
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 036661 483 FNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSD 527 (615)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 527 (615)
..++.. +-..-..+-..|+..+...++.-+|-++..+....|.
T Consensus 988 a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 988 AAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 776652 1111112235577777788888888888877764443
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=2.9 Score=34.49 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh-HHH--H
Q 036661 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN-HYS--C 501 (615)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~--~ 501 (615)
..|..-+. +.+.+..++|+.-|.++.+.|...=+. ............|+...|...|+++-.+..+ |... -.. .
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHH
Confidence 34444444 356788899999999999877443222 2223344567889999999999998855222 2211 111 2
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 502 MADLLGRKGKLKEALDFVQSMP--IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
-..++...|.++......+.+. .+| ....-..|.-+..+.|++.+|...|+.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2345667888888888887775 222 334556677777889999999999998876
No 283
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.05 E-value=2.7 Score=34.13 Aligned_cols=86 Identities=12% Similarity=0.025 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhc
Q 036661 22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAK 101 (615)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (615)
-..++..+...+.+.....+++.+...+. .++..++.++..|++... ......+.. . .+..-....+..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 35677777777888888888888877664 466677777777776532 222222221 1 122223334555555
Q ss_pred CCChhHHHHhhccC
Q 036661 102 CDRLDCAYKLFDKM 115 (615)
Q Consensus 102 ~g~~~~a~~~~~~~ 115 (615)
.+-++++.-++..+
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555554443
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=2.5 Score=37.04 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCH---HHHHHHHHH
Q 036661 395 MVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDL--RPNR---VTFLAVLQA 469 (615)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~ 469 (615)
..|+--..+|..+|.++.|-..+++.-+ .....++++|++++++....=. ..+. ..+..+-+.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3445555667777776665554443211 1234577778887777654210 1111 234445556
Q ss_pred hhccCchHHHHHHHHHHHH---hhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHh---CC--CC-CChhhHHHHHHHHH
Q 036661 470 CTHAGFLEKGWGYFNLMTK---VYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQS---MP--IK-SDAGIWGTLLCACK 539 (615)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~---~~--~~-p~~~~~~~l~~~~~ 539 (615)
+.+...+++|-..+.+-.. .+.--++. ..+-..+-.+.-..++..|...++. ++ .. .+..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 6777777776655554321 11112222 2344555666677899999999988 33 22 2445677777776
Q ss_pred HhCChhHHHHHHH
Q 036661 540 IHRNIEIGEYVAY 552 (615)
Q Consensus 540 ~~~~~~~A~~~~~ 552 (615)
..|+.+++..++.
T Consensus 239 d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 DEGDIEEIKKVLS 251 (308)
T ss_pred ccCCHHHHHHHHc
Confidence 5688888877654
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.88 E-value=2.2 Score=33.42 Aligned_cols=138 Identities=12% Similarity=0.144 Sum_probs=73.1
Q ss_pred HhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhH---HHHHHHHHHhcCCH
Q 036661 233 CTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSV---INTLISMYSKCGDI 309 (615)
Q Consensus 233 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 309 (615)
+.-.|.+++..++..+.... .+..-++.++--... ......++..+.+-|-..|... ...++..|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiD---aa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIID---AADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHH---H--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecch---hhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc-
Confidence 34467777777777777654 333444444432211 1122333333333332222221 1223333333332
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 036661 310 DSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGG 389 (615)
Q Consensus 310 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 389 (615)
+.......+.....+|.-+...+++.++... -.+++.....+..+|.+.|+..++.+++.+..+.|
T Consensus 85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2233455677788888888888888887753 36778888888888888888888888888888777
Q ss_pred CC
Q 036661 390 LK 391 (615)
Q Consensus 390 ~~ 391 (615)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 43
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.86 E-value=0.054 Score=31.12 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=26.4
Q ss_pred CChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 563 APYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.+|..+|.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999887553
No 287
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.81 E-value=0.1 Score=47.46 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=75.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChH
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWD 579 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 579 (615)
-+.-|.++|++++|++++.+.. ..| ++..+.....+|.+...+..|+.-...++.++.....+|...+.+-...|+..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3456889999999999998876 566 78888889999999999999999999999988877777888888878888888
Q ss_pred HHHHHHHHHHhc
Q 036661 580 GVANLRTMMKRN 591 (615)
Q Consensus 580 ~A~~~~~~~~~~ 591 (615)
+|.+-++..+..
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 888777766543
No 288
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.80 E-value=19 Score=42.90 Aligned_cols=309 Identities=10% Similarity=0.052 Sum_probs=168.6
Q ss_pred hccCchhhhhhhHHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHhc-cCCCCcccHHHHHHHHHhcCChhHH
Q 036661 267 SCVCPEALVQGRLVHSHGIHYGF--DLDVSVINTLISMYSKCGDIDSARFLFDG-MCDRTRVSWTAMISGYAQKGDLDEA 343 (615)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a 343 (615)
+-.+.+.+..|...++.-..... ......+..+...|...+++|....+... ...++ ...-|......|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHH
Confidence 44455666666666665311110 11223345555588888888887777663 33322 33345556678899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHH-HHHHHHHhcCChHHHHHHHhcCCC
Q 036661 344 LRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN-ALIDMYSKCGSIGDARELFYALPE 422 (615)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 422 (615)
...|+.+.+.+ ++...+++.++......|.++...-..+-..... .+....++ .-+.+-.+.++++....... .
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 99999988764 3446677777777667777776666555443332 23333333 33444567777777666655 4
Q ss_pred CChHHHHHH--HHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHH----------HH
Q 036661 423 KTVVSWTTM--IAGCALNG--EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLM----------TK 488 (615)
Q Consensus 423 ~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~ 488 (615)
.+..+|... +....+.. |.-.-....+.+.+.-+.| +.++...|.+..+.++.-++ ..
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455444 23333222 2222222334433321111 12222222222222222111 11
Q ss_pred hhCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-----ChhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661 489 VYQVNPEL------NHYSCMADLLGRKGKLKEALDFVQSMP----IKS-----DAGIWGTLLCACKIHRNIEIGEYVAYR 553 (615)
Q Consensus 489 ~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 553 (615)
..++.++. ..|..-...-....+..+-+--+++.. .+| -..+|...++.++..|.++.|...+-+
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~ 1695 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLN 1695 (2382)
T ss_pred hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 11333332 122221111111111222222222211 222 245788888999999999999999988
Q ss_pred HhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 554 LFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 554 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+.+..+ +..+...+..+...|+...|+.++++-.+...
T Consensus 1696 A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1696 AKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888774 68999999999999999999999998886543
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.49 E-value=1.8 Score=36.49 Aligned_cols=91 Identities=9% Similarity=-0.086 Sum_probs=68.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChhhHH-----HHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661 501 CMADLLGRKGKLKEALDFVQSMPIKSDAGIWG-----TLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG 575 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 575 (615)
.++..+...|++++|..-++.....|....+. .+.......|.+++|...+....+-.= .+......|+++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 35677889999999999999877455444443 344566778999999988776543211 123345679999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 036661 576 GRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 576 g~~~~A~~~~~~~~~~~ 592 (615)
|+-++|+..|++.+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999999887
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.47 E-value=14 Score=40.49 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=87.8
Q ss_pred CChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHhhccCchHHHHHHH
Q 036661 408 GSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLA----VLQACTHAGFLEKGWGYF 483 (615)
Q Consensus 408 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~ 483 (615)
++++.|+.-+.++.. ..|.-.+..-.+.|-+.+|+.+ ..|+...+.. ...-+...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~~---~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE---TYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcCc---cccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 345555554444431 1222233333344445555443 3455544443 444455667777777777
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhH--HHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 484 NLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIW--GTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
+..-+ ....+.+|..+|++.+|+.+..++....+.... ..|...+..+++.-+|-++.++...-
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---- 1028 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---- 1028 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----
Confidence 66542 233567788889999999888887744443332 56777777888888777777666531
Q ss_pred CCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 562 AAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 562 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
.......|++...|++|+.+-...
T Consensus 1029 ---~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ---HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 223445566666777776665443
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.44 E-value=4 Score=34.01 Aligned_cols=57 Identities=14% Similarity=0.069 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661 296 INTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA 352 (615)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 352 (615)
+..+++.+...|++-+|.++.+....-+......++.+-.+.+|...=..+++-..+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566667777777777777665444445555566666666665544444444443
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.31 E-value=1.9 Score=35.54 Aligned_cols=128 Identities=14% Similarity=0.038 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHH---H-
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGT---L- 534 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~---l- 534 (615)
..|...+. +.+.+..++|+.-|..+.+. |...-+ -............|+..+|...|.++. ..|.+...+. +
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 45554444 45678899999999999864 433222 122335567788999999999999986 3333333322 2
Q ss_pred -HHHHHHhCChhHHHHHHHHHh-ccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 535 -LCACKIHRNIEIGEYVAYRLF-ELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 535 -~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
...+...|-+++...-.+.+- +-+|-....-..|+-+-.+.|++.+|...|+.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 233456888888777666553 34565556677889999999999999999999876
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=12 Score=39.25 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=36.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661 501 CMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLF 555 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 555 (615)
.++..+....+.+.+..+.+.... .++..|..++..+.+.+..+.-.+...+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 355666677777777777777762 266778778887777776665555555544
No 294
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.29 E-value=0.07 Score=48.67 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=64.1
Q ss_pred hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661 508 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR 585 (615)
Q Consensus 508 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 585 (615)
..|.+++|++.|.... .+|....+..-.+++.+.+....|++-+..+++++|+....|-..+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4566777777776665 33344455556667777778888888888888888888888888888888888888888888
Q ss_pred HHHHhcCccc
Q 036661 586 TMMKRNQVKK 595 (615)
Q Consensus 586 ~~~~~~~~~~ 595 (615)
....+.++..
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 8777766643
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.25 E-value=0.13 Score=30.03 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661 531 WGTLLCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
+..++..|.+.|++++|+.++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777888888888888888885543
No 296
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.18 Score=43.58 Aligned_cols=82 Identities=11% Similarity=0.068 Sum_probs=55.6
Q ss_pred cCChHHHHHHHHhCC-CCCCh-hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHH
Q 036661 509 KGKLKEALDFVQSMP-IKSDA-GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRT 586 (615)
Q Consensus 509 ~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 586 (615)
..+++.|+..+.+.. ..|.. ..|..-+.++.+..+++.+..--.+++++.|+.....+.++..+.....+++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345556666665554 55555 3445556666667777777777777777777777777777777777777777777777
Q ss_pred HHHh
Q 036661 587 MMKR 590 (615)
Q Consensus 587 ~~~~ 590 (615)
+..+
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 7643
No 297
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.00 E-value=0.11 Score=43.05 Aligned_cols=108 Identities=9% Similarity=0.004 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHH-------HHhCC-CCCC-hhhHHHHHHHHHHhC-
Q 036661 476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK---GKLKEALDF-------VQSMP-IKSD-AGIWGTLLCACKIHR- 542 (615)
Q Consensus 476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~-------~~~~~-~~p~-~~~~~~l~~~~~~~~- 542 (615)
++.|.+.++..... -+.|...++.-+.++... .+..++.++ |+++. ..|+ ..++..++.++...+
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 44555555554322 234455555544444433 222333333 33333 4554 346666666654422
Q ss_pred ----------ChhHHHHHHHHHhccCCCCCCChHhHHHHHHc-cCChHHHHHHHHHHHhcCc
Q 036661 543 ----------NIEIGEYVAYRLFELEPHSAAPYVEMANIYAL-GGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 543 ----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~ 593 (615)
.+++|...|+++.+.+|+| .+|.+ .+...+|-++..++.+++.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQGL 138 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 2555666666667777774 34432 2344555555555555443
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.95 E-value=3.1 Score=34.62 Aligned_cols=135 Identities=11% Similarity=0.108 Sum_probs=86.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCC--ChhHHHHhhccC
Q 036661 38 ALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCD--RLDCAYKLFDKM 115 (615)
Q Consensus 38 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~ 115 (615)
..++++.+.+.+++|+...+..++..+.+.|.+....++ +..++-+|.......+-.+.... -..-+.+++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 356777778889999999999999999999987655444 33444444443333332222211 133455555554
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 036661 116 PDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI 184 (615)
Q Consensus 116 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 184 (615)
. ..+..++..+...|++-+|+++...... .+......++.+....+|...--.+++...+.
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 2577888899999999999998877532 22233456677777777776666666666554
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.88 E-value=0.083 Score=29.95 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=15.3
Q ss_pred hHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 565 YVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
+..+|.+|.+.|++++|.+.++++.+..
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3445555555555555555555555443
No 300
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.85 E-value=8.3 Score=36.10 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=81.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHhhcccchhhHHHHHHHHHHhcC-----CCCchHH
Q 036661 326 SWTAMISGYAQKGDLDEALRLFFAMEAA-GEVP---DLVTVLSMISGCGQSGALELGKWFDNYACSGG-----LKDNVMV 396 (615)
Q Consensus 326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 396 (615)
.|..+.+++-+.-++.+++.+-+.-... |..| -.....++-.++...+.++++.+.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555555555544433221 2222 11223345556666677777777777665521 1122356
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC-------CChH------HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPE-------KTVV------SWTTMIAGCALNGEFVEALDLFHQMME----LDLRPN 459 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~ 459 (615)
+..|...|.+..|+++|.-+..+..+ .|.. ....+..++...|....|.+.-++..+ .|-+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66777777777777665544332221 2221 122233445555666666555555433 332222
Q ss_pred H-HHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 460 R-VTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 460 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
. .....+.+.|...|+.+.|+.-|+.+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 244455566666777766666655544
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.72 E-value=2.2 Score=41.19 Aligned_cols=131 Identities=14% Similarity=0.179 Sum_probs=81.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 036661 433 AGCALNGEFVEALDLFHQMMEL-DLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGK 511 (615)
Q Consensus 433 ~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 511 (615)
.-....|+...|-+-+...... .-.|+.... ....+...|+++.+...+....+ -+.....+...+++...+.|+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhh
Confidence 3344567777776655544443 223443333 23345677888888887777664 233445567778888888888
Q ss_pred hHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh
Q 036661 512 LKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE 567 (615)
Q Consensus 512 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 567 (615)
+++|...-.-|. .-.++.............|-++++...+++++.++|.....|+.
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 888888887776 22233344434444556678888888888888888765444444
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.70 E-value=2.1 Score=36.37 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHH-
Q 036661 122 SWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADF--VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS- 198 (615)
Q Consensus 122 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 198 (615)
.+..+...|.+.|+.+.|++.|.++.+....|.. ..+..+++.....+++..+..........--.+.......-+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556666666667777777776666665433332 2345566666666666666666555544322211111111111
Q ss_pred ----HHHccCCHHHHHHHHHhcc
Q 036661 199 ----AYAKCNDLKMAELVFRGIE 217 (615)
Q Consensus 199 ----~~~~~~~~~~A~~~~~~~~ 217 (615)
.+...+++..|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 1234577877777776665
No 303
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.63 E-value=0.13 Score=27.39 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=19.2
Q ss_pred CChHhHHHHHHccCChHHHHHHHH
Q 036661 563 APYVEMANIYALGGRWDGVANLRT 586 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A~~~~~ 586 (615)
.....++.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888888775
No 304
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=0.43 Score=41.48 Aligned_cols=59 Identities=7% Similarity=-0.161 Sum_probs=34.9
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
+..++...|++-++++.-..++...|+|..+|+..+.+....=+.++|..-+.++++..
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33444455666666666666666666666666666666666666666666665555443
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.48 E-value=0.22 Score=28.12 Aligned_cols=31 Identities=16% Similarity=-0.037 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 531 WGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
+..++.++.+.|+.++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456777888899999999999999988874
No 306
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=5.9 Score=34.62 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=53.8
Q ss_pred HHHHhhcc-CchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC--hhhH---HHH
Q 036661 466 VLQACTHA-GFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD--AGIW---GTL 534 (615)
Q Consensus 466 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~---~~l 534 (615)
+...|... .+++.|+..|+..-+-+.-... ...+...+..-...+++.+|+++|+++. ...+ ..-| ..+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33344333 4566666666665532221111 1233344445566788889999988875 1111 1111 111
Q ss_pred H--HHH-HHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 535 L--CAC-KIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 535 ~--~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
+ ..| .-..+.-.+...+++..+++|.-..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 1 223 23467788888899999999975443
No 307
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.41 E-value=13 Score=37.40 Aligned_cols=126 Identities=11% Similarity=0.081 Sum_probs=87.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHh
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPN-NLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMY 99 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (615)
.|..+|..--.....+.+...+..+... .|- -.-|......=.+.|..+.+..+|++.+. +++.+...|...+..+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 5666666655555566666677777653 233 22445555555677888999999998875 4567777777766655
Q ss_pred hc-CCChhHHHHhhccCCC------CCchhHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 036661 100 AK-CDRLDCAYKLFDKMPD------RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLV 149 (615)
Q Consensus 100 ~~-~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 149 (615)
.. .|+.+...+.|+.... .+...|...|..-..++++.....+++...+.
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 44 4777777777777653 34567888888888888899999999988874
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.33 E-value=3.7 Score=34.92 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHH--HH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS--CM 502 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 502 (615)
.+..+...|.+.|+.+.|++.+.++.+....|.. ..+..+++.....+++..+...+.++........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556666777777777777777777665444443 2455666666677777777777666654322111111111 11
Q ss_pred --HHHHHhcCChHHHHHHHHhCC
Q 036661 503 --ADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 503 --~~~~~~~g~~~~A~~~~~~~~ 523 (615)
+-.+...|++.+|.+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 122345678888877776665
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.28 E-value=7.2 Score=37.77 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
...+|..++..+++.|+++.|...+.++...++. .+.+....+.++...|+..+|...++...+...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999999999986632 467788889999999999999999998887333
No 310
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.19 E-value=0.52 Score=42.82 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
++..++..+...|+.+.+...++++++.+|-+-..|..+..+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555556666677777777777777776666777777777777777777777666654
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.07 E-value=19 Score=38.33 Aligned_cols=219 Identities=12% Similarity=-0.021 Sum_probs=116.5
Q ss_pred cccchhhHHHHHHHHHHhcCCCCc----hH---HHHHH-HHHHHhcCChHHHHHHHhcCCC--------CChHHHHHHHH
Q 036661 370 GQSGALELGKWFDNYACSGGLKDN----VM---VCNAL-IDMYSKCGSIGDARELFYALPE--------KTVVSWTTMIA 433 (615)
Q Consensus 370 ~~~~~~~~a~~~~~~~~~~~~~~~----~~---~~~~l-~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~ 433 (615)
....++.+|..++.++...-..|+ .. .++.| .......|+++.|.++-+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345677777777777655322221 11 22222 1223456788888777665433 35567788888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHH--HHHhhccCc--hHHHHHHHHHHHHhhCCCCCh-----hHHHH
Q 036661 434 GCALNGEFVEALDLFHQMMELDLRPNRV---TFLAV--LQACTHAGF--LEKGWGYFNLMTKVYQVNPEL-----NHYSC 501 (615)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l--~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~-----~~~~~ 501 (615)
+..-.|++++|..+.++..+..-.-+.. .|..+ ...+..+|. +.+....+......+...... .++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887776542222322 22222 224556673 333444444444332222222 33444
Q ss_pred HHHHHHhc-CChHHHHHHHHhCC-CCCC--hhhHH--HHHHHHHHhCChhHHHHHHHHHhccCCCC--CCChHh---H--
Q 036661 502 MADLLGRK-GKLKEALDFVQSMP-IKSD--AGIWG--TLLCACKIHRNIEIGEYVAYRLFELEPHS--AAPYVE---M-- 568 (615)
Q Consensus 502 l~~~~~~~-g~~~~A~~~~~~~~-~~p~--~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~---l-- 568 (615)
+..++.+. +...+|..-++--. ..|. ..... .++......|+.++|...+.++..+--++ ...|.. .
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44555541 22222222222221 2222 22222 56677778999999999988887644332 222221 1
Q ss_pred HHHHHccCChHHHHHHHHHH
Q 036661 569 ANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~~ 588 (615)
......+|+.++|.....+-
T Consensus 666 ~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 666 LILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhcccCCHHHHHHHHHhc
Confidence 22234678888888877663
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.06 E-value=0.2 Score=28.63 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=26.4
Q ss_pred CChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 563 APYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
.+|..++.+|...|++++|.+.|++..+-.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468899999999999999999999987643
No 313
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.78 E-value=8.6 Score=34.86 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.+......|...|.+.+|.++-++++.++|-+...+..+..+|...|+--.|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444557788899999999999999999999999999999999999998888888888754
No 314
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.56 E-value=2.2 Score=38.87 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCChhHHHH
Q 036661 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK----VYQVNPELNHYSC 501 (615)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ 501 (615)
.++..++..+...++.+.+.+.++++.... +-+...|..++.+|...|+...|+..|+.+.+ +.|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345666777777778888888888887763 44667788888888888888888877777654 3466666655544
Q ss_pred HHHH
Q 036661 502 MADL 505 (615)
Q Consensus 502 l~~~ 505 (615)
+.+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.32 E-value=0.38 Score=30.93 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661 531 WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV 566 (615)
Q Consensus 531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 566 (615)
+-.+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345667788999999999999999999999765443
No 316
>PRK10941 hypothetical protein; Provisional
Probab=91.19 E-value=0.79 Score=41.77 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 531 WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.+.+-.++.+.++++.|.+..+.++.+.|+++.-+.-.|-+|.+.|.+..|..-++...++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 345556778888888888888888888888888888888888888888888888888877665
No 317
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.16 E-value=4.6 Score=37.67 Aligned_cols=92 Identities=9% Similarity=0.114 Sum_probs=47.6
Q ss_pred HHHHHHHHhcccCCC-----CcchHHHHHHHHhcCCC----hhhHHHHHHHHHHCCCCCCHH--hHHHHHHhccCchh--
Q 036661 207 KMAELVFRGIEEGLR-----TVVSWNSIIGGCTYGDK----FDDSLNFYRHMIYDGFRPDVT--TVVSLLSSCVCPEA-- 273 (615)
Q Consensus 207 ~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~-- 273 (615)
..|..+|+.|.+..| +...+..++.. ..++ .+.+...|+.+...|...+.. ....++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 355666666665533 22333333322 2222 345566677777766654433 33334433333222
Q ss_pred hhhhhHHHHHHHHhcCCCChhHHHHHH
Q 036661 274 LVQGRLVHSHGIHYGFDLDVSVINTLI 300 (615)
Q Consensus 274 ~~~a~~~~~~~~~~~~~~~~~~~~~l~ 300 (615)
...+..+++.+.+.|+++....|..+.
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHH
Confidence 346677777777777777666655443
No 318
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.12 E-value=29 Score=38.67 Aligned_cols=256 Identities=10% Similarity=-0.078 Sum_probs=130.3
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC
Q 036661 313 RFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD 392 (615)
Q Consensus 313 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 392 (615)
..+...+..++...-...+..+.+.+.. .+...+..... .++...-...+.++...+........+..+.. .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 3444445566666666666666666543 34444444442 23433333444444333221111122222222 24
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH 472 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 472 (615)
+..+-...+..+...+.. ....+...+..+|...-...+.++...+..+. +..+.. .++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 445555555555543321 12234455556777666666666666554322 222222 5555555555666666
Q ss_pred cCchHH-HHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHH
Q 036661 473 AGFLEK-GWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVA 551 (615)
Q Consensus 473 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 551 (615)
.+..+. +...+..+.+ .++..+-...+.++.+.|..+.+...+..+...++...-...+.++...+. +++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 554332 3344444443 355666667777777777765554555555545565555556666666554 3455555
Q ss_pred HHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 552 YRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 552 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
..+++ +|+ ..+-...+.++.+.+.-.++...+.++.+
T Consensus 844 ~~~L~-D~~-~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT-DPH-LDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc-CCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55553 332 45555666666665334456666666554
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.72 E-value=0.042 Score=45.10 Aligned_cols=52 Identities=12% Similarity=-0.021 Sum_probs=21.8
Q ss_pred HHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHH
Q 036661 127 IVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH 178 (615)
Q Consensus 127 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 178 (615)
+..+.+.+.++....+++.+...+...+....+.++..+++.+..+...+.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3334444444444444444444333333444444444444444434443333
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.58 E-value=3.9 Score=35.01 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=55.8
Q ss_pred HhcCChHHHHHHHHhCCCCC--ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHH
Q 036661 507 GRKGKLKEALDFVQSMPIKS--DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDG 580 (615)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 580 (615)
.+.|+ ++|.+.|-.+...| +...+...+..|....|.+++++++-+++++.+. |+..+.+|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34455 77888887776333 3334444445556678999999999999987643 58899999999999999998
Q ss_pred HH
Q 036661 581 VA 582 (615)
Q Consensus 581 A~ 582 (615)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.57 E-value=2 Score=41.50 Aligned_cols=135 Identities=13% Similarity=0.098 Sum_probs=83.2
Q ss_pred HHHHHhcCChHHHHH-HHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchH
Q 036661 401 IDMYSKCGSIGDARE-LFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLE 477 (615)
Q Consensus 401 ~~~~~~~g~~~~A~~-~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 477 (615)
+.--...|+.-.|-+ ++..+.. .++.........+...|+++.+...+...... +.....+...+++.....|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 333445677665543 3433332 23333333344456779999998888776654 3455677888888889999999
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661 478 KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC 538 (615)
Q Consensus 478 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 538 (615)
+|..+-.-|... .+ -+.++....+-.--..|-++++.-.+++.. .+|....|...+...
T Consensus 375 ~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~ 435 (831)
T PRK15180 375 EALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSST 435 (831)
T ss_pred HHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccc
Confidence 999988888743 22 223322222222334577888988888875 556666666666543
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.52 E-value=0.37 Score=29.08 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=21.7
Q ss_pred ChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 564 PYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 564 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
++..++.+|...|++++|.+++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 567888889999999999998888765
No 323
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.40 E-value=2.3 Score=33.40 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=47.0
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhCC--CCC--ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 493 NPELNHYSCMADLLGRKGKLK---EALDFVQSMP--IKS--DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
.++..+--.++.++.+..+.+ +.+.+++++. ..| +......|.-++.+.++++.++++...+++.+|+|+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 455555555666666655433 3455555554 223 23355567777888999999999999999999987553
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.04 E-value=21 Score=35.31 Aligned_cols=161 Identities=10% Similarity=0.022 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHH
Q 036661 357 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIA 433 (615)
Q Consensus 357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 433 (615)
.|.....+++..+...-....++.+-.+|...| .+...|..++++|... ..+.-..+++++.+ .|+..-..|+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 344445555555555555555555555554433 2334445555555554 33444444443332 23333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC--CH---HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661 434 GCALNGEFVEALDLFHQMMELDLRP--NR---VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR 508 (615)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~~~~~~~p--~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 508 (615)
-|-+ ++.+.+..+|.+....=++. +. ..|..+... -..+.+..+.+..++.++.|...-...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55555555555555432110 10 123222221 1235566666666666555554444555555566667
Q ss_pred cCChHHHHHHHHhCC
Q 036661 509 KGKLKEALDFVQSMP 523 (615)
Q Consensus 509 ~g~~~~A~~~~~~~~ 523 (615)
..++.+|++++..+.
T Consensus 218 ~eN~~eai~Ilk~il 232 (711)
T COG1747 218 NENWTEAIRILKHIL 232 (711)
T ss_pred ccCHHHHHHHHHHHh
Confidence 777777777777665
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.83 E-value=0.73 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.014 Sum_probs=14.2
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661 532 GTLLCACKIHRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p 559 (615)
..++..+...|++++|...++++++.+|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3444444455555555555555555444
No 326
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=14 Score=32.50 Aligned_cols=93 Identities=5% Similarity=-0.100 Sum_probs=54.1
Q ss_pred HHHHHHHhc-CChHHHHHHHHhCC-----CCCCh---hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC------CCh
Q 036661 501 CMADLLGRK-GKLKEALDFVQSMP-----IKSDA---GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA------APY 565 (615)
Q Consensus 501 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~ 565 (615)
.++..|... .+++.|+..++... .+.+. ..+......-...+++.+|+.+|+++..-.-+++ ..|
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 345555443 56666666666653 11111 2333333444567899999999999977554433 233
Q ss_pred HhHH-HHHHccCChHHHHHHHHHHHhcCc
Q 036661 566 VEMA-NIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 566 ~~l~-~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+.-+ -++.-.++.-.+...+++..+..+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 3333 334444777777777777766554
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.50 E-value=0.67 Score=28.39 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=23.4
Q ss_pred HhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 566 VEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 566 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
..|+.+|...|+.+.|+++++++...|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4688899999999999999998886553
No 328
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.24 E-value=3.7 Score=37.64 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhccCCCCCCChHh
Q 036661 545 EIGEYVAYRLFELEPHSAAPYVE 567 (615)
Q Consensus 545 ~~A~~~~~~~~~~~p~~~~~~~~ 567 (615)
-.|.+...++.+.+|.-|..+..
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHH
Confidence 35788889999999986654443
No 329
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.87 E-value=20 Score=33.35 Aligned_cols=100 Identities=9% Similarity=0.001 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChhHH---HHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHH
Q 036661 158 VMGLTQAAIHAKHLSLL---KSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGC 233 (615)
Q Consensus 158 ~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 233 (615)
+..+..++...+..+.. ..+++.+.+. .+..+.++..-++.+.+.++.+.+.+.+.+|....+ ....+...+..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 44455555555544333 3333333222 222344555555666666667777777766665422 334444444433
Q ss_pred h--cCCChhhHHHHHHHHHHCCCCCCH
Q 036661 234 T--YGDKFDDSLNFYRHMIYDGFRPDV 258 (615)
Q Consensus 234 ~--~~~~~~~a~~~~~~m~~~~~~p~~ 258 (615)
- .......+...+..+....+.|..
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 1 122234555555555544444443
No 330
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.78 E-value=1.3 Score=37.94 Aligned_cols=129 Identities=8% Similarity=0.049 Sum_probs=84.6
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh-hHHHHHHHHHHhCChh
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHRNIE 545 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~ 545 (615)
.|-..|-+.-|.-=|.... .+.|+ +.+|+-++--+...|+++.|.+.|+... ..|... +....+-++.--|+++
T Consensus 74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 4556666666666666655 55676 4678888888999999999999999886 444322 3333333445578999
Q ss_pred HHHHHHHHHhccCCCCCCChHhHHHHHHc--cCChHHHHHHHHHHHhcCcccCCceeEEEec
Q 036661 546 IGEYVAYRLFELEPHSAAPYVEMANIYAL--GGRWDGVANLRTMMKRNQVKKFPGQSLVHIN 605 (615)
Q Consensus 546 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 605 (615)
-|.+-+.+-.+.+|++| |..| |+|.. .=+..+|..-+.+-.+. . ....|+|..++
T Consensus 151 LAq~d~~~fYQ~D~~DP--fR~L-WLYl~E~k~dP~~A~tnL~qR~~~-~-d~e~WG~~iV~ 207 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP--FRSL-WLYLNEQKLDPKQAKTNLKQRAEK-S-DKEQWGWNIVE 207 (297)
T ss_pred hhHHHHHHHHhcCCCCh--HHHH-HHHHHHhhCCHHHHHHHHHHHHHh-c-cHhhhhHHHHH
Confidence 99999999999999865 3333 55553 34566776665433221 1 22457776544
No 331
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.78 E-value=0.72 Score=33.89 Aligned_cols=52 Identities=17% Similarity=0.033 Sum_probs=29.7
Q ss_pred ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC--CCChHhHHHHHHccCCh
Q 036661 527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS--AAPYVEMANIYALGGRW 578 (615)
Q Consensus 527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~ 578 (615)
|......+...+...|++++|.+.+-.+++.+|+. ...-..+..++.-.|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 34455566666667777777777777777666543 44455566666666653
No 332
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.74 E-value=35 Score=36.07 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=30.0
Q ss_pred hCChhHHHHHHHHHhccC---CCCC-CCh-----HhHHHHHHccCChHHHHHHHHHHH
Q 036661 541 HRNIEIGEYVAYRLFELE---PHSA-APY-----VEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 541 ~~~~~~A~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
.|+..+..+....+..+. |+.. ..| ..+.+.|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677766665555555433 2222 233 234556888899999988877653
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.62 E-value=27 Score=34.62 Aligned_cols=176 Identities=10% Similarity=0.034 Sum_probs=117.0
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 036661 391 KDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVT-FLAVL 467 (615)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~ 467 (615)
+.+-....+++..+.....+.-++-+-.+|.. .+-..+..++++|... ..+.-..+|+++.+.. -|... -..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 34444566777888777777777777777665 5667888999999988 6688899999999874 34443 44445
Q ss_pred HHhhccCchHHHHHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCChhhHHHHHHH
Q 036661 468 QACTHAGFLEKGWGYFNLMTKVYQVNPE------LNHYSCMADLLGRKGKLKEALDFVQSMP----IKSDAGIWGTLLCA 537 (615)
Q Consensus 468 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~ 537 (615)
..|.+ ++...+..+|.++... +-|. ...|..+...- ..+.+..+.+..++. ...-...+..+..-
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 44544 8889999999988753 3342 12444444321 345666666666654 11122333444455
Q ss_pred HHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661 538 CKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL 574 (615)
Q Consensus 538 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 574 (615)
|....|+.+|+++++..++.+..+..+...++.-+..
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 6677899999999999999887776666666555544
No 334
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.49 E-value=9.6 Score=35.60 Aligned_cols=63 Identities=11% Similarity=-0.023 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHCCCCCCH--HHHHHHHHhhcccch--hhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661 341 DEALRLFFAMEAAGEVPDL--VTVLSMISGCGQSGA--LELGKWFDNYACSGGLKDNVMVCNALIDM 403 (615)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (615)
+.+..+|+.+.+.|...+. .....++..+....+ ..++.++++.+.+.++++....|..+.-.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 4567777777777765433 334444444433322 45778888888888888887776655433
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=5 Score=40.18 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=49.3
Q ss_pred HccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHH
Q 036661 201 AKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLV 280 (615)
Q Consensus 201 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (615)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..++-.+...|+-+....+
T Consensus 648 l~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 34455555555444332 445566666666666666666666555432 23333334444444433333
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036661 281 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM 319 (615)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (615)
-....+.|. .|.-..+|...|+++++.+++.+-
T Consensus 715 a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 333333331 223334555667777776666443
No 336
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.33 E-value=0.81 Score=37.42 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChH
Q 036661 58 PFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLE 137 (615)
Q Consensus 58 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 137 (615)
..++..+.+.+.++....+++.+...+...+...++.++..|++.++.++..++++.... .-...++..+.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 345667777788888888888888776667788889999999999888888888884333 33445667777777777
Q ss_pred HHHHHHHHhH
Q 036661 138 KVLCLFYNMR 147 (615)
Q Consensus 138 ~a~~~~~~m~ 147 (615)
++.-++..+.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 7777666553
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=4.4 Score=37.04 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=70.6
Q ss_pred cCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC-----CC--CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC
Q 036661 185 GVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG-----LR--TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD 257 (615)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 257 (615)
|.+....+...++..-....+++.+...+-++... .| +..+|-.++ -.-++++++-++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 44445555555555555567788888887776653 11 222332222 23467788888888888999999
Q ss_pred HHhHHHHHHhccCchhhhhhhHHHHHHHHhc
Q 036661 258 VTTVVSLLSSCVCPEALVQGRLVHSHGIHYG 288 (615)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (615)
.++++.++..+.+.+++..|.++.-.+....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999888887777654
No 338
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.80 E-value=40 Score=35.66 Aligned_cols=82 Identities=6% Similarity=-0.170 Sum_probs=47.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccC---CCCCCChHhHHHHHHccCCh
Q 036661 502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELE---PHSAAPYVEMANIYALGGRW 578 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~ 578 (615)
-+..+...|+..+|...+..+....+......+.......|..+.++....+....+ -..|..|......+.+.-..
T Consensus 413 ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v 492 (644)
T PRK11619 413 RVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI 492 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence 345566778888888887776633444455555555667777777777665442211 11233455555555555555
Q ss_pred HHHHH
Q 036661 579 DGVAN 583 (615)
Q Consensus 579 ~~A~~ 583 (615)
+.+.-
T Consensus 493 ~~~lv 497 (644)
T PRK11619 493 PQSYA 497 (644)
T ss_pred CHHHH
Confidence 55553
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.54 E-value=41 Score=35.48 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=15.2
Q ss_pred HHhcCChHHHHHHHHhCCCCC
Q 036661 506 LGRKGKLKEALDFVQSMPIKS 526 (615)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~p 526 (615)
+...|++++|++.++++..-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457899999999999988444
No 340
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.92 E-value=2 Score=37.80 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhCChhH-------HHHHHHHHhccC--CC----CCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccC
Q 036661 530 IWGTLLCACKIHRNIEI-------GEYVAYRLFELE--PH----SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKF 596 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~-------A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 596 (615)
.+..+.+.|...|+.+. |...|+++.+.. |. .......+|.++.+.|++++|.+.|.++...+-...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 44555566666666444 444444444433 22 235667788899999999999999998887655443
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.89 E-value=2.7 Score=36.15 Aligned_cols=62 Identities=18% Similarity=0.084 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 500 SCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
...+..+.+.+..++|+...+.-. .+| +...-..++..++-.|++++|..-++-+-++.|+.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344556677777778777776544 444 44456667777777888888888888777777764
No 342
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=86.87 E-value=0.59 Score=45.13 Aligned_cols=99 Identities=7% Similarity=0.012 Sum_probs=59.7
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCC
Q 036661 467 LQACTHAGFLEKGWGYFNLMTKVYQVNPELN-HYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRN 543 (615)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~ 543 (615)
+..+...++++.|..++.+++ .+.|+-. .|..-..++.+.+++..|+.=+.++. ..|. ...|..-+.++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 344556667777777777777 3455433 33333466677777777766655554 3343 2344555566666777
Q ss_pred hhHHHHHHHHHhccCCCCCCChHhH
Q 036661 544 IEIGEYVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 544 ~~~A~~~~~~~~~~~p~~~~~~~~l 568 (615)
+.+|+..+++...+.|+++.+-..+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 7777777777777777765544433
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.86 E-value=15 Score=31.96 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-hCCCCChhHHHHHHHH
Q 036661 428 WTTMIAGCALNGEFVEALDLFHQMMELDLRP-NRVTFLAVLQACTHAGFLEKGWGYFNLMTKV-YQVNPELNHYSCMADL 505 (615)
Q Consensus 428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 505 (615)
.+..++.+.+.+...+++...++-++. +| |..+-..++..++-.|++++|..-++-...- ....+....|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344566777888899999988887776 45 4456777888899999999998877766521 0122334455555543
Q ss_pred HHhcCChHHHH-HHHHhC--C---CCCChhhHHHHHHH--HHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 506 LGRKGKLKEAL-DFVQSM--P---IKSDAGIWGTLLCA--CKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 506 ~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
+.+. ++|..- + ..|.+.-...+..+ +...|..+.+..+-+.+++.-|..+.
T Consensus 82 -------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 -------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred -------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 2222 233221 1 22333333333333 33344666677778888888776443
No 344
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.85 E-value=0.81 Score=26.21 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=13.6
Q ss_pred CCChHHHHHHHHHhhcCCChhHHH
Q 036661 86 WSDIFVQTTMVDMYAKCDRLDCAY 109 (615)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~a~ 109 (615)
|.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555566666666666665554
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.71 E-value=5.3 Score=29.67 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661 443 EALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD 504 (615)
Q Consensus 443 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 504 (615)
+..+-++.+...++-|++......+++|.+.+++..|.++++.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455566666667778888888888888888888888888888887654432 225655543
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=7.6 Score=39.01 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=18.7
Q ss_pred hcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHH
Q 036661 305 KCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALR 345 (615)
Q Consensus 305 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 345 (615)
-.++++.|..++..++++ ..+.++.-+-++|-.++|++
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~ 635 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE 635 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh
Confidence 346666666655555422 22334444445555555544
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.62 E-value=44 Score=34.80 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=45.2
Q ss_pred ChHHHHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC---ChHHHHH
Q 036661 511 KLKEALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG---RWDGVAN 583 (615)
Q Consensus 511 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~ 583 (615)
+.+.+...+.+....-+......+...|.. ..+.+.|...+.++.+.. +....+++..+...- .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 344555555555433334444444444432 235777777777776665 666777777765431 1567777
Q ss_pred HHHHHHhcC
Q 036661 584 LRTMMKRNQ 592 (615)
Q Consensus 584 ~~~~~~~~~ 592 (615)
++++..+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 777766544
No 348
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.44 E-value=6.1 Score=36.16 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
++++++.++..=++-|+-||..+++.++..+.+.+++.+|..+.-.+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666666666555544
No 349
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.15 E-value=49 Score=34.94 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhc---cCchHHHHHHHHHHH
Q 036661 461 VTFLAVLQACTH---AGFLEKGWGYFNLMT 487 (615)
Q Consensus 461 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 487 (615)
.-+..|+..|.+ ..+..+|.+++--+.
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 445666666553 557778888777665
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.98 E-value=17 Score=29.47 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=29.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHhhccCchHHHHHHHHHHHH
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNRVTFLA-VLQACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~ 488 (615)
..++++++..++..|.-. +|+..-... -...+...|++++|..+|+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 356667777777766653 554432221 23345666777777777777664
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.97 E-value=1 Score=24.58 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=26.0
Q ss_pred CChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 563 APYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
.+|..++.+|...|++++|...+++..+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467889999999999999999998887543
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.81 E-value=2.1 Score=42.50 Aligned_cols=99 Identities=14% Similarity=0.004 Sum_probs=67.2
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHH
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPEL--NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIG 547 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A 547 (615)
-.|+...|...+..+. ...|-. .....|+..+.+.|-.-+|..++.+.. ....+.++..+++++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 4677777877777665 333322 234456677777777777777776654 333445666777777778888888
Q ss_pred HHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 548 EYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 548 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
++.++++++.+|+++.+-..|-.+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888888777776655443
No 353
>PRK09687 putative lyase; Provisional
Probab=85.74 E-value=30 Score=32.12 Aligned_cols=73 Identities=11% Similarity=-0.018 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC 470 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 470 (615)
+..+-...+.++.+.|+......+.+.+..++ .....+.++...|+. +|+..+.++.+. .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 33344444455555555332223333333233 123445555555553 466666666553 34544444444433
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.37 E-value=53 Score=34.60 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=34.6
Q ss_pred HHHHHccCCHHHHHHHHHhcccCCC---CcchHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661 197 ISAYAKCNDLKMAELVFRGIEEGLR---TVVSWNSIIGGCTYGDKFDDSLNFYRHMIY 251 (615)
Q Consensus 197 ~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 251 (615)
++-+.+.+.+++|+.+-+......+ ....+..+|..+...|++++|-...-.|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 3455566677777777766555433 334566667777777777777766666643
No 355
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.30 E-value=27 Score=33.79 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhccCCC-CCCChHhHHHHHH-ccCChHHHHHHHHHHHh
Q 036661 532 GTLLCACKIHRNIEIGEYVAYRLFELEPH-SAAPYVEMANIYA-LGGRWDGVANLRTMMKR 590 (615)
Q Consensus 532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 590 (615)
...+....+.|-+..|.+..+-++.++|. ||-.....++.|+ +.++++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34456677899999999999999999998 8888888888776 77888878888877655
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.28 E-value=44 Score=34.76 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhCCCCCChhhHHHHHHHHH----HhCChhHH
Q 036661 475 FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK---GKLKEALDFVQSMPIKSDAGIWGTLLCACK----IHRNIEIG 547 (615)
Q Consensus 475 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A 547 (615)
+...|..++...... | .|+.... ++.++... .+...|.++|..+...-.......+...+. ...+.+.|
T Consensus 308 d~~~A~~~~~~aA~~-g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-G-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc-C-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 455566666666532 2 2333222 33333322 245667777766652222222222332222 23477777
Q ss_pred HHHHHHHhccCCCCCCChHhHHHHHHcc-CChHHHHHHHHHHHhcCcc
Q 036661 548 EYVAYRLFELEPHSAAPYVEMANIYALG-GRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 548 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 594 (615)
..+++++-+.++ +.+...++..+.-. ++++.+.-.+..+.+.+..
T Consensus 384 ~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 384 FAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 777777777762 44444444443322 7777777776666665553
No 357
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.17 E-value=30 Score=31.67 Aligned_cols=32 Identities=22% Similarity=-0.011 Sum_probs=21.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 036661 291 LDVSVINTLISMYSKCGDIDSARFLFDGMCDR 322 (615)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (615)
-++.....+...|.+.|++.+|+..|-.-..+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~ 119 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDP 119 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 36677788888888999888888777554333
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.78 E-value=29 Score=31.15 Aligned_cols=218 Identities=16% Similarity=0.154 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-----cCCCCchHH
Q 036661 327 WTAMISGYAQKGDLDEALRLFFAMEAA---GE--VPDLVTVLSMISGCGQSGALELGKWFDNYACS-----GGLKDNVMV 396 (615)
Q Consensus 327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 396 (615)
.-.++..+.+.+++++.+..+.++..- .+ .-+..+.+.++.-.+.+.+.+....+++.-.+ .+-..-..+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344556666666666666666655321 11 12233445555544444444444333332211 011111122
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC--------CC-------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPE--------KT-------VVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNR 460 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~ 460 (615)
-.-|...|...+++.+..++++++.. .| ...|..-+..|...++-.....++++..... --|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 33455566666666666666665532 01 2356666677777777777777777665421 23444
Q ss_pred HHHHHHHHHh-----hccCchHHHHHHHHHHHHhhCC--CCChh---HHHHHHHHHHhcCC----hHHHHHHHHhCCCCC
Q 036661 461 VTFLAVLQAC-----THAGFLEKGWGYFNLMTKVYQV--NPELN---HYSCMADLLGRKGK----LKEALDFVQSMPIKS 526 (615)
Q Consensus 461 ~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p 526 (615)
.... .++-| .+.|.+++|..-|-++-+.+.- .|... -|..|+..+.+.|- -++|. -....|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence 4333 33333 3566777765433333322221 12221 24445566665541 11111 011345
Q ss_pred ChhhHHHHHHHHHHhCChhHHHHH
Q 036661 527 DAGIWGTLLCACKIHRNIEIGEYV 550 (615)
Q Consensus 527 ~~~~~~~l~~~~~~~~~~~~A~~~ 550 (615)
.......++.+|.. ++..+-+++
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~I 325 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERI 325 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHH
Confidence 55566677777653 344333333
No 359
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.43 E-value=1.8 Score=25.87 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
.+++.+...|...|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35667778888888888888888887753
No 360
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.03 E-value=5 Score=37.03 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC--hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD--AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
+|..=+.-|.+..++..|...|.+.. ..|+ ...|.....+....||+..|+.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34444566778889999999998765 2333 34556666666778999999999999999999999999999999
Q ss_pred HHccCChHHHHHHHHHH
Q 036661 572 YALGGRWDGVANLRTMM 588 (615)
Q Consensus 572 ~~~~g~~~~A~~~~~~~ 588 (615)
+....++++|....+..
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999977777766544
No 361
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=17 Score=36.58 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=28.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH------------HHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNR------------VTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
..+-++++...|.-.... ..|+. .+...+...+..+|+.+.|..++++..
T Consensus 250 hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred cchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 345566776666666553 13321 233444456667777777777776653
No 362
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.60 E-value=2.6 Score=22.22 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 036661 501 CMADLLGRKGKLKEALDFVQ 520 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~ 520 (615)
.++.++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555543
No 363
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.41 E-value=39 Score=30.76 Aligned_cols=54 Identities=7% Similarity=0.090 Sum_probs=37.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHhhccCchHHHHHHHHH
Q 036661 432 IAGCALNGEFVEALDLFHQMMELDLRPNRV-------TFLAVLQACTHAGFLEKGWGYFNL 485 (615)
Q Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 485 (615)
..-..+.+++++|+..+.++...|+..+.. +...+...|...|++....+....
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 334456788999999999998888776644 345566778888877665555443
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.38 E-value=6.5 Score=39.27 Aligned_cols=135 Identities=13% Similarity=0.006 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHhhcc--CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCC-CCC--Chhh
Q 036661 457 RPNRVTFLAVLQACTHA--GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG-RKGKLKEALDFVQSMP-IKS--DAGI 530 (615)
Q Consensus 457 ~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~p--~~~~ 530 (615)
-|+..+...++.-.... ...+-+-.++-.|.+ ...|--.+.+ ++-.|. -.|+...|...+..+. ..| +...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35555555544433221 122334444444442 3334333333 233444 4699999999998875 444 3346
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 531 WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
+..|.+...+.|-.-+|-.++.+.+.++...|-++..+|++|....+.+.|++.++...+....
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 6778888888999999999999999999888999999999999999999999999999886653
No 365
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.22 E-value=18 Score=26.73 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661 440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA 503 (615)
Q Consensus 440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 503 (615)
|.-++.+-++.+...++-|++......+++|.+.+++..|.++++.++.+.+. ....|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 34456666777777778888888888888888888888888888877754332 333454443
No 366
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.20 E-value=4.2 Score=30.23 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=36.1
Q ss_pred HHhCChhHHHHHHHHHhccCCCC---------CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 539 KIHRNIEIGEYVAYRLFELEPHS---------AAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 539 ~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.+.||+.+|.+.+.+.+.....+ ..+...++.++...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777777777776543221 12345677888888999999888888765
No 367
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.85 E-value=1.8 Score=24.00 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 542 RNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
|+.+.|..+++++++..|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999998888888887776654
No 368
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.11 E-value=78 Score=33.43 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcC
Q 036661 94 TMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMG 134 (615)
Q Consensus 94 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 134 (615)
..+..+...|++++|-...-.|...+..-|.--+..+...+
T Consensus 397 ~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 397 TYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccc
Confidence 33444444444444444444444444444444444333333
No 369
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.11 E-value=2.7 Score=36.46 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 506 LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
....|+.+.|.+++.++. .-| ....|..+....-+.|+++.|.+.|++.++++|++...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 445566666666666665 222 33456556666666666666666666666666665443
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.88 E-value=14 Score=31.80 Aligned_cols=73 Identities=15% Similarity=0.001 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhh--CCCCChhHHHHHHHHHHhcCChHHH
Q 036661 442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVY--QVNPELNHYSCMADLLGRKGKLKEA 515 (615)
Q Consensus 442 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 515 (615)
+.|.+.|-++...+.--++.....|..-| ...+.+++..++.+..+-. +-.+++..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555444222223333333222 2345555555555544321 1134445555555555555555544
No 371
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.65 E-value=4.5 Score=33.86 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hhccCchHHHHHHHHHHHHhh----CCCCCh-hHHHHHHHHHHhcC--
Q 036661 441 FVEALDLFHQMMELDLRPNRVTFLAVLQA---CTHAGFLEKGWGYFNLMTKVY----QVNPEL-NHYSCMADLLGRKG-- 510 (615)
Q Consensus 441 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g-- 510 (615)
++.|.+.++.-...+ +.|...++.-..+ +++.....++.+++++...++ .+.|+. ..+..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 466667676655543 4444444443333 444555567877887776543 467775 56777777776543
Q ss_pred --ChHHHHHHHHh
Q 036661 511 --KLKEALDFVQS 521 (615)
Q Consensus 511 --~~~~A~~~~~~ 521 (615)
+..+|.++|++
T Consensus 86 ~~d~~~A~~~F~k 98 (186)
T PF06552_consen 86 TPDTAEAEEYFEK 98 (186)
T ss_dssp ---HHHHHHHHHH
T ss_pred cCChHHHHHHHHH
Confidence 33344444444
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.93 E-value=5.9 Score=27.85 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=20.9
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHH
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDF 518 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 518 (615)
.++..++|+..|....+...-+|+. .++..++.+|...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555432222221 2344444555555555554443
No 373
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.83 E-value=8.9 Score=30.32 Aligned_cols=69 Identities=10% Similarity=-0.034 Sum_probs=52.2
Q ss_pred CCChhhHHHHHHHHHHhC---ChhHHHHHHHHHhc-cCCC-CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 525 KSDAGIWGTLLCACKIHR---NIEIGEYVAYRLFE-LEPH-SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 525 ~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.++..+-..+.+++.+.. +..+.+.+++.+++ -.|. ..+..+.|+-.+++.++|+.++++.+.+.+..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 455556666777777655 55677888999886 4454 356777888999999999999999998887654
No 374
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=78.78 E-value=3.6 Score=37.46 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=56.9
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHH-HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh
Q 036661 491 QVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGT-LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE 567 (615)
Q Consensus 491 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 567 (615)
.+..|+..|...+.--.+.|.+.+.-.++.+.. ..| +...|.. ...-+...++++.+..++.+.++++|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 345566666666665556667777777776665 333 4556644 3344567899999999999999999999998876
Q ss_pred HHHH
Q 036661 568 MANI 571 (615)
Q Consensus 568 l~~~ 571 (615)
....
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 6443
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.73 E-value=25 Score=26.21 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=57.4
Q ss_pred CchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHH
Q 036661 69 DFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRL 148 (615)
Q Consensus 69 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 148 (615)
..++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|-.++...-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 346666666666554422 222333345567888999999999999988999988777553 56777777777777777
Q ss_pred cCCcCChhHH
Q 036661 149 VGIQADFVTV 158 (615)
Q Consensus 149 ~~~~p~~~~~ 158 (615)
.| .|....|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 3444343
No 376
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.46 E-value=32 Score=33.67 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=35.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHhhc--cCchHHHHHHHHHHHH
Q 036661 435 CALNGEFVEALDLFHQMMELDLRPNRV--TFLAVLQACTH--AGFLEKGWGYFNLMTK 488 (615)
Q Consensus 435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~ 488 (615)
+.+.+++..|.++++++... ++++.. .+..+..+|.. .-++.+|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34677888888888888876 555544 44445555543 4567788888877664
No 377
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.40 E-value=1.2e+02 Score=33.98 Aligned_cols=248 Identities=12% Similarity=0.015 Sum_probs=136.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 036661 290 DLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGC 369 (615)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 369 (615)
.+++.+....+..+.+.+..+....+...+..++...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 4566666666666666665444444444444555444444444444432211112223333322 4555555555555
Q ss_pred cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHH-HHHHH
Q 036661 370 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVE-ALDLF 448 (615)
Q Consensus 370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 448 (615)
...+..+ ...+...+ + .++..+-...+.++.+.+..+ .+...+..++...-...+.++...+..+. +...+
T Consensus 709 ~~~~~~~-~~~l~~~L-~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AALFAAAL-G---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HHHHHHHh-c---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 4433111 11222222 1 445555555566666555433 23344555677777777777777665443 34455
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh
Q 036661 449 HQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDA 528 (615)
Q Consensus 449 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 528 (615)
..+.. .+|...-...+.++...|..+.+...+..+.+ .++..+-...+.++.+.+. +++...+..+...|+.
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCH
Confidence 55543 56677777777788877776555444444443 2555566667777777765 4566666666667777
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
..-...+.++.+.+....+...+.++++
T Consensus 853 ~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 853 DVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 7666677777665445567777777665
No 378
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.04 E-value=18 Score=26.69 Aligned_cols=45 Identities=7% Similarity=-0.063 Sum_probs=28.7
Q ss_pred HHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036661 138 KVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI 182 (615)
Q Consensus 138 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 182 (615)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555566666666777777777777766666666555
No 379
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.67 E-value=54 Score=29.56 Aligned_cols=188 Identities=12% Similarity=0.054 Sum_probs=119.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHhhcccchhhHHHHHHHHHHh---cC--CCCchHHHHHHHHHHHhc
Q 036661 336 QKGDLDEALRLFFAMEAAGEVPDL---VTVLSMISGCGQSGALELGKWFDNYACS---GG--LKDNVMVCNALIDMYSKC 407 (615)
Q Consensus 336 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~ 407 (615)
+..++++|+.-|++..+..-.-.. .....++....+.+++++....+.++.. .. -..+....|++++....+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345789999999998875322223 3455678888999999999988888764 11 134556678888777777
Q ss_pred CChHHHHHHHhcCCC-----CCh----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCH-------HHHHHHH
Q 036661 408 GSIGDARELFYALPE-----KTV----VSWTTMIAGCALNGEFVEALDLFHQMMELDL----RPNR-------VTFLAVL 467 (615)
Q Consensus 408 g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~-------~~~~~l~ 467 (615)
.+.+--..+++.-.. .|. .+-..|...|...+.+.+..++++++...-- ..|. ..|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 776666555553221 222 2445678888888999999999998876421 1221 2455556
Q ss_pred HHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHH----HHHHHhcCChHHHHHH-HHhCC
Q 036661 468 QACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCM----ADLLGRKGKLKEALDF-VQSMP 523 (615)
Q Consensus 468 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~-~~~~~ 523 (615)
..|..+.+-.....+++....-....|-+.....+ +....+.|++++|..- |+...
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 67777777777778888776433334544333222 2345677888887543 34443
No 380
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.90 E-value=10 Score=34.31 Aligned_cols=62 Identities=21% Similarity=0.147 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 532 GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
..+-.++...++++.|....++.+.++|++|.-+.--|-+|.+.|-+.-|++-+....++.+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 34446678889999999999999999999999899999999999999999999988766554
No 381
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=76.77 E-value=5.1 Score=36.40 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=33.7
Q ss_pred HhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661 507 GRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 507 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 568 (615)
.+.|+.++|..+|+.+. ..| .+..+..++...-.+++.-+|-+.|-+++.+.|.+..++.+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 35566666666666554 233 233444444444445566666666666666666665554443
No 382
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.69 E-value=4.9 Score=34.94 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=34.3
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 470 CTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
..+.++.+.+.+++.++. ...|. ...|-.+...-.+.|+++.|.+.+++..
T Consensus 5 ~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 345677777777777776 33333 4566677777777777777777777765
No 383
>PRK10941 hypothetical protein; Provisional
Probab=76.64 E-value=15 Score=33.75 Aligned_cols=65 Identities=9% Similarity=-0.061 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661 501 CMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY 565 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 565 (615)
.+-.+|.+.++++.|+.+.+.+. ..| ++.-++-.+-.|.+.|.+..|..-++..++..|++|.+-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34456667777777777777765 344 344566666777777777777777777777777765543
No 384
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.54 E-value=2.3e+02 Score=36.25 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=12.8
Q ss_pred HHHHHccCCHHHHHHHHHhcc
Q 036661 197 ISAYAKCNDLKMAELVFRGIE 217 (615)
Q Consensus 197 ~~~~~~~~~~~~A~~~~~~~~ 217 (615)
.-.|...|.+++|..+|++..
T Consensus 2489 a~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2489 ALSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHHhhhHHHHhhHHHHHH
Confidence 344556677777776666543
No 385
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.16 E-value=30 Score=25.80 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=43.5
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036661 401 IDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFL 464 (615)
Q Consensus 401 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 464 (615)
+..+...|++++|..+.+.+..||...|.+|-. .+.|-.+++..-+.+|...| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344667888888888888888888888876644 35666677777777777776 56555544
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.92 E-value=8.7 Score=27.05 Aligned_cols=48 Identities=15% Similarity=0.062 Sum_probs=35.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHH
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNR--VTFLAVLQACTHAGFLEKGWGYFN 484 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~ 484 (615)
..++.++|+..|+...+.-..|.. .++..++.+|+..|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999998886333332 367778889999999988877543
No 387
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.57 E-value=23 Score=26.48 Aligned_cols=46 Identities=7% Similarity=-0.084 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661 138 KVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIH 183 (615)
Q Consensus 138 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 183 (615)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444555555666666666666666666666666666665554
No 388
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.51 E-value=71 Score=29.86 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=27.8
Q ss_pred ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC---------------ChHHHHHHHHHHHhcCc
Q 036661 543 NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG---------------RWDGVANLRTMMKRNQV 593 (615)
Q Consensus 543 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 593 (615)
|.++|...|+++-+... ......++ .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 66666666666666555 34444444 444444 66666666666665554
No 389
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.38 E-value=63 Score=29.19 Aligned_cols=87 Identities=2% Similarity=0.071 Sum_probs=50.3
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChh-HHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 513 KEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIE-IGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 513 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
.+-++.+.++. .+.+-..|..--......|+.. .=+++.+.++..+..|-.+|...-+++...+.|+.-+.+-.+|.
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELL 174 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444443 2234445544444444455555 55566666666666666667777777776677777777777777
Q ss_pred hcCcccCCce
Q 036661 590 RNQVKKFPGQ 599 (615)
Q Consensus 590 ~~~~~~~~~~ 599 (615)
+..+....++
T Consensus 175 e~Di~NNSAW 184 (318)
T KOG0530|consen 175 EEDIRNNSAW 184 (318)
T ss_pred HHhhhccchh
Confidence 6666655543
No 390
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.29 E-value=2.2e+02 Score=34.89 Aligned_cols=105 Identities=15% Similarity=0.045 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--------hhh
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSD--------AGI 530 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--------~~~ 530 (615)
.+|....+...+.|.++.|...+-.+.+. + .| ..+-..+..+...|+...|+.++++.. ..|+ +..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 57888888888899999998776666542 2 33 345567788888999999999888754 1121 222
Q ss_pred HHHHHH--------HH-HHhCCh--hHHHHHHHHHhccCCCCCCChHhHH
Q 036661 531 WGTLLC--------AC-KIHRNI--EIGEYVAYRLFELEPHSAAPYVEMA 569 (615)
Q Consensus 531 ~~~l~~--------~~-~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~l~ 569 (615)
-+.++. -| ...++. ++.++.|+++.+..|.....++.+|
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 222211 12 223443 4667888999999997777777776
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.20 E-value=20 Score=32.47 Aligned_cols=22 Identities=5% Similarity=-0.064 Sum_probs=9.9
Q ss_pred HHHHHhcCCchhHhHHHHHHhh
Q 036661 61 AKACAKLSDFLYSQMIHGHIVK 82 (615)
Q Consensus 61 l~~~~~~~~~~~a~~~~~~~~~ 82 (615)
|-.|.+.+.+..+.++-...+.
T Consensus 125 ILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHh
Confidence 3334444444444444444443
No 392
>PRK12798 chemotaxis protein; Reviewed
Probab=74.11 E-value=91 Score=30.44 Aligned_cols=181 Identities=15% Similarity=0.203 Sum_probs=115.0
Q ss_pred cCChHHHHHHHhcCCC----CChHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhhccCchH
Q 036661 407 CGSIGDARELFYALPE----KTVVSWTTMIAG-CALNGEFVEALDLFHQMMELDLRPNR----VTFLAVLQACTHAGFLE 477 (615)
Q Consensus 407 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 477 (615)
.|+..+|.+.+..+.. +....+-.|+.+ .....++..|+++|++..=. .|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5778888888877765 234455556554 34567889999999888754 4543 23444455667889999
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHH-HHHHHHhcCC---hHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661 478 KGWGYFNLMTKVYQVNPELNHYSC-MADLLGRKGK---LKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYR 553 (615)
Q Consensus 478 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 553 (615)
++..+-......|...|-...|.. +...+.+.++ .+.-.+++..|...-....|..+...-...|+.+-|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988888877777666666554443 3344444432 333444445554222345777777778889999999999999
Q ss_pred HhccCCCCCCChHhHHHHHH-----ccCChHHHHHHHHHHHh
Q 036661 554 LFELEPHSAAPYVEMANIYA-----LGGRWDGVANLRTMMKR 590 (615)
Q Consensus 554 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 590 (615)
+..+.+. ...-...+.+|. -..++++|.+.+..+-.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9887643 333333444443 34557777777766543
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.86 E-value=8.5 Score=23.63 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcC
Q 036661 126 MIVGFAQMGFLEKVLCLFYNMRLVG 150 (615)
Q Consensus 126 li~~~~~~g~~~~a~~~~~~m~~~~ 150 (615)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777777777777777776543
No 394
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.45 E-value=4.4 Score=26.12 Aligned_cols=31 Identities=6% Similarity=-0.122 Sum_probs=25.5
Q ss_pred ChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 564 PYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 564 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
.++.++-.+.+.|+|++|.++.+.+++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3567888999999999999999999876654
No 395
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.45 E-value=25 Score=31.20 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV 566 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 566 (615)
.+..+..++...|++-++++...++. ..| +...+..-+.+....=+..+|.+-++++++++|.-..+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 35556778888999999999988887 334 4556666666666667899999999999999997444433
No 396
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.10 E-value=46 Score=30.30 Aligned_cols=84 Identities=7% Similarity=-0.069 Sum_probs=48.9
Q ss_pred HHHHHHhcCChHHHHHHH----hcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----h
Q 036661 400 LIDMYSKCGSIGDARELF----YALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA-----C 470 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-----~ 470 (615)
=|++++..+++.++.... +.-.+-.+.....-|-.|.+.+.+..+.++-..-....-.-+...|..++.. +
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 367777888887765543 2222234455566666677777777777776665552111122335554443 3
Q ss_pred hccCchHHHHHHH
Q 036661 471 THAGFLEKGWGYF 483 (615)
Q Consensus 471 ~~~~~~~~a~~~~ 483 (615)
.=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4467777777776
No 397
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.90 E-value=52 Score=26.72 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=49.9
Q ss_pred HHHHHHHhhcCCChhHHHHhhccCCC---------CCchhHHHHHHHHHhcCC-hHHHHHHHHHhHHcCCcCChhHHHHH
Q 036661 92 QTTMVDMYAKCDRLDCAYKLFDKMPD---------RDVASWNAMIVGFAQMGF-LEKVLCLFYNMRLVGIQADFVTVMGL 161 (615)
Q Consensus 92 ~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 161 (615)
.|.++.-.+..+.+.....+++.+.. .+..+|++++.+.++..- ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555555555555554431 355678888888765555 34456777778777778888888888
Q ss_pred HHHHHhcC
Q 036661 162 TQAAIHAK 169 (615)
Q Consensus 162 l~~~~~~~ 169 (615)
++++.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 88776553
No 398
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.47 E-value=13 Score=21.56 Aligned_cols=17 Identities=6% Similarity=-0.142 Sum_probs=7.7
Q ss_pred HHHHHHHhCChhHHHHH
Q 036661 534 LLCACKIHRNIEIGEYV 550 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~ 550 (615)
++..+...|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 34444445555555555
No 399
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.25 E-value=1.3e+02 Score=30.15 Aligned_cols=239 Identities=10% Similarity=0.003 Sum_probs=129.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhhccc------chhhHHHHHHHHHHhc-CC-CCchHHHHHHHHHHHhcCChH-HH
Q 036661 343 ALRLFFAMEAAGEVPDLVTVLSMISGCGQS------GALELGKWFDNYACSG-GL-KDNVMVCNALIDMYSKCGSIG-DA 413 (615)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~-~A 413 (615)
..++|++..+. -|+...+...|..|... ........+++...+. +. +.....|..+.-.+....... -|
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 34566655543 34445555555554322 1334445555555442 22 334455666666665555443 34
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHhc-CChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHhhccCc-hHHH-H-HHHHHHHH
Q 036661 414 RELFYALPEKTVVSWTTMIAGCALN-GEFVEAL-DLFHQMMELDLRPNRVTFLAVLQACTHAGF-LEKG-W-GYFNLMTK 488 (615)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a-~-~~~~~~~~ 488 (615)
..+..+....+...|..-+....+. .+++--. +.+......-..+-...|.... .++ .+.. + .++..+.
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~- 452 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL- 452 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH-
Confidence 4444455566666666655555432 2222211 1222222221122223333333 222 2211 1 1222222
Q ss_pred hhCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH--HHhCChhHHHHHHHHHhccCCCCCC
Q 036661 489 VYQVNPELN-HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC--KIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 489 ~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
. -..|+.. .-+.+.+-+.+.|-..+|...+.+.. .+|+...+..++..- ...-+...+...|+.++.-...++.
T Consensus 453 s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 453 S-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD 531 (568)
T ss_pred H-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH
Confidence 2 2234443 34457788888899999999998876 445556666666442 2334588888899988876667788
Q ss_pred ChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 564 PYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 564 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.|...-..-...|..+.+-.++.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 888887777788988888888777654
No 400
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.02 E-value=1.4e+02 Score=29.98 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcC-CCCChHHHHHHHHHhhcCCChhHHHHhhccC
Q 036661 37 KALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSP-FWSDIFVQTTMVDMYAKCDRLDCAYKLFDKM 115 (615)
Q Consensus 37 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 115 (615)
....+|+....+ .+.|...|...+.-|.+.+.+.+...+|..|+..+ ..|+..++.+ ..-|-....++.|..+|.+-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA-~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA-KWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh-hhHHhhccchHHHHHHHHHH
Confidence 344555555443 33377788888888888887888888888887654 2333333322 22233333477777777765
Q ss_pred CC
Q 036661 116 PD 117 (615)
Q Consensus 116 ~~ 117 (615)
.+
T Consensus 167 LR 168 (568)
T KOG2396|consen 167 LR 168 (568)
T ss_pred hh
Confidence 54
No 401
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.95 E-value=79 Score=28.47 Aligned_cols=162 Identities=7% Similarity=0.057 Sum_probs=76.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 036661 431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH-AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK 509 (615)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 509 (615)
++..+-+.++++++..+++++...+...+..--+.+-.+|-. .|....+++++..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455566777888888888888877655565555544444422 23344455555555433211111 1112222222111
Q ss_pred ------CChHHHHHHHHhCC----CCCChhhH-HHHH-HHHH---H--hC-----ChhHHHHHHHHHhc-----cCCCCC
Q 036661 510 ------GKLKEALDFVQSMP----IKSDAGIW-GTLL-CACK---I--HR-----NIEIGEYVAYRLFE-----LEPHSA 562 (615)
Q Consensus 510 ------g~~~~A~~~~~~~~----~~p~~~~~-~~l~-~~~~---~--~~-----~~~~A~~~~~~~~~-----~~p~~~ 562 (615)
.--.+.+++++... ..+....+ ..+- ..|+ . .| -.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 11234555555544 11111111 1111 1111 1 11 23567777777754 456655
Q ss_pred CChHh---H-HHHHHccCChHHHHHHHHHHHhcCc
Q 036661 563 APYVE---M-ANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 563 ~~~~~---l-~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.-+-. . +-.|...|+.++|.++-++..+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 32222 1 2345668888888888887766554
No 402
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.77 E-value=85 Score=27.75 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=32.4
Q ss_pred HHHHHHHHhhccCchH-------HHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 462 TFLAVLQACTHAGFLE-------KGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
.+..+...|...|+.+ .|.+.|.+.......+.. ..+.-.++.+..+.|+.++|.+.|.++.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555566676666633 344444444432122111 1223345566666777777777776665
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.53 E-value=25 Score=30.42 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=13.8
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036661 493 NPELNHYSCMADLLGRKGKLKEALDFVQSM 522 (615)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (615)
.|+..++..++.++...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 404
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=66.25 E-value=60 Score=25.21 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCChHHHHH
Q 036661 498 HYSCMADLLGRKGKLKEALD 517 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~ 517 (615)
++..|..++...|++++++.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHH
Confidence 34445556666666665443
No 405
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.77 E-value=1.5e+02 Score=29.61 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=60.3
Q ss_pred HHhcCChHHHHHHHHHHH---HcCC--CCCH---HHHHHHHHHhhccCchHHHHHHHHHHHH------hhCCCCCh----
Q 036661 435 CALNGEFVEALDLFHQMM---ELDL--RPNR---VTFLAVLQACTHAGFLEKGWGYFNLMTK------VYQVNPEL---- 496 (615)
Q Consensus 435 ~~~~~~~~~a~~~~~~~~---~~~~--~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~---- 496 (615)
+.-.|++.+|.+++...- ..|. .|.. ..++.|.-.+.+.|.+.-+..+|.++.+ ..|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345677777777665432 1221 1211 1234454455566666666666666553 11444432
Q ss_pred ------hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHH
Q 036661 497 ------NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKI 540 (615)
Q Consensus 497 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 540 (615)
......+-.|...|++-.|.+.|.+.. ...++..|..+..+|..
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 122234556677788888888887775 56667788888877754
No 406
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=65.74 E-value=22 Score=27.48 Aligned_cols=62 Identities=18% Similarity=-0.064 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHhCChhHHHHHHHHHh-------ccCCCCCC----ChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 528 AGIWGTLLCACKIHRNIEIGEYVAYRLF-------ELEPHSAA----PYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
..++..|..++...|++++++...++++ +++.+... +.++.+.++...|+.++|.+.|+..-
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3456677788889999999888777765 35555433 44566788999999999999998753
No 407
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.48 E-value=68 Score=33.65 Aligned_cols=183 Identities=16% Similarity=0.240 Sum_probs=92.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----------HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchH
Q 036661 326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV----------TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVM 395 (615)
Q Consensus 326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 395 (615)
+-..++-.|....+++..+++.+.+... ||.. .|.-.+.--.+.|+-++|..+.-.+.+..-+..+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3444555666677777777777777653 3221 12222333334566666666655555422222222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHhhc
Q 036661 396 VCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVT---FLAVLQACTH 472 (615)
Q Consensus 396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~ 472 (615)
. ||-+|+ +|+.|- +-..|...+..+.|.+.|++..+. .|+... +..|+.+-.+
T Consensus 280 m-------~Cl~GR------IYKDmF---------~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 280 M-------YCLCGR------IYKDMF---------IASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred e-------eeeech------hhhhhh---------hccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhh
Confidence 2 222332 222111 111233445567777888887763 676543 3333332211
Q ss_pred cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661 473 AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAY 552 (615)
Q Consensus 473 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 552 (615)
.++...++- .+ | ..|...+.+.|..++-.++|+-.- .+.+-.-.+|+.+|.+..+
T Consensus 336 --~Fens~Elq-~I----g--------mkLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 336 --HFENSLELQ-QI----G--------MKLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred --hccchHHHH-HH----H--------HHHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHHH
Confidence 122222211 11 1 124456677777777766665432 3333345678888888888
Q ss_pred HHhccCCC
Q 036661 553 RLFELEPH 560 (615)
Q Consensus 553 ~~~~~~p~ 560 (615)
.++++.|-
T Consensus 391 ~mfKLk~P 398 (1226)
T KOG4279|consen 391 MMFKLKPP 398 (1226)
T ss_pred HHhccCCc
Confidence 88888874
No 408
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.17 E-value=1.5e+02 Score=29.52 Aligned_cols=181 Identities=12% Similarity=-0.002 Sum_probs=98.9
Q ss_pred HhcCChHHHHHHHhcCCC-----CC--h------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHH
Q 036661 405 SKCGSIGDARELFYALPE-----KT--V------VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV--TFLAVLQA 469 (615)
Q Consensus 405 ~~~g~~~~A~~~~~~~~~-----~~--~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~ 469 (615)
.-.|++.+|++-+..|.+ |. . ..-..+..-++..+.++.|..-|....+.--..|.. .-..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 456788877776666554 22 1 111222233456688888888887776642233332 22334557
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCChh-----HHHHHHHHHHhcCChHHHHHHHHhCCCCCCh--------hhHHHHHH
Q 036661 470 CTHAGFLEKGWGYFNLMTKVYQVNPELN-----HYSCMADLLGRKGKLKEALDFVQSMPIKSDA--------GIWGTLLC 536 (615)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~--------~~~~~l~~ 536 (615)
|.+.|+.+.-.++++.+......+.+.. .+...+-.....+++.||..++++.....+. -.+..+..
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 8888887777777776653211111111 1212222234778999999888876511111 12233445
Q ss_pred HHHHhCChhHHHHHHHHHhccC---CCCCCC---hHhHHHHHHccCC--hHHHHHHH
Q 036661 537 ACKIHRNIEIGEYVAYRLFELE---PHSAAP---YVEMANIYALGGR--WDGVANLR 585 (615)
Q Consensus 537 ~~~~~~~~~~A~~~~~~~~~~~---p~~~~~---~~~l~~~~~~~g~--~~~A~~~~ 585 (615)
.+...||..++.+...-+.++. ||-+.. ...+-++|...|+ .+..-+.+
T Consensus 494 v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 5567788888888877766654 443322 2234456667776 44444433
No 409
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=64.71 E-value=11 Score=34.31 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=29.1
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 471 THAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 471 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
.+.|+.++|..+|+.+. .+.|+ +.....++.......++-+|-.++-++.
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 45677777777777766 33443 3444444444444555666666666655
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.70 E-value=47 Score=24.42 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
......++..+...|++++|++.+-++.
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455556666666666655554443
No 411
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.34 E-value=2.3e+02 Score=31.20 Aligned_cols=38 Identities=3% Similarity=-0.110 Sum_probs=25.0
Q ss_pred HHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHH
Q 036661 129 GFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAI 166 (615)
Q Consensus 129 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 166 (615)
.|......+-++..++.+....-.++..-.+.++..|.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 35556677777788888776655556666666666654
No 412
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.00 E-value=16 Score=29.58 Aligned_cols=63 Identities=14% Similarity=-0.012 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCCh
Q 036661 513 KEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRW 578 (615)
Q Consensus 513 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 578 (615)
+.|.++.+-|. ........+......|++.-|.++...++..+|+|..+-...+++|.+.|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 44555555554 2334444556667889999999999999999999999988999888777653
No 413
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=63.95 E-value=13 Score=21.98 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=22.6
Q ss_pred CChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 563 APYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.+|..||.+-...++|++|.+=|++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888888877765
No 414
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.65 E-value=81 Score=28.09 Aligned_cols=19 Identities=11% Similarity=-0.165 Sum_probs=8.5
Q ss_pred HHHHHhCChhHHHHHHHHH
Q 036661 536 CACKIHRNIEIGEYVAYRL 554 (615)
Q Consensus 536 ~~~~~~~~~~~A~~~~~~~ 554 (615)
........+++|+..++++
T Consensus 86 ~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhccccHHHHHHHHH
Confidence 3333444444444444444
No 415
>PRK12798 chemotaxis protein; Reviewed
Probab=63.28 E-value=1.6e+02 Score=28.94 Aligned_cols=188 Identities=11% Similarity=0.019 Sum_probs=121.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccCchH
Q 036661 400 LIDMYSKCGSIGDARELFYALPEKTVVS-WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA-CTHAGFLE 477 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~ 477 (615)
.+-.....|+++-...++..-..++... ...-+.+| -.|+.+++.+.+..+.....++....+..|+.+ .....+..
T Consensus 87 a~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~ 165 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPA 165 (421)
T ss_pred HHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHH
Confidence 3334456778888888777666544321 11122223 468999999999998877667777777777764 45567899
Q ss_pred HHHHHHHHHHHhhCCCCChh----HHHHHHHHHHhcCChHHHHH----HHHhCCCCCChhhH-HHHHHHHHHhCChhHHH
Q 036661 478 KGWGYFNLMTKVYQVNPELN----HYSCMADLLGRKGKLKEALD----FVQSMPIKSDAGIW-GTLLCACKIHRNIEIGE 548 (615)
Q Consensus 478 ~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~----~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~ 548 (615)
.|+++|+... -..|..- ....-+......|+.+++.. ++++....|-...+ ..+..+..+.++-..-.
T Consensus 166 ~Al~~lD~aR---LlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~ 242 (421)
T PRK12798 166 TALKLLDQAR---LLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDA 242 (421)
T ss_pred HHHHHHHHHH---HhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHH
Confidence 9999999987 3355532 33344556678899988654 45555555544433 33444555554333333
Q ss_pred HHHHHHhccCCC-CCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 549 YVAYRLFELEPH-SAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 549 ~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
.+.+-+-.++|+ ....|..++..-.-.|+.+-|.-.-++...-
T Consensus 243 ~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 243 RLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 344444455665 3568888899999999999998888887654
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.27 E-value=41 Score=24.36 Aligned_cols=64 Identities=5% Similarity=0.027 Sum_probs=35.9
Q ss_pred hHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHH
Q 036661 74 QMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKV 139 (615)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 139 (615)
.++++...+.|+ .+......+-.+--..|+.+.|.+++..+. +.+..|..++.++-..|.-+-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 355555555553 222223322222224466777777777777 6666777777777766665444
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.21 E-value=8.3 Score=30.40 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=18.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 036661 30 VDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKA 63 (615)
Q Consensus 30 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 63 (615)
...|.-.+|..+|+.|.+.|.+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 334455566666666666666655 45555544
No 418
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.12 E-value=44 Score=28.26 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=20.1
Q ss_pred HHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 535 LCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 535 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
+..|.+.|.+++|.+++++..+ +|++...-..|..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 3456666666666666666666 55554443333333
No 419
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.88 E-value=12 Score=36.72 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=71.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhc
Q 036661 432 IAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAV-LQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRK 509 (615)
Q Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 509 (615)
+..+...++++.|..++.+.++. .||...|... ..++.+.+++..|+.=+..+.+. .|+ ...|..-+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 44556678999999999999986 7877655443 47888999999998777777642 454 23344444555566
Q ss_pred CChHHHHHHHHhCC-CCCChhhHHHHHHHHH
Q 036661 510 GKLKEALDFVQSMP-IKSDAGIWGTLLCACK 539 (615)
Q Consensus 510 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~ 539 (615)
+++.+|+..|+... ..|+.......+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 77788888887776 6777766666665553
No 420
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=62.32 E-value=1.5e+02 Score=28.57 Aligned_cols=103 Identities=11% Similarity=0.140 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC--------ChhhHHHHHHHHHHhCChhHHHHHHHHHhcc---CCCC----CCC
Q 036661 500 SCMADLLGRKGKLKEALDFVQSMPIKS--------DAGIWGTLLCACKIHRNIEIGEYVAYRLFEL---EPHS----AAP 564 (615)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~p--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~~----~~~ 564 (615)
..|.+.+...|+.++|.+++.+.+.+. .......-++.|...+|+-.|.-+.++.... +|+- ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 346788888999999999998876211 1122344557788889999998888777542 2321 246
Q ss_pred hHhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeEE
Q 036661 565 YVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLV 602 (615)
Q Consensus 565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 602 (615)
|..+..+..+.+.|=++-+.|+.+.+-|-.+...--|+
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~ 252 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWI 252 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhh
Confidence 77888888899999999999999988777665333344
No 421
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.29 E-value=1.6e+02 Score=28.68 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCC------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661 395 MVCNALIDMYSKCGSIGDARELFYALPE------KTVVSWTTMIAGCALNGEFVEALDLFHQMMEL 454 (615)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 454 (615)
..+.-+.+.|..+|+++.|.+.+.+... .-+..|..++..-...|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4677788888999999999999888554 23346666777777778888888877777663
No 422
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=62.06 E-value=1.4e+02 Score=28.11 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc------cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 036661 440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTH------AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLK 513 (615)
Q Consensus 440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (615)
-++++..++.+....+ .|.+......+.++-. .-+|.....+|+.+. .+.|++.+-..-.-+....--.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHH
Confidence 4577788888888877 5888877777665432 336777777887776 34565433222223344444456
Q ss_pred HHHHHHHhCCCCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661 514 EALDFVQSMPIKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 514 ~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 562 (615)
.++...+.....|. ...+..-...+.+.|+.++|...|++++.+.++.+
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 66777776653332 22334455667788999999999999998877643
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.87 E-value=70 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=15.1
Q ss_pred CChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 563 APYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.-|..|+..|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3455555555555555555555555544
No 424
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=61.23 E-value=1.6e+02 Score=28.54 Aligned_cols=25 Identities=8% Similarity=-0.072 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
.+.|.+.|..-+.++.|-.+..+..
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~ 236 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSV 236 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhccc
Confidence 3444455555555555555555544
No 425
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.91 E-value=61 Score=25.42 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 036661 443 EALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKV 489 (615)
Q Consensus 443 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 489 (615)
+..+-+..+..-++-|++......+++|.+.+|+..|.++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566666778888888888888888888888888888888754
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.76 E-value=25 Score=23.61 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 036661 442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 442 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 488 (615)
+...++++.+... +-|-.-...++.++...|++++|.++++.+.+
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334444444332 33333444556666666666666666666654
No 427
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.72 E-value=1.8e+02 Score=28.37 Aligned_cols=89 Identities=11% Similarity=-0.049 Sum_probs=51.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC--ChhhHHHHHHHH-HHhCChhHHHHHHHHHhccCC-----CCCCChHhHHHHH
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IKS--DAGIWGTLLCAC-KIHRNIEIGEYVAYRLFELEP-----HSAAPYVEMANIY 572 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~p--~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~ 572 (615)
.+..+.+.|.+..|+++.+-+. ..| |+......+..| .+.++++--+.+.+....... .-|..-.+.+-++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 4455667777777777776664 233 344444455444 345666666666665443111 1245666677777
Q ss_pred HccCCh---------------HHHHHHHHHHHh
Q 036661 573 ALGGRW---------------DGVANLRTMMKR 590 (615)
Q Consensus 573 ~~~g~~---------------~~A~~~~~~~~~ 590 (615)
...++- ++|.+.+++...
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 777777 777777766543
No 428
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.62 E-value=65 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=26.3
Q ss_pred hcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHH
Q 036661 406 KCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEA 444 (615)
Q Consensus 406 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 444 (615)
..|+.+.|.+++..+. ..+..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777777 6667777777777776665544
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=59.50 E-value=1.7e+02 Score=28.00 Aligned_cols=114 Identities=10% Similarity=-0.018 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh---cCChHHHHHH
Q 036661 442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR---KGKLKEALDF 518 (615)
Q Consensus 442 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 518 (615)
+.-+.+++++++.+ +.+......++..+.+..+.+...+-|+++... .+-+...|...++.... .-.+.+...+
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 44556677776662 234456666677777777777777777777753 22245556555544433 1234444444
Q ss_pred HHhCC-------CC--------CC--hhh---HHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661 519 VQSMP-------IK--------SD--AGI---WGTLLCACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 519 ~~~~~-------~~--------p~--~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
|.+.. .. ++ ... +..+.......|-.+.|..+++.+++++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 44331 11 11 111 2223334467899999999999999976
No 430
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.02 E-value=27 Score=35.70 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=25.3
Q ss_pred HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
+|....+.+.|.++++++-+.+|.++-.-.....+...-|+-++|+..+....
T Consensus 403 CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 403 CYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33444445555555555555555444444444444444445555554444443
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.04 E-value=2.9e+02 Score=30.42 Aligned_cols=183 Identities=17% Similarity=0.129 Sum_probs=88.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 036661 326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 405 (615)
Q Consensus 326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (615)
-|..|+..|...|..++|+++|.+.....-..|.. ..+.-..+.+.+.+.+ .++..+.-.... +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~-~~~~~Li~~y~~-wv 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLG-AENLDLILEYAD-WV 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhc-ccchhHHHHHhh-hh
Confidence 48889999999999999999999887632001110 0111111222222222 222211111111 12
Q ss_pred hcCChHHHHHHHhcCCCCChHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--------Cch
Q 036661 406 KCGSIGDARELFYALPEKTVVSW-TTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA--------GFL 476 (615)
Q Consensus 406 ~~g~~~~A~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~ 476 (615)
-..+.+...++|..-......+. ..-+-.|.....++-+..+++.+....-.++..-.+.++..|... ++-
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg 650 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKG 650 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhcc
Confidence 23445555555554111000000 011223455667777888888887765455555555555555431 122
Q ss_pred HHHHHH--HHHHH----HhhCCCCC--------hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 477 EKGWGY--FNLMT----KVYQVNPE--------LNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 477 ~~a~~~--~~~~~----~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
+++.+. -+++. ......|. ...|....-.+.|.|+.++|+.++-...
T Consensus 651 ~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 651 EEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred ccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 233333 11111 11122222 2344455555668888888888876655
No 432
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.03 E-value=81 Score=23.97 Aligned_cols=78 Identities=10% Similarity=0.007 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661 375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL 454 (615)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 454 (615)
.++|..|.+.+...+. ....+--+-+..+.+.|+++.|...=.....||...|.+|-. .+.|-.+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3455555555544432 222222233344566677777744444444466666655433 3556666666666666555
Q ss_pred C
Q 036661 455 D 455 (615)
Q Consensus 455 ~ 455 (615)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 433
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.83 E-value=2.2e+02 Score=28.56 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccCCc
Q 036661 532 GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPG 598 (615)
Q Consensus 532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 598 (615)
..-+.++..-.+...++.-.+.+.....+++.....-...++..|++.+|.+.+. ..++.+.||
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccC
Confidence 3344556666777888888888877777888888888999999999999988775 455555554
No 434
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.06 E-value=1.5e+02 Score=26.43 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=36.0
Q ss_pred HHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661 415 ELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC 470 (615)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 470 (615)
.+|+-..+|.+.....++..|.. +++++|.+++.++-+.|+.|... .+.+.+++
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 34444555777777777776644 58899999999999988877543 33344443
No 435
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.75 E-value=2.1e+02 Score=28.46 Aligned_cols=79 Identities=19% Similarity=0.058 Sum_probs=35.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChH--HHHHHHHHhhcCC
Q 036661 28 EAVDKNEAHKALLLFRRMKKNDIEPNNLT--FPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIF--VQTTMVDMYAKCD 103 (615)
Q Consensus 28 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 103 (615)
..++.|+.+-+ +.+.+.|..|+... -.+.+..++..|+.+-+ +.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 33445555443 33344566665432 33445555556665433 3333444333321 0112233444556
Q ss_pred ChhHHHHhhcc
Q 036661 104 RLDCAYKLFDK 114 (615)
Q Consensus 104 ~~~~a~~~~~~ 114 (615)
+.+.+..+++.
T Consensus 80 ~~~~v~~Ll~~ 90 (413)
T PHA02875 80 DVKAVEELLDL 90 (413)
T ss_pred CHHHHHHHHHc
Confidence 66665555554
No 436
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.30 E-value=13 Score=34.72 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=43.6
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh-hHHHHHHHHHHhCChhHHHH
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHRNIEIGEY 549 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~~A~~ 549 (615)
..|.++.|++.|...+. .-++....|..-..++.+.++...|++=+.... ..||.. .|..-..+.+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34556666666665552 112223344444555556666666655555544 444332 33333344445566666666
Q ss_pred HHHHHhccC
Q 036661 550 VAYRLFELE 558 (615)
Q Consensus 550 ~~~~~~~~~ 558 (615)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 666665554
No 437
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.12 E-value=46 Score=30.23 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=11.3
Q ss_pred HHHHhhccCchHHHHHHHHHHH
Q 036661 466 VLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 466 l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
+..-|...|++++|.++|+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555555555553
No 438
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.93 E-value=45 Score=28.89 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=32.1
Q ss_pred CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661 524 IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 524 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 559 (615)
..|++..+..++.++...|+.++|.+..+++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 678888888889999999999999999999998888
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.89 E-value=77 Score=26.88 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=10.1
Q ss_pred HHHhcCChHHHHHHHHhCC
Q 036661 505 LLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~ 523 (615)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 4445555555555555544
No 440
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=53.72 E-value=2.5e+02 Score=28.72 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC
Q 036661 398 NALIDMYSKCGSIGDARELFYALPE 422 (615)
Q Consensus 398 ~~l~~~~~~~g~~~~A~~~~~~~~~ 422 (615)
..++.-|.+.+++++|..++..|.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 4566678888888888888887764
No 441
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.33 E-value=1.9e+02 Score=26.80 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
+++.....|...|.+.+|.++-++....+ +.+...+..++..+...|+--.+.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445566677777777777777777653 4455666677777777777666666555543
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.32 E-value=78 Score=31.05 Aligned_cols=55 Identities=9% Similarity=0.061 Sum_probs=37.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCC----------CChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661 501 CMADLLGRKGKLKEALDFVQSMPIK----------SDAGIWGTLLCACKIHRNIEIGEYVAYRLF 555 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~~~----------p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 555 (615)
.|++.++-.|++..|+++++.+... ....++..++.+|...+++.+|.+.|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888776411 123455666677777777777777777765
No 443
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.96 E-value=55 Score=20.53 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=19.2
Q ss_pred HhcCChHHHHHHHHHhHHcCCcCChhHHHHHHH
Q 036661 131 AQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQ 163 (615)
Q Consensus 131 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 163 (615)
.+.|-..++..+++.|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355566666666666666665555555554443
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.62 E-value=45 Score=30.32 Aligned_cols=55 Identities=18% Similarity=0.064 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--------CCCChhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSMP--------IKSDAGIWGTLLCACKIHRNIEIGEYVAYR 553 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 553 (615)
...++..|.+.|++++|.++|+.+. ..+...+...+..++...|+.+..+.+.=+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3457788888888888888888874 112233444455555666666666555433
No 445
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=52.10 E-value=1.3e+02 Score=28.03 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=39.9
Q ss_pred CCCCh-hhHHHHHHHHHHhCChhHHHHHHHHHhccCCC-CCCChHhH-HHH--HHccCChHHHHHHHHHHHh
Q 036661 524 IKSDA-GIWGTLLCACKIHRNIEIGEYVAYRLFELEPH-SAAPYVEM-ANI--YALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 524 ~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l-~~~--~~~~g~~~~A~~~~~~~~~ 590 (615)
+.|+. .+...+.......|++..|-.++-....+-++ ++.....+ |.. -.-..+|+.|.+-+.++++
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45543 34455555566789999888776555443332 23233332 222 2235789999999999876
No 446
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=52.00 E-value=46 Score=25.50 Aligned_cols=27 Identities=7% Similarity=-0.092 Sum_probs=18.4
Q ss_pred HHhhccCchHHHHHHHHHHHHhhCCCC
Q 036661 468 QACTHAGFLEKGWGYFNLMTKVYQVNP 494 (615)
Q Consensus 468 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 494 (615)
..+...|+.-+|+++.+++...++-..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 456667788888888888776554433
No 447
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.01 E-value=96 Score=32.50 Aligned_cols=60 Identities=5% Similarity=-0.057 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHh
Q 036661 154 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRG 215 (615)
Q Consensus 154 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 215 (615)
+.....-++..|.+.|-.+.+.++.+.+-..-.. ..-|..-+..+.+.|+......+-..
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344445555555555555555554443332111 12344444455555555544444333
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.11 E-value=3.8e+02 Score=29.31 Aligned_cols=24 Identities=8% Similarity=-0.266 Sum_probs=14.3
Q ss_pred HHHHhhcccchhhHHHHHHHHHHh
Q 036661 364 SMISGCGQSGALELGKWFDNYACS 387 (615)
Q Consensus 364 ~ll~~~~~~~~~~~a~~~~~~~~~ 387 (615)
.++......|+.+.|...++++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445555566666666666665554
No 449
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.67 E-value=1e+02 Score=22.72 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=26.7
Q ss_pred HhcCChHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 036661 436 ALNGEFVEALDLFHQMME----LDLRPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 436 ~~~~~~~~a~~~~~~~~~----~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 488 (615)
.+.|++..|.+.+.+..+ .+..+. ......+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777555554433 221110 11222334445566677777766666654
No 450
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.23 E-value=1.3e+02 Score=23.80 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=20.0
Q ss_pred HHHHHHHHHhc--cCCCCCCChHhHHHHHHccCChHHHHHHHH
Q 036661 546 IGEYVAYRLFE--LEPHSAAPYVEMANIYALGGRWDGVANLRT 586 (615)
Q Consensus 546 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 586 (615)
.+..+|+.+.. +.-..+..|...+..+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443 223334455555555555555555555554
No 451
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.83 E-value=1.2e+02 Score=23.28 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=29.9
Q ss_pred CHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661 308 DIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA 352 (615)
Q Consensus 308 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 352 (615)
+++++++.+.+ ..-|..++..|...|.+++|++++.++..
T Consensus 28 ~~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455554432 23588899999999999999999998877
No 452
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.58 E-value=1.9e+02 Score=28.11 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHhCChhHHHHHHHHHhccCC--C--CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEP--H--SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
....+.++..|...+.++.|..+..+..-.+. + -+...+.+|.+-.-+++|..|.+.+-....+.+
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 44667788888889999999998888763222 1 234566788999999999999999977765443
No 453
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.88 E-value=63 Score=25.35 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=21.7
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcc
Q 036661 178 HSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIE 217 (615)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 217 (615)
+..+....+.|++.+-...++++.+.+|+..|.++|+.++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333344455555555555555555666666666665555
No 454
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.33 E-value=1.8e+02 Score=30.39 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=14.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHh
Q 036661 160 GLTQAAIHAKHLSLLKSVHSFGIHI 184 (615)
Q Consensus 160 ~ll~~~~~~~~~~~a~~~~~~~~~~ 184 (615)
+++.+|...|++-.+.++++....+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~ 57 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDH 57 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC
Confidence 5556666666666666665555543
No 455
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=47.20 E-value=99 Score=27.57 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=17.9
Q ss_pred HhCChhHHHHHHHHHhccCCC
Q 036661 540 IHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~ 560 (615)
..++...|..+++++++++|+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC
Confidence 345778999999999999997
No 456
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.03 E-value=24 Score=23.71 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
++...++++.++.. .-|....-.++.+|...|++++|.++++++.
T Consensus 6 ~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445444421 2344445567788888888888888877653
No 457
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.74 E-value=72 Score=20.02 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=23.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661 436 ALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ 468 (615)
Q Consensus 436 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 468 (615)
.+.|-..++...+++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456667777777888877777777776666554
No 458
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.70 E-value=41 Score=35.92 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=43.0
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhH
Q 036661 467 LQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 546 (615)
+..+.+.|-.+-|+.+.+.-..++ .+....|+.+.|++..+++. +...|..|+.....+|+.+-
T Consensus 627 IaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 627 IAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHH
Confidence 334455566666655554433222 23345667777766666654 55567777776667777777
Q ss_pred HHHHHHHHhc
Q 036661 547 GEYVAYRLFE 556 (615)
Q Consensus 547 A~~~~~~~~~ 556 (615)
|+-.|++...
T Consensus 691 aEm~yQ~~kn 700 (1202)
T KOG0292|consen 691 AEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHhhh
Confidence 7666666543
No 459
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.66 E-value=1.5e+02 Score=23.56 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHH
Q 036661 443 EALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNL 485 (615)
Q Consensus 443 ~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 485 (615)
.+.++|+.|...|+--.. ..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 556666666665544332 3445555555566666666666553
No 460
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=46.05 E-value=37 Score=19.17 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661 543 NIEIGEYVAYRLFELEPHSAAPYVEMA 569 (615)
Q Consensus 543 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 569 (615)
.++.|..+|++.+...|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 356666777777666665 55554443
No 461
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=46.04 E-value=2.8e+02 Score=27.07 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHhhc--cCchHHHHHHHHH
Q 036661 431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVT----FLAVLQACTH--AGFLEKGWGYFNL 485 (615)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~l~~~~~~--~~~~~~a~~~~~~ 485 (615)
.+..+.+.+++..|.++|+++.....+|+... +..+..+|.. .-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456678888999999998888755554433 3344445443 3356677777764
No 462
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.81 E-value=1.1e+02 Score=25.04 Aligned_cols=64 Identities=5% Similarity=-0.019 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCC
Q 036661 40 LLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDR 104 (615)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 104 (615)
++.+.+++.|.++.+ .-..++..+...++.-.|..+++.+.+.+.+.+..|.-.-+..+...|-
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 455666777776443 3567778888777778899999999888766666655555677776664
No 463
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.29 E-value=3.2e+02 Score=27.12 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=20.9
Q ss_pred HHHhhcCCChhHHHHhhccCCCCCch--hHHHHHHHHHhcCChHHHHHHH
Q 036661 96 VDMYAKCDRLDCAYKLFDKMPDRDVA--SWNAMIVGFAQMGFLEKVLCLF 143 (615)
Q Consensus 96 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~ 143 (615)
+...+..|+.+-+.-+++.-..++.. .....+...+..|+.+.+..++
T Consensus 39 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 39 IKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 34444556666555555443322211 1112233444556655544433
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.11 E-value=47 Score=30.70 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=31.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036661 326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSM 365 (615)
Q Consensus 326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 365 (615)
-|+..|..-.+.||+++|++++++..+.|..--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4778889999999999999999999998876555555443
No 465
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.10 E-value=2.5e+02 Score=25.80 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=62.4
Q ss_pred HHHhcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHhhcccchhh-HHHHHHHHHHh---c--CCCCchHHHHHHHH
Q 036661 333 GYAQKGDLDEALRL----FFAMEAAGEVPDLVTVLSMISGCGQSGALE-LGKWFDNYACS---G--GLKDNVMVCNALID 402 (615)
Q Consensus 333 ~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~---~--~~~~~~~~~~~l~~ 402 (615)
.+.+.|+...|.++ ++-..+.+.+++......++..+...+.-+ .-..+.+.+++ . ...-++.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 34445554433332 233333455566655555544443332111 12223333332 1 12345677788888
Q ss_pred HHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661 403 MYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGY 482 (615)
Q Consensus 403 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 482 (615)
.|.+.|++.+|+..|-.-..++...+..++.-....+...++ +...-. .+--|.-.++...|...
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQYLCLGNLRDANEL 163 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHHHHTTBHHHHHHH
T ss_pred HHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHHHHhcCHHHHHHH
Confidence 899999998888777544333333322222222222222221 111112 22235556778888887
Q ss_pred HHHHHHh
Q 036661 483 FNLMTKV 489 (615)
Q Consensus 483 ~~~~~~~ 489 (615)
++...+.
T Consensus 164 ~~~f~~~ 170 (260)
T PF04190_consen 164 FDTFTSK 170 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 466
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.71 E-value=2.9e+02 Score=26.39 Aligned_cols=120 Identities=6% Similarity=-0.056 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHH---hCChhHHHHH
Q 036661 476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKI---HRNIEIGEYV 550 (615)
Q Consensus 476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~---~~~~~~A~~~ 550 (615)
.+.-+.+++++.+. .+.+...+..++..+.+..+.++..+.++++. ..| +...|..++..... .-.++....+
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 35567788888864 23445667778888888888888888899887 334 57788888877655 2367788888
Q ss_pred HHHHhccCCC-----------C-------CCChHhHHHHHHccCChHHHHHHHHHHHhcCcccCC
Q 036661 551 AYRLFELEPH-----------S-------AAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFP 597 (615)
Q Consensus 551 ~~~~~~~~p~-----------~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 597 (615)
|.+.++.-.. . ..++..+...+...|-.+.|..+++-+.+-+....+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 8877652211 0 123444566678899999999999999997764433
No 467
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=44.57 E-value=1.4e+02 Score=23.54 Aligned_cols=60 Identities=15% Similarity=0.017 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChh-hHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAG-IWGTLLCACKIHRNIEIGEYVAYRLF 555 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~ 555 (615)
..+..+++.++.=.|..++|.++++.....+... .-..++..|....+-++..++-++.+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3456677888888888888888888887554443 33557778877777777666655543
No 468
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.34 E-value=45 Score=30.85 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHH
Q 036661 122 SWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTV 158 (615)
Q Consensus 122 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 158 (615)
-||.-|....+.||+++|++++++.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4678888888888888888888888888865444444
No 469
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.02 E-value=2.4e+02 Score=25.25 Aligned_cols=166 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHH---HHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 036661 410 IGDARELFYALPEKTVVSWTTMIAGCALNGEFVEAL---DLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLM 486 (615)
Q Consensus 410 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 486 (615)
.....++++.+..++.......--.|.-.-|.+... ..-+-....+++++...+..-...+-+ +++++|.+.+
T Consensus 26 ~~~L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~-~~~~~A~~~L--- 101 (226)
T PF13934_consen 26 DNDLRALLDLILSSNVSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYIKFIQGFWLLDH-GDFEEALELL--- 101 (226)
T ss_pred HHHHHHHHHHHhcCCcCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHHHHHHHHHHhCh-HhHHHHHHHh---
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661 487 TKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV 566 (615)
Q Consensus 487 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 566 (615)
............++.++.+.|+.+.|+.+++.........--..+.......+.+.+|..+.+...+ +.....+.
T Consensus 102 ---~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~~--~~~~~l~e 176 (226)
T PF13934_consen 102 ---SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANGLVTEAFSFQRSYPD--ELRRRLFE 176 (226)
T ss_pred ---CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCch--hhhHHHHH
Q ss_pred hHHHHHH----ccCChHHHHHH
Q 036661 567 EMANIYA----LGGRWDGVANL 584 (615)
Q Consensus 567 ~l~~~~~----~~g~~~~A~~~ 584 (615)
.+...+. +.|+.++-..+
T Consensus 177 ~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 177 QLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHhhhhhHHHHHHhC
No 470
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.00 E-value=2.3e+02 Score=25.13 Aligned_cols=94 Identities=19% Similarity=0.315 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRP---NRVTF--LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSC 501 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 501 (615)
-.|.|+--|.-...+.+|...|.. +.|+.| +..++ ..-++.....|++++|.+....+... -+..+...+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 344555555555455555444433 233444 22222 22344556677777777766666532 22233222222
Q ss_pred HHH----HHHhcCChHHHHHHHHhCC
Q 036661 502 MAD----LLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 502 l~~----~~~~~g~~~~A~~~~~~~~ 523 (615)
|.. -+.|.|..++|+++.+.-.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 111 1346666666666666544
No 471
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.29 E-value=1.5e+02 Score=22.17 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHH
Q 036661 475 FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLL 535 (615)
Q Consensus 475 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 535 (615)
+.....+.++++... +....+.....|.-.|.+.|+.+.|.+-|+.-. .-|....+...+
T Consensus 52 Q~~~le~~~ek~~ak-~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 52 QTAALEKYLEKIGAK-NGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHHHhhc-CCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
No 472
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.06 E-value=2.3e+02 Score=26.48 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhc----------CCHHHH
Q 036661 243 LNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKC----------GDIDSA 312 (615)
Q Consensus 243 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a 312 (615)
.++++.|...++.|.-..|..+.-.+.+.=.+..+..+|+.+...... +..|+..|+.. |++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhcCC
Q 036661 313 RFLFDGMCDRTRVSWTAMISGYAQKGD 339 (615)
Q Consensus 313 ~~~~~~~~~~~~~~~~~ll~~~~~~~~ 339 (615)
.++++.-+..|....-.+...+.....
T Consensus 338 mkLLQ~yp~tdi~~~l~~A~~Lr~~k~ 364 (370)
T KOG4567|consen 338 MKLLQNYPTTDISKMLAVADSLRDKKH 364 (370)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhccc
No 473
>PF15469 Sec5: Exocyst complex component Sec5
Probab=40.61 E-value=1.1e+02 Score=26.16 Aligned_cols=119 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--hhhHHHHH
Q 036661 460 RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSD--AGIWGTLL 535 (615)
Q Consensus 460 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~ 535 (615)
...+..++..-.+......++.++++..--+.+| .-+.-+.+.|+++.+...|.++. .... ......-+
T Consensus 57 ~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP-------~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v 129 (182)
T PF15469_consen 57 NSVFKPLLERREKADKLRNALEFLQRNRFLFNLP-------SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV 129 (182)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q ss_pred HHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeEE
Q 036661 536 CACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLV 602 (615)
Q Consensus 536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 602 (615)
..-...---+--..+++++.+.. ...++..+++..+.+-++..+|.+-|+
T Consensus 130 ~~eve~ii~~~r~~l~~~L~~~~-----------------~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 130 WSEVEKIIEEFREKLWEKLLSPP-----------------SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-----------------CCHHHHHHHHHHHHhCCCCCCHHHHHH
No 474
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.39 E-value=2.3e+02 Score=27.84 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=40.4
Q ss_pred HHhhccCchHHHHHHHHHHHHhhCCCCChh--HHHHHHHHHH--hcCChHHHHHHHHhCC
Q 036661 468 QACTHAGFLEKGWGYFNLMTKVYQVNPELN--HYSCMADLLG--RKGKLKEALDFVQSMP 523 (615)
Q Consensus 468 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~ 523 (615)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456789999999999999864 555544 4555666554 5678899999999876
No 475
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=39.97 E-value=1.5e+02 Score=29.74 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQS 521 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (615)
..|-..+.-|..++++++|.++.+-.. ...+|.+++..-.+..+..-+...+..
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv~-------eqTMWAtlAa~Av~~~~m~~~EiAYaA 627 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFVQ-------EQTMWATLAAVAVRKHQMQISEIAYAA 627 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhcc-------chHHHHHHHHHHHhhccccHHHHHHHH
Confidence 345555666666677777766654433 223455555555555555444444433
No 476
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.50 E-value=1.7e+02 Score=22.33 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=49.7
Q ss_pred CCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 036661 68 SDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMR 147 (615)
Q Consensus 68 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 147 (615)
...++|..+.+.+...+. -...+.-..+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456778888887777653 222233334555778899999966666666788888766544 46788888888887776
Q ss_pred HcC
Q 036661 148 LVG 150 (615)
Q Consensus 148 ~~~ 150 (615)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 655
No 477
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.38 E-value=5e+02 Score=27.62 Aligned_cols=180 Identities=11% Similarity=0.041 Sum_probs=86.2
Q ss_pred HHHHHHHHHHh-CCCCCC--cccHHHHHHHHH-hcCCchhHhHHHHHHhhcCCCCChH-----HHHHHHHHhhcCCChhH
Q 036661 37 KALLLFRRMKK-NDIEPN--NLTFPFIAKACA-KLSDFLYSQMIHGHIVKSPFWSDIF-----VQTTMVDMYAKCDRLDC 107 (615)
Q Consensus 37 ~a~~~~~~~~~-~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 107 (615)
.|++.++.+.+ ..++|. ..++..+...+. ...+++.|+..+++....--.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45566666663 223332 224445555544 5577788887777665433222221 2234455555554443
Q ss_pred HHHhhccCCCC----Cc----hhHHHH-HHHHHhcCChHHHHHHHHHhHHcC---CcCChhHHHHHHHHHH--hcCChhH
Q 036661 108 AYKLFDKMPDR----DV----ASWNAM-IVGFAQMGFLEKVLCLFYNMRLVG---IQADFVTVMGLTQAAI--HAKHLSL 173 (615)
Q Consensus 108 a~~~~~~~~~~----~~----~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~ 173 (615)
|...+++..+. .. ..+..+ +..+...+++..|++.++.+.... ..|-...+..++.+.. ..+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 66666554321 11 122222 222223367777777777665432 2333444455555544 3344455
Q ss_pred HHHHHHHHHHhcC---------CCccchHHHHHHHHH--ccCCHHHHHHHHHhcc
Q 036661 174 LKSVHSFGIHIGV---------DADVSVCNTWISAYA--KCNDLKMAELVFRGIE 217 (615)
Q Consensus 174 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~ 217 (615)
+.+.+..+..... .|...++..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555533221 223445555555443 3566556655555443
No 478
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.32 E-value=3.3e+02 Score=29.71 Aligned_cols=52 Identities=8% Similarity=0.039 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSM 522 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (615)
.+|..|......+|+.+-|+..|++... |..|..+|.-.|+.++-.++.+.+
T Consensus 673 d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 673 DVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHH
Confidence 4555555555555555555555555441 233444445555555444444333
No 479
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.47 E-value=38 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=24.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 036661 334 YAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISG 368 (615)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 368 (615)
....|.-.+|..+|++|++.|-+||. ++.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34456677899999999999999985 4445543
No 480
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=38.38 E-value=77 Score=21.94 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=11.9
Q ss_pred CChHHHHHHHHHHHhcCc
Q 036661 576 GRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 576 g~~~~A~~~~~~~~~~~~ 593 (615)
|....|.+.|+++...+-
T Consensus 59 G~L~~aL~ey~~~~g~~~ 76 (82)
T PF11123_consen 59 GELAAALEEYKKMVGADG 76 (82)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 456677777877766544
No 481
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.71 E-value=5.1e+02 Score=27.25 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=6.8
Q ss_pred CCChhhHHHHHHHH
Q 036661 236 GDKFDDSLNFYRHM 249 (615)
Q Consensus 236 ~~~~~~a~~~~~~m 249 (615)
.|++..+++....+
T Consensus 310 ~~d~~~vL~~~~~~ 323 (566)
T PF07575_consen 310 EGDIESVLKEISSL 323 (566)
T ss_dssp TS--GGGHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 55666666655544
No 482
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.16 E-value=3.5e+02 Score=25.18 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHH-CCCCCCHHhHHHHHHhccC-ch-hhhhhhHHHHHHHH-hcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036661 239 FDDSLNFYRHMIY-DGFRPDVTTVVSLLSSCVC-PE-ALVQGRLVHSHGIH-YGFDLDVSVINTLISMYSKCGDIDSARF 314 (615)
Q Consensus 239 ~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 314 (615)
+.+|+++|+.... ..+--|......+++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555553221 2244455555555555443 11 11122223333332 2335666677778888888888888888
Q ss_pred HHhccC-----CCCcccHHHHHHHHHhcCChhHHHHHH
Q 036661 315 LFDGMC-----DRTRVSWTAMISGYAQKGDLDEALRLF 347 (615)
Q Consensus 315 ~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~ 347 (615)
+++... ..|...|...|+.-...|+..-...+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 777652 236677888888888888766444443
No 483
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=37.13 E-value=3.3e+02 Score=24.95 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=30.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKAC 64 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 64 (615)
-.+.+++.+.+.+....|+.+.+.+.. .+.-...+..++...
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~--l~~F~~~LE~LLh~v 125 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRS--LPYFSHALELLLHTV 125 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhcc--CCCcHHHHHHHHHHH
Confidence 477889999999999999999988865 332344555555543
No 484
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.52 E-value=7e+02 Score=28.50 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=10.5
Q ss_pred HHhcCChHHHHHHHhcCC
Q 036661 404 YSKCGSIGDARELFYALP 421 (615)
Q Consensus 404 ~~~~g~~~~A~~~~~~~~ 421 (615)
|...|...+|...|.+..
T Consensus 930 yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eecCCchHHHHHHHHHHh
Confidence 455566666666665543
No 485
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=36.50 E-value=2.4e+02 Score=23.08 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---------CChHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPE---------KTVVSWTTMIAGCALNGE-FVEALDLFHQMMELDLRPNRVTFLAV 466 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l 466 (615)
.++++.-....+++.....+++.+.. .+...|..++.+..+..- --.+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555555555555555555554422 233456666666644433 33445566666666666777777777
Q ss_pred HHHhhcc
Q 036661 467 LQACTHA 473 (615)
Q Consensus 467 ~~~~~~~ 473 (615)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7666554
No 486
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.46 E-value=6.1e+02 Score=27.81 Aligned_cols=130 Identities=8% Similarity=-0.044 Sum_probs=66.6
Q ss_pred ccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 036661 268 CVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLF 347 (615)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 347 (615)
+...|+.+....+-..+.+ |..++..+...+.+++|.+++..-..+... -...-. .....+......|
T Consensus 514 ~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~--yk~ap~-Li~~~p~~tV~~w 581 (911)
T KOG2034|consen 514 LASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELF--YKYAPE-LITHSPKETVSAW 581 (911)
T ss_pred HHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhH--HHhhhH-HHhcCcHHHHHHH
Confidence 3444555555444443332 667888889999999999988776333221 111101 1122233333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHhhccc---chhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 036661 348 FAMEAAGEVPDLVTVLSMISGCGQS---GALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGD 412 (615)
Q Consensus 348 ~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (615)
..+.+ .....-...++..+.+. .....+..+++.....-..-++..+|.++..|++..+-+.
T Consensus 582 m~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~l 646 (911)
T KOG2034|consen 582 MAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDL 646 (911)
T ss_pred HHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccch
Confidence 32222 22233333444444444 2344555555555444445677788888888876654333
No 487
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.43 E-value=67 Score=24.85 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=30.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCch
Q 036661 24 SQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFL 71 (615)
Q Consensus 24 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 71 (615)
.+++.+...+..-.|-++++.+.+.++.++..|-...|..+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355666666666777777777777666666666666666666655443
No 488
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.34 E-value=3.5e+02 Score=25.00 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=21.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCcCChhH
Q 036661 126 MIVGFAQMGFLEKVLCLFYNMRLVGIQADFVT 157 (615)
Q Consensus 126 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 157 (615)
+.+-..+.+++++|+..+.+....|+..|..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 34445566778888888888877776665544
No 489
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.02 E-value=4.3e+02 Score=25.93 Aligned_cols=160 Identities=12% Similarity=0.038 Sum_probs=86.7
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhc--CCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-C------------C
Q 036661 360 VTVLSMISGCGQSGALELGKWFDNYACSG--GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-K------------T 424 (615)
Q Consensus 360 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~------------~ 424 (615)
..+.-+...|...|+++.|.+.+.+.+.. ..+..+..+..++..-.-.|+|........+... | -
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 35666778889999999999999986652 2233455566667667777888877776665544 1 1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhH
Q 036661 425 VVSWTTMIAGCALNGEFVEALDLFHQMMELD------LRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNH 498 (615)
Q Consensus 425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 498 (615)
...+..+... ..+++..|.+.|-...... +.|...+....+.+.+--++-+--+.+.....=..-....+..
T Consensus 231 l~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 1222233222 3346666665554433211 3344444444444444444333333333322111111223333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
+..+...| .+++...+++++++.
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIK 331 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhc
Confidence 44444444 367888888888876
No 490
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=35.63 E-value=81 Score=19.15 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=27.3
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHccCChHHHH
Q 036661 550 VAYRLFELEPHSAAPYVEMANIYALGGRWDGVA 582 (615)
Q Consensus 550 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 582 (615)
.+..++-.+|++...+..+++.+...|+...|.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 456677788999999999999999999986553
No 491
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=35.52 E-value=1.1e+02 Score=28.40 Aligned_cols=69 Identities=9% Similarity=-0.035 Sum_probs=57.1
Q ss_pred CCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh-HHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 525 KSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE-MANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 525 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
..|+..|...+.-..+.|-+.+...++-++++..|.|...|.. ...-|...++.+.++.++.+-..-+.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 4466777777777677889999999999999999999999987 55678889999999999987666554
No 492
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.44 E-value=1.7e+02 Score=30.38 Aligned_cols=46 Identities=11% Similarity=-0.109 Sum_probs=26.3
Q ss_pred HhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661 540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTM 587 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 587 (615)
..+..|+|-..|+.++..+|+ ..++..+.-+.+.|-..+|..++++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 54 DVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 345555566666666665555 4555555555566655555555553
No 493
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.91 E-value=95 Score=21.12 Aligned_cols=48 Identities=8% Similarity=0.047 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 036661 424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH 472 (615)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 472 (615)
....++.++..++...-.++++..+.++...| ..+..+|.--++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33445556666666556666666666666665 3444555544444443
No 494
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.84 E-value=4.7e+02 Score=26.06 Aligned_cols=170 Identities=11% Similarity=-0.003 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhC---CC-CCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHH
Q 036661 34 EAHKALLLFRRMKKN---DI-EPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAY 109 (615)
Q Consensus 34 ~~~~a~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 109 (615)
..++...+++..... |+ ..+......++..+ .|+...+..+++.+...+...+......++.......+
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d----- 224 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYD----- 224 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccC-----
Q ss_pred HhhccCCCCCchhHHHHHHHHHhc---CChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcC-----ChhHHHHHHHHH
Q 036661 110 KLFDKMPDRDVASWNAMIVGFAQM---GFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAK-----HLSLLKSVHSFG 181 (615)
Q Consensus 110 ~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~ 181 (615)
++...+..++.++.+. .+++.|+.++..|.+.|..|....-..+..++-..| ....+...++..
T Consensus 225 --------~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 225 --------KDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred --------CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred HHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhccc
Q 036661 182 IHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEE 218 (615)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 218 (615)
...|.+.........+-.++.+-+-..+...+....+
T Consensus 297 ~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 297 ERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=34.13 E-value=3.2e+02 Score=26.94 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=51.9
Q ss_pred HCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHH--------HHhcCChHHHHHHHhcCCC-
Q 036661 352 AAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM--------YSKCGSIGDARELFYALPE- 422 (615)
Q Consensus 352 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~- 422 (615)
...+.||..+.+.+...++..-..+....+|+...+.+ .|-...+-+|+-. -.+...-+++.++++.|+.
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34577888887777777766667777777777777766 3333333333211 1244456788888888875
Q ss_pred ---CChHHHHHHHHHHH
Q 036661 423 ---KTVVSWTTMIAGCA 436 (615)
Q Consensus 423 ---~~~~~~~~l~~~~~ 436 (615)
.|+.-+..|...|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 35555666665554
No 496
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.08 E-value=7.4e+02 Score=28.05 Aligned_cols=20 Identities=20% Similarity=-0.037 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHhc
Q 036661 299 LISMYSKCGDIDSARFLFDG 318 (615)
Q Consensus 299 l~~~~~~~~~~~~a~~~~~~ 318 (615)
.+.-+...+++.+|..+.++
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 44455666777777776655
No 497
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.92 E-value=1.5e+02 Score=25.09 Aligned_cols=59 Identities=2% Similarity=-0.180 Sum_probs=27.6
Q ss_pred HHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCH
Q 036661 147 RLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDL 206 (615)
Q Consensus 147 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (615)
+..|++++..-. .++..+...++.-.|.++++.+.+.+...+..|--..++.+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 334444444333 23333333344455566666665555554544444444555555443
No 498
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.91 E-value=4.2e+02 Score=25.12 Aligned_cols=55 Identities=15% Similarity=-0.066 Sum_probs=21.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
+.....+.|+.++-..+++.....++......++.+.....+.+...++++.++.
T Consensus 175 v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 175 VYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3334444444333333333333333333444444444444455555555555554
No 499
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=33.83 E-value=4.9e+02 Score=25.92 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHH
Q 036661 357 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCA 436 (615)
Q Consensus 357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 436 (615)
++...-..+..++...+.......+...+ + .+++......+.++...+. +-...+..-+..++......-+.++.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L-~---~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLL-A---ASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHh-c---CCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34444555566665555544444333333 2 2223333333444443321 11112222223445555555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL 516 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 516 (615)
..++. .+...+..+.. .+|...-..-+.+....|. ..|...+..... .++......+...+... ...++.
T Consensus 173 ~l~~~-~a~~~L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~----~~g~~~~~~l~~~lal~-~~~~a~ 242 (410)
T TIGR02270 173 ELPRR-LSESTLRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV----LEGGPHRQRLLVLLAVA-GGPDAQ 242 (410)
T ss_pred hhccc-cchHHHHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh----ccCccHHHHHHHHHHhC-CchhHH
Confidence 55543 23333333322 3444444444555555555 455444444222 12222222233333222 223555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHhCChh
Q 036661 517 DFVQSMPIKSDAGIWGTLLCACKIHRNIE 545 (615)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 545 (615)
+.+......+. +-...+.++.+.|+..
T Consensus 243 ~~L~~ll~d~~--vr~~a~~AlG~lg~p~ 269 (410)
T TIGR02270 243 AWLRELLQAAA--TRREALRAVGLVGDVE 269 (410)
T ss_pred HHHHHHhcChh--hHHHHHHHHHHcCCcc
Confidence 55555543333 3444455555555554
No 500
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.48 E-value=95 Score=30.73 Aligned_cols=142 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHh-hcCCChhHHHHh
Q 036661 33 NEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMY-AKCDRLDCAYKL 111 (615)
Q Consensus 33 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~ 111 (615)
+..++-+++++.+.+.| ........+.+|.+.++++.|...+++-++.| ..++++| .-..-++...++
T Consensus 68 ~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~--------~s~LNGfP~VnhGv~~~R~l 136 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAG--------RSLLNGFPGVNHGVKGCRKV 136 (480)
T ss_pred CcHHHHHHHHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhhcC--------cccccCCCcccccHHHHHHH
Q ss_pred hccCCCC-----CchhHHHHHHHHHhcC--------------------------ChHHHHHHHHHhHHcCCcCChhHHHH
Q 036661 112 FDKMPDR-----DVASWNAMIVGFAQMG--------------------------FLEKVLCLFYNMRLVGIQADFVTVMG 160 (615)
Q Consensus 112 ~~~~~~~-----~~~~~~~li~~~~~~g--------------------------~~~~a~~~~~~m~~~~~~p~~~~~~~ 160 (615)
++.+..| ....-..|.......| +|..+-++.-...+.|+..|..+|..
T Consensus 137 ~~~v~~PvQvRHGtpDarlL~e~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGp 216 (480)
T TIGR01503 137 LEAVNLPLQIRHGTPDARLLAEIILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGP 216 (480)
T ss_pred HHhCCCCeeccCCCCcHHHHHHHHHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccC
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCC
Q 036661 161 LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCND 205 (615)
Q Consensus 161 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (615)
|...+ ++|....-..+++++....+
T Consensus 217 LtgtL--------------------vPPsisiav~ilE~Lla~eq 241 (480)
T TIGR01503 217 LTGTL--------------------VPPSISNAIGIIEGLLAAEQ 241 (480)
T ss_pred CCCCc--------------------cChHHHHHHHHHHHHHHHHc
Done!