Query 036661
Match_columns 615
No_of_seqs 620 out of 2900
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 06:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.4E-41 1.2E-45 352.9 37.1 486 99-594 63-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.7E-41 3E-45 349.9 39.2 509 9-574 75-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.1E-28 2.8E-32 236.9 37.5 373 163-577 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.5E-27 2.2E-31 230.5 36.3 356 197-593 6-370 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.7E-28 1.6E-32 241.8 16.7 217 36-274 7-226 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.5E-26 5E-31 231.0 20.9 185 223-407 26-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 6.3E-25 2.2E-29 225.2 32.3 441 121-592 7-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.8E-25 2E-29 225.4 28.5 409 156-593 7-446 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.1E-23 1.4E-27 207.8 30.9 337 220-597 23-416 (450)
10 3fp2_A TPR repeat-containing p 99.9 4.5E-23 1.5E-27 212.6 31.8 421 121-591 26-491 (537)
11 3fp2_A TPR repeat-containing p 99.9 1.2E-21 3.9E-26 202.0 33.4 446 21-566 27-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 7.3E-22 2.5E-26 198.6 30.9 377 176-580 13-443 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 7.7E-20 2.6E-24 177.7 30.5 304 259-592 4-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 7.2E-20 2.5E-24 178.0 29.7 323 223-575 3-353 (359)
15 3hym_B Cell division cycle pro 99.9 1.6E-19 5.5E-24 173.2 28.2 287 290-579 19-322 (330)
16 1xi4_A Clathrin heavy chain; a 99.8 5.8E-16 2E-20 163.8 51.1 383 154-584 984-1377(1630)
17 3hym_B Cell division cycle pro 99.8 5.9E-19 2E-23 169.3 25.4 268 321-593 19-301 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 2.3E-15 7.8E-20 159.4 52.0 512 23-584 989-1585(1630)
19 2xm6_A Protein corresponding t 99.8 2.4E-17 8.2E-22 167.0 35.7 366 189-574 38-452 (490)
20 1fch_A Peroxisomal targeting s 99.8 4.6E-19 1.6E-23 173.0 21.6 283 304-590 36-358 (368)
21 2ooe_A Cleavage stimulation fa 99.8 8.2E-17 2.8E-21 164.9 37.6 414 154-593 12-494 (530)
22 4g1t_A Interferon-induced prot 99.8 3.5E-18 1.2E-22 172.8 25.7 369 190-602 51-470 (472)
23 2xm6_A Protein corresponding t 99.8 2.4E-16 8.1E-21 159.7 36.6 353 220-593 36-434 (490)
24 1b89_A Protein (clathrin heavy 99.8 2E-18 6.7E-23 163.8 19.4 288 202-522 15-308 (449)
25 4eqf_A PEX5-related protein; a 99.8 1.4E-18 4.9E-23 169.2 19.1 261 323-587 64-352 (365)
26 3mkr_A Coatomer subunit epsilo 99.8 5.3E-17 1.8E-21 151.4 26.7 271 301-585 7-288 (291)
27 3cv0_A Peroxisome targeting si 99.8 4.4E-18 1.5E-22 163.0 18.5 259 327-590 24-314 (327)
28 1b89_A Protein (clathrin heavy 99.8 3.9E-17 1.3E-21 155.0 23.6 285 101-419 15-307 (449)
29 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.8E-22 156.0 19.3 248 331-593 6-266 (291)
30 2ooe_A Cleavage stimulation fa 99.8 1.5E-15 5.1E-20 155.5 36.6 409 119-560 12-495 (530)
31 1fch_A Peroxisomal targeting s 99.8 8.9E-18 3E-22 163.8 16.8 257 334-593 35-316 (368)
32 4eqf_A PEX5-related protein; a 99.8 1.1E-17 3.9E-22 162.8 17.4 233 358-593 64-312 (365)
33 2pl2_A Hypothetical conserved 99.7 8.6E-17 3E-21 143.2 17.1 195 391-590 2-213 (217)
34 4g1t_A Interferon-induced prot 99.7 3.9E-15 1.3E-19 150.4 28.9 390 120-569 51-471 (472)
35 3cv0_A Peroxisome targeting si 99.7 1.6E-16 5.6E-21 152.0 17.1 258 298-560 26-318 (327)
36 3uq3_A Heat shock protein STI1 99.7 8.5E-16 2.9E-20 141.4 19.5 216 364-592 10-237 (258)
37 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5.1E-20 139.7 15.5 233 326-571 7-256 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 5E-15 1.7E-19 137.7 17.9 241 336-585 17-269 (275)
39 3u4t_A TPR repeat-containing p 99.6 9.2E-15 3.1E-19 135.7 18.8 246 296-576 6-269 (272)
40 3e4b_A ALGK; tetratricopeptide 99.6 6.3E-14 2.1E-18 139.5 25.9 376 162-591 10-421 (452)
41 3spa_A Mtrpol, DNA-directed RN 99.6 1.8E-16 6.1E-21 162.6 7.5 149 89-237 127-286 (1134)
42 2ho1_A Type 4 fimbrial biogene 99.6 1.8E-14 6.2E-19 131.9 19.2 198 394-593 37-240 (252)
43 3vtx_A MAMA; tetratricopeptide 99.6 2E-14 7E-19 124.4 18.4 167 424-593 4-172 (184)
44 2q7f_A YRRB protein; TPR, prot 99.6 5.9E-15 2E-19 134.3 15.5 197 394-593 23-224 (243)
45 1ouv_A Conserved hypothetical 99.6 1E-13 3.5E-18 128.6 23.5 189 396-593 40-253 (273)
46 2vq2_A PILW, putative fimbrial 99.6 3E-14 1E-18 127.9 19.3 200 392-593 6-213 (225)
47 2q7f_A YRRB protein; TPR, prot 99.6 8.8E-15 3E-19 133.2 15.9 213 360-576 24-241 (243)
48 3e4b_A ALGK; tetratricopeptide 99.6 2.8E-14 9.6E-19 142.1 20.0 345 228-594 8-390 (452)
49 2h6f_A Protein farnesyltransfe 99.6 6.6E-14 2.2E-18 134.8 20.4 244 326-575 99-366 (382)
50 2h6f_A Protein farnesyltransfe 99.6 3.4E-14 1.2E-18 136.8 18.2 229 360-593 98-350 (382)
51 3spa_A Mtrpol, DNA-directed RN 99.6 1.8E-15 6.3E-20 155.2 8.7 129 292-420 126-262 (1134)
52 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-13 6.5E-18 125.1 20.5 197 367-566 45-247 (252)
53 3u4t_A TPR repeat-containing p 99.6 9E-13 3.1E-17 122.1 25.4 240 258-535 3-262 (272)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.3E-14 1.5E-18 131.3 16.3 222 368-593 14-246 (275)
55 4a1s_A PINS, partner of inscut 99.6 2.6E-14 8.8E-19 141.5 15.3 260 330-590 54-371 (411)
56 4abn_A Tetratricopeptide repea 99.6 2E-14 7E-19 144.0 14.2 209 375-588 84-318 (474)
57 2pl2_A Hypothetical conserved 99.6 1.7E-13 5.7E-18 121.9 18.6 190 326-521 7-210 (217)
58 3sf4_A G-protein-signaling mod 99.6 5.7E-14 2E-18 138.7 17.0 295 291-585 7-370 (406)
59 1ouv_A Conserved hypothetical 99.6 1.2E-12 4.2E-17 121.2 24.4 225 324-561 6-255 (273)
60 3ro2_A PINS homolog, G-protein 99.6 7.2E-14 2.5E-18 134.0 16.3 261 331-592 12-333 (338)
61 2vq2_A PILW, putative fimbrial 99.5 3.5E-13 1.2E-17 120.8 19.8 205 361-568 10-222 (225)
62 3sf4_A G-protein-signaling mod 99.5 5.1E-14 1.7E-18 139.1 13.0 289 256-545 7-364 (406)
63 4e6h_A MRNA 3'-END-processing 99.5 2.6E-10 8.8E-15 117.3 39.0 216 342-562 327-575 (679)
64 3vtx_A MAMA; tetratricopeptide 99.5 5.8E-13 2E-17 115.2 15.9 168 392-562 3-175 (184)
65 4gyw_A UDP-N-acetylglucosamine 99.5 6E-13 2E-17 138.5 17.5 163 424-591 8-174 (723)
66 3as5_A MAMA; tetratricopeptide 99.5 8.4E-13 2.9E-17 114.2 15.1 164 428-594 11-176 (186)
67 4a1s_A PINS, partner of inscut 99.5 1.4E-12 4.8E-17 128.9 16.9 234 327-560 89-375 (411)
68 4e6h_A MRNA 3'-END-processing 99.4 2.1E-10 7.2E-15 118.0 32.7 438 135-594 47-573 (679)
69 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-13 4.8E-18 130.4 8.2 237 325-591 28-307 (311)
70 2ond_A Cleavage stimulation fa 99.4 9.1E-12 3.1E-16 117.4 20.4 221 341-565 33-278 (308)
71 3ulq_A Response regulator aspa 99.4 1.8E-12 6E-17 126.8 15.9 224 367-591 111-368 (383)
72 4i17_A Hypothetical protein; T 99.4 2.8E-12 9.6E-17 115.2 16.0 167 424-593 6-211 (228)
73 3ro2_A PINS homolog, G-protein 99.4 2.7E-12 9.2E-17 122.9 16.4 135 426-560 184-335 (338)
74 4abn_A Tetratricopeptide repea 99.4 1.2E-12 4.2E-17 131.1 14.4 180 410-593 84-289 (474)
75 2ond_A Cleavage stimulation fa 99.4 3.4E-11 1.2E-15 113.5 23.4 214 376-594 33-273 (308)
76 3as5_A MAMA; tetratricopeptide 99.4 2.2E-11 7.7E-16 105.1 18.7 169 394-565 8-181 (186)
77 4i17_A Hypothetical protein; T 99.4 9.9E-12 3.4E-16 111.6 16.6 206 357-573 5-225 (228)
78 3ulq_A Response regulator aspa 99.4 9E-12 3.1E-16 121.7 17.5 230 330-559 109-370 (383)
79 1hz4_A MALT regulatory protein 99.4 1.5E-10 5.1E-15 112.6 25.9 155 298-452 19-201 (373)
80 3nf1_A KLC 1, kinesin light ch 99.4 2.9E-12 9.9E-17 121.3 11.4 245 292-560 26-310 (311)
81 3q15_A PSP28, response regulat 99.3 1.3E-11 4.6E-16 120.2 15.6 222 368-590 110-364 (378)
82 1qqe_A Vesicular transport pro 99.3 4E-11 1.4E-15 112.0 15.9 202 374-590 32-268 (292)
83 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.3E-10 4.4E-15 103.8 17.5 65 533-597 152-219 (225)
84 3qky_A Outer membrane assembly 99.3 1.4E-10 4.7E-15 106.5 17.3 183 393-593 14-226 (261)
85 3mv2_B Coatomer subunit epsilo 99.3 4.1E-10 1.4E-14 102.4 18.9 242 301-564 21-289 (310)
86 3edt_B KLC 2, kinesin light ch 99.2 3.7E-11 1.3E-15 111.7 12.1 197 394-590 43-280 (283)
87 3q15_A PSP28, response regulat 99.2 5.8E-10 2E-14 108.5 20.7 227 330-558 107-366 (378)
88 4ga2_A E3 SUMO-protein ligase 99.2 1E-11 3.4E-16 102.8 5.7 141 433-577 5-149 (150)
89 4gyw_A UDP-N-acetylglucosamine 99.2 1E-10 3.5E-15 121.9 14.5 165 391-560 6-177 (723)
90 3qky_A Outer membrane assembly 99.2 1.9E-10 6.4E-15 105.6 14.5 205 356-582 12-252 (261)
91 3qou_A Protein YBBN; thioredox 99.2 2.6E-10 9E-15 105.9 14.8 175 412-590 104-283 (287)
92 2fo7_A Synthetic consensus TPR 99.2 2.8E-10 9.7E-15 92.2 13.2 127 464-592 5-133 (136)
93 2pzi_A Probable serine/threoni 99.2 8.8E-11 3E-15 123.1 12.0 168 405-577 402-583 (681)
94 3mv2_B Coatomer subunit epsilo 99.2 3E-09 1E-13 96.8 20.2 241 331-593 20-284 (310)
95 2r5s_A Uncharacterized protein 99.2 1.7E-10 5.8E-15 98.6 11.3 159 428-590 9-172 (176)
96 4ga2_A E3 SUMO-protein ligase 99.2 3.6E-11 1.2E-15 99.5 6.5 125 466-593 3-131 (150)
97 1hz4_A MALT regulatory protein 99.1 4.8E-09 1.6E-13 101.9 21.7 266 328-593 18-324 (373)
98 3rjv_A Putative SEL1 repeat pr 99.1 2.2E-09 7.5E-14 94.6 17.2 162 423-593 16-199 (212)
99 1qqe_A Vesicular transport pro 99.1 7.2E-10 2.5E-14 103.4 14.6 174 409-593 32-230 (292)
100 2fo7_A Synthetic consensus TPR 99.1 2.2E-09 7.6E-14 86.8 15.4 131 427-560 3-135 (136)
101 3gyz_A Chaperone protein IPGC; 99.1 2.5E-10 8.7E-15 93.7 9.4 102 492-593 31-135 (151)
102 3urz_A Uncharacterized protein 99.1 1.5E-09 5.2E-14 95.4 14.9 127 430-560 59-189 (208)
103 2vsy_A XCC0866; transferase, g 99.1 5.5E-10 1.9E-14 115.2 13.9 160 407-569 2-169 (568)
104 3edt_B KLC 2, kinesin light ch 99.1 2.3E-09 7.9E-14 99.4 15.7 199 360-558 44-282 (283)
105 2pzi_A Probable serine/threoni 99.1 4.5E-10 1.5E-14 117.8 11.0 154 436-593 402-565 (681)
106 4gco_A Protein STI-1; structur 99.1 8.8E-10 3E-14 87.8 10.1 108 462-571 15-124 (126)
107 3urz_A Uncharacterized protein 99.1 1.3E-09 4.4E-14 95.9 12.1 162 428-594 7-189 (208)
108 4gco_A Protein STI-1; structur 99.0 1.1E-09 3.7E-14 87.3 9.7 102 492-593 8-112 (126)
109 2ifu_A Gamma-SNAP; membrane fu 99.0 1E-08 3.5E-13 96.3 16.9 221 336-584 3-254 (307)
110 1hh8_A P67PHOX, NCF-2, neutrop 99.0 4E-09 1.4E-13 93.3 13.2 130 426-561 7-154 (213)
111 2vsy_A XCC0866; transferase, g 99.0 9.1E-09 3.1E-13 106.0 17.7 152 439-593 3-159 (568)
112 2vgx_A Chaperone SYCD; alterna 99.0 6.4E-10 2.2E-14 91.5 7.3 96 497-592 22-119 (148)
113 3dra_A Protein farnesyltransfe 99.0 5.7E-08 1.9E-12 89.5 20.2 191 397-590 70-286 (306)
114 3u3w_A Transcriptional activat 99.0 4.8E-08 1.6E-12 91.1 20.0 203 383-590 35-265 (293)
115 2uy1_A Cleavage stimulation fa 99.0 9.3E-07 3.2E-11 88.3 30.4 204 341-556 196-412 (493)
116 3qou_A Protein YBBN; thioredox 99.0 6.6E-09 2.3E-13 96.4 13.8 137 457-595 114-252 (287)
117 2qfc_A PLCR protein; TPR, HTH, 99.0 1.9E-08 6.6E-13 93.8 16.5 164 427-590 77-265 (293)
118 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.5E-08 5.1E-13 90.3 15.0 160 400-564 10-220 (225)
119 2e2e_A Formate-dependent nitri 98.9 3.2E-09 1.1E-13 90.8 8.8 125 436-563 21-150 (177)
120 1a17_A Serine/threonine protei 98.9 1.1E-08 3.9E-13 86.1 12.1 127 462-590 15-145 (166)
121 2r5s_A Uncharacterized protein 98.9 1.8E-08 6.3E-13 85.8 13.4 155 397-556 9-172 (176)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.7E-08 1.3E-12 86.9 15.6 152 396-559 8-174 (213)
123 2xcb_A PCRH, regulatory protei 98.9 7.8E-09 2.7E-13 84.5 10.0 95 498-592 20-116 (142)
124 1p5q_A FKBP52, FK506-binding p 98.9 5E-09 1.7E-13 99.6 10.1 95 496-590 196-293 (336)
125 3upv_A Heat shock protein STI1 98.9 7.2E-09 2.5E-13 82.7 9.0 96 497-592 5-102 (126)
126 2lni_A Stress-induced-phosphop 98.9 1.6E-08 5.4E-13 81.5 11.0 115 461-577 17-133 (133)
127 2c2l_A CHIP, carboxy terminus 98.9 4.2E-09 1.4E-13 97.3 8.3 192 393-591 3-199 (281)
128 2vyi_A SGTA protein; chaperone 98.9 1.7E-08 5.9E-13 80.9 10.8 117 461-579 13-131 (131)
129 1hxi_A PEX5, peroxisome target 98.8 5.1E-09 1.7E-13 82.6 7.3 96 498-593 19-116 (121)
130 2kck_A TPR repeat; tetratricop 98.8 1.2E-08 4.1E-13 79.2 9.3 100 495-594 5-109 (112)
131 1na0_A Designed protein CTPR3; 98.8 2.5E-08 8.6E-13 79.1 11.0 115 460-576 9-125 (125)
132 2ifu_A Gamma-SNAP; membrane fu 98.8 2.8E-08 9.7E-13 93.3 12.9 197 371-589 3-222 (307)
133 3gyz_A Chaperone protein IPGC; 98.8 4.3E-08 1.5E-12 80.3 12.0 105 456-562 31-138 (151)
134 4gcn_A Protein STI-1; structur 98.8 1.1E-08 3.6E-13 81.6 8.2 95 498-592 10-113 (127)
135 3dra_A Protein farnesyltransfe 98.8 1.5E-06 5E-11 80.1 23.5 226 340-571 49-302 (306)
136 2vgx_A Chaperone SYCD; alterna 98.8 6.1E-09 2.1E-13 85.6 6.9 116 448-567 10-128 (148)
137 3rjv_A Putative SEL1 repeat pr 98.8 2.7E-07 9.4E-12 81.1 17.5 172 378-559 5-199 (212)
138 3sz7_A HSC70 cochaperone (SGT) 98.8 1.5E-08 5.2E-13 85.1 8.8 111 459-571 10-122 (164)
139 4f3v_A ESX-1 secretion system 98.8 4.2E-08 1.4E-12 88.1 11.8 125 466-593 108-239 (282)
140 3q49_B STIP1 homology and U bo 98.8 3.4E-08 1.2E-12 80.0 10.1 97 496-592 9-107 (137)
141 2e2e_A Formate-dependent nitri 98.7 7.3E-08 2.5E-12 82.1 11.7 124 470-595 20-148 (177)
142 2fbn_A 70 kDa peptidylprolyl i 98.7 4.6E-08 1.6E-12 85.2 10.2 97 497-593 89-188 (198)
143 2qfc_A PLCR protein; TPR, HTH, 98.7 4.1E-07 1.4E-11 84.7 17.3 162 396-557 77-266 (293)
144 2uy1_A Cleavage stimulation fa 98.7 8.6E-07 2.9E-11 88.5 20.6 375 167-590 6-412 (493)
145 1elw_A TPR1-domain of HOP; HOP 98.7 5.8E-08 2E-12 76.1 9.8 109 461-571 5-115 (118)
146 3u3w_A Transcriptional activat 98.7 1.5E-06 5.2E-11 80.8 21.0 159 399-557 80-266 (293)
147 2xcb_A PCRH, regulatory protei 98.7 2.1E-08 7.4E-13 81.8 7.3 109 461-571 19-129 (142)
148 3gw4_A Uncharacterized protein 98.7 3E-07 1E-11 80.3 14.9 129 462-590 28-175 (203)
149 1elw_A TPR1-domain of HOP; HOP 98.7 1.5E-07 5E-12 73.7 11.6 98 496-593 4-103 (118)
150 4f3v_A ESX-1 secretion system 98.7 9.6E-08 3.3E-12 85.8 11.4 136 429-569 106-248 (282)
151 2lni_A Stress-induced-phosphop 98.7 6.1E-08 2.1E-12 77.9 9.3 100 494-593 14-115 (133)
152 2hr2_A Hypothetical protein; a 98.7 4.1E-08 1.4E-12 79.3 7.2 62 530-591 59-131 (159)
153 2dba_A Smooth muscle cell asso 98.7 2.4E-07 8.2E-12 76.0 12.2 111 460-573 28-144 (148)
154 3upv_A Heat shock protein STI1 98.7 9.8E-08 3.4E-12 76.0 9.5 111 461-573 5-123 (126)
155 3sz7_A HSC70 cochaperone (SGT) 98.7 1.7E-07 5.8E-12 78.7 11.2 95 426-523 12-106 (164)
156 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 1.8E-07 6.2E-12 92.9 13.1 96 496-591 317-415 (457)
157 1na0_A Designed protein CTPR3; 98.7 1.1E-07 3.7E-12 75.4 9.4 98 496-593 9-108 (125)
158 2xev_A YBGF; tetratricopeptide 98.6 7.4E-08 2.5E-12 77.0 8.0 90 502-591 8-105 (129)
159 2dba_A Smooth muscle cell asso 98.6 1.4E-07 4.7E-12 77.5 9.8 99 495-593 27-130 (148)
160 2if4_A ATFKBP42; FKBP-like, al 98.6 8E-08 2.7E-12 91.3 9.3 151 425-595 179-332 (338)
161 3gw4_A Uncharacterized protein 98.6 3E-07 1E-11 80.3 11.9 154 405-558 3-177 (203)
162 2vyi_A SGTA protein; chaperone 98.6 1.7E-07 5.8E-12 74.9 9.4 99 495-593 11-111 (131)
163 1a17_A Serine/threonine protei 98.6 9.8E-07 3.4E-11 74.0 14.3 129 426-557 14-146 (166)
164 3q7a_A Farnesyltransferase alp 98.6 3.2E-06 1.1E-10 78.7 17.6 32 559-590 299-330 (349)
165 3q49_B STIP1 homology and U bo 98.5 3.1E-07 1.1E-11 74.3 9.4 101 458-560 7-109 (137)
166 3rkv_A Putative peptidylprolyl 98.5 1.7E-07 5.8E-12 78.5 7.5 102 461-562 12-131 (162)
167 3dss_A Geranylgeranyl transfer 98.5 5.5E-06 1.9E-10 76.7 18.0 166 424-592 107-305 (331)
168 3k9i_A BH0479 protein; putativ 98.5 3.5E-08 1.2E-12 77.4 2.7 89 473-562 3-95 (117)
169 2c2l_A CHIP, carboxy terminus 98.5 4.4E-07 1.5E-11 83.7 10.4 114 459-574 3-118 (281)
170 1wao_1 Serine/threonine protei 98.5 1.9E-07 6.4E-12 93.2 8.4 119 466-586 12-134 (477)
171 1elr_A TPR2A-domain of HOP; HO 98.5 2.3E-07 7.9E-12 74.2 7.4 109 461-572 5-122 (131)
172 1hxi_A PEX5, peroxisome target 98.5 6.3E-07 2.2E-11 70.4 9.6 98 463-562 20-119 (121)
173 2fbn_A 70 kDa peptidylprolyl i 98.5 5.5E-08 1.9E-12 84.6 3.5 97 497-593 39-153 (198)
174 3q7a_A Farnesyltransferase alp 98.5 7.9E-05 2.7E-09 69.3 24.5 232 335-571 65-346 (349)
175 2hr2_A Hypothetical protein; a 98.5 3.9E-07 1.3E-11 73.6 7.9 106 464-572 15-146 (159)
176 3ro3_A PINS homolog, G-protein 98.4 4.5E-07 1.6E-11 75.6 7.8 93 498-590 51-157 (164)
177 3rkv_A Putative peptidylprolyl 98.4 3.8E-07 1.3E-11 76.2 7.1 92 501-592 16-127 (162)
178 4b4t_Q 26S proteasome regulato 98.4 2E-06 6.8E-11 85.2 13.3 164 427-590 57-244 (434)
179 2xev_A YBGF; tetratricopeptide 98.4 1.6E-06 5.4E-11 69.1 10.3 102 466-570 8-118 (129)
180 2kck_A TPR repeat; tetratricop 98.4 1.3E-06 4.3E-11 67.5 9.5 100 461-562 7-111 (112)
181 1elr_A TPR2A-domain of HOP; HO 98.4 6.4E-07 2.2E-11 71.5 7.8 107 427-534 6-118 (131)
182 2l6j_A TPR repeat-containing p 98.4 7E-08 2.4E-12 74.8 1.9 94 495-588 3-104 (111)
183 1p5q_A FKBP52, FK506-binding p 98.4 3.8E-06 1.3E-10 79.6 14.0 128 425-556 147-293 (336)
184 1ihg_A Cyclophilin 40; ppiase 98.4 8.5E-07 2.9E-11 85.1 9.3 89 496-584 273-363 (370)
185 1wao_1 Serine/threonine protei 98.4 1.2E-06 4E-11 87.4 10.6 125 434-561 15-154 (477)
186 4gcn_A Protein STI-1; structur 98.4 5.3E-06 1.8E-10 65.8 12.4 60 427-487 10-69 (127)
187 3k9i_A BH0479 protein; putativ 98.4 3.7E-07 1.3E-11 71.4 5.5 86 508-593 2-92 (117)
188 1dce_A Protein (RAB geranylger 98.4 1.1E-05 3.7E-10 81.9 17.5 169 409-580 44-244 (567)
189 3dss_A Geranylgeranyl transfer 98.3 6.1E-05 2.1E-09 69.8 20.4 193 375-572 90-319 (331)
190 1zu2_A Mitochondrial import re 98.3 2.5E-07 8.4E-12 74.6 3.0 84 510-593 16-122 (158)
191 3ma5_A Tetratricopeptide repea 98.3 1.9E-06 6.6E-11 64.9 7.6 66 527-592 6-71 (100)
192 2if4_A ATFKBP42; FKBP-like, al 98.3 2.8E-06 9.7E-11 80.5 10.2 153 394-563 179-334 (338)
193 3ro3_A PINS homolog, G-protein 98.3 4.7E-06 1.6E-10 69.3 10.1 133 427-559 11-160 (164)
194 3bee_A Putative YFRE protein; 98.2 3.4E-06 1.1E-10 62.0 7.5 73 525-598 3-78 (93)
195 1na3_A Designed protein CTPR2; 98.2 2.7E-06 9.2E-11 62.7 6.9 81 496-576 9-91 (91)
196 2kat_A Uncharacterized protein 98.2 1.5E-06 5E-11 67.7 5.7 81 478-560 3-85 (115)
197 4b4t_Q 26S proteasome regulato 98.2 9.1E-06 3.1E-10 80.4 12.6 160 432-591 11-204 (434)
198 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.7E-06 9.4E-11 84.4 8.1 67 528-594 317-383 (457)
199 3n71_A Histone lysine methyltr 98.2 5.4E-06 1.8E-10 82.0 9.9 126 470-595 319-468 (490)
200 1ihg_A Cyclophilin 40; ppiase 98.1 5.1E-06 1.7E-10 79.7 7.6 114 461-593 224-338 (370)
201 1dce_A Protein (RAB geranylger 98.1 4.5E-05 1.5E-09 77.4 14.3 152 439-594 43-224 (567)
202 2l6j_A TPR repeat-containing p 98.0 1.1E-05 3.6E-10 62.1 6.5 68 527-594 3-70 (111)
203 1klx_A Cysteine rich protein B 98.0 4.8E-05 1.6E-09 61.1 9.8 90 502-593 31-128 (138)
204 1na3_A Designed protein CTPR2; 97.9 2.8E-05 9.4E-10 57.1 6.3 66 528-593 9-74 (91)
205 1zu2_A Mitochondrial import re 97.9 1.3E-05 4.5E-10 64.5 4.7 50 513-562 63-125 (158)
206 3lvg_A Clathrin heavy chain 1; 97.8 3.5E-06 1.2E-10 79.3 1.4 259 21-345 56-325 (624)
207 2kat_A Uncharacterized protein 97.8 2.5E-05 8.4E-10 60.6 6.0 77 515-591 4-82 (115)
208 2kc7_A BFR218_protein; tetratr 97.8 1.4E-05 4.9E-10 59.9 4.5 81 502-590 6-89 (99)
209 1klx_A Cysteine rich protein B 97.7 0.0004 1.4E-08 55.6 11.9 112 439-559 9-128 (138)
210 2kc7_A BFR218_protein; tetratr 97.7 6E-05 2.1E-09 56.4 5.8 63 533-595 5-68 (99)
211 3n71_A Histone lysine methyltr 97.7 0.00019 6.3E-09 71.0 10.3 123 434-556 318-463 (490)
212 3lvg_A Clathrin heavy chain 1; 97.6 2.7E-05 9.2E-10 73.5 3.6 236 190-445 54-324 (624)
213 3ly7_A Transcriptional activat 97.6 0.0018 6.2E-08 60.1 15.1 137 423-561 192-343 (372)
214 3u64_A Protein TP_0956; tetrat 97.5 0.00021 7.2E-09 63.4 7.4 85 514-598 181-276 (301)
215 3ma5_A Tetratricopeptide repea 97.5 0.00054 1.9E-08 51.2 8.8 83 424-507 6-88 (100)
216 3qww_A SET and MYND domain-con 97.5 6E-05 2E-09 73.2 3.8 62 529-590 341-410 (433)
217 3qwp_A SET and MYND domain-con 97.3 0.00018 6E-09 70.1 4.5 85 506-590 297-399 (429)
218 3qww_A SET and MYND domain-con 97.2 0.0012 4E-08 64.2 9.3 93 472-564 310-423 (433)
219 1wy6_A Hypothetical protein ST 97.2 0.019 6.6E-07 43.6 13.4 141 435-594 17-157 (172)
220 3ly7_A Transcriptional activat 97.1 0.0023 7.7E-08 59.5 10.3 134 457-594 191-342 (372)
221 3bee_A Putative YFRE protein; 97.1 0.0039 1.3E-07 45.4 9.6 68 493-560 3-75 (93)
222 1qsa_A Protein (soluble lytic 97.1 0.3 1E-05 49.5 26.4 114 439-556 228-347 (618)
223 1pc2_A Mitochondria fission pr 97.1 0.0014 4.8E-08 52.1 6.9 90 476-567 14-110 (152)
224 3qwp_A SET and MYND domain-con 97.0 0.0026 8.7E-08 61.9 10.2 98 469-566 296-414 (429)
225 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0016 5.3E-08 49.0 6.8 71 499-569 8-87 (104)
226 1pc2_A Mitochondria fission pr 97.0 0.00058 2E-08 54.3 4.3 80 514-593 16-102 (152)
227 3mkq_A Coatomer beta'-subunit; 96.5 0.068 2.3E-06 57.3 17.4 158 25-217 605-763 (814)
228 1nzn_A CGI-135 protein, fissio 96.5 0.019 6.5E-07 43.8 9.0 91 476-568 17-114 (126)
229 2v5f_A Prolyl 4-hydroxylase su 96.4 0.0077 2.6E-07 45.1 6.3 66 528-593 5-77 (104)
230 3u64_A Protein TP_0956; tetrat 96.3 0.0043 1.5E-07 55.2 5.4 104 477-589 180-296 (301)
231 4h7y_A Dual specificity protei 96.3 0.013 4.4E-07 45.8 6.9 103 457-561 10-127 (161)
232 3mkq_B Coatomer subunit alpha; 96.2 0.32 1.1E-05 39.7 15.4 128 403-554 14-141 (177)
233 3mkq_A Coatomer beta'-subunit; 96.2 0.033 1.1E-06 59.8 12.8 76 398-487 633-708 (814)
234 4gns_B Protein CSD3, chitin bi 96.0 0.016 5.3E-07 59.8 8.5 60 530-589 339-398 (754)
235 3mkq_B Coatomer subunit alpha; 95.8 0.42 1.4E-05 39.0 14.5 129 433-588 13-141 (177)
236 4ady_A RPN2, 26S proteasome re 95.8 2.5 8.6E-05 44.7 32.7 27 122-148 232-258 (963)
237 4h7y_A Dual specificity protei 95.6 0.097 3.3E-06 41.0 9.2 99 422-523 10-121 (161)
238 1nzn_A CGI-135 protein, fissio 95.4 0.019 6.3E-07 43.9 4.8 69 525-593 32-105 (126)
239 1wy6_A Hypothetical protein ST 94.7 1.1 3.6E-05 34.4 12.1 141 233-391 17-157 (172)
240 1y8m_A FIS1; mitochondria, unk 94.6 0.29 9.9E-06 38.0 9.4 74 493-566 36-115 (144)
241 1y8m_A FIS1; mitochondria, unk 94.3 0.17 5.9E-06 39.3 7.4 70 525-594 36-109 (144)
242 3o48_A Mitochondria fission 1 94.2 0.23 8E-06 38.0 7.8 74 493-566 37-116 (134)
243 4ady_A RPN2, 26S proteasome re 94.1 7.3 0.00025 41.4 34.1 250 302-556 383-657 (963)
244 3o48_A Mitochondria fission 1 93.9 0.082 2.8E-06 40.4 4.9 71 524-594 36-110 (134)
245 3ffl_A Anaphase-promoting comp 93.8 0.36 1.2E-05 38.7 8.7 27 497-523 123-149 (167)
246 3ffl_A Anaphase-promoting comp 93.2 0.2 6.9E-06 40.1 6.3 56 467-522 27-89 (167)
247 2wpv_A GET4, UPF0363 protein Y 92.4 6.2 0.00021 35.8 19.0 133 192-337 35-178 (312)
248 4b4t_P 26S proteasome regulato 92.3 4 0.00014 39.7 15.6 187 337-523 29-245 (445)
249 3lpz_A GET4 (YOR164C homolog); 91.4 8.5 0.00029 35.2 18.7 134 192-338 37-181 (336)
250 1zbp_A Hypothetical protein VP 91.1 2.5 8.6E-05 37.0 11.1 122 434-566 6-138 (273)
251 4fhn_B Nucleoporin NUP120; pro 90.8 8.5 0.00029 42.8 18.0 143 364-514 817-989 (1139)
252 3txn_A 26S proteasome regulato 90.3 12 0.00042 35.3 17.1 58 430-487 104-166 (394)
253 2ff4_A Probable regulatory pro 90.3 2.3 8E-05 40.4 11.5 71 428-499 174-248 (388)
254 2ff4_A Probable regulatory pro 90.1 0.51 1.7E-05 45.1 6.6 57 533-589 176-232 (388)
255 4fhn_B Nucleoporin NUP120; pro 89.4 2.6 9E-05 46.8 12.5 192 397-590 815-1049(1139)
256 4b4t_P 26S proteasome regulato 88.2 19 0.00067 34.8 22.1 197 307-521 30-263 (445)
257 1qsa_A Protein (soluble lytic 87.7 26 0.00088 35.6 34.9 309 28-352 15-347 (618)
258 4gns_B Protein CSD3, chitin bi 87.6 3.6 0.00012 42.7 11.1 125 396-523 250-398 (754)
259 1zbp_A Hypothetical protein VP 87.6 0.48 1.6E-05 41.5 4.0 55 506-560 7-63 (273)
260 1v54_E Cytochrome C oxidase po 87.1 4.1 0.00014 29.3 7.7 63 440-504 25-87 (109)
261 3txn_A 26S proteasome regulato 86.0 24 0.0008 33.4 18.8 126 294-419 20-164 (394)
262 2uwj_G Type III export protein 82.4 11 0.00039 26.9 9.8 86 375-465 22-107 (115)
263 1v54_E Cytochrome C oxidase po 81.7 10 0.00035 27.3 7.7 47 137-183 27-73 (109)
264 2p58_C Putative type III secre 81.6 12 0.00042 26.8 10.0 86 375-465 23-108 (116)
265 2y69_E Cytochrome C oxidase su 80.5 8 0.00027 29.6 7.3 62 441-504 69-130 (152)
266 4b4t_R RPN7, 26S proteasome re 78.4 6.7 0.00023 37.9 8.5 61 462-522 133-194 (429)
267 2wpv_A GET4, UPF0363 protein Y 77.6 41 0.0014 30.5 23.4 169 295-489 35-217 (312)
268 3esl_A Checkpoint serine/threo 75.0 17 0.00056 30.3 8.5 49 510-558 93-145 (202)
269 3ltm_A Alpha-REP4; protein eng 73.5 39 0.0013 28.2 19.0 90 393-487 94-183 (211)
270 4b4t_R RPN7, 26S proteasome re 72.8 23 0.00077 34.1 10.5 96 395-490 132-238 (429)
271 2uwj_G Type III export protein 72.8 23 0.0008 25.3 10.5 86 68-158 20-105 (115)
272 2p58_C Putative type III secre 71.9 25 0.00085 25.3 9.9 79 68-150 21-99 (116)
273 3ltm_A Alpha-REP4; protein eng 71.6 44 0.0015 28.0 19.0 154 291-453 31-184 (211)
274 2y69_E Cytochrome C oxidase su 69.9 27 0.00092 26.8 7.7 59 138-197 71-129 (152)
275 3eiq_C Programmed cell death p 67.6 78 0.0027 29.3 13.4 66 397-462 220-290 (358)
276 1wdy_A 2-5A-dependent ribonucl 66.7 59 0.002 28.5 11.6 60 197-257 152-213 (285)
277 3lpz_A GET4 (YOR164C homolog); 66.4 79 0.0027 28.9 25.4 168 295-488 37-215 (336)
278 3ltj_A Alpharep-4; protein eng 64.7 59 0.002 26.8 17.3 152 393-555 27-178 (201)
279 3ltj_A Alpharep-4; protein eng 64.1 60 0.0021 26.8 19.5 85 398-487 94-178 (201)
280 3jxi_A Vanilloid receptor-rela 64.1 25 0.00084 30.7 8.3 92 25-117 8-118 (260)
281 2zu6_B Programmed cell death p 63.1 44 0.0015 30.2 9.6 66 296-361 169-239 (307)
282 2qx5_A Nucleoporin NIC96; mRNA 62.1 1.4E+02 0.0049 30.4 17.3 42 195-236 157-199 (661)
283 4a1g_A Mitotic checkpoint seri 61.0 41 0.0014 26.5 7.8 47 547-593 84-132 (152)
284 2nsz_A Programmed cell death p 60.3 52 0.0018 25.1 8.2 66 296-361 10-80 (129)
285 3bqo_A Telomeric repeat-bindin 56.3 42 0.0014 27.6 7.1 71 512-582 94-171 (211)
286 1k1a_A B-cell lymphoma 3-encod 56.1 84 0.0029 26.6 10.3 29 25-53 12-40 (241)
287 4b4t_S RPN3, 26S proteasome re 54.8 49 0.0017 32.4 8.8 63 461-523 232-297 (523)
288 2d2s_A Exocyst complex compone 54.4 55 0.0019 28.2 8.3 87 126-215 24-116 (235)
289 3kea_A K1L; tropism, ANK repea 54.3 1.2E+02 0.0039 26.9 12.2 143 60-215 34-183 (285)
290 2d2s_A Exocyst complex compone 53.9 45 0.0016 28.7 7.7 88 431-522 24-117 (235)
291 2wvi_A Mitotic checkpoint seri 53.8 55 0.0019 26.2 7.5 60 510-572 77-137 (164)
292 3b7b_A Euchromatic histone-lys 53.2 1E+02 0.0035 26.0 11.0 83 25-115 14-100 (237)
293 2ion_A PDCD4, programmed cell 53.1 44 0.0015 26.4 6.9 66 296-361 12-82 (152)
294 1ya0_A SMG-7 transcript varian 53.0 27 0.00093 34.2 6.9 57 532-588 156-212 (497)
295 2qx5_A Nucleoporin NIC96; mRNA 52.4 2.1E+02 0.0071 29.2 16.6 80 400-487 300-383 (661)
296 4b4t_S RPN3, 26S proteasome re 50.7 23 0.0008 34.6 5.9 68 496-563 231-305 (523)
297 3kae_A CDC27, possible protein 46.6 1.1E+02 0.0039 24.6 9.0 83 502-587 39-139 (242)
298 3eu9_A Huntingtin-interacting 45.4 94 0.0032 26.2 8.8 83 27-114 14-98 (240)
299 1oyz_A Hypothetical protein YI 44.4 1.6E+02 0.0055 25.7 21.5 91 494-590 171-262 (280)
300 1ug3_A EIF4GI, eukaryotic prot 44.0 1.6E+02 0.0054 27.1 10.3 62 296-357 14-79 (339)
301 1k1a_A B-cell lymphoma 3-encod 41.1 1.6E+02 0.0055 24.7 11.9 188 60-257 12-210 (241)
302 3kea_A K1L; tropism, ANK repea 40.7 1.1E+02 0.0038 27.0 8.7 145 25-182 34-185 (285)
303 3eu9_A Huntingtin-interacting 39.9 95 0.0033 26.1 8.0 16 99-114 49-64 (240)
304 3eyy_A Putative iron uptake re 39.7 35 0.0012 26.7 4.4 58 45-104 10-67 (145)
305 1wdy_A 2-5A-dependent ribonucl 39.6 1.9E+02 0.0064 25.1 11.4 84 24-115 7-95 (285)
306 3bu8_A Telomeric repeat-bindin 38.7 1.2E+02 0.0041 25.4 7.3 21 503-523 121-141 (235)
307 2zu6_B Programmed cell death p 38.6 2.2E+02 0.0076 25.6 11.3 57 193-251 6-66 (307)
308 4gq2_M Nucleoporin NUP120; bet 37.8 1.7E+02 0.0057 31.7 10.7 27 530-556 899-925 (950)
309 1bd8_A P19INK4D CDK4/6 inhibit 36.1 1.5E+02 0.005 22.8 8.1 14 100-113 43-56 (156)
310 2fe3_A Peroxide operon regulat 35.6 1.3E+02 0.0044 23.4 7.2 63 43-106 11-73 (145)
311 3i5p_A Nucleoporin NUP170; hel 35.2 3.2E+02 0.011 26.9 11.2 68 524-591 174-246 (525)
312 3eiq_C Programmed cell death p 34.8 2.8E+02 0.0095 25.7 17.4 71 296-366 220-295 (358)
313 3ubw_A 14-3-3E, 14-3-3 protein 34.5 2.3E+02 0.0079 24.7 10.2 162 431-593 37-230 (261)
314 3esl_A Checkpoint serine/threo 34.2 2E+02 0.0069 23.9 11.2 67 427-495 82-149 (202)
315 4aez_C MAD3, mitotic spindle c 33.3 74 0.0025 27.0 5.5 81 512-595 100-183 (223)
316 1wgl_A TOLL-interacting protei 33.1 28 0.00094 22.2 2.2 47 549-597 11-58 (59)
317 3hra_A Ankyrin repeat family p 33.0 1.4E+02 0.0047 24.3 7.6 52 98-154 11-66 (201)
318 2nsz_A Programmed cell death p 32.6 1.6E+02 0.0055 22.3 7.6 63 397-459 10-77 (129)
319 2fe3_A Peroxide operon regulat 32.4 91 0.0031 24.2 5.8 60 146-206 13-72 (145)
320 2crb_A Nuclear receptor bindin 32.0 54 0.0018 23.0 3.6 23 566-588 19-41 (97)
321 1n11_A Ankyrin; clathrin, BAND 31.8 3.3E+02 0.011 25.6 11.9 18 198-215 118-135 (437)
322 2etb_A Transient receptor pote 31.7 2E+02 0.0069 24.5 8.8 91 25-117 5-115 (256)
323 3t8k_A Uncharacterized protein 31.2 1.3E+02 0.0044 24.5 6.9 26 130-155 45-70 (186)
324 2fu4_A Ferric uptake regulatio 30.7 1.2E+02 0.0042 20.4 6.3 59 145-204 7-66 (83)
325 2r9g_A AAA ATPase, central reg 30.7 2.3E+02 0.0079 23.5 9.7 64 327-391 14-85 (204)
326 2xig_A Ferric uptake regulatio 30.6 1.5E+02 0.0052 23.1 6.8 64 42-106 15-78 (150)
327 3jxi_A Vanilloid receptor-rela 30.2 1.6E+02 0.0055 25.3 7.9 88 128-215 10-115 (260)
328 2ion_A PDCD4, programmed cell 29.9 1.3E+02 0.0046 23.6 6.3 62 397-458 12-78 (152)
329 2pnn_A Transient receptor pote 28.4 2.5E+02 0.0087 24.2 8.9 93 24-117 15-126 (273)
330 2w57_A Ferric uptake regulatio 28.4 1.4E+02 0.0049 23.3 6.3 63 43-106 6-69 (150)
331 3ljn_A Hypothetical protein; a 27.9 3.5E+02 0.012 24.7 10.8 39 177-215 155-195 (364)
332 1mzb_A Ferric uptake regulatio 27.9 1.3E+02 0.0046 22.9 6.0 61 44-105 8-69 (136)
333 1oyz_A Hypothetical protein YI 27.5 3E+02 0.01 23.8 23.8 22 535-557 242-263 (280)
334 2pm7_A Protein WEB1, protein t 27.4 4E+02 0.014 25.1 10.8 26 564-589 338-363 (399)
335 2rfa_A Transient receptor pote 27.2 2.7E+02 0.0093 23.1 9.8 154 25-187 6-183 (232)
336 2xig_A Ferric uptake regulatio 26.4 1.4E+02 0.0047 23.4 5.9 61 145-206 17-77 (150)
337 3b7b_A Euchromatic histone-lys 25.9 2.9E+02 0.0099 23.0 9.1 208 60-285 14-234 (237)
338 2o03_A Probable zinc uptake re 25.8 67 0.0023 24.5 3.9 46 24-69 15-60 (131)
339 2ijq_A Hypothetical protein; s 25.5 2.5E+02 0.0087 22.3 7.4 60 123-183 36-103 (161)
340 3bge_A Predicted ATPase; struc 24.8 3E+02 0.01 22.8 8.2 45 329-373 9-56 (201)
341 1bpo_A Protein (clathrin); cla 24.4 3.9E+02 0.013 25.7 9.2 72 388-460 355-429 (494)
342 3mwm_A ZUR, putative metal upt 24.3 64 0.0022 25.0 3.5 44 25-68 19-62 (139)
343 2ijq_A Hypothetical protein; s 24.2 2.7E+02 0.0091 22.2 7.0 54 502-556 39-103 (161)
344 4gq2_M Nucleoporin NUP120; bet 24.1 4.4E+02 0.015 28.4 11.1 47 462-510 899-950 (950)
345 3ygs_P Procaspase 9; apoptosis 23.9 83 0.0028 22.4 3.8 37 408-444 51-87 (97)
346 3hra_A Ankyrin repeat family p 23.7 2.9E+02 0.0098 22.2 9.9 154 26-190 9-173 (201)
347 3ctd_A Putative ATPase, AAA fa 23.7 3.2E+02 0.011 22.8 8.8 65 326-390 34-106 (213)
348 3eyy_A Putative iron uptake re 23.6 1.6E+02 0.0053 22.9 5.7 35 171-205 33-67 (145)
349 4ets_A Ferric uptake regulatio 23.1 1.2E+02 0.004 24.2 4.9 69 137-206 14-85 (162)
350 3e3v_A Regulatory protein RECX 22.9 3E+02 0.01 22.2 8.8 24 499-522 139-163 (177)
351 4ets_A Ferric uptake regulatio 22.8 1.6E+02 0.0056 23.4 5.7 71 35-106 13-86 (162)
352 1n11_A Ankyrin; clathrin, BAND 22.4 4.9E+02 0.017 24.4 13.5 173 25-215 17-201 (437)
353 2rfa_A Transient receptor pote 22.4 3.3E+02 0.011 22.5 10.6 22 233-254 161-182 (232)
354 3ygs_P Procaspase 9; apoptosis 22.2 78 0.0027 22.6 3.3 63 75-139 25-87 (97)
355 2qfz_A TBC1 domain family memb 21.6 4.6E+02 0.016 23.9 9.5 78 346-423 231-315 (345)
356 1mzb_A Ferric uptake regulatio 21.6 88 0.003 24.0 3.8 50 22-71 20-70 (136)
357 3b34_A Aminopeptidase N; prote 21.3 7.7E+02 0.026 26.3 13.2 92 494-586 762-865 (891)
358 3qil_A Clathrin heavy chain 1; 21.1 34 0.0011 25.6 1.1 70 99-176 16-85 (125)
359 2b7e_A PRE-mRNA processing pro 20.5 91 0.0031 19.8 2.9 29 137-165 3-31 (59)
360 1ug3_A EIF4GI, eukaryotic prot 20.2 2.3E+02 0.008 25.9 7.0 23 124-146 15-37 (339)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-41 Score=352.95 Aligned_cols=486 Identities=10% Similarity=-0.038 Sum_probs=403.2
Q ss_pred hhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHH
Q 036661 99 YAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH 178 (615)
Q Consensus 99 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 178 (615)
+...|.+..+...+..++.++...|+.++..+.+.|++++|+++|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567777788888888888899999999999999999999999999985 5688899999999999999999999999
Q ss_pred HHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCC-----------------CCcchHHHHHHHHhcCCChhh
Q 036661 179 SFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGL-----------------RTVVSWNSIIGGCTYGDKFDD 241 (615)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~ 241 (615)
+.+... +++..+++.++.+|.+.|++++|.++|+++.... .+..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988653 6788899999999999999999999999644211 247889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhh--HH-HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036661 242 SLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGR--LV-HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDG 318 (615)
Q Consensus 242 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 318 (615)
|++.|++|.+.+. .+...+..+...+...+..+... .+ +..+...+..+...+++.++..|.+.|++++|.++|+.
T Consensus 219 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 9999999998652 24455555665555544433322 11 44444444445556677778899999999999999999
Q ss_pred cCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHH
Q 036661 319 MCD--RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 396 (615)
Q Consensus 319 ~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 396 (615)
+.. ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 966 788899999999999999999999999999865 4477788999999999999999999999998665 667889
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA 473 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 473 (615)
++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 99999999999999999999998754 467899999999999999999999999999874 45778999999999999
Q ss_pred CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC--hhhHHHHHHHHHHhCCh
Q 036661 474 GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD--AGIWGTLLCACKIHRNI 544 (615)
Q Consensus 474 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~~~~ 544 (615)
|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|.+.|++
T Consensus 455 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 455 GNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp TCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 9999999999999853 34467889999999999999999999999984 3666 67899999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 545 EIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 545 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
++|+..++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..+.
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999886643
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-41 Score=349.87 Aligned_cols=509 Identities=8% Similarity=-0.045 Sum_probs=358.5
Q ss_pred hhhhccCCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCC
Q 036661 9 RLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSD 88 (615)
Q Consensus 9 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 88 (615)
.|+.++.++.. .|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.+... +++
T Consensus 75 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 149 (597)
T 2xpi_A 75 AQNTDSLSRED-YLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS 149 (597)
T ss_dssp -------CHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC
T ss_pred ccccchHHHHH-HHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc
Confidence 34444444444 566666666666666666666666654 3345555666666666666666666666655432 455
Q ss_pred hHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhc
Q 036661 89 IFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHA 168 (615)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 168 (615)
+.+++.++.+|.+.|++++|.++|+++...+... .++.+.++ ...+..++..+|..+..++.+.
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-----------QDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-----------cccccchhHHHHHHHHHHHHHc
Confidence 5666666666666666666666666432221000 00000000 0112233344455555555555
Q ss_pred CChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 036661 169 KHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRH 248 (615)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 248 (615)
|++++|.++|+.+.+.+. .+...+..+...+...+..+ ......+. +..
T Consensus 214 g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~--~~~~~~l~----------------------------~~~ 262 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEE--WDLVLKLN----------------------------YST 262 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHH--HHHHHHSC----------------------------THH
T ss_pred CCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhH--HHHHHhcC----------------------------Ccc
Confidence 555555555544444321 11222222222221111110 00000000 233
Q ss_pred HHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcc
Q 036661 249 MIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRV 325 (615)
Q Consensus 249 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~ 325 (615)
+...+..+...+|+.++..+.+.|+++.|..+++.+.+. +++..++..++..|.+.|++++|.++|+++ .+.+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 340 (597)
T 2xpi_A 263 YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340 (597)
T ss_dssp HHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT
T ss_pred cccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH
Confidence 333344445556666777788888888888888887765 578888999999999999999999999987 344777
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 036661 326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 405 (615)
Q Consensus 326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (615)
+++.++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 89999999999999999999999998653 5678889999999999999999999999998765 556789999999999
Q ss_pred hcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661 406 KCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGY 482 (615)
Q Consensus 406 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 482 (615)
+.|++++|.++|+++.. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++
T Consensus 419 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999987654 477899999999999999999999999999874 45788999999999999999999999
Q ss_pred HHHHHHhh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661 483 FNLMTKVY---QVNPE--LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLF 555 (615)
Q Consensus 483 ~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 555 (615)
|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++. .+.+..++..++.+|...|++++|.+.+++++
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99998542 45677 6799999999999999999999999986 44478899999999999999999999999999
Q ss_pred ccCCCCCCChHhHHHHHHc
Q 036661 556 ELEPHSAAPYVEMANIYAL 574 (615)
Q Consensus 556 ~~~p~~~~~~~~l~~~~~~ 574 (615)
+++|+++..+..++.+|..
T Consensus 578 ~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 578 AISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHCTTCHHHHHHHHHTTC-
T ss_pred hcCCCChHHHHHHHHHHhc
Confidence 9999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.1e-28 Score=236.95 Aligned_cols=373 Identities=11% Similarity=0.061 Sum_probs=265.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhh
Q 036661 163 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDD 241 (615)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 241 (615)
..+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+..| +..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34455666666666666655542 22334455555555666666666666655444322 44555666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc--
Q 036661 242 SLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM-- 319 (615)
Q Consensus 242 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-- 319 (615)
|++.|+++.... +.+...+..+..++.+.|++++|.+.|+++
T Consensus 86 A~~~~~~al~~~------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHALRLK------------------------------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666655432 223344556666666666666666666665
Q ss_pred -CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHH
Q 036661 320 -CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN 398 (615)
Q Consensus 320 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (615)
.+.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+++.|...++.+.+.+ +.+...+.
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 22233455666666777777777777777776652 3345667777777777777777777777777654 44566777
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 036661 399 ALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF 475 (615)
Q Consensus 399 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 475 (615)
.+...+...|++++|...+++... .+..++..+..++...|++++|+..++++.+.+ +.+..++..+..++.+.|+
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence 788888888888888888876543 356788888899999999999999999998863 3346788888899999999
Q ss_pred hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661 476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYR 553 (615)
Q Consensus 476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 553 (615)
+++|...++++.+. .+.+..++..++.++.+.|++++|.+.++++. ..| +...+..++..+.+.|++++|...+++
T Consensus 287 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998853 35567788889999999999999999999887 334 466888888999999999999999999
Q ss_pred HhccCCCCCCChHhHHHHHHccCC
Q 036661 554 LFELEPHSAAPYVEMANIYALGGR 577 (615)
Q Consensus 554 ~~~~~p~~~~~~~~l~~~~~~~g~ 577 (615)
+++++|+++.+|..++.++...|+
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.5e-27 Score=230.45 Aligned_cols=356 Identities=14% Similarity=0.063 Sum_probs=291.2
Q ss_pred HHHHHccCCHHHHHHHHHhcccCCCC-cchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhh
Q 036661 197 ISAYAKCNDLKMAELVFRGIEEGLRT-VVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALV 275 (615)
Q Consensus 197 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 275 (615)
...+.+.|++++|.+.+..+.+..|+ ...+..+...+...|++++|...++...+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~------------------------ 61 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------------------------ 61 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------------
Confidence 34455566666666666555444332 33344444455555555555555555443
Q ss_pred hhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661 276 QGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA 352 (615)
Q Consensus 276 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 352 (615)
.. +.+..++..+...|.+.|++++|...|+++ .+.+..+|..+..++.+.|++++|.+.|+++.+
T Consensus 62 -----------~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 62 -----------QN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp -----------HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred -----------cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 456677889999999999999999999987 334556799999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHH
Q 036661 353 AGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWT 429 (615)
Q Consensus 353 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 429 (615)
.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.. .+...|.
T Consensus 130 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T 1w3b_A 130 YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 64 3344566777888889999999999999998875 55678899999999999999999999998765 4567899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 036661 430 TMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK 509 (615)
Q Consensus 430 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 509 (615)
.+...+...|++++|+..+++..+.. +.+..++..+..++...|++++|...++++.+. .+.+...+..++.++.+.
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999863 334678999999999999999999999999853 233467889999999999
Q ss_pred CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661 510 GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTM 587 (615)
Q Consensus 510 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 587 (615)
|++++|.+.++++. .+++..++..++..+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++
T Consensus 285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999987 5567788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCc
Q 036661 588 MKRNQV 593 (615)
Q Consensus 588 ~~~~~~ 593 (615)
+.+..+
T Consensus 365 a~~~~p 370 (388)
T 1w3b_A 365 AIRISP 370 (388)
T ss_dssp HHTTCT
T ss_pred HHhhCC
Confidence 987543
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.7e-28 Score=241.75 Aligned_cols=217 Identities=10% Similarity=0.015 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhcc
Q 036661 36 HKALLLFRRMKKNDIEPNNL-TFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDK 114 (615)
Q Consensus 36 ~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 114 (615)
..+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777766554 58888999999999999999999999999999999999999999887764432
Q ss_pred CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHH
Q 036661 115 MPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCN 194 (615)
Q Consensus 115 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (615)
.+.+.+++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1345578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHhcccC--CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCch
Q 036661 195 TWISAYAKCNDLKMAELVFRGIEEG--LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPE 272 (615)
Q Consensus 195 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 272 (615)
.+|.+|++.|++++|.++|++|.+. .|+..+|+.+|.+|++.|++++|.++|++|.+.|..|+..||+.++..+...+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999998876 88999999999999999999999999999999999999999999998887654
Q ss_pred hh
Q 036661 273 AL 274 (615)
Q Consensus 273 ~~ 274 (615)
..
T Consensus 225 a~ 226 (501)
T 4g26_A 225 AT 226 (501)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.5e-26 Score=231.00 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=167.4
Q ss_pred cchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCc---------hhhhhhhHHHHHHHHhcCCCCh
Q 036661 223 VVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCP---------EALVQGRLVHSHGIHYGFDLDV 293 (615)
Q Consensus 223 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~ 293 (615)
...++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++. +.++.|..+|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 3457788899999999999999999999999999999999999988754 4467889999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 036661 294 SVINTLISMYSKCGDIDSARFLFDGM----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGC 369 (615)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 369 (615)
.+|++++.+|++.|++++|.++|++| ..||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988 56789999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661 370 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 407 (615)
Q Consensus 370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (615)
++.|+.++|.+++++|.+.+..|+..+|+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.3e-25 Score=225.16 Aligned_cols=441 Identities=9% Similarity=-0.077 Sum_probs=229.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHH
Q 036661 121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAY 200 (615)
Q Consensus 121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (615)
..|......+.+.|++++|++.|+++.+.. |+...+..+..++...|+++.|...++.+++.+ +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345666777888888888888888888754 677888888888888888888888888888764 33556778888888
Q ss_pred HccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhH
Q 036661 201 AKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRL 279 (615)
Q Consensus 201 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 279 (615)
...|++++|...|+++....| +......++..+........+.+.+..+...+..|+...+..-.........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 157 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN------ 157 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C------
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC------
Confidence 888888888888887766533 3334444444333322222333333222222211221111110000000000
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcccHHHHHHHHHh---cCChhHHHHHHHHHHH---
Q 036661 280 VHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDR-TRVSWTAMISGYAQ---KGDLDEALRLFFAMEA--- 352 (615)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~--- 352 (615)
.|+...... +.......... ..+..+ +...+......+.. .|++++|...|+++.+
T Consensus 158 ----------~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 158 ----------LPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ----------CCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred ----------CchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence 011100000 00000000000 000001 11122222222222 4555555555555544
Q ss_pred --CCC--------CCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 036661 353 --AGE--------VPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE 422 (615)
Q Consensus 353 --~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 422 (615)
... +.+...+..+...+...|+++.|...++.+.+.... ...+..+...+...|++++|...++++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 298 (514)
T 2gw1_A 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALK 298 (514)
T ss_dssp HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred hhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 210 112234444455555555555555555555554322 55555555555566666665555554433
Q ss_pred ---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHH
Q 036661 423 ---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHY 499 (615)
Q Consensus 423 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 499 (615)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+
T Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 375 (514)
T 2gw1_A 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVP 375 (514)
T ss_dssp TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHH
T ss_pred cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHH
Confidence 234455666666666666666666666666542 223445555666666666666666666666542 12234455
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHH---hCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661 500 SCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKI---HRNIEIGEYVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l 568 (615)
..++.++.+.|++++|.+.++++. ..++ ...+..++..+.. .|++++|...++++++.+|+++.++..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 556666666666666666666553 1111 2255556666666 6666666666666666666666666666
Q ss_pred HHHHHccCChHHHHHHHHHHHhcC
Q 036661 569 ANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
+.+|.+.|++++|.+.++++.+..
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 666666666666666666665544
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.8e-25 Score=225.43 Aligned_cols=409 Identities=11% Similarity=-0.042 Sum_probs=288.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHh
Q 036661 156 VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCT 234 (615)
Q Consensus 156 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 234 (615)
..+......+...|+++.|...++.+++.. |+..++..+..+|.+.|++++|...|+++.+..| +..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345556677888999999999999999876 6888899999999999999999999998776644 5678888899999
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036661 235 YGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARF 314 (615)
Q Consensus 235 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 314 (615)
..|++++|+..|+++...+. ++.......+..+........+...+..+...+..|+......-. .
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~ 150 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK-------------E 150 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh-------------H
Confidence 99999999999999988753 333333333333322222222222222222211111111000000 0
Q ss_pred HHhcc-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhc---ccchhhHHHHHHHHHHh---
Q 036661 315 LFDGM-CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCG---QSGALELGKWFDNYACS--- 387 (615)
Q Consensus 315 ~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~--- 387 (615)
..... ..|+.. .+..+.......... .....+.+...+......+. ..|+++.|..+++.+.+
T Consensus 151 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 151 RKDKQENLPSVT----SMASFFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ------CCCCHH----HHHHHHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCchhH----HHHHHHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence 00000 000100 111111111100000 00000122334444443333 48999999999999887
Q ss_pred --cCC--------CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036661 388 --GGL--------KDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELD 455 (615)
Q Consensus 388 --~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 455 (615)
... +.+..++..+...+...|++++|...++++.. |+...+..+..++...|++++|...++++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 311 23456788889999999999999999998754 447788999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 036661 456 LRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGT 533 (615)
Q Consensus 456 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 533 (615)
+.+...+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++++. .+.+...+..
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 377 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHH
Confidence 445678889999999999999999999999853 23356788889999999999999999999986 3445678888
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCCCCCC------ChHhHHHHHHc---cCChHHHHHHHHHHHhcCc
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEPHSAA------PYVEMANIYAL---GGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 593 (615)
++..+...|++++|...++++++..|+++. .+..++.+|.. .|++++|.+.++++.+...
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999998876 89999999999 9999999999999987653
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4.1e-23 Score=207.78 Aligned_cols=337 Identities=10% Similarity=0.012 Sum_probs=238.8
Q ss_pred CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHH
Q 036661 220 LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTL 299 (615)
Q Consensus 220 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 299 (615)
+.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+.+.+ +.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~-------- 92 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MD-------- 92 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT--------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC--------
Confidence 3456677888888888888888888888887643 2334444444444555555555555555544443 22
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHH----------
Q 036661 300 ISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL----VTVLSM---------- 365 (615)
Q Consensus 300 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l---------- 365 (615)
+...+..+...|.+.|++++|...|+++.+.. |+. ..+..+
T Consensus 93 -----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 93 -----------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555554432 221 222222
Q ss_pred --HHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCC
Q 036661 366 --ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGE 440 (615)
Q Consensus 366 --l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 440 (615)
...+...|+++.|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++.. .+..+|..++.+|...|+
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334666777788888887777654 45667778888888888888888888887654 467788888999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHH
Q 036661 441 FVEALDLFHQMMELDLRPN-RVTFLAV------------LQACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCM 502 (615)
Q Consensus 441 ~~~a~~~~~~~~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l 502 (615)
+++|+..++++.+. .|+ ...+..+ ...+...|++++|..+|+++.+. .|+ ...+..+
T Consensus 227 ~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 227 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERI 301 (450)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHH
Confidence 99999999998876 444 3444444 77889999999999999999853 444 3478888
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH-----------
Q 036661 503 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA----------- 569 (615)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~----------- 569 (615)
+.++.+.|++++|.+.++++. .+.+...+..++.+|...|++++|...++++++++|+++.++..++
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999986 4446788999999999999999999999999999999999999998
Q ss_pred -HHHHccC-----ChHHHHHHHHH-HHhcCcccCC
Q 036661 570 -NIYALGG-----RWDGVANLRTM-MKRNQVKKFP 597 (615)
Q Consensus 570 -~~~~~~g-----~~~~A~~~~~~-~~~~~~~~~~ 597 (615)
+.|...| +.+++.+.+++ ..+..+.+.+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 4466666 56777888886 4555544433
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4.5e-23 Score=212.61 Aligned_cols=421 Identities=10% Similarity=-0.003 Sum_probs=201.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHH
Q 036661 121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAY 200 (615)
Q Consensus 121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (615)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|+++.|.+.++.+++.. +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456667777777788888888887777653 2355667777777777777777777777777664 33556777777788
Q ss_pred HccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHC------CCCCCHHhHHHHHHhccCchhh
Q 036661 201 AKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYD------GFRPDVTTVVSLLSSCVCPEAL 274 (615)
Q Consensus 201 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~ 274 (615)
...|++++|...|+.+.. .|+ ..+..+..+...+....+...++++... ...|+.......
T Consensus 104 ~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------- 170 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL-NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF---------- 170 (537)
T ss_dssp HHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH----------
T ss_pred HHcCCHHHHHHHHHHHhc-CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH----------
Confidence 888888888888764332 222 1112223333344456677777666432 122333332222
Q ss_pred hhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc---cHHHHHHHHHh--------cCChhHH
Q 036661 275 VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRV---SWTAMISGYAQ--------KGDLDEA 343 (615)
Q Consensus 275 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~--------~~~~~~a 343 (615)
....+.+.+...+......+.. ....+...+.. .|++++|
T Consensus 171 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 171 -----------------------------FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp -----------------------------HHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred -----------------------------HHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 2223333333333222222111 11111111111 1234444
Q ss_pred HHHHHHHHHCCCCCCH-------HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 036661 344 LRLFFAMEAAGEVPDL-------VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL 416 (615)
Q Consensus 344 ~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 416 (615)
..+++++.+.. +.+. .++..+...+...|+++.|...++.+.+.. |+...+..+...+...|++++|.+.
T Consensus 222 ~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 222 TDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHH
Confidence 44444444321 1111 122233333444444444444444444432 2234444444444445555555544
Q ss_pred HhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC
Q 036661 417 FYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN 493 (615)
Q Consensus 417 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 493 (615)
++++.. .+..+|..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..+++++.+. .+
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~ 375 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FP 375 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 444332 233445555555555555555555555555432 122344444555555555555555555555432 12
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----ChhhHHHHHHHHHHh----------CChhHHHHHHHHHh
Q 036661 494 PELNHYSCMADLLGRKGKLKEALDFVQSMP-I---KS----DAGIWGTLLCACKIH----------RNIEIGEYVAYRLF 555 (615)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~ 555 (615)
.+...+..++.++...|++++|.+.++++. . .+ ....+......+... |++++|...+++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 223344455555555555555555555442 0 00 011122233344444 55555555555555
Q ss_pred ccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 556 ELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 556 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
+.+|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.2e-21 Score=202.04 Aligned_cols=446 Identities=10% Similarity=-0.016 Sum_probs=276.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhh
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYA 100 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (615)
.|..+...+.+.|++++|++.|+++.+..+. ++..+..+..++...|++++|...++.+++.+ +.+...+..+..++.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 5666677777777777777777777765432 55666667777777777777777777776654 344555555666666
Q ss_pred cCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 036661 101 KCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF 180 (615)
Q Consensus 101 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 180 (615)
..|++++|...|+.+ ..+....+..+..+...+....|.+.++.+.... |+
T Consensus 105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~-------------------------- 155 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EG-------------------------- 155 (537)
T ss_dssp HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cc--------------------------
Confidence 666666666655422 1111112222333333333444555444443211 00
Q ss_pred HHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcc-hHHHHHHHHhcC--------CChhhHHHHHHHHHH
Q 036661 181 GIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVV-SWNSIIGGCTYG--------DKFDDSLNFYRHMIY 251 (615)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~--------~~~~~a~~~~~~m~~ 251 (615)
..+........+..+....+.+.+...+.......+... ....+...+... |++++|+.+++++.+
T Consensus 156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~ 230 (537)
T 3fp2_A 156 -----RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS 230 (537)
T ss_dssp --------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 000111112233334444455554444444332111111 111111111111 133333333333332
Q ss_pred CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHH
Q 036661 252 DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMI 331 (615)
Q Consensus 252 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll 331 (615)
.. +.+...+..+. .++..+.
T Consensus 231 -----------------------------------~~-p~~~~~~~~~~------------------------~~~~~~g 250 (537)
T 3fp2_A 231 -----------------------------------AN-TVDDPLRENAA------------------------LALCYTG 250 (537)
T ss_dssp --------------------------------------CCCHHHHHHHH------------------------HHHHHHH
T ss_pred -----------------------------------HC-CCcchhhHHHH------------------------HHHHHHH
Confidence 21 11111111111 1234455
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661 332 SGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 411 (615)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (615)
..+...|++++|...+++..+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 5677778888888888887775 3557777788888888888888888888887765 456778888889999999999
Q ss_pred HHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 036661 412 DARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 412 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 488 (615)
+|.+.++++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999887654 356788899999999999999999999999873 44557888889999999999999999999875
Q ss_pred hhCCCCC----hhHHHHHHHHHHhc----------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661 489 VYQVNPE----LNHYSCMADLLGRK----------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAY 552 (615)
Q Consensus 489 ~~~~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 552 (615)
...-.+. ...+..++.++.+. |++++|...++++. .+.+...+..++..+...|++++|...++
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4322222 12345566778888 99999999999987 44456788899999999999999999999
Q ss_pred HHhccCCCCCCChH
Q 036661 553 RLFELEPHSAAPYV 566 (615)
Q Consensus 553 ~~~~~~p~~~~~~~ 566 (615)
+++++.|+++....
T Consensus 487 ~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 487 DSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHC--CHHHHH
T ss_pred HHHHhCCCcHHHHH
Confidence 99999998765443
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=7.3e-22 Score=198.64 Aligned_cols=377 Identities=10% Similarity=-0.034 Sum_probs=255.5
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCC
Q 036661 176 SVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGF 254 (615)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 254 (615)
..+....... +.+...+..+...+.+.|++++|..+|+++... +.+..+|..+..++...|++++|+..|+++.+.+.
T Consensus 13 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 13 LGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3444444332 346778999999999999999999999998765 44688899999999999999999999999998752
Q ss_pred CCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHH
Q 036661 255 RPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDV---SVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMI 331 (615)
Q Consensus 255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll 331 (615)
.+...+..+...+...|+++.|...++.+.+.. +.+. ..+..+...+... .+..+.
T Consensus 92 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a 150 (450)
T 2y4t_A 92 -DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQA 150 (450)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHH
T ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHH
Confidence 346677777777888888888888888777653 2223 4444443332111 112233
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661 332 SGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 411 (615)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (615)
..+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|+++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 44556666666666666666542 3455566666666666677777777666666543 445566666777777777777
Q ss_pred HHHHHHhcCCC---CChHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhh
Q 036661 412 DARELFYALPE---KTVVSWTTM------------IAGCALNGEFVEALDLFHQMMELDLRPN-----RVTFLAVLQACT 471 (615)
Q Consensus 412 ~A~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~ 471 (615)
+|...|+++.. .+...+..+ +..+...|++++|...++++.+. .|+ ...+..+..++.
T Consensus 229 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHH
Confidence 77777766543 233333333 77888899999999999999885 444 346777888889
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHH------------
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCA------------ 537 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~------------ 537 (615)
+.|++++|+..++++.+. .+.+...+..++.+|...|++++|.+.++++. ..|+ ...+..+..+
T Consensus 307 ~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence 999999999999988753 23356788889999999999999999998876 4554 4455555532
Q ss_pred HHHhC-----ChhHHHHHHHH-HhccCCCCCC----------ChHhHHHHHHccCChHH
Q 036661 538 CKIHR-----NIEIGEYVAYR-LFELEPHSAA----------PYVEMANIYALGGRWDG 580 (615)
Q Consensus 538 ~~~~~-----~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 580 (615)
|...| +.+++.+.+++ +++..|++.. .+..++.+|...|+.++
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22233 66788888886 7888887543 23344555555555444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=7.7e-20 Score=177.74 Aligned_cols=304 Identities=11% Similarity=0.029 Sum_probs=170.2
Q ss_pred HhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHH
Q 036661 259 TTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYA 335 (615)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~ 335 (615)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...+...|++++|...|+.+ .+.+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 444555555566666666666666666543 334555566666666666666666666554 2223445555666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661 336 QKGDLDEALRLFFAMEAAGEVP----DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 411 (615)
Q Consensus 336 ~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (615)
..|++++|...+++..+. .| +...+..+.... . ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 666666666666665553 23 122222221000 0 000111245556666666
Q ss_pred HHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 036661 412 DARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 412 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 488 (615)
+|.+.++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666665433 344556666666666666666666666666542 33445666666666666666666666666653
Q ss_pred hhCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHHhCC-CCCC-h----hhHHHHHHHHHHhCChhHHHH
Q 036661 489 VYQVNPE-LNHYS------------CMADLLGRKGKLKEALDFVQSMP-IKSD-A----GIWGTLLCACKIHRNIEIGEY 549 (615)
Q Consensus 489 ~~~~~~~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~----~~~~~l~~~~~~~~~~~~A~~ 549 (615)
. .|+ ...+. .++..+.+.|++++|.+.++++. ..|+ . ..+..++.++...|++++|..
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 2 222 12111 22555666677777777666654 2232 2 123345566666677777777
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 550 VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 550 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
.++++++.+|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7777777777666677777777777777777777776666544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=7.2e-20 Score=177.96 Aligned_cols=323 Identities=9% Similarity=-0.017 Sum_probs=243.0
Q ss_pred cchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHH
Q 036661 223 VVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISM 302 (615)
Q Consensus 223 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (615)
+..+..+...+...|++++|+..|+++.+... .+...+..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45677788899999999999999999988642 457788888899999999999999999999875 4567889999999
Q ss_pred HHhcCCHHHHHHHHhccCCCCc------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhh
Q 036661 303 YSKCGDIDSARFLFDGMCDRTR------VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALE 376 (615)
Q Consensus 303 ~~~~~~~~~a~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 376 (615)
+...|++++|...|+.....++ ..+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999999844333 22322211000 011222334445556666
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036661 377 LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMME 453 (615)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 453 (615)
.|...++.+.+.. +.+...+..+...+...|++++|...++++.. .+..++..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666655543 44556666777777777777777777776544 3566778888888888888888888888887
Q ss_pred cCCCCCHHHHH------------HHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHH
Q 036661 454 LDLRPNRVTFL------------AVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-----NHYSCMADLLGRKGKLKEAL 516 (615)
Q Consensus 454 ~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~ 516 (615)
.. +.+...+. .+...+...|++++|...++++.+. .|+. ..+..++.++...|++++|.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 53 22333332 2366788999999999999999864 3432 23556889999999999999
Q ss_pred HHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661 517 DFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG 575 (615)
Q Consensus 517 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 575 (615)
+.++++. .+.+...+..++..+...|++++|...++++++++|+++..+..+..++...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999987 4446778899999999999999999999999999999999888888876544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.6e-19 Score=173.24 Aligned_cols=287 Identities=11% Similarity=0.017 Sum_probs=230.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036661 290 DLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMI 366 (615)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 366 (615)
+.+...+..+...+...|++++|.++|+++ .+.+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455666777888888889999999988887 33355567778888888999999999999888763 44566777788
Q ss_pred Hhhcccc-hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChH
Q 036661 367 SGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFV 442 (615)
Q Consensus 367 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 442 (615)
..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|.+.++++.. .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8899999998888765 45567788888999999999999999887654 34567777888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCC-------CCChhHHHHHHHHHHhcCChHHH
Q 036661 443 EALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV-------NPELNHYSCMADLLGRKGKLKEA 515 (615)
Q Consensus 443 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A 515 (615)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+...- +.....+..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998863 445678888888999999999999999988754211 33356788899999999999999
Q ss_pred HHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH-HccCChH
Q 036661 516 LDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY-ALGGRWD 579 (615)
Q Consensus 516 ~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 579 (615)
.+.++++. .+.+...+..++..+...|++++|...++++++++|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99998876 3445668888889999999999999999999999999999999999988 4556543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=5.8e-16 Score=163.83 Aligned_cols=383 Identities=12% Similarity=0.084 Sum_probs=292.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcC--CCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHH
Q 036661 154 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGV--DADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIG 231 (615)
Q Consensus 154 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~ 231 (615)
++.-.....+++...|.+.++.++++...-.+- ..+....+.++.+..+. +..+..++..++.. .+ ...+..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~ 1057 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIAN 1057 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHH
Confidence 344456677888889999999999998884321 12345666677777776 55666666665551 11 344677
Q ss_pred HHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHH
Q 036661 232 GCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDS 311 (615)
Q Consensus 232 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (615)
.+...|.+++|..+|++.. -.......++. ..+++++|.++.... .++.+|..+..++...|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 7888999999999999862 11122233332 567788888887754 347788999999999999999
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCC
Q 036661 312 ARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK 391 (615)
Q Consensus 312 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 391 (615)
|...|.+. .|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.++++....+.. .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------C
Confidence 99999775 567788889999999999999999998877654 333333358888888888886444431 4
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 036661 392 DNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACT 471 (615)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 471 (615)
++...+..+...|...|++++|..+|... ..|..++.++.+.|++++|.+.+++. .+..+|..+..+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45566777999999999999999999986 47999999999999999999999876 35588988999999
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHH--hCChhHH
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKI--HRNIEIG 547 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~--~~~~~~A 547 (615)
..|++..|......+ ..++..+..++..|.+.|.+++|+.+++... ..| ....+..+...+.+ -++..++
T Consensus 1262 e~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 999999988766543 3456667789999999999999999998876 333 34466666666655 4578888
Q ss_pred HHHHHHHhccCC-----CCCCChHhHHHHHHccCChHHHHHH
Q 036661 548 EYVAYRLFELEP-----HSAAPYVEMANIYALGGRWDGVANL 584 (615)
Q Consensus 548 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 584 (615)
.+.|.....+.| +++..|..++.+|.+.|+|++|...
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 889998888887 7788999999999999999999843
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.9e-19 Score=169.31 Aligned_cols=268 Identities=10% Similarity=0.030 Sum_probs=231.1
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHH
Q 036661 321 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNAL 400 (615)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 400 (615)
+.+...+..+...+...|++++|+++++++.... +.+...+..++..+...|+++.|..+++.+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3466678888999999999999999999998764 4445566667788889999999999999998865 5667888899
Q ss_pred HHHHHhcC-ChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCch
Q 036661 401 IDMYSKCG-SIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFL 476 (615)
Q Consensus 401 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 476 (615)
...+...| ++++|.+.|+++.. .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998665 456789999999999999999999999999874 33456777789999999999
Q ss_pred HHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----------CCChhhHHHHHHHHHHhCChh
Q 036661 477 EKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I----------KSDAGIWGTLLCACKIHRNIE 545 (615)
Q Consensus 477 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~ 545 (615)
++|...++++.+. .+.+...+..++.++...|++++|...++++. . +.....+..++.++...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999852 34456788899999999999999999998875 1 333568889999999999999
Q ss_pred HHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 546 IGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 546 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+|+..++++++.+|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998877554
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=2.3e-15 Score=159.39 Aligned_cols=512 Identities=11% Similarity=0.065 Sum_probs=263.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCcccHHHHHHHHH---------------------------hcCCchhH
Q 036661 23 NSQIREAVDKNEAHKALLLFRRMKKNDIE--PNNLTFPFIAKACA---------------------------KLSDFLYS 73 (615)
Q Consensus 23 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~---------------------------~~~~~~~a 73 (615)
...+++|+..|.+.+|++++++..-.+.. -+...-+.++.+.. ..|.+++|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 56789999999999999999999843210 12233333443333 33444444
Q ss_pred hHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcC
Q 036661 74 QMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQA 153 (615)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 153 (615)
..+|+... ......+.++ -..+++++|.++.+++. +..+|..+..++...|++++|++.|.+. -
T Consensus 1069 f~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 44444421 1111111111 13344555555544442 2445556666666666666666666442 2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHH
Q 036661 154 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGC 233 (615)
Q Consensus 154 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 233 (615)
|...|..++.++.+.|+++++.+.+...++.. +++...+.++.+|.+.+++++...+. . .++...|..+...|
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~--~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N--GPNNAHIQQVGDRC 1205 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h--CCCHHHHHHHHHHH
Confidence 45555556666666666666666666555543 22223334566666666655433332 1 33444555555666
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 036661 234 TYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR 313 (615)
Q Consensus 234 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 313 (615)
...|++++|..+|... ..|..+...+.+.|+++.|.+.++.. .+..+|..+..+|...|++..|.
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence 6666666666666553 25556666666666666666666554 23455666666666666666666
Q ss_pred HHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhc--ccchhhHHHHHHHHHHhcCCC
Q 036661 314 FLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCG--QSGALELGKWFDNYACSGGLK 391 (615)
Q Consensus 314 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~ 391 (615)
..... ...+...+..++..|.+.|.+++|+.+++...... +.....|+-+...++ +.++..++.+.|..- .+++
T Consensus 1271 ~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~ 1346 (1630)
T 1xi4_A 1271 MCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIP 1346 (1630)
T ss_pred HHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccc
Confidence 65543 22233445566777777777777777776655432 222233333333333 333444444443322 1222
Q ss_pred C------chHHHHHHHHHHHhcCChHHHHHHHhcCC--------------C-CChHHHHHHHHHHHhcC-----------
Q 036661 392 D------NVMVCNALIDMYSKCGSIGDARELFYALP--------------E-KTVVSWTTMIAGCALNG----------- 439 (615)
Q Consensus 392 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~-~~~~~~~~l~~~~~~~~----------- 439 (615)
+ ...+|..++..|.+.|+++.|...+-+-. . .|+..|...+.-|...+
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l 1426 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL 1426 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHh
Confidence 2 45567777777777777777763332221 1 34445555555554433
Q ss_pred ----ChHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHh------hC-CCCChhH
Q 036661 440 ----EFVEALDLFHQMMEL----------DLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKV------YQ-VNPELNH 498 (615)
Q Consensus 440 ----~~~~a~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~ 498 (615)
|++++.++|...-.. ....+...-..+...+....+++.-..-.+....- .. -+.+..-
T Consensus 1427 ~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~ 1506 (1630)
T 1xi4_A 1427 SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIE 1506 (1630)
T ss_pred hhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHH
Confidence 444444444311000 00111111122222333333332211111110000 00 0111112
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661 499 YSCMADLLG-RKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGR 577 (615)
Q Consensus 499 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 577 (615)
+..++..+. +.|+|..|.+++++.. .|...+.+..++|+.+.+++++.-..+. .+.++|....-++...=+
T Consensus 1507 frrIAa~ly~~n~~~~~ai~l~k~d~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~--~~~E~f~a~Ly~cy~l~~ 1578 (1630)
T 1xi4_A 1507 FRRIAAYLFKGNNRWKQSVELCKKDS------LYKDAMQYASESKDTELAEELLQWFLQE--EKRECFGACLFTCYDLLR 1578 (1630)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcc------CHHHHHHHHHHcCCHHHHHHHHHHHHhc--CChhHHHHHHHHHhccCC
Confidence 344444433 4488888888888755 4555677777888888888887777766 445667766666666666
Q ss_pred hHHHHHH
Q 036661 578 WDGVANL 584 (615)
Q Consensus 578 ~~~A~~~ 584 (615)
+|-+.++
T Consensus 1579 pd~vle~ 1585 (1630)
T 1xi4_A 1579 PDVVLET 1585 (1630)
T ss_pred chHHHHH
Confidence 6666553
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=2.4e-17 Score=167.02 Aligned_cols=366 Identities=11% Similarity=-0.023 Sum_probs=258.6
Q ss_pred ccchHHHHHHHHHc----cCCHHHHHHHHHhcccCCCCcchHHHHHHHHhc----CCChhhHHHHHHHHHHCCCCCCHHh
Q 036661 189 DVSVCNTWISAYAK----CNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTY----GDKFDDSLNFYRHMIYDGFRPDVTT 260 (615)
Q Consensus 189 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 260 (615)
+...+..+...|.. .+++++|...|++..+ ..+...+..+...|.. .+++++|++.|++..+.| +...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 44444455555554 5566666666655543 2344455555555555 566666666666665543 3333
Q ss_pred HHHHHHhccC----chhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CCcccHHHHH
Q 036661 261 VVSLLSSCVC----PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK----CGDIDSARFLFDGMCD-RTRVSWTAMI 331 (615)
Q Consensus 261 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~ll 331 (615)
+..+...+.. .++.+.|...++...+.| ++..+..|...|.. .++.++|.+.|++..+ .+...+..+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444444433 556666666666666554 44556667777766 6788888888877633 3556777777
Q ss_pred HHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc----cchhhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661 332 SGYAQ----KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDM 403 (615)
Q Consensus 332 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (615)
..|.. .+++++|...|++..+.| +...+..+...+.. .++.++|..+++...+.+ +...+..+...
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 77777 788888888888888765 44555555555554 678888888888887764 34556667777
Q ss_pred HHh----cCChHHHHHHHhcCCC-CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661 404 YSK----CGSIGDARELFYALPE-KTVVSWTTMIAGCALN-----GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA 473 (615)
Q Consensus 404 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 473 (615)
|.. .++.++|.+.|++..+ .++..+..+...|... +++++|+..+++..+.| +...+..+...|...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 776 7899999999987665 4667788888888887 89999999999998865 345666677777665
Q ss_pred C---chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHH----hC
Q 036661 474 G---FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCACKI----HR 542 (615)
Q Consensus 474 ~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 542 (615)
| ++++|.++|++..+. .+...+..+..+|.. .+++++|.++|++.....+...+..+...|.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 6 789999999998853 456778888999988 89999999999988744467788888888887 78
Q ss_pred ChhHHHHHHHHHhccCCC---CCCChHhHHHHHHc
Q 036661 543 NIEIGEYVAYRLFELEPH---SAAPYVEMANIYAL 574 (615)
Q Consensus 543 ~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 574 (615)
+.++|...++++.+.+|+ ++.....++.++..
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999999999854 67777777776654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=4.6e-19 Score=172.95 Aligned_cols=283 Identities=13% Similarity=0.014 Sum_probs=218.5
Q ss_pred HhcCCHHHHHH-HHhccC---CC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchh
Q 036661 304 SKCGDIDSARF-LFDGMC---DR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL 375 (615)
Q Consensus 304 ~~~~~~~~a~~-~~~~~~---~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 375 (615)
...|++++|.. .|++.. +. +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34567777777 777541 11 34567778888888888888888888888763 45667777888888888888
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChHHHHH---------------HHHHHHh
Q 036661 376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-TVVSWTT---------------MIAGCAL 437 (615)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~ 437 (615)
+.|...++.+.+.. +.+..++..+...|...|++++|.+.++++.. | +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888888765 55677888888888888888888888886554 1 2222211 1333348
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661 438 NGEFVEALDLFHQMMELDLRP-NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL 516 (615)
Q Consensus 438 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 516 (615)
.|++++|...++++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..++.++.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999863211 4788999999999999999999999999853 2345678999999999999999999
Q ss_pred HHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC-----------CCChHhHHHHHHccCChHHHHH
Q 036661 517 DFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS-----------AAPYVEMANIYALGGRWDGVAN 583 (615)
Q Consensus 517 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 583 (615)
+.++++. .+.+...+..++.++...|++++|...+++++++.|++ +.+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999986 44457788999999999999999999999999999887 7889999999999999999999
Q ss_pred HHHHHHh
Q 036661 584 LRTMMKR 590 (615)
Q Consensus 584 ~~~~~~~ 590 (615)
++++..+
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 9875443
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=8.2e-17 Score=164.85 Aligned_cols=414 Identities=8% Similarity=-0.016 Sum_probs=277.1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHH
Q 036661 154 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGC 233 (615)
Q Consensus 154 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 233 (615)
+...|..++.. ...|+++.|..+++.+++.. +.+...|..++..+.+.|++++|..+|++.....|+...|..++...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 56677777774 67788888888888888752 34566788888888888888888888888887777777777766533
Q ss_pred -hcCCChhhHHH----HHHHHHHC-CCCCC-HHhHHHHHHhcc---------CchhhhhhhHHHHHHHHhcCCCChhHHH
Q 036661 234 -TYGDKFDDSLN----FYRHMIYD-GFRPD-VTTVVSLLSSCV---------CPEALVQGRLVHSHGIHYGFDLDVSVIN 297 (615)
Q Consensus 234 -~~~~~~~~a~~----~~~~m~~~-~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 297 (615)
...|+.++|.+ +|++.+.. |..|+ ...|...+.... ..|+++.|..+|+..++.........+.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 34566666655 55555442 44443 334444443322 2567777777777776621111112222
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH------HCC---CCCCH--------H
Q 036661 298 TLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAME------AAG---EVPDL--------V 360 (615)
Q Consensus 298 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~~~--------~ 360 (615)
.........|. ..+..++. .+.+++..|..+++++. +.. ++|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 22111100110 01111111 02334556666555421 111 23431 2
Q ss_pred HHHHHHHhhcc----cchh----hHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-------cCChH-------HHHHHHh
Q 036661 361 TVLSMISGCGQ----SGAL----ELGKWFDNYACSGGLKDNVMVCNALIDMYSK-------CGSIG-------DARELFY 418 (615)
Q Consensus 361 ~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~ 418 (615)
.|...+..... .++. +.+..++++..... +.+..+|..++..+.+ .|+++ +|..+++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 33333322111 1222 36677888877754 5667888888888775 68887 8999999
Q ss_pred cCCC---C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCC
Q 036661 419 ALPE---K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-R-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV 492 (615)
Q Consensus 419 ~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 492 (615)
+... | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--- 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--- 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 7664 3 5778999999999999999999999999985 554 3 47888888888999999999999999853
Q ss_pred CCC-hhHHHHHHHH-HHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC----C
Q 036661 493 NPE-LNHYSCMADL-LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA----P 564 (615)
Q Consensus 493 ~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~ 564 (615)
+|. ...+...+.. +...|++++|..+|++.. ..| +...|..++..+.+.|+.++|..+++++++..|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 343 3334333322 346899999999999886 334 5678899999999999999999999999998887665 7
Q ss_pred hHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 565 YVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
|...+......|+.+.+..+.+++.+..+
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 77888888899999999999999887654
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.5e-18 Score=172.78 Aligned_cols=369 Identities=9% Similarity=-0.055 Sum_probs=191.9
Q ss_pred cchHHHHHHHHHccCCHHHHHHHHHhcccC----------CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCC------
Q 036661 190 VSVCNTWISAYAKCNDLKMAELVFRGIEEG----------LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDG------ 253 (615)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------ 253 (615)
...|+.+...+...|++++|++.|++..+. .....+|+.+...|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 446677777777777777777777654321 2234567777778888888888888777765421
Q ss_pred CCC-CHHhHHHHHHhc--cCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHH
Q 036661 254 FRP-DVTTVVSLLSSC--VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAM 330 (615)
Q Consensus 254 ~~p-~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 330 (615)
..+ ...++.....++ ...++++.|...|+...+.. |.++..+..+..++.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~------------------------- 184 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYR------------------------- 184 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH-------------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-------------------------
Confidence 011 122232222222 12334555555555555443 2222233322222111
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh----hcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 036661 331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISG----CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK 406 (615)
Q Consensus 331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (615)
+...++.++|++.+++..+.. +.+...+..+... ....++.+.|...++...... +.+..++..+...|..
T Consensus 185 ---l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 185 ---LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp ---HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred ---hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 222334444444444444331 1222222222211 122334444444444444433 3334444445555555
Q ss_pred cCChHHHHHHHhcCCC---CChHHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036661 407 CGSIGDARELFYALPE---KTVVSWTTMIAGCAL-------------------NGEFVEALDLFHQMMELDLRPNRVTFL 464 (615)
Q Consensus 407 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~p~~~~~~ 464 (615)
.|++++|...+++..+ .+..++..+..+|.. .+.++.|...+++..+.+ +.+...+.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 5555555555544332 122333333333221 234677888888888763 33445778
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCCCChh----HHHHHHH-HHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHH
Q 036661 465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN----HYSCMAD-LLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCAC 538 (615)
Q Consensus 465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 538 (615)
.+...+...|++++|...|+++.+. .|+.. .+..++. .+...|++++|++.+++.. ..|+....
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~------- 408 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK------- 408 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH-------
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH-------
Confidence 8889999999999999999998843 33322 2333443 3457899999999999876 66654332
Q ss_pred HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeEE
Q 036661 539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLV 602 (615)
Q Consensus 539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 602 (615)
.+....+.+++++.++.+|+++.+|..+|.+|...|++++|++.|++.++.+.......+|+
T Consensus 409 --~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 409 --EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred --HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 22345567788899999999999999999999999999999999999999888776677775
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=2.4e-16 Score=159.72 Aligned_cols=353 Identities=12% Similarity=0.070 Sum_probs=292.9
Q ss_pred CCCcchHHHHHHHHhc----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccC----chhhhhhhHHHHHHHHhcCCC
Q 036661 220 LRTVVSWNSIIGGCTY----GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVC----PEALVQGRLVHSHGIHYGFDL 291 (615)
Q Consensus 220 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 291 (615)
..+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.+.|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4466677777777777 899999999999998864 45566666666666 889999999999998875
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 036661 292 DVSVINTLISMYSK----CGDIDSARFLFDGMCDR-TRVSWTAMISGYAQ----KGDLDEALRLFFAMEAAGEVPDLVTV 362 (615)
Q Consensus 292 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 362 (615)
++..+..|...|.. .+++++|...|+..... +...+..+...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677788888988 88999999999987443 56678888888887 789999999999998875 56667
Q ss_pred HHHHHhhcc----cchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChHHHHHHHH
Q 036661 363 LSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK----CGSIGDARELFYALPE-KTVVSWTTMIA 433 (615)
Q Consensus 363 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~ 433 (615)
..+...+.. .++.++|..+++...+.+ +...+..+...|.. .+++++|.+.|++..+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777766 789999999999998865 45667778888876 7899999999998665 56778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc-----CchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661 434 GCAL----NGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA-----GFLEKGWGYFNLMTKVYQVNPELNHYSCMAD 504 (615)
Q Consensus 434 ~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 504 (615)
.|.. .+++++|+..|++..+.| +...+..+...|... +++++|...+++..+. .+...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8888 899999999999998764 455666777777776 8999999999999853 34566778888
Q ss_pred HHHhcC---ChHHHHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc---
Q 036661 505 LLGRKG---KLKEALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL--- 574 (615)
Q Consensus 505 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 574 (615)
+|.+.| ++++|+++|++.....+...+..+...+.. .+++++|...++++.+.. ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888867 889999999998744567788889999988 899999999999999864 57899999999998
Q ss_pred -cCChHHHHHHHHHHHhcCc
Q 036661 575 -GGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 575 -~g~~~~A~~~~~~~~~~~~ 593 (615)
.+++++|.+.|++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998874
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2e-18 Score=163.80 Aligned_cols=288 Identities=10% Similarity=0.025 Sum_probs=121.6
Q ss_pred ccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHH
Q 036661 202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVH 281 (615)
Q Consensus 202 ~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 281 (615)
+.|++++|.++++++. .| .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++
T Consensus 15 ~~~~ld~A~~fae~~~--~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN--EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC--Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4566777888877775 33 37778888888888888888887552 56677888888888888888888877
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036661 282 SHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVT 361 (615)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 361 (615)
...++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 766663 34466777788888888888887777753 56668888888888888888888888765 35
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCCh
Q 036661 362 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEF 441 (615)
Q Consensus 362 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 441 (615)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 777888888888888888887776 267778888888888888888877666554 3444444677788888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCChHHH
Q 036661 442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP------ELNHYSCMADLLGRKGKLKEA 515 (615)
Q Consensus 442 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A 515 (615)
++|+.+++...... +-....|.-|.-+|++- ++++..+.++...++.+++| +...|..++..|..-++++.|
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 88888888877653 33345666665555543 23333333333333335544 356788888888888888887
Q ss_pred HHHHHhC
Q 036661 516 LDFVQSM 522 (615)
Q Consensus 516 ~~~~~~~ 522 (615)
....-+-
T Consensus 302 ~~tm~~h 308 (449)
T 1b89_A 302 IITMMNH 308 (449)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 7766554
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.4e-18 Score=169.19 Aligned_cols=261 Identities=10% Similarity=-0.048 Sum_probs=212.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 036661 323 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALID 402 (615)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 402 (615)
+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888888999999999999999888764 4567788888888899999999999999888765 556788888999
Q ss_pred HHHhcCChHHHHHHHhcCCCCC-------------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 036661 403 MYSKCGSIGDARELFYALPEKT-------------VVSWTTMIAGCALNGEFVEALDLFHQMMELDLR-PNRVTFLAVLQ 468 (615)
Q Consensus 403 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 468 (615)
+|...|++++|...++++...+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999998876521 123344578889999999999999999997421 15788999999
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhH
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 546 (615)
.+...|++++|...++++.+. .+.+..++..++.+|...|++++|.+.++++. ..| +...+..++.++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999863 24457789999999999999999999999987 344 57788999999999999999
Q ss_pred HHHHHHHHhccCCC------------CCCChHhHHHHHHccCChHHHHHHHHH
Q 036661 547 GEYVAYRLFELEPH------------SAAPYVEMANIYALGGRWDGVANLRTM 587 (615)
Q Consensus 547 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 587 (615)
|...+++++++.|+ +...|..++.++...|+.+.|.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999887 367899999999999999999988765
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=5.3e-17 Score=151.36 Aligned_cols=271 Identities=10% Similarity=-0.044 Sum_probs=214.6
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhh
Q 036661 301 SMYSKCGDIDSARFLFDGMCDRTR----VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALE 376 (615)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 376 (615)
.-....|++..|+..++.....++ .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 345567999999999887654432 2445678899999999999986654 24677788888888999999999
Q ss_pred HHHHHHHHHHhcCC-CCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036661 377 LGKWFDNYACSGGL-KDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELD 455 (615)
Q Consensus 377 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 455 (615)
.|.+.++.+...+. +.+...+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999887764 44566777888999999999999999998 567889999999999999999999999999987
Q ss_pred CCCCHHHH---HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhh
Q 036661 456 LRPNRVTF---LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGI 530 (615)
Q Consensus 456 ~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 530 (615)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.++++. .+.+..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4554321 22334445668999999999999964 45677889999999999999999999999986 4446678
Q ss_pred HHHHHHHHHHhCChhH-HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661 531 WGTLLCACKIHRNIEI-GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR 585 (615)
Q Consensus 531 ~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 585 (615)
+..++..+...|+.++ +.++++++++++|+++.+. +...+.+.+++|..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 8889989989998865 6789999999999976543 4455566666665544
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=4.4e-18 Score=162.99 Aligned_cols=259 Identities=12% Similarity=-0.038 Sum_probs=180.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 036661 327 WTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK 406 (615)
Q Consensus 327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (615)
+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444444445555555555555444432 2233444444444555555555555555544433 3344445555555555
Q ss_pred cCChHHHHHHHhcCCC---CChHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661 407 CGSIGDARELFYALPE---KTVVSWTTM--------------IA-GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ 468 (615)
Q Consensus 407 ~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 468 (615)
.|++++|.+.++++.. .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555554332 111122221 22 3667789999999999999874 446788899999
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhH
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 546 (615)
.+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++++. .+.+...+..++..+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999853 23456788899999999999999999999986 44457788899999999999999
Q ss_pred HHHHHHHHhccCCC------------CCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 547 GEYVAYRLFELEPH------------SAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 547 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
|...++++++..|+ ++..+..++.+|...|++++|.+++++..+
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999 788999999999999999999999976544
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=3.9e-17 Score=154.97 Aligned_cols=285 Identities=13% Similarity=0.090 Sum_probs=100.9
Q ss_pred cCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 036661 101 KCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF 180 (615)
Q Consensus 101 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 180 (615)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 556677777777777554 3777888888888888888877754 25666777777777777778777777776
Q ss_pred HHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHh
Q 036661 181 GIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTT 260 (615)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 260 (615)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT---------TC
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 6663 3456677778888888888888776664 356667888888888888888888888766 35
Q ss_pred HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCh
Q 036661 261 VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDL 340 (615)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 340 (615)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 666666666666666666666665 256667777777777777777766655543 2333344566677777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc--cchhhHHHHHHHHHHhcCCCC------chHHHHHHHHHHHhcCChHH
Q 036661 341 DEALRLFFAMEAAGEVPDLVTVLSMISGCGQ--SGALELGKWFDNYACSGGLKD------NVMVCNALIDMYSKCGSIGD 412 (615)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 412 (615)
++|+.+++...... +.....|+-+...+++ .+++.+..+.|.. +.+++| ...+|..++..|...++++.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 77777777665443 3333444444333332 2333333333221 122222 23455566666666666666
Q ss_pred HHHHHhc
Q 036661 413 ARELFYA 419 (615)
Q Consensus 413 A~~~~~~ 419 (615)
|...+-+
T Consensus 301 A~~tm~~ 307 (449)
T 1b89_A 301 AIITMMN 307 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6554443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.1e-17 Score=155.99 Aligned_cols=248 Identities=8% Similarity=-0.016 Sum_probs=204.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 036661 331 ISGYAQKGDLDEALRLFFAMEAAGEVPDL--VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 408 (615)
Q Consensus 331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (615)
++.....|++..|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45566789999999998876543 3443 3456678899999999999876543 23667788889999999999
Q ss_pred ChHHHHHHHhcCC----CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661 409 SIGDARELFYALP----EK-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF 483 (615)
Q Consensus 409 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 483 (615)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999753 23 567788888999999999999999987 466788999999999999999999999
Q ss_pred HHHHHhhCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661 484 NLMTKVYQVNPELNH---YSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 484 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
+++.+. .|+... ...++..+...|++++|..+|+++. .+.+...+..++.++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999854 455321 1223345556699999999999987 55577788999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHccCChHH-HHHHHHHHHhcCc
Q 036661 559 PHSAAPYVEMANIYALGGRWDG-VANLRTMMKRNQV 593 (615)
Q Consensus 559 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 593 (615)
|+++.++..++.++...|++++ +.++++++.+..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999986 5789999887664
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.5e-15 Score=155.48 Aligned_cols=409 Identities=12% Similarity=0.043 Sum_probs=283.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHH
Q 036661 119 DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS 198 (615)
Q Consensus 119 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (615)
+...|..++. +.+.|++++|..+|+.+.+.. +-+...|...+..+.+.|+++.|..+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6778999998 478999999999999998742 3356678899999999999999999999999864 57677777775
Q ss_pred HH-HccCCHHHHHH----HHHhcccC----CCCcchHHHHHHHHhc---------CCChhhHHHHHHHHHHCCCCCCH--
Q 036661 199 AY-AKCNDLKMAEL----VFRGIEEG----LRTVVSWNSIIGGCTY---------GDKFDDSLNFYRHMIYDGFRPDV-- 258 (615)
Q Consensus 199 ~~-~~~~~~~~A~~----~~~~~~~~----~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~-- 258 (615)
.. ...|+.+.|.+ +|+..... .++...|...+..... .|+++.|..+|++.++. |..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 33 34677777665 66655321 3456778887776654 68899999999999873 332
Q ss_pred -HhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhc----------c---CCCC-
Q 036661 259 -TTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDG----------M---CDRT- 323 (615)
Q Consensus 259 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------~---~~~~- 323 (615)
..|..........|. ..+. .++. .+.++++.|..++.. . ..|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 222222111000000 0000 0110 012233344333332 1 1111
Q ss_pred -------cccHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc-------cchhh-----
Q 036661 324 -------RVSWTAMISGYAQK----GDL----DEALRLFFAMEAAGEVPDLVTVLSMISGCGQ-------SGALE----- 376 (615)
Q Consensus 324 -------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~----- 376 (615)
...|...+...... ++. ..+..+|++.... .+-+...|......+.. .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 12344443322221 232 3677888888775 24466677777666654 68876
Q ss_pred --HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Ch-HHHHHHHHHHHhcCChHHHHHHHHH
Q 036661 377 --LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-TV-VSWTTMIAGCALNGEFVEALDLFHQ 450 (615)
Q Consensus 377 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 450 (615)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.. | +. ..|..++..+.+.|++++|..+|++
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8899999888633356788899999999999999999999998664 3 33 4889999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHH-hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---C
Q 036661 451 MMELDLRPNRVTFLAVLQA-CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I---K 525 (615)
Q Consensus 451 ~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~ 525 (615)
..+.. +.+...+...... +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++. . .
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 99862 2233333332222 345899999999999998653 3457889999999999999999999999986 2 2
Q ss_pred CC--hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 526 SD--AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 526 p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22 337878888888899999999999999999885
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=8.9e-18 Score=163.82 Aligned_cols=257 Identities=12% Similarity=0.004 Sum_probs=204.8
Q ss_pred HHhcCChhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 036661 334 YAQKGDLDEALR-LFFAMEAAGE-VP--DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS 409 (615)
Q Consensus 334 ~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (615)
+...|++++|+. .+++...... .| +...+..+...+...|+++.|...++.+.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444578889988 8876554321 11 34557778888999999999999999999876 6678889999999999999
Q ss_pred hHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH---------------HHHHh
Q 036661 410 IGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLA---------------VLQAC 470 (615)
Q Consensus 410 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~---------------l~~~~ 470 (615)
+++|.+.++++.. .+..++..+...+...|++++|...++++.+.. |+. ..+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999997654 467899999999999999999999999999863 332 22211 23333
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661 471 THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 471 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
...|++++|..+++++.+.....++..++..++.+|.+.|++++|.+.++++. .+.+...+..++..+...|++++|+
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 48899999999999998642222247888999999999999999999999986 4445678999999999999999999
Q ss_pred HHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 549 YVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
..++++++++|+++.++..++.+|.+.|++++|.+.++++.+..+
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999987654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.1e-17 Score=162.79 Aligned_cols=233 Identities=11% Similarity=0.001 Sum_probs=197.3
Q ss_pred CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHH
Q 036661 358 DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAG 434 (615)
Q Consensus 358 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 434 (615)
+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|++++|.+.|+++.. .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457778888999999999999999999876 56788999999999999999999999998765 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661 435 CALNGEFVEALDLFHQMMELDLRPNRV-----------TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA 503 (615)
Q Consensus 435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 503 (615)
|...|++++|+..++++.+. .|+.. .+..+...+...|++++|..+++++.+.....++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999985 34422 233457789999999999999999996532222578899999
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHH
Q 036661 504 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGV 581 (615)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 581 (615)
.+|.+.|++++|.+.++++. .+.+..++..++.++...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999987 4456778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 036661 582 ANLRTMMKRNQV 593 (615)
Q Consensus 582 ~~~~~~~~~~~~ 593 (615)
.+.++++.+...
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999987554
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=8.6e-17 Score=143.25 Aligned_cols=195 Identities=13% Similarity=0.025 Sum_probs=158.6
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036661 391 KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVL 467 (615)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 467 (615)
+++...+..+...+.+.|++++|...|++... .++..+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56777888889999999999999999997655 467789999999999999999999999999873 33557888899
Q ss_pred HHhhcc-----------CchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 036661 468 QACTHA-----------GFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGT 533 (615)
Q Consensus 468 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 533 (615)
.++... |++++|+..+++..+. .| +...+..++.+|...|++++|+..|+++. . .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 999999 9999999999999853 45 46788889999999999999999999986 5 77788999
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
++.++...|++++|+..++++++++|+++.++..++.++...|++++|++.+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999987643
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=3.9e-15 Score=150.37 Aligned_cols=390 Identities=10% Similarity=-0.041 Sum_probs=225.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC-ccchHHHHHH
Q 036661 120 VASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA-DVSVCNTWIS 198 (615)
Q Consensus 120 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 198 (615)
...||.|..++...|++++|++.|++..+. ..........| ...+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 456777777777778888887777765431 00000000112 2346777888
Q ss_pred HHHccCCHHHHHHHHHhcccC--------CC-CcchHHHHHHHHh--cCCChhhHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 036661 199 AYAKCNDLKMAELVFRGIEEG--------LR-TVVSWNSIIGGCT--YGDKFDDSLNFYRHMIYDGFRPDV-TTVVSLLS 266 (615)
Q Consensus 199 ~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~ 266 (615)
+|...|++++|...++++... .+ ...++.....++. ..+++++|++.|++..+.. |+. ..+..+..
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~ 180 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAI 180 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 888888888888887765432 11 2334554444444 4567999999999998854 543 34444443
Q ss_pred hc---cCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcc---CCCCcccHHHHHHHHHh
Q 036661 267 SC---VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK----CGDIDSARFLFDGM---CDRTRVSWTAMISGYAQ 336 (615)
Q Consensus 267 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~ 336 (615)
++ ...++.+.|...++...+.. +.+..++..+...+.. .++.++|.+.++.. .+.+...+..+...|..
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 33 34456677888888887765 4455556655555544 46678888888776 34456678888899999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 036661 337 KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL 416 (615)
Q Consensus 337 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 416 (615)
.|++++|+..+++..+.. +-+..++..+...+...+..... .. . ..........+..+.|...
T Consensus 260 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHHHH
Confidence 999999999999888753 33445555554444322111100 00 0 0000111112235667777
Q ss_pred HhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HhhccCchHHHHHHHHHHHHhh
Q 036661 417 FYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV--TFLAVLQ-ACTHAGFLEKGWGYFNLMTKVY 490 (615)
Q Consensus 417 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~ 490 (615)
++.... .+..++..+...+...|++++|+..|++..+....|... .+..+.. .....|++++|+..|++..
T Consensus 323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal--- 399 (472)
T 4g1t_A 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV--- 399 (472)
T ss_dssp HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---
T ss_pred HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence 665543 455678889999999999999999999999874333221 2333332 3457799999999999988
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661 491 QVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 491 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 568 (615)
.+.|+....... ...+.+++++.. .+.+..++..++..+...|++++|++.|++++++.|.+|.++..+
T Consensus 400 ~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 400 KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 445664332222 223344444443 344677899999999999999999999999999999998887766
Q ss_pred H
Q 036661 569 A 569 (615)
Q Consensus 569 ~ 569 (615)
|
T Consensus 471 G 471 (472)
T 4g1t_A 471 G 471 (472)
T ss_dssp -
T ss_pred C
Confidence 5
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.6e-16 Score=151.96 Aligned_cols=258 Identities=9% Similarity=0.017 Sum_probs=137.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccch
Q 036661 298 TLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGA 374 (615)
Q Consensus 298 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 374 (615)
.+...+...|++++|..+|+++ .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 3334444444444444444443 11233344444444444444444444444444432 2233444444444444444
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHH--------------HH-HHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHH
Q 036661 375 LELGKWFDNYACSGGLKDNVMVCNAL--------------ID-MYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCA 436 (615)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 436 (615)
++.|...++.+.+.. +.+...+..+ .. .+...|++++|.+.++++.. .+...+..+...+.
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 444444444444322 1111111111 11 24555566666666655433 24556666666667
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL 516 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 516 (615)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++.++.+.|++++|.
T Consensus 184 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 7777777777777766652 334556666666777777777777777776642 1233556666777777777777777
Q ss_pred HHHHhCC-CCC-------------ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 517 DFVQSMP-IKS-------------DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 517 ~~~~~~~-~~p-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
+.++++. ..| +...+..+..++...|++++|...++++++..|+
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 7776654 222 2446666777777777777777777766655443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.5e-16 Score=141.39 Aligned_cols=216 Identities=10% Similarity=-0.001 Sum_probs=157.8
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--C----C----hHHHHHHHH
Q 036661 364 SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K----T----VVSWTTMIA 433 (615)
Q Consensus 364 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~~ 433 (615)
.+...+...|+++.|..+++.+.+.. .+...+..+..++...|++++|.+.++++.. | + ..+|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 33344444444444444444444433 3444455555555555555555555554433 1 1 467778888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 036661 434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLK 513 (615)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (615)
.+...|++++|+..++++.+. .|+. ..+...|++++|...++++... .+.+...+..++.++...|+++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence 888889999999999888885 4553 3355567888999999888742 2233567778889999999999
Q ss_pred HHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 514 EALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 514 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
+|.+.++++. .+.+...+..++.++...|++++|+..++++++.+|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999998886 44456788888899999999999999999999999999999999999999999999999999998775
Q ss_pred C
Q 036661 592 Q 592 (615)
Q Consensus 592 ~ 592 (615)
.
T Consensus 237 ~ 237 (258)
T 3uq3_A 237 D 237 (258)
T ss_dssp H
T ss_pred C
Confidence 5
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.5e-15 Score=139.73 Aligned_cols=233 Identities=11% Similarity=-0.039 Sum_probs=174.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCC--CCc----hHHHHH
Q 036661 326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDN----VMVCNA 399 (615)
Q Consensus 326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 399 (615)
.+..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...++.+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 35556666666677777777777666655 5566666666667777777777777766655321 111 466777
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCch
Q 036661 400 LIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFL 476 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~ 476 (615)
+...+...|++++|.+.++++.. ++ ...+...|++++|...++++... .|+ ...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 78888888888888888877654 33 23456678889999999999886 444 45788888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHH
Q 036661 477 EKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRL 554 (615)
Q Consensus 477 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 554 (615)
++|...++++.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+...+..++.++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999853 23456788889999999999999999999886 4445678888999999999999999999999
Q ss_pred hccC------CCCCCChHhHHHH
Q 036661 555 FELE------PHSAAPYVEMANI 571 (615)
Q Consensus 555 ~~~~------p~~~~~~~~l~~~ 571 (615)
++++ |++...+..+..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhChhhcCCCchHHHHHHHHHh
Confidence 9998 7766666655443
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=5e-15 Score=137.67 Aligned_cols=241 Identities=10% Similarity=-0.108 Sum_probs=187.2
Q ss_pred hcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 036661 336 QKGDLDEALRLFFAMEAAGEV---PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGD 412 (615)
Q Consensus 336 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (615)
..|++++|+..++++.+.... .+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346778888888888775321 234567777778888888888888888887765 5567788888899999999999
Q ss_pred HHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 036661 413 ARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKV 489 (615)
Q Consensus 413 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 489 (615)
|.+.++++.. .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999987665 45778999999999999999999999999986 455544444555567779999999999888753
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 490 YQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 490 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
.+++... ..++..+...++.++|.+.+++.. ..|. ...+..++..+...|++++|...++++++.+|++
T Consensus 174 --~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 174 --SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp --SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred --CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 2334333 347788888899999999999876 3332 4678888999999999999999999999999976
Q ss_pred ChHhHHHHHHccCChHHHHHHH
Q 036661 564 PYVEMANIYALGGRWDGVANLR 585 (615)
Q Consensus 564 ~~~~l~~~~~~~g~~~~A~~~~ 585 (615)
+...+.++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 445577899999999998887
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=9.2e-15 Score=135.66 Aligned_cols=246 Identities=10% Similarity=-0.036 Sum_probs=125.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHhhc
Q 036661 296 INTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPD--LVTVLSMISGCG 370 (615)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 370 (615)
+......+...|++++|...|+.. .+.+...+..+...+...|++++|+..+++..+.+..|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 344555556666666666666554 222333555566666666666666666666555221111 122444444444
Q ss_pred ccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661 371 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQ 450 (615)
Q Consensus 371 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 450 (615)
..|+++.|...++...+.. +.+. .+|..+...|...|++++|+..+++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~-------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRL-------------------------------DMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCT-------------------------------HHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cccH-------------------------------HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555444432 2233 3444444455555555555555554
Q ss_pred HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC----
Q 036661 451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGK---LKEALDFVQSMP---- 523 (615)
Q Consensus 451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~---- 523 (615)
..+.. +.+...+..+...+...+++++|...++++.+. .+.+...+..++.++...|+ +++|...++++.
T Consensus 134 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 134 QIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp GCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 44431 222333433431222223555555555555432 11123344444555555454 444555444443
Q ss_pred CCCC------hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661 524 IKSD------AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG 576 (615)
Q Consensus 524 ~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 576 (615)
..|+ ...+..++..+...|++++|...++++++++|+++.++..+..+....+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1122 1356667788888999999999999999999998888887777665544
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=6.3e-14 Score=139.55 Aligned_cols=376 Identities=11% Similarity=0.024 Sum_probs=180.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCH---HHHHHHHHhcccCCCCcchHHHHHHHHhcCC-
Q 036661 162 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDL---KMAELVFRGIEEGLRTVVSWNSIIGGCTYGD- 237 (615)
Q Consensus 162 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~- 237 (615)
...+.+.|++++|.++++...+.| +...+..+...|...|+. ++|...|++..+. +...+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCC
Confidence 334445566666666666666554 344455566666666776 7888888877743 5566666666444444
Q ss_pred ----ChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhh---hhHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--
Q 036661 238 ----KFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ---GRLVHSHGIHYGFDLDVSVINTLISMYSKCGD-- 308 (615)
Q Consensus 238 ----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 308 (615)
++++|+..|++..+.|... .+..+...+...+..+. +...+......| ++.....+...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 6778888888887765422 34444444444333332 333333333333 23445556666666553
Q ss_pred --HHHHHHHHhccCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHH
Q 036661 309 --IDSARFLFDGMCDRTRVSWTAMISGYAQKG---DLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDN 383 (615)
Q Consensus 309 --~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 383 (615)
.+.+..+++.....++..+..+...|...| +.++|+..|++..+.| .++...+..+...|....
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~---------- 227 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT---------- 227 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG----------
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC----------
Confidence 334444455445555556666666666666 6666666666666655 333333333333332220
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCH
Q 036661 384 YACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAG-C--ALNGEFVEALDLFHQMMELDLRPNR 460 (615)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~ 460 (615)
...+++++|.+.|++....++..+..+... + ...+++++|+..|++..+.| +.
T Consensus 228 ---------------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 228 ---------------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp ---------------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred ---------------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 000344444444444332233344444444 2 23556666666666666554 34
Q ss_pred HHHHHHHHHhhccC-----chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhH
Q 036661 461 VTFLAVLQACTHAG-----FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIW 531 (615)
Q Consensus 461 ~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~ 531 (615)
..+..|...|. .| ++++|..+|++.. +-+......|+.+|.. ..++++|..+|++....-+....
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 44444554444 33 6666666666544 2334445555555554 23666666666665433334444
Q ss_pred HHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHH--ccCChHHHHHHHHHHHhc
Q 036661 532 GTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA--LGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 532 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 591 (615)
..+...|.. ..|.++|...++++.+..+. .....+..+.. ..++..+|.+..++..+.
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 455555543 34667777777777665543 23333333332 223455666666655443
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=162.56 Aligned_cols=149 Identities=12% Similarity=0.092 Sum_probs=122.3
Q ss_pred hHHHHHHHHHhhcCCChhHHHHhhccCC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH
Q 036661 89 IFVQTTMVDMYAKCDRLDCAYKLFDKMP-------DRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL 161 (615)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 161 (615)
..+||++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC---CCCcchHHHHHHHHhcCC
Q 036661 162 TQAAIHAKHL-SLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG---LRTVVSWNSIIGGCTYGD 237 (615)
Q Consensus 162 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~~ 237 (615)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++...++...+... .|...+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999988776654444333333222211 112445555666677655
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.8e-14 Score=131.94 Aligned_cols=198 Identities=10% Similarity=-0.052 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661 394 VMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC 470 (615)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 470 (615)
...+..+...+...|++++|.+.++++.. .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44566667777777777777777776543 356677888888888888888888888888763 34567788888888
Q ss_pred hccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHH
Q 036661 471 THAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIG 547 (615)
Q Consensus 471 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A 547 (615)
...|++++|.++++++.+ .+..| +...+..++.++...|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999888875 12344 35667778888888999999999888876 333566788888888899999999
Q ss_pred HHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 548 EYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 548 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
...++++++..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999998888888999999999999999999998887654
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=2e-14 Score=124.43 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=146.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661 424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA 503 (615)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 503 (615)
+...|..+...|...|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+..+... .+.+...+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 56788899999999999999999999999873 335578888999999999999999999998853 233456777788
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHH
Q 036661 504 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGV 581 (615)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 581 (615)
..+...++++.|.+.+++.. .+.+...+..++..+...|++++|++.++++++++|+++.+|..+|.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999876 4445678888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 036661 582 ANLRTMMKRNQV 593 (615)
Q Consensus 582 ~~~~~~~~~~~~ 593 (615)
++.+++..+..+
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 999999987654
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=5.9e-15 Score=134.35 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661 394 VMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC 470 (615)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 470 (615)
...+..+...+...|++++|...|+++.. .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 33444555555566666666665555433 244566666666667777777777777766652 33455666666677
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661 471 THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 471 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
...|++++|..+++++.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+...+..++..+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777776643 23345566666777777777777777776665 3334556666677777777777777
Q ss_pred HHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 549 YVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
..++++++..|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 777777777777777777777777777777777777777766543
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=1e-13 Score=128.61 Aligned_cols=189 Identities=11% Similarity=-0.012 Sum_probs=130.2
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHhcCCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036661 396 VCNALIDMYSK----CGSIGDARELFYALPE-KTVVSWTTMIAGCAL----NGEFVEALDLFHQMMELDLRPNRVTFLAV 466 (615)
Q Consensus 396 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 466 (615)
.+..+...|.. .+++++|.+.|++..+ .++..+..+...|.. .+++++|+..+++..+.+ +...+..+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 116 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASL 116 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHH
Confidence 34444444555 5555555555554433 345556666666666 777777777777777754 55666667
Q ss_pred HHHhhc----cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036661 467 LQACTH----AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCAC 538 (615)
Q Consensus 467 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 538 (615)
...|.. .+++++|...|++..+. + +...+..++.+|.. .+++++|.+.+++.....+...+..+...+
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 192 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777776 77778888777777743 2 44556667777776 778888888877765333456667777777
Q ss_pred HH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc----cCChHHHHHHHHHHHhcCc
Q 036661 539 KI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL----GGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 539 ~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 593 (615)
.. .+++++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.+.
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77 7888888888888887766 5677888888888 8888888888888877664
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3e-14 Score=127.86 Aligned_cols=200 Identities=10% Similarity=-0.026 Sum_probs=160.1
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661 392 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ 468 (615)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 468 (615)
.+...+..+...+...|++++|.+.++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3455667777778888888888888776544 356678888888888899999999999888863 445678888888
Q ss_pred Hhhcc-CchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCCh
Q 036661 469 ACTHA-GFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNI 544 (615)
Q Consensus 469 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 544 (615)
.+... |++++|...++++.+ .+..|+ ...+..++.++...|++++|.+.++++. .+.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88889 999999999998885 223343 5677788888999999999999998876 333466788888888999999
Q ss_pred hHHHHHHHHHhccCC-CCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 545 EIGEYVAYRLFELEP-HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 545 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
++|...++++++..| +++..+..++.++...|++++|..+++.+.+..+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 999999999999999 8888888888888999999999999988876543
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=8.8e-15 Score=133.20 Aligned_cols=213 Identities=12% Similarity=0.060 Sum_probs=152.5
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHH
Q 036661 360 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCA 436 (615)
Q Consensus 360 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 436 (615)
..+..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|.+.++++.. .+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344444555555666666666666655533 34556666677777777777777777776543 35677888888899
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661 437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL 516 (615)
Q Consensus 437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 516 (615)
..|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++.++.+.|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998864 456678888889999999999999999998853 2345678888999999999999999
Q ss_pred HHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661 517 DFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG 576 (615)
Q Consensus 517 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 576 (615)
+.++++. .+.+...+..++.++...|++++|...++++++.+|+++..+..++.+....|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999886 44456788889999999999999999999999999999888887766654443
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=2.8e-14 Score=142.05 Aligned_cols=345 Identities=11% Similarity=-0.005 Sum_probs=229.4
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhh---hhhhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 036661 228 SIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL---VQGRLVHSHGIHYGFDLDVSVINTLISMYS 304 (615)
Q Consensus 228 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (615)
.+...+.+.|++++|+++|++..+.|. ...+..+...+...|+. ++|...++...+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677888999999999999988763 23334444455567777 8999999888855 4445666666555
Q ss_pred hcC-----CHHHHHHHHhccCCC-CcccHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchh
Q 036661 305 KCG-----DIDSARFLFDGMCDR-TRVSWTAMISGYAQKGDLD---EALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL 375 (615)
Q Consensus 305 ~~~-----~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 375 (615)
..+ +.++|...|++...+ +...+..+...|...+..+ ++.+.+......|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 554 788999999887443 5557888888888766544 45555555555553 23444555566666655
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC---ChHHHHHHHhcCCC---CChHHHHHHHHHHHhc----CChHHHH
Q 036661 376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG---SIGDARELFYALPE---KTVVSWTTMIAGCALN----GEFVEAL 445 (615)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~ 445 (615)
+.+......+.+.-...++..+..|...|...| +.++|.+.|++..+ ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 544444333333222333447788888899999 89999999987654 3444446777777654 7999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-h--hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-----ChHHHHH
Q 036661 446 DLFHQMMELDLRPNRVTFLAVLQA-C--THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG-----KLKEALD 517 (615)
Q Consensus 446 ~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~ 517 (615)
..|++.. .| +...+..+... + ...+++++|..+|++..+. + +...+..|+.+|. .| ++++|++
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 43 34455555555 3 5688999999999998853 3 5667777888887 55 9999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc----cCChHHHHHHHHHHH
Q 036661 518 FVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL----GGRWDGVANLRTMMK 589 (615)
Q Consensus 518 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 589 (615)
+|++.. +-+......+...|.. ..++++|...++++.+ +.++..+..|+.+|.. ..++++|...+++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999999 6667778888877765 3499999999999987 4568899999999985 458999999999999
Q ss_pred hcCcc
Q 036661 590 RNQVK 594 (615)
Q Consensus 590 ~~~~~ 594 (615)
+.|..
T Consensus 386 ~~g~~ 390 (452)
T 3e4b_A 386 AQDTP 390 (452)
T ss_dssp TTCCH
T ss_pred HCCCH
Confidence 88753
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=6.6e-14 Score=134.82 Aligned_cols=244 Identities=10% Similarity=0.021 Sum_probs=185.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccch-hhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 036661 326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGA-LELGKWFDNYACSGGLKDNVMVCNALIDMY 404 (615)
Q Consensus 326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (615)
.|..+...+.+.|++++|+..+++.+... +-+...|..+...+...|+ ++.|...++.+.+.. +.+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 56667777777888888888888877653 3455666677777777775 888888888777765 55677788888888
Q ss_pred HhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCchHHH-
Q 036661 405 SKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH-AGFLEKG- 479 (615)
Q Consensus 405 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a- 479 (615)
...|++++|+..|+++.. .+...|..+..++...|++++|+..++++++.+ +-+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 888888888888887665 466788888889999999999999999999873 3356788888888888 5665777
Q ss_pred ----HHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-ChhhHHHHHHHHHHhC--------C
Q 036661 480 ----WGYFNLMTKVYQVNPE-LNHYSCMADLLGRKG--KLKEALDFVQSMPIKS-DAGIWGTLLCACKIHR--------N 543 (615)
Q Consensus 480 ----~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~--------~ 543 (615)
+..++++... .|+ ...|..+..++...| ++++|++.++++...| +...+..++..+.+.| +
T Consensus 256 ~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4778877742 444 567888888888888 6889988888775334 4557777888887764 2
Q ss_pred -hhHHHHHHHHH-hccCCCCCCChHhHHHHHHcc
Q 036661 544 -IEIGEYVAYRL-FELEPHSAAPYVEMANIYALG 575 (615)
Q Consensus 544 -~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 575 (615)
.++|+++++++ .+++|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58899999999 899999888888888776543
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=3.4e-14 Score=136.79 Aligned_cols=229 Identities=10% Similarity=0.025 Sum_probs=194.5
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC-hHHHHHHHhcCCC---CChHHHHHHHHHH
Q 036661 360 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS-IGDARELFYALPE---KTVVSWTTMIAGC 435 (615)
Q Consensus 360 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 435 (615)
..+..+...+...|+++.|...++.+++.. +.+...|+.+..++...|+ +++|+..|+++.. .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456666777888899999999999999876 6678889999999999997 9999999998775 4678999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh-cCChHH
Q 036661 436 ALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR-KGKLKE 514 (615)
Q Consensus 436 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 514 (615)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+. -+-+...|..++.++.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999973 445679999999999999999999999999953 23346789999999999 666588
Q ss_pred H-----HHHHHhCC-CCC-ChhhHHHHHHHHHHhC--ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC--------C
Q 036661 515 A-----LDFVQSMP-IKS-DAGIWGTLLCACKIHR--NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG--------R 577 (615)
Q Consensus 515 A-----~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~ 577 (615)
| ++.++++. ..| +...|..+...+...| ++++|++.++++ +.+|+++.++..++++|.+.| +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 8 47888876 444 5668888888888877 689999999998 999999999999999999975 3
Q ss_pred -hHHHHHHHHHH-HhcCc
Q 036661 578 -WDGVANLRTMM-KRNQV 593 (615)
Q Consensus 578 -~~~A~~~~~~~-~~~~~ 593 (615)
+++|+++++++ .+..+
T Consensus 333 ~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 59999999998 55543
No 51
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=155.19 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcc-------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 036661 292 DVSVINTLISMYSKCGDIDSARFLFDGM-------CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLS 364 (615)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 364 (615)
-..+|++||++|++.|++++|.++|+.| ..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3457999999999999999999999665 468999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchh-hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661 365 MISGCGQSGAL-ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 420 (615)
Q Consensus 365 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 420 (615)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999874 788999999999999999999999887777665555554444333
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.9e-13 Score=125.11 Aligned_cols=197 Identities=15% Similarity=0.008 Sum_probs=136.1
Q ss_pred HhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHH
Q 036661 367 SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVE 443 (615)
Q Consensus 367 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 443 (615)
..+...|+++.|...++.+.+.. +.+...+..+...|...|++++|.+.++++.. .+...+..+...+...|++++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 33333444444444444443332 23344555555566666666666666655433 345667777778888888888
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036661 444 ALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSM 522 (615)
Q Consensus 444 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (615)
|.++++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|...++++
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888877333554 357777788888888899998888888753 2334667788888899999999999998887
Q ss_pred C--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661 523 P--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV 566 (615)
Q Consensus 523 ~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 566 (615)
. .+.+...+..+...+...|++++|.+.++++++..|+++....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 5 3345567777888888999999999999999999998765443
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=9e-13 Score=122.12 Aligned_cols=240 Identities=11% Similarity=-0.009 Sum_probs=169.0
Q ss_pred HHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcc----cHHHHH
Q 036661 258 VTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD--RTRV----SWTAMI 331 (615)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~ll 331 (615)
...+......+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...++.... ++.. .|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566777889999999999999998875 34566788899999999999999999998743 3333 388899
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661 332 SGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 411 (615)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (615)
..+...|++++|+..|++..+.. +.+...+..+.. .|...|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~-----------------------------------~~~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGS-----------------------------------YFYNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH-----------------------------------HHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHH-----------------------------------HHHHccCHH
Confidence 99999999999999999998853 223344444443 445556666
Q ss_pred HHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc---hHHHHHHHHH
Q 036661 412 DARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF---LEKGWGYFNL 485 (615)
Q Consensus 412 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 485 (615)
+|.+.+++... .+...|..+...+...+++++|...++++.+.. +.+...+..+..++...|+ +++|...+++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 66666665544 244556666633334458888888888888763 3335667777777777777 7778888888
Q ss_pred HHHhhCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHH
Q 036661 486 MTKVYQVNPEL------NHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLL 535 (615)
Q Consensus 486 ~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~ 535 (615)
+.+...-.|+. ..+..++..|...|++++|.+.++++. ..|+ ...+..+.
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 77554333442 467778888888888999888888876 4443 33444333
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=4.3e-14 Score=131.30 Aligned_cols=222 Identities=13% Similarity=-0.045 Sum_probs=183.6
Q ss_pred hhcccchhhHHHHHHHHHHhcCC---CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCCh
Q 036661 368 GCGQSGALELGKWFDNYACSGGL---KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEF 441 (615)
Q Consensus 368 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 441 (615)
.....|+++.|...++.+.+... +.+..++..+...+...|++++|...|+++.. .+..+|..+...+...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 34566899999999999988632 22467888899999999999999999998764 4678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036661 442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQS 521 (615)
Q Consensus 442 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (615)
++|+..++++.+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999973 345678999999999999999999999999853 45555445555566778999999999977
Q ss_pred CC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 522 MP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 522 ~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.. ..|+......++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.++++.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 170 HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 65 3333333344777778888999999999999988774 368899999999999999999999999988764
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=2.6e-14 Score=141.50 Aligned_cols=260 Identities=10% Similarity=0.018 Sum_probs=165.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHhhcccchhhHHHHHHHHHHhc----C-CCCchHHHHHH
Q 036661 330 MISGYAQKGDLDEALRLFFAMEAAGEVPDL----VTVLSMISGCGQSGALELGKWFDNYACSG----G-LKDNVMVCNAL 400 (615)
Q Consensus 330 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 400 (615)
+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|+++.|...++...+. + .+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344444555555555555544432 1111 23444444455555555555555544331 1 11223455556
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---------CChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHc
Q 036661 401 IDMYSKCGSIGDARELFYALPE---------KTVVSWTTMIAGCALNGE-----------------FVEALDLFHQMMEL 454 (615)
Q Consensus 401 ~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~ 454 (615)
...|...|++++|...+++... ....++..+...|...|+ +++|+..+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6666666676666666665433 122466677777777777 77887777776542
Q ss_pred ----CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 036661 455 ----DLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-I 524 (615)
Q Consensus 455 ----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 524 (615)
+-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..++.+|...|++++|.+.+++.. .
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11122 236777778888888999998888887653221122 2367778888889999999988888765 1
Q ss_pred ---CC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 525 ---KS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 525 ---~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.. ...++..++..+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+++++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 13466777888888999999999999998876543 34788899999999999999999988865
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=2e-14 Score=144.02 Aligned_cols=209 Identities=9% Similarity=-0.004 Sum_probs=175.2
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh-HHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661 375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI-GDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQ 450 (615)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 450 (615)
++.+...++...... +.+...+..+...+...|++ ++|.+.|++..+ .+...|..+..+|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444455555444332 45667777888888888888 888888887654 3567899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhhcc---------CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc--------CChH
Q 036661 451 MMELDLRPNRVTFLAVLQACTHA---------GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK--------GKLK 513 (615)
Q Consensus 451 ~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 513 (615)
..+. .|+...+..+..++... |++++|+..++++.+. .+.+...|..++.+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9986 67778888999999999 9999999999999853 233467888999999998 9999
Q ss_pred HHHHHHHhCC-CCC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 514 EALDFVQSMP-IKS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 514 ~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
+|++.|+++. ..| +...+..++.++...|++++|++.++++++++|+++.++..++.++...|++++|++.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999987 445 67789999999999999999999999999999999999999999999999999999866544
No 57
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=1.7e-13 Score=121.90 Aligned_cols=190 Identities=16% Similarity=0.031 Sum_probs=73.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 036661 326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 405 (615)
Q Consensus 326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (615)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33334444444444444444444444321 2233333333333444444444444444433332 223333334444443
Q ss_pred hc-----------CChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 036661 406 KC-----------GSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACT 471 (615)
Q Consensus 406 ~~-----------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 471 (615)
.. |++++|...+++..+ .+...|..+..++...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 33 444444444443322 123344444444444445555555555444443 33444444444444
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036661 472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQS 521 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (615)
..|++++|+..|+++.+. .+.+...+..++.++.+.|++++|.+.+++
T Consensus 163 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 455555555555444421 112233344444444444444444444443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=5.7e-14 Score=138.70 Aligned_cols=295 Identities=12% Similarity=0.049 Sum_probs=182.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhccC--CC-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-C
Q 036661 291 LDVSVINTLISMYSKCGDIDSARFLFDGMC--DR-T----RVSWTAMISGYAQKGDLDEALRLFFAMEAA----GEVP-D 358 (615)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 358 (615)
.....+......+...|++++|...|++.. .| + ...+..+...+...|++++|...+++.... +..| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344556667778888888888888887762 22 2 235677777888888888888888876442 2122 2
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHhc----CC-CCchHHHHHHHHHHHhcCC--------------------hHHH
Q 036661 359 LVTVLSMISGCGQSGALELGKWFDNYACSG----GL-KDNVMVCNALIDMYSKCGS--------------------IGDA 413 (615)
Q Consensus 359 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A 413 (615)
...+..+...+...|+++.|...++...+. +. .....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 345566667777778888888777776542 10 1113466667777777777 7777
Q ss_pred HHHHhcCCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCchHHH
Q 036661 414 RELFYALPE-----K----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDL-RPN----RVTFLAVLQACTHAGFLEKG 479 (615)
Q Consensus 414 ~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a 479 (615)
.+.+++... . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 666655432 1 123566677777777777777777777665210 111 12566666677777777777
Q ss_pred HHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHHhCChhHH
Q 036661 480 WGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHRNIEIG 547 (615)
Q Consensus 480 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A 547 (615)
...+++......-.++ ..++..++.+|...|++++|.+.+++.. ..++ ..++..++..+...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777776543211111 3456667777777777777777776654 1111 33556666777777777777
Q ss_pred HHHHHHHhccCCCCC------CChHhHHHHHHccCChHHHHHHH
Q 036661 548 EYVAYRLFELEPHSA------APYVEMANIYALGGRWDGVANLR 585 (615)
Q Consensus 548 ~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~ 585 (615)
...+++++++.+... .++..++.+|...|+...+...+
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 777777777777652 24555666666666666544444
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.2e-12 Score=121.25 Aligned_cols=225 Identities=12% Similarity=0.041 Sum_probs=170.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc----cchhhHHHHHHHHHHhcCCCCchHHHHH
Q 036661 324 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNA 399 (615)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (615)
..++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 345555666666667777777777766662 234455555566666 677777777777776654 5566667
Q ss_pred HHHHHHh----cCChHHHHHHHhcCCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661 400 LIDMYSK----CGSIGDARELFYALPE-KTVVSWTTMIAGCAL----NGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC 470 (615)
Q Consensus 400 l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 470 (615)
+...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|+..+++..+.+ +...+..+...|
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 7777777 7888888888876554 466778888888888 899999999999999865 556677777777
Q ss_pred hc----cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHH--
Q 036661 471 TH----AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCACKI-- 540 (615)
Q Consensus 471 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-- 540 (615)
.. .+++++|...|++..+. .+...+..++.+|.. .+++++|++.+++.....+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 77 89999999999998853 345677788899999 99999999999987622336677888888888
Q ss_pred --hCChhHHHHHHHHHhccCCCC
Q 036661 541 --HRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 541 --~~~~~~A~~~~~~~~~~~p~~ 561 (615)
.+++++|...++++++.+|++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999998863
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=7.2e-14 Score=133.99 Aligned_cols=261 Identities=11% Similarity=0.044 Sum_probs=171.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHhhcccchhhHHHHHHHHHHhc----CC-CCchHHHHHHH
Q 036661 331 ISGYAQKGDLDEALRLFFAMEAAGEVPD----LVTVLSMISGCGQSGALELGKWFDNYACSG----GL-KDNVMVCNALI 401 (615)
Q Consensus 331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 401 (615)
...+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...++...+. +. +....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334445555555555555554432 111 133444444555555555555555544321 11 11234556666
Q ss_pred HHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 036661 402 DMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGE--------------------FVEALDLFHQMM 452 (615)
Q Consensus 402 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 452 (615)
..+...|++++|...+++... ++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 667777777777776665433 11 2366777777777787 888888877765
Q ss_pred Hc----CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 453 EL----DLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 453 ~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
.. +-.|. ...+..+...+...|++++|...+++..+...-.++ ...+..++.++...|++++|.+.+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11122 246777788888999999999999888743221122 2367788899999999999999998875
Q ss_pred ----CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 524 ----IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 524 ----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
..++ ..++..++..+...|++++|...+++++++.|.. ..++..++.+|...|++++|.+.+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1111 3466778888999999999999999998876653 3378889999999999999999999987
Q ss_pred hcC
Q 036661 590 RNQ 592 (615)
Q Consensus 590 ~~~ 592 (615)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 654
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.5e-13 Score=120.80 Aligned_cols=205 Identities=11% Similarity=-0.043 Sum_probs=145.3
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHh
Q 036661 361 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCAL 437 (615)
Q Consensus 361 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 437 (615)
.+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.++++.. .+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33444444444455555555555444433 33344556666666666666666666665443 355677778888888
Q ss_pred c-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 036661 438 N-GEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEA 515 (615)
Q Consensus 438 ~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 515 (615)
. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++.++.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 889999999888887333454 457788888889999999999999988853 233467788888999999999999
Q ss_pred HHHHHhCC--CC-CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661 516 LDFVQSMP--IK-SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 516 ~~~~~~~~--~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 568 (615)
.+.++++. .+ .+...+..+...+...|+.+.|..+++.+.+.+|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99998876 33 4556677777777889999999999999999999877655443
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=5.1e-14 Score=139.09 Aligned_cols=289 Identities=13% Similarity=0.010 Sum_probs=196.7
Q ss_pred CCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhccCC-----C----
Q 036661 256 PDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLD----VSVINTLISMYSKCGDIDSARFLFDGMCD-----R---- 322 (615)
Q Consensus 256 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~---- 322 (615)
+....+......+...|+++.|...++.+.+.+ +.+ ..++..+...+...|++++|...+++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 444556666677788888888888888888774 223 24677788888888888888888876511 1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHhhcccch--------------------hhH
Q 036661 323 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE-VPD----LVTVLSMISGCGQSGA--------------------LEL 377 (615)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~ 377 (615)
...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 233677777888888888888888887765310 011 3366677777888888 888
Q ss_pred HHHHHHHHHhc----CC-CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCChHH
Q 036661 378 GKWFDNYACSG----GL-KDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGEFVE 443 (615)
Q Consensus 378 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~ 443 (615)
|...+....+. +. +....++..+...|...|++++|...+++... ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888776542 11 11234677778888888888888888877654 12 2367778888888889999
Q ss_pred HHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHH
Q 036661 444 ALDLFHQMMELDL-RPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKE 514 (615)
Q Consensus 444 a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 514 (615)
|...+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..++.+|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888888775310 111 346777788888888899998888887653222222 4467778888888889888
Q ss_pred HHHHHHhCC-----C--CC-ChhhHHHHHHHHHHhCChh
Q 036661 515 ALDFVQSMP-----I--KS-DAGIWGTLLCACKIHRNIE 545 (615)
Q Consensus 515 A~~~~~~~~-----~--~p-~~~~~~~l~~~~~~~~~~~ 545 (615)
|.+.+++.. . .+ ...++..+...+...|+..
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 888888764 1 11 1224444555555555544
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=2.6e-10 Score=117.30 Aligned_cols=216 Identities=9% Similarity=0.003 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHH-HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661 342 EALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGK-WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 420 (615)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 420 (615)
.+..+|++.... .+-+...|...+.-+...|+.+.|. .+++...... +.+...+..++....+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355667777665 3456667777777777778888886 8998887643 566777777888888899999999998876
Q ss_pred CC-------------C------------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhcc-
Q 036661 421 PE-------------K------------TVVSWTTMIAGCALNGEFVEALDLFHQMMEL-DLRPNRVTFLAVLQACTHA- 473 (615)
Q Consensus 421 ~~-------------~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~- 473 (615)
.. | ...+|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 53 2 1236777788778888999999999999875 2 22233443333322333
Q ss_pred CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----ChhhHHHHHHHHHHhCChhHHH
Q 036661 474 GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 474 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
++.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++.. ..| ....|...+..-...|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999998753 3455567788888888999999999999877 333 2346777777778889999999
Q ss_pred HHHHHHhccCCCCC
Q 036661 549 YVAYRLFELEPHSA 562 (615)
Q Consensus 549 ~~~~~~~~~~p~~~ 562 (615)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999864
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=5.8e-13 Score=115.19 Aligned_cols=168 Identities=10% Similarity=0.014 Sum_probs=143.8
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661 392 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ 468 (615)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 468 (615)
.+..+|..+...|.+.|++++|.+.|++..+ .++.+|..+..+|...|++++|+..++...... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3567788899999999999999999988765 467789999999999999999999999998873 445567778888
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhH
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEI 546 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 546 (615)
.+...++++.+...+.+..+. .+.+...+..++.+|.+.|++++|++.|++.. .+.+..++..++.++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 899999999999999998853 23456788889999999999999999999987 44466789999999999999999
Q ss_pred HHHHHHHHhccCCCCC
Q 036661 547 GEYVAYRLFELEPHSA 562 (615)
Q Consensus 547 A~~~~~~~~~~~p~~~ 562 (615)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999753
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=6e-13 Score=138.52 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=145.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHH
Q 036661 424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSC 501 (615)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 501 (615)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ...+..+..+|.+.|++++|+..|+++.+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3467888999999999999999999999986 554 578999999999999999999999999853 454 678899
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChH
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWD 579 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 579 (615)
++.+|.+.|++++|++.|+++. ..| +...+..++.++...|++++|++.++++++++|+++.++..++.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999987 444 56789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 036661 580 GVANLRTMMKRN 591 (615)
Q Consensus 580 ~A~~~~~~~~~~ 591 (615)
+|.+.++++.+.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=8.4e-13 Score=114.23 Aligned_cols=164 Identities=12% Similarity=0.030 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 036661 428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG 507 (615)
Q Consensus 428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 507 (615)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444445555555555555555554431 223445555555555666666666666665532 1223445555666666
Q ss_pred hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661 508 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR 585 (615)
Q Consensus 508 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 585 (615)
..|++++|.+.++++. .+.+...+..++..+...|++++|...++++++..|+++.++..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666654 33345566777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCcc
Q 036661 586 TMMKRNQVK 594 (615)
Q Consensus 586 ~~~~~~~~~ 594 (615)
+++.+..+.
T Consensus 168 ~~~~~~~~~ 176 (186)
T 3as5_A 168 KKANELDEG 176 (186)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHcCCC
Confidence 887765543
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.4e-12 Score=128.95 Aligned_cols=234 Identities=12% Similarity=0.052 Sum_probs=148.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHhhcccchhhHHHHHHHHHHhc----C-CCCchHH
Q 036661 327 WTAMISGYAQKGDLDEALRLFFAMEAA----GE-VPDLVTVLSMISGCGQSGALELGKWFDNYACSG----G-LKDNVMV 396 (615)
Q Consensus 327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 396 (615)
+..+...|...|++++|+..+++..+. +. +.....+..+...+...|+++.|...++...+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444445555555555555444321 10 112233444444555555555555555544431 1 1122335
Q ss_pred HHHHHHHHHhcCC-----------------hHHHHHHHhcCCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661 397 CNALIDMYSKCGS-----------------IGDARELFYALPE-----K----TVVSWTTMIAGCALNGEFVEALDLFHQ 450 (615)
Q Consensus 397 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 450 (615)
+..+...|...|+ +++|.+.+++... . ...++..+...+...|++++|+..+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 6666666554432 1 224677788888899999999999888
Q ss_pred HHHcCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 036661 451 MMELDL-RPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQS 521 (615)
Q Consensus 451 ~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (615)
..+... .++ ...+..+...|...|++++|...+++......-..+ ..++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 876310 012 136777888999999999999999988753221111 45677889999999999999999988
Q ss_pred CC-C---CCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 522 MP-I---KSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 522 ~~-~---~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
.. . .++ ..++..++..+...|++++|...+++++++.+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 75 1 111 236777888899999999999999999987764
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=2.1e-10 Score=117.95 Aligned_cols=438 Identities=10% Similarity=-0.036 Sum_probs=282.5
Q ss_pred ChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCC---HHHHHH
Q 036661 135 FLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCND---LKMAEL 211 (615)
Q Consensus 135 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 211 (615)
...+-+..|+.....+ +-|..+|..++..+...+.++.+..+++.++.. ++.....|...+..-.+.+. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555566666654 358888999999998889999999999999876 45567788888888888888 999999
Q ss_pred HHHhcccCC---CCcchHHHHHHHHhcCCCh--------hhHHHHHHHHHH-CCC-CCCH-HhHHHHHHhcc--------
Q 036661 212 VFRGIEEGL---RTVVSWNSIIGGCTYGDKF--------DDSLNFYRHMIY-DGF-RPDV-TTVVSLLSSCV-------- 269 (615)
Q Consensus 212 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~-------- 269 (615)
+|++..... |++..|...+....+.++. +.+.++|+..+. .|. .|+. ..|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999988775 8888888888766554443 233466666544 355 4543 44444443221
Q ss_pred -CchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 036661 270 -CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFF 348 (615)
Q Consensus 270 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 348 (615)
..++++.+..+|..++......-..+|......-...+. ..+.+++ .- ...+++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~---------------~e--~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHI---------------GE--LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHH---------------HH--HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHH---------------HH--hhHHHHHHHHHHH
Confidence 123456677777777642111111222211111000000 0011111 10 0112333333343
Q ss_pred HHHHC--CC----C-----------C-----CH---HHHHHHHHhhcccc-------hhhHHHHHHHHHHhcCCCCchHH
Q 036661 349 AMEAA--GE----V-----------P-----DL---VTVLSMISGCGQSG-------ALELGKWFDNYACSGGLKDNVMV 396 (615)
Q Consensus 349 ~~~~~--~~----~-----------~-----~~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~ 396 (615)
++... ++ + | +. ..|...+.---..+ ..+.+..+|+++.... +....+
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHH
Confidence 32210 11 0 1 00 12222222211111 2334566777777653 557788
Q ss_pred HHHHHHHHHhcCChHHHH-HHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC----
Q 036661 397 CNALIDMYSKCGSIGDAR-ELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDL---------RPN---- 459 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~p~---- 459 (615)
|...+..+...|+.+.|. ++|+.... .+...|...+....+.|++++|..+|+++.+... .|+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 888888888899998896 99887655 3556677888888899999999999999986410 142
Q ss_pred --------HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCCh
Q 036661 460 --------RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG-KLKEALDFVQSMP--IKSDA 528 (615)
Q Consensus 460 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~p~~ 528 (615)
...|...+....+.|..+.|..+|.++.+.. -.+....|...+..-.+.| +.+.|.++|+... .+.+.
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence 2367777777788899999999999998641 1223445555555545554 5899999999886 44456
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhccCCC---CCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPH---SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
..|..++......|+.+.|..+|+++++..|+ ....|..+...-...|+.+.+.++.+++.+..+.
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 67778888888899999999999999998883 4567888888888999999999999999987764
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=130.41 Aligned_cols=237 Identities=13% Similarity=0.101 Sum_probs=132.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhc------CCC
Q 036661 325 VSWTAMISGYAQKGDLDEALRLFFAMEAA-------GEVPDLVTVLSMISGCGQSGALELGKWFDNYACSG------GLK 391 (615)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~ 391 (615)
.++..+...+...|++++|...++++.+. ..+.....+..+...+...|+++.|...++...+. +..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35666777777777888777777776652 11222334444455555555555555555544331 000
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHH
Q 036661 392 DNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL------DLRPN-RVTFL 464 (615)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~ 464 (615)
| ....++..+...+...|++++|...++++.+. +-.|+ ...+.
T Consensus 108 ~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 108 P------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp H------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred h------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 0 11234555666666666666666666666553 21222 23566
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhC-----CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---------CCCh
Q 036661 465 AVLQACTHAGFLEKGWGYFNLMTKVYQ-----VNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-I---------KSDA 528 (615)
Q Consensus 465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---------~p~~ 528 (615)
.+...+...|++++|..+++++.+... ..| ....+..++.+|...|++++|.+.++++. . .+..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 666777777777777777777664311 012 23456667777777777777777776654 0 1111
Q ss_pred -h------hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 529 -G------IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 529 -~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
. .+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 11222233344567777777888888888888888999999999999999999999887653
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=9.1e-12 Score=117.43 Aligned_cols=221 Identities=11% Similarity=0.011 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc-------cchh-------hHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 036661 341 DEALRLFFAMEAAGEVPDLVTVLSMISGCGQ-------SGAL-------ELGKWFDNYACSGGLKDNVMVCNALIDMYSK 406 (615)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (615)
++|...|++..... +.+...|..+...+.. .|+. ++|..+++...+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888887752 4556666666666542 3664 7888888888773224556678888888888
Q ss_pred cCChHHHHHHHhcCCC--C-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCchHHHHH
Q 036661 407 CGSIGDARELFYALPE--K-TVV-SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC-THAGFLEKGWG 481 (615)
Q Consensus 407 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 481 (615)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887665 2 343 78888888888888888888888888763 23334444333332 23688888888
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CC--ChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661 482 YFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPI----KS--DAGIWGTLLCACKIHRNIEIGEYVAYRLF 555 (615)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 555 (615)
+|++..+.. +.+...|..++..+.+.|++++|..+|+++.. +| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887542 33566777888888888888888888888752 33 24467777777778888888888888888
Q ss_pred ccCCCCCCCh
Q 036661 556 ELEPHSAAPY 565 (615)
Q Consensus 556 ~~~p~~~~~~ 565 (615)
+..|+++...
T Consensus 269 ~~~p~~~~~~ 278 (308)
T 2ond_A 269 TAFREEYEGK 278 (308)
T ss_dssp HHTTTTTSSC
T ss_pred HHcccccccc
Confidence 8888765443
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.8e-12 Score=126.78 Aligned_cols=224 Identities=10% Similarity=-0.017 Sum_probs=147.6
Q ss_pred HhhcccchhhHHHHHHHHHHhc--CCCC---chHHHHHHHHHHHhcCChHHHHHHHhcCCC-----C-----ChHHHHHH
Q 036661 367 SGCGQSGALELGKWFDNYACSG--GLKD---NVMVCNALIDMYSKCGSIGDARELFYALPE-----K-----TVVSWTTM 431 (615)
Q Consensus 367 ~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l 431 (615)
..+...|+++.|...++...+. ..+. ...++..+...|...|+++.|...+++..+ + ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3345566666666666666542 1111 234566667777777777777666665432 1 12467777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhh---CC-CCChhHHHHH
Q 036661 432 IAGCALNGEFVEALDLFHQMMELDL-RPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY---QV-NPELNHYSCM 502 (615)
Q Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l 502 (615)
...|...|++++|+..+++..+... .++ ..++..+..+|...|++++|...+++..+-. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7888888888888888887765310 111 1367777888888888888888888876421 12 2224567778
Q ss_pred HHHHHhcCChHHHHHHHHhCC------CCCCh-hhHHHHHHHHHHhCC---hhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661 503 ADLLGRKGKLKEALDFVQSMP------IKSDA-GIWGTLLCACKIHRN---IEIGEYVAYRLFELEPHSAAPYVEMANIY 572 (615)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 572 (615)
+.+|.+.|++++|.+.+++.. ..|.. ..+..+...+...|+ .++|...+++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 888888888888888888765 12221 224556666777777 77777777776 33344456778889999
Q ss_pred HccCChHHHHHHHHHHHhc
Q 036661 573 ALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 573 ~~~g~~~~A~~~~~~~~~~ 591 (615)
...|++++|.+++++..+.
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999888763
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=2.8e-12 Score=115.19 Aligned_cols=167 Identities=10% Similarity=0.004 Sum_probs=102.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHH
Q 036661 424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCM 502 (615)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 502 (615)
++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..+++..+ ..| +...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence 34455555566666666666666666666653224555555566666666666666666666653 223 23455556
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-Ch-------hhHHHHHHHHHHhCChhHHHHHHHHHhccCCC--CCCChHhHHHH
Q 036661 503 ADLLGRKGKLKEALDFVQSMP-IKS-DA-------GIWGTLLCACKIHRNIEIGEYVAYRLFELEPH--SAAPYVEMANI 571 (615)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 571 (615)
+.+|...|++++|.+.+++.. ..| +. ..+..++..+...|++++|+..++++++++|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 666666666666666666654 222 22 23555555566666666666666666666666 66666666666
Q ss_pred HHccCCh---------------------------HHHHHHHHHHHhcCc
Q 036661 572 YALGGRW---------------------------DGVANLRTMMKRNQV 593 (615)
Q Consensus 572 ~~~~g~~---------------------------~~A~~~~~~~~~~~~ 593 (615)
|...|+. ++|++.+++..+..+
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 6666666 999999999887654
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=2.7e-12 Score=122.93 Aligned_cols=135 Identities=14% Similarity=0.092 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----h
Q 036661 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDL-RPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----L 496 (615)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 496 (615)
..+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 4677778888888899999888888765310 111 236777888888999999999999888753222222 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP-I---KSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
..+..++.++...|++++|...++++. . ..+ ..++..+...+...|++++|...+++++++.+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 567778899999999999999998875 1 111 336677888999999999999999999988765
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=1.2e-12 Score=131.09 Aligned_cols=180 Identities=7% Similarity=-0.046 Sum_probs=157.7
Q ss_pred hHHHHHHHhcCCC---CChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHH
Q 036661 410 IGDARELFYALPE---KTVVSWTTMIAGCALNGEF-VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNL 485 (615)
Q Consensus 410 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 485 (615)
++++...+++... .+...+..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555554333 4678899999999999999 99999999999873 33467999999999999999999999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh--------CChhH
Q 036661 486 MTKVYQVNPELNHYSCMADLLGRK---------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH--------RNIEI 546 (615)
Q Consensus 486 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~--------~~~~~ 546 (615)
+. ...|+...+..++.+|... |++++|.+.++++. .+.+...|..++.++... |++++
T Consensus 163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98 4468888899999999999 99999999999987 444577899999999988 99999
Q ss_pred HHHHHHHHhccCC---CCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 547 GEYVAYRLFELEP---HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 547 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
|+..++++++++| +++..|..++.+|...|++++|++.+++..+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999 9999999999999999999999999999987654
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=3.4e-11 Score=113.51 Aligned_cols=214 Identities=6% Similarity=-0.013 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-------cCCh-------HHHHHHHhcCCC----CChHHHHHHHHHHHh
Q 036661 376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSK-------CGSI-------GDARELFYALPE----KTVVSWTTMIAGCAL 437 (615)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 437 (615)
++|..+|+.+.... +.++..|..++..+.. .|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666777666643 5566666666666543 4665 778877776543 244577777777888
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH-hcCChHH
Q 036661 438 NGEFVEALDLFHQMMELDLRPN-RV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG-RKGKLKE 514 (615)
Q Consensus 438 ~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 514 (615)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888774 454 23 6777777777778888888888887742 1233444443333322 2688888
Q ss_pred HHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhcc---CCC-CCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 515 ALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFEL---EPH-SAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 515 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
|.++|+++. .+.+...|..++..+.+.|++++|+.+++++++. .|+ +...|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888887775 3334567777777777778888888888888874 443 4557777778888888888888888887
Q ss_pred HhcCcc
Q 036661 589 KRNQVK 594 (615)
Q Consensus 589 ~~~~~~ 594 (615)
.+..+.
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 766553
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=2.2e-11 Score=105.12 Aligned_cols=169 Identities=10% Similarity=-0.014 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661 394 VMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC 470 (615)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 470 (615)
...+..+...+...|++++|.+.++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999998876 366788999999999999999999999999873 44667888899999
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661 471 THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 471 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
...|++++|.++++++.+. .+.+...+..++.++...|++++|.+.++++. .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999863 34556788889999999999999999999986 4445678888999999999999999
Q ss_pred HHHHHHhccCCCCCCCh
Q 036661 549 YVAYRLFELEPHSAAPY 565 (615)
Q Consensus 549 ~~~~~~~~~~p~~~~~~ 565 (615)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999876544
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=9.9e-12 Score=111.58 Aligned_cols=206 Identities=10% Similarity=-0.010 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHH
Q 036661 357 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIA 433 (615)
Q Consensus 357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 433 (615)
.|+..+......+...|++++|...++...+...+++...+..+..++...|++++|.+.+++... .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456677777777888888888888888888766436666666688888888888888888876654 34567778888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHH
Q 036661 434 GCALNGEFVEALDLFHQMMELDLRPNR-------VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMA 503 (615)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 503 (615)
++...|++++|+..+++..+.. +.+. ..+..+...+...|++++|+..|+++. ...|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 8888888888888888888752 2233 346666777778888888888888887 33554 45666777
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 504 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
.+|...|+. .++++. ...+...+... .....+.+++|+..++++++++|+++.+...++.+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 777665543 222222 11222222222 2334567899999999999999999888877776654
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=9e-12 Score=121.73 Aligned_cols=230 Identities=10% Similarity=0.064 Sum_probs=163.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHhhcccchhhHHHHHHHHHHhc--CC----CCchHHHH
Q 036661 330 MISGYAQKGDLDEALRLFFAMEAA----GEVP-DLVTVLSMISGCGQSGALELGKWFDNYACSG--GL----KDNVMVCN 398 (615)
Q Consensus 330 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~ 398 (615)
....+...|++++|+..+++.... +..+ ...++..+...+...|+++.|...+....+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455666666776666666542 1111 2245556666666677777777666666541 11 11234677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 036661 399 ALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGEFVEALDLFHQMMEL----DLRPN-RVTFL 464 (615)
Q Consensus 399 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~ 464 (615)
.+...|...|++++|.+.+++... ++ ..++..+..+|...|++++|+..+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888888888888876653 11 247888999999999999999999998872 32244 46788
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 036661 465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRKGK---LKEALDFVQSMPIKSD-AGIWGTLLCA 537 (615)
Q Consensus 465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 537 (615)
.+..++...|++++|...+++..+...-.++ ...+..+...+...|+ +++|+.++++....|+ ...+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999998753221112 2335678889999999 8999999999874443 3466778899
Q ss_pred HHHhCChhHHHHHHHHHhccCC
Q 036661 538 CKIHRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 538 ~~~~~~~~~A~~~~~~~~~~~p 559 (615)
+...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=1.5e-10 Score=112.64 Aligned_cols=155 Identities=12% Similarity=0.011 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcc---CCC-Ccc----cHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHH
Q 036661 298 TLISMYSKCGDIDSARFLFDGM---CDR-TRV----SWTAMISGYAQKGDLDEALRLFFAMEAAGE-VPDL----VTVLS 364 (615)
Q Consensus 298 ~l~~~~~~~~~~~~a~~~~~~~---~~~-~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 364 (615)
.....+...|++++|...+++. .+. +.. .++.+...+...|++++|...+++...... ..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3344555666666666666553 111 111 334445555666666666666665543210 0111 12333
Q ss_pred HHHhhcccchhhHHHHHHHHHHhc----CCC--C-chHHHHHHHHHHHhcCChHHHHHHHhcCCC--C------ChHHHH
Q 036661 365 MISGCGQSGALELGKWFDNYACSG----GLK--D-NVMVCNALIDMYSKCGSIGDARELFYALPE--K------TVVSWT 429 (615)
Q Consensus 365 ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~ 429 (615)
+...+...|+++.|...++...+. +.. | ....+..+...+...|++++|...+++... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 444455555555555555554431 111 1 122333344444555555555544443221 0 112334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 036661 430 TMIAGCALNGEFVEALDLFHQMM 452 (615)
Q Consensus 430 ~l~~~~~~~~~~~~a~~~~~~~~ 452 (615)
.+...+...|++++|...+++..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444555555555554444
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=2.9e-12 Score=121.26 Aligned_cols=245 Identities=12% Similarity=0.080 Sum_probs=154.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhccCC--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 036661 292 DVSVINTLISMYSKCGDIDSARFLFDGMCD--------R---TRVSWTAMISGYAQKGDLDEALRLFFAMEAA------G 354 (615)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 354 (615)
...++..+...+...|++++|..+|+++.. . ....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988733 2 2346788899999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHH
Q 036661 355 EVP-DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIA 433 (615)
Q Consensus 355 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 433 (615)
..| ....+..+...+...|+++.|...++.+.+.. .+ .+..-.......+..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------------~~---------~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR---------------EK---------VLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---------------HH---------HHCTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH---------------HH---------hcCCCChHHHHHHHHHHH
Confidence 222 34566677777778888888888777765421 00 000000011234556666
Q ss_pred HHHhcCChHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhh------CCCCCh----
Q 036661 434 GCALNGEFVEALDLFHQMMEL------DLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVY------QVNPEL---- 496 (615)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~---- 496 (615)
.+...|++++|+.+++++.+. +-.|+. .++..+..++...|++++|..+++++.+.. ...+..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 677777777777777776653 213332 466777778888888888888888776421 111111
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 497 ---NHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 497 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
..+..+...+...+.+.+|...++... ..| ...++..++.++...|++++|...+++++++.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 122233334445566666667777665 333 3457788899999999999999999999998775
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.3e-11 Score=120.21 Aligned_cols=222 Identities=11% Similarity=-0.004 Sum_probs=150.6
Q ss_pred hhcccchhhHHHHHHHHHHhcC--CC---CchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----C-----ChHHHHHHH
Q 036661 368 GCGQSGALELGKWFDNYACSGG--LK---DNVMVCNALIDMYSKCGSIGDARELFYALPE-----K-----TVVSWTTMI 432 (615)
Q Consensus 368 ~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~ 432 (615)
.+...|+++.|...++...+.. .+ ....++..+...|...|+++.|...+++... + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3456677777777777665421 11 1234566677777788887777776665432 1 134677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhh---CCCCChhHHHHHHH
Q 036661 433 AGCALNGEFVEALDLFHQMMEL----DLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY---QVNPELNHYSCMAD 504 (615)
Q Consensus 433 ~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~ 504 (615)
.+|...|++++|.+.+++..+. +-.+. ..++..+..+|...|++++|...+++..... +.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8888889999998888887662 11111 2467778888888999999999888887521 12222556778888
Q ss_pred HHHhcCChHHHHHHHHhCC------CCCCh-hhHHHHHHHHHHhCC---hhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661 505 LLGRKGKLKEALDFVQSMP------IKSDA-GIWGTLLCACKIHRN---IEIGEYVAYRLFELEPHSAAPYVEMANIYAL 574 (615)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 574 (615)
++.+.|++++|.+.+++.. ..|.. ..+..+...+...++ +++|...+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 9999999999999988764 12222 234445555666677 77777777762 2334445677789999999
Q ss_pred cCChHHHHHHHHHHHh
Q 036661 575 GGRWDGVANLRTMMKR 590 (615)
Q Consensus 575 ~g~~~~A~~~~~~~~~ 590 (615)
.|++++|.+.+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988865
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=4e-11 Score=111.96 Aligned_cols=202 Identities=11% Similarity=0.017 Sum_probs=140.0
Q ss_pred hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCChHHH
Q 036661 374 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGEFVEA 444 (615)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 444 (615)
+++.|...+... ...|...|++++|.+.|++... .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466666665554 3346667777777776665433 11 35778888888889999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHhhcc-CchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHH
Q 036661 445 LDLFHQMMELDL---RPN--RVTFLAVLQACTHA-GFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKE 514 (615)
Q Consensus 445 ~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 514 (615)
+..+++..+... .+. ..++..+..+|... |++++|+..|++..+...-..+ ..++..++.++.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 988888876311 111 34678888889986 9999999999998753221111 3467888999999999999
Q ss_pred HHHHHHhCC-CCCChh--------hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC-----hHhHHHHHH--ccCCh
Q 036661 515 ALDFVQSMP-IKSDAG--------IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP-----YVEMANIYA--LGGRW 578 (615)
Q Consensus 515 A~~~~~~~~-~~p~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 578 (615)
|++.++++. ..|+.. .+..++.++...|++++|+..++++++++|+.+.. +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999876 333221 45677788889999999999999999999986654 344566664 55778
Q ss_pred HHHHHHHHHHHh
Q 036661 579 DGVANLRTMMKR 590 (615)
Q Consensus 579 ~~A~~~~~~~~~ 590 (615)
++|++.|+++..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888866543
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.29 E-value=1.3e-10 Score=103.82 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=57.7
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHHHHHHhcCcccCC
Q 036661 533 TLLCACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLRTMMKRNQVKKFP 597 (615)
Q Consensus 533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 597 (615)
.++..+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++++...++....
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 456778899999999999999999999976 57999999999999999999999999988775544
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.27 E-value=1.4e-10 Score=106.52 Aligned_cols=183 Identities=13% Similarity=0.042 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPE--K-T---VVSWTTMIAGCALNGEFVEALDLFHQMMELDL-RPN-RVTFL 464 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~~ 464 (615)
+...+..+...+.+.|++++|...|+++.. | + ...+..+..++...|++++|+..|+++.+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344445555555666666666666655543 2 2 34555555566666666666666666655421 111 23444
Q ss_pred HHHHHhhc--------cCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHH
Q 036661 465 AVLQACTH--------AGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLL 535 (615)
Q Consensus 465 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 535 (615)
.+..++.. .|++++|...|+++.+. .|+. .....+.......++. ...+..++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 45555555 56666666666665543 2221 1111110000000000 00124456
Q ss_pred HHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHcc----------CChHHHHHHHHHHHhcCc
Q 036661 536 CACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALG----------GRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 593 (615)
..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|.+.++++.+..+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 666677777777777777777777643 3666677777655 667777777777765443
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=4.1e-10 Score=102.44 Aligned_cols=242 Identities=10% Similarity=-0.009 Sum_probs=135.2
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHH
Q 036661 301 SMYSKCGDIDSARFLFDGMCDRTRV-SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGK 379 (615)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 379 (615)
+-..-.|.+..++.-...+.+.+.. .-.-+.++|...|++... ..-.|....+..+...+. .+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----HH
Confidence 3445568888887766665433322 223345777777776631 112344434443333332 11 55
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661 380 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KTVVSWTTMIAGCALNGEFVEALDLFHQMMEL 454 (615)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 454 (615)
..++.....+ +++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666555544 34444445666777777777777777776533 23456666677777777777777777777664
Q ss_pred CCCC-----CHHHHHHHHHH--hhccC--chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-
Q 036661 455 DLRP-----NRVTFLAVLQA--CTHAG--FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPI- 524 (615)
Q Consensus 455 ~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 524 (615)
.| +..+...++.+ ....| ++++|..+|+++... .|+......+..++.+.|++++|.+.++.+..
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55 24444445444 22223 677777777776632 34422222233366677777777777665431
Q ss_pred ----------CC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 525 ----------KS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 525 ----------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
.| ++.++..++......|+ +|.++++++.+..|++|.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 13 33444455544455565 6677777777777775543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=3.7e-11 Score=111.71 Aligned_cols=197 Identities=15% Similarity=0.189 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 036661 394 VMVCNALIDMYSKCGSIGDARELFYALPE-----------KTVVSWTTMIAGCALNGEFVEALDLFHQMMEL------DL 456 (615)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 456 (615)
..++..+...|...|++++|...++++.. ....++..+...|...|++++|...++++.+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 44555566666666666666666654431 12346677777777788888888877777653 11
Q ss_pred CCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhh-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC------
Q 036661 457 RPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY-----QVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP------ 523 (615)
Q Consensus 457 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 523 (615)
.|+ ..++..+...+...|++++|..+++++.+.. +..| ...++..++.+|.+.|++++|.++++++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 232 3467777778888888888888888876431 0022 24567778888888888888888887764
Q ss_pred ----CCCCh-hhHHHHHHHHHHhC------ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 524 ----IKSDA-GIWGTLLCACKIHR------NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 524 ----~~p~~-~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
..+.. ..+..+.......+ .+..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12222 23333333333322 233344444444444566667888999999999999999999988765
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=5.8e-10 Score=108.54 Aligned_cols=227 Identities=8% Similarity=0.040 Sum_probs=167.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHhhcccchhhHHHHHHHHHHhc--CC---C-CchHHHH
Q 036661 330 MISGYAQKGDLDEALRLFFAMEAAGE-VPD----LVTVLSMISGCGQSGALELGKWFDNYACSG--GL---K-DNVMVCN 398 (615)
Q Consensus 330 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~ 398 (615)
....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+. .. . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888887765311 122 345666777778888888888887776652 11 1 1245677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCC-HHHH
Q 036661 399 ALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGEFVEALDLFHQMME-----LDLRPN-RVTF 463 (615)
Q Consensus 399 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~-~~~~ 463 (615)
.+...|...|++++|.+.+++... ++ ..++..+..+|...|++++|+..+++..+ . .|. ..++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHHHH
Confidence 788888999999998888876554 12 24678889999999999999999999887 3 333 4678
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-hhhHHHHHH
Q 036661 464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRKGK---LKEALDFVQSMPIKSD-AGIWGTLLC 536 (615)
Q Consensus 464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~ 536 (615)
..+..++.+.|++++|..++++..+...-.++ ...+..+...+...|+ +++|+..+++....|+ ...+..++.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88899999999999999999998864322122 3356667777888888 8999999998763333 345677888
Q ss_pred HHHHhCChhHHHHHHHHHhccC
Q 036661 537 ACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 537 ~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
.|...|++++|...++++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998643
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=1e-11 Score=102.84 Aligned_cols=141 Identities=9% Similarity=-0.020 Sum_probs=92.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 036661 433 AGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGK 511 (615)
Q Consensus 433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 511 (615)
..+...|++++|+..++..... .|+. ..+..+...|.+.|++++|++.|+++.+. -+-+...|..++.+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3344456666666666665543 3333 34555666777777777777777777642 12235566677777777777
Q ss_pred hHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHH-HHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661 512 LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEY-VAYRLFELEPHSAAPYVEMANIYALGGR 577 (615)
Q Consensus 512 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 577 (615)
+++|...|+++. ..| +...+..++..+.+.|++++|.+ +++++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777765 333 45677777777888887765544 4588888888888888888888877775
No 89
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=1e-10 Score=121.85 Aligned_cols=165 Identities=14% Similarity=0.177 Sum_probs=140.9
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 036661 391 KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAV 466 (615)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l 466 (615)
+.+...++.|..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33467788889999999999999999987765 45678999999999999999999999999986 454 5789999
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCC
Q 036661 467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRN 543 (615)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~ 543 (615)
..++...|++++|++.|+++.+. .|+ ...+..++.+|.+.|++++|++.|+++. ..| +...+..++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999853 454 6788999999999999999999999987 444 46688899999999999
Q ss_pred hhHHHHHHHHHhccCCC
Q 036661 544 IEIGEYVAYRLFELEPH 560 (615)
Q Consensus 544 ~~~A~~~~~~~~~~~p~ 560 (615)
+++|.+.+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999886653
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=1.9e-10 Score=105.59 Aligned_cols=205 Identities=11% Similarity=-0.037 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhcCChHHHHHHHhcCCC--C----ChH
Q 036661 356 VPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN---VMVCNALIDMYSKCGSIGDARELFYALPE--K----TVV 426 (615)
Q Consensus 356 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~ 426 (615)
+.+...+......+...|+++.|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+.+.. | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456777778888999999999999999998865 223 67788899999999999999999998765 2 135
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh
Q 036661 427 SWTTMIAGCAL--------NGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN 497 (615)
Q Consensus 427 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 497 (615)
.+..+..++.. .|++++|+..|+++++. .|+. ..... ...+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 67788888888 99999999999999986 4443 22211 1111111110 012
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHh----------CChhHHHHHHHHHhccCCCCC
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIH----------RNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~ 562 (615)
.+..++.+|.+.|++++|+..|+++. ..|+ ...+..++.++... |++++|+..++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 24567788888899999988888875 3333 34566677777655 899999999999999999986
Q ss_pred C---ChHhHHHHHHccCChHHHH
Q 036661 563 A---PYVEMANIYALGGRWDGVA 582 (615)
Q Consensus 563 ~---~~~~l~~~~~~~g~~~~A~ 582 (615)
. +...+..++.+.|+++++.
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 4 4455666666666655443
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=2.6e-10 Score=105.91 Aligned_cols=175 Identities=11% Similarity=0.010 Sum_probs=141.3
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC
Q 036661 412 DARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ 491 (615)
Q Consensus 412 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 491 (615)
...+.+......+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 34444444444455667778888899999999999999999873 335578888999999999999999999988743
Q ss_pred CCCChhHHHH-HHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC--CCChH
Q 036661 492 VNPELNHYSC-MADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS--AAPYV 566 (615)
Q Consensus 492 ~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~ 566 (615)
.|+...... ....+.+.|+.++|.+.+++.. .+.+...+..++..+...|++++|+..++++++.+|++ +.++.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 455443332 3344677888899999998876 44467788999999999999999999999999999998 78999
Q ss_pred hHHHHHHccCChHHHHHHHHHHHh
Q 036661 567 EMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 567 ~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.++.+|...|+.++|...+++...
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999988754
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=2.8e-10 Score=92.18 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=77.9
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh
Q 036661 464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH 541 (615)
Q Consensus 464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 541 (615)
..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|..+++++. .+.+...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444444555555555555554432 12233344445555555555555555555543 223344556666677777
Q ss_pred CChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 542 RNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 777777777777777777777777788888888888888888887776544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.17 E-value=8.8e-11 Score=123.09 Aligned_cols=168 Identities=13% Similarity=-0.064 Sum_probs=98.2
Q ss_pred HhcCChHHHHHHHhcCC--------C---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661 405 SKCGSIGDARELFYALP--------E---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA 473 (615)
Q Consensus 405 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 473 (615)
...|++++|.+.+++.. . .+...+..+..++...|++++|+..++++.+.+ +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666665544 1 234556666666666666666666666666642 22345566666666666
Q ss_pred CchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHH
Q 036661 474 GFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYV 550 (615)
Q Consensus 474 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~ 550 (615)
|++++|...|+++.+. .| +...+..++.+|.+.|++++ .+.|+++. .+.+...+..++.++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666632 23 34455566666666666666 66666654 222344566666666666666666666
Q ss_pred HHHHhccCCCCCCChHhHHHHHHccCC
Q 036661 551 AYRLFELEPHSAAPYVEMANIYALGGR 577 (615)
Q Consensus 551 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 577 (615)
++++++++|+++.++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655443
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=3e-09 Score=96.84 Aligned_cols=241 Identities=10% Similarity=0.026 Sum_probs=168.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 036661 331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI 410 (615)
Q Consensus 331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (615)
++-..-.|.+..++.-...+. .........-+.+++...|++... ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 445566788888887433322 122223333445666666665532 1123333344444433 3333
Q ss_pred HHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCchHHHHHHHHHH
Q 036661 411 GDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP-NRVTFLAVLQACTHAGFLEKGWGYFNLM 486 (615)
Q Consensus 411 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 486 (615)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6677776553 455666788899999999999999999988765323 3467888899999999999999999999
Q ss_pred HHhhCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 487 TKVYQVNP-----ELNHYSCMADL--LGRKG--KLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 487 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
.+. .| +..+...++.+ ....| ++++|..+|+++. ..|+......+..++.+.|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 843 66 34555556655 33444 9999999999987 445533334444588899999999999998887
Q ss_pred c----------CCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 557 L----------EPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 557 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
. +|+++.++.+++.+....|+ +|.+++.++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 6 58899999899888888897 89999999988664
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=1.7e-10 Score=98.56 Aligned_cols=159 Identities=11% Similarity=0.041 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH-H
Q 036661 428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL-L 506 (615)
Q Consensus 428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 506 (615)
+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 3344555666666666666666665542 223455666666666667777777666666532 2232222222211 1
Q ss_pred HhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC--CCChHhHHHHHHccCChHHHH
Q 036661 507 GRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS--AAPYVEMANIYALGGRWDGVA 582 (615)
Q Consensus 507 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 582 (615)
...++..+|...+++.. ..| +...+..++.++...|++++|+..++++++.+|+. +..+..++.+|...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233345677777665 344 56788888899999999999999999999999875 458999999999999999999
Q ss_pred HHHHHHHh
Q 036661 583 NLRTMMKR 590 (615)
Q Consensus 583 ~~~~~~~~ 590 (615)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=3.6e-11 Score=99.48 Aligned_cols=125 Identities=13% Similarity=0.003 Sum_probs=104.8
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhC
Q 036661 466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHR 542 (615)
Q Consensus 466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 542 (615)
|...+...|++++|+..++.... ..|+ ...+..++.+|.+.|++++|.+.|+++. .+.+..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45667788999999999998873 3343 3456679999999999999999999987 4446778999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHH-HHHHHhcCc
Q 036661 543 NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANL-RTMMKRNQV 593 (615)
Q Consensus 543 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 593 (615)
++++|+..++++++++|+++.+|..++.+|.+.|++++|.+. +++..+..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 588877554
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=4.8e-09 Score=101.90 Aligned_cols=266 Identities=12% Similarity=-0.025 Sum_probs=195.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHhhcccchhhHHHHHHHHHHhcC--C-CC--chHHHH
Q 036661 328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV----TVLSMISGCGQSGALELGKWFDNYACSGG--L-KD--NVMVCN 398 (615)
Q Consensus 328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~ 398 (615)
......+...|++++|...+++........+.. .+..+...+...|+++.|...++...... . .+ ....+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556778999999999999988764223332 45556677888999999999999877521 1 11 123456
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHH
Q 036661 399 ALIDMYSKCGSIGDARELFYALPE-------K----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLR--P--NRVTF 463 (615)
Q Consensus 399 ~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~~~ 463 (615)
.+...+...|++++|.+.+++... + ....+..+...+...|++++|...+++..+.... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 778889999999999998886543 1 1235667888899999999999999998875322 1 23567
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----hhhHH
Q 036661 464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS-----CMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWG 532 (615)
Q Consensus 464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~ 532 (615)
..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788899999999999999999875422111111121 23355789999999999999987 2221 22456
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhccCCCCCC------ChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 533 TLLCACKIHRNIEIGEYVAYRLFELEPHSAA------PYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.+...+...|++++|...++++++..+.... .+..++.+|...|++++|...+++..+...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 7778889999999999999999998776433 344568899999999999999999887643
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=2.2e-09 Score=94.64 Aligned_cols=162 Identities=6% Similarity=-0.086 Sum_probs=134.6
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC----chHHHHHHHHHHHHhhCCCCChhH
Q 036661 423 KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG----FLEKGWGYFNLMTKVYQVNPELNH 498 (615)
Q Consensus 423 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 498 (615)
.++..+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|..+|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 466777778888888899999999999998865 55677777777877 6 899999999998742 35667
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCC-CCCC---hhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChH
Q 036661 499 YSCMADLLGR----KGKLKEALDFVQSMP-IKSD---AGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYV 566 (615)
Q Consensus 499 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 566 (615)
+..|..+|.. .+++++|+++|++.. ..|. ...+..+...|.. .+++++|+..++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888887 889999999999987 4442 6788888888888 78999999999999998 67788999
Q ss_pred hHHHHHHcc-C-----ChHHHHHHHHHHHhcCc
Q 036661 567 EMANIYALG-G-----RWDGVANLRTMMKRNQV 593 (615)
Q Consensus 567 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 593 (615)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999864 3 89999999999988775
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=7.2e-10 Score=103.39 Aligned_cols=174 Identities=9% Similarity=0.003 Sum_probs=139.1
Q ss_pred ChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhhccCchHHHHHHH
Q 036661 409 SIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL----DLRPN-RVTFLAVLQACTHAGFLEKGWGYF 483 (615)
Q Consensus 409 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 483 (615)
++++|...|++. +..|...|++++|...|++..+. |-.++ ..++..+..+|...|++++|+..+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888876653 66788899999999999988763 31222 358889999999999999999999
Q ss_pred HHHHHhhCCCCC----hhHHHHHHHHHHhc-CChHHHHHHHHhCC-CCC---C----hhhHHHHHHHHHHhCChhHHHHH
Q 036661 484 NLMTKVYQVNPE----LNHYSCMADLLGRK-GKLKEALDFVQSMP-IKS---D----AGIWGTLLCACKIHRNIEIGEYV 550 (615)
Q Consensus 484 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~p---~----~~~~~~l~~~~~~~~~~~~A~~~ 550 (615)
++..+-..-..+ ..++..++.+|... |++++|++.+++.. ..| + ..++..++..+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 998754321122 35788899999996 99999999999886 222 1 34678888999999999999999
Q ss_pred HHHHhccCCCCCC-------ChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 551 AYRLFELEPHSAA-------PYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 551 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+++++++.|+++. .|..++.+|...|++++|+..+++..+..+
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999998765 367889999999999999999998876443
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=2.2e-09 Score=86.78 Aligned_cols=131 Identities=16% Similarity=0.276 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLL 506 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 506 (615)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777888888899999999999988764 345677888888888999999999999998853 234566778888999
Q ss_pred HhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 507 GRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 507 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999998876 3445667888888999999999999999999998886
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.11 E-value=2.5e-10 Score=93.68 Aligned_cols=102 Identities=11% Similarity=0.019 Sum_probs=87.3
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661 492 VNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 492 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 568 (615)
+.|+ ...+..++..+.+.|++++|.+.|+++. .+.+...|..++.++...|++++|+..|+++++++|+++.+|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 3567778888888999999999998886 444677888999999999999999999999999999999999999
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCc
Q 036661 569 ANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
|.+|...|++++|++.|++..+...
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987654
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=1.5e-09 Score=95.40 Aligned_cols=127 Identities=7% Similarity=-0.017 Sum_probs=98.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHh
Q 036661 430 TMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGR 508 (615)
Q Consensus 430 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 508 (615)
.+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...|+++.+. .| +...+..++.+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 38889999999999999999999873 335678888999999999999999999999853 44 46778888888876
Q ss_pred cCC--hHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 509 KGK--LKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 509 ~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
.|+ .+.+...+++.. ..|....+.....++...|++++|+..++++++++|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 455677777765 2222334555666777889999999999999999997
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=5.5e-10 Score=115.16 Aligned_cols=160 Identities=8% Similarity=-0.012 Sum_probs=123.1
Q ss_pred cCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661 407 CGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF 483 (615)
Q Consensus 407 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 483 (615)
.|++++|.+.+++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998776 356789999999999999999999999999863 335678888999999999999999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh---CChhHHHHHHHHHhccC
Q 036661 484 NLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---RNIEIGEYVAYRLFELE 558 (615)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 558 (615)
++..+. .+.+...+..++.+|.+.|++++|.+.+++.. .+.+...+..++.++... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999853 23346788889999999999999999999986 334566888888999999 99999999999999999
Q ss_pred CCCCCChHhHH
Q 036661 559 PHSAAPYVEMA 569 (615)
Q Consensus 559 p~~~~~~~~l~ 569 (615)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 104
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=2.3e-09 Score=99.45 Aligned_cols=199 Identities=13% Similarity=0.040 Sum_probs=121.4
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhc------CC-CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC----------
Q 036661 360 VTVLSMISGCGQSGALELGKWFDNYACSG------GL-KDNVMVCNALIDMYSKCGSIGDARELFYALPE---------- 422 (615)
Q Consensus 360 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 422 (615)
.++..+...+...|+++.|...++.+.+. +- +....++..+...|...|++++|.+.+++...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444445555555555555555544432 11 22334556666666667777766666665432
Q ss_pred -CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhh----
Q 036661 423 -KTVVSWTTMIAGCALNGEFVEALDLFHQMMEL------DLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY---- 490 (615)
Q Consensus 423 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 490 (615)
....++..+...+...|++++|...++++.+. +-.|+ ..++..+..++...|++++|..+++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 12356777888888889999999988888764 11333 3577888889999999999999999887531
Q ss_pred --CCCCC-hhHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661 491 --QVNPE-LNHYSCMADLLGRKGK------LKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 491 --~~~~~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
...+. ...+..+...+...+. +.++...++... ..|+ ...+..++..+...|++++|...++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 11222 2334444444444333 344444555544 2232 3467888899999999999999999998753
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=4.5e-10 Score=117.77 Aligned_cols=154 Identities=10% Similarity=-0.034 Sum_probs=134.5
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 036661 436 ALNGEFVEALDLFHQMM--------ELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG 507 (615)
Q Consensus 436 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 507 (615)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++.+. .+.+...+..++.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 67899999999999998 432 334578888899999999999999999999863 2345678889999999
Q ss_pred hcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661 508 RKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR 585 (615)
Q Consensus 508 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 585 (615)
..|++++|.+.|+++. ..| +...+..++.++...|++++ ++.|+++++++|+++.+|..++.+|.+.|++++|++.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987 444 56688899999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhcCc
Q 036661 586 TMMKRNQV 593 (615)
Q Consensus 586 ~~~~~~~~ 593 (615)
+++.+..+
T Consensus 558 ~~al~l~P 565 (681)
T 2pzi_A 558 DEVPPTSR 565 (681)
T ss_dssp HTSCTTST
T ss_pred HhhcccCc
Confidence 88876554
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=8.8e-10 Score=87.76 Aligned_cols=108 Identities=12% Similarity=-0.034 Sum_probs=60.0
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK 539 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 539 (615)
.+......|.+.|++++|++.|++..+. .+.+...|..++.+|.+.|++++|++.+++.. .+.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555566666666666666655532 12234455555555556666666665555554 2233445555666666
Q ss_pred HhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
..|++++|++.++++++++|+++.++..++.+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666665555555443
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=1.3e-09 Score=95.90 Aligned_cols=162 Identities=11% Similarity=0.059 Sum_probs=123.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH----------------HHHHhhccCchHHHHHHHHHHHHhh
Q 036661 428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLA----------------VLQACTHAGFLEKGWGYFNLMTKVY 490 (615)
Q Consensus 428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 490 (615)
+......+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|+..|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 334455667778888888888888775 4543 45555 888999999999999999999853
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhC--ChhHHHHHHHHHhccCCCCCCChH
Q 036661 491 QVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHR--NIEIGEYVAYRLFELEPHSAAPYV 566 (615)
Q Consensus 491 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~ 566 (615)
.+-+...+..++.+|...|++++|.+.|+++. ..| +...+..++.++...| +.+.+...++++....|. ...+.
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 23356788999999999999999999999987 444 5678888888876654 445667777777654443 23567
Q ss_pred hHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 567 EMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 567 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
.++.++...|++++|++.|++..+..+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7888999999999999999999887654
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.03 E-value=1.1e-09 Score=87.25 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=91.8
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661 492 VNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 492 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 568 (615)
+.|+ ...+...+..|.+.|++++|++.|++.. .+.+...|..++.++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4455 3567788999999999999999999987 445677899999999999999999999999999999999999999
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCc
Q 036661 569 ANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
|.+|...|++++|++.|++..+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999988654
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=1e-08 Score=96.29 Aligned_cols=221 Identities=10% Similarity=0.016 Sum_probs=156.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 036661 336 QKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARE 415 (615)
Q Consensus 336 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 415 (615)
..|++++|.+++++..+... .. .+...++++.|...+... ...|...|++++|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 35677888888887765321 11 111146677777666554 456778888888888
Q ss_pred HHhcCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhhccCchHHHHH
Q 036661 416 LFYALPE-----KT----VVSWTTMIAGCALNGEFVEALDLFHQMMELDL---RPN--RVTFLAVLQACTHAGFLEKGWG 481 (615)
Q Consensus 416 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~ 481 (615)
.|.+... .+ ..+|+.+...|...|++++|+..+++..+.-. .|. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776543 11 34788889999999999999999998876311 222 2467788888988 99999999
Q ss_pred HHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----hhhHHHHHHHHHHhCChhHHHH
Q 036661 482 YFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-I---KSD----AGIWGTLLCACKIHRNIEIGEY 549 (615)
Q Consensus 482 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~A~~ 549 (615)
.|++......-..+ ..++..++.+|.+.|++++|++.+++.. . .+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998754221111 3578889999999999999999999876 1 111 1255566677778899999999
Q ss_pred HHHHHhccCCCCCCC-----hHhHHHHHHccCChHHHHHH
Q 036661 550 VAYRLFELEPHSAAP-----YVEMANIYALGGRWDGVANL 584 (615)
Q Consensus 550 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 584 (615)
.+++++ ++|+.... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99986654 33455555 56777666653
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.00 E-value=4e-09 Score=93.25 Aligned_cols=130 Identities=11% Similarity=-0.033 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 036661 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL 505 (615)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 505 (615)
..+..+...+...|++++|+..+++.. .|+...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 345667778888999999999998773 667888888999999999999999999998853 23456778888999
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-Ch----------------hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 506 LGRKGKLKEALDFVQSMP-IKS-DA----------------GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
|...|++++|.+.++++. ..| +. ..+..++.++...|++++|...++++++++|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999998875 222 22 577788888889999999999999999999985
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=9.1e-09 Score=106.02 Aligned_cols=152 Identities=13% Similarity=-0.028 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036661 439 GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDF 518 (615)
Q Consensus 439 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 518 (615)
|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..++.+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56666666666666542 223456666666666667777777777666631 122345566666667777777777777
Q ss_pred HHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc---CChHHHHHHHHHHHhcCc
Q 036661 519 VQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG---GRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 519 ~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~ 593 (615)
+++.. .+.+...+..++.++...|++++|.+.++++++.+|+++..+..++.+|... |++++|.+.+++..+.+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 66665 2333456666666666677777777777777777776666666777777766 667777777666665544
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.00 E-value=6.4e-10 Score=91.53 Aligned_cols=96 Identities=8% Similarity=-0.068 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL 574 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 574 (615)
..+..++..+.+.|++++|...|+++. .+.+...|..++.++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 445556666666677777766666654 333455666666677777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhcC
Q 036661 575 GGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 575 ~g~~~~A~~~~~~~~~~~ 592 (615)
.|++++|++.+++..+..
T Consensus 102 ~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 777777777777666544
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=5.7e-08 Score=89.52 Aligned_cols=191 Identities=15% Similarity=0.159 Sum_probs=118.7
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHhcCCC---CChHHHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCCHHHHH
Q 036661 397 CNALIDMYSKCG--SIGDARELFYALPE---KTVVSWTTMIAGC----ALN---GEFVEALDLFHQMMELDLRPNRVTFL 464 (615)
Q Consensus 397 ~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~ 464 (615)
++.-..++...| +++++++.++.+.. .+..+|+.-...+ ... +++++++.+++++.+.. +-|..+|.
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 333333333344 55555555554443 2233444433333 333 56777777777777753 34556666
Q ss_pred HHHHHhhccCchH--HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhCC--CCCChhhHHHH
Q 036661 465 AVLQACTHAGFLE--KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGK------LKEALDFVQSMP--IKSDAGIWGTL 534 (615)
Q Consensus 465 ~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~p~~~~~~~l 534 (615)
.-..++.+.|.++ +++++++++.+. -+-+...|+.-..++.+.|+ ++++++.++++. .+-+...|..+
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 6666666666666 777777777743 23344566666666666665 677777777765 44456677777
Q ss_pred HHHHHHhCC-hhHHHHHHHHHhccC---CCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 535 LCACKIHRN-IEIGEYVAYRLFELE---PHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 535 ~~~~~~~~~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
...+.+.|+ .+.+....+++++++ |.++.++..++.+|.+.|+.++|+++++++.+
T Consensus 227 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 227 LGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777777665 344556777777665 67777788888888888888888888888765
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=4.8e-08 Score=91.09 Aligned_cols=203 Identities=9% Similarity=0.019 Sum_probs=139.9
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC
Q 036661 383 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV---SWTTMIAGCALNGEFVEALDLFHQMMELDL-RP 458 (615)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p 458 (615)
..+......|+..+...+...+.-.- ..++..-...+.. .+...+..+...|++++|..++++..+... .|
T Consensus 35 s~~e~g~~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~ 109 (293)
T 3u3w_A 35 SRIESGAVYPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP 109 (293)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCCh
Confidence 33333334566666655555443211 1223222222222 233346778889999999999999887421 22
Q ss_pred CHH----HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CC
Q 036661 459 NRV----TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-----IK 525 (615)
Q Consensus 459 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~ 525 (615)
+.. .+..+...+...|++++|+..++++.....-.++ ..+++.++.+|...|++++|.+.++++. .+
T Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 189 (293)
T 3u3w_A 110 EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 221 2334666777888999999999999853222223 2368889999999999999999998875 11
Q ss_pred CC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChHhHHHHHHccCC-hHHHHHHHHHHHh
Q 036661 526 SD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYVEMANIYALGGR-WDGVANLRTMMKR 590 (615)
Q Consensus 526 p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 590 (615)
.+ ..++..++..|...|++++|+..+++++++.+.. +.+|..+|.+|.+.|+ +++|.+.+++...
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 12 2367788899999999999999999999876543 4678899999999995 6999999998865
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=9.3e-07 Score=88.29 Aligned_cols=204 Identities=8% Similarity=-0.072 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661 341 DEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 420 (615)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 420 (615)
+.+..+|+++... .+.+...|...+.-+...|+.+.|..+++..... +.+...+...... ...++. ...+.+..
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHH
Confidence 3466778877765 3455666766677777788888999999888877 4444333322211 111111 11222211
Q ss_pred C----------C--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCchHHHHHHHHHHH
Q 036661 421 P----------E--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH-AGFLEKGWGYFNLMT 487 (615)
Q Consensus 421 ~----------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 487 (615)
. . .....|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 1 0 11245666777777778899999999988 321 2344444432222222 336899999999998
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 488 KVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
+.++ .+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++.++
T Consensus 348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7542 234456667787888899999999999985 2456777777777788999999998888874
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=6.6e-09 Score=96.40 Aligned_cols=137 Identities=11% Similarity=-0.021 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHH
Q 036661 457 RPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLL 535 (615)
Q Consensus 457 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 535 (615)
+.+...+..+...+...|++++|...|+++.+. .+-+...+..++.++.+.|++++|...++++. ..|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 334467778888999999999999999999853 23346778889999999999999999999998 566655433333
Q ss_pred -HHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661 536 -CACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKK 595 (615)
Q Consensus 536 -~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 595 (615)
..+...++.++|...++++++.+|+++..+..++.+|...|++++|++.++++.+..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 346678889999999999999999999999999999999999999999999999876543
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.95 E-value=1.9e-08 Score=93.80 Aligned_cols=164 Identities=9% Similarity=-0.011 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhhccCchHHHHHHHHHHHHhhCC--CCC--hh
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-----VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV--NPE--LN 497 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~ 497 (615)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|+..+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667778889999999988888775322111 12334555677888999999999888742111 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------C
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD-----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------A 562 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~ 562 (615)
++..++..|...|++++|...++++. ..|+ ..++..++..|...|++++|+..+++++++.++. +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999998764 1222 1477888889999999999999999998765431 4
Q ss_pred CChHhHHHHHHccCChHHH-HHHHHHHHh
Q 036661 563 APYVEMANIYALGGRWDGV-ANLRTMMKR 590 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 590 (615)
.+|..+|.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5778899999999999999 777887654
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=1.5e-08 Score=90.30 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=98.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 036661 400 LIDMYSKCGSIGDARELFYALPE--KT----VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR----VTFLAVLQA 469 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~ 469 (615)
+...+.+.|++++|...|+++.. |+ ...+..+..++...|++++|+..|+++.+. .|+. ..+..+..+
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHH
Confidence 34444455555555555554432 11 124444555555555555555555555543 2221 122222222
Q ss_pred hh------------------ccCchHHHHHHHHHHHHhhCCCCChh-HH-----------------HHHHHHHHhcCChH
Q 036661 470 CT------------------HAGFLEKGWGYFNLMTKVYQVNPELN-HY-----------------SCMADLLGRKGKLK 513 (615)
Q Consensus 470 ~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~-~~-----------------~~l~~~~~~~g~~~ 513 (615)
+. ..|++++|...|+++.+. .|+.. .+ ..++..|.+.|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 22 356677777777777643 23321 11 34677889999999
Q ss_pred HHHHHHHhCC-CCCCh----hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661 514 EALDFVQSMP-IKSDA----GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP 564 (615)
Q Consensus 514 ~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 564 (615)
+|+..|+++. ..|+. ..+..++.++.+.|+.++|++.++++....|++...
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 9999999986 44442 467888899999999999999999999999987554
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=3.2e-09 Score=90.75 Aligned_cols=125 Identities=7% Similarity=0.045 Sum_probs=78.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH-HHhcCCh--
Q 036661 436 ALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL-LGRKGKL-- 512 (615)
Q Consensus 436 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 512 (615)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34566777777777776653 3345667777777777777777777777776431 2344556666666 5667776
Q ss_pred HHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 513 KEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 513 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
++|...++++. ..| +...+..++..+...|++++|...++++++.+|+++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 77777777665 223 3456666667777777777777777777777776544
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=1.1e-08 Score=86.09 Aligned_cols=127 Identities=7% Similarity=-0.066 Sum_probs=96.2
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK 539 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 539 (615)
.+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|.+.+++.. .+.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677777777777777777642 23345667777777788888888888877765 3345667888888889
Q ss_pred HhCChhHHHHHHHHHhccCCCCCCChHhHHH--HHHccCChHHHHHHHHHHHh
Q 036661 540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMAN--IYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 590 (615)
..|++++|...++++++.+|+++..+..++. .+...|++++|++.+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998887755444 48888999999999887754
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=1.8e-08 Score=85.76 Aligned_cols=155 Identities=10% Similarity=-0.021 Sum_probs=117.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhc
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA-CTH 472 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 472 (615)
+..+...+...|++++|...+++... .+...+..+..++...|++++|+..++++... .|+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44566778889999999999998886 46678888999999999999999999998775 3444433322211 222
Q ss_pred cCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---hhhHHHHHHHHHHhCChhHH
Q 036661 473 AGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLLCACKIHRNIEIG 547 (615)
Q Consensus 473 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~~~~~~A 547 (615)
.+...+|...+++..+. .| +...+..++.++...|++++|...++++. ..|+ ...+..++..+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22334578888888743 44 46788889999999999999999998876 4554 44788888999999999999
Q ss_pred HHHHHHHhc
Q 036661 548 EYVAYRLFE 556 (615)
Q Consensus 548 ~~~~~~~~~ 556 (615)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=3.7e-08 Score=86.92 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 036661 396 VCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF 475 (615)
Q Consensus 396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 475 (615)
.+..+...+...|++++|.+.|++...++...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455677788899999999999999988888999999999999999999999999999874 4456788889999999999
Q ss_pred hHHHHHHHHHHHHhhCCCC--------------ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHH
Q 036661 476 LEKGWGYFNLMTKVYQVNP--------------ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKI 540 (615)
Q Consensus 476 ~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~ 540 (615)
+++|...|+++.+...-.+ ....+..++.+|.+.|++++|.+.++++. ..|+. .
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~ 155 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------R 155 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------G
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-----------c
Confidence 9999999999986321111 12678889999999999999999999876 56654 2
Q ss_pred hCChhHHHHHHHHHhccCC
Q 036661 541 HRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 541 ~~~~~~A~~~~~~~~~~~p 559 (615)
.+..+.|...+++.....|
T Consensus 156 ~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp GGHHHHHHHHHHTTCCCCC
T ss_pred cchHHHHHHHHHhcccccc
Confidence 3455666666655444443
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.89 E-value=7.8e-09 Score=84.47 Aligned_cols=95 Identities=13% Similarity=-0.084 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG 575 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 575 (615)
.+..++..+.+.|++++|...|+++. .+.+...|..++.++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 34445555555666666666665554 2234445555666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHhcC
Q 036661 576 GRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 576 g~~~~A~~~~~~~~~~~ 592 (615)
|++++|++.+++..+..
T Consensus 100 g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 100 GDLDGAESGFYSARALA 116 (142)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 66666666666665543
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=5e-09 Score=99.58 Aligned_cols=95 Identities=13% Similarity=-0.033 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
...+..++.+|.+.|++++|+..++++. .+.+...+..++.++...|++++|+..++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3567788888999999999999998886 44466788889999999999999999999999999999999999999999
Q ss_pred ccCChHHH-HHHHHHHHh
Q 036661 574 LGGRWDGV-ANLRTMMKR 590 (615)
Q Consensus 574 ~~g~~~~A-~~~~~~~~~ 590 (615)
..|++++| .+.+++|.+
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 456666643
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.87 E-value=7.2e-09 Score=82.68 Aligned_cols=96 Identities=10% Similarity=0.013 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL 574 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 574 (615)
..+..++..+.+.|++++|++.|++.. .+.+...+..++.++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 345556666777777777777776665 333456677777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhcC
Q 036661 575 GGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 575 ~g~~~~A~~~~~~~~~~~ 592 (615)
.|++++|++.+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 777777777777776644
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.86 E-value=1.6e-08 Score=81.47 Aligned_cols=115 Identities=10% Similarity=-0.024 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC 538 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 538 (615)
..+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|.+.++++. .+.+...+..++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45555666666666666666666666531 12244556666666666666666666666654 233456777777888
Q ss_pred HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661 539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGR 577 (615)
Q Consensus 539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 577 (615)
...|++++|+..++++++.+|+++..+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888877664
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=4.2e-09 Score=97.34 Aligned_cols=192 Identities=12% Similarity=-0.041 Sum_probs=131.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA 469 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 469 (615)
+...+..+...+.+.|++++|...|++... .+...|..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345566777788888888888888887654 366788888888999999999999999888763 3345678888889
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHH
Q 036661 470 CTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
+...|++++|...|+++.+.. |+. ..+...+....+..+...... .......++......+.. + ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 999999999999998887432 221 011111222222211111111 222233334434333333 2 368999999
Q ss_pred HHHHHHhccCCCCCCChHhHHHHHHcc-CChHHHHHHHHHHHhc
Q 036661 549 YVAYRLFELEPHSAAPYVEMANIYALG-GRWDGVANLRTMMKRN 591 (615)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 591 (615)
+.++++++.+|++......+..++.+. +.+++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999887778888888777 7799999999988764
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.85 E-value=1.7e-08 Score=80.88 Aligned_cols=117 Identities=8% Similarity=-0.042 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC 538 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 538 (615)
..+..+...+...|++++|...++++... .+.+...+..++.++...|++++|.+.+++.. .+.+...+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666666777777777777777777643 23345667777777778888888888877765 333466778888888
Q ss_pred HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChH
Q 036661 539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWD 579 (615)
Q Consensus 539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 579 (615)
...|++++|...++++++.+|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999998899999999998888763
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.85 E-value=5.1e-09 Score=82.62 Aligned_cols=96 Identities=10% Similarity=-0.070 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG 575 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 575 (615)
.+..++..+.+.|++++|...++++. .+.+...|..++.++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45567788899999999999999887 3446778888999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCc
Q 036661 576 GRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 576 g~~~~A~~~~~~~~~~~~ 593 (615)
|++++|++.++++.+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887554
No 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.85 E-value=1.2e-08 Score=79.25 Aligned_cols=100 Identities=11% Similarity=0.007 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC--CCCChHhHHH
Q 036661 495 ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH--SAAPYVEMAN 570 (615)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 570 (615)
+...+..++..+.+.|++++|...++++. .+.+...+..++..+...|++++|...++++++.+|+ ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34566678888888888888888888876 3445667888889999999999999999999999999 9999999999
Q ss_pred HHHcc-CChHHHHHHHHHHHhcCcc
Q 036661 571 IYALG-GRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 571 ~~~~~-g~~~~A~~~~~~~~~~~~~ 594 (615)
+|... |++++|.+.+++..+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999877654
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=2.5e-08 Score=79.12 Aligned_cols=115 Identities=15% Similarity=0.198 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH
Q 036661 460 RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 537 (615)
Q Consensus 460 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 537 (615)
...+..+...+...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|..+++++. .+.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666666777777777777777777643 12345566677777777777777777777765 33455677778888
Q ss_pred HHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661 538 CKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG 576 (615)
Q Consensus 538 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 576 (615)
+...|++++|...++++++.+|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888889999999999999888988888888888876554
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=2.8e-08 Score=93.26 Aligned_cols=197 Identities=8% Similarity=-0.042 Sum_probs=151.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661 371 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQ 450 (615)
Q Consensus 371 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 450 (615)
..|++++|.+++++..+... .+ .+...++++.|...|.+ ....|...|++++|...+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 46788899999888776321 11 01115788888887654 46778899999999999998
Q ss_pred HHHcCC---CC-C-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 036661 451 MMELDL---RP-N-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQS 521 (615)
Q Consensus 451 ~~~~~~---~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (615)
..+... .+ . ..++..+..+|...|++++|+..|++...-+.-..+ ..++..++.+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 247888889999999999999999998754221111 3577889999988 999999999998
Q ss_pred CC-CCC---C----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC------ChHhHHHHHHccCChHHHHHHHHH
Q 036661 522 MP-IKS---D----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA------PYVEMANIYALGGRWDGVANLRTM 587 (615)
Q Consensus 522 ~~-~~p---~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 587 (615)
.. ..| + ..++..++..+...|++++|+..+++++++.|++.. .+..++.++...|++++|+..+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 75 111 1 346778889999999999999999999998776543 677788899999999999999999
Q ss_pred HH
Q 036661 588 MK 589 (615)
Q Consensus 588 ~~ 589 (615)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 88
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.82 E-value=4.3e-08 Score=80.28 Aligned_cols=105 Identities=9% Similarity=-0.065 Sum_probs=88.3
Q ss_pred CCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 036661 456 LRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWG 532 (615)
Q Consensus 456 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~ 532 (615)
+.|+. ..+..+...+.+.|++++|...|+++... -+.+...|..++.+|...|++++|++.|+++. .+.++..+.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 35554 46777888999999999999999999853 23356788889999999999999999999987 344567889
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661 533 TLLCACKIHRNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 562 (615)
.++.++...|++++|+..+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999853
No 134
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=1.1e-08 Score=81.61 Aligned_cols=95 Identities=5% Similarity=-0.060 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC-------ChHhH
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA-------PYVEM 568 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l 568 (615)
.+..++..+.+.|++++|++.|+++. .+.+...+..++.++...|++++|+..++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 45567777777777777777777765 3334567777788888888888888888888888877654 45667
Q ss_pred HHHHHccCChHHHHHHHHHHHhcC
Q 036661 569 ANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
|.+|...|++++|++.|++.++..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777788888888888888877644
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=1.5e-06 Score=80.10 Aligned_cols=226 Identities=8% Similarity=-0.044 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhcccc--hhhHHHHHHHHHHhcCCCCchHHHHHHHHHH----Hhc---CC
Q 036661 340 LDEALRLFFAMEAAGEVPDLV-TVLSMISGCGQSG--ALELGKWFDNYACSGGLKDNVMVCNALIDMY----SKC---GS 409 (615)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 409 (615)
.++|+.+++.++.. .|+.. .++.--..+...+ +++++...++.+...+ +-+..+++.-...+ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 35677777666664 23332 3333333344444 6777777777766654 33333443333333 333 67
Q ss_pred hHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc------hHH
Q 036661 410 IGDARELFYALPE---KTVVSWTTMIAGCALNGEFV--EALDLFHQMMELDLRPNRVTFLAVLQACTHAGF------LEK 478 (615)
Q Consensus 410 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~~ 478 (615)
+++++++++.+.+ .|..+|+--..++.+.+.++ +++++++++++.+ .-|...|+.-...+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888887765 46678888777888888888 9999999999975 4466777777776777666 889
Q ss_pred HHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhCC-C----CCChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661 479 GWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE-ALDFVQSMP-I----KSDAGIWGTLLCACKIHRNIEIGEYVAY 552 (615)
Q Consensus 479 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 552 (615)
+++.++++... .+-+...|+.+..++.+.|+..+ +.++.+++. . ..+...+..++..+.+.|+.++|+++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999998853 34456788888888988888655 556777765 2 3356788888899999999999999999
Q ss_pred HHhc-cCCCCCCChHhHHHH
Q 036661 553 RLFE-LEPHSAAPYVEMANI 571 (615)
Q Consensus 553 ~~~~-~~p~~~~~~~~l~~~ 571 (615)
.+.+ .+|-....|...+..
T Consensus 283 ~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHHT
T ss_pred HHHhccChHHHHHHHHHHhh
Confidence 9996 899877777766543
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=6.1e-09 Score=85.62 Aligned_cols=116 Identities=8% Similarity=-0.024 Sum_probs=89.5
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 036661 448 FHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--I 524 (615)
Q Consensus 448 ~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 524 (615)
++++.+. .|+. ..+..+...+...|++++|...|+++... -+.+...|..++.+|...|++++|++.|+++. .
T Consensus 10 ~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444443 4543 46677777888889999999999888753 23356677888888999999999999998876 3
Q ss_pred CCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh
Q 036661 525 KSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE 567 (615)
Q Consensus 525 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 567 (615)
+.+...+..++.++...|++++|+..++++++++|+++.....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 3456688888899999999999999999999999987766443
No 137
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=2.7e-07 Score=81.06 Aligned_cols=172 Identities=6% Similarity=-0.080 Sum_probs=126.0
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-CChHHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 036661 378 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-KTVVSWTTMIAGCALNG----EFVEALDLFHQMM 452 (615)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 452 (615)
|.+.|+...+.| ++..+..+...|...+++++|.+.|++..+ .++..+..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 455666677777777788888877776554 456677777777776 5 8889999999887
Q ss_pred HcCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHh
Q 036661 453 ELDLRPNRVTFLAVLQACTH----AGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGR----KGKLKEALDFVQS 521 (615)
Q Consensus 453 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 521 (615)
+.| +...+..|...|.. .+++++|..+|++..+ ..|+ ...+..|..+|.. .+++++|+.+|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 55667777777776 7889999999998874 3443 6677788888888 7889999999988
Q ss_pred CC-CCCChhhHHHHHHHHHHh-C-----ChhHHHHHHHHHhccCC
Q 036661 522 MP-IKSDAGIWGTLLCACKIH-R-----NIEIGEYVAYRLFELEP 559 (615)
Q Consensus 522 ~~-~~p~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 559 (615)
.. ...+......+...|... | +.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 86 334556677777777653 3 89999999999987754
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.79 E-value=1.5e-08 Score=85.13 Aligned_cols=111 Identities=10% Similarity=-0.044 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 036661 459 NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLC 536 (615)
Q Consensus 459 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 536 (615)
+...+..+...+...|++++|+..|++..+. .+.+...+..++.+|.+.|++++|+..+++.. .+.+...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3457888888999999999999999999853 23356788889999999999999999999987 3445678888999
Q ss_pred HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
++...|++++|+..++++++++|+++..|...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998866655543
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=4.2e-08 Score=88.11 Aligned_cols=125 Identities=11% Similarity=-0.066 Sum_probs=61.2
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh----hhHHHHHHHHHHh
Q 036661 466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDA----GIWGTLLCACKIH 541 (615)
Q Consensus 466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 541 (615)
+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34445555555555555555442 1232223334444555555555555555544422211 2344455555555
Q ss_pred CChhHHHHHHHHHhccC--CC-CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 542 RNIEIGEYVAYRLFELE--PH-SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 542 ~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
|++++|+..|+++..-. |. .+..+..++.++.+.|+.++|...|+++....+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55555555555555322 22 223445555555555555555555555555443
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=3.4e-08 Score=80.03 Aligned_cols=97 Identities=11% Similarity=-0.115 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
...+..++..+...|++++|...|++.. .+.+...+..++.++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 4445555555555555555555555544 22234455556666666666666666666666666666666666666666
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 036661 574 LGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 574 ~~g~~~~A~~~~~~~~~~~ 592 (615)
..|++++|++.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHC
Confidence 6666666666666665543
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=7.3e-08 Score=82.14 Aligned_cols=124 Identities=6% Similarity=0.011 Sum_probs=99.7
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH-HHHhCCh--
Q 036661 470 CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA-CKIHRNI-- 544 (615)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~-~~~~~~~-- 544 (615)
+...|++++|...+++..+. .+.+...+..++.+|...|++++|...++++. .+.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678899999999988753 23456788889999999999999999999886 33456677778888 7788998
Q ss_pred hHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661 545 EIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKK 595 (615)
Q Consensus 545 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 595 (615)
++|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999998876543
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=4.6e-08 Score=85.16 Aligned_cols=97 Identities=11% Similarity=-0.062 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL 574 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 574 (615)
..+..++.+|.+.|++++|+..++++. .+.+...+..++.++...|++++|+..++++++++|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 566778888888899999988888876 344567888899999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhcCc
Q 036661 575 GGRWDGVA-NLRTMMKRNQV 593 (615)
Q Consensus 575 ~g~~~~A~-~~~~~~~~~~~ 593 (615)
.|+.+++. ..++.+...+.
T Consensus 169 ~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 99988888 66666655443
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=4.1e-07 Score=84.72 Aligned_cols=162 Identities=12% Similarity=-0.002 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CCh------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 036661 396 VCNALIDMYSKCGSIGDARELFYALPE---KTV------VSWTTMIAGCALNGEFVEALDLFHQMMELDL---RPN--RV 461 (615)
Q Consensus 396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~ 461 (615)
.+...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778888999999888864332 111 2344466667788899999999999886321 222 34
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-------Ch
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-------DA 528 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~ 528 (615)
+++.+...|...|++++|..+++++.+.....|+ ..++..++.+|.+.|++++|.+.+++.. ..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998743222232 2578889999999999999999998875 111 14
Q ss_pred hhHHHHHHHHHHhCChhHH-HHHHHHHhcc
Q 036661 529 GIWGTLLCACKIHRNIEIG-EYVAYRLFEL 557 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 557 (615)
.++..++.++...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5778888999999999999 8889988753
No 144
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=8.6e-07 Score=88.54 Aligned_cols=375 Identities=8% Similarity=-0.088 Sum_probs=225.4
Q ss_pred hcC-ChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCC-hhhHHH
Q 036661 167 HAK-HLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDK-FDDSLN 244 (615)
Q Consensus 167 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~ 244 (615)
+.| +++.|..+++.+++.- |. |+++.+..+|++.....|+...|...+....+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 4778888888777642 22 89999999999998888999999999887776653 456777
Q ss_pred HHHHHHHC-CCCC-CHHhHHHHHHhccC----chhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036661 245 FYRHMIYD-GFRP-DVTTVVSLLSSCVC----PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDG 318 (615)
Q Consensus 245 ~~~~m~~~-~~~p-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 318 (615)
+|+..+.. |..| +...|...+..+.. .++.+.+..+|+..+......-...+...... .+......+.+++..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH
Confidence 78877654 4333 55667777665542 46788899999998873211111122211111 111122223222221
Q ss_pred cCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhccc----c---hhhHHHHHHHHHHhcCCC
Q 036661 319 MCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQS----G---ALELGKWFDNYACSGGLK 391 (615)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~---~~~~a~~~~~~~~~~~~~ 391 (615)
.. +.+..|..+++++...-...+...|...+.--... . ..+.+..+++.+.... +
T Consensus 149 ---------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p 210 (493)
T 2uy1_A 149 ---------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y 210 (493)
T ss_dssp ---------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred ---------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence 11 12334444444443210011233444433332111 1 1355677888887754 5
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhcCCC-C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCCC-
Q 036661 392 DNVMVCNALIDMYSKCGSIGDARELFYALPE-K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELD---------LRPN- 459 (615)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~p~- 459 (615)
.+..++...+..+.+.|+.+.|..++++... | +...|. .|....+.++. ++.+.+.- ..+.
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhccc
Confidence 5678888888888999999999999986544 2 222222 22222222222 33333210 0111
Q ss_pred --HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCChhhHHHH
Q 036661 460 --RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG-KLKEALDFVQSMP--IKSDAGIWGTL 534 (615)
Q Consensus 460 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~p~~~~~~~l 534 (615)
...|...+....+.+..+.|..+|+++ +. ...+..+|...+..-.+.| +.+.|..+|+... .+.++..|...
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y 360 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 235666666666778899999999998 32 1234455554444444444 6999999998876 32234566667
Q ss_pred HHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 535 LCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 535 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
+......|+.+.|..+++++. .+...|...+..-...|+.+.+.+++++..+
T Consensus 361 id~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777778999999999999983 3456777888878888999999999888875
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=5.8e-08 Score=76.07 Aligned_cols=109 Identities=10% Similarity=0.013 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC 538 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 538 (615)
..+..+...+...|++++|...+++.... .+.+...+..++.++...|++++|...+++.. .+.+...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555555555555555555532 12233444455555555555555555555543 222334444455555
Q ss_pred HHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
...|++++|...++++++.+|+++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 555555555555555555555554444444433
No 146
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=1.5e-06 Score=80.82 Aligned_cols=159 Identities=11% Similarity=-0.027 Sum_probs=120.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---Ch------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 036661 399 ALIDMYSKCGSIGDARELFYALPEK---TV------VSWTTMIAGCALNGEFVEALDLFHQMMELDLR-PN----RVTFL 464 (615)
Q Consensus 399 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~ 464 (615)
..+..+...|++++|.+.+++.... +. ..+..+...+...+++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788899999999999876541 11 13334666777788999999999999984322 22 23688
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCC----CC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-hhhH
Q 036661 465 AVLQACTHAGFLEKGWGYFNLMTKVYQVN----PE-LNHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIW 531 (615)
Q Consensus 465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~ 531 (615)
.+..+|...|++++|..+++++.+...-. +. ..++..++.+|.+.|++++|.+.+++.. ..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999988532211 11 2477889999999999999999998875 1112 4578
Q ss_pred HHHHHHHHHhCC-hhHHHHHHHHHhcc
Q 036661 532 GTLLCACKIHRN-IEIGEYVAYRLFEL 557 (615)
Q Consensus 532 ~~l~~~~~~~~~-~~~A~~~~~~~~~~ 557 (615)
..++.++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888899999995 69999999999864
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=2.1e-08 Score=81.81 Aligned_cols=109 Identities=11% Similarity=-0.048 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC 538 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 538 (615)
..+..+...+...|++++|...|+++... -+.+...|..++.+|.+.|++++|+..|+++. .+.+...+..++.++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 35556667777888888888888887743 23345667778888888888888888888876 333556778888889
Q ss_pred HHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
...|++++|+..++++++++|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999887765554433
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.71 E-value=3e-07 Score=80.29 Aligned_cols=129 Identities=5% Similarity=-0.049 Sum_probs=58.1
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhC---CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-C----h
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQ---VNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP----IKS-D----A 528 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~----~ 528 (615)
.+..+...+...|++++|...+++...... ..| ....+..++.++...|++++|.+.+++.. ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 444444444444444444444444432111 011 12234444444555555555544444432 011 1 1
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
..+..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 233444455555555555555555555432211 11234556666666666666666655543
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=1.5e-07 Score=73.72 Aligned_cols=98 Identities=10% Similarity=0.082 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
...+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4456677888888888888888888876 33456677788888888888888888888888888888888888888888
Q ss_pred ccCChHHHHHHHHHHHhcCc
Q 036661 574 LGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 574 ~~g~~~~A~~~~~~~~~~~~ 593 (615)
..|++++|.+.+++..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 88888888888888877654
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=9.6e-08 Score=85.76 Aligned_cols=136 Identities=10% Similarity=-0.065 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--hhHHHHHHHHH
Q 036661 429 TTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE--LNHYSCMADLL 506 (615)
Q Consensus 429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 506 (615)
-.+...+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 33445556666666666666666553 344334444445666777777777777644321 0 111 23455667777
Q ss_pred HhcCChHHHHHHHHhCCCC---CC--hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661 507 GRKGKLKEALDFVQSMPIK---SD--AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA 569 (615)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 569 (615)
.+.|++++|++.|++.... |. ...+..+..++.+.|+.++|...|++++..+|+ +.++..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 7777777777777776411 32 235566777777888888888888888888887 55555543
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=6.1e-08 Score=77.92 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=89.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661 494 PELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI 571 (615)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 571 (615)
.+...+..++..+.+.|++++|.+.+++.. ..| +...+..++..+...|++++|+..++++++.+|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345678889999999999999999999976 344 667888899999999999999999999999999999999999999
Q ss_pred HHccCChHHHHHHHHHHHhcCc
Q 036661 572 YALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 572 ~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
|...|++++|.+.+++..+...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999987654
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.67 E-value=4.1e-08 Score=79.30 Aligned_cols=62 Identities=11% Similarity=-0.096 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhcc-------CCCCCCCh----HhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFEL-------EPHSAAPY----VEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
.|..+..++...|++++|+..+++++++ +|+++..| +.+|.+|...|++++|++.|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666777777777777777777777777 77777777 77788888888888888877777653
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.4e-07 Score=76.04 Aligned_cols=111 Identities=10% Similarity=-0.086 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 036661 460 RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGT 533 (615)
Q Consensus 460 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 533 (615)
...+..+...+...|++++|...|++.. ...|+ ...+..++.+|...|++++|.+.+++.. .+.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555566666666666666555 22343 3455556666666666666666666554 2224456666
Q ss_pred HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
++.++...|++++|...++++++++|+++..+..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 6777777777777777777777777777666666655543
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=9.8e-08 Score=75.97 Aligned_cols=111 Identities=8% Similarity=-0.153 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC 538 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 538 (615)
..+..+...+.+.|++++|+..|++..+. .+.+...+..++.+|.+.|++++|+..+++.. .+.+...+..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555666677777777777777777642 22345667777777777777777777777765 333456777888888
Q ss_pred HHhCChhHHHHHHHHHhccC------CCCCCChHhHHHHHH
Q 036661 539 KIHRNIEIGEYVAYRLFELE------PHSAAPYVEMANIYA 573 (615)
Q Consensus 539 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 573 (615)
...|++++|+..++++++++ |+++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888899999999888888 777666666665543
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=1.7e-07 Score=78.66 Aligned_cols=95 Identities=17% Similarity=0.069 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 036661 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL 505 (615)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 505 (615)
..|..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|+..++++.+. .+.+...+..++.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 445555555666666666666666665542 223445555555666666666666666665532 12224455555666
Q ss_pred HHhcCChHHHHHHHHhCC
Q 036661 506 LGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~ 523 (615)
|...|++++|.+.|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 666666666666665554
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.65 E-value=1.8e-07 Score=92.92 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
...|..++.+|.+.|++++|+..++++. .+.+...+..++.++...|++++|+..++++++++|+++.++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3567788899999999999999998887 44456788899999999999999999999999999999999999999999
Q ss_pred ccCChHHHHH-HHHHHHhc
Q 036661 574 LGGRWDGVAN-LRTMMKRN 591 (615)
Q Consensus 574 ~~g~~~~A~~-~~~~~~~~ 591 (615)
+.|++++|.+ .+++|.++
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998874 45555443
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=1.1e-07 Score=75.39 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4677888999999999999999999986 44456788889999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhcCc
Q 036661 574 LGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 574 ~~g~~~~A~~~~~~~~~~~~ 593 (615)
..|++++|.+.++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987654
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.64 E-value=7.4e-08 Score=77.03 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=44.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCCh----hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC---CCChHhHHHHHH
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS---AAPYVEMANIYA 573 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 573 (615)
++..+...|++++|.+.|+++. ..|+. ..+..++.++...|++++|+..++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3344444455555555544443 12221 244444455555555555555555555555555 344555555555
Q ss_pred ccCChHHHHHHHHHHHhc
Q 036661 574 LGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 574 ~~g~~~~A~~~~~~~~~~ 591 (615)
..|++++|.+.++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555443
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.4e-07 Score=77.52 Aligned_cols=99 Identities=11% Similarity=-0.013 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661 495 ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA 569 (615)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 569 (615)
+...+..++..+...|++++|.+.|++.. ..|+ ...+..+..++...|++++|+..++++++.+|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 45678889999999999999999999986 5666 567888889999999999999999999999999999999999
Q ss_pred HHHHccCChHHHHHHHHHHHhcCc
Q 036661 570 NIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 570 ~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.+|...|++++|.+.+++..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999987654
No 160
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.63 E-value=8e-08 Score=91.29 Aligned_cols=151 Identities=7% Similarity=-0.081 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661 425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD 504 (615)
Q Consensus 425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 504 (615)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345667777777888888888888888775 454432 23334444443222 1 136778999
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH-HccCChHHH
Q 036661 505 LLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY-ALGGRWDGV 581 (615)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 581 (615)
+|.+.|++++|+..++++. .+.+...+..++.++...|++++|+..++++++++|+++.++..++.+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 3445678899999999999999999999999999999999999999884 456778889
Q ss_pred HHHHHHHHhcCccc
Q 036661 582 ANLRTMMKRNQVKK 595 (615)
Q Consensus 582 ~~~~~~~~~~~~~~ 595 (615)
.+.|++|.+..+..
T Consensus 319 ~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 319 KEMYKGIFKGKDEG 332 (338)
T ss_dssp --------------
T ss_pred HHHHHHhhCCCCCC
Confidence 99999988766543
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=3e-07 Score=80.26 Aligned_cols=154 Identities=14% Similarity=0.013 Sum_probs=104.0
Q ss_pred HhcCChHHHHH---HHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHhhccCch
Q 036661 405 SKCGSIGDARE---LFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMME----LDLRPN-RVTFLAVLQACTHAGFL 476 (615)
Q Consensus 405 ~~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~ 476 (615)
...|++++|.+ .+..-......++..+...+...|++++|...+++..+ .+..|. ..++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34567777777 55443333456777778888888888888888887766 121222 24677777788888888
Q ss_pred HHHHHHHHHHHHhhCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHHhCC
Q 036661 477 EKGWGYFNLMTKVYQVNP-E----LNHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHRN 543 (615)
Q Consensus 477 ~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~ 543 (615)
++|...+++......-.+ + ...+..++.++...|++++|...+++.. ..++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 888888888765422222 2 2456778888888899998888887764 1112 1234667788888999
Q ss_pred hhHHHHHHHHHhccC
Q 036661 544 IEIGEYVAYRLFELE 558 (615)
Q Consensus 544 ~~~A~~~~~~~~~~~ 558 (615)
+++|...+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888654
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.61 E-value=1.7e-07 Score=74.95 Aligned_cols=99 Identities=10% Similarity=-0.017 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661 495 ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY 572 (615)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 572 (615)
+...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++.+|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34567788899999999999999999986 4446678888999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhcCc
Q 036661 573 ALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 573 ~~~g~~~~A~~~~~~~~~~~~ 593 (615)
...|++++|.+.+++..+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999987654
No 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=9.8e-07 Score=73.95 Aligned_cols=129 Identities=13% Similarity=0.041 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 036661 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL 505 (615)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 505 (615)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456777888888999999999999988863 345678888888899999999999999998853 23456778888899
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-ChhhHHH--HHHHHHHhCChhHHHHHHHHHhcc
Q 036661 506 LGRKGKLKEALDFVQSMP-IKS-DAGIWGT--LLCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
+...|++++|.+.++++. ..| +...+.. .+..+...|++++|...+++..++
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999998876 333 4444433 334467789999999998877553
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.56 E-value=3.2e-06 Score=78.68 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=27.2
Q ss_pred CCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 559 PHSAAPYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 559 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
+.++.++..|+++|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45667788899999999999999999999864
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=3.1e-07 Score=74.27 Aligned_cols=101 Identities=8% Similarity=-0.146 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHH
Q 036661 458 PNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLL 535 (615)
Q Consensus 458 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 535 (615)
.+...+..+...+...|++++|...|++.... .+.+...+..++.++...|++++|...+++.. .+.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34566667777777777777777777777643 12335667777777777777777777777765 333456777788
Q ss_pred HHHHHhCChhHHHHHHHHHhccCCC
Q 036661 536 CACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 536 ~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
.++...|++++|+..++++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888888887
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.52 E-value=1.7e-07 Score=78.45 Aligned_cols=102 Identities=11% Similarity=-0.030 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhC----------------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ----------------VNPELNHYSCMADLLGRKGKLKEALDFVQSMP- 523 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 523 (615)
..+......+.+.|++++|+..|.+...... .+.....|..++.+|.+.|++++|+..++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4566667777777888888888777764210 01112344445555555555555555555544
Q ss_pred -CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661 524 -IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 524 -~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 562 (615)
.+.+...+..++.++...|++++|...++++++++|+++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 222334455555555555555555555555555555544
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=5.5e-06 Score=76.72 Aligned_cols=166 Identities=13% Similarity=0.044 Sum_probs=90.4
Q ss_pred ChHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc-hHHHHHHHHHHHHhhCCCCChhHHH
Q 036661 424 TVVSWTTMIAGCALNG--EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF-LEKGWGYFNLMTKVYQVNPELNHYS 500 (615)
Q Consensus 424 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 500 (615)
+..+|+.-..++...+ ++++++.+++++.+.. +-|...|+.-..++...|. ++++++.++++.+. -+-+...|+
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~ 183 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWH 183 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 4445555555555544 3566666666666653 3344555555555555555 46666666666642 123344455
Q ss_pred HHHHHHHhc--------------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh-----------CChhHHHHHHHH
Q 036661 501 CMADLLGRK--------------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH-----------RNIEIGEYVAYR 553 (615)
Q Consensus 501 ~l~~~~~~~--------------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~ 553 (615)
....++.+. +.++++++.+.+.. .+-|...|..+...+... +.++++++.+++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 444444433 34566666666655 333455555444444333 346777777788
Q ss_pred HhccCCCCCCChHhHHHHH---HccCChHHHHHHHHHHHhcC
Q 036661 554 LFELEPHSAAPYVEMANIY---ALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 554 ~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 592 (615)
+++++|++..++..++.+. ...|..++....+.++.+-.
T Consensus 264 lle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 264 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 8888887644433333221 13566777777777776544
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.51 E-value=3.5e-08 Score=77.37 Aligned_cols=89 Identities=8% Similarity=0.044 Sum_probs=40.6
Q ss_pred cCchHHHHHHHHHHHHhhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661 473 AGFLEKGWGYFNLMTKVYQ--VNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 473 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
.|++++|+..|+++.+. + -+.+...+..++.+|...|++++|.+.++++. .+.+...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555566666655521 1 01122344445555555555555555555543 2222334444455555555555555
Q ss_pred HHHHHHhccCCCCC
Q 036661 549 YVAYRLFELEPHSA 562 (615)
Q Consensus 549 ~~~~~~~~~~p~~~ 562 (615)
..++++++..|+++
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 55555555555443
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=4.4e-07 Score=83.71 Aligned_cols=114 Identities=6% Similarity=-0.156 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHH
Q 036661 459 NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLC 536 (615)
Q Consensus 459 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 536 (615)
+...+..+...+...|++++|...|+++.+. .+.+...+..++.+|.+.|++++|.+.++++. ..| +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567777888888999999999999988853 22356778888899999999999999998876 444 4567788888
Q ss_pred HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661 537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL 574 (615)
Q Consensus 537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 574 (615)
++...|++++|+..++++++++|+++..+...++...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 118 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence 88899999999999999999998887776666655553
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.50 E-value=1.9e-07 Score=93.17 Aligned_cols=119 Identities=7% Similarity=-0.057 Sum_probs=93.2
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCC
Q 036661 466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRN 543 (615)
Q Consensus 466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~ 543 (615)
+...+.+.|++++|.+.++++.+. .+.+...+..++.+|.+.|++++|++.++++. ..| +...+..++.++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566778888888888888753 22346678888888888888888888888876 444 46678888899999999
Q ss_pred hhHHHHHHHHHhccCCCCCCChHhHHHH--HHccCChHHHHHHHH
Q 036661 544 IEIGEYVAYRLFELEPHSAAPYVEMANI--YALGGRWDGVANLRT 586 (615)
Q Consensus 544 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 586 (615)
+++|++.++++++++|+++..+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888 888899999999987
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=2.3e-07 Score=74.18 Aligned_cols=109 Identities=5% Similarity=-0.005 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCC----hhhH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I----KSD----AGIW 531 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~~ 531 (615)
..+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|...++++. . .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555666666666777777666666642 12344555566666666666666666666554 1 111 3445
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661 532 GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY 572 (615)
Q Consensus 532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 572 (615)
..++.++...|++++|...++++++..| ++.....++.++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 5555666666666666666666666655 555555544443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.49 E-value=6.3e-07 Score=70.45 Aligned_cols=98 Identities=8% Similarity=-0.024 Sum_probs=67.8
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHH
Q 036661 463 FLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKI 540 (615)
Q Consensus 463 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 540 (615)
+..+...+.+.|++++|+..++++.+. .+.+...+..++.++...|++++|+..+++.. ..| +...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556667777888888887777743 22345667777777888888888888887775 333 45677788888888
Q ss_pred hCChhHHHHHHHHHhccCCCCC
Q 036661 541 HRNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 541 ~~~~~~A~~~~~~~~~~~p~~~ 562 (615)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8999999999999999888754
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=5.5e-08 Score=84.65 Aligned_cols=97 Identities=6% Similarity=-0.056 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C----------------hhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP-IKS-D----------------AGIWGTLLCACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
..+..++..+.+.|++++|.+.|++.. ..| + ...+..++.++...|++++|+..++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 345566777777777777777777664 222 2 2577888899999999999999999999999
Q ss_pred CCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 559 PHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 559 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
|+++.++..++.+|...|++++|++.+++..+..+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999987654
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=7.9e-05 Score=69.34 Aligned_cols=232 Identities=12% Similarity=-0.005 Sum_probs=154.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccc-hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-C-ChH
Q 036661 335 AQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC-G-SIG 411 (615)
Q Consensus 335 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 411 (615)
.+.+..++|++++++++..+ +-+...++.--..+...| .++++..+++.+.... +-+..+++.-..++.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 33444567788777777653 223333443333344445 4777888888777765 45566666655555555 5 788
Q ss_pred HHHHHHhcCCC---CChHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc-----
Q 036661 412 DARELFYALPE---KTVVSWTTMIAGCALNGEFV--------EALDLFHQMMELDLRPNRVTFLAVLQACTHAGF----- 475 (615)
Q Consensus 412 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----- 475 (615)
+++++++.+.+ .|..+|+--..++.+.+.++ ++++.++++++.+ .-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 88888888776 35567766666665555555 8999999999874 4466788888777777775
Q ss_pred --hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhCC-C-------C
Q 036661 476 --LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKL--------------------KEALDFVQSMP-I-------K 525 (615)
Q Consensus 476 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~-------~ 525 (615)
++++++.++++... .+-+...|+-+-..+.+.|+. .+..++..++. . .
T Consensus 222 ~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 68888888888843 234556777777777777664 34455555554 1 2
Q ss_pred CChhhHHHHHHHHHHhCChhHHHHHHHHHh-ccCCCCCCChHhHHHH
Q 036661 526 SDAGIWGTLLCACKIHRNIEIGEYVAYRLF-ELEPHSAAPYVEMANI 571 (615)
Q Consensus 526 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~ 571 (615)
+....+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 456678888899999999999999999997 7788766666555443
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.47 E-value=3.9e-07 Score=73.63 Aligned_cols=106 Identities=12% Similarity=0.012 Sum_probs=77.6
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhCC-C-----
Q 036661 464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-------------LNHYSCMADLLGRKGKLKEALDFVQSMP-I----- 524 (615)
Q Consensus 464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----- 524 (615)
......+.+.|++++|+..|++..+- .|+ ...|..++.++.+.|++++|+..+++.. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 33444555566666666666665532 222 2267777888888888888888877765 4
Q ss_pred --CCCh-hhH----HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661 525 --KSDA-GIW----GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY 572 (615)
Q Consensus 525 --~p~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 572 (615)
.|+. ..| ...+.++...|++++|+..|+++++++|++...+..+..+-
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 7764 477 88999999999999999999999999999988887775543
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=4.5e-07 Score=75.63 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC------CCC
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH------SAA 563 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~ 563 (615)
.+..++..+...|++++|.+.+++.. ..++ ...+..++..+...|++++|...++++++..+. .+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34445555555555555555555442 0011 234455666666777777777777777654322 134
Q ss_pred ChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 564 PYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 564 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677788888888888888888887765
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=3.8e-07 Score=76.25 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=52.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-C------------------CCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 501 CMADLLGRKGKLKEALDFVQSMP-I------------------KSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~-~------------------~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
..+..+.+.|++++|+..|++.. . .|. ...+..++.++.+.|++++|+..++++++++|+
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 34555556666666666665543 1 111 134555555566666666666666666666666
Q ss_pred CCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 561 SAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 561 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
++.+|..+|.+|...|++++|.+.+++..+..
T Consensus 96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666655543
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2e-06 Score=85.24 Aligned_cols=164 Identities=9% Similarity=-0.123 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhh---CCCCC-hh
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNR----VTFLAVLQACTHAGFLEKGWGYFNLMTKVY---QVNPE-LN 497 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~ 497 (615)
++..++..|...|++++|.+.+.++...- -.++. .+.+.+...+...|+++.+..+++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35677888888888888888888776521 11222 123334445566788999998888776422 22222 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC-------C
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS-------A 562 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~ 562 (615)
++..++..|...|++++|..++++.. .++. ..++..++..|...|++++|...+++++...|.. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 67788999999999999999988763 1221 3467778888999999999999999988765332 2
Q ss_pred CChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 563 APYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
..+..++.++...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566678888899999999998887765
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=1.6e-06 Score=69.09 Aligned_cols=102 Identities=13% Similarity=0.007 Sum_probs=67.8
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHH
Q 036661 466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPE-L---NHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLC 536 (615)
Q Consensus 466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 536 (615)
+...+...|++++|...|+++.+. .|+ . ..+..++.++.+.|++++|...++++. ..|+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 445566667777777777776643 222 2 355566777777777777777777665 2232 445667777
Q ss_pred HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHH
Q 036661 537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMAN 570 (615)
Q Consensus 537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 570 (615)
++...|++++|...++++++..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8888888888888888888888886655444433
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.41 E-value=1.3e-06 Score=67.47 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---ChhhHHHHHH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS---DAGIWGTLLC 536 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~ 536 (615)
..+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.+++.. ..| +...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455556666666666666666666642 12334556666667777777777777776664 333 3556677777
Q ss_pred HHHHh-CChhHHHHHHHHHhccCCCCC
Q 036661 537 ACKIH-RNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 537 ~~~~~-~~~~~A~~~~~~~~~~~p~~~ 562 (615)
++... |++++|.+.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 888888888888887777654
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=6.4e-07 Score=71.49 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCC-CCC----hhHHHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV-NPE----LNHYSC 501 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~ 501 (615)
.|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.....- .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45555566666666666666666666542 334455555566666666666666666665533111 111 445555
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHH
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTL 534 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 534 (615)
++.++...|++++|.+.++++. ..|+...+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 118 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666666666666554 33444333333
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.40 E-value=7e-08 Score=74.76 Aligned_cols=94 Identities=6% Similarity=-0.061 Sum_probs=78.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChH
Q 036661 495 ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYV 566 (615)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 566 (615)
+...+..++..+.+.|++++|.+.+++.. .+.+...+..++.++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 44567778888888888888888888876 34456788888999999999999999999999999998 77888
Q ss_pred hHHHHHHccCChHHHHHHHHHH
Q 036661 567 EMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 567 ~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
.++.++...|++++|.+.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8899999999888887766544
No 183
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=3.8e-06 Score=79.61 Aligned_cols=128 Identities=9% Similarity=-0.033 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 036661 425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN----------------RVTFLAVLQACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 488 (615)
...|..+...+.+.|++++|+..|++.++.. |+ ...+..+..+|.+.|++++|+..++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777778888888888888888888763 33 46788888888889999999999988885
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHH-HHHHHHHhc
Q 036661 489 VYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIG-EYVAYRLFE 556 (615)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 556 (615)
. .+.+...+..++.+|...|++++|...|+++. ..| +...+..+..++...|+.++| ...+++++.
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23356778888888999999999999988876 334 456777888888888888888 456666654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.38 E-value=8.5e-07 Score=85.10 Aligned_cols=89 Identities=9% Similarity=-0.050 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
...|..++.+|.+.|++++|++.++++. ..| +...+..++.++...|++++|+..++++++++|+++.++..++.++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678888999999999999999999886 444 56688889999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHH
Q 036661 574 LGGRWDGVANL 584 (615)
Q Consensus 574 ~~g~~~~A~~~ 584 (615)
..++++++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.38 E-value=1.2e-06 Score=87.43 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=72.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 036661 434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLK 513 (615)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (615)
.+.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++|++.++++.+. .+.+...+..++.+|.+.|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3445667777777777766652 223456666666777777777777777776632 2223456666677777777777
Q ss_pred HHHHHHHhCC-CCC-ChhhHHHHHHH--HHHhCChhHHHHHHH-----------HHhccCCCC
Q 036661 514 EALDFVQSMP-IKS-DAGIWGTLLCA--CKIHRNIEIGEYVAY-----------RLFELEPHS 561 (615)
Q Consensus 514 ~A~~~~~~~~-~~p-~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~~~~~~p~~ 561 (615)
+|.+.++++. ..| +...+..+..+ +...|++++|++.++ ++++++|+.
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 7777776664 222 23344444444 566677777777777 666666553
No 186
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=5.3e-06 Score=65.76 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555666666666666666666542 2233455555566666666666666666555
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=3.7e-07 Score=71.40 Aligned_cols=86 Identities=16% Similarity=0.041 Sum_probs=63.9
Q ss_pred hcCChHHHHHHHHhCC-C---CCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHH
Q 036661 508 RKGKLKEALDFVQSMP-I---KSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVA 582 (615)
Q Consensus 508 ~~g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 582 (615)
..|++++|+..|++.. . .|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.+|...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3577888888888776 3 243 3467777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCc
Q 036661 583 NLRTMMKRNQV 593 (615)
Q Consensus 583 ~~~~~~~~~~~ 593 (615)
+.+++..+..+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88888776543
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.37 E-value=1.1e-05 Score=81.94 Aligned_cols=169 Identities=8% Similarity=0.016 Sum_probs=135.9
Q ss_pred ChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-
Q 036661 409 SIGDARELFYALPE---KTVVSWTTMIAGCALNGE----------FVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG- 474 (615)
Q Consensus 409 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 474 (615)
..++|.+.++.+.. .+..+|+.-..++...++ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34667777777665 345677776666666666 899999999999873 445678888888888888
Q ss_pred -chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHh---------
Q 036661 475 -FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG-KLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH--------- 541 (615)
Q Consensus 475 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~--------- 541 (615)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++. ..| +..+|......+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999963 2445678888888888889 8999999999987 444 677888887776653
Q ss_pred -----CChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHH
Q 036661 542 -----RNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDG 580 (615)
Q Consensus 542 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 580 (615)
+.++++.+.++++++.+|++..+|..+.+++.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=6.1e-05 Score=69.75 Aligned_cols=193 Identities=12% Similarity=0.022 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCC-hHHHHHHH
Q 036661 375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG--SIGDARELFYALPE---KTVVSWTTMIAGCALNGE-FVEALDLF 448 (615)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 448 (615)
++.+..+++.+.... +-+..+++.-.-++.+.+ .++++..+++.+.+ .|..+|+--..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566677777776655 455666666555566666 47888888887765 466778777777777787 58899999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcc--------------CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc-----
Q 036661 449 HQMMELDLRPNRVTFLAVLQACTHA--------------GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK----- 509 (615)
Q Consensus 449 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 509 (615)
+++++.. +-|...|+.....+... +.++++++.+...... .+-+...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 9998874 34556666655544433 4578888888888742 234455666555555544
Q ss_pred ------CChHHHHHHHHhCC-CCCChhhHHHHHHHH-----HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661 510 ------GKLKEALDFVQSMP-IKSDAGIWGTLLCAC-----KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY 572 (615)
Q Consensus 510 ------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 572 (615)
+.++++++.++++. ..|+. .|..+..+. ...|..++....+.++.+++|.....|..+..-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 45788888888887 56664 343322222 2357788999999999999998766666665443
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.31 E-value=2.5e-07 Score=74.59 Aligned_cols=84 Identities=10% Similarity=-0.073 Sum_probs=51.4
Q ss_pred CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCC----------hhHHHHHHHHHhccCCCCCCChHhHHHHHHccC-
Q 036661 510 GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRN----------IEIGEYVAYRLFELEPHSAAPYVEMANIYALGG- 576 (615)
Q Consensus 510 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 576 (615)
+.+++|++.+++.. .+.+...|..+..++...++ +++|+..++++++++|+++.+|..+|.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 34444544444443 22233444444444444433 457777777777777777777777777777664
Q ss_pred ----------ChHHHHHHHHHHHhcCc
Q 036661 577 ----------RWDGVANLRTMMKRNQV 593 (615)
Q Consensus 577 ----------~~~~A~~~~~~~~~~~~ 593 (615)
++++|++.|++..+..+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 67777777777776554
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.29 E-value=1.9e-06 Score=64.91 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661 527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ 592 (615)
Q Consensus 527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 592 (615)
+...+..++.++...|++++|+..++++++++|+++.+|..++.+|...|++++|++.+++..+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456778888888889999999999999999999999999999999999999999999998887643
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.28 E-value=2.8e-06 Score=80.54 Aligned_cols=153 Identities=10% Similarity=0.004 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661 394 VMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA 473 (615)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 473 (615)
...+..+...+.+.|++++|...|++....++... .+...++..++...+. ...+..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44577788889999999999999987654221111 1122333333332221 13677888899999
Q ss_pred CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh-hhHHHHHHHH-HHhCChhHHHHH
Q 036661 474 GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA-GIWGTLLCAC-KIHRNIEIGEYV 550 (615)
Q Consensus 474 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~-~~~~~~~~A~~~ 550 (615)
|++++|+..++++.+. .+.+...+..++.+|...|++++|...|+++. ..|+. ..+..+.... ...+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 23356788899999999999999999999987 55543 3455555442 345678889999
Q ss_pred HHHHhccCCCCCC
Q 036661 551 AYRLFELEPHSAA 563 (615)
Q Consensus 551 ~~~~~~~~p~~~~ 563 (615)
++++++..|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999998653
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=4.7e-06 Score=69.31 Aligned_cols=133 Identities=13% Similarity=0.088 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hh
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDL-RPNR----VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LN 497 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 497 (615)
++..+...+...|++++|+..+++..+... .++. .++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 456666777777777777777777665310 0111 35666777788888888888888877643221122 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661 498 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 559 (615)
.+..++.++...|++++|.+.+++.. ...+ ...+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56677888888888888888887764 1111 23566777888889999999999999887644
No 194
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.24 E-value=3.4e-06 Score=62.02 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=62.5
Q ss_pred CCChhhHHHHHHHHHHhCC---hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccCCc
Q 036661 525 KSDAGIWGTLLCACKIHRN---IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPG 598 (615)
Q Consensus 525 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 598 (615)
+++...+..++.++...++ .++|..+++++++++|+++.++..+|..+.+.|+|++|+..|+++.+..+. +|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3456677778877765554 699999999999999999999999999999999999999999999998876 553
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.22 E-value=2.7e-06 Score=62.74 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA 573 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 573 (615)
...+..++..+...|++++|...+++.. .+.+...+..++.++...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456667777777777777777777765 33345677778888888888888888888888888888888888888876
Q ss_pred ccC
Q 036661 574 LGG 576 (615)
Q Consensus 574 ~~g 576 (615)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.22 E-value=1.5e-06 Score=67.67 Aligned_cols=81 Identities=6% Similarity=-0.103 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661 478 KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLF 555 (615)
Q Consensus 478 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 555 (615)
+|+..|++..+. .+.+...+..++.+|...|++++|...+++.. .+.+...+..++.++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555421 12233445555555555555555555555544 22233445555555555555555555555555
Q ss_pred ccCCC
Q 036661 556 ELEPH 560 (615)
Q Consensus 556 ~~~p~ 560 (615)
++.|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 55443
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=9.1e-06 Score=80.43 Aligned_cols=160 Identities=9% Similarity=-0.021 Sum_probs=119.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 036661 432 IAGCALNGEFVEALDLFHQMMELDLRPN----------------RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE 495 (615)
Q Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 495 (615)
...+...|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455677888888888888887532111 124677889999999999999999988764433333
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccC-----
Q 036661 496 L----NHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELE----- 558 (615)
Q Consensus 496 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 558 (615)
. .+.+.+...+...|++++|.+++++.. ..+. ..++..++..+...|++++|...+++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 233445556667899999999987763 2222 4467788899999999999999999987642
Q ss_pred -CCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 559 -PHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 559 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
|....++..++.+|...|++++|..++++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 223458889999999999999999999988753
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.18 E-value=2.7e-06 Score=84.41 Aligned_cols=67 Identities=6% Similarity=-0.042 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
...+..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|+++.+..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4678889999999999999999999999999999999999999999999999999999999876543
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.18 E-value=5.4e-06 Score=81.98 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=89.3
Q ss_pred hhccCchHHHHHHHHHHHHhhC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCh-hhHHH
Q 036661 470 CTHAGFLEKGWGYFNLMTKVYQ--VNP----ELNHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGT 533 (615)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 533 (615)
+..+|++++|+.++++..+... +.| ...+++.|+.+|...|++++|..++++.. ..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566777777777776654211 112 13467777777778888888777776653 33432 36778
Q ss_pred HHHHHHHhCChhHHHHHHHHHhc-----cCCCCCC---ChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661 534 LLCACKIHRNIEIGEYVAYRLFE-----LEPHSAA---PYVEMANIYALGGRWDGVANLRTMMKRNQVKK 595 (615)
Q Consensus 534 l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 595 (615)
++..|...|++++|+.+++++++ +.|++|. ....+..++..+|++++|..+|+++++.....
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888899999999999998876 4577654 44577888889999999999999998865433
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=5.1e-06 Score=79.67 Aligned_cols=114 Identities=4% Similarity=-0.073 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKS-DAGIWGTLLCACK 539 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 539 (615)
..+..+...+.+.|++++|+..|+++.+.. +... .....+++.+ ..| +...+..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 456667777778888888888888777421 1100 0001111110 112 3457888899999
Q ss_pred HhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+.|++++|+..++++++++|+++.+|..++.+|...|++++|++.++++.+..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999987654
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=4.5e-05 Score=77.42 Aligned_cols=152 Identities=9% Similarity=0.006 Sum_probs=126.2
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCc----------hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 036661 439 GEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGF----------LEKGWGYFNLMTKVYQVNPELNHYSCMADLLG 507 (615)
Q Consensus 439 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 507 (615)
...++|++.++++... .|+ ...|+.-..++...|+ ++++++.++.+.+. .+.+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456889999999997 555 4567766666666666 89999999999863 3456678888888999
Q ss_pred hcC--ChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhC-ChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc-------
Q 036661 508 RKG--KLKEALDFVQSMP--IKSDAGIWGTLLCACKIHR-NIEIGEYVAYRLFELEPHSAAPYVEMANIYALG------- 575 (615)
Q Consensus 508 ~~g--~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 575 (615)
+.| ++++++++++++. .+-+..+|..........| .++++.+.++++++.+|++..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 6699999999997 5556789999888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhcCcc
Q 036661 576 -------GRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 576 -------g~~~~A~~~~~~~~~~~~~ 594 (615)
+++++|+++++++....+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5679999999998876644
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.1e-05 Score=62.11 Aligned_cols=68 Identities=9% Similarity=-0.075 Sum_probs=62.5
Q ss_pred ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
+...+..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|++.+++..+..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45577888899999999999999999999999999999999999999999999999999999876654
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.95 E-value=4.8e-05 Score=61.10 Aligned_cols=90 Identities=3% Similarity=-0.133 Sum_probs=51.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc---
Q 036661 502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL--- 574 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 574 (615)
|...|...+.+++|+++|++....-+......+...|.. .+++++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 344444444444444444444322334444445555544 55666777777766655 446667777777777
Q ss_pred -cCChHHHHHHHHHHHhcCc
Q 036661 575 -GGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 575 -~g~~~~A~~~~~~~~~~~~ 593 (615)
.+++++|.+++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6777777777777766654
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=2.8e-05 Score=57.10 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 456777888999999999999999999999999999999999999999999999999999987654
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=1.3e-05 Score=64.51 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=33.9
Q ss_pred HHHHHHHHhCC-CCC-ChhhHHHHHHHHHHh-----------CChhHHHHHHHHHhccCCCCC
Q 036661 513 KEALDFVQSMP-IKS-DAGIWGTLLCACKIH-----------RNIEIGEYVAYRLFELEPHSA 562 (615)
Q Consensus 513 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~ 562 (615)
++|+..|++.. ..| ...+|..++.+|... |++++|++.|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 35555555554 233 344555555555554 589999999999999999864
No 206
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.85 E-value=3.5e-06 Score=79.32 Aligned_cols=259 Identities=13% Similarity=0.159 Sum_probs=156.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhh
Q 036661 21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYA 100 (615)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (615)
.|+.|.++..+.+++.+|++.|-+. -|+..|..++.++.+.|.+++-...+.-..+.. .++.+-+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 7999999999999888888766432 267788999999999999998888777665553 45555678888999
Q ss_pred cCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 036661 101 KCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF 180 (615)
Q Consensus 101 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 180 (615)
+.++..+.++.+. .||..-...+.+-|...|.++.|.-+|..+.
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is--------------------------------- 171 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------------------------------- 171 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------------------------------
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------------------------------
Confidence 9888776554443 3677667777777777777776655554332
Q ss_pred HHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHh
Q 036661 181 GIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTT 260 (615)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 260 (615)
-|..|...+.+.|++..|.+.-++ ..++.+|-.+-.+|...+.+.-|.-.--.++ +.| ..
T Consensus 172 -----------N~akLAstLV~L~~yq~AVdaArK----Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vha--de 231 (624)
T 3lvg_A 172 -----------NFGRLASTLVHLGEYQAAVDGARK----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DE 231 (624)
T ss_dssp -----------CCTTTSSSSSSCSGGGSSTTTTTT----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCS--SC
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccH--HH
Confidence 223333344444555444333222 2355566666666666666554433322222 111 12
Q ss_pred HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CcccHHH
Q 036661 261 VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDR-----------TRVSWTA 329 (615)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~ 329 (615)
...++..|-..|.+++...+++...... ......|+-|.-.|++- ++++..+.++..-.+ ....|.-
T Consensus 232 L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~E 309 (624)
T 3lvg_A 232 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 309 (624)
T ss_dssp CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHH
Confidence 2334555666666666666666555211 23445566666666664 444544444443111 3345777
Q ss_pred HHHHHHhcCChhHHHH
Q 036661 330 MISGYAQKGDLDEALR 345 (615)
Q Consensus 330 ll~~~~~~~~~~~a~~ 345 (615)
++-.|.+-.+++.|..
T Consensus 310 lvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 310 LVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHTCHHHHHH
T ss_pred HHHHHhcchhHHHHHH
Confidence 7777777777776543
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.84 E-value=2.5e-05 Score=60.57 Aligned_cols=77 Identities=9% Similarity=0.013 Sum_probs=50.2
Q ss_pred HHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 515 ALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 515 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
|++.+++.. ..| +...+..++..+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555443 223 44566666666777777777777777777777777777777777777777777777777766553
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.84 E-value=1.4e-05 Score=59.89 Aligned_cols=81 Identities=14% Similarity=0.047 Sum_probs=59.9
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-Chh-hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCCh
Q 036661 502 MADLLGRKGKLKEALDFVQSMP-IKS-DAG-IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRW 578 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 578 (615)
.+..+.+.|++++|.+.++++. ..| +.. .+..++.++...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4566778888888888888776 333 456 77788888888899999999999999999988776632 555
Q ss_pred HHHHHHHHHHHh
Q 036661 579 DGVANLRTMMKR 590 (615)
Q Consensus 579 ~~A~~~~~~~~~ 590 (615)
.+|...+++...
T Consensus 78 ~~a~~~~~~~~~ 89 (99)
T 2kc7_A 78 MDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHCCTTH
T ss_pred HHHHHHHHHHhc
Confidence 666666654433
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.0004 Score=55.63 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=92.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHH
Q 036661 439 GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKE 514 (615)
Q Consensus 439 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 514 (615)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 47889999999999987 55544 777788888889999999998853 456677888889988 899999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCC
Q 036661 515 ALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEP 559 (615)
Q Consensus 515 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 559 (615)
|+++|++....-+......+...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998744567778888888888 8899999999999988743
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.68 E-value=6e-05 Score=56.37 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=57.3
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhccCCCCCC-ChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661 533 TLLCACKIHRNIEIGEYVAYRLFELEPHSAA-PYVEMANIYALGGRWDGVANLRTMMKRNQVKK 595 (615)
Q Consensus 533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 595 (615)
..+..+...|++++|+..++++++.+|+++. .+..+|.+|...|++++|++.+++..+..+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3566778899999999999999999999999 99999999999999999999999998876543
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.65 E-value=0.00019 Score=71.04 Aligned_cols=123 Identities=10% Similarity=-0.002 Sum_probs=86.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CC---CCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhh--CCC---CC-hhHHH
Q 036661 434 GCALNGEFVEALDLFHQMMELD---LR---PNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVY--QVN---PE-LNHYS 500 (615)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~~~~~---~~---p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~-~~~~~ 500 (615)
.+...|++++|+.++++..+.. +. |+. .+++.|..+|...|++++|..++++...-. -+. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456788888888887776521 12 222 477888888888899998888888776421 112 22 35688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---------CCCChh-hHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 501 CMADLLGRKGKLKEALDFVQSMP---------IKSDAG-IWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
.|+.+|...|++++|..+++++. ..|+.. +...+..++...+.+++|+.+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999988888764 233322 345555677788899999999988865
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.62 E-value=2.7e-05 Score=73.52 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=138.7
Q ss_pred cchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhcc
Q 036661 190 VSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCV 269 (615)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 269 (615)
+.+|..|..+....+++.+|.+.|-+. .|...|..+|.+..+.|.+++-+..+.-..+..-.| ..=+.++-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 445556666666655555555444332 244455556666666666666665554444332222 22234555555
Q ss_pred CchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC------------------------CCCcc
Q 036661 270 CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC------------------------DRTRV 325 (615)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~ 325 (615)
+.++..+.+.++. .|+..-...+.+-|...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 5555444333322 3444445556666666666666666655541 12667
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 036661 326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 405 (615)
Q Consensus 326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (615)
+|-.+-.+|...+++.-|.-.--.++- .|| ....++..|...|-+++...+++.-.... .....+|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 899999999999988766544333332 122 12245667888888888888887766422 456677888887777
Q ss_pred hcCChHHHHHHHhcCCC----C-------ChHHHHHHHHHHHhcCChHHHH
Q 036661 406 KCGSIGDARELFYALPE----K-------TVVSWTTMIAGCALNGEFVEAL 445 (615)
Q Consensus 406 ~~g~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~ 445 (615)
+- ++++..+.++.... | ....|.-++-.|..-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 45666665554332 2 3457888888888888888764
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.58 E-value=0.0018 Score=60.14 Aligned_cols=137 Identities=13% Similarity=0.015 Sum_probs=72.4
Q ss_pred CChHHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhc----cC----chHHHHHHHHHHHH
Q 036661 423 KTVVSWTTMIAGCA--LNG---EFVEALDLFHQMMELDLRPNR-VTFLAVLQACTH----AG----FLEKGWGYFNLMTK 488 (615)
Q Consensus 423 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~ 488 (615)
.+...|...+++.. ..+ +..+|..+|++.++. .|+. ..+..+..+|.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35666666665533 333 347888999999986 6664 455544444431 00 00011111111111
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 489 VYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
....+.+...+..+...+...|++++|...++++. ..|+...+..+...+...|+.++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 11223444555555555555566666666666665 34555555555566666666666666666666666653
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.50 E-value=0.00021 Score=63.38 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=57.2
Q ss_pred HHHHHHHhCC-CCCC---hhhHHHHHHHHHH-----hCChhHHHHHHHHHhccCCCC-CCChHhHHHHHHcc-CChHHHH
Q 036661 514 EALDFVQSMP-IKSD---AGIWGTLLCACKI-----HRNIEIGEYVAYRLFELEPHS-AAPYVEMANIYALG-GRWDGVA 582 (615)
Q Consensus 514 ~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~ 582 (615)
.|...++++. ..|+ ...+..++..|.+ -|+.++|+++|+++++++|+. ..+++.+++.|++. |++++|.
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 3444444443 3343 3455666666655 378888888888888888864 77888888877774 7788888
Q ss_pred HHHHHHHhcCcccCCc
Q 036661 583 NLRTMMKRNQVKKFPG 598 (615)
Q Consensus 583 ~~~~~~~~~~~~~~~~ 598 (615)
+++++.+..++..+|+
T Consensus 261 ~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 261 EALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHCCGGGCSS
T ss_pred HHHHHHHcCCCCCCCC
Confidence 8888887777765554
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.50 E-value=0.00054 Score=51.17 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661 424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA 503 (615)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 503 (615)
+...|..+..+|...|++++|+..|++..+.+ +.+...|..+..+|...|++++|.+.|++..+...-.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 45566677777777777777777777777653 22345666777777777777777777777664322233444333344
Q ss_pred HHHH
Q 036661 504 DLLG 507 (615)
Q Consensus 504 ~~~~ 507 (615)
..+.
T Consensus 85 ~~l~ 88 (100)
T 3ma5_A 85 DAKL 88 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.46 E-value=6e-05 Score=73.23 Aligned_cols=62 Identities=6% Similarity=-0.022 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhCChhHHHHHHHHHhcc-----CCCCC---CChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661 529 GIWGTLLCACKIHRNIEIGEYVAYRLFEL-----EPHSA---APYVEMANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
.+++.++.+|...|++++|+.++++++++ .|++| ..+..||.+|..+|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 35677777788888888888888887753 34443 4677888889999999999988888765
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.00018 Score=70.12 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=55.1
Q ss_pred HHhcCChHHHHHHHHhCC------CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhcc-----CCCCC---CChHh
Q 036661 506 LGRKGKLKEALDFVQSMP------IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFEL-----EPHSA---APYVE 567 (615)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~ 567 (615)
+.+.|++++|.+++++.. ..|+ ..+++.++.+|...|++++|+.++++++++ .|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334556666666555432 1121 235666777777778888888777777653 34443 45677
Q ss_pred HHHHHHccCChHHHHHHHHHHHh
Q 036661 568 MANIYALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 568 l~~~~~~~g~~~~A~~~~~~~~~ 590 (615)
||.+|..+|++++|+.++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888888888888887765
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.18 E-value=0.0012 Score=64.17 Aligned_cols=93 Identities=12% Similarity=0.006 Sum_probs=58.0
Q ss_pred ccCchHHHHHHHHHHHHhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCh-hhHHHHH
Q 036661 472 HAGFLEKGWGYFNLMTKVY--QVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGTLL 535 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~ 535 (615)
..|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|..+++++. ..|+. .+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3456666666666655321 11122 2456667777777777777777766653 33333 3567788
Q ss_pred HHHHHhCChhHHHHHHHHHhcc-----CCCCCCC
Q 036661 536 CACKIHRNIEIGEYVAYRLFEL-----EPHSAAP 564 (615)
Q Consensus 536 ~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~ 564 (615)
..|..+|++++|+.++++++++ .|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 8888888888888888888763 4665443
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.18 E-value=0.019 Score=43.64 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=99.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661 435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE 514 (615)
Q Consensus 435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 514 (615)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-|.+.+ +|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 34568888888888888763 3444555555555555666777777777765433322 344444
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 515 ALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 515 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
....+-.+. .+.......+.....+|.-++-.+++..++..+|-+|..+..++.+|.+.|+..+|.++++++-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444443332 234455666777888999999999999987777767999999999999999999999999999999874
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.15 E-value=0.0023 Score=59.53 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHh--hccC---chHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHH---hcC-C-------hHHHHHHH
Q 036661 457 RPNRVTFLAVLQAC--THAG---FLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLG---RKG-K-------LKEALDFV 519 (615)
Q Consensus 457 ~p~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~---~~g-~-------~~~A~~~~ 519 (615)
+.+...|...+++. ...+ +..+|..+|+++.+ ..|+. ..+..+..+|. ..+ . ...|.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45556676666543 3333 46789999999984 36763 34444444432 111 1 11222222
Q ss_pred HhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 520 QSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 520 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
..+. .+.+..++..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++.....+.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2233 3456667777777777789999999999999999985 667789999999999999999999999876653
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.14 E-value=0.0039 Score=45.44 Aligned_cols=68 Identities=9% Similarity=-0.087 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 493 NPELNHYSCMADLLGRKGK---LKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
+.+...+..++.++...++ .++|..++++.. .+.+...+..++..+.+.|++++|+..|+++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556777778877765554 688888888887 3445667777888889999999999999999999998
No 222
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.11 E-value=0.3 Score=49.55 Aligned_cols=114 Identities=5% Similarity=-0.082 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661 439 GEFVEALDLFHQMMELDLRPNRV----TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE 514 (615)
Q Consensus 439 ~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 514 (615)
++.+.|...+......+ ..+.. ....+.......+...++...+..... ..++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 48899999998887643 23332 223333344455535566666666542 23444445555666668899999
Q ss_pred HHHHHHhCCCCC-C-hhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 515 ALDFVQSMPIKS-D-AGIWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 515 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
|...|+.+...+ + .....-+..+....|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998332 2 22233355667778999999999999985
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0014 Score=52.11 Aligned_cols=90 Identities=12% Similarity=-0.038 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC-CC-C--ChhhHHHHHHHHHHhCChhHHH
Q 036661 476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG---KLKEALDFVQSMP-IK-S--DAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
...+.+.|.+..+. + +++..+...++.++++.+ +.++++.++++.. .. | ....+..+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34444445544432 2 356666666777777766 4556777776655 22 4 3456777888889999999999
Q ss_pred HHHHHHhccCCCCCCChHh
Q 036661 549 YVAYRLFELEPHSAAPYVE 567 (615)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~ 567 (615)
+.++++++++|++..+...
T Consensus 92 ~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 9999999999987554443
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.05 E-value=0.0026 Score=61.92 Aligned_cols=98 Identities=10% Similarity=-0.123 Sum_probs=62.0
Q ss_pred HhhccCchHHHHHHHHHHHHhhC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCh-hhHH
Q 036661 469 ACTHAGFLEKGWGYFNLMTKVYQ--VNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWG 532 (615)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~ 532 (615)
.+.++|++++|+.++++..+... +.|+ ..+++.++.+|...|++++|+.+++++. ..|+. ..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456677777777766653211 1121 3456667777777777777777776653 23332 3567
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhc-----cCCCCCCChH
Q 036661 533 TLLCACKIHRNIEIGEYVAYRLFE-----LEPHSAAPYV 566 (615)
Q Consensus 533 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~ 566 (615)
.++..|...|++++|+.+++++++ +.|++|.+-.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 788888888888888888888876 3566654443
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.04 E-value=0.0016 Score=49.01 Aligned_cols=71 Identities=8% Similarity=0.097 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC---------CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661 499 YSCMADLLGRKGKLKEALDFVQSMP---------IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA 569 (615)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 569 (615)
+..++..+.+.|+++.|...++.+. ..+...++..++.++.+.|+++.|...++++++++|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3345555555555555555555443 0123457788888999999999999999999999999876655553
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.01 E-value=0.00058 Score=54.31 Aligned_cols=80 Identities=8% Similarity=-0.131 Sum_probs=65.7
Q ss_pred HHHHHHHhCC--CCCChhhHHHHHHHHHHhC---ChhHHHHHHHHHhccC-C-CCCCChHhHHHHHHccCChHHHHHHHH
Q 036661 514 EALDFVQSMP--IKSDAGIWGTLLCACKIHR---NIEIGEYVAYRLFELE-P-HSAAPYVEMANIYALGGRWDGVANLRT 586 (615)
Q Consensus 514 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 586 (615)
.+.+.|.+.. ..++..+...+.+++.+.+ ++++++.+++++++.+ | ++...++.|+-.|.+.|+|++|+++++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3344444332 3567788888999999987 6779999999999998 7 568899999999999999999999999
Q ss_pred HHHhcCc
Q 036661 587 MMKRNQV 593 (615)
Q Consensus 587 ~~~~~~~ 593 (615)
++++..+
T Consensus 96 ~lL~ieP 102 (152)
T 1pc2_A 96 GLLQTEP 102 (152)
T ss_dssp HHHHHCT
T ss_pred HHHhcCC
Confidence 9987665
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.50 E-value=0.068 Score=57.33 Aligned_cols=158 Identities=14% Similarity=0.056 Sum_probs=106.9
Q ss_pred HHHHHHhcCChhHHHH-HHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCC
Q 036661 25 QIREAVDKNEAHKALL-LFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCD 103 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 103 (615)
..+.....+++++|.+ ++..+. +...+..++..+.+.|.++.|.++.+. +. .-.......|
T Consensus 605 ~~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~ 666 (814)
T 3mkq_A 605 EFQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVG 666 (814)
T ss_dssp HHHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHT
T ss_pred HHhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcC
Confidence 3455567888888877 552211 122347777888888998888876431 11 1133456779
Q ss_pred ChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661 104 RLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIH 183 (615)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 183 (615)
+++.|.++.+.+. +...|..+...+.+.|+++.|.++|..+.. |..+...+...++.+...++.+....
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988774 467899999999999999999999998754 34455555557777766666555554
Q ss_pred hcCCCccchHHHHHHHHHccCCHHHHHHHHHhcc
Q 036661 184 IGVDADVSVCNTWISAYAKCNDLKMAELVFRGIE 217 (615)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 217 (615)
.| -++....+|.+.|++++|.+++.++.
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 33 23444555666777777777766554
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.49 E-value=0.019 Score=43.80 Aligned_cols=91 Identities=12% Similarity=-0.078 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhCC-CC-C--ChhhHHHHHHHHHHhCChhHHH
Q 036661 476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE---ALDFVQSMP-IK-S--DAGIWGTLLCACKIHRNIEIGE 548 (615)
Q Consensus 476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~A~ 548 (615)
...+.+-|...... + .|+..+--.++.++.+..+... ++.++++.. .. | ....+..+.-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444455544432 2 2666666667777777776655 777777765 22 3 2345667778888999999999
Q ss_pred HHHHHHhccCCCCCCChHhH
Q 036661 549 YVAYRLFELEPHSAAPYVEM 568 (615)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~l 568 (615)
+..+.+++.+|+|..+....
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHH
Confidence 99999999999876655443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.36 E-value=0.0077 Score=45.12 Aligned_cols=66 Identities=9% Similarity=-0.150 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHhCChhHHHHHHHHHhccC-------CCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELE-------PHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
..-...++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 3445578888999999999999999998853 23456789999999999999999999999987554
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.35 E-value=0.0043 Score=55.15 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhCC-CCCC--hhhHHHHHHHHHH-hCCh
Q 036661 477 EKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRK-----GKLKEALDFVQSMP-IKSD--AGIWGTLLCACKI-HRNI 544 (615)
Q Consensus 477 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~-~~~~ 544 (615)
..|...++++. .+.|+ -..|..++..|... |+.++|.+.|++.. ..|+ ...+..+...++. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 44555555555 34555 34566677777763 77777877777776 5553 4566666666666 4788
Q ss_pred hHHHHHHHHHhccCCCC-CCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 545 EIGEYVAYRLFELEPHS-AAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 545 ~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
+++.+.+++++..+|+. |. ..+ ...+...+|..+++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~--~~l----an~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH--NKL----LVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS--CHH----HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCC--hhH----HHHHHHHHHHHHHHHhH
Confidence 88888888888887774 33 122 23334456666665543
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.25 E-value=0.013 Score=45.81 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHhhccCch------HHHHHHHHHHHHhhCCCCChh-HHHHHHH------HHHhcCChHHHHHHHHhCC
Q 036661 457 RPNRVTFLAVLQACTHAGFL------EKGWGYFNLMTKVYQVNPELN-HYSCMAD------LLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 457 ~p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~ 523 (615)
+-|..+|...+....+.|+. ++..++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34557888888877877888 888889998886 6677632 1222222 1234578888888887774
Q ss_pred --CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661 524 --IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 524 --~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 561 (615)
.+.-...|...+..-.++|+...|.+++.+++.+.|..
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 11125566666666677888888888888888887764
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.32 Score=39.75 Aligned_cols=128 Identities=12% Similarity=0.054 Sum_probs=74.1
Q ss_pred HHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661 403 MYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGY 482 (615)
Q Consensus 403 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 482 (615)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|++... +..+.-.|.-.|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777776655 4566777777777777777777777777653 23344445555666555544
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHH
Q 036661 483 FNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRL 554 (615)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 554 (615)
-+..... | -++....++.-.|+++++.+++.+...-| .........|-.+.|.++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 4433321 1 13344455666777777777777655222 1112223356666666666554
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.19 E-value=0.033 Score=59.80 Aligned_cols=76 Identities=11% Similarity=-0.010 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchH
Q 036661 398 NALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLE 477 (615)
Q Consensus 398 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 477 (615)
..++..+.+.|.++.|.++.+. .. .-.......|+++.|.++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 4444555555555555554421 10 1122233445555555543221 34455666666666666666
Q ss_pred HHHHHHHHHH
Q 036661 478 KGWGYFNLMT 487 (615)
Q Consensus 478 ~a~~~~~~~~ 487 (615)
.|.+.|.++.
T Consensus 699 ~A~~~y~~~~ 708 (814)
T 3mkq_A 699 LAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 6666665554
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.016 Score=59.85 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
.+..-...|...|+++-|+++.++++..-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344445667789999999999999999999999999999999999999999999998874
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.42 Score=39.01 Aligned_cols=129 Identities=9% Similarity=0.033 Sum_probs=91.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh
Q 036661 433 AGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKL 512 (615)
Q Consensus 433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 512 (615)
......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 3445779999999988766 3577899999999999999999999998762 45677778888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 513 KEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 513 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
+.-.++-+..... .-++.....+...|+++++.+++.+.-+ +..-+-.....|--+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~---g~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTR---EDFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC---ccHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 7766555443311 2344556667788999999999877543 222223333456777777777765
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.76 E-value=2.5 Score=44.73 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHH
Q 036661 122 SWNAMIVGFAQMGFLEKVLCLFYNMRL 148 (615)
Q Consensus 122 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 148 (615)
-|..++++..+.++.+.+.++|+.+..
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677788888888888888888764
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.59 E-value=0.097 Score=40.98 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HhhccCchHHHHHHHHHHHH
Q 036661 422 EKTVVSWTTMIAGCALNGEF------VEALDLFHQMMELDLRPNRV----TFLAVLQ---ACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 422 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~ 488 (615)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.- .+...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35777888888887777888 7888888888875 566531 1111111 12334788888888888875
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 489 VYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
. .-.- ..+|-..+..-.|.|+...|.+++.+..
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 3 2222 6667677777778888888888887765
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.44 E-value=0.019 Score=43.87 Aligned_cols=69 Identities=6% Similarity=-0.148 Sum_probs=58.6
Q ss_pred CCChhhHHHHHHHHHHhCChhH---HHHHHHHHhccC-C-CCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 525 KSDAGIWGTLLCACKIHRNIEI---GEYVAYRLFELE-P-HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 525 ~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.|+..+-..+++++.+.++... ++.+++.+++.+ | ......+.|+-.+.+.|+|++|+++.+.+++..+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4677788888899988776655 999999999877 5 4567889999999999999999999999987665
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.68 E-value=1.1 Score=34.41 Aligned_cols=141 Identities=10% Similarity=0.017 Sum_probs=84.6
Q ss_pred HhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 036661 233 CTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSA 312 (615)
Q Consensus 233 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 312 (615)
+.-.|..++..++..+.... .+..-|+.++--....- ....++..+.+-|-..|.. .+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a---~C~y~v~vLd~IGkiFDis----------~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESI---DCRYMFQVLDKIGSYFDLD----------KCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHC---CHHHHHHHHHHHGGGSCGG----------GCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhh---chhHHHHHHHHHhhhcCcH----------hhhcHHHH
Confidence 34467777777877777653 33344444443221111 1222333333333222221 23444444
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCC
Q 036661 313 RFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK 391 (615)
Q Consensus 313 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 391 (615)
...+-.+. .+....+..+.....+|.-++..+++.++.. +.+|++.....+..+|.+.|+..++.+++.+..+.|++
T Consensus 81 i~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44443332 2334556677888888998988888888644 34788888888999999999999999999888887754
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.65 E-value=0.29 Score=38.01 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=50.6
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661 493 NPELNHYSCMADLLGRKGKLK---EALDFVQSMP-IKS--DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV 566 (615)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 566 (615)
.|+..+--.++.++.+..+.+ +++.++++.. ..| ....+..+.-++.+.|++++|+++.+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456666556666776665443 4566666554 233 3346667778888999999999999999999998755433
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.26 E-value=0.17 Score=39.27 Aligned_cols=70 Identities=3% Similarity=-0.091 Sum_probs=58.1
Q ss_pred CCChhhHHHHHHHHHHhC---ChhHHHHHHHHHhccCCC-CCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 525 KSDAGIWGTLLCACKIHR---NIEIGEYVAYRLFELEPH-SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 525 ~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
.|+..+-..+.+++.++. +..+++.+++.+++..|. ....++.|+-.+.+.|+|++|+++.+.+++..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 567777778888888766 455788999999998884 4578889999999999999999999999876653
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.15 E-value=0.23 Score=37.99 Aligned_cols=74 Identities=11% Similarity=0.017 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhCC-CCC--ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661 493 NPELNHYSCMADLLGRKGKL---KEALDFVQSMP-IKS--DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV 566 (615)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 566 (615)
.|+..+--.++.++.+..+. .+++.+++++. ..| ....+..+.-++.+.|++++|++..+.+++.+|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 35555555566666665544 24555555544 233 2446666777788888888888888888888888755433
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.06 E-value=7.3 Score=41.36 Aligned_cols=250 Identities=10% Similarity=-0.066 Sum_probs=134.6
Q ss_pred HHHhcCCHHHHHHHHhccCCC----Ccc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CCCHHHHH--HHH
Q 036661 302 MYSKCGDIDSARFLFDGMCDR----TRV--SWTAMISGYAQKGDLDEALRLFFAMEAAGE-------VPDLVTVL--SMI 366 (615)
Q Consensus 302 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~--~ll 366 (615)
+....|+.+++..+++..... +.. .-..+.-+....|..+++..++.......- .+....-. .|-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455678888899999887542 211 222233345566666678887777654321 01111112 222
Q ss_pred HhhcccchhhHHHHHHHHHHhcCCCCch--HHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh--HHHHHHHHHHHhcCCh
Q 036661 367 SGCGQSGALELGKWFDNYACSGGLKDNV--MVCNALIDMYSKCGSIGDARELFYALPE-KTV--VSWTTMIAGCALNGEF 441 (615)
Q Consensus 367 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~ 441 (615)
.++...++. .+.+.+..+.... .+.. ..-.++...+.-.|+.+....++..+.+ .+. .-...+.-++...|+.
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 233344443 3444444444322 1111 1222344445677787777777765433 222 2233344445577899
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036661 442 VEALDLFHQMMELDLRPNRV--TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFV 519 (615)
Q Consensus 442 ~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 519 (615)
+.+..+++.+.... .|... ....+.-+|+..|+.....+++..+..+ ...+..-...++-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99988888888741 23222 2234455788889988777788888753 2223333333444555677777777777
Q ss_pred HhCCCCCChhhHHHHHHH--HHHhCCh-hHHHHHHHHHhc
Q 036661 520 QSMPIKSDAGIWGTLLCA--CKIHRNI-EIGEYVAYRLFE 556 (615)
Q Consensus 520 ~~~~~~p~~~~~~~l~~~--~~~~~~~-~~A~~~~~~~~~ 556 (615)
+.+....++.+......+ ....|+. .++...++++..
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 665533344333333333 3334443 577777777763
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.86 E-value=0.082 Score=40.45 Aligned_cols=71 Identities=3% Similarity=-0.101 Sum_probs=58.2
Q ss_pred CCCChhhHHHHHHHHHHhC---ChhHHHHHHHHHhccCCC-CCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661 524 IKSDAGIWGTLLCACKIHR---NIEIGEYVAYRLFELEPH-SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK 594 (615)
Q Consensus 524 ~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 594 (615)
..|+..+--.+++++.+.. +..+++.+++.+++.+|. ....++.|+-.+.+.|+|++|+++.+.+++..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3567777777888888766 445789999999988884 4678899999999999999999999999876543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.83 E-value=0.36 Score=38.68 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 497 NHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
+.--.+..+|.+.|++++|+.+++.++
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 444456777777777777777777776
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.21 E-value=0.2 Score=40.13 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=29.3
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036661 467 LQACTHAGFLEKGWGYFNLMTKVYQVNPEL-------NHYSCMADLLGRKGKLKEALDFVQSM 522 (615)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (615)
+..+...|.++.|+-+.+.+....+.+|+. .++..+++++...|++..|...|++.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444555566666665555544332333331 23444556666666666666666553
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.41 E-value=6.2 Score=35.82 Aligned_cols=133 Identities=10% Similarity=-0.036 Sum_probs=80.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHH----HHHHHHCCCCCCHHhHHHHHHh
Q 036661 192 VCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNF----YRHMIYDGFRPDVTTVVSLLSS 267 (615)
Q Consensus 192 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~ 267 (615)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...+-++ ++...+.+++++..+...++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455566777888888888765433 334556666555554 4555666888888877777766
Q ss_pred ccCchhhh-hhhHHHHHHHH----hc--CCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 036661 268 CVCPEALV-QGRLVHSHGIH----YG--FDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQK 337 (615)
Q Consensus 268 ~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 337 (615)
+......+ .-..+++.+++ .| ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 55432211 22334444432 22 1236778888899999999999998877533322444555555444443
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.29 E-value=4 Score=39.66 Aligned_cols=187 Identities=10% Similarity=0.065 Sum_probs=119.7
Q ss_pred cCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCchH--HHHHHHHHHHhcC
Q 036661 337 KGDLDEALRLFFAMEAA-----GEVPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVM--VCNALIDMYSKCG 408 (615)
Q Consensus 337 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~--~~~~l~~~~~~~g 408 (615)
.|+++.|++.+-.+.+. ...........++..|...++++...+.+..+.+ +|..+... ....++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888887666542 2345567788889999999999998888777665 33222211 1122233333333
Q ss_pred ChH--HHHHHHhcCCC---C-------ChHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCH---HHHHHHHHHhh
Q 036661 409 SIG--DARELFYALPE---K-------TVVSWTTMIAGCALNGEFVEALDLFHQMME--LDLRPNR---VTFLAVLQACT 471 (615)
Q Consensus 409 ~~~--~A~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~p~~---~~~~~l~~~~~ 471 (615)
..+ .-..+.+.+.. . .......|...+...|++.+|..++.++.. .|..+.. ..+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 332 23334443332 1 112346678889999999999999999864 2322222 35666678899
Q ss_pred ccCchHHHHHHHHHHHHh-hCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 472 HAGFLEKGWGYFNLMTKV-YQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
..+++..|..++.++... +...+. ...+...+..+...+++.+|...|.++.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999987532 122222 2356677888888999999988776643
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.36 E-value=8.5 Score=35.21 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=80.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHH----HHHHHCCCCCCHHhHHHHHHh
Q 036661 192 VCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFY----RHMIYDGFRPDVTTVVSLLSS 267 (615)
Q Consensus 192 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~ 267 (615)
+|.++..-|.+.+++++|.+++..-. ..+.+.|+...+-++- +.+.+.++++|..+...++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455666788889999888875433 3455566665555544 555667888888887777776
Q ss_pred ccCchhhh-hhhHHHHHHH----Hhc--CCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcC
Q 036661 268 CVCPEALV-QGRLVHSHGI----HYG--FDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKG 338 (615)
Q Consensus 268 ~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 338 (615)
+......+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|+..|-.-.+++...+..++.-+...+
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 65544221 1122333333 233 23467777888888899999999888874322222345555554444433
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.06 E-value=2.5 Score=37.04 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh----HHHHHHHHHHhc
Q 036661 434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN----HYSCMADLLGRK 509 (615)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 509 (615)
...+.|+.++++.....-++.. +-|...-..++..++-.|++++|.+-++...+ +.|+.. .|..++.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4557788899988888887763 44566677778888899999999988888773 355543 33333332
Q ss_pred CChHHHH-HHHHhC--C--CCCChhhHHHHHHHH--HHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661 510 GKLKEAL-DFVQSM--P--IKSDAGIWGTLLCAC--KIHRNIEIGEYVAYRLFELEPHSAAPYV 566 (615)
Q Consensus 510 g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 566 (615)
+... ++|..- + ......-...++.+. ...|+.++|..+-.++++..|..+....
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 1121 222221 1 111222334444444 4579999999999999998887655443
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.82 E-value=8.5 Score=42.77 Aligned_cols=143 Identities=8% Similarity=0.041 Sum_probs=89.1
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC--------------------
Q 036661 364 SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK-------------------- 423 (615)
Q Consensus 364 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------- 423 (615)
.++..+...+..+.+.++.... +.++.....+..+|...|++++|.+.|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3444555556666555544322 334444456677888899999999999876431
Q ss_pred ------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC
Q 036661 424 ------TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR----VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN 493 (615)
Q Consensus 424 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 493 (615)
-..-|..++..+.+.+.++.++++-+..++....-+. ..|..+...+...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 0112566777777888888888887777764212121 14677778888888888888777666521 2
Q ss_pred CChhHHHHHHHHHHhcCChHH
Q 036661 494 PELNHYSCMADLLGRKGKLKE 514 (615)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~ 514 (615)
--...+..|+..++..|..+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 234556667666666655443
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.33 E-value=12 Score=35.29 Aligned_cols=58 Identities=19% Similarity=0.080 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661 430 TMIAGCALNGEFVEALDLFHQMMEL--DLRPNR---VTFLAVLQACTHAGFLEKGWGYFNLMT 487 (615)
Q Consensus 430 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 487 (615)
.++..|...|++.+|.+++.++.+. ...... ..+..-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3555566666666666666655542 111111 123333445555666666666665554
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.33 E-value=2.3 Score=40.44 Aligned_cols=71 Identities=7% Similarity=0.016 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCChhHH
Q 036661 428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK----VYQVNPELNHY 499 (615)
Q Consensus 428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 499 (615)
...++..+...|++++++..++.+.... +-+...+..++.++...|+..+|++.|++..+ +.|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3446677778899999999988888763 55778899999999999999999998888654 46888887654
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.06 E-value=0.51 Score=45.05 Aligned_cols=57 Identities=12% Similarity=-0.051 Sum_probs=34.8
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 533 TLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
.++..+...|+.+++...++.++..+|-+...|..+..+|.+.|+..+|++.|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445556666666666666666666655566666666666666666666666553
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.36 E-value=2.6 Score=46.79 Aligned_cols=192 Identities=10% Similarity=0.011 Sum_probs=124.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------------------
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP------------------ 458 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p------------------ 458 (615)
...++..+...+..+.+.++..-... ++..--.+..++...|++++|...|++... |+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 44566777788888888877665544 444445677889999999999999987532 1100
Q ss_pred -----CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh
Q 036661 459 -----NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG 529 (615)
Q Consensus 459 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 529 (615)
-..-|..++..+.+.+.++.+.++-+.+.+..+-.++ ...|..+.+.+...|++++|...+-.++ ..-...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 1123667778888889999999888887754221211 2367888999999999999999998776 333456
Q ss_pred hHHHHHHHHHHhCChhHH------------HHHHH-HHhcc-CCCC-CCChHhHHHHHHccCChHHHHHH-HHHHHh
Q 036661 530 IWGTLLCACKIHRNIEIG------------EYVAY-RLFEL-EPHS-AAPYVEMANIYALGGRWDGVANL-RTMMKR 590 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A------------~~~~~-~~~~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 590 (615)
.+..++...+..|..+.- ..++. ++... ++.+ |..|..|=-.+...|++.+|..+ |+++.+
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 777777766665554443 33332 22222 3333 34455555556667776665554 666543
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.23 E-value=19 Score=34.79 Aligned_cols=197 Identities=12% Similarity=0.078 Sum_probs=113.9
Q ss_pred CCHHHHHHHHhccC-----CC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhh----ccc
Q 036661 307 GDIDSARFLFDGMC-----DR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAA-GEVPDLVTVLSMISGC----GQS 372 (615)
Q Consensus 307 ~~~~~a~~~~~~~~-----~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~----~~~ 372 (615)
|+++.|.+.+-.+. .. .......++..|...++++...+.+.-+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 67788877665441 11 2335677888899999999888877665543 332222 23344332 222
Q ss_pred chhhH--HHHHHHHHHh--cC-CCC---chHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHH
Q 036661 373 GALEL--GKWFDNYACS--GG-LKD---NVMVCNALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGC 435 (615)
Q Consensus 373 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~ 435 (615)
...+. -..+.+.+.. .| +-. .......|...|...|++.+|.+++.++.. .+ +..+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222 1111111111 11 111 234456788889999999999999887653 11 34667778888
Q ss_pred HhcCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 036661 436 ALNGEFVEALDLFHQMME----LDLRPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK 509 (615)
Q Consensus 436 ~~~~~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 509 (615)
...+++..|..+++++.. ....|+. ..+...+..+...+++.+|...| ..+...+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y----------------~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL----------------QEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH----------------HHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH----------------HHHHhccccc
Confidence 999999999999888643 2222222 23445555666677777665443 3344556666
Q ss_pred CChHHHHHHHHh
Q 036661 510 GKLKEALDFVQS 521 (615)
Q Consensus 510 g~~~~A~~~~~~ 521 (615)
++.......+..
T Consensus 252 ~d~~~~~~~L~~ 263 (445)
T 4b4t_P 252 SDEAKWKPVLSH 263 (445)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666555444444
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.70 E-value=26 Score=35.57 Aligned_cols=309 Identities=10% Similarity=-0.006 Sum_probs=162.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhH
Q 036661 28 EAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDC 107 (615)
Q Consensus 28 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 107 (615)
...+.|++..+..+...+...-+.|- ..|..+...+ ......++...+.+-. +.+.....-+.-+..+.+.+++..
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCCHHH
Confidence 34556888877777666643211111 1232222211 1123444444443321 112223344566777888899999
Q ss_pred HHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHH--HHHHHHHHhc
Q 036661 108 AYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK--SVHSFGIHIG 185 (615)
Q Consensus 108 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~ 185 (615)
....+.. ...+...-.....+....|+..+|......+-..| .........++..+...|.+.... +=++.+...|
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~ 168 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG 168 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 9998877 43344444456778888999888888888877766 334556666777776666543322 2222222221
Q ss_pred -----------CCCccc-hHHHHHHHHHccCCHHHHHHHHHhcccCCCCcch---HHHHHHHHhcCCChhhHHHHHHHHH
Q 036661 186 -----------VDADVS-VCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVS---WNSIIGGCTYGDKFDDSLNFYRHMI 250 (615)
Q Consensus 186 -----------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~ 250 (615)
++++.. ....++..+. +...+....... .++... +...+.-+.+ .+.+.|...+....
T Consensus 169 ~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~---~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~ 241 (618)
T 1qsa_A 169 NTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT---GATDFTRQMAAVAFASVAR-QDAENARLMIPSLA 241 (618)
T ss_dssp CHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS---CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc---CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhh
Confidence 111111 0111111111 112222222111 111111 1112222333 37789999998886
Q ss_pred HCCCCCCHHh----HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc--
Q 036661 251 YDGFRPDVTT----VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTR-- 324 (615)
Q Consensus 251 ~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 324 (615)
.... .+... ...+.......+....+...+...... ..+.......+....+.|+++.|...|..+.....
T Consensus 242 ~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~ 318 (618)
T 1qsa_A 242 QAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEK 318 (618)
T ss_dssp HHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGS
T ss_pred hccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccccc
Confidence 5432 23222 222333445555344555555554332 34444455555566678999999999999965422
Q ss_pred -ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661 325 -VSWTAMISGYAQKGDLDEALRLFFAMEA 352 (615)
Q Consensus 325 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 352 (615)
...-=+.+++...|+.++|..+|..+..
T Consensus 319 ~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 319 DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 1223345677789999999999999874
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.59 E-value=3.6 Score=42.67 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHhcCCCCCh--HHH--HHHHHHHHhcC-ChHHHHHHHHHHHHc------CCCCCHH--
Q 036661 396 VCNALIDMYSKCGS-IGDARELFYALPEKTV--VSW--TTMIAGCALNG-EFVEALDLFHQMMEL------DLRPNRV-- 461 (615)
Q Consensus 396 ~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~--~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~p~~~-- 461 (615)
....++..+...++ .+.|..+|+++...++ ..+ ..++..+...+ +--+|.+++.+..+. ...+...
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455555555666 4778888887765333 222 12222222222 223466666665531 1122110
Q ss_pred ---------HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 462 ---------TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 462 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
....-..-|...|+++-|+++-++... ..|+ ..+|..|+.+|...|+++.|+-.++.++
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111112345567888888888888874 3454 5788888899999999999988888887
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.56 E-value=0.48 Score=41.49 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=29.6
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661 506 LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560 (615)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 560 (615)
+.+.|++++|++.+..-. ..| |...-..++..++-.|++++|.+-++-..+++|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 445566666655554443 333 3334444555555566666666666666666655
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.13 E-value=4.1 Score=29.32 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661 440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD 504 (615)
Q Consensus 440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 504 (615)
|.-+..+-++.+...++-|++......+++|.+.+++..|.++++.++.+.+-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566667777777788888888888888888888888888888887653332 445655543
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.96 E-value=24 Score=33.37 Aligned_cols=126 Identities=10% Similarity=-0.026 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CcccHHHHHHHHHhcCC-hhHHHHHHHHHHH----CCC-CCCH
Q 036661 294 SVINTLISMYSKCGDIDSARFLFDGMCDR--------TRVSWTAMISGYAQKGD-LDEALRLFFAMEA----AGE-VPDL 359 (615)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~----~~~-~~~~ 359 (615)
.....|...|.+.|+.++..+++....+- .......++..+....+ .+.-.++..+..+ ..- -...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999888888776321 11234455555555322 2333333333222 100 0000
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhc--CCCCc---hHHHHHHHHHHHhcCChHHHHHHHhc
Q 036661 360 VTVLSMISGCGQSGALELGKWFDNYACSG--GLKDN---VMVCNALIDMYSKCGSIGDARELFYA 419 (615)
Q Consensus 360 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 419 (615)
..=..+...|...|++.+|..++..+.+. ..... ..++..-++.|...+++.++...+..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 01124555566666666666666665541 11111 12333444556666666666655544
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.37 E-value=11 Score=26.88 Aligned_cols=86 Identities=13% Similarity=0.024 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661 375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL 454 (615)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 454 (615)
.++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.+|-. .+.|-.+++..-+.++...
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3455555555544432 22222223445678899999999999999899998877654 4678888888877788877
Q ss_pred CCCCCHHHHHH
Q 036661 455 DLRPNRVTFLA 465 (615)
Q Consensus 455 ~~~p~~~~~~~ 465 (615)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 665555543
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.67 E-value=10 Score=27.33 Aligned_cols=47 Identities=2% Similarity=-0.148 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661 137 EKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIH 183 (615)
Q Consensus 137 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 183 (615)
-+..+-++.+....+.|++....+.+++|.+.+++..|.++++..+.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455555555556677777777777777777777777777666654
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.61 E-value=12 Score=26.76 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661 375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL 454 (615)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 454 (615)
.++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.+|-. .+.|-.+++..-+.++...
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3455555554444432 22222222345678899999999999988899988877654 3667777777777777777
Q ss_pred CCCCCHHHHHH
Q 036661 455 DLRPNRVTFLA 465 (615)
Q Consensus 455 ~~~p~~~~~~~ 465 (615)
| .|....|..
T Consensus 99 g-~p~~q~Fa~ 108 (116)
T 2p58_C 99 Q-DPRIQTFVN 108 (116)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.50 E-value=8 Score=29.56 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661 441 FVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD 504 (615)
Q Consensus 441 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 504 (615)
.-+..+-++.+...++-|++......+++|.+.+++..|.++|+-++.+.+ +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 345556666677777888888888888888888888888888888876433 33445655553
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.45 E-value=6.7 Score=37.88 Aligned_cols=61 Identities=5% Similarity=-0.070 Sum_probs=32.1
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQ-VNPELNHYSCMADLLGRKGKLKEALDFVQSM 522 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (615)
+...+..-|.+.|+++.|.+.+.++..... ...-...+...++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444555556666666666666666554311 1111334555555555566666665555554
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.56 E-value=41 Score=30.45 Aligned_cols=169 Identities=9% Similarity=-0.016 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHH----HHHHHHHCCCCCCHHHHHHHHHhhc
Q 036661 295 VINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALR----LFFAMEAAGEVPDLVTVLSMISGCG 370 (615)
Q Consensus 295 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~~~~ 370 (615)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-. +++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 366777788888999999988643 2445566777665555 4555566788899888887777765
Q ss_pred ccchhh-HHHHHHHHHHh----cC--CCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhc---CC
Q 036661 371 QSGALE-LGKWFDNYACS----GG--LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALN---GE 440 (615)
Q Consensus 371 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 440 (615)
.-...+ .-..+++.+++ .| ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533111 12344444443 22 2346778888899999999999998877633222444444444433332 22
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 036661 441 FVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKV 489 (615)
Q Consensus 441 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 489 (615)
..++-- ..-..++ -|.-.++...|..+++...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222111 1111122 344567888888888877644
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.02 E-value=17 Score=30.32 Aligned_cols=49 Identities=6% Similarity=-0.164 Sum_probs=31.2
Q ss_pred CChHHHHHHHHhCC----CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661 510 GKLKEALDFVQSMP----IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELE 558 (615)
Q Consensus 510 g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 558 (615)
+...++.++|.-|. ..--...|...+..+-..|++++|.++|+..++..
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33556666665553 23345566666677777778888888887777643
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.52 E-value=39 Score=28.24 Aligned_cols=90 Identities=11% Similarity=0.031 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH 472 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 472 (615)
+..+-...+.++.+.++.+....+.+.+..++...-...+.++...++.+ +...+..+.+ .++...-...+.++.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33333444444444444433333333344455544444555555544432 2333333332 3444444444444444
Q ss_pred cCchHHHHHHHHHHH
Q 036661 473 AGFLEKGWGYFNLMT 487 (615)
Q Consensus 473 ~~~~~~a~~~~~~~~ 487 (615)
.+. .++...+..+.
T Consensus 170 ~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 170 IGG-ERVRAAMEKLA 183 (211)
T ss_dssp HCS-HHHHHHHHHHH
T ss_pred hCc-hhHHHHHHHHH
Confidence 443 33334444443
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.82 E-value=23 Score=34.15 Aligned_cols=96 Identities=7% Similarity=-0.058 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCC------CChHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHH--H
Q 036661 395 MVCNALIDMYSKCGSIGDARELFYALPE------KTVVSWTTMIAGCALNGEFVEALDLFHQMME---LDLRPNRVT--F 463 (615)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~--~ 463 (615)
.+...+...|.+.|+++.|.+.+.++.. .-+..+..+++.+...+++..+...+++... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566788889999999999999887654 2345777788888889999999988888765 232333321 2
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhh
Q 036661 464 LAVLQACTHAGFLEKGWGYFNLMTKVY 490 (615)
Q Consensus 464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 490 (615)
..-+..+...+++..|...|-++...+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 222334567788999999998888654
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.77 E-value=23 Score=25.33 Aligned_cols=86 Identities=10% Similarity=0.022 Sum_probs=61.2
Q ss_pred CCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 036661 68 SDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMR 147 (615)
Q Consensus 68 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 147 (615)
...++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+..+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456777777777776653 22233333556788899999999999999999999987765 46788888888887877
Q ss_pred HcCCcCChhHH
Q 036661 148 LVGIQADFVTV 158 (615)
Q Consensus 148 ~~~~~p~~~~~ 158 (615)
..| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 766 3433333
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.93 E-value=25 Score=25.25 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=57.5
Q ss_pred CCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 036661 68 SDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMR 147 (615)
Q Consensus 68 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 147 (615)
...++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++...+..+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456777777777776653 222333335567788999999999999999999999877654 6677778877777777
Q ss_pred HcC
Q 036661 148 LVG 150 (615)
Q Consensus 148 ~~~ 150 (615)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 665
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.63 E-value=44 Score=27.95 Aligned_cols=154 Identities=16% Similarity=0.016 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhc
Q 036661 291 LDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCG 370 (615)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 370 (615)
++..+....+..+.+.++.+....+.+.+..++...-...+.++.+.++.+ +...+.++.. .++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344444455555555555444444444445555555555555555555533 3333333332 355555556666666
Q ss_pred ccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661 371 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQ 450 (615)
Q Consensus 371 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 450 (615)
..++.+.. ..+..+.+ .++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+. ..+...+..
T Consensus 107 ~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~ 181 (211)
T 3ltm_A 107 QIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 181 (211)
T ss_dssp HHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 66554333 33333332 45666666677777777776555555555556777777777777777765 455666666
Q ss_pred HHH
Q 036661 451 MME 453 (615)
Q Consensus 451 ~~~ 453 (615)
+.+
T Consensus 182 ~l~ 184 (211)
T 3ltm_A 182 LAE 184 (211)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.90 E-value=27 Score=26.76 Aligned_cols=59 Identities=3% Similarity=-0.099 Sum_probs=36.8
Q ss_pred HHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHH
Q 036661 138 KVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 197 (615)
Q Consensus 138 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 197 (615)
+..+-++.+....+.|++......+++|.+.+|+..|.++++..+..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344555555566677777777777777777777777777777665432 22334455444
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.60 E-value=78 Score=29.31 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCh---HHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHH
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPEKTV---VSWTTMIAGCALNGE--FVEALDLFHQMMELDLRPNRVT 462 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~ 462 (615)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+....++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 46678888899999999999999887642 234444444444333 3457777788887775444333
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.71 E-value=59 Score=28.50 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=25.8
Q ss_pred HHHHHccCCHHHHHHHHHhcccC--CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC
Q 036661 197 ISAYAKCNDLKMAELVFRGIEEG--LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD 257 (615)
Q Consensus 197 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 257 (615)
+...+..|+.+-...+++..... ..+....+.+..+ +..+......++++.+.+.|..++
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCC
Confidence 34444556666665555542211 1222222222222 233444444555555555554443
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.37 E-value=79 Score=28.91 Aligned_cols=168 Identities=14% Similarity=0.044 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHhhc
Q 036661 295 VINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRL----FFAMEAAGEVPDLVTVLSMISGCG 370 (615)
Q Consensus 295 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~ 370 (615)
.|.++..-|.+.+++++|.+++-. -...+.+.|+...+-++ ++-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 466777788899999999988633 23455666776555444 455566788899888877777766
Q ss_pred ccchhh-HHHHHHHHHHh----cC--CCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHH
Q 036661 371 QSGALE-LGKWFDNYACS----GG--LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVE 443 (615)
Q Consensus 371 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 443 (615)
.....+ .-..+.+.+++ .| ..-++.....+...|.+.+++.+|+..|---..+++..+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 554321 11334444433 22 234667778888999999999999988853232333555444444333332111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 036661 444 ALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK 488 (615)
Q Consensus 444 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 488 (615)
++...-..++ -|.-.++...|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1112222222 34455777888777666554
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.67 E-value=59 Score=26.83 Aligned_cols=152 Identities=14% Similarity=-0.011 Sum_probs=74.4
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 036661 393 NVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH 472 (615)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 472 (615)
+..+-...+..+.+.+..+....+.+.+..++.......+.++...++.+ +...+..+.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33333334444444444444444444454555555555555666555543 2333333332 4555555555555555
Q ss_pred cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661 473 AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAY 552 (615)
Q Consensus 473 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 552 (615)
.++.+ +...+..+.. .++..+-...+.++.+.|+. ++...+..+...++...-...+.+....|+ +++...+.
T Consensus 103 ~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~ 175 (201)
T 3ltj_A 103 IGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 175 (201)
T ss_dssp HCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred hCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 55533 3333333332 35555555566666666653 344444444445555555555555555554 34455555
Q ss_pred HHh
Q 036661 553 RLF 555 (615)
Q Consensus 553 ~~~ 555 (615)
.++
T Consensus 176 ~~l 178 (201)
T 3ltj_A 176 KLA 178 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.10 E-value=60 Score=26.75 Aligned_cols=85 Identities=11% Similarity=0.036 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchH
Q 036661 398 NALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLE 477 (615)
Q Consensus 398 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 477 (615)
...+.++.+.++.+....+.+.+..++...-...+.++...++.+ +...+..+.. .++...-...+.++...|. .
T Consensus 94 ~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 94 QSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 333344444444333333333333444444444444444444422 2333333332 3444444444444444443 3
Q ss_pred HHHHHHHHHH
Q 036661 478 KGWGYFNLMT 487 (615)
Q Consensus 478 ~a~~~~~~~~ 487 (615)
++...+..+.
T Consensus 169 ~~~~~L~~~l 178 (201)
T 3ltj_A 169 RVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444444
No 280
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=64.07 E-value=25 Score=30.74 Aligned_cols=92 Identities=12% Similarity=-0.025 Sum_probs=49.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCccc-------HHHHHHHHH--hcCCchhHhHHHHHHhhcC---------CC
Q 036661 25 QIREAVDKNEAHKALLLFRRMKKNDIEPNNLT-------FPFIAKACA--KLSDFLYSQMIHGHIVKSP---------FW 86 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~ 86 (615)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34556677888888888887777666665332 233333332 5677777766666543311 00
Q ss_pred -CChHHHHHHHHHhhcCCChhHHHHhhccCCC
Q 036661 87 -SDIFVQTTMVDMYAKCDRLDCAYKLFDKMPD 117 (615)
Q Consensus 87 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 117 (615)
.+..-.+ .+...+..|+.+-+.-+++.-..
T Consensus 88 ~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 88 DVYYRGQT-ALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp CSSEESBC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccCCCC-HHHHHHHcCCHHHHHHHHhCCCC
Confidence 0111122 23334455777766666665433
No 281
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=63.06 E-value=44 Score=30.20 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcc---cHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHH
Q 036661 296 INTLISMYSKCGDIDSARFLFDGMCDRTRV---SWTAMISGYAQKGD--LDEALRLFFAMEAAGEVPDLVT 361 (615)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 361 (615)
...++.-|...|+.++|.+.++++..|... ....+..++-+.++ .+....++..+...|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456888888899999999999999766221 23333333433333 3556778888877765544443
No 282
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=62.15 E-value=1.4e+02 Score=30.41 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=25.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcC
Q 036661 195 TWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYG 236 (615)
Q Consensus 195 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~ 236 (615)
.++-.+.|+|++++|.++.++...... -...+..++..|+.+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 345667889999999998887764321 124566666666643
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.98 E-value=41 Score=26.52 Aligned_cols=47 Identities=15% Similarity=0.062 Sum_probs=21.9
Q ss_pred HHHHHHHHhccC--CCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661 547 GEYVAYRLFELE--PHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 547 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
+..+|+.+.... -..+..|...+..+...|++++|.++|+.-.+.+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 444444444322 23334444555555555555555555554444433
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.31 E-value=52 Score=25.10 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHH
Q 036661 296 INTLISMYSKCGDIDSARFLFDGMCDRTR---VSWTAMISGYAQKGD--LDEALRLFFAMEAAGEVPDLVT 361 (615)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 361 (615)
...++.-|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 46688888899999999999999865522 123334444444432 3567778888877775544433
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=56.33 E-value=42 Score=27.64 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=40.9
Q ss_pred hHHHHHHHHhCCCCCChh-------hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHH
Q 036661 512 LKEALDFVQSMPIKSDAG-------IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVA 582 (615)
Q Consensus 512 ~~~A~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 582 (615)
.+.|+.+|+.+...-+.. .-...+..|.+.|.+++|.+++++.+..+|.+...-.-|..+-.+..-+..-+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 356777777776222211 11234466888999999999999988888776666666666555555444433
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.06 E-value=84 Score=26.64 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=17.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 036661 25 QIREAVDKNEAHKALLLFRRMKKNDIEPN 53 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 53 (615)
.+...++.|+.+-+..+++.+.+.|..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 45555666777766666666666555444
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.82 E-value=49 Score=32.40 Aligned_cols=63 Identities=5% Similarity=0.065 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh--hH-HHHHHHHHHhcCChHHHHHHHHhCC
Q 036661 461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL--NH-YSCMADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (615)
..++.+++.|...+.++.|..+..+..--....++. .. +-.+++.+.-.+++.+|.+.+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 467778888888888888888888764100000111 11 2234566777788888888877654
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.40 E-value=55 Score=28.18 Aligned_cols=87 Identities=8% Similarity=-0.013 Sum_probs=41.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHc--CCcC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHH
Q 036661 126 MIVGFAQMGFLEKVLCLFYNMRLV--GIQA----DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISA 199 (615)
Q Consensus 126 li~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (615)
-++.+....++++|++++++..+. ++++ +.......++.-.....-..+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467778888888888888776542 1221 111222223332222222233333333311 2333444445555
Q ss_pred HHccCCHHHHHHHHHh
Q 036661 200 YAKCNDLKMAELVFRG 215 (615)
Q Consensus 200 ~~~~~~~~~A~~~~~~ 215 (615)
+.+.|+.++|..+|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 5666666666655543
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.35 E-value=1.2e+02 Score=26.91 Aligned_cols=143 Identities=10% Similarity=-0.065 Sum_probs=66.1
Q ss_pred HHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCC---CchhHHHHHHHHHhcCCh
Q 036661 60 IAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDR---DVASWNAMIVGFAQMGFL 136 (615)
Q Consensus 60 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 136 (615)
.+...+..|+.+.+..+++. |..++..--...+...+..|+.+-+..+++.-..+ +..-++.|. ..+..|+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~ 108 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY-YAVDSGNM 108 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCH
Confidence 34444556776655555443 33222221123344456667777777777654332 222233333 33455654
Q ss_pred HHHHHHHHHhHHcCCcCChhH---HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccc-hHHHHHHHHHccCCHHHHHHH
Q 036661 137 EKVLCLFYNMRLVGIQADFVT---VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVS-VCNTWISAYAKCNDLKMAELV 212 (615)
Q Consensus 137 ~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 212 (615)
+- ++.+.+.|..++... +...+...+..|+.+- .+.+++.|..+... .-.+.+...+..|+.+-+.-+
T Consensus 109 ~~----v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 109 QT----VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HH----HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred HH----HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 43 333344454444322 1233444445555443 33444444333221 333444555566776666655
Q ss_pred HHh
Q 036661 213 FRG 215 (615)
Q Consensus 213 ~~~ 215 (615)
++.
T Consensus 181 l~~ 183 (285)
T 3kea_A 181 LDY 183 (285)
T ss_dssp HHH
T ss_pred HHc
Confidence 544
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.89 E-value=45 Score=28.72 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=43.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--cCCCC----CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661 431 MIAGCALNGEFVEALDLFHQMME--LDLRP----NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD 504 (615)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~~~--~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 504 (615)
-++.+....++++|..++++..+ .++++ +.......+..-.....-.-+..+.+.+. -.++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~----~~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL----SSNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH----TCSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHH
Confidence 35566666777777777666544 12221 11111222222222112222223333332 1444555666778
Q ss_pred HHHhcCChHHHHHHHHhC
Q 036661 505 LLGRKGKLKEALDFVQSM 522 (615)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~ 522 (615)
.+.+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888888888888887543
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.83 E-value=55 Score=26.23 Aligned_cols=60 Identities=8% Similarity=0.041 Sum_probs=32.7
Q ss_pred CChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661 510 GKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY 572 (615)
Q Consensus 510 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 572 (615)
++..+....+..-. ..--...|...+..+-..|++.+|.++|+..++.. +.....|-..|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~---A~P~~~L~~~~ 137 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK---AEPLERLQSQH 137 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHH
Confidence 44444433333322 23344566666666667777777777777777644 23344444443
No 292
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=53.24 E-value=1e+02 Score=26.00 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=39.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChH--HHHHHHHHhh
Q 036661 25 QIREAVDKNEAHKALLLFRRMKKNDIEPNNLT--FPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIF--VQTTMVDMYA 100 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 100 (615)
.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+.+..+ .+.|..++.. .-...+...+
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL----IKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH----HTTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHH----HhCCCCCCCCCCCCCcHHHHHH
Confidence 445556667765 3444445555544321 12334444455666544433 3444332221 1112233445
Q ss_pred cCCChhHHHHhhccC
Q 036661 101 KCDRLDCAYKLFDKM 115 (615)
Q Consensus 101 ~~g~~~~a~~~~~~~ 115 (615)
..|+.+-+..+++.-
T Consensus 86 ~~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNG 100 (237)
T ss_dssp HTTCHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHhCC
Confidence 567777776666654
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.08 E-value=44 Score=26.43 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHH
Q 036661 296 INTLISMYSKCGDIDSARFLFDGMCDRTR---VSWTAMISGYAQKGD--LDEALRLFFAMEAAGEVPDLVT 361 (615)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 361 (615)
...++.-|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 56688888899999999999999865522 123334444444322 4567778888877775544433
No 294
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=52.99 E-value=27 Score=34.23 Aligned_cols=57 Identities=14% Similarity=0.045 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 532 GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
..++...+-...++.|...|+++..+.|++...|..||-+....|+.-+|.=+|-+.
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 334444555566677777888888888877777777777777777766666555444
No 295
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=52.37 E-value=2.1e+02 Score=29.24 Aligned_cols=80 Identities=18% Similarity=0.115 Sum_probs=35.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhh---ccCc
Q 036661 400 LIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDL-RPNRVTFLAVLQACT---HAGF 475 (615)
Q Consensus 400 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~---~~~~ 475 (615)
...++.-.|+++.|.+.+-.....+.+.+...+. ..|-... -+.+..... .| ..-+..|+..|. +..+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~---~~gLL~~----~~~lls~~~~~~-~lN~arLI~~Yt~~F~~td 371 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLA---SLKLFKI----DSSTRLTKKPKR-DIRFANILANYTKSFRYSD 371 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHH---HTTC----------------------CHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHH---HcCCccC----CCcccccCCCcc-cccHHHHHHHHHHHhhcCC
Confidence 4455566788888888776552112222222221 1222211 111111100 11 123555666554 4578
Q ss_pred hHHHHHHHHHHH
Q 036661 476 LEKGWGYFNLMT 487 (615)
Q Consensus 476 ~~~a~~~~~~~~ 487 (615)
..+|+++|--+.
T Consensus 372 ~~~Al~Y~~li~ 383 (661)
T 2qx5_A 372 PRVAVEYLVLIT 383 (661)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHh
Confidence 888888877663
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.72 E-value=23 Score=34.58 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----hh--h-HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661 496 LNHYSCMADLLGRKGKLKEALDFVQSMPIKSD----AG--I-WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA 563 (615)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~--~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 563 (615)
...++.+++.|...+.++.|..+..+...+.. .. . +..++..+.-.+++.+|.+.+..+++.-|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 45688888999999999999999988863221 11 1 122345566788999999999999988876543
No 297
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=46.64 E-value=1.1e+02 Score=24.56 Aligned_cols=83 Identities=11% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHh--ccC----------------CCCCC
Q 036661 502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLF--ELE----------------PHSAA 563 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~----------------p~~~~ 563 (615)
+.-.+.-.|.+..++-++.... .....---.-++.+.+++..|...++.++ +.+ .+...
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~lN---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf 115 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKLN---TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF 115 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH
T ss_pred hhhhhhhcchHhHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHH
Q ss_pred ChHhHHHHHHccCChHHHHHHHHH
Q 036661 564 PYVEMANIYALGGRWDGVANLRTM 587 (615)
Q Consensus 564 ~~~~l~~~~~~~g~~~~A~~~~~~ 587 (615)
.+..++.++...|+.+||+..+..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhh
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.43 E-value=94 Score=26.20 Aligned_cols=83 Identities=7% Similarity=-0.087 Sum_probs=37.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCC
Q 036661 27 REAVDKNEAHKALLLFRRMKKNDIEPNNL--TFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDR 104 (615)
Q Consensus 27 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 104 (615)
...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+.+..+++.-.......+..-. ..+...+..|+
T Consensus 14 ~~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-t~L~~A~~~~~ 88 (240)
T 3eu9_A 14 VKATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS-TPLHWATRQGH 88 (240)
T ss_dssp HHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTB-CHHHHHHHHTC
T ss_pred HHHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCC-ChhHHHHHcCC
Confidence 3445666665544444 445444332 1223455556667765554444332211111111111 22334445566
Q ss_pred hhHHHHhhcc
Q 036661 105 LDCAYKLFDK 114 (615)
Q Consensus 105 ~~~a~~~~~~ 114 (615)
.+-+..+++.
T Consensus 89 ~~~v~~Ll~~ 98 (240)
T 3eu9_A 89 LSMVVQLMKY 98 (240)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6666666654
No 299
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.37 E-value=1.6e+02 Score=25.71 Aligned_cols=91 Identities=9% Similarity=-0.024 Sum_probs=41.4
Q ss_pred CChhHHHHHHHHHHhcC-ChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661 494 PELNHYSCMADLLGRKG-KLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY 572 (615)
Q Consensus 494 ~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 572 (615)
++..+-...+.++.+.| ...++...+..+...++...-...+.+....|+. .+...+.+.++- | .+....+.++
T Consensus 171 ~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~-~~~~~L~~~l~d-~---~vr~~a~~aL 245 (280)
T 1oyz_A 171 PNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK-RVLSVLCDELKK-N---TVYDDIIEAA 245 (280)
T ss_dssp SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG-GGHHHHHHHHTS-S---SCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCH-hhHHHHHHHhcC-c---cHHHHHHHHH
Confidence 34333334444444443 2234444444444344554444555555555533 233333333321 2 2444555566
Q ss_pred HccCChHHHHHHHHHHHh
Q 036661 573 ALGGRWDGVANLRTMMKR 590 (615)
Q Consensus 573 ~~~g~~~~A~~~~~~~~~ 590 (615)
.+.|. +++...+.++.+
T Consensus 246 ~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 246 GELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHCC-GGGHHHHHHHHT
T ss_pred HhcCc-hhhhHHHHHHHh
Confidence 66665 345555555544
No 300
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.98 E-value=1.6e+02 Score=27.08 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcc---cHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCC
Q 036661 296 INTLISMYSKCGDIDSARFLFDGMCDRTRV---SWTAMISGYAQK-GDLDEALRLFFAMEAAGEVP 357 (615)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~ 357 (615)
...++.-|...|+.++|...++++..|... ....+..++-+. ...+.+..++..+.+.|+-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 456788888889999999999998665321 111111122111 12345566667776666433
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.07 E-value=1.6e+02 Score=24.74 Aligned_cols=188 Identities=9% Similarity=0.009 Sum_probs=95.6
Q ss_pred HHHHHHhcCCchhHhHHHHHHhhcCCCCChH--HHHHHHHHhhcCCChhHHHHhhccCCCC---CchhHHHHHHHHHhcC
Q 036661 60 IAKACAKLSDFLYSQMIHGHIVKSPFWSDIF--VQTTMVDMYAKCDRLDCAYKLFDKMPDR---DVASWNAMIVGFAQMG 134 (615)
Q Consensus 60 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 134 (615)
.+...+..|+.+.+..+++.+...+..++.. .-...+...+..|+.+-+..+++.-..+ +..-++. +...+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcC
Confidence 3445566688888888888766665444322 1122344556678888777777754433 2222333 33445677
Q ss_pred ChHHHHHHHHHhHHcCCcCChh--HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccc---hHHHHHHHHHccCCHHHH
Q 036661 135 FLEKVLCLFYNMRLVGIQADFV--TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVS---VCNTWISAYAKCNDLKMA 209 (615)
Q Consensus 135 ~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A 209 (615)
+.+-+..+++.....++.++.. .-...+...+..|+.+ +.+.+++.|..++.. .-.+.+...+..|+.+-+
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Confidence 7665555554432211122211 1112233344556654 445555566555432 234555666778888877
Q ss_pred HHHHHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC
Q 036661 210 ELVFRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD 257 (615)
Q Consensus 210 ~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 257 (615)
..+++.-... .++....+. +...+..|.. ++++.+.+.|..++
T Consensus 167 ~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 167 QLLLQHGANVNAQMYSGSSA-LHSASGRGLL----PLVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHTTCCTTCBCTTSCBH-HHHHHHHTCH----HHHHHHHHTTCCTT
T ss_pred HHHHHcCCCCCCcCCCCCCH-HHHHHHcCCH----HHHHHHHhcCCCCC
Confidence 7777652211 122222222 2223344554 35555566776554
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.66 E-value=1.1e+02 Score=27.02 Aligned_cols=145 Identities=10% Similarity=0.018 Sum_probs=78.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCCh---HHHHHHHHHhhc
Q 036661 25 QIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDI---FVQTTMVDMYAK 101 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 101 (615)
.+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..+++ .|..++. .-.+ .+...+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t-~L~~A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNT-ALYYAVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCc-HHHHHHH
Confidence 455556677776554444 44554544333445666667788775555544 4543332 2223 3344566
Q ss_pred CCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChh-HHHHHHHHHHhcCChhHHHHH
Q 036661 102 CDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFV-TVMGLTQAAIHAKHLSLLKSV 177 (615)
Q Consensus 102 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 177 (615)
.|+.+-+..+++.-.. ++..-|.+.+...+..|+.+ +++.+.+.|..+... .-...+...+..|+.+-+.-+
T Consensus 105 ~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 7888888777776433 23333334455556677754 444455555433221 334445555677777766665
Q ss_pred HHHHH
Q 036661 178 HSFGI 182 (615)
Q Consensus 178 ~~~~~ 182 (615)
++.-.
T Consensus 181 l~~ga 185 (285)
T 3kea_A 181 LDYMT 185 (285)
T ss_dssp HHHHH
T ss_pred HHcCC
Confidence 55433
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.95 E-value=95 Score=26.15 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=7.2
Q ss_pred hhcCCChhHHHHhhcc
Q 036661 99 YAKCDRLDCAYKLFDK 114 (615)
Q Consensus 99 ~~~~g~~~~a~~~~~~ 114 (615)
.++.|+.+-+..+++.
T Consensus 49 A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 49 AAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHc
Confidence 3444454444444443
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.67 E-value=35 Score=26.74 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=25.8
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCC
Q 036661 45 MKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDR 104 (615)
Q Consensus 45 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 104 (615)
+++.|.++.. .-..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 10 L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3444444322 2233344444444 44555555555554444444443344444544443
No 305
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.57 E-value=1.9e+02 Score=25.06 Aligned_cols=84 Identities=10% Similarity=-0.054 Sum_probs=37.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChH--HHHHHHHH
Q 036661 24 SQIREAVDKNEAHKALLLFRRMKKNDIEPNNL---TFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIF--VQTTMVDM 98 (615)
Q Consensus 24 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 98 (615)
+.+...++.|+.+-...++ +.|..++.. .-.+.+...+..|+.+-+..+ ++.|..++.. .-...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELL----LRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCHHHH
Confidence 3455556666665444433 344443322 112344444555665544333 3334333221 11122333
Q ss_pred hhcCCChhHHHHhhccC
Q 036661 99 YAKCDRLDCAYKLFDKM 115 (615)
Q Consensus 99 ~~~~g~~~~a~~~~~~~ 115 (615)
.+..|+.+-+..+++.-
T Consensus 79 A~~~~~~~~v~~Ll~~g 95 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKG 95 (285)
T ss_dssp HHHHTCHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 44556666666666553
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.73 E-value=1.2e+02 Score=25.41 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=13.4
Q ss_pred HHHHHhcCChHHHHHHHHhCC
Q 036661 503 ADLLGRKGKLKEALDFVQSMP 523 (615)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~ 523 (615)
+-.|.+.|.+++|.+++++..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHhcchHHHHHHHHHHh
Confidence 344566677777777776655
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.64 E-value=2.2e+02 Score=25.63 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=34.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhcccCCCC--cchHHHHHHHHhcCCC--hhhHHHHHHHHHH
Q 036661 193 CNTWISAYAKCNDLKMAELVFRGIEEGLRT--VVSWNSIIGGCTYGDK--FDDSLNFYRHMIY 251 (615)
Q Consensus 193 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 251 (615)
...++.-|...|+.++|...++++. .|. ......++......++ .+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~--~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN--LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC--CGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4677888889999999999999987 343 2222333333333333 2334456666653
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.81 E-value=1.7e+02 Score=31.68 Aligned_cols=27 Identities=4% Similarity=-0.356 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661 530 IWGTLLCACKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 556 (615)
.|..++..+-+++-++-+.++.+.+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 445555556666667777766666665
No 309
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=36.14 E-value=1.5e+02 Score=22.82 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=5.7
Q ss_pred hcCCChhHHHHhhc
Q 036661 100 AKCDRLDCAYKLFD 113 (615)
Q Consensus 100 ~~~g~~~~a~~~~~ 113 (615)
+..|+.+-+..+++
T Consensus 43 ~~~~~~~~v~~Ll~ 56 (156)
T 1bd8_A 43 MMFGSTAIALELLK 56 (156)
T ss_dssp SCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33344444444433
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.62 E-value=1.3e+02 Score=23.35 Aligned_cols=63 Identities=5% Similarity=-0.069 Sum_probs=42.7
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChh
Q 036661 43 RRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLD 106 (615)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 106 (615)
+.+++.|.++++ .-..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 11 ~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 446667776443 345666666666677788888888887776666666666677777776543
No 311
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=35.19 E-value=3.2e+02 Score=26.91 Aligned_cols=68 Identities=9% Similarity=-0.125 Sum_probs=43.7
Q ss_pred CCCChhhHHHHHHHHHHhCChhHHHHH----HHHHh-ccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661 524 IKSDAGIWGTLLCACKIHRNIEIGEYV----AYRLF-ELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591 (615)
Q Consensus 524 ~~p~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 591 (615)
..+|......+..-+..+|-.++-+++ ++.-+ +..|++......|..-|.+.|++-+|.+++-.+...
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 445666666666667777665553321 11111 234666777778888899999999999999998876
No 312
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=34.81 E-value=2.8e+02 Score=25.66 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036661 296 INTLISMYSKCGDIDSARFLFDGMCDRTR---VSWTAMISGYAQKGD--LDEALRLFFAMEAAGEVPDLVTVLSMI 366 (615)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll 366 (615)
...++.-|...++.++|...++++..|.. .....+..++-+.++ .+...+++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 45688888999999999999999976632 233334444444333 356778888888777655544433333
No 313
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=34.48 E-value=2.3e+02 Score=24.65 Aligned_cols=162 Identities=9% Similarity=-0.001 Sum_probs=76.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 036661 431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH-AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK 509 (615)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 509 (615)
++...-+.+++++..+..+++.+.+...+..--+.|-.+|-+ .|....+++++..+.++.....+. ....++.-|...
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~-~~~~~i~~yr~k 115 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGE-DKLKMIREYRQM 115 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccH-HHHHHHHHHHHH
Confidence 345556677788877777777777666665555544444432 233344555555444321111111 111222222111
Q ss_pred ------CChHHHHHHHHhCC----CCCChhhH-HHHH-HHHH----------HhCChhHHHHHHHHHhc-----cCCCCC
Q 036661 510 ------GKLKEALDFVQSMP----IKSDAGIW-GTLL-CACK----------IHRNIEIGEYVAYRLFE-----LEPHSA 562 (615)
Q Consensus 510 ------g~~~~A~~~~~~~~----~~p~~~~~-~~l~-~~~~----------~~~~~~~A~~~~~~~~~-----~~p~~~ 562 (615)
.--.+.++++++.. ..+...++ ..+- ..|+ +..-.+.|.+.|+++.+ +.|.+|
T Consensus 116 Ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThP 195 (261)
T 3ubw_A 116 VETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHP 195 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 00123444554442 11212111 1111 1111 11123566677777654 556655
Q ss_pred CChHhH----HHHHHccCChHHHHHHHHHHHhcCc
Q 036661 563 APYVEM----ANIYALGGRWDGVANLRTMMKRNQV 593 (615)
Q Consensus 563 ~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~ 593 (615)
.-+-.. +-.|.-.++.++|.++-++.-+..+
T Consensus 196 irLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 196 IRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 322221 2235567999999888877766544
No 314
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.20 E-value=2e+02 Score=23.88 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 036661 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE 495 (615)
Q Consensus 427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 495 (615)
.|-..+..+ ..+...++..+|..|...|+--.. ..|......+...|++.+|.++|+.-++. +..|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 444444433 133356777888888877765543 45666677777788888888888877754 54554
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.32 E-value=74 Score=26.98 Aligned_cols=81 Identities=17% Similarity=0.105 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc--cCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661 512 LKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE--LEPHSAAPYVEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 512 ~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
.+.+...|.... ...|...+...+...... +++..+|+.+.. +.-..+..|...+..+...|++.+|.++|+.-
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNYI---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHcc---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred HhcCccc
Q 036661 589 KRNQVKK 595 (615)
Q Consensus 589 ~~~~~~~ 595 (615)
.+.+..+
T Consensus 177 i~~~A~P 183 (223)
T 4aez_C 177 KRMKAKP 183 (223)
T ss_dssp HHHTCBS
T ss_pred HHcCCcc
No 316
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.07 E-value=28 Score=22.20 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHHHHhccCCCCCCChHhHHHHH-HccCChHHHHHHHHHHHhcCcccCC
Q 036661 549 YVAYRLFELEPHSAAPYVEMANIY-ALGGRWDGVANLRTMMKRNQVKKFP 597 (615)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~ 597 (615)
+..+.+.++.|+ -....+-.+| ...|+.+.|+..+-.|......++.
T Consensus 11 e~l~~L~emFP~--ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFPN--MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCSS--SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCCC--CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 344445555675 2223333444 4557788888888887766655443
No 317
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.01 E-value=1.4e+02 Score=24.28 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=26.8
Q ss_pred HhhcCCChhHHHHhhccCC-C---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCC
Q 036661 98 MYAKCDRLDCAYKLFDKMP-D---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQAD 154 (615)
Q Consensus 98 ~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 154 (615)
..+..|+.+....++..-. . ++..-++.|.. .++.|+.+ +++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADIN 66 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCC
Confidence 3456688888888877654 2 23333333333 33455543 4444445555444
No 318
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.57 E-value=1.6e+02 Score=22.28 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCh---HHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPEKTV---VSWTTMIAGCALNGE--FVEALDLFHQMMELDLRPN 459 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~ 459 (615)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45677778888999999999988876532 233334444443322 3456677777776664433
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.36 E-value=91 Score=24.24 Aligned_cols=60 Identities=3% Similarity=-0.027 Sum_probs=30.7
Q ss_pred hHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCH
Q 036661 146 MRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDL 206 (615)
Q Consensus 146 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (615)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44555555544332 2333333445556666666666555444555544455555555543
No 320
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.01 E-value=54 Score=23.02 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=11.8
Q ss_pred HhHHHHHHccCChHHHHHHHHHH
Q 036661 566 VEMANIYALGGRWDGVANLRTMM 588 (615)
Q Consensus 566 ~~l~~~~~~~g~~~~A~~~~~~~ 588 (615)
...++.+.+.|+|++|++..++.
T Consensus 19 ~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHH
Confidence 34455555555555555544443
No 321
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.84 E-value=3.3e+02 Score=25.65 Aligned_cols=18 Identities=6% Similarity=0.027 Sum_probs=8.9
Q ss_pred HHHHccCCHHHHHHHHHh
Q 036661 198 SAYAKCNDLKMAELVFRG 215 (615)
Q Consensus 198 ~~~~~~~~~~~A~~~~~~ 215 (615)
...+..|+.+-...+++.
T Consensus 118 ~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 118 HIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 334445555555555543
No 322
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.71 E-value=2e+02 Score=24.52 Aligned_cols=91 Identities=9% Similarity=-0.076 Sum_probs=51.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHhc---CCchhHhHHHHHHhhcCCCC-------
Q 036661 25 QIREAVDKNEAHKALLLFRRMKKNDIEPNN-------LTFPFIAKACAKL---SDFLYSQMIHGHIVKSPFWS------- 87 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~------- 87 (615)
.+...++.|+.+.+..+++.+...|..++. ...+ .+...+.. |+.+-+..+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 455567778888887888887777765554 2233 33333444 77777777666544332111
Q ss_pred ---ChHHHHHHHHHhhcCCChhHHHHhhccCCC
Q 036661 88 ---DIFVQTTMVDMYAKCDRLDCAYKLFDKMPD 117 (615)
Q Consensus 88 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 117 (615)
+..-.+ .+...+..|+.+-+..+++.-..
T Consensus 84 ~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 84 TDEFYQGHS-ALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp CSTTTTTCC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccccCCC-HHHHHHHcCCHHHHHHHHHcCCC
Confidence 111222 23344556777777777766433
No 323
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.16 E-value=1.3e+02 Score=24.53 Aligned_cols=26 Identities=8% Similarity=-0.178 Sum_probs=13.7
Q ss_pred HHhcCChHHHHHHHHHhHHcCCcCCh
Q 036661 130 FAQMGFLEKVLCLFYNMRLVGIQADF 155 (615)
Q Consensus 130 ~~~~g~~~~a~~~~~~m~~~~~~p~~ 155 (615)
.+..|+.+.-.++.+.+.+.|..++.
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 33445555445555556666655543
No 324
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.75 E-value=1.2e+02 Score=20.38 Aligned_cols=59 Identities=7% Similarity=0.188 Sum_probs=33.1
Q ss_pred HhHHcCCcCChhHHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccC
Q 036661 145 NMRLVGIQADFVTVMGLTQAAIHAK-HLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCN 204 (615)
Q Consensus 145 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (615)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3555666665544 34445554443 55667777777766654445555555555555544
No 325
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.68 E-value=2.3e+02 Score=23.47 Aligned_cols=64 Identities=22% Similarity=0.144 Sum_probs=42.1
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccch-----hhHHHHHHHHHHhcCCC
Q 036661 327 WTAMISGYA---QKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGA-----LELGKWFDNYACSGGLK 391 (615)
Q Consensus 327 ~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 391 (615)
+-.+|+++. +..+.+.|+-.+.+|++.| .|....-..++.+....|. ...|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334555554 4688999999999999999 7777777777777666553 23444444444445543
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.63 E-value=1.5e+02 Score=23.15 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=43.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChh
Q 036661 42 FRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLD 106 (615)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 106 (615)
-+.+++.|.++. ..-..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 15 ~~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 344667777643 3455677777777778889999999988776667766666677777777543
No 327
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.19 E-value=1.6e+02 Score=25.26 Aligned_cols=88 Identities=10% Similarity=-0.037 Sum_probs=43.5
Q ss_pred HHHHhcCChHHHHHHHHHhHHcCCcCChhH-------HHHHHHHHH--hcCChhHHHHHHHHHHHhc---------CCCc
Q 036661 128 VGFAQMGFLEKVLCLFYNMRLVGIQADFVT-------VMGLTQAAI--HAKHLSLLKSVHSFGIHIG---------VDAD 189 (615)
Q Consensus 128 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~ 189 (615)
...++.|+.+....+++.+.+.|..++... .+.|..+.. ..|+.+-++.+++.....+ +...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344456777776667776666665544322 233333322 4566666666665543311 1100
Q ss_pred cchHHHHHHHHHccCCHHHHHHHHHh
Q 036661 190 VSVCNTWISAYAKCNDLKMAELVFRG 215 (615)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 215 (615)
...-.+.+...+..|+.+-+.-+++.
T Consensus 90 d~~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 00112334445566777766666654
No 328
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.94 E-value=1.3e+02 Score=23.62 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCh---HHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 036661 397 CNALIDMYSKCGSIGDARELFYALPEKTV---VSWTTMIAGCALNGE--FVEALDLFHQMMELDLRP 458 (615)
Q Consensus 397 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p 458 (615)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45677788888999999999988876532 233334444443222 345666777777666443
No 329
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=28.45 E-value=2.5e+02 Score=24.22 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=51.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC-------CcccHHHHHHHHH--hcCCchhHhHHHHHHhhc---------CC
Q 036661 24 SQIREAVDKNEAHKALLLFRRMKKNDIEP-------NNLTFPFIAKACA--KLSDFLYSQMIHGHIVKS---------PF 85 (615)
Q Consensus 24 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~---------~~ 85 (615)
+.+...++.|+.+.+..+++.....+... +..-.+.|..++. +.|+.+-+..+++.-... +.
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~ 94 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASY 94 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccc
Confidence 45556677889988888888877665433 3334444544443 347777777766654321 11
Q ss_pred C-CChHHHHHHHHHhhcCCChhHHHHhhccCCC
Q 036661 86 W-SDIFVQTTMVDMYAKCDRLDCAYKLFDKMPD 117 (615)
Q Consensus 86 ~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 117 (615)
. .+..-.+. +...+..|+.+-+..+++.-..
T Consensus 95 ~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 95 TDSYYKGQTA-LHIAIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp CSTTTTTCCH-HHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccCCCCCH-HHHHHHcCCHHHHHHHHHCCCC
Confidence 0 11122222 3333456777777766665433
No 330
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.38 E-value=1.4e+02 Score=23.27 Aligned_cols=63 Identities=3% Similarity=0.014 Sum_probs=40.2
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcC-CchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChh
Q 036661 43 RRMKKNDIEPNNLTFPFIAKACAKLS-DFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLD 106 (615)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 106 (615)
+.+++.|.++.. .-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345666766443 3455666666655 66778888888877765566666556667777766543
No 331
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.93 E-value=3.5e+02 Score=24.65 Aligned_cols=39 Identities=8% Similarity=0.084 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCCccch--HHHHHHHHHccCCHHHHHHHHHh
Q 036661 177 VHSFGIHIGVDADVSV--CNTWISAYAKCNDLKMAELVFRG 215 (615)
Q Consensus 177 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~ 215 (615)
+.+.+++.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 155 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 155 MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3333444454443321 12333444556666666555554
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.90 E-value=1.3e+02 Score=22.93 Aligned_cols=61 Identities=3% Similarity=0.002 Sum_probs=36.8
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcC-CchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCCh
Q 036661 44 RMKKNDIEPNNLTFPFIAKACAKLS-DFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRL 105 (615)
Q Consensus 44 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 105 (615)
.+++.|.++.+ .-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35566666433 3445566666555 5667788888877766555666555556666665543
No 333
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.52 E-value=3e+02 Score=23.85 Aligned_cols=22 Identities=9% Similarity=-0.183 Sum_probs=9.6
Q ss_pred HHHHHHhCChhHHHHHHHHHhcc
Q 036661 535 LCACKIHRNIEIGEYVAYRLFEL 557 (615)
Q Consensus 535 ~~~~~~~~~~~~A~~~~~~~~~~ 557 (615)
+.+..+.|+ ..+...+.++++-
T Consensus 242 ~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 242 IEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp HHHHHHHCC-GGGHHHHHHHHTT
T ss_pred HHHHHhcCc-hhhhHHHHHHHhc
Confidence 333444444 2444455555443
No 334
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=27.37 E-value=4e+02 Score=25.11 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=21.4
Q ss_pred ChHhHHHHHHccCChHHHHHHHHHHH
Q 036661 564 PYVEMANIYALGGRWDGVANLRTMMK 589 (615)
Q Consensus 564 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 589 (615)
.+..+++++..+|+.+.|.++++.+.
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~lp 363 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSLP 363 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 45567889999999999999997653
No 335
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.15 E-value=2.7e+02 Score=23.13 Aligned_cols=154 Identities=9% Similarity=-0.042 Sum_probs=70.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHhcCCchhHhHHHHHHhhcCC----CCChHHHHHHHHH
Q 036661 25 QIREAVDKNEAHKALLLFRRMKKNDIEPNNL--TFPFIAKACAKLSDFLYSQMIHGHIVKSPF----WSDIFVQTTMVDM 98 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~ 98 (615)
.+...++.|+.+.+..+++. .|..++.. .-.+.+...+..|+.+.+..+++.-..... ..+..-.+ .+..
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~ 81 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHI 81 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHH
Confidence 34455666776655555543 14333322 112344445566777666666554322100 01111222 2333
Q ss_pred hhcCCChhHHHHhhccCCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhH--HHH
Q 036661 99 YAKCDRLDCAYKLFDKMPDRDV----------------ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVT--VMG 160 (615)
Q Consensus 99 ~~~~g~~~~a~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ 160 (615)
.+..|+.+-+..+++.-..++. .-.+. +...+..|+.+ +++.+.+.|..++... -..
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t 156 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP-LSFAACVGSEE----IVRLLIEHGADIRAQDSLGNT 156 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCC
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCH-HHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCC
Confidence 4556777766666665433221 12222 33333445543 3333444454443221 122
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCC
Q 036661 161 LTQAAIHAKHLSLLKSVHSFGIHIGVD 187 (615)
Q Consensus 161 ll~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (615)
.+...+..|+.+.+..+++.+.+.|..
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 334445556666666666666666543
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.43 E-value=1.4e+02 Score=23.42 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=32.0
Q ss_pred HhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCH
Q 036661 145 NMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDL 206 (615)
Q Consensus 145 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (615)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34555555544333 23344444455666777777776665555555555555666665544
No 337
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.91 E-value=2.9e+02 Score=23.03 Aligned_cols=208 Identities=12% Similarity=0.019 Sum_probs=92.8
Q ss_pred HHHHHHhcCCchhHhHHHHHHhhcCCCCChH--HHHHHHHHhhcCCChhHHHHhhccCCCC---CchhHHHHHHHHHhcC
Q 036661 60 IAKACAKLSDFLYSQMIHGHIVKSPFWSDIF--VQTTMVDMYAKCDRLDCAYKLFDKMPDR---DVASWNAMIVGFAQMG 134 (615)
Q Consensus 60 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 134 (615)
.+...+..|+.+.+..++ +.|..++.. .-...+...+..|+.+-+..+++.-..+ +....+. +...+..|
T Consensus 14 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLV----QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHH----HcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcC
Confidence 445555667776544444 444433321 1112344456678888888887764332 2222333 33344556
Q ss_pred ChHHHHHHHHHhHHcC-CcCChhH--HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccc--hHHHHHHHHHccCCHHHH
Q 036661 135 FLEKVLCLFYNMRLVG-IQADFVT--VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVS--VCNTWISAYAKCNDLKMA 209 (615)
Q Consensus 135 ~~~~a~~~~~~m~~~~-~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A 209 (615)
+.+ +++.+.+.| ..++... -...+...+..|+.+ +.+.+.+.|..++.. .-.+.+...+..|+.+-+
T Consensus 89 ~~~----~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 89 HYE----VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp CHH----HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred CHH----HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence 654 344444444 2222111 112233334455544 444555566555432 122344455566777666
Q ss_pred HHHHHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHh--HHHHHHhccCchhhhhhhHHHHHHH
Q 036661 210 ELVFRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTT--VVSLLSSCVCPEALVQGRLVHSHGI 285 (615)
Q Consensus 210 ~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (615)
..+++.-... ..+....+. +...++.|+.+ +++.+.+.|..++... -.+.+......|+...+.++.+.+.
T Consensus 161 ~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 161 EILLAAKCDLHAVNIHGDSP-LHIAARENRYD----CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHHHTTTCCTTCCCTTCCCH-HHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcCCCCCCH-HHHHHHhCCHh----HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555442211 111111122 22233444443 3344445555443211 1123334445555555555555544
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.82 E-value=67 Score=24.47 Aligned_cols=46 Identities=9% Similarity=-0.086 Sum_probs=25.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 036661 24 SQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSD 69 (615)
Q Consensus 24 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 69 (615)
.+++.+...+..-.|.++++.+.+.++..+..|-...|..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555555556666666666665555555555555555544443
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.52 E-value=2.5e+02 Score=22.28 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCcC--ChhHHHHHHH-HH-----HhcCChhHHHHHHHHHHH
Q 036661 123 WNAMIVGFAQMGFLEKVLCLFYNMRLVGIQA--DFVTVMGLTQ-AA-----IHAKHLSLLKSVHSFGIH 183 (615)
Q Consensus 123 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 183 (615)
|..-+..|- .|++-+|.++|+..-...-.+ ....|..||. .. .+.|+...|..++.....
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333344443 488888888888887765455 4455666666 22 245777777777776654
No 340
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.80 E-value=3e+02 Score=22.78 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=33.8
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccc
Q 036661 329 AMISGYA---QKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG 373 (615)
Q Consensus 329 ~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 373 (615)
.+|+++. +..+.+.|+-.+.+|++.|-.|....-..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455554 46789999999999999998887777777777765555
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.37 E-value=3.9e+02 Score=25.73 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=34.4
Q ss_pred cCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 036661 388 GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR 460 (615)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 460 (615)
.|++-....|..-.+.+...|++++|.++--..+. +++.|.+.+-.+-...|+..-.+.+|..+.+.| +.|.
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~ 429 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNK 429 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccch
Confidence 34444444444445556666666666666554433 333333333322223344444555555555554 3443
No 342
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.26 E-value=64 Score=24.95 Aligned_cols=44 Identities=14% Similarity=-0.051 Sum_probs=21.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 036661 25 QIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLS 68 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 68 (615)
+++.+...+..-.|.++++.+.+.++..+..|-...|..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44444444445555555555555444444444444444444433
No 343
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.21 E-value=2.7e+02 Score=22.17 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=37.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCC---CCC--ChhhHHHHHH-H-----HHHhCChhHHHHHHHHHhc
Q 036661 502 MADLLGRKGKLKEALDFVQSMP---IKS--DAGIWGTLLC-A-----CKIHRNIEIGEYVAYRLFE 556 (615)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~-~-----~~~~~~~~~A~~~~~~~~~ 556 (615)
-+..+ ..|++-+|.++++..= ..+ +...|..+++ . ..+.||...|..++++++.
T Consensus 39 ~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344 4489999988888752 233 3456666666 2 2457999999999999976
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.06 E-value=4.4e+02 Score=28.41 Aligned_cols=47 Identities=6% Similarity=-0.021 Sum_probs=33.3
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHHHhcC
Q 036661 462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCMADLLGRKG 510 (615)
Q Consensus 462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g 510 (615)
-|..++..+.+.+.++.+.++-+.+.+.. .++ ...|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~--~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASK--ETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc--ccCCccchHHHHHHHHHHHhhCC
Confidence 56778888888999999988888887532 222 236777777766554
No 345
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.89 E-value=83 Score=22.44 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=25.7
Q ss_pred CChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHH
Q 036661 408 GSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEA 444 (615)
Q Consensus 408 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 444 (615)
...+.|.++++.++..++.+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777777777777777665655444
No 346
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.72 E-value=2.9e+02 Score=22.23 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=68.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChH---HHHHHHHHhhcC
Q 036661 26 IREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIF---VQTTMVDMYAKC 102 (615)
Q Consensus 26 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 102 (615)
+...+..|+.+....++..-...--..+.... +.+...+..|+.+-+..++ +.|..++.. -.+ .+...+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t-~l~~A~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALI----DRGADINLQNSISDS-PYLYAGAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCC-HHHHHHHc
Confidence 34445667777776666532210001122222 3344445567765444444 444433321 122 23344566
Q ss_pred CChhHHHHhhccCC-C---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcC-CcCC---hhHHHHHHHHHHhcCChhHH
Q 036661 103 DRLDCAYKLFDKMP-D---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVG-IQAD---FVTVMGLTQAAIHAKHLSLL 174 (615)
Q Consensus 103 g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~---~~~~~~ll~~~~~~~~~~~a 174 (615)
|+.+-+..+++.-. . ++..-.+. +...++.|+.+-+ +.+.+.| ..++ ..-.+.+..++........-
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNV----KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHH----HHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHH----HHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence 77777777774322 1 22222222 2334455665433 3333344 2222 22223333333322223334
Q ss_pred HHHHHHHHHhcCCCcc
Q 036661 175 KSVHSFGIHIGVDADV 190 (615)
Q Consensus 175 ~~~~~~~~~~~~~~~~ 190 (615)
.++.+.+++.|..++.
T Consensus 158 ~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 158 QDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHCCCCCCc
Confidence 5666666777766553
No 347
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.72 E-value=3.2e+02 Score=22.83 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=43.9
Q ss_pred cHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccch-----hhHHHHHHHHHHhcCC
Q 036661 326 SWTAMISGYA---QKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGA-----LELGKWFDNYACSGGL 390 (615)
Q Consensus 326 ~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 390 (615)
.+-.+|+++. +..+.+.|+-.+.+|++.|-.|....-..++.+....|. ...|...++.....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3444566654 468899999999999999988888777777777665553 2334444444444453
No 348
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.62 E-value=1.6e+02 Score=22.91 Aligned_cols=35 Identities=3% Similarity=-0.114 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCC
Q 036661 171 LSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCND 205 (615)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (615)
.-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 44555555555554444444443344444544443
No 349
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.13 E-value=1.2e+02 Score=24.22 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=43.0
Q ss_pred HHHHHHHH-HhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCccchHHHHHHHHHccCCH
Q 036661 137 EKVLCLFY-NMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI--GVDADVSVCNTWISAYAKCNDL 206 (615)
Q Consensus 137 ~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 206 (615)
+.+++-+. .+++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 33443333 3456677775544 34556666666777888888888877 6566665555556677777654
No 350
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.91 E-value=3e+02 Score=22.21 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHhC
Q 036661 499 YSCMADLLGRKG-KLKEALDFVQSM 522 (615)
Q Consensus 499 ~~~l~~~~~~~g-~~~~A~~~~~~~ 522 (615)
...++..+.+.| .++.+..+++.+
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 334445555555 334444444443
No 351
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.81 E-value=1.6e+02 Score=23.36 Aligned_cols=71 Identities=7% Similarity=0.083 Sum_probs=50.7
Q ss_pred hhHHHHHHHH-HHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhc--CCCCChHHHHHHHHHhhcCCChh
Q 036661 35 AHKALLLFRR-MKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKS--PFWSDIFVQTTMVDMYAKCDRLD 106 (615)
Q Consensus 35 ~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 106 (615)
...+++-++. +++.|.++ +..-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~-T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKY-TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455554444 55678875 445677888888888888999999999887 65667666656677788777543
No 352
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.42 E-value=4.9e+02 Score=24.43 Aligned_cols=173 Identities=13% Similarity=0.059 Sum_probs=83.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCC---hHHHHHHHHHh
Q 036661 25 QIREAVDKNEAHKALLLFRRMKKNDIEPNNL--TFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSD---IFVQTTMVDMY 99 (615)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 99 (615)
.+...+..|+.+-+..++ +.|..|+.. ...+.+...+..|+.+-+..+++. |..++ ..-. ..+...
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~-t~L~~A 87 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQ-TPLHCA 87 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSC-CHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCC-CHHHHH
Confidence 455566677766554444 445555433 223455555667777666555543 32222 1112 234444
Q ss_pred hcCCChhHHHHhhccCCCCC---chhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhH--HHHHHHHHHhcCChhHH
Q 036661 100 AKCDRLDCAYKLFDKMPDRD---VASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVT--VMGLTQAAIHAKHLSLL 174 (615)
Q Consensus 100 ~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a 174 (615)
++.|+.+-+.-+++.-..++ ...++. +...++.|+.+-+..+++ .+..++... -...+...+..|+.+-+
T Consensus 88 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 88 ARIGHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRVA 162 (437)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence 56678777777776544332 222223 333445666655444443 332222111 11233344455665543
Q ss_pred HHHHHHHHHhcCCCccc--hHHHHHHHHHccCCHHHHHHHHHh
Q 036661 175 KSVHSFGIHIGVDADVS--VCNTWISAYAKCNDLKMAELVFRG 215 (615)
Q Consensus 175 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~ 215 (615)
+.+++.|..++.. .-.+.+...+..|+.+-...+++.
T Consensus 163 ----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 201 (437)
T 1n11_A 163 ----ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201 (437)
T ss_dssp ----HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG
T ss_pred ----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 4444555544432 122344555666777655555543
No 353
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.40 E-value=3.3e+02 Score=22.53 Aligned_cols=22 Identities=5% Similarity=-0.102 Sum_probs=12.3
Q ss_pred HhcCCChhhHHHHHHHHHHCCC
Q 036661 233 CTYGDKFDDSLNFYRHMIYDGF 254 (615)
Q Consensus 233 ~~~~~~~~~a~~~~~~m~~~~~ 254 (615)
.+..|+.+-+..+++.+.+.|.
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhcCC
Confidence 3445565555555566666554
No 354
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.24 E-value=78 Score=22.57 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHH
Q 036661 75 MIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKV 139 (615)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 139 (615)
.+++.+...|+ .+......+ .........++|.++++.++.+...+|..++.++...|+..-|
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I-~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDI-QRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHH-HTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHH-HhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 45666666653 233222221 1110114678888888888888888888888888766665544
No 355
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.58 E-value=4.6e+02 Score=23.87 Aligned_cols=78 Identities=8% Similarity=-0.129 Sum_probs=54.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCc-hHHH--HHHHHHH----HhcCChHHHHHHHh
Q 036661 346 LFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN-VMVC--NALIDMY----SKCGSIGDARELFY 418 (615)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~l~~~~----~~~g~~~~A~~~~~ 418 (615)
+++.+.+.|+.|...++..++..+.+.=..+.+..+++.+...|.... ...+ .+++..+ ....++++...+++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~ 310 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ 310 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 445566678888888888888888888788999999999988775433 2222 2222221 23567788888888
Q ss_pred cCCCC
Q 036661 419 ALPEK 423 (615)
Q Consensus 419 ~~~~~ 423 (615)
.++..
T Consensus 311 ~~p~~ 315 (345)
T 2qfz_A 311 NLPTA 315 (345)
T ss_dssp SCSCT
T ss_pred cCCCc
Confidence 77664
No 356
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.58 E-value=88 Score=23.99 Aligned_cols=50 Identities=4% Similarity=-0.081 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCch
Q 036661 22 WNSQIREAVDKN-EAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFL 71 (615)
Q Consensus 22 ~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 71 (615)
-..+++.+...+ ....|.++++.+.+.++..+..|-...|..+...|-..
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 456788888777 78899999999999888778777777777777766543
No 357
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=21.32 E-value=7.7e+02 Score=26.30 Aligned_cols=92 Identities=10% Similarity=-0.028 Sum_probs=57.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-----ChhhHHHHHHHHHHh-------CChhHHHHHHHHHhccCCCC
Q 036661 494 PELNHYSCMADLLGRKGKLKEALDFVQSMPIKS-----DAGIWGTLLCACKIH-------RNIEIGEYVAYRLFELEPHS 561 (615)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-----~~~~~~~l~~~~~~~-------~~~~~A~~~~~~~~~~~p~~ 561 (615)
-+.-++......-+..... .+++..+++...| ++.-.++++.++... .+...=.=+.+.++++++-|
T Consensus 762 ~~~lv~~kwf~~qa~~~~~-~~~~~v~~l~~h~~f~~~npn~~r~l~~~f~~~n~~~fh~~~g~gy~~~~~~~~~l~~~n 840 (891)
T 3b34_A 762 QNGLVMDKWFILQATSPAA-NVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRN 840 (891)
T ss_dssp TCHHHHHHHHHHHHTCCCT-THHHHHHHHTTCTTCCTTCHHHHHHHHHHHHHHCHHHHTCTTSHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHhCCCCc-cHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhccCccccCCCCCcHHHHHHHHHHHhcCcC
Confidence 4555555544444444443 3555554443222 444567777776541 12223334556778999999
Q ss_pred CCChHhHHHHHHccCChHHHHHHHH
Q 036661 562 AAPYVEMANIYALGGRWDGVANLRT 586 (615)
Q Consensus 562 ~~~~~~l~~~~~~~g~~~~A~~~~~ 586 (615)
|.+-..++..+.+-.++++.++..-
T Consensus 841 p~~a~r~~~~~~~~~~~~~~~~~~~ 865 (891)
T 3b34_A 841 PQVASRLIEPLIRLKRYDAKRQEKM 865 (891)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCHHHHHHH
Confidence 9999999999999999988877543
No 358
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.13 E-value=34 Score=25.58 Aligned_cols=70 Identities=6% Similarity=-0.171 Sum_probs=40.8
Q ss_pred hhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHH
Q 036661 99 YAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKS 176 (615)
Q Consensus 99 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 176 (615)
|.++++|.++..+.++ -..|.-.|...+..++.+-|.++++-..+.| +...|.+.+-.|...=+++-+.+
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 4455566655544433 1234445556666777777777777776655 55666666666666555554443
No 359
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.55 E-value=91 Score=19.81 Aligned_cols=29 Identities=7% Similarity=-0.128 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHcCCcCChhHHHHHHHHH
Q 036661 137 EKVLCLFYNMRLVGIQADFVTVMGLTQAA 165 (615)
Q Consensus 137 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 165 (615)
++|.+.|.+|.+..-.+...||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56777777776655455556676666666
No 360
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.24 E-value=2.3e+02 Score=25.89 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh
Q 036661 124 NAMIVGFAQMGFLEKVLCLFYNM 146 (615)
Q Consensus 124 ~~li~~~~~~g~~~~a~~~~~~m 146 (615)
..++.-|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34455555555555555555554
Done!