BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036662
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKP 61
+ L+ AA G V ++L L+K+ +A M TPLHVAA A+ +L
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEA---SQACMTKKGFTPLHVAAKYGKVRVAELLL---- 166
Query: 62 GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVK 121
E D+ ++A +V + N +D+++ L+ R + +P T LH+ K
Sbjct: 167 ----ERDAHPNAAGKNGLTPLHVAVHHNNLDIVK-LLLPRGGSPHSPAWNGYTPLHIAAK 221
Query: 122 HNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANG 174
NQ+E + LL+ + NA+ G++ LHLA + E ANG
Sbjct: 222 QNQVEVARSLLQYGGSA---NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 45/233 (19%)
Query: 14 VTSLLEFLQKDRLILERAAM----NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDS 69
V S + L + +L+R A N ETPLH+AA H + AK +L+ K + +
Sbjct: 20 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 79
Query: 70 RKSSALHIASQKRYVGM-----KSNRIDVLEELVRARPLAASAPLIWVETI--------- 115
++ LH A++ + M ++N L PL +A VET+
Sbjct: 80 DQTP-LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 138
Query: 116 -----------LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYY 164
LH+ K+ ++ ++LLE NA G++ LH+AV ++
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLER---DAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 165 -------NQSECCYANGFTAWDILANSKRKMKDWEIG-ELLRRAGAISAKEMQ 209
NG+T I A K E+ LL+ G+ +A+ +Q
Sbjct: 196 KLLLPRGGSPHSPAWNGYTPLHIAA----KQNQVEVARSLLQYGGSANAESVQ 244
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 46/194 (23%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
+E+ L+ AA AG T + ++L +++ + A + +TPLH AA + H + K +L
Sbjct: 47 VETPLHMAARAGH-TEVAKYLLQNKAKVNAKAKD--DQTPLHCAARIGHTNMVKLLLENN 103
Query: 61 --PGIAGELDSRKSSALHIASQKRYV--------------------------GMKSNRID 92
P +A + + LHIA+++ +V K ++
Sbjct: 104 ANPNLA---TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 93 VLEELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLE--NTDDSEFLNAKDDYG 148
V E L+ A P AA + T LH+ V HN L+ +K+LL + S N G
Sbjct: 161 VAELLLERDAHPNAAGKNGL---TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-----G 212
Query: 149 MSILHLAVADKQIE 162
+ LH+A Q+E
Sbjct: 213 YTPLHIAAKQNQVE 226
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 27/168 (16%)
Query: 39 TPLHVAALLRHKDFAKEILRQ--KPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEE 96
TPLHVA+ + H K +L++ P ++ + + + LH+A+ ++ +V +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAA-------RAGHTEVAKY 65
Query: 97 LVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
L++ + +A +T LH + +K+LLEN + N G + LH+A
Sbjct: 66 LLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP---NLATTAGHTPLHIAA 121
Query: 157 ADKQIEYY-------NQSECCYANGFTAWDILANSKRKMKDWEIGELL 197
+ +E C GFT + A K + ELL
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAA----KYGKVRVAELL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 37 SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEE 96
TPLH+AA H + K +L + + D + LH+A+ ++ ++V++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAA-------RNGHLEVVKL 53
Query: 97 LVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
L+ A +A T LHL ++ LE +K+LLE D +NAKD G + LHLA
Sbjct: 54 LLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA 109
Query: 157 ADKQIE 162
+ +E
Sbjct: 110 RNGHLE 115
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 37 SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEE 96
TPLH+AA H + K +L + + D + LH+A+ ++ ++V++
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAA-------RNGHLEVVKL 86
Query: 97 LVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLE 133
L+ A +A T LHL ++ LE +K+LLE
Sbjct: 87 LLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 27/159 (16%)
Query: 4 KLYEAALAGSVTSLLEFLQKD--RLILERAA----MNCPSETPLHVAALLRHKDFAKEIL 57
KL EAA AG Q D R+++ A + TPLH+AA H + + +L
Sbjct: 17 KLLEAARAG---------QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL 67
Query: 58 RQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH 117
+ + +D S+ LH+A+ +G ++++E L++ +A W +T LH
Sbjct: 68 KHGADV-NAIDIMGSTPLHLAA---LIG----HLEIVEVLLK-HGADVNAVDTWGDTPLH 118
Query: 118 LCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
L LE ++VLL++ D +NA+D +G + +++
Sbjct: 119 LAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKD--RLILERAA----MNCPSETPLHVAALLRHKDFAK 54
+ KL EAA AG Q D R+++ A + TPLH+AA H + +
Sbjct: 14 LGKKLLEAARAG---------QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE 64
Query: 55 EILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVET 114
+L+ + +D S+ LH+A+ +G ++++E L++ +A W +T
Sbjct: 65 VLLKHGADV-NAIDIXGSTPLHLAA---LIG----HLEIVEVLLK-HGADVNAVDTWGDT 115
Query: 115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
LHL LE ++VLL++ D +NA+D +G + +++
Sbjct: 116 PLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 14/119 (11%)
Query: 39 TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
TPLH+AA H + + +L+ + + DS + LH+A+++ + ++++E L+
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGH-------LEIVEVLL 100
Query: 99 R-ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
+ + AS + T LHL K LE ++VLL+N D +NA+D +G + +++
Sbjct: 101 KNGADVNASDSHGF--TPLHLAAKRGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYY-----NQSE 168
T LHL LE ++VLL+N D +NAKD G++ LHLA +E N ++
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGAD---VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 169 CCYAN--GFTAWDILANSKRKMKDWEIGELLRRAGA-ISAKE-MQQPATKVSITQTN 221
++ GFT + A K EI E+L + GA ++A++ + A +SI N
Sbjct: 106 VNASDSHGFTPLHLAA----KRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 27/159 (16%)
Query: 4 KLYEAALAGSVTSLLEFLQKD--RLILERAA----MNCPSETPLHVAALLRHKDFAKEIL 57
KL EAA AG Q D R+++ A + +TPLH+AA + H + + +L
Sbjct: 17 KLLEAARAG---------QDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL 67
Query: 58 RQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH 117
+ + LD S+ LH+A+++ + ++++E L++ + I T LH
Sbjct: 68 KNGADV-NALDFSGSTPLHLAAKRGH-------LEIVEVLLKYGADVNADDTIG-STPLH 118
Query: 118 LCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
L LE ++VLL+ D +NA+D +G + +++
Sbjct: 119 LAADTGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 111 WVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECC 170
+ +T LHL + LE ++VLL+N D +NA D G + LHLA +E +
Sbjct: 46 YGDTPLHLAARVGHLEIVEVLLKNGAD---VNALDFSGSTPLHLAAKRGHLEIV-EVLLK 101
Query: 171 YANGFTAWDILANSKRKM----KDWEIGELLRRAGA-ISAKE-MQQPATKVSITQTN 221
Y A D + ++ + EI E+L + GA ++A++ + A +SI N
Sbjct: 102 YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
T LHL + QLE ++VLL+N D +NA D G++ LHLA D +E
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGAD---VNASDSAGITPLHLAAYDGHLE 86
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKD--RLILERAA-MNCPSE---TPLHVAALLRHKDFAK 54
+ KL EAA AG Q D R+++ A +N + TPLH+AA + +
Sbjct: 6 LGKKLLEAAAAG---------QDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVE 56
Query: 55 EILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR-ARPLAASAPLIWVE 113
+L+ + DS + LH+A+ Y G ++++E L++ + A W
Sbjct: 57 VLLKNGADVNAS-DSAGITPLHLAA---YDG----HLEIVEVLLKHGADVNAYDRAGW-- 106
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ 160
T LHL QLE ++VLL++ D +NA+D G++ +++ Q
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGAD---VNAQDALGLTAFDISINQGQ 150
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE-------YYNQ 166
T LHL LE ++VLL++ D +NA D G + LHLA Q+E +
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Query: 167 SECCYANGFTAWDILANSKRK 187
A G TA+DI N ++
Sbjct: 131 VNAQDALGLTAFDISINQGQE 151
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 123 NQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANG 174
Q + +++L+ N D +NA DD G++ LHLA A+ Q+E E NG
Sbjct: 17 GQDDEVRILMANGAD---VNATDDNGLTPLHLAAANGQLEIV---EVLLKNG 62
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Query: 105 ASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYY 164
AS + W T LHL LE ++VLL+N D +NA D G++ LHLA +E
Sbjct: 42 ASDHVGW--TPLHLAAYFGHLEIVEVLLKNGAD---VNADDSLGVTPLHLAADRGHLEVV 96
Query: 165 -----NQSECCYA--NGFTAWDILANSKRKMKDWEIGELLRRAGA-ISAKE-MQQPATKV 215
N ++ NGFT + AN + EI E+L + GA ++A++ + A +
Sbjct: 97 EVLLKNGADVNANDHNGFTPLHLAAN----IGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 216 SITQTN 221
SI N
Sbjct: 153 SIDNGN 158
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 27/162 (16%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKD--RLILERAAMNCPSE----TPLHVAALLRHKDFAK 54
+ KL EAA AG Q D R+++ A S+ TPLH+AA H + +
Sbjct: 14 LGKKLLEAARAG---------QDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVE 64
Query: 55 EILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVET 114
+L+ + + DS + LH+A+ + + ++V+E L++ +A T
Sbjct: 65 VLLKNGADVNAD-DSLGVTPLHLAADRGH-------LEVVEVLLK-NGADVNANDHNGFT 115
Query: 115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
LHL LE ++VLL++ D +NA+D +G + +++
Sbjct: 116 PLHLAANIGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA-------VADKQIEYYNQ 166
T LHL LE ++VLL+N D +NAKDD G++ LHLA + + ++Y
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Query: 167 SECCYANGFTAWDILANSKRKMKDWEIGELLRR 199
G TA+DI N+ + ++ E+L++
Sbjct: 139 VNAQDKFGKTAFDISINNGNE----DLAEILQK 167
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYY-----NQSE 168
T LHL LE ++VLL+N D +NA D G + LHLA +E N ++
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGAD---VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 169 CCYA--NGFTAWDILANSKRKMKDWEIGELLRRAGA-ISAKE-MQQPATKVSITQTN 221
NG T + AN EI E+L + GA ++A++ + A +SI N
Sbjct: 106 VNAKDDNGITPLHLAANRGH----LEIVEVLLKYGADVNAQDKFGKTAFDISINNGN 158
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 68 DSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEA 127
D + LH+A+ K + ++++E L++ +A + +T LHL + LE
Sbjct: 44 DDSGKTPLHLAAIKGH-------LEIVEVLLKHGADVNAADKMG-DTPLHLAALYGHLEI 95
Query: 128 LKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE-------YYNQSECCYANGFTAWDI 180
++VLL+N D +NA D YG + LHLA +E Y G TA+DI
Sbjct: 96 VEVLLKNGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 23/160 (14%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKDRLILERAA-MNCPSE---TPLHVAALLRHKDFAKEI 56
+ KL EAA AG + R+++ A +N + TPLH+AA+ H + + +
Sbjct: 14 LGKKLLEAARAGQDDEV-------RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVL 66
Query: 57 LRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETIL 116
L+ + D + LH+A+ + ++++E L++ +A + T L
Sbjct: 67 LKHGADVNAA-DKMGDTPLHLAALYGH-------LEIVEVLLK-NGADVNATDTYGFTPL 117
Query: 117 HLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
HL LE ++VLL+ D +NA+D +G + +++
Sbjct: 118 HLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
T LHL ++ LE +K+LLE D +NAKD G + LHLA + +E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLE 49
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
T LHL ++ LE +K+LLE D +NAKD G + LHLA + +E
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLE 82
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 39 TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
TPLH+AA H + K +L + + D + LH+A+ ++ ++V++ L+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAA-------RNGHLEVVKLLL 55
Query: 99 RARPLAASAPLIWVETILHLCVKHNQLEALKVLLE 133
A +A T LHL ++ LE +K+LLE
Sbjct: 56 EAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 23/160 (14%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKDRLILERAA-MNCPSE---TPLHVAALLRHKDFAKEI 56
+ KL EAA AG + R+++ A +N + TPLH+AA + H + + +
Sbjct: 14 LGKKLLEAARAGQDDEV-------RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVL 66
Query: 57 LRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETIL 116
L+ + D+ + LH+A+ + ++++E L++ +A + T L
Sbjct: 67 LKHGADVNAR-DTDGWTPLHLAADNGH-------LEIVEVLLKYGA-DVNAQDAYGLTPL 117
Query: 117 HLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
HL LE ++VLL++ D +NA+D +G + +++
Sbjct: 118 HLAADRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 68 DSRKSSALHIASQKRYVGMKSNRIDVLEELVR-ARPLAASAPLIWVETILHLCVKHNQLE 126
D + S+ LH+A+ ++G +++E L++ + A W T LHL + LE
Sbjct: 44 DDQGSTPLHLAA---WIGHP----EIVEVLLKHGADVNARDTDGW--TPLHLAADNGHLE 94
Query: 127 ALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
++VLL+ D +NA+D YG++ LHLA +E
Sbjct: 95 IVEVLLKYGAD---VNAQDAYGLTPLHLAADRGHLE 127
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEY------YNQS 167
T LHL + LE ++VLL+N D +NA D G++ LHLA A +E +
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGAD---VNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Query: 168 ECCYAN-GFTAWDILANSKRKMKDWEIGELLRRAGA-ISAKE-MQQPATKVSITQTN 221
Y N G T + A K EI E+L + GA ++A++ + A +SI N
Sbjct: 106 VNAYDNDGHTPLHLAA----KYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 27/162 (16%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKD--RLILERAA----MNCPSETPLHVAALLRHKDFAK 54
+ KL EAA AG Q D R+++ A + TPLH+AA H + +
Sbjct: 14 LGKKLLEAARAG---------QDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVE 64
Query: 55 EILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVET 114
+L+ + D + LH+A+ + ++++E L++ +A T
Sbjct: 65 VLLKNGADVNAS-DLTGITPLHLAA-------ATGHLEIVEVLLK-HGADVNAYDNDGHT 115
Query: 115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
LHL K+ LE ++VLL++ D +NA+D +G + +++
Sbjct: 116 PLHLAAKYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 39/168 (23%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKDR---LILERAAMNCPSET---PLHVAALLRHKDFAK 54
+ KL EAA AG Q D LI A +N T PLH+AA+ H + +
Sbjct: 14 LGKKLLEAARAG---------QDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVE 64
Query: 55 EILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL------VRARPLAASAP 108
+L+ + D + LH+A+ + ++++E L V A + S P
Sbjct: 65 VLLKHGADVDAA-DVYGFTPLHLAAM-------TGHLEIVEVLLKYGADVNAFDMTGSTP 116
Query: 109 LIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
LHL LE ++VLL+ D +NA+D +G + +++
Sbjct: 117 -------LHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYAN 173
T LHL LE ++VLL++ D ++A D YG + LHLA +E + Y
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGAD---VDAADVYGFTPLHLAAMTGHLEIV-EVLLKYGA 104
Query: 174 GFTAWDILANSKRKM----KDWEIGELLRRAGA-ISAKE-MQQPATKVSITQTN 221
A+D+ ++ + EI E+L + GA ++A++ + A +SI N
Sbjct: 105 DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
Query: 39 TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
+PLHVAAL D +L+ AG ++ ++ LH+A Q+ + + +D
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDS----- 141
Query: 99 RARP----LAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHL 154
A+P L+ + PLI+ + H++L AL LL++ +NA ++ G + LH
Sbjct: 142 NAKPNKKDLSGNTPLIYACS-----GGHHELVAL--LLQH---GASINASNNKGNTALHE 191
Query: 155 AVADKQI 161
AV +K +
Sbjct: 192 AVIEKHV 198
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKDRLILERAA-MNCPSE---TPLHVAALLRHKDFAKEI 56
+ KL EAA AG + R+++ A +N + TPLH+AA H + + +
Sbjct: 2 LGKKLLEAARAGQDDEV-------RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
Query: 57 LRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETIL 116
L+ + + D + LH+A+++ + ++++E L++A +A T L
Sbjct: 55 LKAGADVNAK-DKDGYTPLHLAAREGH-------LEIVEVLLKAGA-DVNAKDKDGYTPL 105
Query: 117 HLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
HL + LE ++VLL+ D +NA+D +G + LA+
Sbjct: 106 HLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------Q 166
T LHL + LE ++VLL+ D +NAKD G + LHLA + +E
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 167 SECCYANGFTAWDILANSKRKMKDWEIGELLRRAGA 202
+G+T + A EI E+L +AGA
Sbjct: 94 VNAKDKDGYTPLHLAAREGH----LEIVEVLLKAGA 125
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 31/164 (18%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKD--RLILERAA----MNCPSETPLHVAALLRHKDFAK 54
+ KL EAA AG Q D R+++ A + TPLH+AA + H + +
Sbjct: 2 LGKKLLEAARAG---------QDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVE 52
Query: 55 EILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWV 112
+LR + +D+ ++ LH+A+ + ++++E L++ A A A I
Sbjct: 53 VLLRNGADV-NAVDTNGTTPLHLAASLGH-------LEIVEVLLKYGADVNAKDATGI-- 102
Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
T L+L LE ++VLL++ D +NA+D +G + +++
Sbjct: 103 -TPLYLAAYWGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 142
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------Q 166
T LHL + LE ++VLL+ D +NAKD G + LHLA + +E
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
Query: 167 SECCYANGFTAWDILANSKRKMKDWEIGELLRRAGA-ISAKE-MQQPATKVSITQTN 221
+G+T + A EI E+L +AGA ++A++ + A +SI N
Sbjct: 106 VNAKDKDGYTPLHLAAREGH----LEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 158
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKDRLILERAA-MNCPSE---TPLHVAALLRHKDFAKEI 56
+ KL EAA AG + R+++ A +N + TPLH+AA H + + +
Sbjct: 14 LGKKLLEAARAGQDDEV-------RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 66
Query: 57 LRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETIL 116
L+ + + D + LH+A+++ + ++++E L++A +A T L
Sbjct: 67 LKAGADVNAK-DKDGYTPLHLAAREGH-------LEIVEVLLKAGA-DVNAKDKDGYTPL 117
Query: 117 HLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
HL + LE ++VLL+ D +NA+D +G + +++
Sbjct: 118 HLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTAFDISI 154
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKDRLILERAA-MNCPSE---TPLHVAALLRHKDFAKEI 56
+ KL EAA AG + R+++ A +N + TPLH+AA H + + +
Sbjct: 2 LGKKLLEAARAGQDDEV-------RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
Query: 57 LRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETIL 116
L+ + + D + LH+A+++ + ++++E L++A +A T L
Sbjct: 55 LKAGADVNAK-DKDGYTPLHLAAREGH-------LEIVEVLLKAGA-DVNAKDKDGYTPL 105
Query: 117 HLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
HL + LE ++VLL+ D +NA+D +G + LA+
Sbjct: 106 HLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------Q 166
T LHL + LE ++VLL+ D +NAKD G + LHLA + +E
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 167 SECCYANGFTAWDILANSKRKMKDWEIGELLRRAGA 202
+G+T + A EI E+L +AGA
Sbjct: 94 VNAKDKDGYTPLHLAAREGH----LEIVEVLLKAGA 125
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA-------VADKQIEYYNQ 166
T LHL K LE ++VLL++ D +NA+D +G + LHLA + + +EY
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 167 SECCYANGFTAWDI 180
G TA+DI
Sbjct: 106 VNAQDKFGKTAFDI 119
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 67 LDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLE 126
+D + LH+A+++ + ++++E L++ +A IW T LHL LE
Sbjct: 43 MDDAGVTPLHLAAKRGH-------LEIVEVLLK-HGADVNARDIWGRTPLHLAATVGHLE 94
Query: 127 ALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
++VLLE D +NA+D +G + +++
Sbjct: 95 IVEVLLEYGAD---VNAQDKFGKTAFDISI 121
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA-------VADKQIEYYNQ 166
T LHL K LE ++VLL++ D +NA D +G + LHLA + + +EY
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD---VNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 167 SECCYANGFTAWDI 180
G TA+DI
Sbjct: 106 VNAQDKFGKTAFDI 119
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 67 LDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLE 126
+D + LH+A+++ + ++++E L++ +A W T LHL LE
Sbjct: 43 MDDAGVTPLHLAAKRGH-------LEIVEVLLK-HGADVNASDSWGRTPLHLAATVGHLE 94
Query: 127 ALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
++VLLE D +NA+D +G + +++
Sbjct: 95 IVEVLLEYGAD---VNAQDKFGKTAFDISI 121
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
T LHL + LE ++VLL++ D +NAKD G + LHLA D +E
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLE 127
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
T LHL K LE ++VLL+ D +NA D+YG + LHLA + +E
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLE 94
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 35/166 (21%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKDRLILERAA-MNCP---SETPLHVAALLRHKDFAKEI 56
+ KL EAA AG + R+++ A +N TPLH+AA H + + +
Sbjct: 14 LGKKLLEAARAGQDDEV-------RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVL 66
Query: 57 LRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL------VRARPLAASAPLI 110
L+ + D+ ++ LH+A+ + ++++E L V A+ P
Sbjct: 67 LKYGADV-NAWDNYGATPLHLAAD-------NGHLEIVEVLLKHGADVNAKDYEGFTP-- 116
Query: 111 WVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
LHL LE ++VLL+ D +NA+D +G + +++
Sbjct: 117 -----LHLAAYDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 27/158 (17%)
Query: 4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGI 63
+L EAA G+ + + L+ + A + +TPLH+AA HK+ K +L Q
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADV---NASDSDGKTPLHLAAENGHKEVVKLLLSQGADP 63
Query: 64 AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR------ARPLAASAPLIWVETILH 117
+ DS + LH+A++ + +E+V+ A P A + +T LH
Sbjct: 64 NAK-DSDGKTPLHLAAENGH-----------KEVVKLLLSQGADPNAKDSD---GKTPLH 108
Query: 118 LCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
L ++ E +K+LL D N D G + L LA
Sbjct: 109 LAAENGHKEVVKLLLSQGADP---NTSDSDGRTPLDLA 143
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 67 LDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLE 126
+D + LH+A+++ + ++++E L++ +A IW T LHL LE
Sbjct: 43 MDDAGVTPLHLAAKRGH-------LEIVEVLLK-HGADVNASDIWGRTPLHLAATVGHLE 94
Query: 127 ALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
++VLLE D +NA+D +G + +++
Sbjct: 95 IVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA-------VADKQIEYYNQ 166
T LHL K LE ++VLL++ D +NA D +G + LHLA + + +EY
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD---VNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 167 SECCYANGFTAWDI 180
G TA+DI
Sbjct: 106 VNAQDKFGKTAFDI 119
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 119 CVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANG--FT 176
+ Q + +++L+ N D +NAKD+YG++ L+LA A +E E NG
Sbjct: 21 AARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIV---EVLLKNGADVN 74
Query: 177 AWDILANSKRKMKDW----EIGELLRRAGA-ISAKE-MQQPATKVSITQTN 221
A D + + + + EI E+L + GA ++A++ + A +SI N
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 183 NSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHGNNQKKEAGVDPPHSR 242
N + KM+ + EL + A + KE QP +K++ L AGVD P +
Sbjct: 88 NVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVCCL----------AGVDMPGAD 137
Query: 243 WQDASSFELDATTQRYACF-LFCNTTG 268
+Q +LD + +R+ + L C G
Sbjct: 138 YQLTKLLDLDPSVKRFMFYHLGCYAGG 164
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 183 NSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHGNNQKKEAGVDPPHSR 242
N + KM+ + EL + A + KE QP +K++ L AGVD P +
Sbjct: 88 NVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVCCL----------AGVDMPGAD 137
Query: 243 WQDASSFELDATTQRYACF-LFCNTTG 268
+Q +LD + +R+ + L C G
Sbjct: 138 YQLTKLLDLDPSVKRFMFYHLGCYAGG 164
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
+T LHL V H L LL + E+L+ ++D G + LHLA
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
+T LHL V H L LL + E+L+ ++D G + LHLA
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA-------VADKQIEYYNQ 166
T LHL V + LE ++VLL+ D +NA D G + LHLA + + ++Y
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAAD---VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 167 SECCYANGFTAWDILANSKRKMKDWEIGELLRRAGA-ISAKE-MQQPATKVSITQTN 221
G+T + A EI E+L + GA ++A++ + A +SI N
Sbjct: 106 VNAMDYQGYTPLHLAAEDGH----LEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 86 MKSNRIDVLEELVR-ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAK 144
+ + ++++E L++ A + AS W T LHL LE ++VLL+ D +NA
Sbjct: 55 VNNGHLEIIEVLLKYAADVNASDKSGW--TPLHLAAYRGHLEIVEVLLKYGAD---VNAM 109
Query: 145 DDYGMSILHLAVADKQIE 162
D G + LHLA D +E
Sbjct: 110 DYQGYTPLHLAAEDGHLE 127
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV-ADKQ 160
ET LHL ++++ +A K LLE + D+ N +D+ G + LH AV AD Q
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQ 104
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
T LHL + LE ++VLL+ D +NA+D++G++ LHLA +E
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLE 94
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 1 MESKLYEAALAGSVTSLLEFLQKDRLILERAA-MNCPSE---TPLHVAALLRHKDFAKEI 56
+ KL EAA AG + R+++ A +N E TPLH+AA L H + + +
Sbjct: 14 LGKKLLEAARAGQDDEV-------RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL 66
Query: 57 LRQKPGIAGELDSRKSSALHIASQKRYV 84
L+ + E D+ + LH+A+ + ++
Sbjct: 67 LKYGADVNAE-DNFGITPLHLAAIRGHL 93
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV-ADKQ 160
ET LHL ++++ +A K LLE + D+ N +D+ G + LH AV AD Q
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQ 103
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 31/161 (19%)
Query: 4 KLYEAALAGSVTSLLEFLQKD--RLILERAA----MNCPSETPLHVAALLRHKDFAKEIL 57
KL EAA AG Q D R+++ A + TPLH+AA H + + +L
Sbjct: 17 KLLEAARAG---------QDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLL 67
Query: 58 RQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWVETI 115
+ + D + LH+A+ Y G ++++E L++ A A + + T
Sbjct: 68 KHGADVDAS-DVFGYTPLHLAA---YWG----HLEIVEVLLKNGADVNAMDSDGM---TP 116
Query: 116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
LHL K LE ++VLL++ D +NA+D +G + +++
Sbjct: 117 LHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV-ADKQ 160
ET LHL ++++ +A K LLE + D+ N +D+ G + LH AV AD Q
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQ 71
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 39 TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
TPLH+AA H + + +L+ + +D + L +A+ + ++++E L+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGH-------LEIVEVLL 100
Query: 99 RARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
+ +A + T LHL LE ++VLL+N D +NA+D +G + +++
Sbjct: 101 K-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYAN 173
T LHL + LE ++VLL+N D +NA D GM+ L LA +E E N
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGAD---VNAVDHAGMTPLRLAALFGHLEIV---EVLLKN 102
Query: 174 G--FTAWDILANSKRKM----KDWEIGELLRRAGA-ISAKE-MQQPATKVSITQTN 221
G A D+ ++ + EI E+L + GA ++A++ + A +SI N
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 111 WVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
W T LHL LE ++VLL+N D +NA + G + LHLA
Sbjct: 46 WGHTPLHLAAMLGHLEIVEVLLKNGAD---VNATGNTGRTPLHLA 87
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 70 RKSSALHIASQKRYVGMKS----NRIDV-------LEELVRARPLAASAPLIWVETILHL 118
+ +ALHIA ++R + + N DV + + RP + E L L
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRP-----GFYFGELPLSL 154
Query: 119 CVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH--LAVADKQIE 162
NQL +K LL+N+ ++A+D G ++LH + VAD ++
Sbjct: 155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
T LHL ++ LE ++VLL++ D +NA D+ G + LHLA
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGAD---VNAHDNDGSTPLHLA 87
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
T LHL ++ LE +K+LLE D +NA+D +G + +++
Sbjct: 41 TPLHLAARNGHLEVVKLLLEAGAD---VNAQDKFGKTAFDISI 80
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV-ADKQ 160
ET LHL ++++ +A K LLE + D+ +D+ G + LH AV AD Q
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXI---QDNMGRTPLHAAVSADAQ 68
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 33 MNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIA 78
MN +TPLH+AA H+D +++L+ K I ++ + LH A
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYA 107
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGI 63
+L EAA G+ + + ++ + A + TPLH AA HK+ K ++ + +
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 64 AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHN 123
+ DS + LH A+++ G K + +L+ ++ +A T LH K
Sbjct: 64 NAK-DSDGRTPLHYAAKE---GHKE-----IVKLLISKGADVNAKDSDGRTPLHYAAKEG 114
Query: 124 QLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
E +K+L+ D +N D G + L LA
Sbjct: 115 HKEIVKLLISKGAD---VNTSDSDGRTPLDLA 143
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 33 MNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIA 78
MN +TPLH+AA H+D +++L+ K I ++ + LH A
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYA 112
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 6 YEAALAGSVTSLLEFLQKD---RLI--------LERAAMNCPSETPLHVAALLRHKDFAK 54
++AALAG SL+E L ++ R++ + +A M S+T +++ L H A+
Sbjct: 409 HKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDT-MYLGQLTAHSSVAR 467
Query: 55 EILRQKPGIAG 65
+LR PG+A
Sbjct: 468 HLLRDLPGVAA 478
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 6 YEAALAGSVTSLLEFLQKD---RLI--------LERAAMNCPSETPLHVAALLRHKDFAK 54
++AALAG SL+E L ++ R++ + +A M S+T +++ L H A+
Sbjct: 409 HKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDT-MYLGQLTAHSSVAR 467
Query: 55 EILRQKPGIAG 65
+LR PG+A
Sbjct: 468 HLLRDLPGVAA 478
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 38 ETPLHVAALLRHKDFAKEILRQKPGIAGEL-DSRKSSALHIASQK---RYVGM--KSNRI 91
+TPLH+A + + A+ +L G EL D R ++ LH+A ++ VG+ +S
Sbjct: 46 QTPLHLAVITNQPEIAEALL--GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 103
Query: 92 DVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD-YGMS 150
L +++A T LHL H L +++L+ D +NA++ G +
Sbjct: 104 PHLHSILKATNYNG-------HTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRT 153
Query: 151 ILHLAV 156
LHLAV
Sbjct: 154 ALHLAV 159
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 38 ETPLHVAALLRHKDFAKEILRQKPGIAGEL-DSRKSSALHIASQK---RYVGM--KSNRI 91
+TPLH+A + + A+ +L G EL D R ++ LH+A ++ VG+ +S
Sbjct: 43 QTPLHLAVITNQPEIAEALL--GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 100
Query: 92 DVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDY-GMS 150
L +++A T LHL H L +++L+ D +NA++ G +
Sbjct: 101 PHLHSILKATNYNG-------HTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRT 150
Query: 151 ILHLAV 156
LHLAV
Sbjct: 151 ALHLAV 156
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGI 63
+L EAA G+ + + L+ + A + TPLH AA HK+ K +L K
Sbjct: 7 RLIEAAENGNKDRVKDLLENG---ADPNASDSDGRTPLHYAAENGHKEIVK-LLLSKGAD 62
Query: 64 AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHN 123
DS + LH A++ G K + +L+ ++ +A T LH ++
Sbjct: 63 PNAKDSDGRTPLHYAAEN---GHKE-----IVKLLLSKGADPNAKDSDGRTPLHYAAENG 114
Query: 124 QLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
E +K+LL D N D G + L LA
Sbjct: 115 HKEIVKLLLSKGADP---NTSDSDGRTPLDLA 143
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 6 YEAALAGSVTSLLEFLQKDRLILERAAMNCPSE-----TPLHVAALLRHKDFAKEILRQK 60
+E AL +V SL ++ +L R N + TPLHVAA H D E+L +
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM-EVLHKH 269
Query: 61 PGIAGELDSRKSSALHIAS 79
LDS +ALH A+
Sbjct: 270 GAKMNALDSLGQTALHRAA 288
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHL 154
T LHL ++ LE ++VLL+N D +NA D G + LHL
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGAD---VNAIDAIGETPLHL 86
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 73 SALHIASQKRYVG----MKSNRIDV-LEELVRARPLAASAPLIWVETILHLCVKHNQLEA 127
SALHIA +KR + + N DV L R + E L L Q +
Sbjct: 105 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 164
Query: 128 LKVLLENTDDSEFLNAKDDYGMSILH--LAVADKQIE 162
+ LLEN L A D G ++LH + +AD E
Sbjct: 165 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE 201
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 73 SALHIASQKRYVG----MKSNRIDV-LEELVRARPLAASAPLIWVETILHLCVKHNQLEA 127
SALHIA +KR + + N DV L R + E L L Q +
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151
Query: 128 LKVLLENTDDSEFLNAKDDYGMSILH--LAVADKQIE 162
+ LLEN L A D G ++LH + +AD E
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,258,370
Number of Sequences: 62578
Number of extensions: 299513
Number of successful extensions: 865
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 155
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)