BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036665
MATISKLTNPAVSSSSLKPRSSSSSLPKSLISLQTKTGFNSKVASSQLTLRNNHPLKASL
VVKCSQSGGNGSSAKRTTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIF
QKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVE
VSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSL
ARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAA
VAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTV
STMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKS
FDSLLDTLQEKANSLKLVSL

High Scoring Gene Products

Symbol, full name Information P value
TRA2
AT5G13420
protein from Arabidopsis thaliana 2.4e-172
tal
Transaldolase
protein from Mycobacterium tuberculosis 2.6e-70
CJE_0329
transaldolase
protein from Campylobacter jejuni RM1221 3.5e-27
tal
Probable transaldolase
protein from Carboxydothermus hydrogenoformans Z-2901 0.00079
CHY_0129
putative transaldolase
protein from Carboxydothermus hydrogenoformans Z-2901 0.00079

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036665
        (440 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2181665 - symbol:TRA2 "transaldolase 2" specie...  1675  2.4e-172  1
UNIPROTKB|O06812 - symbol:tal "Transaldolase" species:177...   712  2.6e-70   1
TIGR_CMR|CJE_0329 - symbol:CJE_0329 "transaldolase" speci...   305  3.5e-27   1
POMBASE|SPCC1020.06c - symbol:tal1 "transaldolase (predic...   110  0.00018   2
UNIPROTKB|Q3AFT3 - symbol:tal "Probable transaldolase" sp...   110  0.00079   1
TIGR_CMR|CHY_0129 - symbol:CHY_0129 "putative transaldola...   110  0.00079   1


>TAIR|locus:2181665 [details] [associations]
            symbol:TRA2 "transaldolase 2" species:3702 "Arabidopsis
            thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
            [GO:0004801 "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate
            glyceronetransferase activity" evidence=IEA;ISS] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0046686
            "response to cadmium ion" evidence=IEP;RCA] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0006096 "glycolysis" evidence=RCA] [GO:0009060
            "aerobic respiration" evidence=RCA] [GO:0009536 "plastid"
            evidence=IDA] [GO:0009809 "lignin biosynthetic process"
            evidence=IMP] [GO:0033587 "shikimate biosynthetic process"
            evidence=IMP] HAMAP:MF_00493 InterPro:IPR001585 InterPro:IPR004732
            InterPro:IPR013785 InterPro:IPR018225 Pfam:PF00923
            PIRSF:PIRSF036915 PROSITE:PS01054 GO:GO:0005739 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0009570
            Gene3D:3.20.20.70 GO:GO:0006098 GO:GO:0033587 EMBL:AL163572
            GO:GO:0009809 eggNOG:COG0176 PANTHER:PTHR10683 KO:K00616
            GO:GO:0004801 HOGENOM:HOG000226074 TIGRFAMs:TIGR00876 OMA:INKGAIC
            EMBL:AY056296 EMBL:AY114075 EMBL:AY087135 IPI:IPI00531555
            PIR:T48589 RefSeq:NP_196846.1 UniGene:At.22457
            ProteinModelPortal:Q9LYR4 SMR:Q9LYR4 IntAct:Q9LYR4 STRING:Q9LYR4
            PaxDb:Q9LYR4 PRIDE:Q9LYR4 ProMEX:Q9LYR4 EnsemblPlants:AT5G13420.1
            GeneID:831183 KEGG:ath:AT5G13420 TAIR:At5g13420 InParanoid:Q9LYR4
            PhylomeDB:Q9LYR4 ProtClustDB:CLSN2687015 ArrayExpress:Q9LYR4
            Genevestigator:Q9LYR4 Uniprot:Q9LYR4
        Length = 438

 Score = 1675 (594.7 bits), Expect = 2.4e-172, P = 2.4e-172
 Identities = 336/440 (76%), Positives = 363/440 (82%)

Query:     1 MATISKLTN-PAVXXXXXXXXXXXXXXXXXXXXXQTKTGFNSKVASSQLTLRNNHPLKAS 59
             MATIS L N P                       +     N+K++SSQL+LR N     S
Sbjct:     1 MATISNLANLPRATCVDSKSSSSSSVLPRSFVNFRA---LNAKLSSSQLSLRYNQRSIPS 57

Query:    60 LVVKCSQSGGNGSSAKRTTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAI 119
             L V+CS SGGNG++ KRTTLHDLYE+EGQSPWYDNLCRPVTDLLPLIA GVRGVTSNPAI
Sbjct:    58 LSVRCSVSGGNGTAGKRTTLHDLYEKEGQSPWYDNLCRPVTDLLPLIARGVRGVTSNPAI 117

Query:   120 FQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSV 179
             FQKAIS+SNAYNDQFR LV+SGKDIE+AYWELV+KDIQDACKLFE IYD+T G DGYVSV
Sbjct:   118 FQKAISTSNAYNDQFRTLVESGKDIESAYWELVVKDIQDACKLFEPIYDQTEGADGYVSV 177

Query:   180 EVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 239
             EVSPRLADDTQGTVEAAK+L KVVNR NVYIKIPATAPC+PSI++VI+ GISVNVTLIFS
Sbjct:   178 EVSPRLADDTQGTVEAAKYLSKVVNRRNVYIKIPATAPCIPSIRDVIAAGISVNVTLIFS 237

Query:   240 LARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXX 299
             +ARYE VIDAYLDGLEASGL DLSRVTSVASFFVSRVDTL+DKMLE+IGTPEALDLRG  
Sbjct:   238 IARYEAVIDAYLDGLEASGLDDLSRVTSVASFFVSRVDTLMDKMLEQIGTPEALDLRGKA 297

Query:   300 XXXXXXXXXXXXXXXFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDT 359
                            FSGPRW+ALVKKGAKKQRLLWASTSVKNPAY DTLYVAPLIGPDT
Sbjct:   298 AVAQAALAYKLYQQKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYSDTLYVAPLIGPDT 357

Query:   360 VSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKK 419
             VSTMPDQAL+AF DHG V RTID NVSEAEGIYSALEKLGIDWN VG QLE EGVDSFKK
Sbjct:   358 VSTMPDQALEAFADHGIVKRTIDANVSEAEGIYSALEKLGIDWNKVGEQLEDEGVDSFKK 417

Query:   420 SFDSLLDTLQEKANSLKLVS 439
             SF+SLL TLQ+KAN+LKL S
Sbjct:   418 SFESLLGTLQDKANTLKLAS 437


>UNIPROTKB|O06812 [details] [associations]
            symbol:tal "Transaldolase" species:1773 "Mycobacterium
            tuberculosis" [GO:0005576 "extracellular region" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0040007 "growth"
            evidence=IMP] HAMAP:MF_00493 InterPro:IPR001585 InterPro:IPR004732
            InterPro:IPR013785 InterPro:IPR018225 Pfam:PF00923
            PIRSF:PIRSF036915 PROSITE:PS00958 PROSITE:PS01054
            UniPathway:UPA00115 GO:GO:0005829 GO:GO:0040007 GO:GO:0005576
            Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0006098 EMBL:BX842576
            eggNOG:COG0176 PANTHER:PTHR10683 KO:K00616 GO:GO:0004801
            HOGENOM:HOG000226074 TIGRFAMs:TIGR00876 PIR:C70917
            RefSeq:NP_215964.1 RefSeq:NP_335944.1 RefSeq:YP_006514831.1
            ProteinModelPortal:O06812 SMR:O06812 PRIDE:O06812
            EnsemblBacteria:EBMYCT00000001561 EnsemblBacteria:EBMYCT00000070908
            GeneID:13320040 GeneID:886606 GeneID:924475 KEGG:mtc:MT1495
            KEGG:mtu:Rv1448c KEGG:mtv:RVBD_1448c PATRIC:18125052
            TubercuList:Rv1448c OMA:INKGAIC ProtClustDB:PRK03343 Uniprot:O06812
        Length = 373

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 156/347 (44%), Positives = 218/347 (62%)

Query:    87 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGK 142
             G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G 
Sbjct:    15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGA 74

Query:   143 DIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV 202
             D++A    +   D++ AC +    +++++G DG VS+EV PRLA +T+ T++ A  L K+
Sbjct:    75 DVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKI 134

Query:   203 VNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLS-- 260
             V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS+ RY EV+DAYL G+E +  +  
Sbjct:   135 VDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFSVQRYREVMDAYLTGMEKARQAGH 194

Query:   261 DLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFS-GPR 319
              LS++ SVASFFVSRVDT IDK L++IG+ +AL+LRG                 F    R
Sbjct:   195 SLSKIHSVASFFVSRVDTEIDKRLDRIGSRQALELRGQAGVANARLAYATYREVFEDSDR 254

Query:   320 WDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSR 379
             + +L   GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ + A  DHG +  
Sbjct:   255 YRSLKVDGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTIDAVADHGVIQG 314

Query:   380 -TIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLL 425
              T+    S+A+ ++  L  +GID   V   LE EGV  F+ S++ LL
Sbjct:   315 DTVTGTASDAQAVFDQLGAIGIDLTDVFAVLEEEGVRKFEASWNELL 361


>TIGR_CMR|CJE_0329 [details] [associations]
            symbol:CJE_0329 "transaldolase" species:195099
            "Campylobacter jejuni RM1221" [GO:0004801
            "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate
            glyceronetransferase activity" evidence=ISS] [GO:0006098
            "pentose-phosphate shunt" evidence=ISS] HAMAP:MF_00493
            InterPro:IPR001585 InterPro:IPR004732 InterPro:IPR013785
            InterPro:IPR018225 Pfam:PF00923 PROSITE:PS00958 PROSITE:PS01054
            UniPathway:UPA00115 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0006098
            EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG0176
            PANTHER:PTHR10683 KO:K00616 GO:GO:0004801 RefSeq:YP_178349.1
            ProteinModelPortal:Q5HWI6 STRING:Q5HWI6 GeneID:3231091
            KEGG:cjr:CJE0329 PATRIC:20042360 HOGENOM:HOG000226074 OMA:DFKKPLM
            ProtClustDB:PRK03903 BioCyc:CJEJ195099:GJC0-334-MONOMER
            TIGRFAMs:TIGR00876 Uniprot:Q5HWI6
        Length = 325

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 96/293 (32%), Positives = 144/293 (49%)

Query:    89 SPWYDNLCRPVTD--LLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSG-KDIE 145
             S W D +     D   L L++ G+ G TSNPAIF+ AI +S  Y D+  +L +   KDI 
Sbjct:     5 SLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKLKEKKTKDI- 63

Query:   146 AAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNR 205
               Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK L+  + +
Sbjct:    64 --YEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAIGK 119

Query:   206 PNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGL-----EASGLS 260
              N+ IKIPAT      + E++  GISVN TLIFSL + ++  +A   GL         L 
Sbjct:   120 ENIMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKCFEALNAGLVEFRKNNIALK 179

Query:   261 DLSRVT--SVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGP 318
             + +  T  +V S FVSR D L++        P+A +                        
Sbjct:   180 EQNTRTPQAVISIFVSRFDRLLN--------PKAKEQNRIGILNANLA------------ 219

Query:   319 RWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAF 371
              ++ +  K     R L+AST VK    P   Y+  L+  ++V+T P  A++AF
Sbjct:   220 -YNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAF 271


>POMBASE|SPCC1020.06c [details] [associations]
            symbol:tal1 "transaldolase (predicted)" species:4896
            "Schizosaccharomyces pombe" [GO:0004801
            "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate
            glyceronetransferase activity" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005829
            "cytosol" evidence=IDA] [GO:0009052 "pentose-phosphate shunt,
            non-oxidative branch" evidence=IC] InterPro:IPR001585
            InterPro:IPR004730 InterPro:IPR013785 InterPro:IPR018225
            Pfam:PF00923 PROSITE:PS00958 PROSITE:PS01054 UniPathway:UPA00115
            PomBase:SPCC1020.06c GO:GO:0005829 GO:GO:0005634 EMBL:CU329672
            GenomeReviews:CU329672_GR Gene3D:3.20.20.70 PANTHER:PTHR10683
            GO:GO:0009052 KO:K00616 GO:GO:0004801 EMBL:AB010049 PIR:T40834
            PIR:T43308 RefSeq:NP_587953.1 ProteinModelPortal:O42700 SMR:O42700
            STRING:O42700 PRIDE:O42700 EnsemblFungi:SPCC1020.06c.1
            GeneID:2538977 KEGG:spo:SPCC1020.06c HOGENOM:HOG000281234
            OMA:EYKPQDA OrthoDB:EOG4XWK6K NextBio:20800152 TIGRFAMs:TIGR00874
            Uniprot:O42700
        Length = 322

 Score = 110 (43.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 28/73 (38%), Positives = 42/73 (57%)

Query:   175 GYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKEVISQG 229
             G VS EV  R + DTQ T+E A+ L K+     + R  V IKI +T   + + K++  +G
Sbjct:    91 GRVSTEVDARYSFDTQTTIEKARHLIKLYEAEGIGRERVLIKIASTYEGIQAAKQLEEEG 150

Query:   230 ISVNVTLIFSLAR 242
             I  N+TL+FS  +
Sbjct:   151 IHCNLTLLFSFVQ 163

 Score = 50 (22.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 26/105 (24%), Positives = 44/105 (41%)

Query:   333 LLWASTSVKNPAYPDTLYVAPLIGP--DTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEG 390
             LL++       A  +   ++P +G   D      ++   A  D G VS +   N  +  G
Sbjct:   157 LLFSFVQAVACAEANVTLISPFVGRILDFYKAKNNRDYTAQEDPGVVSVSNIFNYYKKFG 216

Query:   391 IYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSL 435
              Y  +  +G  +  VG   EL GVD F     +LL+ L    +++
Sbjct:   217 -YKTIV-MGASFRNVGEIKELAGVD-FLTISPALLEQLNNSTDAV 258


>UNIPROTKB|Q3AFT3 [details] [associations]
            symbol:tal "Probable transaldolase" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
            "biological_process" evidence=ND] HAMAP:MF_00494 InterPro:IPR001585
            InterPro:IPR004731 InterPro:IPR013785 InterPro:IPR018225
            InterPro:IPR022999 Pfam:PF00923 PROSITE:PS00958 PROSITE:PS01054
            UniPathway:UPA00115 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0006098
            EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG0176
            PANTHER:PTHR10683 TIGRFAMs:TIGR00875 HOGENOM:HOG000226073 KO:K00616
            OMA:DNYGFET ProtClustDB:PRK01362 GO:GO:0004801 RefSeq:YP_359001.1
            HSSP:Q9WYD1 ProteinModelPortal:Q3AFT3 SMR:Q3AFT3 STRING:Q3AFT3
            GeneID:3726772 KEGG:chy:CHY_0129 PATRIC:21273451
            BioCyc:CHYD246194:GJCN-129-MONOMER Uniprot:Q3AFT3
        Length = 214

 Score = 110 (43.8 bits), Expect = 0.00079, P = 0.00079
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query:   174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVN 233
             DG +S EV   ++ D +G V  A+ L K+   PN+ IKIP T   + ++K + S GI  N
Sbjct:    51 DGPISAEV---ISLDYEGMVREAEELSKL--HPNITIKIPMTWDGIRAVKTLSSMGIKTN 105

Query:   234 VTLIFS 239
             VTL+FS
Sbjct:   106 VTLVFS 111


>TIGR_CMR|CHY_0129 [details] [associations]
            symbol:CHY_0129 "putative transaldolase" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0004801
            "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate
            glyceronetransferase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] HAMAP:MF_00494 InterPro:IPR001585
            InterPro:IPR004731 InterPro:IPR013785 InterPro:IPR018225
            InterPro:IPR022999 Pfam:PF00923 PROSITE:PS00958 PROSITE:PS01054
            UniPathway:UPA00115 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0006098
            EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG0176
            PANTHER:PTHR10683 TIGRFAMs:TIGR00875 HOGENOM:HOG000226073 KO:K00616
            OMA:DNYGFET ProtClustDB:PRK01362 GO:GO:0004801 RefSeq:YP_359001.1
            HSSP:Q9WYD1 ProteinModelPortal:Q3AFT3 SMR:Q3AFT3 STRING:Q3AFT3
            GeneID:3726772 KEGG:chy:CHY_0129 PATRIC:21273451
            BioCyc:CHYD246194:GJCN-129-MONOMER Uniprot:Q3AFT3
        Length = 214

 Score = 110 (43.8 bits), Expect = 0.00079, P = 0.00079
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query:   174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVN 233
             DG +S EV   ++ D +G V  A+ L K+   PN+ IKIP T   + ++K + S GI  N
Sbjct:    51 DGPISAEV---ISLDYEGMVREAEELSKL--HPNITIKIPMTWDGIRAVKTLSSMGIKTN 105

Query:   234 VTLIFS 239
             VTL+FS
Sbjct:   106 VTLVFS 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      440       402   0.00099  117 3  11 23  0.45    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  239 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.90u 0.11s 32.01t   Elapsed:  00:00:02
  Total cpu time:  31.90u 0.11s 32.01t   Elapsed:  00:00:02
  Start:  Fri May 10 00:13:33 2013   End:  Fri May 10 00:13:35 2013

Back to top