BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036665
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R5E|A Chain A, Transaldolase From Corynebacterium Glutamicum
Length = 360
Score = 281 bits (719), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 159/354 (44%), Positives = 224/354 (63%), Gaps = 11/354 (3%)
Query: 85 QEGQSPWYDNLCRP-VT--DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQS 140
Q G S W D+L R +T +L +I V GVT+NPAIF A+S ++Y+ Q EL +
Sbjct: 9 QLGTSTWLDDLSRERITSGNLSQVIEEKSVVGVTTNPAIFAAAMSKGDSYDAQIAELKAA 68
Query: 141 GKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLH 200
G ++ A + + I D+++AC LF I++ +NG DG VS+EV PR++ D T+ AK L
Sbjct: 69 GASVDQAVYAMSIDDVRNACDLFTGIFESSNGYDGRVSIEVDPRISADRDATLAQAKELW 128
Query: 201 KVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE--ASG 258
V+RPNV IKIPAT +P+I + +++GISVNVTLIFS+ARY EVI A+++G++ A+
Sbjct: 129 AKVDRPNVMIKIPATPGSLPAITDALAEGISVNVTLIFSVARYREVIAAFIEGIKQAAAN 188
Query: 259 LSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGP 318
D+S++ SVASFFVSRVD IDK LE IG+ EAL LRG F
Sbjct: 189 GHDVSKIHSVASFFVSRVDVEIDKRLEAIGSDEALALRGKAGVANAQRAYAVYKELFDA- 247
Query: 319 RWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV- 377
A + +GA QR LWAST VKNPAY TLYV+ L GP+TV+TMP+ + A ++ G +
Sbjct: 248 ---AELPEGANTQRPLWASTGVKNPAYAATLYVSELAGPNTVNTMPEGTIDAVLEQGNLH 304
Query: 378 SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEK 431
T+ + +EA+ ++S LE LG+D V LE EGVD F S+ LL++++ +
Sbjct: 305 GDTLSNSAAEADAVFSQLEALGVDLADVFQVLETEGVDKFVASWSELLESMEAR 358
>pdb|3CLM|A Chain A, Crystal Structure Of Transaldolase (Yp_208650.1) From
Neisseria Gonorrhoeae Fa 1090 At 1.14 A Resolution
Length = 352
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 200/348 (57%), Gaps = 14/348 (4%)
Query: 87 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKD 143
GQ W DNL R + +L + GV GVTSNPAIFQKA + Y D+ L +
Sbjct: 12 GQQIWLDNLSRSLVQSGELAQXLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLS 71
Query: 144 IEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVV 203
+ Y + D++ AC + + ++ T G G+VS+EVSP LA D QGTVE A+ LH +
Sbjct: 72 PKQRYETXAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRLHAAI 131
Query: 204 NRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE---ASGLS 260
R N IK+PAT + +++ ++S GISVN+TL+FS A+ + AY G+ A+G S
Sbjct: 132 ARKNAXIKVPATDAGIDALETLVSDGISVNLTLLFSRAQTLKAYAAYARGIAKRLAAGQS 191
Query: 261 DLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRW 320
++ + VASFF+SRVD+ +D L P+ L+G F+ P +
Sbjct: 192 -VAHIQVVASFFISRVDSALDATL-----PD--RLKGKTAIALAKAAYQDWEQYFTAPEF 243
Query: 321 DALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRT 380
AL +GA + +LLWAST VKNPAYPDTLYV LIG TV+T+PD L+AF+DHG T
Sbjct: 244 AALEAQGANRVQLLWASTGVKNPAYPDTLYVDSLIGVHTVNTVPDATLKAFIDHGTAKAT 303
Query: 381 IDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 428
+ + EA + + LGID + +L+ +G+ F+++F+ LL L
Sbjct: 304 LTESADEARARLAEIAALGIDVETLAARLQEDGLKQFEEAFEKLLAPL 351
>pdb|3M16|A Chain A, Structure Of A Transaldolase From Oleispira Antarctica
Length = 329
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 25/151 (16%)
Query: 114 TSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIK-DIQDACKLFESIYDE--T 170
T+NP++ KA +N ++ L++ EA W L IK + +++ E++ D+
Sbjct: 38 TTNPSLILKAAKLAN-----YQHLIE-----EAIDWALQIKGNDKNSQTTLENVGDKLAV 87
Query: 171 NGG-------DGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPC 218
N G G +S EV RL+ DTQ TV A+ L ++ ++ + IKI +T
Sbjct: 88 NIGCEVLTSIPGVISTEVDARLSFDTQATVAKARKLIRLYQDAGIDSDRILIKIASTWEG 147
Query: 219 VPSIKEVISQGISVNVTLIFSLARYEEVIDA 249
+ + K + ++GI N+TL+F A+ + +A
Sbjct: 148 IQAAKILEAEGIHCNLTLLFHFAQAQACAEA 178
>pdb|3R8R|A Chain A, Transaldolase From Bacillus Subtilis
pdb|3R8R|B Chain B, Transaldolase From Bacillus Subtilis
pdb|3R8R|C Chain C, Transaldolase From Bacillus Subtilis
pdb|3R8R|D Chain D, Transaldolase From Bacillus Subtilis
pdb|3R8R|E Chain E, Transaldolase From Bacillus Subtilis
pdb|3R8R|F Chain F, Transaldolase From Bacillus Subtilis
pdb|3R8R|G Chain G, Transaldolase From Bacillus Subtilis
pdb|3R8R|H Chain H, Transaldolase From Bacillus Subtilis
pdb|3R8R|I Chain I, Transaldolase From Bacillus Subtilis
pdb|3R8R|J Chain J, Transaldolase From Bacillus Subtilis
pdb|3R8R|V Chain V, Transaldolase From Bacillus Subtilis
pdb|3R8R|K Chain K, Transaldolase From Bacillus Subtilis
pdb|3R8R|L Chain L, Transaldolase From Bacillus Subtilis
pdb|3R8R|M Chain M, Transaldolase From Bacillus Subtilis
pdb|3R8R|N Chain N, Transaldolase From Bacillus Subtilis
pdb|3R8R|W Chain W, Transaldolase From Bacillus Subtilis
pdb|3R8R|P Chain P, Transaldolase From Bacillus Subtilis
pdb|3R8R|R Chain R, Transaldolase From Bacillus Subtilis
pdb|3R8R|T Chain T, Transaldolase From Bacillus Subtilis
pdb|3R8R|U Chain U, Transaldolase From Bacillus Subtilis
Length = 212
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 51/179 (28%)
Query: 112 GVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETN 171
GVT+NP++ K + S ++D+ RE I D K
Sbjct: 24 GVTTNPSLVAKEANVS--FHDRLRE-------------------ITDVVK---------- 52
Query: 172 GGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGIS 231
G VS EV A++ +E K L K+ PN+ +KIP T+ + +++ + GI
Sbjct: 53 ---GSVSAEVISLKAEEM---IEEGKELAKIA--PNITVKIPMTSDGLKAVRALTDLGIK 104
Query: 232 VNVTLIFSL----------ARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLI 280
NVTLIF+ A Y LD + +GL +S V + F + +DT I
Sbjct: 105 TNVTLIFNANQALLAARAGATYVSPFLGRLDDIGHNGLDLISEVKQI--FDIHGLDTQI 161
>pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
pdb|1I2P|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
Length = 316
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVN-----RPNVYIKIPATAPCVPSIKEVISQG 229
G +S EV RL+ DT+ ++ AK L K+ N + IK+ +T + + +++ +G
Sbjct: 90 GRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEG 149
Query: 230 ISVNVTLIFSLAR 242
I+ N+TL+FS A+
Sbjct: 150 INCNLTLLFSFAQ 162
>pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
pdb|1I2N|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
Length = 316
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVN-----RPNVYIKIPATAPCVPSIKEVISQG 229
G +S EV RL+ DT+ ++ AK L K+ N + IK+ +T + + +++ +G
Sbjct: 90 GRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEG 149
Query: 230 ISVNVTLIFSLAR 242
I+ N+TL+FS A+
Sbjct: 150 INCNLTLLFSFAQ 162
>pdb|1I2R|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
pdb|1I2R|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
Length = 316
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVN-----RPNVYIKIPATAPCVPSIKEVISQG 229
G +S EV RL+ DT+ ++ AK L K+ N + IK+ +T + + +++ +G
Sbjct: 90 GRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEG 149
Query: 230 ISVNVTLIFSLAR 242
I+ N+TL+FS A+
Sbjct: 150 INCNLTLLFSFAQ 162
>pdb|1ONR|A Chain A, Structure Of Transaldolase B
pdb|1ONR|B Chain B, Structure Of Transaldolase B
Length = 316
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVN-----RPNVYIKIPATAPCVPSIKEVISQG 229
G +S EV RL+ DT+ ++ AK L K+ N + IK+ +T + + +++ +G
Sbjct: 90 GRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEG 149
Query: 230 ISVNVTLIFSLAR 242
I+ N+TL+FS A+
Sbjct: 150 INCNLTLLFSFAQ 162
>pdb|3KOF|A Chain A, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
pdb|3KOF|B Chain B, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
Length = 337
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVN-----RPNVYIKIPATAPCVPSIKEVISQG 229
G +S EV RL+ DT+ ++ AK L K+ N + IK+ +T + + +++ +G
Sbjct: 111 GRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEG 170
Query: 230 ISVNVTLIFSLAR 242
I+ N+TL+FS A+
Sbjct: 171 INCNLTLLFSFAQ 183
>pdb|3CWN|A Chain A, Escherichia Coli Transaldolase B Mutant F178y
pdb|3CWN|B Chain B, Escherichia Coli Transaldolase B Mutant F178y
Length = 337
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVN-----RPNVYIKIPATAPCVPSIKEVISQG 229
G +S EV RL+ DT+ ++ AK L K+ N + IK+ +T + + +++ +G
Sbjct: 111 GRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEG 170
Query: 230 ISVNVTLIFSLAR 242
I+ N+TL+FS A+
Sbjct: 171 INCNLTLLFSFAQ 183
>pdb|3S0C|A Chain A, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|B Chain B, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|C Chain C, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|D Chain D, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|E Chain E, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S1U|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1V|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1X|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
Length = 223
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 37/130 (28%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
V GVT+NP + K + Y D RE+++
Sbjct: 22 VDGVTTNPTLISKEAVNGKKYGDIIREILKIV---------------------------- 53
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
DG VSVEV ++ +G VE A+ +H + + N +KIP T + +IK + S+
Sbjct: 54 ----DGPVSVEV---VSTKYEGMVEEARKIHGLGD--NAVVKIPMTEDGLRAIKTLSSEH 104
Query: 230 ISVNVTLIFS 239
I+ N TL+F+
Sbjct: 105 INTNCTLVFN 114
>pdb|1WX0|A Chain A, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|B Chain B, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|C Chain C, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|D Chain D, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|E Chain E, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|F Chain F, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|G Chain G, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|H Chain H, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|I Chain I, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|J Chain J, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
Length = 223
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 31/128 (24%)
Query: 112 GVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETN 171
GVT+NP + KA ++ EA E ++ C ET
Sbjct: 24 GVTTNPTLVAKAFAAKG----------------EALTEEAFAAHLRAIC--------ETV 59
Query: 172 GGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGIS 231
GG VS EV+ A + + V + L + PN+ +K+P T + + K + ++GI
Sbjct: 60 GGP--VSAEVT---ALEAEAMVAEGRRLAAI--HPNIVVKLPTTEEGLKACKRLSAEGIK 112
Query: 232 VNVTLIFS 239
VN+TLIFS
Sbjct: 113 VNMTLIFS 120
>pdb|3HJZ|A Chain A, The Structure Of An Aldolase From Prochlorococcus Marinus
Length = 334
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKEVISQG 229
G VS EV RL+ DT+ TV+ A+ L + + + + IKI AT + + + + +G
Sbjct: 95 GRVSTEVDARLSFDTEATVKKARKLINLYKNFGIEKERILIKIAATWEGIKAAEILEKEG 154
Query: 230 ISVNVTLIFSLAR 242
I N+TL+F+ +
Sbjct: 155 IKCNLTLLFNFCQ 167
>pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
pdb|1I2Q|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
Length = 316
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVN-----RPNVYIKIPATAPCVPSIKEVISQG 229
G +S EV RL+ DT+ ++ AK L K+ N + IK+ +T + + +++ +G
Sbjct: 90 GRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEG 149
Query: 230 ISVNVTLIFSLAR 242
I+ N+ L+FS A+
Sbjct: 150 INCNLALLFSFAQ 162
>pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
pdb|1UCW|B Chain B, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
Length = 317
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVN-----RPNVYIKIPATAPCVPSIKEVISQG 229
G +S EV RL+ DT+ ++ AK L K+ N + I + +T + + +++ +G
Sbjct: 91 GRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIXLASTWQGIRAAEQLEKEG 150
Query: 230 ISVNVTLIFSLAR 242
I+ N+TL+FS A+
Sbjct: 151 INCNLTLLFSFAQ 163
>pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
pdb|1I2O|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
Length = 316
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVN-----RPNVYIKIPATAPCVPSIKEVISQG 229
G +S V RL+ DT+ ++ AK L K+ N + IK+ +T + + +++ +G
Sbjct: 90 GRISTAVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEG 149
Query: 230 ISVNVTLIFSLAR 242
I+ N+TL+FS A+
Sbjct: 150 INCNLTLLFSFAQ 162
>pdb|1VPX|A Chain A, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|B Chain B, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|C Chain C, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|D Chain D, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|E Chain E, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|F Chain F, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|G Chain G, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|H Chain H, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|I Chain I, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|J Chain J, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|K Chain K, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|L Chain L, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|M Chain M, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|N Chain N, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|O Chain O, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|P Chain P, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|Q Chain Q, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|R Chain R, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|S Chain S, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|T Chain T, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
Length = 230
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 40/133 (30%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
V GVT+NP + K E A ++ +K+I D K
Sbjct: 34 VDGVTTNPTLISK----------------------EGAEFKQRVKEICDLVK-------- 63
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
G VS EV ++ D +G V A+ L ++ V IKIP T + ++K + ++G
Sbjct: 64 -----GPVSAEV---VSLDYEGMVREARELAQI--SEYVVIKIPMTPDGIKAVKTLSAEG 113
Query: 230 ISVNVTLIFSLAR 242
I NVTL+FS A+
Sbjct: 114 IKTNVTLVFSPAQ 126
>pdb|3S1W|A Chain A, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|B Chain B, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|C Chain C, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|D Chain D, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|E Chain E, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
Length = 223
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 37/130 (28%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
V GVT+NP + K + Y D RE+++
Sbjct: 22 VDGVTTNPTLISKEAVNGKKYGDIIREILKIV---------------------------- 53
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
DG VSVEV ++ +G VE A+ +H + + N + IP T + +IK + S+
Sbjct: 54 ----DGPVSVEV---VSTKYEGMVEEARKIHGLGD--NAVVAIPMTEDGLRAIKTLSSEH 104
Query: 230 ISVNVTLIFS 239
I+ N TL+F+
Sbjct: 105 INTNCTLVFN 114
>pdb|3TK7|A Chain A, 2.0 Angstrom Resolution Crystal Structure Of Transaldolase
B (Tala) From Francisella Tularensis In Covalent Complex
With Fructose 6- Phosphate
pdb|3TK7|B Chain B, 2.0 Angstrom Resolution Crystal Structure Of Transaldolase
B (Tala) From Francisella Tularensis In Covalent Complex
With Fructose 6- Phosphate
pdb|3TNO|A Chain A, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3TNO|B Chain B, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3UPB|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis In Covalent Complex With
Arabinose-5-Phosphate
pdb|3UPB|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis In Covalent Complex With
Arabinose-5-Phosphate
pdb|4E0C|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis (Phosphate-Free)
pdb|4E0C|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis (Phosphate-Free)
Length = 345
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 174 DGYVSVEVSPRLADDTQGTVEAAK-----WLHKVVNRPNVYIKIPATAPCVPSIKEVISQ 228
+G VS EV R++ ++ T++ AK + + + V IKI AT + + K + +
Sbjct: 117 EGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIKIAATWEGIKAAKLLQKE 176
Query: 229 GISVNVTLIFSLARYEEVIDA 249
GI+ N+TLIF A+ + +A
Sbjct: 177 GINCNLTLIFDKAQAKACAEA 197
>pdb|3IGX|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis.
pdb|3IGX|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis
Length = 324
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 174 DGYVSVEVSPRLADDTQGTVEAAK-----WLHKVVNRPNVYIKIPATAPCVPSIKEVISQ 228
+G VS EV R++ ++ T++ AK + + + V IKI AT + + K + +
Sbjct: 96 EGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIKIAATWEGIKAAKLLQKE 155
Query: 229 GISVNVTLIFSLARYEEVIDA 249
GI+ N+TLIF A+ + +A
Sbjct: 156 GINCNLTLIFDKAQAKACAEA 176
>pdb|1L6W|A Chain A, Fructose-6-Phosphate Aldolase
pdb|1L6W|B Chain B, Fructose-6-Phosphate Aldolase
pdb|1L6W|C Chain C, Fructose-6-Phosphate Aldolase
pdb|1L6W|D Chain D, Fructose-6-Phosphate Aldolase
pdb|1L6W|E Chain E, Fructose-6-Phosphate Aldolase
pdb|1L6W|F Chain F, Fructose-6-Phosphate Aldolase
pdb|1L6W|G Chain G, Fructose-6-Phosphate Aldolase
pdb|1L6W|H Chain H, Fructose-6-Phosphate Aldolase
pdb|1L6W|I Chain I, Fructose-6-Phosphate Aldolase
pdb|1L6W|J Chain J, Fructose-6-Phosphate Aldolase
Length = 220
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQ 228
E GG G + +V +A +G V A L ++ ++ +K+P TA + +IK + ++
Sbjct: 48 EAMGGQGRLFAQV---MATTAEGMVNDALKLRSIIA--DIVVKVPVTAEGLAAIKMLKAE 102
Query: 229 GISVNVTLIFSLAR-------YEEVIDAYLDGLEASGLSDLSRVT 266
GI T ++ A+ E + Y++ ++A G S + VT
Sbjct: 103 GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVT 147
>pdb|3TE9|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TE9|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TKF|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate.
pdb|3TKF|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate
Length = 345
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 174 DGYVSVEVSPRLADDTQGTVEAAK-----WLHKVVNRPNVYIKIPATAPCVPSIKEVISQ 228
+G VS EV R++ ++ T++ AK + + + V I I AT + + K + +
Sbjct: 117 EGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAATWEGIKAAKLLQKE 176
Query: 229 GISVNVTLIFSLARYEEVIDA 249
GI+ N+TLIF A+ + +A
Sbjct: 177 GINCNLTLIFDKAQAKACAEA 197
>pdb|1GQW|A Chain A, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1GQW|B Chain B, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1GY9|A Chain A, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1GY9|B Chain B, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1OS7|A Chain A, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OS7|B Chain B, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OS7|C Chain C, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OS7|D Chain D, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OTJ|A Chain A, Crystal Structure Of Apo (Iron-Free) Taud
pdb|1OTJ|B Chain B, Crystal Structure Of Apo (Iron-Free) Taud
pdb|1OTJ|C Chain C, Crystal Structure Of Apo (Iron-Free) Taud
pdb|1OTJ|D Chain D, Crystal Structure Of Apo (Iron-Free) Taud
Length = 283
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 326 KGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQA-FVDHGAVSRTIDLN 384
+ +++ W KNP PL+ P V T P QA FV+ G +R +D++
Sbjct: 165 RKTEEEHQRWREAVAKNP---------PLLHP-VVRTHPVSGKQALFVNEGFTTRIVDVS 214
Query: 385 VSEAEGIYSAL 395
E+E + S L
Sbjct: 215 EKESEALLSFL 225
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 116 NPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWE 150
NP + ++ + YN+ R LV +GKD EAAY+
Sbjct: 484 NPTTYGIGMTY-HCYNEMLRMLVAAGKDSEAAYFR 517
>pdb|2L7N|A Chain A, Nmr Structure Of The B Domain Of Talin
Length = 168
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 54 HPLKASLVVKCSQSGGNGSSAKRTTLHDLYEQ--EGQSPWYDNLCRPVTDLLPLIASGVR 111
PL + KC+Q GN + A + + L + +G + R V L +A R
Sbjct: 38 KPLPGETMEKCTQDLGNSTKAVSSAIAKLLGEIAQGNENYAGIAARDVAGGLRSLAQAAR 97
Query: 112 GV---TSNPAIFQKAISSSNAYNDQFRELVQSGK 142
GV TS+PA+ + +++ D+ L++ K
Sbjct: 98 GVAALTSDPAVQAIVLDTASDVLDKASSLIEEAK 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,430,925
Number of Sequences: 62578
Number of extensions: 446536
Number of successful extensions: 851
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 29
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)