Query 036665
Match_columns 440
No_of_seqs 218 out of 1461
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:18:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03343 transaldolase; Valida 100.0 5E-96 1E-100 744.9 37.6 360 76-436 2-367 (368)
2 TIGR00876 tal_mycobact transal 100.0 2.2E-92 4.8E-97 711.8 34.8 340 86-426 1-349 (350)
3 PRK09533 bifunctional transald 100.0 2.4E-88 5.2E-93 751.8 38.7 359 77-437 2-376 (948)
4 cd00955 Transaldolase_like Tra 100.0 8.5E-88 1.8E-92 678.6 32.9 332 89-423 1-338 (338)
5 PRK03903 transaldolase; Provis 100.0 4.6E-69 1E-73 529.0 29.6 274 129-428 1-274 (274)
6 KOG2772 Transaldolase [Carbohy 100.0 3E-62 6.5E-67 476.8 20.3 324 64-436 1-336 (337)
7 PRK05269 transaldolase B; Prov 100.0 2.2E-60 4.9E-65 477.5 27.1 303 77-432 3-317 (318)
8 PRK12346 transaldolase A; Prov 100.0 7.6E-60 1.6E-64 472.1 28.0 299 77-432 2-316 (316)
9 PF00923 Transaldolase: Transa 100.0 7E-60 1.5E-64 468.3 21.4 285 90-428 1-287 (287)
10 TIGR00874 talAB transaldolase. 100.0 3.7E-59 7.9E-64 467.6 26.3 303 77-432 1-317 (317)
11 cd00957 Transaldolase_TalAB Tr 100.0 6.1E-57 1.3E-61 451.4 25.6 300 77-428 1-313 (313)
12 PRK12309 transaldolase/EF-hand 100.0 6.7E-57 1.4E-61 463.3 26.0 312 76-437 3-328 (391)
13 PTZ00411 transaldolase-like pr 100.0 2.6E-56 5.7E-61 449.6 25.0 309 77-433 3-331 (333)
14 cd00439 Transaldolase Transald 100.0 3.1E-56 6.8E-61 435.4 24.7 241 89-371 1-241 (252)
15 COG0176 MipB Transaldolase [Ca 100.0 1.6E-54 3.5E-59 417.3 20.5 232 87-429 3-238 (239)
16 TIGR00875 fsa_talC_mipB fructo 100.0 1.1E-45 2.4E-50 353.0 19.2 208 90-390 3-211 (213)
17 PRK12655 fructose-6-phosphate 100.0 2.5E-45 5.4E-50 352.0 19.9 211 90-391 3-214 (220)
18 PRK01362 putative translaldola 100.0 2.6E-45 5.6E-50 350.7 19.5 208 90-390 3-211 (214)
19 PRK12656 fructose-6-phosphate 100.0 2.6E-45 5.5E-50 352.2 19.4 212 90-391 3-216 (222)
20 PRK12653 fructose-6-phosphate 100.0 8.1E-45 1.7E-49 348.6 19.8 211 90-391 3-214 (220)
21 PRK12376 putative translaldola 100.0 5.4E-44 1.2E-48 345.7 18.7 213 89-390 7-230 (236)
22 TIGR02134 transald_staph trans 100.0 3.4E-43 7.4E-48 339.8 17.9 213 88-389 6-229 (236)
23 cd00956 Transaldolase_FSA Tran 100.0 7.4E-41 1.6E-45 319.4 18.9 207 90-389 2-210 (211)
24 KOG2772 Transaldolase [Carbohy 93.3 0.044 9.5E-07 55.5 1.9 51 334-384 239-289 (337)
25 TIGR01182 eda Entner-Doudoroff 86.4 8.5 0.00018 37.2 10.9 147 186-377 16-171 (204)
26 COG5016 Pyruvate/oxaloacetate 84.3 3.6 7.8E-05 43.8 7.7 126 139-276 109-239 (472)
27 PRK06015 keto-hydroxyglutarate 81.4 14 0.0003 35.8 10.0 112 186-336 12-126 (201)
28 PRK07114 keto-hydroxyglutarate 74.0 27 0.00059 34.2 9.8 112 186-336 23-141 (222)
29 PF01081 Aldolase: KDPG and KH 72.9 15 0.00032 35.3 7.6 146 186-377 16-171 (196)
30 PRK09875 putative hydrolase; P 71.7 52 0.0011 33.5 11.6 98 142-248 96-201 (292)
31 PRK05660 HemN family oxidoredu 67.2 47 0.001 34.7 10.4 78 175-258 94-187 (378)
32 PRK13347 coproporphyrinogen II 66.5 40 0.00087 36.0 10.0 79 174-258 138-232 (453)
33 PRK05718 keto-hydroxyglutarate 65.1 73 0.0016 30.9 10.6 72 186-275 23-98 (212)
34 PRK06552 keto-hydroxyglutarate 62.9 68 0.0015 31.1 9.9 102 186-309 21-127 (213)
35 PRK07379 coproporphyrinogen II 61.6 77 0.0017 33.4 10.9 70 174-249 101-186 (400)
36 PRK09249 coproporphyrinogen II 60.6 67 0.0015 34.3 10.4 78 175-258 138-231 (453)
37 PRK05904 coproporphyrinogen II 58.1 1.1E+02 0.0025 31.6 11.3 79 174-258 89-183 (353)
38 cd02809 alpha_hydroxyacid_oxid 55.9 2.3E+02 0.0049 28.5 13.3 72 175-249 116-192 (299)
39 PRK09058 coproporphyrinogen II 55.0 94 0.002 33.3 10.3 95 156-258 133-243 (449)
40 PRK05799 coproporphyrinogen II 54.9 1.2E+02 0.0025 31.4 10.8 78 175-258 86-179 (374)
41 PRK08446 coproporphyrinogen II 54.8 1.5E+02 0.0033 30.5 11.6 78 175-258 85-178 (350)
42 PRK13398 3-deoxy-7-phosphohept 54.5 86 0.0019 31.5 9.3 72 174-248 25-109 (266)
43 PRK08208 coproporphyrinogen II 52.0 1.3E+02 0.0028 31.9 10.8 85 176-273 129-229 (430)
44 TIGR00539 hemN_rel putative ox 49.3 1.5E+02 0.0033 30.5 10.5 79 174-258 86-180 (360)
45 PRK05628 coproporphyrinogen II 47.6 1.7E+02 0.0038 30.2 10.7 77 176-258 96-188 (375)
46 PRK09261 phospho-2-dehydro-3-d 46.0 2E+02 0.0044 30.2 10.7 77 171-248 48-155 (349)
47 CHL00162 thiG thiamin biosynth 45.9 1.1E+02 0.0024 31.0 8.4 77 185-276 79-169 (267)
48 cd00003 PNPsynthase Pyridoxine 44.7 2E+02 0.0044 28.6 10.0 78 174-276 62-155 (234)
49 PF05690 ThiG: Thiazole biosyn 43.4 70 0.0015 32.0 6.5 133 177-365 63-205 (247)
50 PRK09057 coproporphyrinogen II 43.4 2E+02 0.0044 29.9 10.5 64 175-244 91-169 (380)
51 COG0800 Eda 2-keto-3-deoxy-6-p 42.8 1.9E+02 0.0041 28.4 9.3 145 186-375 21-174 (211)
52 PLN02424 ketopantoate hydroxym 41.3 1.7E+02 0.0038 30.5 9.3 105 102-233 47-155 (332)
53 TIGR00538 hemN oxygen-independ 39.7 2.2E+02 0.0047 30.4 10.2 78 175-258 138-231 (455)
54 COG1850 RbcL Ribulose 1,5-bisp 39.7 60 0.0013 34.7 5.7 115 110-234 157-279 (429)
55 PRK08599 coproporphyrinogen II 38.9 3.3E+02 0.0072 28.1 11.2 78 175-258 87-180 (377)
56 PRK08898 coproporphyrinogen II 38.8 2.7E+02 0.006 29.1 10.6 69 175-249 109-192 (394)
57 PRK06294 coproporphyrinogen II 38.5 2.6E+02 0.0057 29.0 10.3 70 174-249 89-174 (370)
58 PF01645 Glu_synthase: Conserv 37.7 1.2E+02 0.0025 32.2 7.6 126 186-371 184-310 (368)
59 PRK09426 methylmalonyl-CoA mut 36.8 2.1E+02 0.0046 32.9 10.0 136 187-366 206-359 (714)
60 PRK12755 phospho-2-dehydro-3-d 36.6 3.8E+02 0.0083 28.3 11.0 77 171-248 49-156 (353)
61 PRK06582 coproporphyrinogen II 35.3 3.4E+02 0.0074 28.5 10.7 62 174-241 97-172 (390)
62 COG2022 ThiG Uncharacterized e 34.6 2.2E+02 0.0048 28.6 8.4 120 186-360 79-208 (262)
63 PF13653 GDPD_2: Glycerophosph 33.5 17 0.00037 24.8 0.5 17 100-116 11-27 (30)
64 PF06230 DUF1009: Protein of u 33.4 2.4E+02 0.0052 27.7 8.4 91 153-249 96-207 (214)
65 smart00052 EAL Putative diguan 31.5 84 0.0018 29.1 5.0 47 77-124 137-183 (241)
66 cd03679 MM_CoA_mutase_alpha_li 31.2 3.2E+02 0.0068 30.5 9.9 95 245-366 245-353 (536)
67 cd01948 EAL EAL domain. This d 31.2 97 0.0021 28.7 5.3 60 77-138 136-195 (240)
68 PF13407 Peripla_BP_4: Peripla 30.6 3.7E+02 0.0079 25.1 9.2 72 148-234 12-85 (257)
69 PTZ00314 inosine-5'-monophosph 30.0 4.9E+02 0.011 28.5 11.0 72 174-249 227-302 (495)
70 cd03680 MM_CoA_mutase_ICM_like 29.6 3.8E+02 0.0083 29.9 10.2 108 216-366 234-357 (538)
71 TIGR00642 mmCoA_mut_beta methy 29.5 3.9E+02 0.0085 30.3 10.4 135 187-366 195-347 (619)
72 PLN02925 4-hydroxy-3-methylbut 27.7 3E+02 0.0064 31.8 8.9 77 172-249 91-173 (733)
73 TIGR00641 acid_CoA_mut_N methy 27.2 4.1E+02 0.0089 29.6 9.9 48 216-279 214-261 (528)
74 TIGR03128 RuMP_HxlA 3-hexulose 27.2 1.7E+02 0.0037 27.2 6.2 52 186-241 8-65 (206)
75 cd03677 MM_CoA_mutase_beta Coe 26.7 4.5E+02 0.0098 28.3 9.9 94 244-366 205-312 (424)
76 cd08610 GDPD_GDE6 Glycerophosp 26.4 1.3E+02 0.0029 30.9 5.7 44 101-156 258-302 (316)
77 TIGR00222 panB 3-methyl-2-oxob 26.1 6.2E+02 0.013 25.6 10.2 49 183-233 84-133 (263)
78 PF02548 Pantoate_transf: Keto 26.0 2.2E+02 0.0049 28.7 7.0 67 174-243 77-145 (261)
79 cd00512 MM_CoA_mutase Coenzyme 25.9 4.8E+02 0.01 27.9 9.8 135 187-366 134-287 (399)
80 PRK00208 thiG thiazole synthas 25.7 3.4E+02 0.0074 27.3 8.1 64 184-249 70-143 (250)
81 PRK00694 4-hydroxy-3-methylbut 25.3 3.4E+02 0.0074 30.6 8.7 77 172-249 26-108 (606)
82 KOG2666 UDP-glucose/GDP-mannos 25.2 1.3E+02 0.0027 31.8 5.1 76 174-254 145-226 (481)
83 PRK05265 pyridoxine 5'-phospha 24.3 6.9E+02 0.015 25.0 9.9 78 174-276 65-158 (239)
84 cd04728 ThiG Thiazole synthase 24.3 3.6E+02 0.0078 27.1 8.0 64 184-249 70-143 (248)
85 TIGR00676 fadh2 5,10-methylene 23.6 4.6E+02 0.0099 26.1 8.8 78 177-258 1-86 (272)
86 TIGR01302 IMP_dehydrog inosine 23.6 5.9E+02 0.013 27.3 10.2 59 190-249 223-285 (450)
87 TIGR00677 fadh2_euk methylenet 23.6 4.9E+02 0.011 26.2 9.0 79 176-258 1-87 (281)
88 KOG2335 tRNA-dihydrouridine sy 22.4 4E+02 0.0086 28.3 8.2 72 174-248 141-223 (358)
89 TIGR00612 ispG_gcpE 1-hydroxy- 21.6 5.9E+02 0.013 26.9 9.2 76 172-249 15-92 (346)
90 TIGR00034 aroFGH phospho-2-deh 20.8 1E+03 0.022 25.2 10.8 71 171-242 43-144 (344)
91 TIGR01361 DAHP_synth_Bsub phos 20.5 5.9E+02 0.013 25.3 8.8 69 177-248 26-107 (260)
92 cd00945 Aldolase_Class_I Class 20.3 6.2E+02 0.013 22.6 10.6 59 175-237 49-121 (201)
93 PRK05567 inosine 5'-monophosph 20.2 5.9E+02 0.013 27.6 9.4 58 191-249 228-289 (486)
No 1
>PRK03343 transaldolase; Validated
Probab=100.00 E-value=5e-96 Score=744.91 Aligned_cols=360 Identities=54% Similarity=0.841 Sum_probs=345.0
Q ss_pred cCcHHHHHhhcCcccccccccccc---ccHHHHHh-CCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHH
Q 036665 76 RTTLHDLYEQEGQSPWYDNLCRPV---TDLLPLIA-SGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWEL 151 (440)
Q Consensus 76 ~~~l~~l~~~~gqs~W~D~i~R~~---~el~~li~-~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L 151 (440)
.|+|++|+ ++|||+|||+|+|++ ++|+++|+ .|++|+||||+||.+|+.+++.|+++|++++..|++.+++||+|
T Consensus 2 ~~~l~~l~-~~g~s~WlD~i~R~~l~~g~l~~lI~~~g~~GaTsNPsIf~~Ai~~~~~Y~~~i~~l~~~~~~~~~~~~~L 80 (368)
T PRK03343 2 MNPLQALS-ALGQSIWLDDLSRDRLTSGNLARLIDEKGVVGVTSNPAIFQKAIAGGDAYDAQIAELAAAGADVEEAYEEL 80 (368)
T ss_pred CcHHHHHH-HcCcEEeecCCccccccCcCHHHHHHhCCCCeeccCHHHHHHHHhCCHHHHHHHHHHHHhcCChhHHHHHH
Confidence 37899997 699999999999998 58999997 68999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHhhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCc
Q 036665 152 VIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGIS 231 (440)
Q Consensus 152 ~i~di~~a~d~l~p~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~ 231 (440)
+++||+.|||+|+|+|+.++|.+|+||+||||++++|+++||++|++|++++++||+|||||+||+|++||++|+++||+
T Consensus 81 a~~di~~AaD~L~p~~e~~~g~~G~VS~EVdp~la~d~e~~i~eA~~L~~~~~~~nv~IKIPaT~~Gi~Ai~~L~~~GI~ 160 (368)
T PRK03343 81 TTADVRNACDVLRPVYEATGGVDGRVSIEVSPRLAHDTEATIAEARRLWAAVDRPNLMIKIPATPEGLPAIEALIAEGIS 160 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccccccCHHHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCHHHHHHHHHHHHHHHHHc--CCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHH
Q 036665 232 VNVTLIFSLARYEEVIDAYLDGLEAS--GLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQ 309 (440)
Q Consensus 232 vN~TlIFS~~Qa~a~aqA~lagl~~a--G~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~ 309 (440)
||+|+|||++||.+|++||++|++++ .|.|++++.+||||||||+|+++|+.+++.+.+.+.++.|..+|++++++|+
T Consensus 161 vn~TliFS~~Qa~a~~eA~~~Gl~~~~~~G~~~~~~~sviS~FVsRiD~~~d~~l~~~~~~~~~~l~g~~gVa~ak~~Y~ 240 (368)
T PRK03343 161 VNVTLIFSVERYRAVADAYLRGLEKRLAAGHDLSKIHSVASFFVSRVDTEVDKRLEAIGTDEALALRGKAAIANARLAYQ 240 (368)
T ss_pred eeEeeecCHHHHHHHHHHHHHHHHHHHHcCCCcccCCeEEEeehhhhHhhhhhhhhhcCcchhhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999863 1489999999999999999999999999877665556789999999999999
Q ss_pred HHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHh
Q 036665 310 LYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAE 389 (440)
Q Consensus 310 ~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~ 389 (440)
+|+++|+|+||+.|+++|+++||+||||||||||+|++++||.+|+|||+||||||++|++|.+|+.+.++++...++++
T Consensus 241 ~~~~~~~~~~~~~l~~~ga~~qr~LwAsT~vk~~~~~~~~yV~~L~G~dtvnT~p~~tl~a~~~~g~~~~~l~~~~~~a~ 320 (368)
T PRK03343 241 AYEEVFASPRWAALAAAGARPQRPLWASTGTKNPAYSDTLYVDELVAPDTVNTMPEATLDAFADHGEVADTLTGDYEEAQ 320 (368)
T ss_pred HHHHhcCcchhHHHHhcCCcccccceeccccCCCccCccccHHHccCCCccCCCCHHHHHHHHhcCCccccCCCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888998888888
Q ss_pred hHHhHhHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036665 390 GIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLK 436 (440)
Q Consensus 390 ~~~~~l~~~~id~~~~~~~L~~eGi~~F~~~~~~Ll~~l~~k~~~l~ 436 (440)
.+++.++..|+|++.++++|++|||++|+++|++|++.|++|+++++
T Consensus 321 ~~l~~l~~~gid~d~~~~~ll~eGi~~F~~~~~~Ll~~l~~k~~~~~ 367 (368)
T PRK03343 321 AVLAALAALGIDLDDVTAVLEEEGVDKFEASWNELLASLEAKLDALA 367 (368)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998765
No 2
>TIGR00876 tal_mycobact transaldolase, mycobacterial type. This model describes one of three related but easily separable famiiles of known and putative transaldolases. This family and the family typified by E. coli TalA and TalB both contain experimentally verified examples.
Probab=100.00 E-value=2.2e-92 Score=711.78 Aligned_cols=340 Identities=39% Similarity=0.635 Sum_probs=327.8
Q ss_pred cCcccccccccccc---ccHHHHHhC-CCCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 036665 86 EGQSPWYDNLCRPV---TDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACK 161 (440)
Q Consensus 86 ~gqs~W~D~i~R~~---~el~~li~~-Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d 161 (440)
.|||+|||+|+|++ ++|+++|+. |++|+||||+||.+|+.+++.|+++|++++.+|.+.+++|+.|+++||++|||
T Consensus 1 ~G~S~WlD~i~R~~l~~G~l~~lI~~~~~~G~TsNPsif~~Ai~~~~~Y~~~i~~l~~~g~~~~~~~~~La~~di~~A~D 80 (350)
T TIGR00876 1 AEFSLWCDDIERDFLENGDFLELIDKGAICGATSNPSIFCEAISEGAFYDAEIAELAAKGADADAIIETLALDDILQACD 80 (350)
T ss_pred CCeeeeecCCChhhhcCCCHHHHHHhCCCCcccCCHHHHHHHHhCCHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHH
Confidence 38999999999999 389999965 79999999999999999888999999999999999999999999999999999
Q ss_pred HhHHhhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHH
Q 036665 162 LFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLA 241 (440)
Q Consensus 162 ~l~p~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~ 241 (440)
+|+|+|+.++|.+|+||+||||++++|+++|+++|++|++++++||+|||||+|++||+||++|+++||+||+|+|||++
T Consensus 81 ~L~p~~e~~~g~~G~VS~EVdP~la~d~e~~i~eA~~L~~~~~~~nv~IKIPaT~~Gi~Ai~~L~~~GI~vNvTliFS~~ 160 (350)
T TIGR00876 81 ALMPLWEDSDGNDGRISIEIDPFLADDAAKSIDEAIELFKILDRPNLFIKIPASEAGIEAISALLAAGIPVNVTLIFSPK 160 (350)
T ss_pred HHHHHHHHhCCCCCcEEEEEccccccCHHHHHHHHHHHHHhhCCCCEEEEeCCCHHHHHHHHHHHHCCCceeEEEeecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---cCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccC-C
Q 036665 242 RYEEVIDAYLDGLEA---SGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFS-G 317 (440)
Q Consensus 242 Qa~a~aqA~lagl~~---aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~-~ 317 (440)
||.+|++||++|+++ +| .|++++++|+|+||||+|+.+|+.++..+...+.++.|+.+|+||+.+|+.|++.|+ +
T Consensus 161 q~~~v~eA~~~Gl~~~~~~G-~~~~~v~sVaS~FvsRvD~~vD~~l~~~~~~~a~~l~g~~gIanA~l~y~~~~e~~~~~ 239 (350)
T TIGR00876 161 IAGEIADALAKEAEKARQAG-HSLSKIHAVASFFVSRFDKEIDKLLDKIGSRQALELQAQAGIANARLAYATYREVFEDS 239 (350)
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCcccCceEEEEeeehhhhhhhhhhhhccchhHHHHhhhHHHHHHHHHHHHHHHHhccC
Confidence 999999999999976 35 899999999999999999999999999888778889999999999999999999997 9
Q ss_pred cchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccc-cccccchhHHhhHHhHhH
Q 036665 318 PRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALE 396 (440)
Q Consensus 318 ~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~-~~l~~~~~~a~~~~~~l~ 396 (440)
+||+.|+++|+++||+||||||+|||.|++++||.+|+|+|+|||||++||++|.+||.+. .++....++++++++.|+
T Consensus 240 ~~~~~L~~~ga~~qR~LwASTgvK~p~~~d~~YV~~Ligp~tVnT~P~~Tl~Af~dhg~~~~~~l~~~~~~a~~~l~~l~ 319 (350)
T TIGR00876 240 DCYRQIKQDAAKLQRPLFASTGVKNNDLADDLYIKALCAKHSINTAPEEAIDAVADDGNIECDTPLGTASDAEAFFDELG 319 (350)
T ss_pred HHHHHHHHCCCCCCceeeecCCCCCCcccccccHHHhcCCCccccCCHHHHHHHHHcCCcCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999974 668888889999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036665 397 KLGIDWNYVGTQLELEGVDSFKKSFDSLLD 426 (440)
Q Consensus 397 ~~~id~~~~~~~L~~eGi~~F~~~~~~Ll~ 426 (440)
+.|||++.++++|++||+++|+++|++|++
T Consensus 320 ~~GId~~~v~~~L~~eGv~~F~~a~~~LL~ 349 (350)
T TIGR00876 320 AHGIDLEDTAAKLEEEGLIAFEASFEELLQ 349 (350)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999985
No 3
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=100.00 E-value=2.4e-88 Score=751.82 Aligned_cols=359 Identities=51% Similarity=0.814 Sum_probs=342.1
Q ss_pred CcHHHHHhhcCcccccccccccc---ccHHHHHhC-CCCccccChHHHHHHHhCCcchHHHHHHHHHcC-CChHHHHHHH
Q 036665 77 TTLHDLYEQEGQSPWYDNLCRPV---TDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSG-KDIEAAYWEL 151 (440)
Q Consensus 77 ~~l~~l~~~~gqs~W~D~i~R~~---~el~~li~~-Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g-~~~~e~y~~L 151 (440)
|+|++|. ++|||+|||+|+|++ ++|++||+. |++|+||||+||.+||.+++.|+++|++++.+| ++.+++||.|
T Consensus 2 ~~l~~l~-~~gqsiWlD~l~R~~l~~g~l~~li~~~~~~GvTsNPsIf~~Ai~~~~~Y~~~i~~l~~~~~~~~~~~~~~L 80 (948)
T PRK09533 2 NPLKALA-QHGQSVWLDFLARGFIAKGELKRLVEEDGLRGVTSNPAIFEKAIGSSDEYDDAIKAALAEGDRSVIELYETL 80 (948)
T ss_pred chHHHHH-HcCcEEeecccchhcccCchHHHHHHhCCCceeecCHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7899996 699999999999999 489999975 899999999999999998999999999999988 8899999999
Q ss_pred HHHHHHHHHHHhHHhhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCc
Q 036665 152 VIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGIS 231 (440)
Q Consensus 152 ~i~di~~a~d~l~p~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~ 231 (440)
+++||+.|||+|+|+|++++|.+|+||+||||++++|+++||++|++|++.+++||+|||||+|++||+||++|+++||+
T Consensus 81 ~~~di~~A~d~l~p~~~~~~g~~G~VS~EV~P~la~d~e~~i~eA~~L~~~v~~~nv~IKIPaT~~Gl~Ai~~L~~~GI~ 160 (948)
T PRK09533 81 AIEDIQAAADVLRPVYDATDGADGFVSLEVSPYLALDTEGTIAEARRLWAAVDRPNLMIKVPATPEGLPAIRQLIAEGIN 160 (948)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeEEEEEecccccCHHHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHHHCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCHHHHHHHHHHHHHHHHH---cCCCCCCccceEEeechhhhhHHHhhhhhhc-------CCcccc-ccchHHH
Q 036665 232 VNVTLIFSLARYEEVIDAYLDGLEA---SGLSDLSRVTSVASFFVSRVDTLIDKMLEKI-------GTPEAL-DLRGKAA 300 (440)
Q Consensus 232 vN~TlIFS~~Qa~a~aqA~lagl~~---aG~~~~~~vasviSpfVgRiD~~~d~~l~~~-------g~~~a~-~~~G~~~ 300 (440)
||+|+|||++||.+|+|||++|+++ +| +|++++++|+||||||+|+++|+++.+. ++.++. .++|+.+
T Consensus 161 vn~TliFS~~q~~~~~~A~~~gle~~~~aG-~d~~~i~sv~S~fvsRiD~~~d~~l~~~~~~~~dp~~~~~~~~l~gk~~ 239 (948)
T PRK09533 161 VNVTLLFSQDVYEEVAEAYISGLEARAAKG-GDPSHVASVASFFVSRIDSAVDKRLDEKIAAANDPAEKAALEALKGKVA 239 (948)
T ss_pred eeEEEEecHHHHHHHHHHHHHHHHHHHhcC-CCcccCceEEEEehhhHHHHHHhhhhhhccccCCcchhhhhhhhccHHH
Confidence 9999999999999999999999975 45 8999999999999999999999999986 222333 3889999
Q ss_pred HHHHHHHHHHHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccc
Q 036665 301 VAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRT 380 (440)
Q Consensus 301 Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~ 380 (440)
|+||+.+|+.|+++|+|+||+.|+++|+++||+||||||+|||.|++++||.+|+|+|+|||||++|+++|.+|+.+..+
T Consensus 240 ianAk~ay~~~~~~~~~~rw~~l~~~ga~~qR~LwASTg~K~p~~~d~~Yv~~Lig~~tVnT~P~~tl~A~~~hg~~~~~ 319 (948)
T PRK09533 240 IANAKLAYQRYKRLFAGPRWEALAAKGAKPQRLLWASTGTKNKAYSDVLYVEELIGPDTVNTMPPATLDAFRDHGKVRAT 319 (948)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHhCCCCcceeEEeecCCCCcccCCcccHHHhcCcCcccCCCHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cccchhHHhhHHhHhHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036665 381 IDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLKL 437 (440)
Q Consensus 381 l~~~~~~a~~~~~~l~~~~id~~~~~~~L~~eGi~~F~~~~~~Ll~~l~~k~~~l~~ 437 (440)
++...++++++++.|++.|||++.++++|++||+++|+++|++|++.+++|+.++.+
T Consensus 320 ~~~~~~~a~~~l~~l~~~gId~~~v~~~L~~eGv~~F~~a~~~Ll~~~~~k~~~~~~ 376 (948)
T PRK09533 320 LEEDVDEARAVLADLAEAGISLDAVTDKLVAEGVQLFADAFDKLLGAVAEKREALLG 376 (948)
T ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999887543
No 4
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=100.00 E-value=8.5e-88 Score=678.61 Aligned_cols=332 Identities=63% Similarity=0.950 Sum_probs=316.6
Q ss_pred cccccccccccc---cHHHHHh-CCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhH
Q 036665 89 SPWYDNLCRPVT---DLLPLIA-SGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFE 164 (440)
Q Consensus 89 s~W~D~i~R~~~---el~~li~-~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~l~ 164 (440)
|+|||+|+|++. +|+++++ .|++|+||||+||.+|+.+++.|+++|++++..|++++++||.|+++|++.+||+|+
T Consensus 1 s~WlD~i~R~~l~~g~l~~li~~~~~~g~TsNPsi~~~Ai~~~~~y~~~i~~~~~~~~~~~~~~~~l~~~di~~a~d~l~ 80 (338)
T cd00955 1 SLWLDNLSRSFIDNGFLKRLIEEQGVVGVTSNPAIFEKAIAGSAAYDDQIRALKGQGLDAEAIYEALAIEDIQDACDLLA 80 (338)
T ss_pred CCCcccCchhhccccCHHHHHHhCCCceeccCHHHHHHHHhCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Confidence 799999999994 6999975 599999999999999999889999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHH
Q 036665 165 SIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYE 244 (440)
Q Consensus 165 p~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~ 244 (440)
|+|+.++|.+|+||+||||++++|+++||++|++|++.+++||+|||||+||+||+||++|+++||+||+|+|||++||.
T Consensus 81 p~~~~~~g~~G~Vs~EVdP~la~d~~~~i~~A~~L~~~i~~~nv~IKIPaT~~Gi~Ai~~L~~~GI~vn~TliFs~~Qa~ 160 (338)
T cd00955 81 PVYEQTGGNDGYVSLEVSPRLADDTQGTIAEAKRLWKAVGRPNLMIKIPATEAGLPAIEELIAAGISVNVTLIFSLEQYE 160 (338)
T ss_pred HHHhhcCCCCCeEEEEecccccCCHHHHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHHHHHHCCCceeEeeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHH
Q 036665 245 EVIDAYLDGLEAS--GLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDA 322 (440)
Q Consensus 245 a~aqA~lagl~~a--G~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~ 322 (440)
+|++||++|++++ .|.|++++.+||||||||+|+++|+.+.+ ..+..+.|..+|++++++|++|++.|.|+||+.
T Consensus 161 ~aa~A~~~Gl~~~~~~g~~~~~~~sv~S~FVsRiD~~~d~~l~~---~~~~~~~g~~gIa~ak~~Y~~~~~~~~~~~~~~ 237 (338)
T cd00955 161 AVAEAYLRGLERRVEGGGDLSQVASVASFFVSRVDTLIDKKLDA---PEAKALQGKVAIANAKLAYQEYQEKFSGPRWAA 237 (338)
T ss_pred HHHHHHHhhHHHHHhcCCCcccCceEEEEecchhhHhhhccccc---ccccccccCHHHHHHHHHHHHHHHHCCchhhHH
Confidence 9999999999863 25899999999999999999999998865 223457899999999999999999999999999
Q ss_pred HHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHhhHHhHhHhhcCcH
Q 036665 323 LVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDW 402 (440)
Q Consensus 323 l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~~~~~~l~~~~id~ 402 (440)
|+++|+++||+|||||+||||+|++++||.+|+|||+|||+|+.+++++.+||.+..++....++++++++.+...|+|+
T Consensus 238 l~~~ga~~qr~LwASTgvk~~~~~~~~yV~~LiG~dtvnt~P~~t~~a~~~~g~~~~~l~~~~~~a~~~~~~l~~~gid~ 317 (338)
T cd00955 238 LAAAGAKPQRLLWASTGVKNPAYPDVLYVEELIGPDTVNTMPDATLKAFADHGEVRPTLEEGLEEAERVLAELERLGIDL 317 (338)
T ss_pred HHhcCCcccccceecccccCCccCCcccHHhccCCCcccCCHHHHHHHHHhcCCccccCCCchhhHHHhhHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999998889988888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036665 403 NYVGTQLELEGVDSFKKSFDS 423 (440)
Q Consensus 403 ~~~~~~L~~eGi~~F~~~~~~ 423 (440)
+.++++|++|||++|+++|++
T Consensus 318 d~v~~~L~~eGi~~F~~af~~ 338 (338)
T cd00955 318 DAVTEKLLKEGVKKFKDSFEK 338 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999973
No 5
>PRK03903 transaldolase; Provisional
Probab=100.00 E-value=4.6e-69 Score=528.95 Aligned_cols=274 Identities=34% Similarity=0.584 Sum_probs=258.5
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcE
Q 036665 129 AYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNV 208 (440)
Q Consensus 129 ~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~l~p~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv 208 (440)
.|+++|+.| +|++++++||.|+++||++|||+|+|+|++ |.+|+||+||||++++|+++||++|++|++.+++||+
T Consensus 1 ~Y~~~i~~l--~g~~~~~~ye~la~~Di~~a~d~l~p~~~~--g~~G~VS~EV~P~la~d~~~~i~ea~~L~~~~~~~nv 76 (274)
T PRK03903 1 AYKDEIAKL--KGKKAKEIYEELAIKDIKKAADKLLPLYEK--PDDGFISIEIDPFLEDDAAGSIEEGKRLYKTIGRPNV 76 (274)
T ss_pred ChHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhHHHhcC--CCCCeEEEEEccccccCHHHHHHHHHHHHHhcCCCCE
Confidence 499999999 799999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred EEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcC
Q 036665 209 YIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIG 288 (440)
Q Consensus 209 ~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g 288 (440)
|||||+|++|++||++|+++||+||+|+|||++||.+|++||.+|+++ +++++++|+||||||+|+++|+.+...+
T Consensus 77 ~IKIPaT~~Gl~Ai~~L~~~GI~vn~TliFS~~Qa~~~a~A~~~Ga~~----~~~~~~sviS~fVgRiD~~~d~~l~~~~ 152 (274)
T PRK03903 77 MIKVPATKAGYEAMSALMKKGISVNATLIFSPEQAKECAEALNEGLKK----NTKDPKAVISVFVSRFDRLLDPKLAPKN 152 (274)
T ss_pred EEEeCCCHHHHHHHHHHHHCCCcEEEeeecCHHHHHHHHHHHHcCccc----ccccCCceeeeecchHhhhccccccccc
Confidence 999999999999999999999999999999999999999999999855 4577899999999999999998887543
Q ss_pred CccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHH
Q 036665 289 TPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQAL 368 (440)
Q Consensus 289 ~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l 368 (440)
++|+.+|++++++|+.|+ ++|.++||+||||||||||.|+++.|+.+|+|++++||+|++++
T Consensus 153 ------l~~~~gIa~a~~~y~~~~------------~~g~~~~riL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl 214 (274)
T PRK03903 153 ------LQAKSGIMNATKCYNQIE------------QHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTI 214 (274)
T ss_pred ------ccccHHHHHHHHHHHHHH------------HcCCCCcEEEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHH
Confidence 568899999999999987 36888899999999999999999999999999999999999999
Q ss_pred HHHHhCCccccccccchhHHhhHHhHhHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036665 369 QAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 428 (440)
Q Consensus 369 ~al~~~~~~~~~l~~~~~~a~~~~~~l~~~~id~~~~~~~L~~eGi~~F~~~~~~Ll~~l 428 (440)
++|.+||.+..++....+.++.+++.+.+.||||+.++++|++|||++|+++|++|++.|
T Consensus 215 ~a~~~hg~~~~~~~~~~~~~~~f~~~~~~~gid~~~v~~~L~~eg~~~F~~af~~ll~~l 274 (274)
T PRK03903 215 EAFLKDGNTEPKKPLKIEEIEAFFKELKSHNIDLENTYQKLLKDGLEAFKQAFEDILKSL 274 (274)
T ss_pred HHHHhcCCccCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999888888888999999999999999999999999999999999999999754
No 6
>KOG2772 consensus Transaldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-62 Score=476.76 Aligned_cols=324 Identities=32% Similarity=0.456 Sum_probs=277.9
Q ss_pred cccCCCCCCCCccCcHHHHHhhcCccccccccccccccHHHHHhCCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCC
Q 036665 64 CSQSGGNGSSAKRTTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKD 143 (440)
Q Consensus 64 ~~~~~~~~~~~~~~~l~~l~~~~gqs~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~ 143 (440)
||...+++...+++.|++|+ +.| ++++++..++..+.+.++.|+||||+||.+|.. .+.|.++++.++..|++
T Consensus 1 ~s~p~~~~~~~~~ssL~qLk-~~~-----t~vvadtgDf~~i~~~~p~daTtnpSlil~as~-~~~y~~~~~~aveygk~ 73 (337)
T KOG2772|consen 1 MSVPGGKGQAGKRSSLEQLK-ASG-----TVVVADTGDFLAIIEYKPQDATTNPSLILAASK-MPAYAELFDTAVEYGKK 73 (337)
T ss_pred CCCCccccchHHHhhHHHHH-hcc-----CeeecCccchHHHHhcCCCCCccCHHHHHhhhc-cHhHHHHHHHHHHHHHH
Confidence 78888999999999999997 466 788999999999999999999999999999987 68999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhh-----cCCCcEEEEcCCCcch
Q 036665 144 IEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPC 218 (440)
Q Consensus 144 ~~e~y~~L~i~di~~a~d~l~p~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~-----v~r~nv~IKIPaT~eG 218 (440)
....||+.+..+|.++|-+|- ++.++++|||||+||||||++|+++||+.|+.|.++ |+++||+||||+||+|
T Consensus 74 ~~~~~~e~v~~aidr~~v~fg--~dilk~vpGrVStEVdaRLsfDTq~tvekA~~Likly~~~gv~k~rvliKI~sTweg 151 (337)
T KOG2772|consen 74 HGSSYWEQVENAIDRACVLFG--TDILKGVPGRVSTEVDARLSFDTQGTVEKARHLIKLYNEEGVPKERVLIKIASTWEG 151 (337)
T ss_pred hccchHHHHHHHHHHHHHHhC--hhhhhcCCCeeeeeecccccccchhHHHHHHHHHHHHHhcCCChheEEEecccccch
Confidence 888899999999999987775 778999999999999999999999999999999997 5599999999999999
Q ss_pred HHHHHHHHHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchH
Q 036665 219 VPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGK 298 (440)
Q Consensus 219 i~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~ 298 (440)
|+|+++|+.+||+||+||+||..||++|++| | .++||||||||++|.++..+... ..+.++||
T Consensus 152 I~Aar~le~~GIhcnmTllFSfaQAVacAea--------~-------vtliSpFVgRi~dw~~~~t~~ka-~~~~~dpg- 214 (337)
T KOG2772|consen 152 IQAARELEEEGIHCNMTLLFSFAQAVACAEA--------G-------VTLISPFVGRILDWYKANTGQKA-YKAREDPG- 214 (337)
T ss_pred hHHHHHHHhcCceeeeeehHHHHHHHHHHhc--------C-------CeeehhHHHHHHHHHHhccCchh-ccccCCch-
Confidence 9999999999999999999999999999998 7 79999999999999988876411 12335566
Q ss_pred HHHHHHHHHHHHHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCcc-
Q 036665 299 AAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV- 377 (440)
Q Consensus 299 ~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~- 377 (440)
|+.++++|++|++ +||++ .+|.| ||||.. .+.+|+|||.+ |+||.++..+.+.+..
T Consensus 215 --V~sv~~iYnyykK------------fgykt-~Vm~a--sfrn~~-----eik~lag~D~l-tisp~ll~~l~~s~~~~ 271 (337)
T KOG2772|consen 215 --VASVKKIYNYYKK------------FGYKT-LVMAA--SFRNTG-----EIKNLAGVDYL-TISPALLPQLVNSTEDQ 271 (337)
T ss_pred --HHHHHHHHHHHHH------------hhHHH-HHHHH--Hhhchh-----hhhhcccCcee-eecHHHHHHHhhCCCcc
Confidence 5556779999983 58876 78988 577754 68999999999 9999999999876543
Q ss_pred ccccccchhHHhhHH--hHhHhhcCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036665 378 SRTIDLNVSEAEGIY--SALEKLGIDWNY----VGTQLELEGVDSFKKSFDSLLDTLQEKANSLK 436 (440)
Q Consensus 378 ~~~l~~~~~~a~~~~--~~l~~~~id~~~----~~~~L~~eGi~~F~~~~~~Ll~~l~~k~~~l~ 436 (440)
...+..+.....+.. ...++.+|.|.. ++.+|+.|||++|+++++.|+++|++|+..++
T Consensus 272 ~~~l~a~~ak~~~~~k~~y~de~~fr~~lned~ma~eklseGI~~Fa~d~~~L~~ll~~k~~~~~ 336 (337)
T KOG2772|consen 272 PLELSASHAKLKDLEKVSYSDEEGFRWDLNEDAMATEKLSEGIRKFAKDAETLEKLLEKKANTLK 336 (337)
T ss_pred chhhhhhhhhccCcccccccchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 333444443333221 124667788864 58899999999999999999999999998765
No 7
>PRK05269 transaldolase B; Provisional
Probab=100.00 E-value=2.2e-60 Score=477.53 Aligned_cols=303 Identities=25% Similarity=0.314 Sum_probs=251.7
Q ss_pred CcHHHHHhhcCccccccccccccccHHHHHhCCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHH
Q 036665 77 TTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDI 156 (440)
Q Consensus 77 ~~l~~l~~~~gqs~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di 156 (440)
|.|.+|. ++ ..+|+|.- +++.+.+.|++|+||||+||.+|+. ++.|+++|++++..+++.. .+..+|+
T Consensus 3 ~~L~~L~-~~-t~vv~Dtg-----dl~~i~~~~p~g~TtNPsli~ka~~-~~~Y~~~i~~~~~~~~~~~----~~~~~~i 70 (318)
T PRK05269 3 NKLEQLK-QF-TTVVADTG-----DIEAIKKYQPQDATTNPSLILKAAQ-IPEYAPLIDDAVAWAKQQS----GDRAQQI 70 (318)
T ss_pred CHHHHHH-hC-CEEEcCCC-----CHHHHHhcCCCceeeCHHHHHHHhc-CHhHHHHHHHHHHhhcccc----cchHHHH
Confidence 6788995 34 67887654 5666667899999999999999996 7999999999998877653 3467899
Q ss_pred HHHHHHhHHhh--hhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhh-----cCCCcEEEEcCCCcchHHHHHHHHHCC
Q 036665 157 QDACKLFESIY--DETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKEVISQG 229 (440)
Q Consensus 157 ~~a~d~l~p~~--~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~-----v~r~nv~IKIPaT~eGi~Ai~~L~~~G 229 (440)
+.+||.|+|.| +..++++|+||+||||++++|+++||++|++|+++ |+++|||||||+||+||+|+++|+++|
T Consensus 71 ~~a~d~l~v~~g~ei~~~i~G~Vs~EVdp~l~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~G 150 (318)
T PRK05269 71 DDAIDKLAVNFGLEILKLIPGRVSTEVDARLSFDTEATIAKARKLIALYEEAGISKDRILIKIASTWEGIRAAEQLEKEG 150 (318)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHHHHHHHcC
Confidence 99999999999 45889999999999999999999999999999997 789999999999999999999999999
Q ss_pred CceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHH
Q 036665 230 ISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQ 309 (440)
Q Consensus 230 I~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~ 309 (440)
|+||+|+|||+.||.+|++| | ++||||||||||+|+++........ ...++ +|.+++++|+
T Consensus 151 I~vn~TlvFs~~Qa~~aa~A--------G-------a~~ISPfVgRi~d~~~~~~~~~~~~-~~~~~---Gv~~v~~i~~ 211 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEA--------G-------VFLISPFVGRILDWYKKNTGKKEYA-PAEDP---GVVSVTKIYN 211 (318)
T ss_pred CceeEeEecCHHHHHHHHHc--------C-------CCEEEeeccHHHHHhhhcccccccC-cCCCc---HHHHHHHHHH
Confidence 99999999999999999997 8 7999999999999987765432111 11334 4667778999
Q ss_pred HHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHh-CCccccccccchhHH
Q 036665 310 LYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVD-HGAVSRTIDLNVSEA 388 (440)
Q Consensus 310 ~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~-~~~~~~~l~~~~~~a 388 (440)
+|+ ++|+++ +||+| ||||+. ++.+|+|||++ |+||+++++|.+ ++.+.+.++.. ..+
T Consensus 212 ~~k------------~~~~~t-~im~A--Sfrn~~-----~v~~laG~d~v-Ti~p~ll~~l~~~~~~~~~~l~~~-~~~ 269 (318)
T PRK05269 212 YYK------------KHGYKT-VVMGA--SFRNTG-----QILELAGCDRL-TISPALLEELAASEGELERKLSPP-GEA 269 (318)
T ss_pred HHH------------HcCCCc-eEEee--ccCCHH-----HHHHHhCCCeE-ECCHHHHHHHHhcCCCccccCCCc-ccc
Confidence 987 368875 89999 788864 67789999999 999999999985 55566777652 222
Q ss_pred hhHHhHhHhhcCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036665 389 EGIYSALEKLGIDW----NYVGTQLELEGVDSFKKSFDSLLDTLQEKA 432 (440)
Q Consensus 389 ~~~~~~l~~~~id~----~~~~~~L~~eGi~~F~~~~~~Ll~~l~~k~ 432 (440)
......+++..|+| +.++.++++|||++|++++++|++.|+.|+
T Consensus 270 ~~~~~~~~e~~f~~~~~~d~ma~ekl~egi~~F~~~~~~L~~~i~~~~ 317 (318)
T PRK05269 270 KARPVPLTEAEFRWQHNEDAMATEKLAEGIRKFAKDQEKLEKLIAAKL 317 (318)
T ss_pred ccccccCCHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455554555 456999999999999999999999999876
No 8
>PRK12346 transaldolase A; Provisional
Probab=100.00 E-value=7.6e-60 Score=472.11 Aligned_cols=299 Identities=21% Similarity=0.286 Sum_probs=244.9
Q ss_pred CcHHHHHhhcCccccccccccccccHHHHHhCCCCccccChHHHHHHHhCCcchHHHHHHHHHc----CCChHHHHHHHH
Q 036665 77 TTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQS----GKDIEAAYWELV 152 (440)
Q Consensus 77 ~~l~~l~~~~gqs~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~----g~~~~e~y~~L~ 152 (440)
|.|.+|. .-+.+|+|.- +++.+-++|++|+||||+||.+|+. +|.|+++|++.+.. |.+.+
T Consensus 2 ~~L~~Lk--~~t~vv~Dtg-----d~~~i~~~~p~daTtNPsli~~a~~-~~~y~~li~~ai~~~~~~~~~~~------- 66 (316)
T PRK12346 2 NQLDGIK--QFTTVVADSG-----DIESIRHYHPQDATTNPSLLLKAAG-LPQYQHLIDDAIAWGKKQGGTQE------- 66 (316)
T ss_pred ChHHHhh--CCeEEecCCC-----CHHHHHhcCCCccccCHHHHHHHhc-ChhhHHHHHHHHHHHHhcCCChH-------
Confidence 4678884 4567888654 4655446899999999999999999 69999998887753 43332
Q ss_pred HHHHHHHHHHhHHhh--hhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhh-----cCCCcEEEEcCCCcchHHHHHHH
Q 036665 153 IKDIQDACKLFESIY--DETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKEV 225 (440)
Q Consensus 153 i~di~~a~d~l~p~~--~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~-----v~r~nv~IKIPaT~eGi~Ai~~L 225 (440)
++++.+||.|+|.| +.+++++|+||+||||++++|+++||++|++|+++ ++++|+|||||+||+||+|+++|
T Consensus 67 -~~i~~a~D~l~v~~g~ei~~~v~G~Vs~EVdp~la~d~e~~i~~A~~l~~l~~~~gi~~~~i~IKIPaT~eGi~A~~~L 145 (316)
T PRK12346 67 -QQVVAACDKLAVNFGAEILKSVPGRVSTEVDARLSFDREKSIEKARHLVDLYQQQGIDKSRILIKLASTWEGIRAAEEL 145 (316)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCCcEEEEEccccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHHHHH
Confidence 57889999999999 56999999999999999999999999999999997 88999999999999999999999
Q ss_pred HHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHH
Q 036665 226 ISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAA 305 (440)
Q Consensus 226 ~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~ 305 (440)
+++||+||+|+|||+.||.+|++| | +.||||||||||+|+++...... ..+..++|+.. ++
T Consensus 146 ~~~GI~~n~TliFS~~Qa~~aa~A--------G-------a~~ISPfVgRi~d~~~~~~~~~~-~~~~~~~Gv~~---v~ 206 (316)
T PRK12346 146 EKEGINCNLTLLFSFAQARACAEA--------G-------VFLISPFVGRIYDWYQARKPMDP-YVVEEDPGVKS---VR 206 (316)
T ss_pred HHCCCceeEEEecCHHHHHHHHHc--------C-------CCEEEecccHHHHhhhhcccccc-ccccCCChHHH---HH
Confidence 999999999999999999999997 8 89999999999999877543321 12235667555 45
Q ss_pred HHHHHHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCc-cccccccc
Q 036665 306 LAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGA-VSRTIDLN 384 (440)
Q Consensus 306 ~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~-~~~~l~~~ 384 (440)
++|++|+ ++|+++ +||+| ||||+. ++.+|+|||.+ |+||+++++|.+++. +.+.++..
T Consensus 207 ~i~~~~k------------~~~~~T-~Vm~A--SfRn~~-----qi~alaG~d~l-Ti~p~ll~~L~~~~~~~~~~l~~~ 265 (316)
T PRK12346 207 NIYDYYK------------QHRYET-IVMGA--SFRRTE-----QILALAGCDRL-TISPNLLKELQESESPVERKLIPS 265 (316)
T ss_pred HHHHHHH------------HcCCCc-EEEec--ccCCHH-----HHHHHhCCCEE-eCCHHHHHHHHhcCCCcccccChh
Confidence 6888886 368875 89999 799876 56699999999 999999999987654 35556543
Q ss_pred hhHHhhHHhHhHhhcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036665 385 VSEAEGIYSALEKLGIDWN----YVGTQLELEGVDSFKKSFDSLLDTLQEKA 432 (440)
Q Consensus 385 ~~~a~~~~~~l~~~~id~~----~~~~~L~~eGi~~F~~~~~~Ll~~l~~k~ 432 (440)
...... ...+++..|+|. .++.++++|||++|++++++|++.|++|+
T Consensus 266 ~~~~~~-~~~~~e~~fr~~~~~d~mA~ekl~eGIr~F~~d~~~Le~~i~~~~ 316 (316)
T PRK12346 266 SQTFPR-PAPMSEAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL 316 (316)
T ss_pred hhcccC-CCCCCHHHHHHHhCcCHhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 221111 234566677885 46889999999999999999999998763
No 9
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=100.00 E-value=7e-60 Score=468.30 Aligned_cols=285 Identities=41% Similarity=0.616 Sum_probs=249.9
Q ss_pred ccccccccccccHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhHHhhh
Q 036665 90 PWYDNLCRPVTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168 (440)
Q Consensus 90 ~W~D~i~R~~~el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~l~p~~~ 168 (440)
+|+|.+. +.+++++++.| ++|+||||+|+.+++.+...|++.|+++...|+...++|+.+++++++++|+.+
T Consensus 1 i~~Dsad--~~~i~~~~~~~~~~GvTTNPsii~~a~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~l----- 73 (287)
T PF00923_consen 1 IWLDSAD--RDEIKELLPNGGIDGVTTNPSIIAKALSGSEAYDEAIKELAKQGKSWEEIYDKLAVEDGREALDLL----- 73 (287)
T ss_dssp EEEESSS--HHHHHHHHHTTTESEEEE-HHHHHHHHTGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHCCH-----
T ss_pred CCccCCC--HHHHHHHhhccccCCCccCHHHHHHHHcccccHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc-----
Confidence 6999996 57889999975 899999999999999866799999999999998899999999999999999987
Q ss_pred hcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHH
Q 036665 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVID 248 (440)
Q Consensus 169 ~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aq 248 (440)
|.+|+||+||+|++++|+++|+++|++|+++++|+|||||||+|++||+|+++|.++||+||+|+|||++||.+|++
T Consensus 74 ---g~~G~vsvqv~p~~~~d~e~~i~~A~~l~~~~~r~~v~IKIPaT~~Gi~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~ 150 (287)
T PF00923_consen 74 ---GKDGPVSVQVDPRLAYDAEEMIEEARRLHALFERPNVVIKIPATEEGIKAIKELEAEGIPVNATLVFSVEQAIAAAQ 150 (287)
T ss_dssp ---TSSSEEEEE-SGGGTTSHHHHHHHHHHHHHHHHGGTEEEEEESSHHHHHHHHHHHHTT-EEEEEEE-SHHHHHHHHH
T ss_pred ---CCCceEEEecCCccccCHHHHHHHHHHHHHhccccCeeEECCCCHHHHHHHHHHhhCCceEEEEecccHHHHHHHHh
Confidence 67999999999999999999999999999999889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchH-HHHHHHHHHHHHHHhccCCcchHHHHhcC
Q 036665 249 AYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGK-AAVAQAALAYQLYQKKFSGPRWDALVKKG 327 (440)
Q Consensus 249 A~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~-~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G 327 (440)
| | ++||||||||+|+++ +.+... .+..+. .+++.++.+|++|++ +|
T Consensus 151 A--------G-------a~~isp~vgRld~~~-~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~------------~~ 197 (287)
T PF00923_consen 151 A--------G-------ASYISPYVGRLDDWG-KRLQGE-----DALKGEHDGVALAKEIYQYYRK------------YG 197 (287)
T ss_dssp T--------T--------SEEEEBHHHHHHHH-HHHSCC-----HHCGGGSHHHHHHHHHHHHHHH------------HT
T ss_pred c--------c-------cceEeeeHHHHHHHh-hhhccc-----ccccccccHHHHHHHHHHHHHH------------hC
Confidence 7 7 899999999999998 444322 133343 557777778888763 46
Q ss_pred CccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHhhHHhHhHhhcCcHHHHHH
Q 036665 328 AKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGT 407 (440)
Q Consensus 328 ~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~~~~~~l~~~~id~~~~~~ 407 (440)
++ +++|+| |+|++ .|+.+++|||+| |+||+++++|.+|+.+..+++. ++++.+++.+.+.++|++.+++
T Consensus 198 ~~-t~v~~a--s~r~~-----~~v~~l~G~d~v-Tip~~~l~~l~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 266 (287)
T PF00923_consen 198 YK-TKVLAA--SFRNV-----QQVLALAGADIV-TIPPKVLEALLEHPLTEETLDK--EEAEAVLEALFELGIDLDPVAE 266 (287)
T ss_dssp ES-SEEEEB--SSSSH-----HHHHHTTTSSEE-EEEHHHHHHHHHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cceecc--CcCCH-----HHHHHHHCCCeE-ECCHHHHHHHHhCCChHhhhch--hhhhhhhHHHHHhCCChhHHHH
Confidence 64 589999 67775 567799999999 9999999999999998877877 7777788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036665 408 QLELEGVDSFKKSFDSLLDTL 428 (440)
Q Consensus 408 ~L~~eGi~~F~~~~~~Ll~~l 428 (440)
+|+.|||++|+++|++|++.|
T Consensus 267 ~l~~~gl~~f~~~~~~l~~~~ 287 (287)
T PF00923_consen 267 ELLAEGLEKFADDWDKLLASI 287 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999875
No 10
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=100.00 E-value=3.7e-59 Score=467.64 Aligned_cols=303 Identities=24% Similarity=0.293 Sum_probs=245.1
Q ss_pred CcHHHHHhhcCccccccccccccccHHHHHhCCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCCh-HHHHHHHHHHH
Q 036665 77 TTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDI-EAAYWELVIKD 155 (440)
Q Consensus 77 ~~l~~l~~~~gqs~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~-~e~y~~L~i~d 155 (440)
|.|.+|. .-+.+|+|.- +++.+-+.|++|+||||+||.+|+ ++|.|+++|++++..++.. ... .+|
T Consensus 1 ~~L~~L~--~~t~vv~Dtg-----d~~~I~~~~p~~aTtNPsi~~~A~-~~~~Y~~~i~~~~~~~~~~~~~~-----~~~ 67 (317)
T TIGR00874 1 NQLDQLK--QFTVVVADTG-----DIEAIKKYQPQDATTNPSLILAAA-QLPKYAELIDEAVAWGKKQGKDD-----AQQ 67 (317)
T ss_pred ChHHHhh--cCeEEEeCCC-----CHHHHHhCCCCccccCHHHHHHHh-CChHHHHHHHHHHHHhhhcCCCh-----HHH
Confidence 4577884 4478898754 566333579999999999999996 5899999999998665432 222 268
Q ss_pred HHHHHHHhHHhhh--hcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhh-----cCCCcEEEEcCCCcchHHHHHHHHHC
Q 036665 156 IQDACKLFESIYD--ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKEVISQ 228 (440)
Q Consensus 156 i~~a~d~l~p~~~--~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~-----v~r~nv~IKIPaT~eGi~Ai~~L~~~ 228 (440)
++.+||.|+|.|+ .+++++|+||+||||++++|+++||++|++|+++ |++||+|||||+||+||+|+++|+++
T Consensus 68 i~~a~D~l~v~~g~~i~~~i~G~VS~EVdprls~d~~~~i~~A~~l~~l~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~ 147 (317)
T TIGR00874 68 VENALDKLAVNFGLEILKIVPGRVSTEVDARLSFDTEATVEKARHLIKLYEDAGVDKKRILIKIASTWEGIRAAEELEKE 147 (317)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHHHHHHHC
Confidence 9999999999995 5889999999999999999999999999999998 88999999999999999999999999
Q ss_pred CCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHH
Q 036665 229 GISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAY 308 (440)
Q Consensus 229 GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y 308 (440)
||+||+|+|||+.||.+|++| | +.|||||||||++|+++...... .....++|+ ..++++|
T Consensus 148 GI~vN~TliFS~~Qa~aaa~A--------G-------a~~ISPFVgRi~dw~~~~~g~~~-~~~~~d~Gv---~~v~~i~ 208 (317)
T TIGR00874 148 GIHCNLTLLFSFVQAIACAEA--------K-------VTLISPFVGRILDWYKAATGKKE-YSIEEDPGV---ASVKKIY 208 (317)
T ss_pred CCceeeeeecCHHHHHHHHHc--------C-------CCEEEeecchHhHhhhhccCccc-cccccCchH---HHHHHHH
Confidence 999999999999999999998 8 79999999999998776542111 112245675 4556688
Q ss_pred HHHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCc-cccccccchhH
Q 036665 309 QLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGA-VSRTIDLNVSE 387 (440)
Q Consensus 309 ~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~-~~~~l~~~~~~ 387 (440)
++|+ ++|+++ +||+| ||||+. ++.+|+|||.+ |+||+++++|..++. +.+.++.....
T Consensus 209 ~~~k------------~~g~~T-~Im~A--SfRn~~-----qv~~laG~d~~-Ti~p~ll~~L~~~~~~~~~~l~~~~~~ 267 (317)
T TIGR00874 209 NYYK------------KHGYPT-EVMGA--SFRNKE-----EILALAGCDRL-TISPALLDELKESTGPVERKLDPESAK 267 (317)
T ss_pred HHHH------------HcCCCc-EEEee--ccCCHH-----HHHHHHCCCeE-eCCHHHHHHHHhCCCCcCccCCccccc
Confidence 8886 468975 89999 799875 57779999999 999999999987654 45666554433
Q ss_pred HhhHH-hHhHhhcCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036665 388 AEGIY-SALEKLGIDWNY----VGTQLELEGVDSFKKSFDSLLDTLQEKA 432 (440)
Q Consensus 388 a~~~~-~~l~~~~id~~~----~~~~L~~eGi~~F~~~~~~Ll~~l~~k~ 432 (440)
..... ..+++..|+|.. ++.+++.|||++|++++.+|++.|++|+
T Consensus 268 ~~~~~~~~~~e~~fr~~~~~d~ma~ekl~~gir~F~~d~~~Le~~i~~~~ 317 (317)
T TIGR00874 268 KVDKQPIILDESEFRFLHNEDAMATEKLAEGIRKFAADQEKLEKLLEEKL 317 (317)
T ss_pred cccccCCCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 22211 234566667765 4889999999999999999999998763
No 11
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=100.00 E-value=6.1e-57 Score=451.45 Aligned_cols=300 Identities=26% Similarity=0.301 Sum_probs=239.1
Q ss_pred CcHHHHHhhcCccccccccccccccHHHHHhCCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHH
Q 036665 77 TTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDI 156 (440)
Q Consensus 77 ~~l~~l~~~~gqs~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di 156 (440)
|.|.+|. ..+.+|+|.. +++.+-+.|+.|+||||+||.+|+. +|.|+++|++++..++.... ...+++
T Consensus 1 ~~L~~L~--~~t~vv~Dtg-----dl~~I~~~~p~gaTtNPsli~ka~~-~~~y~~~i~~~~~~~~~~~~----~~~~~~ 68 (313)
T cd00957 1 NQLDQLK--KFTTIVADTG-----DFEAIKKFKPQDATTNPSLILAAAK-LPEYNKLVDEAIAYAKKKGG----SDEDQI 68 (313)
T ss_pred ChHHHhh--cCcEEEecCC-----CHHHHHhcCCCeeeeCHHHHHHHhc-CHHHHHHHHHHHHHhhhcCC----CHHHHH
Confidence 3577784 4678888765 4555446799999999999999988 59999999999765432111 012466
Q ss_pred HHHHHHhHHhhhh--cCCCCccEEEEecCCCCCCHHHHHHHHHHHHhh-----cCCCcEEEEcCCCcchHHHHHHHHHCC
Q 036665 157 QDACKLFESIYDE--TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKEVISQG 229 (440)
Q Consensus 157 ~~a~d~l~p~~~~--~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~-----v~r~nv~IKIPaT~eGi~Ai~~L~~~G 229 (440)
..++|.+.+.|++ .++++|+||+||||++++|+++||++|++|+++ ++++|+|||||+||+||+|+++|+++|
T Consensus 69 ~~~~d~l~v~~~~~i~~~i~G~Vs~EVdp~la~d~~~~i~~A~~l~~~~~~~gi~~~~i~IKIPaT~eGi~A~~~L~~~G 148 (313)
T cd00957 69 SNALDKLLVNFGTEILKLIPGRVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKIAATWEGIQAAKQLEKEG 148 (313)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHHHHHHHCC
Confidence 7789999988855 778999999999999999999999999999997 789999999999999999999999999
Q ss_pred CceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHH
Q 036665 230 ISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQ 309 (440)
Q Consensus 230 I~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~ 309 (440)
|+||+|+|||+.||.+|++| | ++||||||||||+|+.+..... ..+...++|+.. ++++|+
T Consensus 149 I~vn~TlvFS~~Qa~~aa~A--------G-------a~~ISPfVgRi~d~~~~~~~~~-~~~~~~d~Gv~~---v~~i~~ 209 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEA--------G-------VTLISPFVGRILDWYKKHSGDK-AYTAEEDPGVAS---VKKIYN 209 (313)
T ss_pred CceeeeeecCHHHHHHHHHc--------C-------CCEEEeecchHHHhhhhccccc-cCCccCCcHHHH---HHHHHH
Confidence 99999999999999999998 8 7999999999999866543211 122234567544 566888
Q ss_pred HHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCcc-ccccccchhHH
Q 036665 310 LYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEA 388 (440)
Q Consensus 310 ~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~-~~~l~~~~~~a 388 (440)
+|+ ++|+++ +||+| ||||+. ++.+|+|||.+ |+||+++++|.+|+.. .+.++......
T Consensus 210 ~~~------------~~~~~T-~vmaA--SfRn~~-----~v~~laG~d~~-Ti~p~ll~~L~~~~~~~~~~l~~~~~~~ 268 (313)
T cd00957 210 YYK------------KFGYKT-KVMGA--SFRNIG-----QILALAGCDYL-TISPALLEELKNSTAKVERKLDPAASKA 268 (313)
T ss_pred HHH------------HcCCCc-EEEec--ccCCHH-----HHHHHhCCCeE-EcCHHHHHHHHhCCCccccccCcccccc
Confidence 886 468875 89999 799875 46679999999 9999999999988764 56665443322
Q ss_pred hhHH-hHhHhhcCcHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 036665 389 EGIY-SALEKLGIDWNY----VGTQLELEGVDSFKKSFDSLLDTL 428 (440)
Q Consensus 389 ~~~~-~~l~~~~id~~~----~~~~L~~eGi~~F~~~~~~Ll~~l 428 (440)
.... ..+++..|+|.. ++.+++.|||+.|++++++|++.|
T Consensus 269 ~~~~~~~~~e~~fr~~~~~d~ma~ekl~~gir~F~~d~~~L~~~~ 313 (313)
T cd00957 269 LDIHPNFLDESAFRWALNEDAMAVEKLSEGIRGFAKDAVKLEKLI 313 (313)
T ss_pred cccccccCCHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 2222 234666677765 488999999999999999999764
No 12
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=100.00 E-value=6.7e-57 Score=463.31 Aligned_cols=312 Identities=23% Similarity=0.278 Sum_probs=247.9
Q ss_pred cCcHHHHHhhcCccccccccccccccHHHHHhCCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHH
Q 036665 76 RTTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKD 155 (440)
Q Consensus 76 ~~~l~~l~~~~gqs~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~d 155 (440)
.|.|.+|. ++ ..+|+|. .++..+-++|++|+||||+||.+++. +|.|+++|.+++..++.. .++.+..+|
T Consensus 3 ~~~L~~L~-~~-t~vv~Dt-----gd~~~i~~~~p~~aTtNPsli~~a~~-~~~y~~~i~~~~~~~~~~--~~~~~~~~~ 72 (391)
T PRK12309 3 ASLLEQLR-QM-TVVVADT-----GDIQAIEKFTPRDATTNPSLITAAAQ-MPQYQSIVDETLRQARKE--LGSDAPVED 72 (391)
T ss_pred cCHHHHHH-cC-cEEecCC-----CCHHHHHhcCCCccccCHHHHHHHhC-CHHHHHHHHHHHHHhhhc--cccCCCHHH
Confidence 47899995 45 4667764 45666556899999999999998885 799999999998765421 111112223
Q ss_pred -HHHHHHHhHHhhhh--cCCCCccEEEEecCCCCCCHHHHHHHHHHHHhh-----cCCCcEEEEcCCCcchHHHHHHHHH
Q 036665 156 -IQDACKLFESIYDE--TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKEVIS 227 (440)
Q Consensus 156 -i~~a~d~l~p~~~~--~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~-----v~r~nv~IKIPaT~eGi~Ai~~L~~ 227 (440)
+..+||.|.|.|+. .+.++|+||+||||++++|+++||++|++|+++ |+++|+|||||+||+||+|+++|++
T Consensus 73 ~~~~a~d~l~v~~g~~i~~~i~G~Vs~EVdprl~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~ 152 (391)
T PRK12309 73 VVALAFDRLAVAFGLKILKIVPGRVSTEVDARLSYDTEATIAKARKLISLYEDAGISRDRVLIKIASTWEGIKAAEVLEK 152 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCCCHHHHHHHHHHHH
Confidence 34589999999976 888999999999999999999999999999996 7789999999999999999999999
Q ss_pred CCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHH
Q 036665 228 QGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALA 307 (440)
Q Consensus 228 ~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~ 307 (440)
+||+||+|+|||+.||.+|++| | +.|||||||||++|+++...... .+...++|+.. ++.+
T Consensus 153 ~GI~~n~TlvFS~~QA~aaaeA--------G-------a~~ISPfVgRi~dw~~~~~g~~~-~~~~~dpGv~~---v~~i 213 (391)
T PRK12309 153 EGIHCNLTLLFGFHQAIACAEA--------G-------VTLISPFVGRILDWYKKETGRDS-YPGAEDPGVQS---VTQI 213 (391)
T ss_pred CCCceeeeeecCHHHHHHHHHc--------C-------CCEEEeecchhhhhhhhccCCCc-cccccchHHHH---HHHH
Confidence 9999999999999999999997 8 79999999999998877543221 12335677554 5668
Q ss_pred HHHHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCc-cccccccchh
Q 036665 308 YQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGA-VSRTIDLNVS 386 (440)
Q Consensus 308 y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~-~~~~l~~~~~ 386 (440)
|++|+ ++|+++ +|||| ||||+. ++.+|+|||.+ |+||+++++|.+++. +.+.+++...
T Consensus 214 ~~~~~------------~~~~~T-~Im~A--SfRn~~-----~v~~laG~d~~-Ti~p~ll~~L~~~~~~~~~~l~~~~~ 272 (391)
T PRK12309 214 YNYYK------------KFGYKT-EVMGA--SFRNIG-----EIIELAGCDLL-TISPKLLEQLRSTEAELPRKLDPANA 272 (391)
T ss_pred HHHHH------------hcCCCc-EEEec--ccCCHH-----HHHHHHCCCee-eCCHHHHHHHHhcCCCcCcccChhhc
Confidence 88886 468875 89999 788875 57779999999 999999999987654 3444443222
Q ss_pred HHhhH-HhHhHhhcCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036665 387 EAEGI-YSALEKLGIDWNYV----GTQLELEGVDSFKKSFDSLLDTLQEKANSLKL 437 (440)
Q Consensus 387 ~a~~~-~~~l~~~~id~~~~----~~~L~~eGi~~F~~~~~~Ll~~l~~k~~~l~~ 437 (440)
..... ...+++..++|..+ +.++++|||++|++++.+|++.|++|+..+.+
T Consensus 273 ~~~~~~~~~~~e~~f~~~~~~~~ma~ekl~egi~~F~~d~~~L~~~i~~~~~~~~~ 328 (391)
T PRK12309 273 AGMEIEKIHMDRATFDKMHAEDRMASEKLDEGIKGFSKALETLEKLLAHRLARLEG 328 (391)
T ss_pred cccccccCCCCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11111 12356677888764 88999999999999999999999999986544
No 13
>PTZ00411 transaldolase-like protein; Provisional
Probab=100.00 E-value=2.6e-56 Score=449.63 Aligned_cols=309 Identities=22% Similarity=0.290 Sum_probs=247.5
Q ss_pred CcHHHHHhhcCccccccccccccccHHHHHhCCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCC-hHHHHHHHHHH-
Q 036665 77 TTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKD-IEAAYWELVIK- 154 (440)
Q Consensus 77 ~~l~~l~~~~gqs~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~-~~e~y~~L~i~- 154 (440)
|.|.+|. .-+.+-. |..+++.+-.+++.++||||||+.+|+. +|.|+++|.+.+..++. ..++|+.|+++
T Consensus 3 ~~L~~L~--~~t~vv~-----Dt~d~~~i~~~~p~daTtNPslil~a~~-~~~y~~li~~a~~~~~~~~~~~~~~l~~~~ 74 (333)
T PTZ00411 3 NQLEALK--EHTTVVA-----DTGDFSLLKKFQPEDATTNPSLVLAAAQ-MPEYAHLIDDAIKYAKANVSRLRDPLLSDE 74 (333)
T ss_pred CHHHHhh--CCeEEec-----CCCCHHHHHhcCCCCCCCCHHHHHHHhc-ChHHHHHHHHHHHHHhhccccccchhcccc
Confidence 4566664 2223333 3457777777899999999999999966 79999999999988753 35567666655
Q ss_pred ----HHHHHHHHhHHhhh--hcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhh-----cCCCcEEEEcCCCcchHHHHH
Q 036665 155 ----DIQDACKLFESIYD--ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIK 223 (440)
Q Consensus 155 ----di~~a~d~l~p~~~--~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~-----v~r~nv~IKIPaT~eGi~Ai~ 223 (440)
++..+||.|.|.|+ ..+.++|+||+||||++++|+++|+++|++|+++ ++++|||||||+||+||+|++
T Consensus 75 ~~~~~~~~a~d~l~v~~g~~i~~~i~G~VS~EVd~~ls~d~e~~i~~A~~l~~l~~~~gi~~~rilIKIPaT~eGi~Aa~ 154 (333)
T PTZ00411 75 EKEELVELVVDKLTVNFGVEILKIVPGRVSTEVDARLSFDKQAMVDKARKIIKMYEEAGISKDRILIKLASTWEGIQAAK 154 (333)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccccccCHHHHHHHHHHHHHhhhhhcCCCCcEEEEeCCCHHHHHHHH
Confidence 78899999999995 4888999999999999999999999999999997 678999999999999999999
Q ss_pred HHHHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHH
Q 036665 224 EVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQ 303 (440)
Q Consensus 224 ~L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~ 303 (440)
+|+++||+||+|+|||+.||.+|++| | +.|||||||||++|+.+.-.... ..+..++|+. .
T Consensus 155 ~L~~eGI~~N~TlvFS~~QA~aaaeA--------G-------a~~ISPfVGRi~d~~~~~~~~~~-~~~~~~~Gv~---~ 215 (333)
T PTZ00411 155 ALEKEGIHCNLTLLFSFAQAVACAQA--------G-------VTLISPFVGRILDWYKKPEKAES-YVGAQDPGVI---S 215 (333)
T ss_pred HHHHCCCceeEeEecCHHHHHHHHHc--------C-------CCEEEeecchHHHhccccccccc-ccccCCchHH---H
Confidence 99999999999999999999999997 8 79999999999887654322111 1233566755 4
Q ss_pred HHHHHHHHHhccCCcchHHHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCC-c-ccccc
Q 036665 304 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHG-A-VSRTI 381 (440)
Q Consensus 304 a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~-~-~~~~l 381 (440)
++++|++|+ ++|+++ +||+| ||||+. ++.+|+|||.+ |+||+++++|.+|+ . +.+.+
T Consensus 216 v~~i~~~~k------------~~g~~T-~Im~A--SfRn~~-----qi~~laG~D~l-Ti~p~ll~~L~~~~~~~~~~~l 274 (333)
T PTZ00411 216 VTKIYNYYK------------KHGYKT-IVMGA--SFRNTG-----EILELAGCDKL-TISPKLLEELANTEDGPVERKL 274 (333)
T ss_pred HHHHHHHHH------------HcCCCe-EEEec--ccCCHH-----HHHHHHCCCEE-eCCHHHHHHHHhCCCcccCccc
Confidence 566888886 468975 89999 799976 57779999999 99999999999887 4 34555
Q ss_pred ccchhHHhhH-HhHhHhhcCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036665 382 DLNVSEAEGI-YSALEKLGIDWNY----VGTQLELEGVDSFKKSFDSLLDTLQEKAN 433 (440)
Q Consensus 382 ~~~~~~a~~~-~~~l~~~~id~~~----~~~~L~~eGi~~F~~~~~~Ll~~l~~k~~ 433 (440)
+......... ...+++..|+|.. ++.++++|||++|++++.+|++.|+.++.
T Consensus 275 ~~~~~~~~~~~~~~~~e~~fr~~~~~d~ma~ekl~~gir~F~~d~~~Le~~i~~~~~ 331 (333)
T PTZ00411 275 DPEKLTEDTEKLPELTEKEFRWELNEDAMATEKLAEGIRNFAKDLEKLENVIRAKLT 331 (333)
T ss_pred CcccccccccccCCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4432221111 1234566677764 48899999999999999999999998874
No 14
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=100.00 E-value=3.1e-56 Score=435.37 Aligned_cols=241 Identities=73% Similarity=1.086 Sum_probs=212.5
Q ss_pred cccccccccccccHHHHHhCCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhHHhhh
Q 036665 89 SPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168 (440)
Q Consensus 89 s~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~l~p~~~ 168 (440)
|+|+|++.|+..++..++ .|++|+||||+|+.+++.....|+..++.+...|.+.+++||+|..+|++.+|+++.|+|+
T Consensus 1 s~~lDt~d~~~i~~~~~~-~~~~GvTTNPsiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 79 (252)
T cd00439 1 SPWYDTLDRPATDLLPLI-RGVRGVTTNPSIIQAAISTSNAYNDQFRTLVESGKDIESAYWELVVKDIQDACKLFEPIYD 79 (252)
T ss_pred CEEeeCCCHHHHHHhhcc-CCCCeeccCHHHHHHHhcCchhhHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999987544322223 4799999999999999997788889999999888888899999999999999999999999
Q ss_pred hcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHH
Q 036665 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVID 248 (440)
Q Consensus 169 ~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aq 248 (440)
..+ .+|+||+||+|++++|+++|+++|++|+++++++|+|||||+|++|++|+++|+++||+||+|+|||++||.+|++
T Consensus 80 ~~~-~~G~Vs~ev~~~~~~d~~~mi~~A~~l~~~~~~~nv~IKIPaT~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~ 158 (252)
T cd00439 80 QTE-ADGRVSVEVSARLADDTQGMVEAAKYLSKVVNRRNIYIKIPATAEGIPAIKDLIAAGISVNVTLIFSIAQYEAVAD 158 (252)
T ss_pred hhC-CCCeEEEEEeccccCCHHHHHHHHHHHHHhcCcccEEEEeCCCHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHH
Confidence 876 7999999999999999999999999999999889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 036665 249 AYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGA 328 (440)
Q Consensus 249 A~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~ 328 (440)
| | ++||||||||+|+++++++++.+. +..|..+++.++.+|+.|++ +|+
T Consensus 159 A--------g-------a~~ispfvgRid~~~~~~~~~~~~----d~~~~~gi~~~~~~~~~~~~------------~~~ 207 (252)
T cd00439 159 A--------G-------TSVASPFVSRIDTLMDKMLEQIGL----DLRGKAGVAQVTLAYKLYKQ------------KFK 207 (252)
T ss_pred c--------C-------CCEEEEeccHHHHHhhhhcccccc----ccccCcHHHHHHHHHHHHHH------------hCC
Confidence 7 7 899999999999999988886553 23344567777788888763 466
Q ss_pred ccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHH
Q 036665 329 KKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAF 371 (440)
Q Consensus 329 ~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al 371 (440)
+ +|+||| |+||+ .++..++|||+| |+||+++.+|
T Consensus 208 ~-tkiL~A--S~r~~-----~~v~~l~G~d~v-T~~p~v~~~l 241 (252)
T cd00439 208 K-QRVLWA--SFSDT-----LYVAPLIGCDTV-TTMPDQALEA 241 (252)
T ss_pred C-CeEEEE--eeCCH-----HHHHHhhCCCee-ecCHHHHHHH
Confidence 5 699999 67765 578889999999 9999999998
No 15
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-54 Score=417.32 Aligned_cols=232 Identities=34% Similarity=0.515 Sum_probs=197.9
Q ss_pred Cccccccccccccc---cHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Q 036665 87 GQSPWYDNLCRPVT---DLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKL 162 (440)
Q Consensus 87 gqs~W~D~i~R~~~---el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~ 162 (440)
+++.| +.+.+|.. +++++.+.| ++|||||||||.|+..+ + |+.
T Consensus 3 ~~~~~-~~~~~Dt~d~~eikk~~~~g~v~GvTTNPSli~ka~~~--------------~------------------~~~ 49 (239)
T COG0176 3 GLSQW-MELFLDTADIEEIKKLLPIGPVDGVTTNPSLILKAGAK--------------P------------------RDA 49 (239)
T ss_pred hhhhh-HhheecccCHHHHHHhhhcCCcCCcCCCHHHHHhhccc--------------C------------------ccH
Confidence 56789 99988884 678888888 89999999999998653 1 222
Q ss_pred hHHhhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHH
Q 036665 163 FESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLAR 242 (440)
Q Consensus 163 l~p~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Q 242 (440)
+.+.++..+.++|+| .|++|++++|+|+|+++|++|+++++++|||||||+||+||+|++.|+++||+||+|||||+.|
T Consensus 50 ~~~~~ei~~~v~G~v-~e~~~~ls~d~e~mi~eA~~L~~~~~~~~i~IKIP~T~eGl~Ai~~L~~eGI~~NvTLiFS~~Q 128 (239)
T COG0176 50 VEFGKEILKIVPGRV-TEVDEVLSFDAEAMIEEARRLAKLIDNVGIVIKIPATWEGLKAIKALEAEGIKTNVTLIFSAAQ 128 (239)
T ss_pred HHHHHHHHhcCCCCC-eEeeeeecccHHHHHHHHHHHHHhcCcCCeEEEeCCCHHHHHHHHHHHHCCCeeeEEEEecHHH
Confidence 333344445689999 9999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHH
Q 036665 243 YEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDA 322 (440)
Q Consensus 243 a~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~ 322 (440)
+.+|+.| | ++|+||||||||++ ..+|..+|.+++++|++|+.
T Consensus 129 Al~aa~a--------g-------a~~iSpFvgRi~D~--------------~~d~~~~I~~~~~iy~~y~~--------- 170 (239)
T COG0176 129 ALLAAEA--------G-------ATYISPFVGRIDDW--------------GIDGMLGIAEAREIYDYYKQ--------- 170 (239)
T ss_pred HHHHHHh--------C-------CeEEEeecchHHhh--------------ccCchHHHHHHHHHHHHhcc---------
Confidence 7777666 8 89999999999887 34566789999999999973
Q ss_pred HHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHhhHHhHhHhhcCcH
Q 036665 323 LVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDW 402 (440)
Q Consensus 323 l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~~~~~~l~~~~id~ 402 (440)
.|+ +++|| +++++++.|+.+|+|||.+ |+||+++++|.+|+.
T Consensus 171 ---~~~---~t~va-----s~~~~~~~~~~~l~G~d~~-Tip~~~l~~l~~~~~-------------------------- 212 (239)
T COG0176 171 ---HGA---KTLVA-----SARFPNHVYIAALAGADVL-TIPPDLLKQLLKHGG-------------------------- 212 (239)
T ss_pred ---ccc---eEEEe-----cCccHHHHHHHHHhCCCcc-cCCHHHHHHHHhccc--------------------------
Confidence 233 45666 4556677999999999976 999999999999975
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036665 403 NYVGTQLELEGVDSFKKSFDSLLDTLQ 429 (440)
Q Consensus 403 ~~~~~~L~~eGi~~F~~~~~~Ll~~l~ 429 (440)
.++..|++|||++|.+||++|+..+.
T Consensus 213 -~~~~~l~~eGI~~F~~D~~~l~~~~~ 238 (239)
T COG0176 213 -AMAVPLLDEGIRKFAKDWEKLLKSLS 238 (239)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHhhc
Confidence 67889999999999999999998653
No 16
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=100.00 E-value=1.1e-45 Score=353.04 Aligned_cols=208 Identities=29% Similarity=0.433 Sum_probs=174.3
Q ss_pred ccccccccccccHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhHHhhh
Q 036665 90 PWYDNLCRPVTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168 (440)
Q Consensus 90 ~W~D~i~R~~~el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~l~p~~~ 168 (440)
+|+|.. ++.+++++.+.| ++||||||+|+.|+ |+++.+. ++ +.+++
T Consensus 3 ~~lDsA--d~~~i~~~~~~~~i~GvTTNPsll~k~-----------------g~~~~~~-----~~---~i~~~------ 49 (213)
T TIGR00875 3 FFLDTA--NVEEIKKAAELGILAGVTTNPSLIAKE-----------------GRSFWEV-----LK---EIQEA------ 49 (213)
T ss_pred EEEcCC--CHHHHHHHHhcCCcceEeCCHHHHHhc-----------------CCCHHHH-----HH---HHHHh------
Confidence 688888 478999999999 69999999999983 5554332 22 33443
Q ss_pred hcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHH
Q 036665 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVID 248 (440)
Q Consensus 169 ~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aq 248 (440)
.+|+||+|| +++|+++|+++|++|+++. ||++||||+|++|++||++|+++||+||+|+|||++|+.+|++
T Consensus 50 ----~~g~vs~qv---~~~~~~~mi~~a~~l~~~~--~~i~iKIP~T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~ 120 (213)
T TIGR00875 50 ----VEGPVSAET---ISLDAEGMVEEAKELAKLA--PNIVVKIPMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAK 120 (213)
T ss_pred ----cCCcEEEEE---eeCCHHHHHHHHHHHHHhC--CCeEEEeCCCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHH
Confidence 379999999 6899999999999999984 8999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 036665 249 AYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGA 328 (440)
Q Consensus 249 A~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~ 328 (440)
| | +.|+||||||+|++. .+|...|.+++++|+. +|+
T Consensus 121 a--------G-------a~yispyvgRi~d~g--------------~dg~~~v~~~~~~~~~---------------~~~ 156 (213)
T TIGR00875 121 A--------G-------ATYVSPFVGRLDDIG--------------GDGMKLIEEVKTIFEN---------------HAP 156 (213)
T ss_pred c--------C-------CCEEEeecchHHHcC--------------CCHHHHHHHHHHHHHH---------------cCC
Confidence 6 8 889999999999972 3577777775555543 477
Q ss_pred ccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHhh
Q 036665 329 KKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEG 390 (440)
Q Consensus 329 ~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~~ 390 (440)
++ +|||| |+||+.+ .....++|||++ |+||+++++|.+||.+..+++.|.++|+.
T Consensus 157 ~t-kIlaA--S~r~~~~---v~~~~~~G~d~v-Tip~~vl~~l~~~p~t~~~~~~F~~d~~~ 211 (213)
T TIGR00875 157 DT-EVIAA--SVRHPRH---VLEAALIGADIA-TMPLDVMQQLFNHPLTDIGLERFLKDWNA 211 (213)
T ss_pred CC-EEEEe--ccCCHHH---HHHHHHcCCCEE-EcCHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 65 89999 7999864 444569999999 99999999999999998888888777654
No 17
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=2.5e-45 Score=352.04 Aligned_cols=211 Identities=27% Similarity=0.366 Sum_probs=174.0
Q ss_pred ccccccccccccHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhHHhhh
Q 036665 90 PWYDNLCRPVTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168 (440)
Q Consensus 90 ~W~D~i~R~~~el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~l~p~~~ 168 (440)
+++|.. ++.+++++.+.| ++||||||||+.| +|.++.+. +++| |+++
T Consensus 3 ~flDtA--~~~~i~~~~~~~~i~GvTTNPsll~k-----------------~g~~~~~~-----~~~i---~~~~----- 50 (220)
T PRK12655 3 LYLDTA--NVAEVERLARIFPIAGVTTNPSIIAA-----------------SKESIWEV-----LPRL---QKAI----- 50 (220)
T ss_pred EEEecC--CHHHHHHHHhCCCccEEeCCHHHHHh-----------------cCCCHHHH-----HHHH---HHHh-----
Confidence 577877 478999999998 7999999999998 36655443 2333 5443
Q ss_pred hcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHH
Q 036665 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVID 248 (440)
Q Consensus 169 ~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aq 248 (440)
|.+|+||+|| ++.|+++|+++|++|.++. ||++||||+|++|++||++|+++||+||+|+|||+.|+..+++
T Consensus 51 ---~~~~~v~~qv---~~~d~e~mi~eA~~l~~~~--~nv~IKIP~T~~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~ 122 (220)
T PRK12655 51 ---GGEGILFAQT---MSRDAQGMVEEAKRLRNAI--PGIVVKIPVTAEGLAAIKKLKKEGIPTLGTAVYSAAQGLLAAL 122 (220)
T ss_pred ---CCCCCEEEEE---eeCCHHHHHHHHHHHHHhC--CCEEEEeCCCHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHH
Confidence 3578999999 7999999999999999985 8999999999999999999999999999999999999866655
Q ss_pred HHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 036665 249 AYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGA 328 (440)
Q Consensus 249 A~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~ 328 (440)
| | +.|+||||||+|+. ..+|...+.+++.+|+. +|+
T Consensus 123 a--------G-------a~yIspyvgR~~~~--------------g~dg~~~i~~~~~~~~~---------------~~~ 158 (220)
T PRK12655 123 A--------G-------AKYVAPYVNRVDAQ--------------GGDGIRMVQELQTLLEM---------------HAP 158 (220)
T ss_pred c--------C-------CeEEEeecchHhHc--------------CCCHHHHHHHHHHHHHh---------------cCC
Confidence 4 8 78999999999875 23566666665555543 366
Q ss_pred ccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHhhH
Q 036665 329 KKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGI 391 (440)
Q Consensus 329 ~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~~~ 391 (440)
++ +|||| |+||+.+ .+...++|||++ |+||+++++|.+||.+..+++.|.++|+..
T Consensus 159 ~t-kILaA--S~r~~~~---v~~~~~~G~d~v-Tip~~vl~~l~~~p~t~~~~~~F~~dw~~~ 214 (220)
T PRK12655 159 ES-MVLAA--SFKTPRQ---ALDCLLAGCQSI-TLPLDVAQQMLNTPAVESAIEKFEQDWQAA 214 (220)
T ss_pred Cc-EEEEE--ecCCHHH---HHHHHHcCCCEE-ECCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 64 99999 7999865 344558999998 999999999999999988888887777653
No 18
>PRK01362 putative translaldolase; Provisional
Probab=100.00 E-value=2.6e-45 Score=350.68 Aligned_cols=208 Identities=31% Similarity=0.486 Sum_probs=174.7
Q ss_pred ccccccccccccHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhHHhhh
Q 036665 90 PWYDNLCRPVTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168 (440)
Q Consensus 90 ~W~D~i~R~~~el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~l~p~~~ 168 (440)
+|+|.. ++.+++++.+.| ++|+||||+|+.|+ |++..+. +++++++
T Consensus 3 ~~lDsA--~~~ei~~~~~~~~i~GvTTNPsll~k~-----------------g~~~~~~--------~~~i~~~------ 49 (214)
T PRK01362 3 FFIDTA--NVEEIKEANELGVLDGVTTNPSLIAKE-----------------GRDFEEV--------IKEICSI------ 49 (214)
T ss_pred EEEecC--CHHHHHHHHhCCCcceEcCCHHHHHhc-----------------CCCHHHH--------HHHHHHh------
Confidence 789988 478999999999 69999999999983 5544432 2333443
Q ss_pred hcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHH
Q 036665 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVID 248 (440)
Q Consensus 169 ~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aq 248 (440)
.+|+||+||+ ++|+++|+++|++|.++. ||++||||+|++|++|+++|+++||+||+|+|||+.|+.+|++
T Consensus 50 ----i~g~vs~qv~---~~d~~~m~~~a~~l~~~~--~~i~iKIP~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~ 120 (214)
T PRK01362 50 ----VDGPVSAEVI---ALDAEGMIKEGRELAKIA--PNVVVKIPMTPEGLKAVKALSKEGIKTNVTLIFSANQALLAAK 120 (214)
T ss_pred ----cCCCEEEEEe---eCCHHHHHHHHHHHHHhC--CCEEEEeCCCHHHHHHHHHHHHCCCceEEeeecCHHHHHHHHh
Confidence 3699999996 899999999999999985 8999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 036665 249 AYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGA 328 (440)
Q Consensus 249 A~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~ 328 (440)
| | +.|+||||||+|++ ..+|...+.+++++|+. +|+
T Consensus 121 a--------G-------a~yispyvgRi~d~--------------g~dg~~~i~~~~~~~~~---------------~~~ 156 (214)
T PRK01362 121 A--------G-------ATYVSPFVGRLDDI--------------GTDGMELIEDIREIYDN---------------YGF 156 (214)
T ss_pred c--------C-------CcEEEeecchHhhc--------------CCCHHHHHHHHHHHHHH---------------cCC
Confidence 6 8 89999999999887 34677777776555543 467
Q ss_pred ccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHhh
Q 036665 329 KKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEG 390 (440)
Q Consensus 329 ~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~~ 390 (440)
++ +|||| |+||+.+ .....++|||++ |+||+++++|.+||.+..+++.|.++|..
T Consensus 157 ~t-kilaA--S~r~~~~---v~~~~~~G~d~i-Ti~~~vl~~l~~~p~t~~~~~~F~~dw~~ 211 (214)
T PRK01362 157 DT-EIIAA--SVRHPMH---VLEAALAGADIA-TIPYKVIKQLFKHPLTDKGLEKFLADWEK 211 (214)
T ss_pred Cc-EEEEe--ecCCHHH---HHHHHHcCCCEE-ecCHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 64 99999 7999864 444568999998 99999999999999998888888777654
No 19
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=2.6e-45 Score=352.20 Aligned_cols=212 Identities=25% Similarity=0.371 Sum_probs=175.7
Q ss_pred ccccccccccccHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHhHHhh
Q 036665 90 PWYDNLCRPVTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSG-KDIEAAYWELVIKDIQDACKLFESIY 167 (440)
Q Consensus 90 ~W~D~i~R~~~el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g-~~~~e~y~~L~i~di~~a~d~l~p~~ 167 (440)
+|+|.. ++.+++++.+.| +.||||||||+.|+ | .++.+. ++ ++|+++
T Consensus 3 ~flDtA--d~~~i~~~~~~~~i~GvTTNPsll~k~-----------------g~~~~~~~-----~~---~i~~~i---- 51 (222)
T PRK12656 3 FMLDTL--NLEAIKKWHEILPLAGVTSNPSIAKKE-----------------GDIDFFER-----IR---EVREII---- 51 (222)
T ss_pred EEEecC--CHHHHHHHHhcCCcceEeCCHHHHHhc-----------------CCCCHHHH-----HH---HHHHHh----
Confidence 578877 478999999998 79999999999983 3 244432 23 334443
Q ss_pred hhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHH
Q 036665 168 DETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVI 247 (440)
Q Consensus 168 ~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~a 247 (440)
+.+++||+|| +++|+++|+++|++|++.++ +|++||||+|++|++||++|+++||+||+|+|||++|+..++
T Consensus 52 ----~~~~~vs~ev---~~~~~~~mi~eA~~l~~~~~-~nv~VKIP~T~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~Aa 123 (222)
T PRK12656 52 ----GDEASIHVQV---VAQDYEGILKDAHEIRRQCG-DDVYIKVPVTPAGLAAIKTLKAEGYHITATAIYTVFQGLLAI 123 (222)
T ss_pred ----CCCCcEEEEE---EECCHHHHHHHHHHHHHHhC-CCEEEEeCCCHHHHHHHHHHHHCCCceEEeeeCCHHHHHHHH
Confidence 1357899999 79999999999999998775 999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcC
Q 036665 248 DAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKG 327 (440)
Q Consensus 248 qA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G 327 (440)
+| | +.|+||||||+|+. ..+|...|.++..+|+.| +
T Consensus 124 ~a--------G-------a~yvsPyvgRi~d~--------------g~D~~~~i~~i~~~~~~~---------------~ 159 (222)
T PRK12656 124 EA--------G-------ADYLAPYYNRMENL--------------NIDSNAVIGQLAEAIDRE---------------N 159 (222)
T ss_pred HC--------C-------CCEEecccchhhhc--------------CCCHHHHHHHHHHHHHhc---------------C
Confidence 65 8 79999999999885 235667787777777654 5
Q ss_pred CccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHhhH
Q 036665 328 AKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGI 391 (440)
Q Consensus 328 ~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~~~ 391 (440)
++ ++|||| |+||+.+ .....++|||++ |+||+++++|.+||.+...++.|.++|+..
T Consensus 160 ~~-tkILaA--S~r~~~~---v~~a~~~G~d~v-Tvp~~vl~~l~~~p~t~~~~~~F~~dw~~~ 216 (222)
T PRK12656 160 SD-SKILAA--SFKNVAQ---VNKAFALGAQAV-TAGPDVFEAAFAMPSIQKAVDDFADDWEAI 216 (222)
T ss_pred CC-CEEEEE--ecCCHHH---HHHHHHcCCCEE-ecCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 65 499999 7999875 455568999999 999999999999999988888888777654
No 20
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=8.1e-45 Score=348.59 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=172.8
Q ss_pred ccccccccccccHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhHHhhh
Q 036665 90 PWYDNLCRPVTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168 (440)
Q Consensus 90 ~W~D~i~R~~~el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~l~p~~~ 168 (440)
+++|.. ++.+++++.+.| ++||||||||+.| +|.++.+. +++| ++++
T Consensus 3 ~flDtA--~~~~i~~~~~~~~i~GvTTNPsll~k-----------------~g~~~~~~-----~~~i---~~~~----- 50 (220)
T PRK12653 3 LYLDTS--DVVAVKALSRIFPLAGVTTNPSIIAA-----------------GKKPLEVV-----LPQL---HEAM----- 50 (220)
T ss_pred EEEecC--CHHHHHHHHhCCCccEEeCCHHHHHh-----------------cCCCHHHH-----HHHH---HHHh-----
Confidence 577877 478999999998 7999999999998 35555443 2344 4433
Q ss_pred hcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHH
Q 036665 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVID 248 (440)
Q Consensus 169 ~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aq 248 (440)
+.+|+||+|| +++|+++|+++|++|.++. ||++||||+|++|++||+.|+++||+||+|+|||++|+..+++
T Consensus 51 ---~~~~~v~~Qv---~~~d~e~mi~ea~~l~~~~--~ni~IKIP~T~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~Aa~ 122 (220)
T PRK12653 51 ---GGQGRLFAQV---MATTAEGMVNDARKLRSII--ADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSAL 122 (220)
T ss_pred ---CCCCcEEEEE---ecCCHHHHHHHHHHHHHhC--CCEEEEeCCCHHHHHHHHHHHHcCCCeeEEEecCHHHHHHHHh
Confidence 2468999999 6899999999999999984 8999999999999999999999999999999999999876665
Q ss_pred HHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 036665 249 AYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGA 328 (440)
Q Consensus 249 A~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~ 328 (440)
| | +.|+||||||+|++ ..+|...+.+++++|+. +|+
T Consensus 123 a--------G-------a~yIspyvgR~~~~--------------g~dg~~~i~~i~~~~~~---------------~~~ 158 (220)
T PRK12653 123 A--------G-------AEYVAPYVNRIDAQ--------------GGSGIQTVTDLQQLLKM---------------HAP 158 (220)
T ss_pred c--------C-------CcEEEeecChHhhc--------------CCChHHHHHHHHHHHHh---------------cCC
Confidence 4 8 89999999999985 23566666665555443 466
Q ss_pred ccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHhhH
Q 036665 329 KKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGI 391 (440)
Q Consensus 329 ~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~~~ 391 (440)
++ +|||| |+||+.+ .+...++|+|++ |+|++++++|.+||.+..+++.|.++|...
T Consensus 159 ~t-kILaA--S~r~~~~---v~~~~~~G~d~v-Tip~~vl~~l~~~p~t~~~~~~F~~dw~~~ 214 (220)
T PRK12653 159 QA-KVLAA--SFKTPRQ---ALDCLLAGCESI-TLPLDVAQQMISYPAVDAAVAKFEQDWQGA 214 (220)
T ss_pred Cc-EEEEE--ecCCHHH---HHHHHHcCCCEE-ECCHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 64 99999 7999875 445568999998 999999999999999988887777776643
No 21
>PRK12376 putative translaldolase; Provisional
Probab=100.00 E-value=5.4e-44 Score=345.72 Aligned_cols=213 Identities=27% Similarity=0.403 Sum_probs=173.9
Q ss_pred cccccccccccccHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHhHHh
Q 036665 89 SPWYDNLCRPVTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGK-DIEAAYWELVIKDIQDACKLFESI 166 (440)
Q Consensus 89 s~W~D~i~R~~~el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~-~~~e~y~~L~i~di~~a~d~l~p~ 166 (440)
.+|+|.. ++.+++++.+.| ++||||||||+.|+ |. ++.+. +++.|+++
T Consensus 7 k~flDtA--d~~eik~~~~~g~i~GVTTNPsll~k~-----------------g~~~~~~~--------~~~i~~~~--- 56 (236)
T PRK12376 7 KIFADGA--DLEEMLAAYKNPLVKGFTTNPSLMRKA-----------------GVTDYKAF--------AKEVLAEI--- 56 (236)
T ss_pred EEEEecC--CHHHHHHHHhCCCeeEEECCHHHHHhc-----------------CCCCHHHH--------HHHHHHhc---
Confidence 4788888 478999999999 79999999999983 33 33332 22334432
Q ss_pred hhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc----chHHHHHHHHHCCCceEEeecCCHHH
Q 036665 167 YDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA----PCVPSIKEVISQGISVNVTLIFSLAR 242 (440)
Q Consensus 167 ~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~----eGi~Ai~~L~~~GI~vN~TlIFS~~Q 242 (440)
.+|+||+|| +++|+++|+++|++|+++ +||++||||+|+ +|++||++|+++||+||+|+|||+.|
T Consensus 57 ------~~~~vs~EV---~~~d~~~mv~eA~~l~~~--~~nv~VKIP~T~~~G~~gl~Ai~~L~~~GI~vn~T~vfs~~Q 125 (236)
T PRK12376 57 ------PDAPISFEV---FADDLETMEKEAEKIASL--GENVYVKIPITNTKGESTIPLIKKLSADGVKLNVTAIFTIEQ 125 (236)
T ss_pred ------CCCcEEEEE---ecCCHHHHHHHHHHHHHh--CCCeEEEECCcCccchhHHHHHHHHHHCCCeEEEeeecCHHH
Confidence 257999999 799999999999999998 589999999998 77999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHH
Q 036665 243 YEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDA 322 (440)
Q Consensus 243 a~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~ 322 (440)
+.++++|+..| | ++|+||||||+|+. ..+|...|.+++.+|+.|
T Consensus 126 a~~a~~A~ag~----g-------a~yispfvgR~dd~--------------g~D~~~~i~~i~~i~~~~----------- 169 (236)
T PRK12376 126 VKEVVDALTPG----V-------PAIVSVFAGRIADT--------------GVDPVPLMKEALAICHSK----------- 169 (236)
T ss_pred HHHHHHHhcCC----C-------CeEEEEecchhhhc--------------CCCcHHHHHHHHHHHHhC-----------
Confidence 99888875332 3 78999999999875 346788888888887642
Q ss_pred HHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHh-----CCccccccccchhHHhh
Q 036665 323 LVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVD-----HGAVSRTIDLNVSEAEG 390 (440)
Q Consensus 323 l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~-----~~~~~~~l~~~~~~a~~ 390 (440)
. .++|||| |+||+.+ +.-..++|||++ |+||+++++|.+ ||.+..+++.|.++|+.
T Consensus 170 -----~-~tkILaA--SiR~~~~---v~~a~~~Gad~v-Tvp~~v~~~l~~~~~~~~~~t~~~v~~F~~Dw~~ 230 (236)
T PRK12376 170 -----P-GVELLWA--SPREVYN---IIQADQLGCDII-TVTPDVLKKLPLLGKDLEELSLETVKGFAKDAQA 230 (236)
T ss_pred -----C-CcEEEEE--ecCCHHH---HHHHHHcCCCEE-EcCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Confidence 2 4599999 7999876 566679999999 999999999997 56666666777666653
No 22
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=100.00 E-value=3.4e-43 Score=339.83 Aligned_cols=213 Identities=25% Similarity=0.389 Sum_probs=170.8
Q ss_pred ccccccccccccccHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHhHH
Q 036665 88 QSPWYDNLCRPVTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGK-DIEAAYWELVIKDIQDACKLFES 165 (440)
Q Consensus 88 qs~W~D~i~R~~~el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~-~~~e~y~~L~i~di~~a~d~l~p 165 (440)
-.+|+|.. ++.+++++.+.| ++||||||||+.|+ |. ++++. ++++. | .+
T Consensus 6 mk~flDtA--d~~ei~~~~~~g~i~GvTTNPsll~k~-----------------g~~~~~~~-----~~~i~--~-~~-- 56 (236)
T TIGR02134 6 VKVFADGA--NLEEMVKFSTHPYVKGFTTNPSLMRKA-----------------GIVDYEAF-----AHEAL--A-QI-- 56 (236)
T ss_pred eEEEEeCC--CHHHHHHHHhCCCeeEEeCCHHHHHhc-----------------CCCCHHHH-----HHHHH--H-Hc--
Confidence 35788888 478999999999 79999999999984 32 33322 12221 1 11
Q ss_pred hhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcc-h---HHHHHHHHHCCCceEEeecCCHH
Q 036665 166 IYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAP-C---VPSIKEVISQGISVNVTLIFSLA 241 (440)
Q Consensus 166 ~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~e-G---i~Ai~~L~~~GI~vN~TlIFS~~ 241 (440)
.+|+||+|| +++|+++|+++|++|.++ +||++||||+|++ | ++||++|.++||+||+|+|||+.
T Consensus 57 -------~~~~vs~EV---~~~d~~~m~~eA~~l~~~--~~nv~VKIP~T~~~G~~~l~ai~~L~~~GI~vn~T~vfs~~ 124 (236)
T TIGR02134 57 -------TDLPISFEV---FADDLDEMEKEARYIASW--GNNVNVKIPVTNTKGESTGPLIQKLSADGITLNVTALTTIE 124 (236)
T ss_pred -------cCCcEEEEE---ecCCHHHHHHHHHHHHhc--CCCeEEEECCcCcccchHHHHHHHHHHCCCcEEeehcCCHH
Confidence 478999999 799999999999999887 4999999999997 7 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchH
Q 036665 242 RYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWD 321 (440)
Q Consensus 242 Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~ 321 (440)
|+..+++|+.+|. +.|+||||||+|+. ..+|...|.+++.+|+.|
T Consensus 125 Qa~~aa~A~~aG~-----------a~yispfvgR~dd~--------------g~D~~~~i~~i~~i~~~~---------- 169 (236)
T TIGR02134 125 QVEKVCQSFTDGV-----------PGIVSVFAGRIADT--------------GVDPEPHMREALEIVAQK---------- 169 (236)
T ss_pred HHHHHHHHHhCCC-----------CeEEEEecchhhhc--------------CCCcHHHHHHHHHHHHhC----------
Confidence 9999988865542 58999999999886 356778888888777653
Q ss_pred HHHhcCCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHH--hCCccc---cccccchhHHh
Q 036665 322 ALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFV--DHGAVS---RTIDLNVSEAE 389 (440)
Q Consensus 322 ~l~~~G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~--~~~~~~---~~l~~~~~~a~ 389 (440)
. .++|||| |+||+.+ +....++|||++ |+|++++++|. +||... .++..|.++|+
T Consensus 170 ------~-~tkILaA--S~R~~~~---v~~a~~~Gad~v-Tvp~~v~~~l~~~~~~~~~~t~~av~~F~~Dw~ 229 (236)
T TIGR02134 170 ------P-GVELLWA--SPRELFN---IIQADRIGCDII-TCAHDILAKLPLLGKDLTQYSLETVQMFAKDAQ 229 (236)
T ss_pred ------C-CcEEEEE--ccCCHHH---HHHHHHcCCCEE-ECCHHHHHHHHhcCCCCChhHHHHHHHHHHHHH
Confidence 2 4599999 7999875 556679999998 99999999996 666553 44445555444
No 23
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=100.00 E-value=7.4e-41 Score=319.37 Aligned_cols=207 Identities=31% Similarity=0.504 Sum_probs=171.7
Q ss_pred ccccccccccccHHHHHhCC-CCccccChHHHHHHHhCCcchHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHhHHhh
Q 036665 90 PWYDNLCRPVTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGK-DIEAAYWELVIKDIQDACKLFESIY 167 (440)
Q Consensus 90 ~W~D~i~R~~~el~~li~~G-v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~-~~~e~y~~L~i~di~~a~d~l~p~~ 167 (440)
+|+|.. ++.+++++.+.| ++||||||+|+.|+ |+ ++.+. +++ .+++
T Consensus 2 ~~lDsa--~~~ei~~~~~~~~i~GvTTNPsll~k~-----------------~~~~~~~~-----~~~---i~~~----- 49 (211)
T cd00956 2 IFLDTA--DLEEIKKASETGLLDGVTTNPSLIAKS-----------------GRIDFEAV-----LKE---ICEI----- 49 (211)
T ss_pred EEecCC--CHHHHHHHHhcCCcCccccCHHHHHhc-----------------CCcCHHHH-----HHH---HHHh-----
Confidence 689988 488999999998 69999999999983 44 33332 223 3443
Q ss_pred hhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHH
Q 036665 168 DETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVI 247 (440)
Q Consensus 168 ~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~a 247 (440)
.+|+||+|| .++|+|+|+++|++|+++. +|++||||+|++|++||++|.++||+||+|+|||++|+..++
T Consensus 50 -----~~~~v~~qv---~~~~~e~~i~~a~~l~~~~--~~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa 119 (211)
T cd00956 50 -----IDGPVSAQV---VSTDAEGMVAEARKLASLG--GNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIFSAAQALLAA 119 (211)
T ss_pred -----cCCCEEEEE---EeCCHHHHHHHHHHHHHhC--CCEEEEEcCcHhHHHHHHHHHHcCCceeeEEecCHHHHHHHH
Confidence 368999999 5899999999999999985 699999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcC
Q 036665 248 DAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKG 327 (440)
Q Consensus 248 qA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G 327 (440)
+| | +.|+||||||+|++ ..+|...+..+.++|+. +|
T Consensus 120 ~A--------G-------A~yvsP~vgR~~~~--------------g~dg~~~i~~i~~~~~~---------------~~ 155 (211)
T cd00956 120 KA--------G-------ATYVSPFVGRIDDL--------------GGDGMELIREIRTIFDN---------------YG 155 (211)
T ss_pred Hc--------C-------CCEEEEecChHhhc--------------CCCHHHHHHHHHHHHHH---------------cC
Confidence 87 8 78999999999987 24677777665555554 46
Q ss_pred CccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccchhHHh
Q 036665 328 AKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAE 389 (440)
Q Consensus 328 ~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~~~~a~ 389 (440)
+++ +||+| |+||+.+ .....++|+|.| |+||+++++|.+||.+..++..|.++|.
T Consensus 156 ~~t-kil~A--s~r~~~e---i~~a~~~Gad~v-Tv~~~vl~~l~~~~~t~~~v~~F~~d~~ 210 (211)
T cd00956 156 FDT-KILAA--SIRNPQH---VIEAALAGADAI-TLPPDVLEQLLKHPLTDKGVEKFLEDWQ 210 (211)
T ss_pred CCc-eEEec--ccCCHHH---HHHHHHcCCCEE-EeCHHHHHHHhcCccHHHHHHHHHHHhh
Confidence 664 99999 8999875 344558999999 9999999999999999877777776654
No 24
>KOG2772 consensus Transaldolase [Carbohydrate transport and metabolism]
Probab=93.30 E-value=0.044 Score=55.50 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=43.0
Q ss_pred eeeeccccCCCCCchhhhhhhcCCCeeccCcHHHHHHHHhCCccccccccc
Q 036665 334 LWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLN 384 (440)
Q Consensus 334 L~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~~~l~al~~~~~~~~~l~~~ 384 (440)
+|+++.+|++.+.|.+++..+++.+.+++.++...+.+..|..+.+..+..
T Consensus 239 frn~~eik~lag~D~ltisp~ll~~l~~s~~~~~~~l~a~~ak~~~~~k~~ 289 (337)
T KOG2772|consen 239 FRNTGEIKNLAGVDYLTISPALLPQLVNSTEDQPLELSASHAKLKDLEKVS 289 (337)
T ss_pred hhchhhhhhcccCceeeecHHHHHHHhhCCCccchhhhhhhhhccCccccc
Confidence 566789999999999999999999999999999899888888765444433
No 25
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=86.37 E-value=8.5 Score=37.23 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEEcC-CCcchHHHHHHHHHC--CCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCC
Q 036665 186 ADDTQGTVEAAKWLHKVVNRPNVYIKIP-ATAPCVPSIKEVISQ--GISVNVTLIFSLARYEEVIDAYLDGLEASGLSDL 262 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~v~r~nv~IKIP-aT~eGi~Ai~~L~~~--GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~ 262 (440)
..|.+..++.++.|++. |=+ +|=|+ -|+..++++++|.++ ++.|=+-.|.+.+|+..+.+| |
T Consensus 16 ~~~~e~a~~~~~al~~~-Gi~--~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a--------G---- 80 (204)
T TIGR01182 16 IDDVDDALPLAKALIEG-GLR--VLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA--------G---- 80 (204)
T ss_pred cCCHHHHHHHHHHHHHc-CCC--EEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc--------C----
Confidence 57899999999999986 213 34444 566889999999875 588889999999999887776 6
Q ss_pred CccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCCccceeeeeeccccC
Q 036665 263 SRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKN 342 (440)
Q Consensus 263 ~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn 342 (440)
...++||..+. .+-+...+.+.+ ..+|..-..+ +++.++ .|++..|+-=|+ .+-.
T Consensus 81 --A~FivsP~~~~---~v~~~~~~~~i~---~iPG~~TptE---i~~A~~-------------~Ga~~vKlFPA~-~~GG 135 (204)
T TIGR01182 81 --AQFIVSPGLTP---ELAKHAQDHGIP---IIPGVATPSE---IMLALE-------------LGITALKLFPAE-VSGG 135 (204)
T ss_pred --CCEEECCCCCH---HHHHHHHHcCCc---EECCCCCHHH---HHHHHH-------------CCCCEEEECCch-hcCC
Confidence 35788998743 222222222222 4556444444 444432 488777766663 2222
Q ss_pred CCCCchhhhhhhcCCCe----ec--cCcHHHHHHHHhCCcc
Q 036665 343 PAYPDTLYVAPLIGPDT----VS--TMPDQALQAFVDHGAV 377 (440)
Q Consensus 343 ~~~~~~~~v~~L~G~d~----v~--TiP~~~l~al~~~~~~ 377 (440)
|. |+.+|.|+=- +- =++++-+.++++.|.+
T Consensus 136 ~~-----yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~ 171 (204)
T TIGR01182 136 VK-----MLKALAGPFPQVRFCPTGGINLANVRDYLAAPNV 171 (204)
T ss_pred HH-----HHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCE
Confidence 44 4444443310 10 1345667777776655
No 26
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=84.28 E-value=3.6 Score=43.83 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=79.3
Q ss_pred HcCCChHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCC----
Q 036665 139 QSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPA---- 214 (440)
Q Consensus 139 ~~g~~~~e~y~~L~i~di~~a~d~l~p~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPa---- 214 (440)
..|.+.-.+|++| .|++..-.-+.-.=.-.....|-+|.-++| .++.+--++-|++|.++ +-+-|+||=-+
T Consensus 109 ~nGidvfRiFDAl--ND~RNl~~ai~a~kk~G~h~q~~i~YT~sP--vHt~e~yv~~akel~~~-g~DSIciKDmaGllt 183 (472)
T COG5016 109 ENGIDVFRIFDAL--NDVRNLKTAIKAAKKHGAHVQGTISYTTSP--VHTLEYYVELAKELLEM-GVDSICIKDMAGLLT 183 (472)
T ss_pred hcCCcEEEechhc--cchhHHHHHHHHHHhcCceeEEEEEeccCC--cccHHHHHHHHHHHHHc-CCCEEEeecccccCC
Confidence 3466654455543 344444333332223355678999999999 79999999999999997 45899999433
Q ss_pred CcchHHHHHHHHHC-CCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhh
Q 036665 215 TAPCVPSIKEVISQ-GISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRV 276 (440)
Q Consensus 215 T~eGi~Ai~~L~~~-GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRi 276 (440)
-.++.+-++.++++ +++|++-.-.+..=+. .+|+++.| +| .| .+...||||-+--
T Consensus 184 P~~ayelVk~iK~~~~~pv~lHtH~TsG~a~---m~ylkAvE-AG-vD--~iDTAisp~S~gt 239 (472)
T COG5016 184 PYEAYELVKAIKKELPVPVELHTHATSGMAE---MTYLKAVE-AG-VD--GIDTAISPLSGGT 239 (472)
T ss_pred hHHHHHHHHHHHHhcCCeeEEecccccchHH---HHHHHHHH-hC-cc--hhhhhhccccCCC
Confidence 33778888888875 7877765444443322 23444553 25 22 3455678876543
No 27
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.42 E-value=14 Score=35.75 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEEcCC-CcchHHHHHHHHHC--CCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCC
Q 036665 186 ADDTQGTVEAAKWLHKVVNRPNVYIKIPA-TAPCVPSIKEVISQ--GISVNVTLIFSLARYEEVIDAYLDGLEASGLSDL 262 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~v~r~nv~IKIPa-T~eGi~Ai~~L~~~--GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~ 262 (440)
..|.+..++-++.|++. |=. +|=|+. |+..+++|++|.++ ++.|=+-.|.+.+|+..+.+| |
T Consensus 12 ~~~~~~a~~ia~al~~g-Gi~--~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a--------G---- 76 (201)
T PRK06015 12 IDDVEHAVPLARALAAG-GLP--AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA--------G---- 76 (201)
T ss_pred cCCHHHHHHHHHHHHHC-CCC--EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc--------C----
Confidence 56899999999999885 223 344443 66789999999865 688889999999999888776 6
Q ss_pred CccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCCccceeeee
Q 036665 263 SRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWA 336 (440)
Q Consensus 263 ~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~A 336 (440)
...++||.++.= +-+...+.+. ...||..-..+ +++.|+ .|++..|+-=|
T Consensus 77 --A~FivSP~~~~~---vi~~a~~~~i---~~iPG~~TptE---i~~A~~-------------~Ga~~vK~FPa 126 (201)
T PRK06015 77 --SRFIVSPGTTQE---LLAAANDSDV---PLLPGAATPSE---VMALRE-------------EGYTVLKFFPA 126 (201)
T ss_pred --CCEEECCCCCHH---HHHHHHHcCC---CEeCCCCCHHH---HHHHHH-------------CCCCEEEECCc
Confidence 367889976542 2222222222 24566544444 444442 48876666655
No 28
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.00 E-value=27 Score=34.19 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEEcCC-CcchHHHHHHHHH----C--CCceEEeecCCHHHHHHHHHHHHHHHHHcC
Q 036665 186 ADDTQGTVEAAKWLHKVVNRPNVYIKIPA-TAPCVPSIKEVIS----Q--GISVNVTLIFSLARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~v~r~nv~IKIPa-T~eGi~Ai~~L~~----~--GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG 258 (440)
..|.+..++.++.|++. |=. +|=|+- |+.++++++.|.+ + ++.+=+-.|.+.+|+.++.+| |
T Consensus 23 ~~~~~~a~~~~~al~~g-Gi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a--------G 91 (222)
T PRK07114 23 HADVEVAKKVIKACYDG-GAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL--------G 91 (222)
T ss_pred cCCHHHHHHHHHHHHHC-CCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc--------C
Confidence 67999999999999985 112 445554 5588999999852 2 488889999999999887776 6
Q ss_pred CCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCCccceeeee
Q 036665 259 LSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWA 336 (440)
Q Consensus 259 ~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~A 336 (440)
...++||.++.= +-+...+.+. ..+||.....+ +.+.++ .|++..|+-=|
T Consensus 92 ------A~FiVsP~~~~~---v~~~~~~~~i---~~iPG~~TpsE---i~~A~~-------------~Ga~~vKlFPA 141 (222)
T PRK07114 92 ------ANFIVTPLFNPD---IAKVCNRRKV---PYSPGCGSLSE---IGYAEE-------------LGCEIVKLFPG 141 (222)
T ss_pred ------CCEEECCCCCHH---HHHHHHHcCC---CEeCCCCCHHH---HHHHHH-------------CCCCEEEECcc
Confidence 367889976542 2222222221 24566544444 444432 48776666655
No 29
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=72.95 E-value=15 Score=35.34 Aligned_cols=146 Identities=22% Similarity=0.280 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEEcCC-CcchHHHHHHHHH--CCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCC
Q 036665 186 ADDTQGTVEAAKWLHKVVNRPNVYIKIPA-TAPCVPSIKEVIS--QGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDL 262 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~v~r~nv~IKIPa-T~eGi~Ai~~L~~--~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~ 262 (440)
..|.+..++-++.|++. |=+ +|=|+. |+.++++|+.+.+ .++.|=+-.|.+.+|+.++.+| |
T Consensus 16 ~~~~~~a~~~~~al~~g-Gi~--~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a--------G---- 80 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEG-GIR--AIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA--------G---- 80 (196)
T ss_dssp TSSGGGHHHHHHHHHHT-T----EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH--------T----
T ss_pred cCCHHHHHHHHHHHHHC-CCC--EEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc--------C----
Confidence 57888899999999885 112 344443 5577999998876 4899999999999999888877 6
Q ss_pred CccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCCccceeeeeeccccC
Q 036665 263 SRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKN 342 (440)
Q Consensus 263 ~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn 342 (440)
...++||-.+. .+-+...+.+.+ -.||..-..++..+++ .|++.-|+-=| +.-+
T Consensus 81 --A~FivSP~~~~---~v~~~~~~~~i~---~iPG~~TptEi~~A~~----------------~G~~~vK~FPA--~~~G 134 (196)
T PF01081_consen 81 --AQFIVSPGFDP---EVIEYAREYGIP---YIPGVMTPTEIMQALE----------------AGADIVKLFPA--GALG 134 (196)
T ss_dssp ---SEEEESS--H---HHHHHHHHHTSE---EEEEESSHHHHHHHHH----------------TT-SEEEETTT--TTTT
T ss_pred --CCEEECCCCCH---HHHHHHHHcCCc---ccCCcCCHHHHHHHHH----------------CCCCEEEEecc--hhcC
Confidence 36788996543 222222222221 4566444444333333 47766555555 2222
Q ss_pred -CCCCchhhhhhhcCCCe-ec-----cCcHHHHHHHHhCCcc
Q 036665 343 -PAYPDTLYVAPLIGPDT-VS-----TMPDQALQAFVDHGAV 377 (440)
Q Consensus 343 -~~~~~~~~v~~L~G~d~-v~-----TiP~~~l~al~~~~~~ 377 (440)
+ -|+.+|.|+=- +. =+.++-+.++.+.|.+
T Consensus 135 G~-----~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~ 171 (196)
T PF01081_consen 135 GP-----SYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAV 171 (196)
T ss_dssp HH-----HHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTB
T ss_pred cH-----HHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCE
Confidence 3 35555555410 11 1234556777777655
No 30
>PRK09875 putative hydrolase; Provisional
Probab=71.72 E-value=52 Score=33.49 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCccE-EEEecC-CCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchH
Q 036665 142 KDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYV-SVEVSP-RLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCV 219 (440)
Q Consensus 142 ~~~~e~y~~L~i~di~~a~d~l~p~~~~~~g~~G~V-S~EVdP-~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi 219 (440)
.+.+++++ +.+++|.+-.+ .++..+|.| -+=++. .+....+..++.|-+.+..-| =-|.+=.|...+|+
T Consensus 96 ~~~e~la~-~~i~ei~~Gi~-------gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG-~pi~~Ht~~~~~g~ 166 (292)
T PRK09875 96 RSVQELAQ-EMVDEIEQGID-------GTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTG-RPISTHTSFSTMGL 166 (292)
T ss_pred CCHHHHHH-HHHHHHHHhhc-------cCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHC-CcEEEcCCCccchH
Confidence 34455443 34455544432 244456775 444444 356677777877777766533 34777777777999
Q ss_pred HHHHHHHHCCC---ceEEeec---CCHHHHHHHHH
Q 036665 220 PSIKEVISQGI---SVNVTLI---FSLARYEEVID 248 (440)
Q Consensus 220 ~Ai~~L~~~GI---~vN~TlI---FS~~Qa~a~aq 248 (440)
+.++.|.++|+ +|-++-+ ++++....+++
T Consensus 167 e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~ 201 (292)
T PRK09875 167 EQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMID 201 (292)
T ss_pred HHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHH
Confidence 99999999999 6666666 67776655554
No 31
>PRK05660 HemN family oxidoreductase; Provisional
Probab=67.15 E-value=47 Score=34.67 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=46.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc--------------chHHHHHHHHHCCCc-eEEeecCC
Q 036665 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA--------------PCVPSIKEVISQGIS-VNVTLIFS 239 (440)
Q Consensus 175 G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~--------------eGi~Ai~~L~~~GI~-vN~TlIFS 239 (440)
-.|++|++|..-.. +..+.|.+. |-.+|-|-|-... +-++|++.+.+.|+. ||+.++|.
T Consensus 94 ~eit~e~np~~l~~-----e~l~~Lk~~-Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~G 167 (378)
T PRK05660 94 AEITMEANPGTVEA-----DRFVGYQRA-GVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHG 167 (378)
T ss_pred cEEEEEeCcCcCCH-----HHHHHHHHc-CCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC
Confidence 37999999875422 233333332 3346666665544 567889999999995 79999998
Q ss_pred -HHHHHHHHHHHHHHHHHcC
Q 036665 240 -LARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 240 -~~Qa~a~aqA~lagl~~aG 258 (440)
+.|-..-++.-+.-+.+.|
T Consensus 168 lpgqt~~~~~~~l~~~~~l~ 187 (378)
T PRK05660 168 LPDQSLEEALDDLRQAIALN 187 (378)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 3344333333333332335
No 32
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=66.52 E-value=40 Score=36.04 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=50.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc--------------chHHHHHHHHHCCCc-eEEeecC
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA--------------PCVPSIKEVISQGIS-VNVTLIF 238 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~--------------eGi~Ai~~L~~~GI~-vN~TlIF 238 (440)
+..+++|++|..- +++.++.-+++ |-.+|-|-|-... .-+++++.+.+.|+. ||+.+||
T Consensus 138 ~~e~tie~~p~~l--t~e~l~~L~~~----G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~ 211 (453)
T PRK13347 138 EAEIAVEIDPRTV--TAEMLQALAAL----GFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIY 211 (453)
T ss_pred CceEEEEeccccC--CHHHHHHHHHc----CCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEE
Confidence 3579999999754 33444444332 3345555554443 568899999999996 9999999
Q ss_pred C-HHHHHHHHHHHHHHHHHcC
Q 036665 239 S-LARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 239 S-~~Qa~a~aqA~lagl~~aG 258 (440)
. +.|-..-.+.-++-+.+.|
T Consensus 212 GlPgqt~e~~~~tl~~~~~l~ 232 (453)
T PRK13347 212 GLPHQTVESFRETLDKVIALS 232 (453)
T ss_pred eCCCCCHHHHHHHHHHHHhcC
Confidence 8 5555544444444443345
No 33
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.14 E-value=73 Score=30.93 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHhh-cCCCcEEEEcC-CCcchHHHHHHHHHC--CCceEEeecCCHHHHHHHHHHHHHHHHHcCCCC
Q 036665 186 ADDTQGTVEAAKWLHKV-VNRPNVYIKIP-ATAPCVPSIKEVISQ--GISVNVTLIFSLARYEEVIDAYLDGLEASGLSD 261 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~-v~r~nv~IKIP-aT~eGi~Ai~~L~~~--GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~ 261 (440)
..|.++.++-++.|++. + + +|=|+ .|++|+++++.|.++ ++.+=+-.|.+.+|+..+.+| |
T Consensus 23 ~~~~~~a~~i~~al~~~Gi--~--~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~a--------G--- 87 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGL--P--VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEA--------G--- 87 (212)
T ss_pred cCCHHHHHHHHHHHHHcCC--C--EEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHc--------C---
Confidence 68999999999999985 3 2 34444 567899999999875 688999999999998877776 6
Q ss_pred CCccceEEeechhh
Q 036665 262 LSRVTSVASFFVSR 275 (440)
Q Consensus 262 ~~~vasviSpfVgR 275 (440)
...++||.++.
T Consensus 88 ---A~FivsP~~~~ 98 (212)
T PRK05718 88 ---AQFIVSPGLTP 98 (212)
T ss_pred ---CCEEECCCCCH
Confidence 36788998887
No 34
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.86 E-value=68 Score=31.10 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHC-----CCceEEeecCCHHHHHHHHHHHHHHHHHcCCC
Q 036665 186 ADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQ-----GISVNVTLIFSLARYEEVIDAYLDGLEASGLS 260 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~-----GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~ 260 (440)
..|.+..+.-++.|++. |=+.+=|-. -|+.++++|+.|.++ ++.+=+-.|.+.+|+..+.+| |
T Consensus 21 ~~~~~~a~~~~~al~~~-Gi~~iEit~-~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a--------G-- 88 (213)
T PRK06552 21 GESKEEALKISLAVIKG-GIKAIEVTY-TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA--------G-- 88 (213)
T ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEEC-CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc--------C--
Confidence 57999999999999985 223333443 266789999999763 388899999999998877776 6
Q ss_pred CCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHH
Q 036665 261 DLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQ 309 (440)
Q Consensus 261 ~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~ 309 (440)
...++||-++.= +-+...+.+.+ ..||.....++..+++
T Consensus 89 ----A~FivsP~~~~~---v~~~~~~~~i~---~iPG~~T~~E~~~A~~ 127 (213)
T PRK06552 89 ----AQFIVSPSFNRE---TAKICNLYQIP---YLPGCMTVTEIVTALE 127 (213)
T ss_pred ----CCEEECCCCCHH---HHHHHHHcCCC---EECCcCCHHHHHHHHH
Confidence 367889976542 11222222222 4567655555554543
No 35
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=61.63 E-value=77 Score=33.35 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=44.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEc--------------CCCcchHHHHHHHHHCCCc-eEEeecC
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKI--------------PATAPCVPSIKEVISQGIS-VNVTLIF 238 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKI--------------PaT~eGi~Ai~~L~~~GI~-vN~TlIF 238 (440)
+..|++|++|..- + ++.++.-++ . |-.+|-|-| -...+-++|++.+.+.|+. +|+.+||
T Consensus 101 ~~eit~E~~P~~l-t-~e~l~~l~~---~-GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~ 174 (400)
T PRK07379 101 DAEISLEIDPGTF-D-LEQLQGYRS---L-GVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLIS 174 (400)
T ss_pred CCEEEEEeCCCcC-C-HHHHHHHHH---C-CCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 3579999999753 2 234443322 1 223343333 3334678899999999998 9999999
Q ss_pred CHH-HHHHHHHH
Q 036665 239 SLA-RYEEVIDA 249 (440)
Q Consensus 239 S~~-Qa~a~aqA 249 (440)
.++ |...-.+.
T Consensus 175 GlPgqt~e~~~~ 186 (400)
T PRK07379 175 GLPHQTLEDWQA 186 (400)
T ss_pred CCCCCCHHHHHH
Confidence 954 65444443
No 36
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=60.57 E-value=67 Score=34.32 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=48.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCC--------------cchHHHHHHHHHCCC-ceEEeecCC
Q 036665 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPAT--------------APCVPSIKEVISQGI-SVNVTLIFS 239 (440)
Q Consensus 175 G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT--------------~eGi~Ai~~L~~~GI-~vN~TlIFS 239 (440)
..+++|++|..- +++.++.-++. |-.+|.|-|=.. ..-+++++.+.+.|| ++|+.++|.
T Consensus 138 ~e~tie~np~~l--t~e~l~~l~~a----G~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~G 211 (453)
T PRK09249 138 AEISIEIDPREL--DLEMLDALREL----GFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYG 211 (453)
T ss_pred CEEEEEecCCcC--CHHHHHHHHHc----CCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 479999999754 33444433332 223454444333 256789999999999 899999998
Q ss_pred -HHHHHHHHHHHHHHHHHcC
Q 036665 240 -LARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 240 -~~Qa~a~aqA~lagl~~aG 258 (440)
+.|-..-.+..++-+.+.|
T Consensus 212 lPgqt~e~~~~~l~~~~~l~ 231 (453)
T PRK09249 212 LPKQTPESFARTLEKVLELR 231 (453)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 4454444444444433445
No 37
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=58.06 E-value=1.1e+02 Score=31.63 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=49.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc--------------chHHHHHHHHHCCCc-eEEeecC
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA--------------PCVPSIKEVISQGIS-VNVTLIF 238 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~--------------eGi~Ai~~L~~~GI~-vN~TlIF 238 (440)
+-.+++|++|..-+ ++.++.-++ . |-.+|-|-|=... +-++|++.+.+.|+. +|+.+||
T Consensus 89 ~~eitiE~nP~~lt--~e~l~~lk~---~-G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~ 162 (353)
T PRK05904 89 NCEFTIECNPELIT--QSQINLLKK---N-KVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLY 162 (353)
T ss_pred CCeEEEEeccCcCC--HHHHHHHHH---c-CCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 34799999997653 233333332 1 2244555444332 568899999999996 9999999
Q ss_pred C-HHHHHHHHHHHHHHHHHcC
Q 036665 239 S-LARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 239 S-~~Qa~a~aqA~lagl~~aG 258 (440)
. +.|...-++.-+.-+.+.+
T Consensus 163 GlPgqt~e~~~~tl~~~~~l~ 183 (353)
T PRK05904 163 CLPILKLKDLDEVFNFILKHK 183 (353)
T ss_pred cCCCCCHHHHHHHHHHHHhcC
Confidence 8 4555544444444443445
No 38
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=55.94 E-value=2.3e+02 Score=28.51 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=45.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcch----HHHHHHHHHC-CCceEEeecCCHHHHHHHHHH
Q 036665 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPC----VPSIKEVISQ-GISVNVTLIFSLARYEEVIDA 249 (440)
Q Consensus 175 G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eG----i~Ai~~L~~~-GI~vN~TlIFS~~Qa~a~aqA 249 (440)
+++.+|+-+ ..|.+.+.+..+++.+. +-+-+.|=+-+..+| .+.++.+.+. +++|-+-.+.|++.+..+.++
T Consensus 116 ~~~~~ql~~--~~~~~~~~~~i~~~~~~-g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~ 192 (299)
T cd02809 116 GPRWFQLYV--PRDREITEDLLRRAEAA-GYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDA 192 (299)
T ss_pred CCeEEEEee--cCCHHHHHHHHHHHHHc-CCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHC
Confidence 678888843 23666666555554442 323344444333333 5678888876 899998888999887766654
No 39
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=55.03 E-value=94 Score=33.28 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=54.3
Q ss_pred HHHHHHHhHHhhhhcCCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCC--------------cchHHH
Q 036665 156 IQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPAT--------------APCVPS 221 (440)
Q Consensus 156 i~~a~d~l~p~~~~~~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT--------------~eGi~A 221 (440)
+.+.++.+...|... .+-.+++|.+|..- | ++.++..++. |-.+|-|-|-.. .+-+++
T Consensus 133 l~~ll~~i~~~~~l~--~~~eitiE~~p~~~-t-~e~l~~l~~a----GvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~ 204 (449)
T PRK09058 133 LARLITALREYLPLA--PDCEITLEGRINGF-D-DEKADAALDA----GANRFSIGVQSFNTQVRRRAGRKDDREEVLAR 204 (449)
T ss_pred HHHHHHHHHHhCCCC--CCCEEEEEeCcCcC-C-HHHHHHHHHc----CCCEEEecCCcCCHHHHHHhCCCCCHHHHHHH
Confidence 334444444444322 24579999999743 3 3344443331 224555555443 356788
Q ss_pred HHHHHHCC-CceEEeecCC-HHHHHHHHHHHHHHHHHcC
Q 036665 222 IKEVISQG-ISVNVTLIFS-LARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 222 i~~L~~~G-I~vN~TlIFS-~~Qa~a~aqA~lagl~~aG 258 (440)
++.+.+.| ++||+.+||. +.|...-.+.-++-+.+.|
T Consensus 205 i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (449)
T PRK09058 205 LEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLG 243 (449)
T ss_pred HHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcC
Confidence 89999999 8999999998 4454443433333333345
No 40
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=54.86 E-value=1.2e+02 Score=31.36 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=49.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc--------------chHHHHHHHHHCCCc-eEEeecCC
Q 036665 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA--------------PCVPSIKEVISQGIS-VNVTLIFS 239 (440)
Q Consensus 175 G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~--------------eGi~Ai~~L~~~GI~-vN~TlIFS 239 (440)
-.+++|++|..- +++.++..+++ |-.+|-|-|.... +-++|++.+.+.||. ||+.+||.
T Consensus 86 ~eitie~~p~~~--t~e~l~~l~~~----G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~G 159 (374)
T PRK05799 86 LEFTVEGNPGTF--TEEKLKILKSM----GVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFG 159 (374)
T ss_pred CEEEEEeCCCcC--CHHHHHHHHHc----CCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Confidence 379999998653 33444444432 2345656655544 457788999999996 99999999
Q ss_pred H-HHHHHHHHHHHHHHHHcC
Q 036665 240 L-ARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 240 ~-~Qa~a~aqA~lagl~~aG 258 (440)
+ .|-..-.+..+.-+.+.|
T Consensus 160 lPgqt~e~~~~~l~~~~~l~ 179 (374)
T PRK05799 160 LPNQTLEDWKETLEKVVELN 179 (374)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 5 565554555444443445
No 41
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=54.78 E-value=1.5e+02 Score=30.45 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=45.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCC--------------cchHHHHHHHHHCCCc-eEEeecCC
Q 036665 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPAT--------------APCVPSIKEVISQGIS-VNVTLIFS 239 (440)
Q Consensus 175 G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT--------------~eGi~Ai~~L~~~GI~-vN~TlIFS 239 (440)
-.+++|++|..- + ++.++.-++. |-.+|-|-|=.. .+-++|++.+.+.|+. ||+.+||.
T Consensus 85 ~eitiE~nP~~~-~-~e~l~~l~~~----GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~G 158 (350)
T PRK08446 85 CEITTEANPNSA-T-KAWLKGMKNL----GVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYD 158 (350)
T ss_pred ceEEEEeCCCCC-C-HHHHHHHHHc----CCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 479999999643 2 3334333322 223444444332 3668899999999995 99999996
Q ss_pred -HHHHHHHHHHHHHHHHHcC
Q 036665 240 -LARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 240 -~~Qa~a~aqA~lagl~~aG 258 (440)
+.|...-.+.-++-+.+.|
T Consensus 159 lPgqt~~~~~~~l~~~~~l~ 178 (350)
T PRK08446 159 TPLDNKKLLKEELKLAKELP 178 (350)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 3343333333333333345
No 42
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.55 E-value=86 Score=31.48 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=56.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEc-------CCCcc-----hHHHHHHHHH-CCCceEEeecCCH
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKI-------PATAP-----CVPSIKEVIS-QGISVNVTLIFSL 240 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKI-------PaT~e-----Gi~Ai~~L~~-~GI~vN~TlIFS~ 240 (440)
.|++.+=+-|...+|.+.+++-|++|.+. +-.+|.|= |-.+. |++.++++.. .||++ +|-+|+.
T Consensus 25 ~~~~~~iaGPCsie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~-~te~~d~ 101 (266)
T PRK13398 25 GEEKIIIAGPCAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPV-VTEVMDT 101 (266)
T ss_pred CCCEEEEEeCCcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCE-EEeeCCh
Confidence 35888999999999999999999999996 35677776 65554 5666666654 59999 7889999
Q ss_pred HHHHHHHH
Q 036665 241 ARYEEVID 248 (440)
Q Consensus 241 ~Qa~a~aq 248 (440)
.++..+.+
T Consensus 102 ~~~~~l~~ 109 (266)
T PRK13398 102 RDVEEVAD 109 (266)
T ss_pred hhHHHHHH
Confidence 98765544
No 43
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=52.02 E-value=1.3e+02 Score=31.92 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=52.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCC--------------cchHHHHHHHHHCCCc-eEEeecCC-
Q 036665 176 YVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPAT--------------APCVPSIKEVISQGIS-VNVTLIFS- 239 (440)
Q Consensus 176 ~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT--------------~eGi~Ai~~L~~~GI~-vN~TlIFS- 239 (440)
.+++|++|..- +++.++..+++ |-.+|-|-|-.. .+-+++++.|.+.|+. +|+.+||.
T Consensus 129 eitiE~~P~~l--t~e~l~~l~~~----G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~Gl 202 (430)
T PRK08208 129 PKSVETSPATT--TAEKLALLAAR----GVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGI 202 (430)
T ss_pred eEEEEeCcCcC--CHHHHHHHHHc----CCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC
Confidence 69999999754 33455444442 223444444444 3568899999999997 69999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccceEEeech
Q 036665 240 LARYEEVIDAYLDGLEASGLSDLSRVTSVASFFV 273 (440)
Q Consensus 240 ~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfV 273 (440)
+.|...-.+.-++-+.+.| ...++.|.
T Consensus 203 P~qt~e~~~~~l~~~~~l~-------~~~is~y~ 229 (430)
T PRK08208 203 PGQTHASWMESLDQALVYR-------PEELFLYP 229 (430)
T ss_pred CCCCHHHHHHHHHHHHhCC-------CCEEEEcc
Confidence 5565444444444333345 34556664
No 44
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=49.35 E-value=1.5e+02 Score=30.52 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=47.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCC--------------cchHHHHHHHHHCCC-ceEEeecC
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPAT--------------APCVPSIKEVISQGI-SVNVTLIF 238 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT--------------~eGi~Ai~~L~~~GI-~vN~TlIF 238 (440)
+..+++|++|..- | ++.++.-+++ |-.+|-|-|-+- ..-++|++.+.+.|+ +||+.+||
T Consensus 86 ~~eitie~np~~l-t-~e~l~~l~~~----Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 86 DCEITTEANPELI-T-AEWCKGLKGA----GINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred CCEEEEEeCCCCC-C-HHHHHHHHHc----CCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
Confidence 3579999999764 2 2333333322 223444444332 256889999999999 59999999
Q ss_pred CH-HHHHHHHHHHHHHHHHcC
Q 036665 239 SL-ARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 239 S~-~Qa~a~aqA~lagl~~aG 258 (440)
.+ .|-..-.+..+.-+.+.|
T Consensus 160 GlPgqt~~~~~~~l~~~~~l~ 180 (360)
T TIGR00539 160 GLPLQTLNSLKEELKLAKELP 180 (360)
T ss_pred CCCCCCHHHHHHHHHHHHccC
Confidence 85 555444444333333345
No 45
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=47.58 E-value=1.7e+02 Score=30.19 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=46.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcC--------------CCcchHHHHHHHHHCCCc-eEEeecCC-
Q 036665 176 YVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIP--------------ATAPCVPSIKEVISQGIS-VNVTLIFS- 239 (440)
Q Consensus 176 ~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIP--------------aT~eGi~Ai~~L~~~GI~-vN~TlIFS- 239 (440)
.+++|++|..- | ++.++.-+++ |-.+|-|-|- ...+-++|++.+.+.||. ||+.+||.
T Consensus 96 e~t~e~~p~~i-~-~e~l~~l~~~----G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~Gl 169 (375)
T PRK05628 96 EVTTEANPEST-S-PEFFAALRAA----GFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGT 169 (375)
T ss_pred EEEEEeCCCCC-C-HHHHHHHHHc----CCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccC
Confidence 78999998643 2 2333333221 2234444333 333567899999999998 99999996
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 036665 240 LARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 240 ~~Qa~a~aqA~lagl~~aG 258 (440)
+.|...-.+.-+.-+.+.|
T Consensus 170 Pgqt~~~~~~tl~~~~~l~ 188 (375)
T PRK05628 170 PGESDDDWRASLDAALEAG 188 (375)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 5555544444444333345
No 46
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=46.03 E-value=2e+02 Score=30.24 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=56.1
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcC--CCcE--EEEc----CCC-------------------cchHHHHH
Q 036665 171 NGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVN--RPNV--YIKI----PAT-------------------APCVPSIK 223 (440)
Q Consensus 171 ~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~--r~nv--~IKI----PaT-------------------~eGi~Ai~ 223 (440)
.|.+.++-+=+-|.-.+|.+..++-|++|.++.. ++++ ++++ |=| .+||+.++
T Consensus 48 ~g~d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R 127 (349)
T PRK09261 48 HGKDDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIAR 127 (349)
T ss_pred cCCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHHHHHH
Confidence 4788999999999999999999999999988621 1222 2222 333 47999999
Q ss_pred HH----HHCCCceEEeecCCHHHHHHHHH
Q 036665 224 EV----ISQGISVNVTLIFSLARYEEVID 248 (440)
Q Consensus 224 ~L----~~~GI~vN~TlIFS~~Qa~a~aq 248 (440)
+| .+.|++| +|=+..+.+..-+++
T Consensus 128 ~ll~~~~e~Glpv-atE~ld~~~~~y~~d 155 (349)
T PRK09261 128 KLLLDINELGLPA-ATEFLDPITPQYIAD 155 (349)
T ss_pred HHHHHHHHhCCCe-EEEecccccHHHHHh
Confidence 88 5569999 777777666544444
No 47
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=45.92 E-value=1.1e+02 Score=30.99 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHH---HHHHhhcCCC-cEEEEc----------CCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHHHH
Q 036665 185 LADDTQGTVEAA---KWLHKVVNRP-NVYIKI----------PATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAY 250 (440)
Q Consensus 185 la~D~e~~v~eA---~~L~~~v~r~-nv~IKI----------PaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA~ 250 (440)
-+++.++-|.-| |++....+.+ .=+||+ |-.-|-++|.++|.++|..|.-..-=.+-=+..+
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rL---- 154 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHL---- 154 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHH----
Confidence 367777777766 4433211111 336775 4444889999999999999876665555433333
Q ss_pred HHHHHHcCCCCCCccceEEeechhhh
Q 036665 251 LDGLEASGLSDLSRVTSVASFFVSRV 276 (440)
Q Consensus 251 lagl~~aG~~~~~~vasviSpfVgRi 276 (440)
+.+| |..+=|.-+-|
T Consensus 155 ----ed~G-------c~aVMPlgsPI 169 (267)
T CHL00162 155 ----EDIG-------CATVMPLGSPI 169 (267)
T ss_pred ----HHcC-------CeEEeeccCcc
Confidence 3458 77777765554
No 48
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=44.70 E-value=2e+02 Score=28.63 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=58.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc------chH----------HHHHHHHHCCCceEEeec
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA------PCV----------PSIKEVISQGISVNVTLI 237 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~------eGi----------~Ai~~L~~~GI~vN~TlI 237 (440)
..++-+|..| +++|++-|.++ +|.-+-=||-.+ -|+ ++++.|.+.||.|-+..=
T Consensus 62 ~~~lNlE~a~-----t~em~~ia~~~-----kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiD 131 (234)
T cd00003 62 RTELNLEMAP-----TEEMLEIALEV-----KPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFID 131 (234)
T ss_pred CCCEEeccCC-----CHHHHHHHHHC-----CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4578888865 78999999875 577666788644 444 458899999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhh
Q 036665 238 FSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRV 276 (440)
Q Consensus 238 FS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRi 276 (440)
=.++|..++.+. | +..|=.+-|..
T Consensus 132 Pd~~qi~~A~~~--------G-------Ad~VELhTG~Y 155 (234)
T cd00003 132 PDPEQIEAAKEV--------G-------ADRVELHTGPY 155 (234)
T ss_pred CCHHHHHHHHHh--------C-------cCEEEEechhh
Confidence 899997766554 7 66777776665
No 49
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=43.43 E-value=70 Score=32.02 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=72.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEc----------CCCcchHHHHHHHHHCCCceEEeecCCHHHHHHH
Q 036665 177 VSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKI----------PATAPCVPSIKEVISQGISVNVTLIFSLARYEEV 246 (440)
Q Consensus 177 VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKI----------PaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~ 246 (440)
+.+=-|-.-+++.++-|.-|+--.+.. ..=+||+ |-..+-++|+++|.++|..|.-..-=.+-=+..+
T Consensus 63 ~~lLPNTaGc~tA~EAv~~A~laRe~~--~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL 140 (247)
T PF05690_consen 63 YTLLPNTAGCRTAEEAVRTARLAREAF--GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRL 140 (247)
T ss_dssp SEEEEE-TT-SSHHHHHHHHHHHHHTT--S-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHH
T ss_pred CEECCcCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHH
Confidence 444445556889999998887655553 3456786 4455889999999999999977766666543333
Q ss_pred HHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhc
Q 036665 247 IDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKK 326 (440)
Q Consensus 247 aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~ 326 (440)
+.+| |..+=|.-+-|-. . +|..--.+.+.+.+. .
T Consensus 141 --------~d~G-------caavMPlgsPIGS-----------g-----~Gi~n~~~l~~i~~~---------------~ 174 (247)
T PF05690_consen 141 --------EDAG-------CAAVMPLGSPIGS-----------G-----RGIQNPYNLRIIIER---------------A 174 (247)
T ss_dssp --------HHTT--------SEBEEBSSSTTT-------------------SSTHHHHHHHHHH---------------G
T ss_pred --------HHCC-------CCEEEeccccccc-----------C-----cCCCCHHHHHHHHHh---------------c
Confidence 3458 6676776555422 1 121111222333332 2
Q ss_pred CCccceeeeeeccccCCCCCchhhhhhhcCCCeeccCcH
Q 036665 327 GAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPD 365 (440)
Q Consensus 327 G~~~qrlL~ASTsvKn~~~~~~~~v~~L~G~d~v~TiP~ 365 (440)
.. +-|+=| |+-.|++ .......|+|.| -+.-
T Consensus 175 ~v--PvIvDA--GiG~pSd---aa~AMElG~daV-LvNT 205 (247)
T PF05690_consen 175 DV--PVIVDA--GIGTPSD---AAQAMELGADAV-LVNT 205 (247)
T ss_dssp SS--SBEEES-----SHHH---HHHHHHTT-SEE-EESH
T ss_pred CC--cEEEeC--CCCCHHH---HHHHHHcCCcee-ehhh
Confidence 33 246666 8888765 455558999998 4443
No 50
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=43.40 E-value=2e+02 Score=29.90 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=40.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEc--------------CCCcchHHHHHHHHHCCCceEEeecCC-
Q 036665 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKI--------------PATAPCVPSIKEVISQGISVNVTLIFS- 239 (440)
Q Consensus 175 G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKI--------------PaT~eGi~Ai~~L~~~GI~vN~TlIFS- 239 (440)
..|++|++|.-- +. +.++.-++. |=.+|-|-| ....+-++|++.+.+.+++||+.+||.
T Consensus 91 ~eit~E~~P~~i-~~-e~L~~l~~~----GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~Gl 164 (380)
T PRK09057 91 IEITLEANPTSV-EA-GRFRGYRAA----GVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYAR 164 (380)
T ss_pred ccEEEEECcCcC-CH-HHHHHHHHc----CCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCC
Confidence 479999999643 22 333322221 112333333 233467888988888899999999999
Q ss_pred HHHHH
Q 036665 240 LARYE 244 (440)
Q Consensus 240 ~~Qa~ 244 (440)
+.|..
T Consensus 165 Pgqt~ 169 (380)
T PRK09057 165 PGQTL 169 (380)
T ss_pred CCCCH
Confidence 45554
No 51
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=42.85 E-value=1.9e+02 Score=28.40 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHHHHC--CCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCC
Q 036665 186 ADDTQGTVEAAKWLHKVVNRPNVYIKIPAT-APCVPSIKEVISQ--GISVNVTLIFSLARYEEVIDAYLDGLEASGLSDL 262 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~v~r~nv~IKIPaT-~eGi~Ai~~L~~~--GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~ 262 (440)
..+.|+.+..++.|++. -==.|-||-+ +...++|++|.++ ++-+=+-.|.+++|+.++++| |
T Consensus 21 ~~~~e~a~~~a~Ali~g---Gi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~a--------G---- 85 (211)
T COG0800 21 GDDVEEALPLAKALIEG---GIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAA--------G---- 85 (211)
T ss_pred eCCHHHHHHHHHHHHHc---CCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHc--------C----
Confidence 68999999999999985 2235666654 5678999999875 577778889999998877765 6
Q ss_pred CccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCCccceeeeeeccccC
Q 036665 263 SRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKN 342 (440)
Q Consensus 263 ~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn 342 (440)
...++||-+.+= +-+.....+.+ -.||. ....++...++ .|++.-|+.=|+ .+-.
T Consensus 86 --a~fiVsP~~~~e---v~~~a~~~~ip---~~PG~---~TptEi~~Ale-------------~G~~~lK~FPa~-~~Gg 140 (211)
T COG0800 86 --AQFIVSPGLNPE---VAKAANRYGIP---YIPGV---ATPTEIMAALE-------------LGASALKFFPAE-VVGG 140 (211)
T ss_pred --CCEEECCCCCHH---HHHHHHhCCCc---ccCCC---CCHHHHHHHHH-------------cChhheeecCcc-ccCc
Confidence 257889976542 22222222222 34564 33344444432 477766666663 2223
Q ss_pred CCCCchhhhhhhcCCCee-c-----cCcHHHHHHHHhCC
Q 036665 343 PAYPDTLYVAPLIGPDTV-S-----TMPDQALQAFVDHG 375 (440)
Q Consensus 343 ~~~~~~~~v~~L~G~d~v-~-----TiP~~~l~al~~~~ 375 (440)
+ .|+.++.|+-.- . -+.++-+.++...|
T Consensus 141 ~-----~~~ka~~gP~~~v~~~pTGGVs~~N~~~yla~g 174 (211)
T COG0800 141 P-----AMLKALAGPFPQVRFCPTGGVSLDNAADYLAAG 174 (211)
T ss_pred H-----HHHHHHcCCCCCCeEeecCCCCHHHHHHHHhCC
Confidence 2 356666666431 0 13456666666666
No 52
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=41.29 E-value=1.7e+02 Score=30.53 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=67.0
Q ss_pred HHHHHh-CCCCccccChHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCccEEEE
Q 036665 102 LLPLIA-SGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVE 180 (440)
Q Consensus 102 l~~li~-~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di~~a~d~l~p~~~~~~g~~G~VS~E 180 (440)
..++++ .|++-+-+--|+..-.+. |.+- ...+.+++. ..++..+ .|.+..+++=
T Consensus 47 sA~i~d~aGvD~ILVGDSlgmv~lG----~~~T------~~Vtld~mi-----~H~~aV~----------Rga~~a~vVa 101 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDSAAMVVHG----HDTT------LPITLDEML-----VHCRAVA----------RGANRPLLVG 101 (332)
T ss_pred HHHHHHHcCCCEEEECCcHHHHhcC----CCCC------CCcCHHHHH-----HHHHHHh----------ccCCCCEEEe
Confidence 456665 589888888887765432 1100 012233321 1222222 3445566663
Q ss_pred ecCCCCC--CHHHHHHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHHHHCCCceE
Q 036665 181 VSPRLAD--DTQGTVEAAKWLHKVVNRPNVYIKIPAT-APCVPSIKEVISQGISVN 233 (440)
Q Consensus 181 VdP~la~--D~e~~v~eA~~L~~~v~r~nv~IKIPaT-~eGi~Ai~~L~~~GI~vN 233 (440)
=-|..++ +.|..++.|.+|.+.. .=..|||=.. .+-+++++.|...||+|.
T Consensus 102 DmPfgSY~~s~e~av~nA~rl~~ea--Ga~aVKlEGg~~~~~~~I~~l~~~GIPV~ 155 (332)
T PLN02424 102 DLPFGSYESSTDQAVESAVRMLKEG--GMDAVKLEGGSPSRVTAAKAIVEAGIAVM 155 (332)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh--CCcEEEECCCcHHHHHHHHHHHHcCCCEE
Confidence 3366644 7899999999997642 3578999988 677899999999999998
No 53
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=39.71 E-value=2.2e+02 Score=30.43 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=48.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc--------------chHHHHHHHHHCCCc-eEEeecCC
Q 036665 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA--------------PCVPSIKEVISQGIS-VNVTLIFS 239 (440)
Q Consensus 175 G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~--------------eGi~Ai~~L~~~GI~-vN~TlIFS 239 (440)
-.+++|++|..- +++.++.-++. |-.+|.|.|=... .-++|++.|.+.||. ||+.+||.
T Consensus 138 ~eitie~np~~l--~~e~l~~lk~~----G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~G 211 (455)
T TIGR00538 138 AEISIEIDPRYI--TKDVIDALRDE----GFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYG 211 (455)
T ss_pred CeEEEEeccCcC--CHHHHHHHHHc----CCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEee
Confidence 479999998653 23444443332 2345555544433 357899999999995 99999998
Q ss_pred -HHHHHHHHHHHHHHHHHcC
Q 036665 240 -LARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 240 -~~Qa~a~aqA~lagl~~aG 258 (440)
+.|-..-++.-++-+.+.|
T Consensus 212 lPgqt~e~~~~tl~~~~~l~ 231 (455)
T TIGR00538 212 LPKQTKESFAKTLEKVAELN 231 (455)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 4455544444444433345
No 54
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=39.69 E-value=60 Score=34.74 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=72.3
Q ss_pred CCccccChHHHHHHHhCCcchHHHHHHHHHcCCCh---HHHHHH----HHHHHHHHHHHHhHHhhhhcCCCCccEEEEec
Q 036665 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDI---EAAYWE----LVIKDIQDACKLFESIYDETNGGDGYVSVEVS 182 (440)
Q Consensus 110 v~GvTTNPsI~~kAi~~~~~Y~~~i~~l~~~g~~~---~e~y~~----L~i~di~~a~d~l~p~~~~~~g~~G~VS~EVd 182 (440)
+-|.+.-|.+=.. ...|.++.-++...|.+. +|.+.. -.-+-+....+++.-..++++...+| -++
T Consensus 157 LlgtivKPklGl~----~e~~a~~~yE~~~GGvD~iKDDEnl~s~~f~~~e~R~~~~m~~i~~aeaeTGekk~y---~~N 229 (429)
T COG1850 157 LLGTIVKPKLGLS----PEEYAELAYELLSGGVDFIKDDENLTSPPFNRFEERVAKIMEAIDKAEAETGEKKMY---AVN 229 (429)
T ss_pred ccccccCcccCCC----HHHHHHHHHHHHhcCcceecchhhccCcccccHHHHHHHHHHHHHHHHHhhCceEEE---Eee
Confidence 4666777766544 367899999999888652 221100 00111222333344444555433333 333
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHHHHCCCceEE
Q 036665 183 PRLADDTQGTVEAAKWLHKVVNRPNVYIKIPAT-APCVPSIKEVISQGISVNV 234 (440)
Q Consensus 183 P~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT-~eGi~Ai~~L~~~GI~vN~ 234 (440)
+..++++|++.|+...++ |.+-+||-|=+| |.+++.+++....|+.+.+
T Consensus 230 --ITa~~~EM~rrae~a~el-G~~~~midi~~~G~~a~q~lre~~d~gl~iha 279 (429)
T COG1850 230 --ITAPCEEMMRRAELAAEL-GANYVMIDIVVTGFTALQYLREDEDIGLAIHA 279 (429)
T ss_pred --ccCCHHHHHHHHHHHHHc-CCCEEEEEEEecccHHHHHHHhcccCCceEEe
Confidence 566799999999877775 668899999888 7888888888666776654
No 55
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=38.86 E-value=3.3e+02 Score=28.10 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=47.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc--------------chHHHHHHHHHCCCc-eEEeecCC
Q 036665 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA--------------PCVPSIKEVISQGIS-VNVTLIFS 239 (440)
Q Consensus 175 G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~--------------eGi~Ai~~L~~~GI~-vN~TlIFS 239 (440)
..+++|++|..- | ++.++.-++. |-.+|-|-|-... +-+++++.+.+.|++ ||+.+||.
T Consensus 87 ~eit~e~~p~~l-~-~e~l~~l~~~----G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~G 160 (377)
T PRK08599 87 EEFTFEANPGDL-T-KEKLQVLKDS----GVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYA 160 (377)
T ss_pred CEEEEEeCCCCC-C-HHHHHHHHHc----CCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecC
Confidence 379999999643 2 2333333321 2234445444432 568899999999997 89999998
Q ss_pred H-HHHHHHHHHHHHHHHHcC
Q 036665 240 L-ARYEEVIDAYLDGLEASG 258 (440)
Q Consensus 240 ~-~Qa~a~aqA~lagl~~aG 258 (440)
+ .|...-.+.-++-+.+.|
T Consensus 161 lPgqt~~~~~~~l~~~~~l~ 180 (377)
T PRK08599 161 LPGQTIEDFKESLAKALALD 180 (377)
T ss_pred CCCCCHHHHHHHHHHHHccC
Confidence 5 555444444444433344
No 56
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=38.80 E-value=2.7e+02 Score=29.15 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=43.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCC--------------CcchHHHHHHHHHCCCceEEeecCCH
Q 036665 175 GYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPA--------------TAPCVPSIKEVISQGISVNVTLIFSL 240 (440)
Q Consensus 175 G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPa--------------T~eGi~Ai~~L~~~GI~vN~TlIFS~ 240 (440)
-.|++|.+|..-. . +.-+.|.+. |-.+|-|.|=. ..+-.++++.+.+.+.++|+.+||.+
T Consensus 109 ~eit~E~~p~~~~-~----e~L~~l~~~-GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~Gl 182 (394)
T PRK08898 109 AEITLEANPGTFE-A----EKFAQFRAS-GVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYAL 182 (394)
T ss_pred CeEEEEECCCCCC-H----HHHHHHHHc-CCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 5899999997543 2 222333332 22445554433 33567788887878899999999996
Q ss_pred -HHHHHHHHH
Q 036665 241 -ARYEEVIDA 249 (440)
Q Consensus 241 -~Qa~a~aqA 249 (440)
.|...-..+
T Consensus 183 Pgqt~~~~~~ 192 (394)
T PRK08898 183 PGQTLDEALA 192 (394)
T ss_pred CCCCHHHHHH
Confidence 554444443
No 57
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=38.47 E-value=2.6e+02 Score=29.03 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=44.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCC--------------cchHHHHHHHHHCCCc-eEEeecC
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPAT--------------APCVPSIKEVISQGIS-VNVTLIF 238 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT--------------~eGi~Ai~~L~~~GI~-vN~TlIF 238 (440)
...|++|++|..- | ++.++.-++. |-.++-|-|-+. .+-++|++.+.+.|+. ||+.+||
T Consensus 89 ~~eit~E~~P~~~-~-~~~l~~l~~~----G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~ 162 (370)
T PRK06294 89 ATEITLEANPENL-S-ESYIRALALT----GINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIY 162 (370)
T ss_pred CCeEEEEeCCCCC-C-HHHHHHHHHC----CCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 4579999999754 2 3334433332 223444444433 3567899999999995 9999999
Q ss_pred C-HHHHHHHHHH
Q 036665 239 S-LARYEEVIDA 249 (440)
Q Consensus 239 S-~~Qa~a~aqA 249 (440)
. +.|-..-.+.
T Consensus 163 GlPgqt~~~~~~ 174 (370)
T PRK06294 163 GLPTQSLSDFIV 174 (370)
T ss_pred CCCCCCHHHHHH
Confidence 9 5555443333
No 58
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=37.69 E-value=1.2e+02 Score=32.16 Aligned_cols=126 Identities=25% Similarity=0.250 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHH-HHHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 036665 186 ADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKE-VISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSR 264 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~-L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~ 264 (440)
-++.|++.+.-.+|.+.-++..|-||+++.. ++..+.. ..+.|..+ +| |-.. -|
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~-~~~~~~~~~~~ag~D~-It-IDG~----------------~G------ 238 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGR-GVEDIAAGAAKAGADF-IT-IDGA----------------EG------ 238 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-ST-THHHHHHHHHHTT-SE-EE-EE-T----------------T-------
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCC-cHHHHHHhhhhccCCE-EE-EeCC----------------CC------
Confidence 4678888888888888766789999998865 4443333 22233221 00 0000 01
Q ss_pred cceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCCccceeeeeeccccCCC
Q 036665 265 VTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPA 344 (440)
Q Consensus 265 vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ASTsvKn~~ 344 (440)
.+=+||-.. +|.+ .+|-..++.. +++. |.+.|.+..=-|++|.+++++.
T Consensus 239 -GTGAap~~~-~d~~--------------GlP~~~~l~~---a~~~------------L~~~glr~~V~Li~sGgl~t~~ 287 (368)
T PF01645_consen 239 -GTGAAPLTS-MDHV--------------GLPTEYALAR---AHQA------------LVKNGLRDRVSLIASGGLRTGD 287 (368)
T ss_dssp ---SSEECCH-HHHC-----------------HHHHHHH---HHHH------------HHCTT-CCCSEEEEESS--SHH
T ss_pred -CCCCCchhH-HhhC--------------CCcHHHHHHH---HHHH------------HHHcCCCCceEEEEeCCccCHH
Confidence 011244322 1222 1222333433 4443 4457877655688999999975
Q ss_pred CCchhhhhhhcCCCeeccCcHHHHHHH
Q 036665 345 YPDTLYVAPLIGPDTVSTMPDQALQAF 371 (440)
Q Consensus 345 ~~~~~~v~~L~G~d~v~TiP~~~l~al 371 (440)
++.....+|+|.| -+.-..|-++
T Consensus 288 ---dv~kalaLGAD~v-~igt~~liAl 310 (368)
T PF01645_consen 288 ---DVAKALALGADAV-YIGTAALIAL 310 (368)
T ss_dssp ---HHHHHHHCT-SEE-E-SHHHHHHC
T ss_pred ---HHHHHHhcCCCee-Eecchhhhhc
Confidence 4677889999999 5555555444
No 59
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=36.75 E-value=2.1e+02 Score=32.86 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcE-EEEc---CCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCC
Q 036665 187 DDTQGTVEAAKWLHKVVNRPNV-YIKI---PATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDL 262 (440)
Q Consensus 187 ~D~e~~v~eA~~L~~~v~r~nv-~IKI---PaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~ 262 (440)
.+.+.+.+-.++..+.. |++ .|-| |--.+|--++.+|. |++ +..-+|++.+..+| .++
T Consensus 206 ~~~~~~~~~~~~~~~~~--p~~~~i~v~g~~~~eaGAt~~QELA-----------~aL----A~~~~yl~~l~~~G-l~~ 267 (714)
T PRK09426 206 PSMRIIADIFAYTSQNM--PKFNSISISGYHMQEAGATADLELA-----------YTL----ADGREYVRAGLAAG-LDI 267 (714)
T ss_pred hhHHHHHHHHHHHHHhC--CCCeEEEEechhhhhcCCCHHHHHH-----------HHH----HHHHHHHHHHHHcC-CCH
Confidence 34445555554444432 332 2222 33346666666664 233 44557888777777 677
Q ss_pred CccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCCccce----eeeeec
Q 036665 263 SRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQR----LLWAST 338 (440)
Q Consensus 263 ~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qr----lL~AST 338 (440)
+.++.=++++++==.+++... +=+.-++.+|..- ++++|.++.+ -+.|.|
T Consensus 268 ~~~a~~i~F~~~~g~d~F~eI---------------AKlRA~R~LWa~i-----------~~~~G~~~~~~~~~~~ha~T 321 (714)
T PRK09426 268 DDFAPRLSFFWAIGMNFFMEI---------------AKLRAARLLWAKI-----------VKQFGPKNPKSLALRTHCQT 321 (714)
T ss_pred HHHhcceEEEEEcCchHHHHH---------------HHHHHHHHHHHHH-----------HHHhCCCChhhhCceEEEEe
Confidence 777777787776544442211 1122233343332 3345665322 366778
Q ss_pred cccCCCCCch----------hhhhhhcCCCeeccCcHH
Q 036665 339 SVKNPAYPDT----------LYVAPLIGPDTVSTMPDQ 366 (440)
Q Consensus 339 svKn~~~~~~----------~~v~~L~G~d~v~TiP~~ 366 (440)
|-++....|. .+...+=|+|+|++.|.+
T Consensus 322 s~~~~T~~DP~vN~LR~T~ea~aA~lGGadsl~v~pfD 359 (714)
T PRK09426 322 SGWSLTEQDPYNNVVRTTIEAMAATLGGTQSLHTNALD 359 (714)
T ss_pred CCcccchhcchhhHHHHHHHHHHHHhcCCCccccCcch
Confidence 8887654333 123447899999777765
No 60
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=36.59 E-value=3.8e+02 Score=28.33 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=53.9
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcC--CCcEE--EEc----CCC-------------------cchHHHHH
Q 036665 171 NGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVN--RPNVY--IKI----PAT-------------------APCVPSIK 223 (440)
Q Consensus 171 ~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~--r~nv~--IKI----PaT-------------------~eGi~Ai~ 223 (440)
.|.|.+.-+=+-|.-.+|.+..++-|++|.++.. +++++ +++ |=| .+||+.++
T Consensus 49 ~g~d~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R 128 (353)
T PRK12755 49 HGRDDRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIAR 128 (353)
T ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHH
Confidence 4788999999999999999999999999988621 12222 221 333 47888877
Q ss_pred HH----HHCCCceEEeecCCHHHHHHHHH
Q 036665 224 EV----ISQGISVNVTLIFSLARYEEVID 248 (440)
Q Consensus 224 ~L----~~~GI~vN~TlIFS~~Qa~a~aq 248 (440)
.| .+.|+++ +|=+..+.+..-+++
T Consensus 129 ~ll~~~~e~Glp~-atE~ld~~~~~y~~D 156 (353)
T PRK12755 129 KLLLDLVELGLPL-ATEALDPISPQYLGD 156 (353)
T ss_pred HHHHHHHHhCCCE-EEEecCcccHHHHHh
Confidence 77 4569999 666666655444333
No 61
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=35.31 E-value=3.4e+02 Score=28.55 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=40.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCC--------------cchHHHHHHHHHCCCceEEeecCC
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPAT--------------APCVPSIKEVISQGISVNVTLIFS 239 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT--------------~eGi~Ai~~L~~~GI~vN~TlIFS 239 (440)
...|++|++|..- +. +..+.|.+. |-.+|-|-|=.. .+.++|++.+.+.+++||+.+||.
T Consensus 97 ~~eitiE~nP~~~-~~----e~l~~l~~~-GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~G 170 (390)
T PRK06582 97 QTEITLETNPTSF-ET----EKFKAFKLA-GINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYA 170 (390)
T ss_pred CCEEEEEeCCCcC-CH----HHHHHHHHC-CCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecC
Confidence 3479999999643 32 222233332 223444444333 367888888887799999999999
Q ss_pred HH
Q 036665 240 LA 241 (440)
Q Consensus 240 ~~ 241 (440)
++
T Consensus 171 lP 172 (390)
T PRK06582 171 RS 172 (390)
T ss_pred CC
Confidence 86
No 62
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=34.58 E-value=2.2e+02 Score=28.65 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEEc----------CCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHHHHHHHHH
Q 036665 186 ADDTQGTVEAAKWLHKVVNRPNVYIKI----------PATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE 255 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~v~r~nv~IKI----------PaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~ 255 (440)
+++.|+-|.-|+--.+.. ..=+||+ |-.-+-++|+|+|.++|..|.-..-=.+-=+ +-|+
T Consensus 79 c~taeEAv~tArlARE~~--~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~a--------rrLe 148 (262)
T COG2022 79 CRTAEEAVRTARLAREAL--GTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLA--------RRLE 148 (262)
T ss_pred cCCHHHHHHHHHHHHHHc--cCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHH--------HHHH
Confidence 577777777776444433 2445664 6666899999999999998865444444322 2344
Q ss_pred HcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHHhcCCccceeee
Q 036665 256 ASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLW 335 (440)
Q Consensus 256 ~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~~~G~~~qrlL~ 335 (440)
.+| |..+=|.-+-| |+. .|..--.+.+.+.+. ++.+-|+=
T Consensus 149 e~G-------caavMPl~aPI-----------GSg-----~G~~n~~~l~iiie~-----------------a~VPviVD 188 (262)
T COG2022 149 EAG-------CAAVMPLGAPI-----------GSG-----LGLQNPYNLEIIIEE-----------------ADVPVIVD 188 (262)
T ss_pred hcC-------ceEeccccccc-----------cCC-----cCcCCHHHHHHHHHh-----------------CCCCEEEe
Confidence 468 66766755444 211 222112222223332 23444666
Q ss_pred eeccccCCCCCchhhhhhhcCCCee
Q 036665 336 ASTSVKNPAYPDTLYVAPLIGPDTV 360 (440)
Q Consensus 336 ASTsvKn~~~~~~~~v~~L~G~d~v 360 (440)
| |+-.|++. -.....|||.|
T Consensus 189 A--GiG~pSdA---a~aMElG~DaV 208 (262)
T COG2022 189 A--GIGTPSDA---AQAMELGADAV 208 (262)
T ss_pred C--CCCChhHH---HHHHhccccee
Confidence 6 88888763 33447899998
No 63
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=33.54 E-value=17 Score=24.75 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.2
Q ss_pred ccHHHHHhCCCCccccC
Q 036665 100 TDLLPLIASGVRGVTSN 116 (440)
Q Consensus 100 ~el~~li~~Gv~GvTTN 116 (440)
..++.+++.|++|+.||
T Consensus 11 ~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 11 ASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHcCCCEeeCC
Confidence 46889999999999998
No 64
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=33.36 E-value=2.4e+02 Score=27.67 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhHHhhhhcCC------CCc-cEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc---------
Q 036665 153 IKDIQDACKLFESIYDETNG------GDG-YVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA--------- 216 (440)
Q Consensus 153 i~di~~a~d~l~p~~~~~~g------~~G-~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~--------- 216 (440)
.+||..+++++.-+=. .+. .+| -|-+|- ..-|++||+.+-.|.. -++.-|+||+|-..
T Consensus 96 ~~Di~~g~~ia~~lg~-lDiGQ~vVV~~g~VlAVEa----~EGTD~~i~R~~~l~~-~~~~~VlvK~~Kp~QD~R~DlPt 169 (214)
T PF06230_consen 96 LADIEFGFEIAKALGR-LDIGQAVVVKDGRVLAVEA----IEGTDAMIRRAGELRG-KGKGGVLVKVPKPGQDLRFDLPT 169 (214)
T ss_pred HHHHHHHHHHHHHhcc-cCCCceEEEECCEEEEEec----cccHHHHHHHHHHhcC-CCCCEEEEEccCCCCcccccccc
Confidence 3677666665443221 111 123 355676 6899999999999877 23467999999887
Q ss_pred chHHHHHHHHHCCCceEE-----eecCCHHHHHHHHHH
Q 036665 217 PCVPSIKEVISQGISVNV-----TLIFSLARYEEVIDA 249 (440)
Q Consensus 217 eGi~Ai~~L~~~GI~vN~-----TlIFS~~Qa~a~aqA 249 (440)
-|..-++.+.+.|..+.+ |+++..+..++.+++
T Consensus 170 IG~~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~Ad~ 207 (214)
T PF06230_consen 170 IGPDTVENAAEAGLAGLAVEAGKTLILDREEVIALADK 207 (214)
T ss_pred cCHHHHHHHHHcCCeEEEEecCcEEEecHHHHHHHHHH
Confidence 488899999999877754 899999887766655
No 65
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=31.54 E-value=84 Score=29.14 Aligned_cols=47 Identities=17% Similarity=0.085 Sum_probs=39.2
Q ss_pred CcHHHHHhhcCccccccccccccccHHHHHhCCCCccccChHHHHHHH
Q 036665 77 TTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAI 124 (440)
Q Consensus 77 ~~l~~l~~~~gqs~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi 124 (440)
..+..|. +.|.++|+|+.......+..+....++.+.-.++++...-
T Consensus 137 ~~i~~l~-~~G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~ 183 (241)
T smart00052 137 ATLQRLR-ELGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQ 183 (241)
T ss_pred HHHHHHH-HCCCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhc
Confidence 4567775 7999999999876667788888889999999999997753
No 66
>cd03679 MM_CoA_mutase_alpha_like Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Alpha subunit-like subfamily; contains proteins similar to the alpha subunit of Propionbacterium shermanni MCM, as well as human and E. coli MCM. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In higher animals, MCM is involved in the breakdown of odd-chain fatty acids, several amino acids, and cholesterol. Methylobacterium extorquens MCM participates in the glyoxylate regeneration pathway. In M. extorquens, MCM forms a complex with
Probab=31.23 E-value=3.2e+02 Score=30.47 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHH
Q 036665 245 EVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALV 324 (440)
Q Consensus 245 a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~ 324 (440)
+..-+|++.+..+| .|++.++.=+|+|++-=.+.+.... =..-++++|..- ++
T Consensus 245 A~~~~Yl~~~~~~G-l~vd~~a~~lsF~~~~g~d~F~EIA---------------KlRAaR~LWa~i-----------~~ 297 (536)
T cd03679 245 ADGLEYIRTGLKAG-LDIDEFAPRLSFFWGIGMNFFMEIA---------------KLRAARLLWAKL-----------VK 297 (536)
T ss_pred HHHHHHHHHHHHcC-CCHHHHhcceEEEEecCccHHHHHH---------------HHHHHHHHHHHH-----------HH
Confidence 34556777776677 7887777778888865444422111 122233343332 33
Q ss_pred hcCCccce----eeeeeccccCCCCCch----------hhhhhhcCCCeeccCcHH
Q 036665 325 KKGAKKQR----LLWASTSVKNPAYPDT----------LYVAPLIGPDTVSTMPDQ 366 (440)
Q Consensus 325 ~~G~~~qr----lL~ASTsvKn~~~~~~----------~~v~~L~G~d~v~TiP~~ 366 (440)
++|.+..+ -+-|.||-++....+. .....+=|+|++.|.|.+
T Consensus 298 ~~G~~~~~~~~~r~ha~Ts~~~lT~~dP~~N~lR~T~ea~aAvlGGadsl~v~pfD 353 (536)
T cd03679 298 QFGPKNPKSLALRTHSQTSGWSLTEQDPYNNVVRTCIEAMAAVFGGTQSLHTNALD 353 (536)
T ss_pred HhCCCChhhhCceEEEEeCCcccchhcchhHHHHHHHHHHHHHhCCCCccccCcch
Confidence 45664211 2456677766443222 123447899999777765
No 67
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=31.16 E-value=97 Score=28.71 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=45.2
Q ss_pred CcHHHHHhhcCccccccccccccccHHHHHhCCCCccccChHHHHHHHhCCcchHHHHHHHH
Q 036665 77 TTLHDLYEQEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELV 138 (440)
Q Consensus 77 ~~l~~l~~~~gqs~W~D~i~R~~~el~~li~~Gv~GvTTNPsI~~kAi~~~~~Y~~~i~~l~ 138 (440)
..+..+. +.|.++|+|+.......+..+.+..++.+--+++++.+... +..+...++.++
T Consensus 136 ~~~~~l~-~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~-~~~~~~~l~~l~ 195 (240)
T cd01948 136 ATLRRLR-ALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET-DPEDRAIVRAII 195 (240)
T ss_pred HHHHHHH-HCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc-ChhhHHHHHHHH
Confidence 3566664 79999999999877788888888899999999999987544 234444444443
No 68
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.64 E-value=3.7e+02 Score=25.10 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhcCCCCccEEEE-ecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHH
Q 036665 148 YWELVIKDIQDACKLFESIYDETNGGDGYVSVE-VSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA-PCVPSIKEV 225 (440)
Q Consensus 148 y~~L~i~di~~a~d~l~p~~~~~~g~~G~VS~E-VdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~-eGi~Ai~~L 225 (440)
||..+.+-++++|+.+ |+.-.- .+ -..|.+..++..+.+.+. +++.+|=.|... ..-+.++++
T Consensus 12 ~~~~~~~g~~~~a~~~-----------g~~~~~~~~--~~~d~~~q~~~i~~~i~~--~~d~Iiv~~~~~~~~~~~l~~~ 76 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKEL-----------GYEVEIVFD--AQNDPEEQIEQIEQAISQ--GVDGIIVSPVDPDSLAPFLEKA 76 (257)
T ss_dssp HHHHHHHHHHHHHHHH-----------TCEEEEEEE--STTTHHHHHHHHHHHHHT--TESEEEEESSSTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-----------CCEEEEeCC--CCCCHHHHHHHHHHHHHh--cCCEEEecCCCHHHHHHHHHHH
Confidence 6666667777888765 222222 23 357889999999998876 477777666666 567899999
Q ss_pred HHCCCceEE
Q 036665 226 ISQGISVNV 234 (440)
Q Consensus 226 ~~~GI~vN~ 234 (440)
...||+|-.
T Consensus 77 ~~~gIpvv~ 85 (257)
T PF13407_consen 77 KAAGIPVVT 85 (257)
T ss_dssp HHTTSEEEE
T ss_pred hhcCceEEE
Confidence 999998844
No 69
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=29.99 E-value=4.9e+02 Score=28.52 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=44.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcC--CCcchHHHHHHHHHC--CCceEEeecCCHHHHHHHHHH
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIP--ATAPCVPSIKEVISQ--GISVNVTLIFSLARYEEVIDA 249 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIP--aT~eGi~Ai~~L~~~--GI~vN~TlIFS~~Qa~a~aqA 249 (440)
+|++-+-+. +....+ .++.++.|++. |-+-|.|=.. -|..-++.++++++. ++.+-+--|.|.+++..+.+|
T Consensus 227 ~GrL~Vgaa--vg~~~~-~~~~~~~l~~a-g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a 302 (495)
T PTZ00314 227 NGQLLVGAA--ISTRPE-DIERAAALIEA-GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA 302 (495)
T ss_pred CCCEEEEEE--ECCCHH-HHHHHHHHHHC-CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc
Confidence 565555331 233333 38888888885 2234444432 233347788888876 466656569999998888776
No 70
>cd03680 MM_CoA_mutase_ICM_like Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, isobutyryl-CoA mutase (ICM)-like subfamily; contains archaeal and bacterial proteins similar to the large subunit of Streptomyces cinnamonensis coenzyme B12-dependent ICM. ICM from S. cinnamonensis is comprised of a large and a small subunit. The holoenzyme appears to be an alpha2beta2 heterotetramer with up to 2 molecules of coenzyme B12 bound. The small subunit binds coenzyme B12. ICM catalyzes the reversible rearrangement of n-butyryl-CoA to isobutyryl-CoA, intermediates in fatty acid and valine catabolism, which in S. cinnamonensis can be converted to methylmalonyl-CoA and used in polyketide synthesis.
Probab=29.65 E-value=3.8e+02 Score=29.86 Aligned_cols=108 Identities=20% Similarity=0.317 Sum_probs=60.0
Q ss_pred cchHHHHHHHHHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCcccccc
Q 036665 216 APCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDL 295 (440)
Q Consensus 216 ~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~ 295 (440)
.+|--++.+|. |++ +..-+|++.+..+| .|++.++.=+|+|++-=.+.+.
T Consensus 234 eAGAt~vQELA-----------~tL----A~~~~Yl~~~~~~G-l~vd~~a~~lsF~~~~g~d~F~-------------- 283 (538)
T cd03680 234 EAGATAVQELA-----------FTL----ADGIAYVEAVLERG-LDVDEFAPRLSFFFNSHNDFFE-------------- 283 (538)
T ss_pred hCCCCHHHHHH-----------HHH----HHHHHHHHHHHHcC-CCHHHHhhceEEEEECCccHHH--------------
Confidence 36666666664 333 33456777776677 7777777778888765444321
Q ss_pred chHHHHHHHHHHHHHHHhccCCcchHHHH-h-cCCccce----eeeeeccccCCCCCch----------hhhhhhcCCCe
Q 036665 296 RGKAAVAQAALAYQLYQKKFSGPRWDALV-K-KGAKKQR----LLWASTSVKNPAYPDT----------LYVAPLIGPDT 359 (440)
Q Consensus 296 ~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~-~-~G~~~qr----lL~ASTsvKn~~~~~~----------~~v~~L~G~d~ 359 (440)
-|+..+.+-.. |..+. + +|.+..+ -+-|.||-++....+. .....+=|+|+
T Consensus 284 ----EIAKlRAaR~L---------Wa~i~~e~~G~~~~~s~~lr~ha~Ts~~~lT~~dP~~N~lR~T~ea~aAvlGGads 350 (538)
T cd03680 284 ----EIAKFRAARRI---------WAKIMKERFGAKNPRSMMLRFHTQTAGASLTAQQPENNIVRTALQALAAVLGGTQS 350 (538)
T ss_pred ----HHHHHHHHHHH---------HHHHHHHHcCCCChhhhCceEEEEeCCcccccccchhhHHHHHHHHHHHHhcCCCc
Confidence 13332222111 55554 3 6775332 2555566555333221 12245889999
Q ss_pred eccCcHH
Q 036665 360 VSTMPDQ 366 (440)
Q Consensus 360 v~TiP~~ 366 (440)
+.|.|.+
T Consensus 351 l~~~~fD 357 (538)
T cd03680 351 LHTNSFD 357 (538)
T ss_pred cccCcch
Confidence 9777664
No 71
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=29.55 E-value=3.9e+02 Score=30.28 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCcE-EEEc---CCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCC
Q 036665 187 DDTQGTVEAAKWLHKVVNRPNV-YIKI---PATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDL 262 (440)
Q Consensus 187 ~D~e~~v~eA~~L~~~v~r~nv-~IKI---PaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~ 262 (440)
.|.+.+.+-..+..+.. |++ .|-| |--.+|--++.+|.. +++..-+|++.+..+| .++
T Consensus 195 ~~~~~~~~~~~~~~~~~--p~~r~i~Vdg~~~h~AGAt~~QELA~---------------aLA~~v~ylr~l~~~G-l~~ 256 (619)
T TIGR00642 195 PDLTVLGDWVRRAAKFS--PDSRAVTVDANIYHNAGAGDVAELAW---------------ALATGAEYLRALTEQG-FTA 256 (619)
T ss_pred ccHHHHHHHHHHHHhhC--CCCceEEEeehhHhhcCCCHHHHHHH---------------HHHHHHHHHHHHHHcC-CCH
Confidence 44555555555544432 332 2333 333466666666642 2344567888887778 677
Q ss_pred CccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHH-HhcCCccc---eeeeeec
Q 036665 263 SRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDAL-VKKGAKKQ---RLLWAST 338 (440)
Q Consensus 263 ~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l-~~~G~~~q---rlL~AST 338 (440)
+.++.-++++++-=++++- -|+..+.+-.. |.++ +.+|..++ --+.|-|
T Consensus 257 ~~~a~~i~F~~a~g~d~F~------------------eIAKlRA~R~L---------Wari~~~~G~~~~~~~~~ihA~T 309 (619)
T TIGR00642 257 TEAFDTINFRVTATHDQFM------------------TIAKLRALREL---------WARIGEVFGDDEDKRGARQHAIT 309 (619)
T ss_pred HHHhcceEEEEecCchHHH------------------HHHHHHHHHHH---------HHHHHHHhCCCChhhcceEEEEe
Confidence 7776667776655444421 13322222111 3333 23465211 2366778
Q ss_pred cccCCCCCchh----------hhhhhcCCCeeccCcHH
Q 036665 339 SVKNPAYPDTL----------YVAPLIGPDTVSTMPDQ 366 (440)
Q Consensus 339 svKn~~~~~~~----------~v~~L~G~d~v~TiP~~ 366 (440)
|-++....|.+ ....+=|+|+|++.|.+
T Consensus 310 S~~~~T~~DP~vNmLR~T~eafaA~lGGadsl~v~pfD 347 (619)
T TIGR00642 310 SWRNKTREDPYVNILRGSIATFSASVGGADSITVLPFD 347 (619)
T ss_pred CCCcchhcchhhHHHHHHHHHHHHHhCCCCeeccCcch
Confidence 98887654431 12457799999776665
No 72
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=27.70 E-value=3e+02 Score=31.80 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=55.4
Q ss_pred CCCccEEEEecCCC-CCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHH-HHHCC--CceEEeecCCHHHHHH
Q 036665 172 GGDGYVSVEVSPRL-ADDTQGTVEAAKWLHKVVNRPNVYIKIPATA--PCVPSIKE-VISQG--ISVNVTLIFSLARYEE 245 (440)
Q Consensus 172 g~~G~VS~EVdP~l-a~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~--eGi~Ai~~-L~~~G--I~vN~TlIFS~~Qa~a 245 (440)
|.+-+|.+|---.. -.|++++|+|.++|.+. |.+=|-|-+|.-. +.++.|++ |.+.| |++-+-.=|.+.-|..
T Consensus 91 GG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~a-GceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~ 169 (733)
T PLN02925 91 GSEHPIRIQTMTTTDTKDVEATVDQVMRIADK-GADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALR 169 (733)
T ss_pred CCCCceEEEecCCCCcccHHHHHHHHHHHHHc-CCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHH
Confidence 44568888864332 57999999999999986 5577778887665 34555553 55555 7778888899987776
Q ss_pred HHHH
Q 036665 246 VIDA 249 (440)
Q Consensus 246 ~aqA 249 (440)
++++
T Consensus 170 a~~~ 173 (733)
T PLN02925 170 VAEC 173 (733)
T ss_pred HHHh
Confidence 6665
No 73
>TIGR00641 acid_CoA_mut_N methylmalonyl-CoA mutase N-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 abd AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the N-terminal domain subfamily. In a neighbor-joining tree, AF2215 branches with a bacterial isobutyryl-CoA mutase, which is also the same length. Scoring between the noise and trusted cutoffs are the non-catalytic, partially homologous beta chains from certain heterodimeric examples of 5.4.99.2.
Probab=27.19 E-value=4.1e+02 Score=29.55 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=30.9
Q ss_pred cchHHHHHHHHHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHH
Q 036665 216 APCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTL 279 (440)
Q Consensus 216 ~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~ 279 (440)
.+|--++.+|. |++ +..-+|++.+..+| .|++.++.=+|+|++-=.+.
T Consensus 214 eAGAt~vQELA-----------~tL----A~~~~Ylr~~~~~G-l~vd~~a~ri~F~~~~g~d~ 261 (528)
T TIGR00641 214 EAGATAVQELA-----------FTL----ADGIEYIRAGLSRG-LDVDSFAPRLSFFFGIGMNF 261 (528)
T ss_pred hCCCCHHHHHH-----------HHH----HHHHHHHHHHHHcC-CCHHHHhhceEEEEecCchH
Confidence 36666666664 333 34456777776777 77777777788887654444
No 74
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.16 E-value=1.7e+02 Score=27.20 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEEcC---CCcchHHHHHHHHHC--CCceEEee-cCCHH
Q 036665 186 ADDTQGTVEAAKWLHKVVNRPNVYIKIP---ATAPCVPSIKEVISQ--GISVNVTL-IFSLA 241 (440)
Q Consensus 186 a~D~e~~v~eA~~L~~~v~r~nv~IKIP---aT~eGi~Ai~~L~~~--GI~vN~Tl-IFS~~ 241 (440)
..|.++.++-++.+ . ..--.|||+ .++.|++.++.|.+. +..+-+.+ ++++.
T Consensus 8 ~~~~~~a~~~~~~l-~---~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~ 65 (206)
T TIGR03128 8 LLDIEEALELAEKV-A---DYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAG 65 (206)
T ss_pred CCCHHHHHHHHHHc-c---cCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccch
Confidence 35676666666665 2 223479995 345789999999886 55566665 56776
No 75
>cd03677 MM_CoA_mutase_beta Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Beta subunit-like subfamily; contains bacterial proteins similar to the beta subunit of MCMs from Propionbacterium shermanni and Streptomyces cinnamonensis, which are alpha/beta heterodimers. For P. shermanni MCM, it is known that only the alpha subunit binds coenzyme B12 and substrates. The role of the beta subunit is unclear. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. Methylobacterium extorquens MCM participates in the glyoxylate regeneration pathway. In M. extorquens, MCM forms a complex with MeaB; MeaB may protect MCM from irreversib
Probab=26.71 E-value=4.5e+02 Score=28.28 Aligned_cols=94 Identities=21% Similarity=0.290 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHH
Q 036665 244 EEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDAL 323 (440)
Q Consensus 244 ~a~aqA~lagl~~aG~~~~~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l 323 (440)
.+.+-+|++.+..+| .|++.++.=++++++==.+++ ..|+..|.+-.. |.++
T Consensus 205 LA~~~~ylr~l~~~G-l~~~~~~~~i~f~~~~g~d~F------------------~eIAKlRA~R~L---------Wa~i 256 (424)
T cd03677 205 LAAAVEYLRALTEAG-LDVEEAARQIEFRLAVGSDQF------------------LEIAKLRALRLL---------WARI 256 (424)
T ss_pred HHHHHHHHHHHHHcC-CCHHHHhhhEEEEEECCccHH------------------HHHHHHHHHHHH---------HHHH
Confidence 345667888887778 676666655566554333332 123332222111 2222
Q ss_pred -HhcCCc---cceeeeeeccccCCCCCchh----------hhhhhcCCCeeccCcHH
Q 036665 324 -VKKGAK---KQRLLWASTSVKNPAYPDTL----------YVAPLIGPDTVSTMPDQ 366 (440)
Q Consensus 324 -~~~G~~---~qrlL~ASTsvKn~~~~~~~----------~v~~L~G~d~v~TiP~~ 366 (440)
+++|.+ .. -+.|-||-++....|.+ ....+=|||+|++.|.+
T Consensus 257 ~~~~G~~~~~~~-~iha~TS~~~~T~~DP~vN~LR~T~ea~aA~lGGadsl~v~pfD 312 (424)
T cd03677 257 AEAYGVPEARAA-RIHARTSRRNKTRYDPYVNMLRTTTEAFSAGLGGADSITVLPFD 312 (424)
T ss_pred HHHhCCccccCC-eEEEEeCCCcchhhcchhhHHHHHHHHHHHHhcCCCeeccCcch
Confidence 334553 22 36677898886654431 23457899999666654
No 76
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=26.39 E-value=1.3e+02 Score=30.88 Aligned_cols=44 Identities=16% Similarity=0.103 Sum_probs=29.4
Q ss_pred cHHHHHhCCCCccccC-hHHHHHHHhCCcchHHHHHHHHHcCCChHHHHHHHHHHHH
Q 036665 101 DLLPLIASGVRGVTSN-PAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDI 156 (440)
Q Consensus 101 el~~li~~Gv~GvTTN-PsI~~kAi~~~~~Y~~~i~~l~~~g~~~~e~y~~L~i~di 156 (440)
+.+++++.|++|++|| |..+..... . .+..++.+..+..++.|+
T Consensus 258 ~~~~l~~~GVDgIiTD~P~~l~~~~~---~---------~~~~~~~~~~~~~~~~~~ 302 (316)
T cd08610 258 LFSLAWCSGIHSVTTNNIHLLKQLDH---P---------HFFMTPKFYVFMWLLADI 302 (316)
T ss_pred HHHHHHhCCcCEEEeCCHHHHHHhhc---h---------hhhCCHHHHHHHHHHHHH
Confidence 5788889999999999 887755322 1 134667666555455554
No 77
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=26.12 E-value=6.2e+02 Score=25.60 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCCCC-CHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceE
Q 036665 183 PRLAD-DTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVN 233 (440)
Q Consensus 183 P~la~-D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN 233 (440)
|..++ |.|..++.|.++.+.. .=..|||=...+=.+-++.|.+.||+|.
T Consensus 84 Pf~sy~~~e~a~~na~rl~~ea--Ga~aVkiEgg~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 84 PFMSYATPEQALKNAARVMQET--GANAVKLEGGEWLVETVQMLTERGVPVV 133 (263)
T ss_pred CcCCCCCHHHHHHHHHHHHHHh--CCeEEEEcCcHhHHHHHHHHHHCCCCEE
Confidence 44444 6899999999999842 3578999888776788999999999998
No 78
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=26.04 E-value=2.2e+02 Score=28.75 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=50.1
Q ss_pred CccEEEEecCCCCC--CHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHCCCceEEeecCCHHHH
Q 036665 174 DGYVSVEVSPRLAD--DTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARY 243 (440)
Q Consensus 174 ~G~VS~EVdP~la~--D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa 243 (440)
.-+|..-. |..++ +.+.-++.|.||.+..+ ==.||+=.-.+=.+.++.|...||+|..-+=+++..+
T Consensus 77 ~~~vv~Dm-Pf~sy~~s~e~av~nA~rl~ke~G--adaVKlEGg~~~~~~i~~l~~~GIPV~gHiGLtPQ~~ 145 (261)
T PF02548_consen 77 NAFVVADM-PFGSYQASPEQAVRNAGRLMKEAG--ADAVKLEGGAEIAETIKALVDAGIPVMGHIGLTPQSV 145 (261)
T ss_dssp SSEEEEE---TTSSTSSHHHHHHHHHHHHHTTT---SEEEEEBSGGGHHHHHHHHHTT--EEEEEES-GGGH
T ss_pred CceEEecC-CcccccCCHHHHHHHHHHHHHhcC--CCEEEeccchhHHHHHHHHHHCCCcEEEEecCchhhe
Confidence 44565555 77777 99999999999998422 3468998888889999999999999999999998753
No 79
>cd00512 MM_CoA_mutase Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM)-like family; contains proteins similar to MCM, and the large subunit of Streptomyces coenzyme B12-dependent isobutyryl-CoA mutase (ICM). MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In higher animals, MCM is involved in the breakdown of odd-chain fatty acids, several amino acids, and cholesterol. Methylobacterium extorquens MCM participates in the glyoxylate regeneration pathway. In M. extorquens, MCM forms a complex with MeaB; MeaB may protect MCM from irreversible inactivation. In some bacteria, MCM is involved in the reverse metabolic reaction, the
Probab=25.91 E-value=4.8e+02 Score=27.91 Aligned_cols=135 Identities=15% Similarity=0.216 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCcE-EEEcCC---CcchHHHHHHHHHCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCCCC
Q 036665 187 DDTQGTVEAAKWLHKVVNRPNV-YIKIPA---TAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDL 262 (440)
Q Consensus 187 ~D~e~~v~eA~~L~~~v~r~nv-~IKIPa---T~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA~lagl~~aG~~~~ 262 (440)
.+.+.+.+...+..+.. |++ .|-|-+ -.+|--++.+|. |++ +..-+|++.+..+| .++
T Consensus 134 ~~~~~~~~~~~~~~~~~--p~~~~i~v~g~~~~~aGAt~~QELA-----------~aL----A~~~~ylr~l~~~G-l~~ 195 (399)
T cd00512 134 PSLRVLGDIIEYCSANI--PKWNPVSISGYHMQEAGATPVQELA-----------YTL----ATGIEYVRACLERG-LDV 195 (399)
T ss_pred hhHHHHHHHHHHHHHhC--CCceEEEEechhHhhCCCCHHHHHH-----------HHH----HHHHHHHHHHHHcC-CCH
Confidence 34445555555444432 332 233322 336666666664 233 34456888777777 677
Q ss_pred CccceEEeechhhhhHHHhhhhhhcCCccccccchHHHHHHHHHHHHHHHhccCCcchHHHH-hcCCcc-c---eeeeee
Q 036665 263 SRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALV-KKGAKK-Q---RLLWAS 337 (440)
Q Consensus 263 ~~vasviSpfVgRiD~~~d~~l~~~g~~~a~~~~G~~~Ia~a~~~y~~y~~~f~~~~w~~l~-~~G~~~-q---rlL~AS 337 (440)
+.++.=++++++==.+++. -|+..|.+-.. |..+. ++|... . --+.|.
T Consensus 196 ~~~a~~i~F~~~~g~~~F~------------------EIAKlRA~R~L---------Wa~i~~~~g~~~~~~~~~~iha~ 248 (399)
T cd00512 196 DEFAPRLSFFFGIGMNFFE------------------EIAKLRAARRI---------WARITRDFGGAEPKSRRLRYHVQ 248 (399)
T ss_pred HHHhhceEEEEEcCchHHH------------------HHHHHHHHHHH---------HHHHHHHhCCCChhhhCceEEEE
Confidence 6666666776654333321 13332222111 33332 234432 1 136677
Q ss_pred ccccCCCCCch----------hhhhhhcCCCeeccCcHH
Q 036665 338 TSVKNPAYPDT----------LYVAPLIGPDTVSTMPDQ 366 (440)
Q Consensus 338 TsvKn~~~~~~----------~~v~~L~G~d~v~TiP~~ 366 (440)
||-++....|. .....+=|+|+|++.|.+
T Consensus 249 TS~~~~T~~DP~vN~LR~T~ea~aA~lGGadsl~v~pfD 287 (399)
T cd00512 249 TSGRSLTAQQPYNNVARTSIQAMAATLGGAQSLHTNAYD 287 (399)
T ss_pred eCCcccccccchhhHHHHHHHHHHHHhCCCCccccCcch
Confidence 88887655433 123457899999666654
No 80
>PRK00208 thiG thiazole synthase; Reviewed
Probab=25.67 E-value=3.4e+02 Score=27.34 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcEEEEc----------CCCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHHH
Q 036665 184 RLADDTQGTVEAAKWLHKVVNRPNVYIKI----------PATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDA 249 (440)
Q Consensus 184 ~la~D~e~~v~eA~~L~~~v~r~nv~IKI----------PaT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA 249 (440)
.-+++.++-|.-|+--.+..+ .=+||+ |-..+-++|+++|.++|..|.--..=++..+.++.++
T Consensus 70 aG~~ta~eAv~~a~lare~~~--~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~ 143 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALG--TNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA 143 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhC--CCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc
Confidence 347788888887765555432 336675 3344789999999999988865666677666555443
No 81
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=25.29 E-value=3.4e+02 Score=30.62 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=53.8
Q ss_pred CCCccEEEEecCCC-CCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc--chHHHHH-HHHHCC--CceEEeecCCHHHHHH
Q 036665 172 GGDGYVSVEVSPRL-ADDTQGTVEAAKWLHKVVNRPNVYIKIPATA--PCVPSIK-EVISQG--ISVNVTLIFSLARYEE 245 (440)
Q Consensus 172 g~~G~VS~EVdP~l-a~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~--eGi~Ai~-~L~~~G--I~vN~TlIFS~~Qa~a 245 (440)
|.+-+|++|---.. -.|++++|+|.++|.+. |-+=|-|-+|.-. +.++.|+ .|.+.| |++=+-.=|.+.=|..
T Consensus 26 GG~~PI~VQSMt~t~T~D~~atv~Qi~~L~~a-GceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~ 104 (606)
T PRK00694 26 GSEHSIKIQSMTTTATTDVDGTVRQICALQEW-GCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMH 104 (606)
T ss_pred CCCCceEEEecCCCCcccHHHHHHHHHHHHHc-CCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHH
Confidence 45568999864332 56999999999999986 5577777777655 3344444 344555 6667778899887766
Q ss_pred HHHH
Q 036665 246 VIDA 249 (440)
Q Consensus 246 ~aqA 249 (440)
++++
T Consensus 105 a~~~ 108 (606)
T PRK00694 105 VADF 108 (606)
T ss_pred HHHh
Confidence 6665
No 82
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=25.23 E-value=1.3e+02 Score=31.83 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=58.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHHC------CCceEEeecCCHHHHHHHH
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQ------GISVNVTLIFSLARYEEVI 247 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~~------GI~vN~TlIFS~~Qa~a~a 247 (440)
.--+.+|+ |+ + -+.++++-.+-.+.+.+||+|-=--|+||.+|++.|..- --++.-|-..|.+-...++
T Consensus 145 ~~~i~fqi---ls-n-peflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaa 219 (481)
T KOG2666|consen 145 SKGIKFQI---LS-N-PEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAA 219 (481)
T ss_pred CCCceeEe---cc-C-hHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHH
Confidence 34577888 44 2 357788888888889999999999999999999999841 1244556678888888888
Q ss_pred HHHHHHH
Q 036665 248 DAYLDGL 254 (440)
Q Consensus 248 qA~lagl 254 (440)
.|+++--
T Consensus 220 naflaqr 226 (481)
T KOG2666|consen 220 NAFLAQR 226 (481)
T ss_pred HHHHHHH
Confidence 8887753
No 83
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=24.27 E-value=6.9e+02 Score=25.03 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=56.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCc------chH----------HHHHHHHHCCCceEEeec
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATA------PCV----------PSIKEVISQGISVNVTLI 237 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~------eGi----------~Ai~~L~~~GI~vN~TlI 237 (440)
..++-+|..| +++|++-|.++ +|.-+-=||-.+ -|+ +.++.|.+.||+|-+=.=
T Consensus 65 ~~~lNlE~a~-----~~em~~ia~~~-----kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid 134 (239)
T PRK05265 65 KTELNLEMAA-----TEEMLDIALEV-----KPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID 134 (239)
T ss_pred CCCEEeccCC-----CHHHHHHHHHC-----CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3477888853 56799999886 577676788654 344 458999999999988877
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCccceEEeechhhh
Q 036665 238 FSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRV 276 (440)
Q Consensus 238 FS~~Qa~a~aqA~lagl~~aG~~~~~~vasviSpfVgRi 276 (440)
=.++|..++.+. | +..|=.|-|..
T Consensus 135 P~~~qi~~A~~~--------G-------Ad~VELhTG~y 158 (239)
T PRK05265 135 PDPEQIEAAAEV--------G-------ADRIELHTGPY 158 (239)
T ss_pred CCHHHHHHHHHh--------C-------cCEEEEechhh
Confidence 788886655543 7 66777777665
No 84
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=24.26 E-value=3.6e+02 Score=27.14 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcEEEEcC----------CCcchHHHHHHHHHCCCceEEeecCCHHHHHHHHHH
Q 036665 184 RLADDTQGTVEAAKWLHKVVNRPNVYIKIP----------ATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDA 249 (440)
Q Consensus 184 ~la~D~e~~v~eA~~L~~~v~r~nv~IKIP----------aT~eGi~Ai~~L~~~GI~vN~TlIFS~~Qa~a~aqA 249 (440)
.-+++.++-|.-|+--.+..+ .=+||+= --.+-++|+++|.++|..|.--..=++..+.++.++
T Consensus 70 aG~~ta~eAv~~a~lare~~~--~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~ 143 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALG--TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA 143 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhC--CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc
Confidence 347888888887765555432 3367753 333789999999999998865666677665555443
No 85
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.57 E-value=4.6e+02 Score=26.07 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=50.8
Q ss_pred EEEEecCCCCCC-HHHHHHHHHHHHhhcCCCcEEEEcCCCcc------hHHHHHHHHHC-CCceEEeecCCHHHHHHHHH
Q 036665 177 VSVEVSPRLADD-TQGTVEAAKWLHKVVNRPNVYIKIPATAP------CVPSIKEVISQ-GISVNVTLIFSLARYEEVID 248 (440)
Q Consensus 177 VS~EVdP~la~D-~e~~v~eA~~L~~~v~r~nv~IKIPaT~e------Gi~Ai~~L~~~-GI~vN~TlIFS~~Qa~a~aq 248 (440)
+|+|++|--..+ .+.+.+.++.|... .--.|-|+-.+- -+.+++.|..+ ||++-..+...- .-..-.+
T Consensus 1 ~s~E~~PP~~~~~~~~l~~~~~~l~~~---~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~-~n~~~l~ 76 (272)
T TIGR00676 1 FSFEFFPPKTDEGEENLWETVDRLSPL---DPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIG-ATREEIR 76 (272)
T ss_pred CEEEEECcCCchhHHHHHHHHHHHhcC---CCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecC-CCHHHHH
Confidence 589999988766 58999999888764 112445544443 47788888854 999877665432 1223355
Q ss_pred HHHHHHHHcC
Q 036665 249 AYLDGLEASG 258 (440)
Q Consensus 249 A~lagl~~aG 258 (440)
..+.++...|
T Consensus 77 ~~L~~~~~~G 86 (272)
T TIGR00676 77 EILREYRELG 86 (272)
T ss_pred HHHHHHHHCC
Confidence 6666665555
No 86
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=23.57 E-value=5.9e+02 Score=27.32 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEcC--CCcchHHHHHHHHHC--CCceEEeecCCHHHHHHHHHH
Q 036665 190 QGTVEAAKWLHKVVNRPNVYIKIP--ATAPCVPSIKEVISQ--GISVNVTLIFSLARYEEVIDA 249 (440)
Q Consensus 190 e~~v~eA~~L~~~v~r~nv~IKIP--aT~eGi~Ai~~L~~~--GI~vN~TlIFS~~Qa~a~aqA 249 (440)
+...++++.|.+. +-+-|+|=.. -+..-++.++.+++. .++|-+--|.|.+++..+.+|
T Consensus 223 ~~~~~r~~~L~~a-G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a 285 (450)
T TIGR01302 223 EFDKERAEALVKA-GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA 285 (450)
T ss_pred hhHHHHHHHHHHh-CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh
Confidence 4567788888875 2244555441 234567788888876 688888889999999888776
No 87
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=23.55 E-value=4.9e+02 Score=26.20 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=48.0
Q ss_pred cEEEEec-CCCCCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcc------hHHHHHHHHHC-CCceEEeecCCHHHHHHHH
Q 036665 176 YVSVEVS-PRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAP------CVPSIKEVISQ-GISVNVTLIFSLARYEEVI 247 (440)
Q Consensus 176 ~VS~EVd-P~la~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~e------Gi~Ai~~L~~~-GI~vN~TlIFS~~Qa~a~a 247 (440)
.+|+|+. |+-..+.+.+.+..++|... .-.+|-|+-..- -+.+++.|..+ ||++-..+..--.- ..-.
T Consensus 1 ~~S~E~~PPk~~~~~~~~~~~~~~l~~~---~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~-~~~l 76 (281)
T TIGR00677 1 TFSFEFFPPKTEEGVQNLYERMDRMVAS---GPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMP-IEMI 76 (281)
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHhhC---CCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCC-HHHH
Confidence 4799999 65555577777777777654 234455554442 38899999876 99986655432111 1234
Q ss_pred HHHHHHHHHcC
Q 036665 248 DAYLDGLEASG 258 (440)
Q Consensus 248 qA~lagl~~aG 258 (440)
+..+.++..+|
T Consensus 77 ~~~L~~~~~~G 87 (281)
T TIGR00677 77 DDALERAYSNG 87 (281)
T ss_pred HHHHHHHHHCC
Confidence 55555554444
No 88
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=22.36 E-value=4e+02 Score=28.27 Aligned_cols=72 Identities=28% Similarity=0.306 Sum_probs=52.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHhh-------cCCCcEEE---EcCCCcchHHHHHHHHHCCCceEEee-cCCHHH
Q 036665 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKV-------VNRPNVYI---KIPATAPCVPSIKEVISQGISVNVTL-IFSLAR 242 (440)
Q Consensus 174 ~G~VS~EVdP~la~D~e~~v~eA~~L~~~-------v~r~nv~I---KIPaT~eGi~Ai~~L~~~GI~vN~Tl-IFS~~Q 242 (440)
..+||+-+ |+..|-+++++.|+.+-+. .||.+-.= +=|+.|+-|+++++.... |++-+-. |.|++.
T Consensus 141 ~~pVs~KI--RI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~~~d 217 (358)
T KOG2335|consen 141 NVPVSVKI--RIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILSLED 217 (358)
T ss_pred CCCeEEEE--EecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCcHHH
Confidence 34588877 5899999999999988663 23332222 557888888888887776 7776653 888888
Q ss_pred HHHHHH
Q 036665 243 YEEVID 248 (440)
Q Consensus 243 a~a~aq 248 (440)
+..|.+
T Consensus 218 ~~~~~~ 223 (358)
T KOG2335|consen 218 VERCLK 223 (358)
T ss_pred HHHHHH
Confidence 877776
No 89
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=21.64 E-value=5.9e+02 Score=26.87 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=53.5
Q ss_pred CCCccEEEEecCCC-CCCHHHHHHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHHHH-CCCceEEeecCCHHHHHHHHHH
Q 036665 172 GGDGYVSVEVSPRL-ADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVIS-QGISVNVTLIFSLARYEEVIDA 249 (440)
Q Consensus 172 g~~G~VS~EVdP~l-a~D~e~~v~eA~~L~~~v~r~nv~IKIPaT~eGi~Ai~~L~~-~GI~vN~TlIFS~~Qa~a~aqA 249 (440)
|.+-+|++|---.. ..|.+++++|-++|.+. |-+=|-|-+|.-. --+|++++.+ -.|++=+-.=|....|..++++
T Consensus 15 GG~~PI~VQSMtnt~T~Dv~atv~QI~~L~~a-GceiVRvavp~~~-~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~ 92 (346)
T TIGR00612 15 GGDAPIVVQSMTNTDTIDIDSTVAQIRALEEA-GCDIVRVTVPDRE-SAAAFEAIKEGTNVPLVADIHFDYRLAALAMAK 92 (346)
T ss_pred CCCCcEEEEecCCCCchhHHHHHHHHHHHHHc-CCCEEEEcCCCHH-HHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHh
Confidence 34568888864332 56999999999999986 5566777777543 3455555554 3688888899998776655555
No 90
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=20.77 E-value=1e+03 Score=25.16 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=52.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHHHHHhhcC--CCcEE------EEcCCCc-------------------chHHHHH
Q 036665 171 NGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVN--RPNVY------IKIPATA-------------------PCVPSIK 223 (440)
Q Consensus 171 ~g~~G~VS~EVdP~la~D~e~~v~eA~~L~~~v~--r~nv~------IKIPaT~-------------------eGi~Ai~ 223 (440)
.|.|.++-+=|-|.-.+|.+..++-|++|.++.. +++++ +==|=|. +||+.++
T Consensus 43 ~g~d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~GL~~~R 122 (344)
T TIGR00034 43 AGKDDRLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINHGLRIAR 122 (344)
T ss_pred cCCCCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHHHHHHHH
Confidence 4788999999999999999999999999988622 12222 1115443 8999999
Q ss_pred HH----HHCCCceEEeecCCHHH
Q 036665 224 EV----ISQGISVNVTLIFSLAR 242 (440)
Q Consensus 224 ~L----~~~GI~vN~TlIFS~~Q 242 (440)
+| .+.|+++ +|=+..+..
T Consensus 123 ~ll~~i~~~GlPv-atE~ld~~~ 144 (344)
T TIGR00034 123 KLLLDLVNLGLPI-AGEFLDMIS 144 (344)
T ss_pred HHHHHHHHhCCCe-EEEecCcCc
Confidence 88 4679999 555555433
No 91
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=20.47 E-value=5.9e+02 Score=25.35 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=48.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhh---cCCCcEEEEcCCCc---------chHHHHHHHHH-CCCceEEeecCCHHHH
Q 036665 177 VSVEVSPRLADDTQGTVEAAKWLHKV---VNRPNVYIKIPATA---------PCVPSIKEVIS-QGISVNVTLIFSLARY 243 (440)
Q Consensus 177 VS~EVdP~la~D~e~~v~eA~~L~~~---v~r~nv~IKIPaT~---------eGi~Ai~~L~~-~GI~vN~TlIFS~~Qa 243 (440)
..+=.-|...++.+.+++.|++|.+. +.+ ..+-| |-|. +|++.+++... .||.+ +|-+|+..|+
T Consensus 26 ~~~IAGpc~ie~~~~~~~~A~~lk~~~~k~~r-~~~~K-pRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~-~t~~~d~~~~ 102 (260)
T TIGR01361 26 PIVIAGPCSVESEEQIMETARFVKEAGAKILR-GGAFK-PRTSPYSFQGLGEEGLKLLRRAADEHGLPV-VTEVMDPRDV 102 (260)
T ss_pred EEEEEeCCccCCHHHHHHHHHHHHHHHHHhcc-Cceec-CCCCCccccccHHHHHHHHHHHHHHhCCCE-EEeeCChhhH
Confidence 34455588899999999999999874 211 23334 3333 67777777665 59999 7889999987
Q ss_pred HHHHH
Q 036665 244 EEVID 248 (440)
Q Consensus 244 ~a~aq 248 (440)
..+.+
T Consensus 103 ~~l~~ 107 (260)
T TIGR01361 103 EIVAE 107 (260)
T ss_pred HHHHh
Confidence 66544
No 92
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.30 E-value=6.2e+02 Score=22.55 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=36.0
Q ss_pred ccEEEEecCCCCCC----HHHHHHHHHHHHhhcCCCcEEEEcCCC------cch-HHHHHHHHHC---CCceEEeec
Q 036665 175 GYVSVEVSPRLADD----TQGTVEAAKWLHKVVNRPNVYIKIPAT------APC-VPSIKEVISQ---GISVNVTLI 237 (440)
Q Consensus 175 G~VS~EVdP~la~D----~e~~v~eA~~L~~~v~r~nv~IKIPaT------~eG-i~Ai~~L~~~---GI~vN~TlI 237 (440)
.+|.+.|+ +.+ ++++++.+++..+. |-+=+++=.|.- +++ ++-++++.+. |+++.+..+
T Consensus 49 ~~v~~~v~---~~~~~~~~~~~~~~a~~a~~~-Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~ 121 (201)
T cd00945 49 VPVIVVVG---FPTGLTTTEVKVAEVEEAIDL-GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILE 121 (201)
T ss_pred CeEEEEec---CCCCCCcHHHHHHHHHHHHHc-CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 46677775 344 78888888888775 334455544431 122 3444555554 888887776
No 93
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=20.22 E-value=5.9e+02 Score=27.59 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEEcC-CC-cchHHHHHHHHHC--CCceEEeecCCHHHHHHHHHH
Q 036665 191 GTVEAAKWLHKVVNRPNVYIKIP-AT-APCVPSIKEVISQ--GISVNVTLIFSLARYEEVIDA 249 (440)
Q Consensus 191 ~~v~eA~~L~~~v~r~nv~IKIP-aT-~eGi~Ai~~L~~~--GI~vN~TlIFS~~Qa~a~aqA 249 (440)
...+.++.|.+. +-+-++|..+ .- ..-+..++.+.++ ++++-+=-|.|.+++..+.+|
T Consensus 228 ~~~e~a~~L~~a-gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a 289 (486)
T PRK05567 228 DNEERAEALVEA-GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA 289 (486)
T ss_pred chHHHHHHHHHh-CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc
Confidence 447888888875 2233444432 11 1346678888876 688889999999999888776
Done!