RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 036665
(440 letters)
>gnl|CDD|235117 PRK03343, PRK03343, transaldolase; Validated.
Length = 368
Score = 541 bits (1397), Expect = 0.0
Identities = 199/368 (54%), Positives = 250/368 (67%), Gaps = 15/368 (4%)
Query: 79 LHDLYEQEGQSPWYDNLCRPVTDLLP------LIAS-GVRGVTSNPAIFQKAISSSNAYN 131
L L GQS W D+L R D L LI GV GVTSNPAIFQKAI+ +AY+
Sbjct: 5 LQALSAL-GQSIWLDDLSR---DRLTSGNLARLIDEKGVVGVTSNPAIFQKAIAGGDAYD 60
Query: 132 DQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQG 191
Q EL +G D+E AY EL D+++AC + +Y+ T G DG VS+EVSPRLA DT+
Sbjct: 61 AQIAELAAAGADVEEAYEELTTADVRNACDVLRPVYEATGGVDGRVSIEVSPRLAHDTEA 120
Query: 192 TVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 251
T+ A+ L V+RPN+ IKIPAT +P+I+ +I++GISVNVTLIFS+ RY V DAYL
Sbjct: 121 TIAEARRLWAAVDRPNLMIKIPATPEGLPAIEALIAEGISVNVTLIFSVERYRAVADAYL 180
Query: 252 DGLE---ASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAY 308
GLE A+G DLS++ SVASFFVSRVDT +DK LE IGT EAL LRGKAA+A A LAY
Sbjct: 181 RGLEKRLAAGH-DLSKIHSVASFFVSRVDTEVDKRLEAIGTDEALALRGKAAIANARLAY 239
Query: 309 QLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQAL 368
Q Y++ F+ PRW AL GA+ QR LWAST KNPAY DTLYV L+ PDTV+TMP+ L
Sbjct: 240 QAYEEVFASPRWAALAAAGARPQRPLWASTGTKNPAYSDTLYVDELVAPDTVNTMPEATL 299
Query: 369 QAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 428
AF DHG V+ T+ + EA+ + +AL LGID + V LE EGVD F+ S++ LL +L
Sbjct: 300 DAFADHGEVADTLTGDYEEAQAVLAALAALGIDLDDVTAVLEEEGVDKFEASWNELLASL 359
Query: 429 QEKANSLK 436
+ K ++L
Sbjct: 360 EAKLDALA 367
>gnl|CDD|188642 cd00955, Transaldolase_like, Transaldolase-like proteins from
plants and bacteria. Transaldolase-like proteins from
plants and bacteria. Transaldolase is found in the
non-oxidative branch of the pentose phosphate pathway,
that catalyze the reversible transfer of a
dihydroxyacetone group from fructose-6-phosphate to
erythrose-4-phosphate yielding sedoheptulose-7-phosphate
and glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates.
Length = 338
Score = 522 bits (1347), Expect = 0.0
Identities = 208/341 (60%), Positives = 241/341 (70%), Gaps = 9/341 (2%)
Query: 89 SPWYDNLCRPVTDLLPLIAS----GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDI 144
S W DNL R D L GV GVTSNPAIF+KAI+ S AY+DQ R L G D
Sbjct: 1 SLWLDNLSRSFIDNGFLKRLIEEQGVVGVTSNPAIFEKAIAGSAAYDDQIRALKGQGLDA 60
Query: 145 EAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVN 204
EA Y L I+DIQDAC L +Y++T G DGYVS+EVSPRLADDTQGT+ AK L K V
Sbjct: 61 EAIYEALAIEDIQDACDLLAPVYEQTGGNDGYVSLEVSPRLADDTQGTIAEAKRLWKAVG 120
Query: 205 RPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEAS--GLSDL 262
RPN+ IKIPAT +P+I+E+I+ GISVNVTLIFSL +YE V +AYL GLE G DL
Sbjct: 121 RPNLMIKIPATEAGLPAIEELIAAGISVNVTLIFSLEQYEAVAEAYLRGLERRVEGGGDL 180
Query: 263 SRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDA 322
S+V SVASFFVSRVDTLIDK L+ PEA L+GK A+A A LAYQ YQ+KFSGPRW A
Sbjct: 181 SQVASVASFFVSRVDTLIDKKLDA---PEAKALQGKVAIANAKLAYQEYQEKFSGPRWAA 237
Query: 323 LVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTID 382
L GAK QRLLWAST VKNPAYPD LYV LIGPDTV+TMPD L+AF DHG V T++
Sbjct: 238 LAAAGAKPQRLLWASTGVKNPAYPDVLYVEELIGPDTVNTMPDATLKAFADHGEVRPTLE 297
Query: 383 LNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDS 423
+ EAE + + LE+LGID + V +L EGV FK SF+
Sbjct: 298 EGLEEAERVLAELERLGIDLDAVTEKLLKEGVKKFKDSFEK 338
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 441 bits (1136), Expect = e-147
Identities = 183/364 (50%), Positives = 237/364 (65%), Gaps = 17/364 (4%)
Query: 84 EQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQ 139
Q GQS W D L R +L L+ G+RGVTSNPAIF+KAI SS+ Y+D + +
Sbjct: 8 AQHGQSVWLDFLARGFIAKGELKRLVEEDGLRGVTSNPAIFEKAIGSSDEYDDAIKAALA 67
Query: 140 SG-KDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKW 198
G + + Y L I+DIQ A + +YD T+G DG+VS+EVSP LA DT+GT+ A+
Sbjct: 68 EGDRSVIELYETLAIEDIQAAADVLRPVYDATDGADGFVSLEVSPYLALDTEGTIAEARR 127
Query: 199 LHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE--- 255
L V+RPN+ IK+PAT +P+I+++I++GI+VNVTL+FS YEEV +AY+ GLE
Sbjct: 128 LWAAVDRPNLMIKVPATPEGLPAIRQLIAEGINVNVTLLFSQDVYEEVAEAYISGLEARA 187
Query: 256 ASGLSDLSRVTSVASFFVSRVDTLIDKML-EKIGTP------EALD-LRGKAAVAQAALA 307
A G D S V SVASFFVSR+D+ +DK L EKI AL+ L+GK A+A A LA
Sbjct: 188 AKG-GDPSHVASVASFFVSRIDSAVDKRLDEKIAAANDPAEKAALEALKGKVAIANAKLA 246
Query: 308 YQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQA 367
YQ Y++ F+GPRW+AL KGAK QRLLWAST KN AY D LYV LIGPDTV+TMP
Sbjct: 247 YQRYKRLFAGPRWEALAAKGAKPQRLLWASTGTKNKAYSDVLYVEELIGPDTVNTMPPAT 306
Query: 368 LQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDT 427
L AF DHG V T++ +V EA + + L + GI + V +L EGV F +FD LL
Sbjct: 307 LDAFRDHGKVRATLEEDVDEARAVLADLAEAGISLDAVTDKLVAEGVQLFADAFDKLLGA 366
Query: 428 LQEK 431
+ EK
Sbjct: 367 VAEK 370
>gnl|CDD|188631 cd00439, Transaldolase, Transaldolase. Transaldolase. Enzymes
found in the non-oxidative branch of the pentose
phosphate pathway, that catalyze the reversible transfer
of a dihydroxyacetone group from fructose-6-phosphate to
erythrose-4-phosphate yielding sedoheptulose-7-phosphate
and glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates.
Length = 252
Score = 299 bits (767), Expect = e-100
Identities = 191/285 (67%), Positives = 216/285 (75%), Gaps = 41/285 (14%)
Query: 89 SPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAY 148
SPWYD L RP TDLLPLI GVRGVT+NP+I Q AIS+SNAYNDQFR LV+SGKDIE+AY
Sbjct: 1 SPWYDTLDRPATDLLPLI-RGVRGVTTNPSIIQAAISTSNAYNDQFRTLVESGKDIESAY 59
Query: 149 WELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNV 208
WELV+KDIQDACKLFE IYD+T DG VSVEVS RLADDTQG VEAAK+L KVVNR N+
Sbjct: 60 WELVVKDIQDACKLFEPIYDQT-EADGRVSVEVSARLADDTQGMVEAAKYLSKVVNRRNI 118
Query: 209 YIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSV 268
YIKIPATA +P+IK++I+ GISVNVTLIFS+A+YE V DA TSV
Sbjct: 119 YIKIPATAEGIPAIKDLIAAGISVNVTLIFSIAQYEAVADAG---------------TSV 163
Query: 269 ASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGA 328
AS FVSR+DTL+DKMLE+IG LDLRGKA VAQ LAY+LY++KF
Sbjct: 164 ASPFVSRIDTLMDKMLEQIG----LDLRGKAGVAQVTLAYKLYKQKF------------- 206
Query: 329 KKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVD 373
KKQR+LWAS S DTLYVAPLIG DTV+TMPDQAL+A VD
Sbjct: 207 KKQRVLWASFS-------DTLYVAPLIGCDTVTTMPDQALEAGVD 244
>gnl|CDD|129954 TIGR00876, tal_mycobact, transaldolase, mycobacterial type. This
model describes one of three related but easily
separable famiiles of known and putative transaldolases.
This family and the family typified by E. coli TalA and
TalB both contain experimentally verified examples
[Energy metabolism, Pentose phosphate pathway].
Length = 350
Score = 284 bits (728), Expect = 5e-93
Identities = 133/348 (38%), Positives = 200/348 (57%), Gaps = 8/348 (2%)
Query: 86 EGQSPWYDNLCRPV---TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSG 141
S W D++ R D L LI G + G TSNP+IF +AIS Y+ + EL G
Sbjct: 1 AEFSLWCDDIERDFLENGDFLELIDKGAICGATSNPSIFCEAISEGAFYDAEIAELAAKG 60
Query: 142 KDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHK 201
D +A L + DI AC ++++++G DG +S+E+ P LADD +++ A L K
Sbjct: 61 ADADAIIETLALDDILQACDALMPLWEDSDGNDGRISIEIDPFLADDAAKSIDEAIELFK 120
Query: 202 VVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLS- 260
+++RPN++IKIPA+ + +I +++ GI VNVTLIFS E+ DA E + +
Sbjct: 121 ILDRPNLFIKIPASEAGIEAISALLAAGIPVNVTLIFSPKIAGEIADALAKEAEKARQAG 180
Query: 261 -DLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGP- 318
LS++ +VASFFVSR D IDK+L+KIG+ +AL+L+ +A +A A LAY Y++ F
Sbjct: 181 HSLSKIHAVASFFVSRFDKEIDKLLDKIGSRQALELQAQAGIANARLAYATYREVFEDSD 240
Query: 319 RWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS 378
+ + + AK QR L+AST VKN D LY+ L +++T P++A+ A D G +
Sbjct: 241 CYRQIKQDAAKLQRPLFASTGVKNNDLADDLYIKALCAKHSINTAPEEAIDAVADDGNIE 300
Query: 379 -RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLL 425
T S+AE + L GID +LE EG+ +F+ SF+ LL
Sbjct: 301 CDTPLGTASDAEAFFDELGAHGIDLEDTAAKLEEEGLIAFEASFEELL 348
>gnl|CDD|216195 pfam00923, Transaldolase, Transaldolase.
Length = 244
Score = 225 bits (577), Expect = 1e-71
Identities = 100/265 (37%), Positives = 129/265 (48%), Gaps = 55/265 (20%)
Query: 109 GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168
+ GVT+NP+IF KAI S Y++ E+ + G D E AY EL Y+
Sbjct: 19 PIDGVTTNPSIFLKAIEYSALYDEAIAEIKEIGGDDEEAYEELRP------------GYE 66
Query: 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQ 228
G DG VS+EV PRLADDT+GT+ A+ L + RPNV IKIPAT + +IKE+ ++
Sbjct: 67 ILKGIDGRVSLEVDPRLADDTEGTIAEARRLIALYGRPNVLIKIPATWEGLKAIKELSAE 126
Query: 229 GISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIG 288
GI+VNVTLIFSLA+ +A SV S FV R+D DK L
Sbjct: 127 GINVNVTLIFSLAQALAAAEAG---------------ASVISPFVGRIDDWGDKRLGA-- 169
Query: 289 TPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDT 348
LRG VA A YQ Y+K W ST V ++ +
Sbjct: 170 -----ALRGDDGVANAKEIYQYYKKY----GW----------------STGVLAASFRNV 204
Query: 349 LYVAPLIGPDTVSTMPDQALQAFVD 373
LYV L G DT+ T+P L+A
Sbjct: 205 LYVLALAGCDTI-TIPPDTLEALAK 228
>gnl|CDD|235171 PRK03903, PRK03903, transaldolase; Provisional.
Length = 274
Score = 183 bits (466), Expect = 7e-55
Identities = 95/302 (31%), Positives = 154/302 (50%), Gaps = 30/302 (9%)
Query: 129 AYNDQFREL-VQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLAD 187
AY D+ +L + K+I Y EL IKDI+ A +Y+ DG++S+E+ P L D
Sbjct: 1 AYKDEIAKLKGKKAKEI---YEELAIKDIKKAADKLLPLYE--KPDDGFISIEIDPFLED 55
Query: 188 DTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVI 247
D G++E K L+K + RPNV IK+PAT ++ ++ +GISVN TLIFS + +E
Sbjct: 56 DAAGSIEEGKRLYKTIGRPNVMIKVPATKAGYEAMSALMKKGISVNATLIFSPEQAKECA 115
Query: 248 DAYLDGLEASGLSDLSRVTSVASFFVSRVDTLID-KMLEKIGTPEALDLRGKAAVAQAAL 306
+A +GL+ + +V S FVSR D L+D K+ K +L+ K+ + A
Sbjct: 116 EALNEGLKKNT----KDPKAVISVFVSRFDRLLDPKLAPK-------NLQAKSGIMNATK 164
Query: 307 AYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQ 366
Y + + K R L+AST VK P Y+ L+ ++++T P
Sbjct: 165 CYNQIE------------QHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSINTAPLD 212
Query: 367 ALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLD 426
++AF+ G L + E E + L+ ID +L +G+++FK++F+ +L
Sbjct: 213 TIEAFLKDGNTEPKKPLKIEEIEAFFKELKSHNIDLENTYQKLLKDGLEAFKQAFEDILK 272
Query: 427 TL 428
+L
Sbjct: 273 SL 274
>gnl|CDD|223254 COG0176, MipB, Transaldolase [Carbohydrate transport and
metabolism].
Length = 239
Score = 147 bits (374), Expect = 9e-42
Identities = 73/303 (24%), Positives = 109/303 (35%), Gaps = 93/303 (30%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
V GVT+NP++ KA + E +
Sbjct: 29 VDGVTTNPSLILKAGAKP--------------------------------RDAVEFGKEI 56
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
G V+ EV L+ D + +E A+ L K+++ + IKIPAT + +IK + ++G
Sbjct: 57 LKIVPGRVT-EVDEVLSFDAEAMIEEARRLAKLIDNVGIVIKIPATWEGLKAIKALEAEG 115
Query: 230 ISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSR-VDTLIDKMLEKIG 288
I NVTLIFS A+ A L + + S FV R D ID ML
Sbjct: 116 IKTNVTLIFSAAQ------ALLAAEAGA---------TYISPFVGRIDDWGIDGML---- 156
Query: 289 TPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDT 348
+A+A Y Y++ A T V + +P+
Sbjct: 157 -----------GIAEAREIYDYYKQHG--------------------AKTLVASARFPNH 185
Query: 349 LYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQ 408
+Y+A L G D + T+P L+ + HG EGI K DW +
Sbjct: 186 VYIAALAGADVL-TIPPDLLKQLLKHG----GAMAVPLLDEGI----RKFAKDWEKLLKS 236
Query: 409 LEL 411
L
Sbjct: 237 LSE 239
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 68.0 bits (167), Expect = 4e-13
Identities = 59/274 (21%), Positives = 98/274 (35%), Gaps = 92/274 (33%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
+ GVT+NP++ K+ +E V+K+I +
Sbjct: 21 LDGVTTNPSLIAKSGRID---------------------FEAVLKEICEI---------- 49
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
DG VS +V ++ D +G V A+ L + NV +KIP T + +IK++ +G
Sbjct: 50 ---IDGPVSAQV---VSTDAEGMVAEARKLASLG--GNVVVKIPVTEDGLKAIKKLSEEG 101
Query: 230 ISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRV-DTLIDKMLEKIG 288
I NVT IFS A+ A S FV R+ D D M
Sbjct: 102 IKTNVTAIFSAAQALLAAKAGAT---------------YVSPFVGRIDDLGGDGM----- 141
Query: 289 TPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDT 348
+ + + Y ++L A S++NP +
Sbjct: 142 ----------ELIREIRTIFDNYG----------------FDTKILAA--SIRNPQH--- 170
Query: 349 LYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTID 382
+ A L G D + T+P L+ + H + ++
Sbjct: 171 VIEAALAGADAI-TLPPDVLEQLLKHPLTDKGVE 203
>gnl|CDD|234947 PRK01362, PRK01362, putative translaldolase; Provisional.
Length = 214
Score = 62.5 bits (153), Expect = 2e-11
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 40/130 (30%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
+ GVT+NP++ K G+D E VIK+I C +
Sbjct: 22 LDGVTTNPSLIAK-----------------EGRDFEE-----VIKEI---CSIV------ 50
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
DG VS EV +A D +G ++ + L K+ PNV +KIP T + ++K + +G
Sbjct: 51 ----DGPVSAEV---IALDAEGMIKEGRELAKI--APNVVVKIPMTPEGLKAVKALSKEG 101
Query: 230 ISVNVTLIFS 239
I NVTLIFS
Sbjct: 102 IKTNVTLIFS 111
>gnl|CDD|240406 PTZ00411, PTZ00411, transaldolase-like protein; Provisional.
Length = 333
Score = 56.7 bits (137), Expect = 8e-09
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 174 DGYVSVEVSPRLADDTQGTVEAAKWLHK-----VVNRPNVYIKIPATAPCVPSIKEVISQ 228
G VS EV RL+ D Q V+ A+ + K +++ + IK+ +T + + K + +
Sbjct: 100 PGRVSTEVDARLSFDKQAMVDKARKIIKMYEEAGISKDRILIKLASTWEGIQAAKALEKE 159
Query: 229 GISVNVTLIFSLA 241
GI N+TL+FS A
Sbjct: 160 GIHCNLTLLFSFA 172
>gnl|CDD|188644 cd00957, Transaldolase_TalAB, Transaldolases including both TalA
and TalB. Transaldolases including both TalA and TalB.
The enzyme catalyses the reversible transfer of a
dyhydroxyacetone moiety, derived from
fructose-6-phosphate to erythrose-4-phosphate yielding
sedoheptulose-7-phosphate and
glyceraldehyde-3-phosphate. The catalytic mechanism is
similar to other class I aldolases. The enzyme is found
in the non-oxidative branch of the pentose phosphate
pathway and forms a dimer in solution.
Length = 313
Score = 56.5 bits (137), Expect = 8e-09
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 20/140 (14%)
Query: 113 VTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQD------ACKLFESI 166
T+NP++ A + YN E + K + E I + D ++ + I
Sbjct: 30 ATTNPSLILAA-AKLPEYNKLVDEAIAYAKK-KGGSDEDQISNALDKLLVNFGTEILKLI 87
Query: 167 YDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPS 221
G VS EV RL+ DT T+ A+ L K+ +++ + IKI AT + +
Sbjct: 88 -------PGRVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKIAATWEGIQA 140
Query: 222 IKEVISQGISVNVTLIFSLA 241
K++ +GI N+TL+FS A
Sbjct: 141 AKQLEKEGIHCNLTLLFSFA 160
>gnl|CDD|183481 PRK12376, PRK12376, putative translaldolase; Provisional.
Length = 236
Score = 53.8 bits (130), Expect = 3e-08
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 16/83 (19%)
Query: 206 PNVYIKIPATA----PCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSD 261
NVY+KIP T +P IK++ + G+ +NVT IF++ + +EV+DA G
Sbjct: 85 ENVYVKIPITNTKGESTIPLIKKLSADGVKLNVTAIFTIEQVKEVVDALTPG-------- 136
Query: 262 LSRVTSVASFFVSRV-DTLIDKM 283
V ++ S F R+ DT +D +
Sbjct: 137 ---VPAIVSVFAGRIADTGVDPV 156
>gnl|CDD|129953 TIGR00875, fsa_talC_mipB, fructose-6-phosphate aldolase, TalC/MipB
family. This model represents a family that includes
the E. coli transaldolase homologs TalC and MipB, both
shown to be fructose-6-phosphate aldolases rather than
transaldolases as previously thought. It is related to
but distinct from the transaldolase family of E. coli
TalA and TalB. The member from Bacillus subtilis becomes
phosphorylated during early stationary phase but not
during exponential growth [Energy metabolism, Pentose
phosphate pathway].
Length = 213
Score = 53.3 bits (128), Expect = 3e-08
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 40/133 (30%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
+ GVT+NP++ K G+ WE V+K+IQ+A
Sbjct: 22 LAGVTTNPSLIAK-----------------EGRSF----WE-VLKEIQEAV--------- 50
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
+G VS E D +G VE AK L K+ PN+ +KIP T+ + ++K + +G
Sbjct: 51 ----EGPVSAETISL---DAEGMVEEAKELAKLA--PNIVVKIPMTSEGLKAVKILKKEG 101
Query: 230 ISVNVTLIFSLAR 242
I NVTL+FS A+
Sbjct: 102 IKTNVTLVFSAAQ 114
>gnl|CDD|235381 PRK05269, PRK05269, transaldolase B; Provisional.
Length = 318
Score = 53.6 bits (130), Expect = 7e-08
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 113 VTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQD------ACKLFESI 166
T+NP++ KA + Y + V K I D D ++ + I
Sbjct: 32 ATTNPSLILKA-AQIPEYAPLIDDAVAWAKQQSGDR-AQQIDDAIDKLAVNFGLEILKLI 89
Query: 167 YDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPS 221
G VS EV RL+ DT+ T+ A+ L + +++ + IKI +T + +
Sbjct: 90 -------PGRVSTEVDARLSFDTEATIAKARKLIALYEEAGISKDRILIKIASTWEGIRA 142
Query: 222 IKEVISQGISVNVTLIFSLA 241
+++ +GI+ N+TL+FS A
Sbjct: 143 AEQLEKEGINCNLTLLFSFA 162
>gnl|CDD|162081 TIGR00874, talAB, transaldolase. This family includes the majority
of known and predicted transaldolase sequences,
including E. coli TalA and TalB. It excluded two other
families. The first includes E. coli transaldolase-like
protein TalC. The second family includes the putative
transaldolases of Helicobacter pylori and Mycobacterium
tuberculosis [Energy metabolism, Pentose phosphate
pathway].
Length = 317
Score = 53.2 bits (128), Expect = 1e-07
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKEVISQG 229
G VS EV RL+ DT+ TVE A+ L K+ V++ + IKI +T + + +E+ +G
Sbjct: 89 GRVSTEVDARLSFDTEATVEKARHLIKLYEDAGVDKKRILIKIASTWEGIRAAEELEKEG 148
Query: 230 ISVNVTLIFSLAR 242
I N+TL+FS +
Sbjct: 149 IHCNLTLLFSFVQ 161
>gnl|CDD|183655 PRK12655, PRK12655, fructose-6-phosphate aldolase; Reviewed.
Length = 220
Score = 47.4 bits (113), Expect = 3e-06
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 38/133 (28%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
+ GVT+NP+I + S + I WE V+ +Q A
Sbjct: 22 IAGVTTNPSI-----------------IAASKESI----WE-VLPRLQKAI--------- 50
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
GG+G + + ++ D QG VE AK L + P + +KIP TA + +IK++ +G
Sbjct: 51 --GGEGILFAQT---MSRDAQGMVEEAKRLRNAI--PGIVVKIPVTAEGLAAIKKLKKEG 103
Query: 230 ISVNVTLIFSLAR 242
I T ++S A+
Sbjct: 104 IPTLGTAVYSAAQ 116
>gnl|CDD|131189 TIGR02134, transald_staph, transaldolase. This small family of
proteins is a member of the transaldolase sybfamily
represented by pfam00923. Coxiella and Staphylococcus
lack members of the known transaldolase equivalog
families and appear to require a transaldolase activity
for completion of the pentose phosphate pathway [Energy
metabolism, Pentose phosphate pathway].
Length = 236
Score = 46.8 bits (111), Expect = 6e-06
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 56/180 (31%)
Query: 110 VRGVTSNPAIFQKA-ISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168
V+G T+NP++ +KA I A+ + + I D
Sbjct: 27 VKGFTTNPSLMRKAGIVDYEAFAHE------------------ALAQITDLP-------- 60
Query: 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAP----CVPSIKE 224
+S EV ADD + A+++ N NV +KIP T P I++
Sbjct: 61 --------ISFEV---FADDLDEMEKEARYIASWGN--NVNVKIPVTNTKGESTGPLIQK 107
Query: 225 VISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRV-DTLIDKM 283
+ + GI++NVT + ++ + E+V ++ DG V + S F R+ DT +D
Sbjct: 108 LSADGITLNVTALTTIEQVEKVCQSFTDG-----------VPGIVSVFAGRIADTGVDPE 156
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 42.0 bits (99), Expect = 4e-04
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKEVISQG 229
G VS EV RL+ DT+ T+ A+ L + ++R V IKI +T + + + + +G
Sbjct: 95 GRVSTEVDARLSYDTEATIAKARKLISLYEDAGISRDRVLIKIASTWEGIKAAEVLEKEG 154
Query: 230 ISVNVTLIFSL 240
I N+TL+F
Sbjct: 155 IHCNLTLLFGF 165
>gnl|CDD|183458 PRK12346, PRK12346, transaldolase A; Provisional.
Length = 316
Score = 40.5 bits (95), Expect = 0.001
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 175 GYVSVEVSPRLADDTQGTVEAAKWL-----HKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
G VS EV RL+ D + ++E A+ L + +++ + IK+ +T + + +E+ +G
Sbjct: 90 GRVSTEVDARLSFDREKSIEKARHLVDLYQQQGIDKSRILIKLASTWEGIRAAEELEKEG 149
Query: 230 ISVNVTLIFSLAR 242
I+ N+TL+FS A+
Sbjct: 150 INCNLTLLFSFAQ 162
>gnl|CDD|183653 PRK12653, PRK12653, fructose-6-phosphate aldolase; Reviewed.
Length = 220
Score = 36.7 bits (85), Expect = 0.011
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 43/141 (30%)
Query: 102 LLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACK 161
+ PL GVT+NP+I + K +E +L +A
Sbjct: 19 IFPL-----AGVTTNPSI-----------------IAAGKKPLEVVLPQL-----HEAM- 50
Query: 162 LFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPS 221
GG G + +V +A +G V A+ L ++ ++ +K+P TA + +
Sbjct: 51 ----------GGQGRLFAQV---MATTAEGMVNDARKLRSII--ADIVVKVPVTAEGLAA 95
Query: 222 IKEVISQGISVNVTLIFSLAR 242
IK + ++GI T ++ A+
Sbjct: 96 IKMLKAEGIPTLGTAVYGAAQ 116
>gnl|CDD|183656 PRK12656, PRK12656, fructose-6-phosphate aldolase; Reviewed.
Length = 222
Score = 35.1 bits (81), Expect = 0.048
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 45/141 (31%)
Query: 101 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDAC 160
++LPL GVTSNP+I +K G
Sbjct: 18 EILPL-----AGVTSNPSIAKKE-----------------GDI----------------- 38
Query: 161 KLFESIYD--ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPC 218
FE I + E G + + V+V +A D +G ++ A + + +VYIK+P T
Sbjct: 39 DFFERIREVREIIGDEASIHVQV---VAQDYEGILKDAHEIRRQCGD-DVYIKVPVTPAG 94
Query: 219 VPSIKEVISQGISVNVTLIFS 239
+ +IK + ++G + T I++
Sbjct: 95 LAAIKTLKAEGYHITATAIYT 115
>gnl|CDD|214552 smart00197, SAA, Serum amyloid A proteins. Serum amyloid A
proteins are induced during the acute-phase response.
Secondary amyloidosis is characterised by the
extracellular accumulation in tissues of SAA proteins.
SAA proteins are apolipoproteins.
Length = 103
Score = 32.1 bits (73), Expect = 0.13
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 134 FRELVQSGKDIEAAYWELVIKDIQDACKLFESI--YDETNGGDG-------------YVS 178
F+E +Q D+ AY ++ + Q+A K F + YD G G Y
Sbjct: 5 FKEALQGAWDMWRAYRDMKEANHQNADKYFHARGNYDAAQRGPGGVWAAKVISDAREYFQ 64
Query: 179 VEVSPRLADDTQGTVEAAKW 198
+S R +D++ +A +W
Sbjct: 65 GLISGRGLEDSKADQKANEW 84
>gnl|CDD|215381 PLN02711, PLN02711, Probable galactinol--sucrose
galactosyltransferase.
Length = 777
Score = 34.4 bits (79), Expect = 0.15
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 335 WASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSA 394
W P P++ VAP + P TM D A+ V++G +L EG++S
Sbjct: 334 WGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAYQMYEGLHSH 393
Query: 395 LEKLGID 401
L+ +GID
Sbjct: 394 LQSVGID 400
>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit
[Amino acid transport and metabolism].
Length = 163
Score = 31.5 bits (72), Expect = 0.41
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 20/106 (18%)
Query: 184 RLADDTQGTVEAA-KWLHKVVNRPNV--------------YIKIPATAPCVPSIKEV--I 226
+ + +E K L+K+++ V IK+ A I + I
Sbjct: 50 IVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIARITEI 109
Query: 227 SQGISVNVT---LIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVA 269
+ V+V+ L L EE I+A++ L G+ +++R VA
Sbjct: 110 FRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVA 155
>gnl|CDD|233871 TIGR02444, TIGR02444, TIGR02444 family protein. Members of this
family are bacterial hypothetical proteins, about 160
amino acids in length, found in various Proteobacteria,
including members of the genera Pseudomonas and Vibrio.
The C-terminal region is poorly conserved and is not
included in the model [Hypothetical proteins,
Conserved].
Length = 116
Score = 30.5 bits (69), Expect = 0.66
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 43 VASSQLTLRNNHPLKASLVVKCSQSGGNGSSAKRTTLHDLYEQEGQSPWYDNLCRPVTDL 102
VA + L L++N +L++ G + + + Q W +++ RP+ +
Sbjct: 17 VAEACLALQDNFGGNVNLLLLFLWLAERGLAFDEQEIAQV--QACAGTWSEDVVRPLRAV 74
>gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain,
N-terminal domain. Carbamoyl-phosphate synthase
catalyzes the ATP-dependent synthesis of
carbamyl-phosphate from glutamine or ammonia and
bicarbonate. This important enzyme initiates both the
urea cycle and the biosynthesis of arginine and/or
pyrimidines. The carbamoyl-phosphate synthase (CPS)
enzyme in prokaryotes is a heterodimer of a small and
large chain. The small chain promotes the hydrolysis of
glutamine to ammonia, which is used by the large chain
to synthesise carbamoyl phosphate. See pfam00988. The
small chain has a GATase domain in the carboxyl
terminus. See pfam00117.
Length = 108
Score = 30.1 bits (69), Expect = 0.67
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 357 PDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGID 401
PDTVST A +A+ + LN+ E I EK G D
Sbjct: 34 PDTVSTHVRLADEAYFLGPGPASESYLNI---ERILDIAEKEGAD 75
>gnl|CDD|224514 COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB
family [General function prediction only].
Length = 73
Score = 28.1 bits (63), Expect = 2.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 391 IYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQE 430
Y AL + D YV + +L G S ++ + L +E
Sbjct: 3 RYPALIEKDEDGGYVASVPDLPGCHSQGETLEEALQNAKE 42
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 29.9 bits (68), Expect = 2.6
Identities = 27/164 (16%), Positives = 48/164 (29%), Gaps = 56/164 (34%)
Query: 244 EEVIDAYLDGLEASG-------LSDLSRVTSVASF--------------FVSRVDTL-ID 281
V +A L L A+G L L + F + +
Sbjct: 266 AAVAEAALAKLAAAGVTFVELDLPGLHELNEAVGFPIALYEALADLRAYLRENGAGVSFE 325
Query: 282 KMLEKIGTPEA--------LDLRGKAAVAQAALAY------QLYQKKFSGPRWDALVKKG 327
+++ +I +P+ + +AAL Y++ F+ DA++
Sbjct: 326 ELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARHGLDAIL--- 382
Query: 328 AKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAF 371
+P T AP IG D + A+ F
Sbjct: 383 -----------------FPTTPLTAPPIGDDDTVILNGAAVPTF 409
>gnl|CDD|133006 cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates
N-acetylneuraminic acid by adding CMP moiety.
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc
synthetase) or acylneuraminate cytidylyltransferase
catalyzes the transfer the CMP moiety of CTP to the
anomeric hydroxyl group of NeuAc in the presence of
Mg++. It is the second to last step in the sialylation
of the oligosaccharide component of glycoconjugates by
providing the activated sugar-nucleotide cytidine
5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac),
the substrate for sialyltransferases. Eukaryotic
CMP-NeuAc synthetases are predominantly located in the
nucleus. The activated CMP-Neu5Ac diffuses from the
nucleus into the cytoplasm.
Length = 223
Score = 29.0 bits (66), Expect = 3.8
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 182 SPRLADDTQGTVE----AAKWLHKVVNRPNVYIKIPATAPCVPS--IKEVISQGISVNVT 235
LA DT +++ A L ++ ++ + + T+P + I E I +S
Sbjct: 70 PAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGAD 129
Query: 236 LIFSLARYE 244
+FS+ +
Sbjct: 130 SVFSVTEFH 138
>gnl|CDD|238988 cd02030, NDUO42, NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is
a family of proteins that are highly similar to
deoxyribonucleoside kinases (dNK). Members of this
family have been identified as one of the subunits of
NADH:Ubiquinone oxioreductase (complex I), a
multi-protein complex located in the inner mitochondrial
membrane. The main function of the complex is to
transport electrons from NADH to ubiquinone, which is
accompanied by the translocation of protons from the
mitochondrial matrix to the inter membrane space.
Length = 219
Score = 28.9 bits (65), Expect = 4.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 142 KDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVE 180
+DIE AY + + +I + ++ YD T GD VE
Sbjct: 177 QDIENAYKKTFLPEISEHSEVL--QYDWTEAGDTEKVVE 213
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a
homotetramer. Some forms are active only in the presence
of fructose-1,6-bisphosphate or similar phosphorylated
sugars [Energy metabolism, Glycolysis/gluconeogenesis].
Length = 473
Score = 29.2 bits (66), Expect = 5.2
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 25/124 (20%)
Query: 174 DGYVSVEVSPRLADDTQGTVEAAKWL--HKVVNRPNVYIKIPATAPCVPSIKEVISQGIS 231
DG +S+ V D V L K VN P + +PA + K+ + G+
Sbjct: 126 DGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNLPGADVDLPALS---EKDKKDLKFGVE 182
Query: 232 VNVTLIF-SLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTP 290
V ++ S R E + + L G D+ K++ KI
Sbjct: 183 QGVDMVAASFVRTAEDVLEVREVLGEKGAKDV-------------------KIIAKIENQ 223
Query: 291 EALD 294
E +D
Sbjct: 224 EGVD 227
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 28.7 bits (65), Expect = 7.1
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 174 DGYVSVEVSPRLADDTQGTVEAAKWL--HKVVNRPNVYIKIPA-TAPCVPSIKEVISQGI 230
DG + + V D V L +K VN P V + +PA T +K + QG+
Sbjct: 130 DGKIELRVVEVDGDAVITRVLNGGVLSSNKGVNLPGVDLSLPALTEKDKEDLKFGLEQGV 189
>gnl|CDD|110106 pfam01081, Aldolase, KDPG and KHG aldolase. This family includes
the following members: 4-hydroxy-2-oxoglutarate aldolase
(KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate
aldolase (KDPG-aldolase).
Length = 196
Score = 27.8 bits (62), Expect = 7.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 151 LVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYI 210
+VIKD +DA L E++ G +EV+ R T ++A + L K NRP+ +
Sbjct: 14 IVIKDKEDALPLAEALAA-----GGIRVLEVTLR----TPCALDAIRLLRK--NRPDALV 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.129 0.364
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,596,482
Number of extensions: 2088113
Number of successful extensions: 1681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1642
Number of HSP's successfully gapped: 47
Length of query: 440
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 340
Effective length of database: 6,502,202
Effective search space: 2210748680
Effective search space used: 2210748680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.1 bits)