RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 036665
(440 letters)
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold,
transferase; 2.10A {Corynebacterium glutamicum}
Length = 360
Score = 437 bits (1126), Expect = e-153
Identities = 167/362 (46%), Positives = 235/362 (64%), Gaps = 12/362 (3%)
Query: 77 TTLHDLYEQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYND 132
+ + DL Q G S W D+L R +L +I V GVT+NPAIF A+S ++Y+
Sbjct: 2 SHIDDL-AQLGTSTWLDDLSRERITSGNLSQVIEEKSVVGVTTNPAIFAAAMSKGDSYDA 60
Query: 133 QFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGT 192
Q EL +G ++ A + + I D+++AC LF I++ +NG DG VS+EV PR++ D T
Sbjct: 61 QIAELKAAGASVDQAVYAMSIDDVRNACDLFTGIFESSNGYDGRVSIEVDPRISADRDAT 120
Query: 193 VEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLD 252
+ AK L V+RPNV IKIPAT +P+I + +++GISVNVTLIFS+ARY EVI A+++
Sbjct: 121 LAQAKELWAKVDRPNVMIKIPATPGSLPAITDALAEGISVNVTLIFSVARYREVIAAFIE 180
Query: 253 GLE--ASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQL 310
G++ A+ D+S++ SVASFFVSRVD IDK LE IG+ EAL LRGKA VA A AY +
Sbjct: 181 GIKQAAANGHDVSKIHSVASFFVSRVDVEIDKRLEAIGSDEALALRGKAGVANAQRAYAV 240
Query: 311 YQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQA 370
Y++ F +GA QR LWAST VKNPAY TLYV+ L GP+TV+TMP+ + A
Sbjct: 241 YKELFDAAEL----PEGANTQRPLWASTGVKNPAYAATLYVSELAGPNTVNTMPEGTIDA 296
Query: 371 FVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQ 429
++ G + T+ + +EA+ ++S LE LG+D V LE EGVD F S+ LL++++
Sbjct: 297 VLEQGNLHGDTLSNSAAEADAVFSQLEALGVDLADVFQVLETEGVDKFVASWSELLESME 356
Query: 430 EK 431
+
Sbjct: 357 AR 358
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente
structural genomics, JCSG, protein structure initiative,
PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Length = 352
Score = 425 bits (1094), Expect = e-148
Identities = 145/357 (40%), Positives = 212/357 (59%), Gaps = 13/357 (3%)
Query: 77 TTLHDLYEQEGQSPWYDNLCRPVTD---LLPLIASGVRGVTSNPAIFQKAISSSNAYNDQ 133
T L D+ + GQ W DNL R + L ++ GV GVTSNPAIFQKA + Y D+
Sbjct: 3 TILSDV-KALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADE 61
Query: 134 FRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTV 193
L + + Y + + D++ AC + + ++ T G G+VS+EVSP LA D QGTV
Sbjct: 62 VAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTV 121
Query: 194 EAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDG 253
E A+ LH + R N IK+PAT + +++ ++S GISVN+TL+FS A+ + AY G
Sbjct: 122 EEARRLHAAIARKNAMIKVPATDAGIDALETLVSDGISVNLTLLFSRAQTLKAYAAYARG 181
Query: 254 LEA--SGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLY 311
+ + ++ + VASFF+SRVD+ +D L L+GK A+A A AYQ +
Sbjct: 182 IAKRLAAGQSVAHIQVVASFFISRVDSALDATLPD-------RLKGKTAIALAKAAYQDW 234
Query: 312 QKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAF 371
++ F+ P + AL +GA + +LLWAST VKNPAYPDTLYV LIG TV+T+PD L+AF
Sbjct: 235 EQYFTAPEFAALEAQGANRVQLLWASTGVKNPAYPDTLYVDSLIGVHTVNTVPDATLKAF 294
Query: 372 VDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 428
+DHG T+ + EA + + LGID + +L+ +G+ F+++F+ LL L
Sbjct: 295 IDHGTAKATLTESADEARARLAEIAALGIDVETLAARLQEDGLKQFEEAFEKLLAPL 351
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 81.2 bits (200), Expect = 2e-16
Identities = 79/485 (16%), Positives = 145/485 (29%), Gaps = 126/485 (25%)
Query: 14 SSSLKPRSSSSSL---PKSLISLQTK-TGF-NSKVASSQLT-----------------LR 51
+ L + + P + L K G+ +S V S++ L
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 52 NN--HPLKASLVVKCSQSGGNGSSAKRTTLHDLYEQEGQSPWYDNLCRPVTDLLP--LIA 107
N H +L K Q + + + + RP L
Sbjct: 98 GNDIH----ALAAKLLQENDTTLVKTKELIKNYITARIMAK------RPFDKKSNSALFR 147
Query: 108 SGVRGVTSNPAIF--QKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFES 165
+ G AIF Q +++ Y F EL +D+ Y LV I+ + +
Sbjct: 148 AVGEGNAQLVAIFGGQ---GNTDDY---FEEL----RDLYQTYHVLVGDLIKFSAETLSE 197
Query: 166 IYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNV-YIKIPATAPCVPSIKE 224
+ +++ TQG + +WL N P+ Y+ + P
Sbjct: 198 LIRT--------TLDAEKVF---TQG-LNILEWLENPSNTPDKDYL---LSIP------- 235
Query: 225 VISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTS------VASFFVSRVDT 278
IS + + LA Y V+ A L G L + + V + ++ D+
Sbjct: 236 -----ISCPLIGVIQLAHY--VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 279 ------LIDKMLE---KIGTPEALDLRGKAAVAQAALAYQLYQKKFSG----PRWDALVK 325
+ K + IG +R A +L + + P L
Sbjct: 289 WESFFVSVRKAITVLFFIG------VRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLSI 341
Query: 326 KGAKKQRLLWASTSVK--NPAYPDT--LYVAPLI-GPDT-VSTMPDQALQAFVDH-GAVS 378
++++ V N P + ++ L+ G V + P Q+L
Sbjct: 342 SNLTQEQVQ---DYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 379 RTIDLNVSEAEGIYSALEKLGIDWNY--VG----TQLELEGVDSFKKSFDSLLDTLQEKA 432
L+ S +S KL + V + L L D + + + A
Sbjct: 398 APSGLDQSRIP--FSE-RKLKFSNRFLPVASPFHSHL-LVPASDLINK-DLVKNNVSFNA 452
Query: 433 NSLKL 437
+++
Sbjct: 453 KDIQI 457
Score = 56.6 bits (136), Expect = 1e-08
Identities = 65/395 (16%), Positives = 105/395 (26%), Gaps = 157/395 (39%)
Query: 65 SQSGGNGSSAKRTTLHDLYEQEGQSP-----WYDNLCRPVTDLLPLIASGVRGVTSNPAI 119
SQ G G DLY+ S W + D + V +NP
Sbjct: 1626 SQEQGMG--------MDLYKT---SKAAQDVW-NRADNHFKDTYGFSILDI--VINNPV- 1670
Query: 120 FQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSV 179
I F + GK I Y ++ + I D E I+ E N +
Sbjct: 1671 -NLTI--------HFGG--EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 180 EVSPR-LADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIF 238
S + L TQ T P + +
Sbjct: 1720 R-SEKGLLSATQ-------------F----------TQPAL----------------TLM 1739
Query: 239 SLARYEEVIDAYLDGLEASGLSDLSRVTSVA--SFFVSRVDTLIDKMLEKIGTPE--ALD 294
A +E+ L++ GL A S +G E AL
Sbjct: 1740 EKAAFED--------LKSKGLIPADAT--FAGHS----------------LG--EYAAL- 1770
Query: 295 LRGKAAVAQAALAYQLYQKKFSGPRWDA--LVKKGAKKQRLLWASTSVKNPAYPDTLYVA 352
A++A ++ +V R + +V + Y
Sbjct: 1771 ----ASLAD-VMS-------IE----SLVEVV-----FYRGMTMQVAVPRDELGRSNYGM 1809
Query: 353 PLIGPDTVS-TMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNY--VGTQL 409
I P V+ + +ALQ V+ V + V NY Q
Sbjct: 1810 IAINPGRVAASFSQEALQYVVE--RVGKRTGWLVEIV--------------NYNVENQQY 1853
Query: 410 ----ELEGVDSFKKSFDSLLDTLQEKANSLKLVSL 440
+L +D+ +L+ + K + ++ L
Sbjct: 1854 VAAGDLRALDTVTN----VLNFI--KLQKIDIIEL 1882
Score = 48.9 bits (116), Expect = 3e-06
Identities = 59/374 (15%), Positives = 112/374 (29%), Gaps = 128/374 (34%)
Query: 79 LHDLYEQEGQSPWYDNLCR-PVTDLLPLIASGVRGVT--SNPAIFQKAISSSNAYNDQFR 135
+ + E +P D L P++ PLI GV ++ + K + + + R
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPIS--CPLI-----GVIQLAHYVVTAKLLGFTPG---ELR 264
Query: 136 ELVQS----GKDIEAAY-------WELVIKDIQDACK-LFESIYDETNGGDGYVSVEVSP 183
++ + + A WE ++ A LF I G E P
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-FI--------GVRCYEAYP 315
Query: 184 RLA---DDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVP--SIKEVISQGISVNVTLIF 238
+ + ++E + P P SI ++
Sbjct: 316 NTSLPPSILEDSLENNE-----------------GVPS-PMLSIS-----NLT------- 345
Query: 239 SLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEAL----- 293
+ ++ ++ L A ++S V + VS G P++L
Sbjct: 346 -QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-------------GPPQSLYGLNL 391
Query: 294 DLRGKAAVA---QAALAYQLYQKK------F---SGP-------RWDALVKKGAKKQRLL 334
LR A + Q+ + + ++K F + P L+ K K +
Sbjct: 392 TLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 335 WASTSVKNPAYPDTL------YVAPLIGP---DTVSTMP---DQALQAFVDH------GA 376
+ + ++ P Y DT ++ I D + +P + Q H G
Sbjct: 450 FNAKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 377 VSRTIDLNVSEAEG 390
S L +G
Sbjct: 509 ASGLGVLTHRNKDG 522
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational
selection, domain swapping transferase; HET: I22; 1.65A
{Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A*
3s1w_A*
Length = 223
Score = 74.9 bits (185), Expect = 1e-15
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 37/132 (28%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
V GVT+NP + K +GK +I++I
Sbjct: 22 VDGVTTNPTLISKE--------------AVNGKKYGD-----IIREILKIV--------- 53
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
DG VSVEV ++ +G VE A+ +H + N +KIP T + +IK + S+
Sbjct: 54 ----DGPVSVEV---VSTKYEGMVEEARKIHGLG--DNAVVKIPMTEDGLRAIKTLSSEH 104
Query: 230 ISVNVTLIFSLA 241
I+ N TL+F+
Sbjct: 105 INTNCTLVFNPI 116
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics,
JOI for structural genomics, JCSG; HET: GOL; 2.40A
{Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 74.6 bits (184), Expect = 2e-15
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 40/132 (30%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
V GVT+NP + K G + + +K+I D
Sbjct: 34 VDGVTTNPTLISK-----------------EGAEFKQ-----RVKEICDLV--------- 62
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
G VS EV ++ D +G V A+ L ++ V IKIP T + ++K + ++G
Sbjct: 63 ----KGPVSAEV---VSLDYEGMVREARELAQI--SEYVVIKIPMTPDGIKAVKTLSAEG 113
Query: 230 ISVNVTLIFSLA 241
I NVTL+FS A
Sbjct: 114 IKTNVTLVFSPA 125
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural
genomics, PSI-2, protein structure initiative; 2.79A
{Oleispira antarctica}
Length = 329
Score = 73.8 bits (181), Expect = 9e-15
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 111 RGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE- 169
T+NP++ KA + Y E + I+ KL +I E
Sbjct: 35 VDATTNPSLILKA-AKLANYQHLIEEAIDWALQIKGNDKNSQTTLENVGDKLAVNIGCEV 93
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKE 224
G +S EV RL+ DTQ TV A+ L ++ ++ + IKI +T + + K
Sbjct: 94 LTSIPGVISTEVDARLSFDTQATVAKARKLIRLYQDAGIDSDRILIKIASTWEGIQAAKI 153
Query: 225 VISQGISVNVTLIFSLAR 242
+ ++GI N+TL+F A+
Sbjct: 154 LEAEGIHCNLTLLFHFAQ 171
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt,
transferase; 1.40A {Escherichia coli} PDB: 3kof_A
1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Length = 337
Score = 73.8 bits (181), Expect = 1e-14
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 24/147 (16%)
Query: 109 GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGK--------DIEAAYWELVIKDIQDAC 160
+ T+NP++ A + Y + V K I A +L + +
Sbjct: 48 QPQDATTNPSLILNA-AQIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEIL 106
Query: 161 KLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPAT 215
KL G +S EV RL+ DT+ ++ AK L K+ ++ + IK+ +T
Sbjct: 107 KLV----------PGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLAST 156
Query: 216 APCVPSIKEVISQGISVNVTLIFSLAR 242
+ + +++ +GI+ N+TL+FS A+
Sbjct: 157 WQGIRAAEQLEKEGINCNLTLLFSFAQ 183
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A
{Bacillus subtilis}
Length = 212
Score = 69.9 bits (172), Expect = 5e-14
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 39/132 (29%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
+ GVT+NP++ K + +++I D
Sbjct: 22 LAGVTTNPSLVAKE----------------ANVSFHD-----RLREITDVV--------- 51
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
G VS EV ++ + +E K L K+ PN+ +KIP T+ + +++ + G
Sbjct: 52 ----KGSVSAEV---ISLKAEEMIEEGKELAKIA--PNITVKIPMTSDGLKAVRALTDLG 102
Query: 230 ISVNVTLIFSLA 241
I NVTLIF+
Sbjct: 103 IKTNVTLIFNAN 114
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain
swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Length = 220
Score = 69.2 bits (170), Expect = 8e-14
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 38/132 (28%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
+ GVT+NP+I K ++ +L +
Sbjct: 22 LAGVTTNPSIIAA-----------------GKKPLDVVLPQL--------HEAM------ 50
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
GG G + +V +A +G V A L ++ ++ +K+P TA + +IK + ++G
Sbjct: 51 --GGQGRLFAQV---MATTAEGMVNDALKLRSII--ADIVVKVPVTAEGLAAIKMLKAEG 103
Query: 230 ISVNVTLIFSLA 241
I T ++ A
Sbjct: 104 IPTLGTAVYGAA 115
>3tkf_A Transaldolase; structural genomics, center for structural genomics
of infec diseases, csgid, alpha-beta barrel/TIM barrel;
HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB:
3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Length = 345
Score = 70.4 bits (172), Expect = 1e-13
Identities = 61/326 (18%), Positives = 111/326 (34%), Gaps = 66/326 (20%)
Query: 111 RGVTSNPAIFQKAISSSNAYNDQFRELVQSGK-DIEAAYWELVIKDIQDACKLFESIYDE 169
T+NP++ KA Y++ E + K + + ++K+I ++ S +
Sbjct: 55 VDATTNPSLILKA-VKEQKYSNLVAETISKVKANNPDLNSDDLVKEIAI--EILVSFGIK 111
Query: 170 -TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIK 223
+ +G VS EV R++ ++ T++ AK + + + V I I AT + + K
Sbjct: 112 ILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAATWEGIKAAK 171
Query: 224 EVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKM 283
+ +GI+ N+TLIF A+ + +A + S FV R+ +
Sbjct: 172 LLQKEGINCNLTLIFDKAQAKACAEAG---------------VYLVSPFVGRITDWQMQQ 216
Query: 284 LEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNP 343
P D G +V Y+ + K T V
Sbjct: 217 NNLKTFPAIADDDGVNSVKAIYKLYKSHGFK-----------------------TIVMGA 253
Query: 344 AYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYS---------- 393
++ + V L G D ++ P + + + N
Sbjct: 254 SFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLTKNDDVVTQSPQISEADFRWLM 313
Query: 394 -----ALEKL--GIDWNYVGTQLELE 412
A KL GI + +ELE
Sbjct: 314 NENAMATHKLAEGIR-LFTKDTIELE 338
>1wx0_A Transaldolase; structural genomics, riken structural
genomics/proteomics initiative, RSGI, transferas; 2.27A
{Thermus thermophilus HB8} SCOP: c.1.10.1
Length = 223
Score = 67.7 bits (166), Expect = 3e-13
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 33/133 (24%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKD-IQDACKLFESIYD 168
+ GVT+NP + K + A E ++ C+
Sbjct: 22 LSGVTTNPTLVAK-----------------AFAAKGEALTEEAFAAHLRAICET------ 58
Query: 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQ 228
G VS EV A + + V + L + PN+ +K+P T + + K + ++
Sbjct: 59 ----VGGPVSAEV---TALEAEAMVAEGRRLAAI--HPNIVVKLPTTEEGLKACKRLSAE 109
Query: 229 GISVNVTLIFSLA 241
GI VN+TLIFS
Sbjct: 110 GIKVNMTLIFSAN 122
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1
PDB: 2cwn_A 1f05_A
Length = 331
Score = 68.8 bits (168), Expect = 5e-13
Identities = 73/342 (21%), Positives = 129/342 (37%), Gaps = 63/342 (18%)
Query: 111 RGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDET 170
+ T+NP++ A + AY + E + GK + E IK+ D KLF E
Sbjct: 37 QDATTNPSLILAA-AQMPAYQELVEEAIAYGKKLGGPQEE-QIKNAID--KLFVLFGAEI 92
Query: 171 NGG-DGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKE 224
G VS EV RL+ D V A+ L ++ V + + IK+ +T + + KE
Sbjct: 93 LKKIPGRVSTEVDARLSFDKDAMVARARRLIELYKEAGVGKDRILIKLSSTWEGIQAGKE 152
Query: 225 VISQ-GISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKM 283
+ Q GI N+TL+FS A+ +A G+ ++ S FV R+
Sbjct: 153 LEEQHGIHCNMTLLFSFAQAVACAEA---GV------------TLISPFVGRILDWHVAN 197
Query: 284 LEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNP 343
+K D G +V + Y+ + K T V
Sbjct: 198 TDKKSYEPQGD-PGVKSVTKIYNYYKKFGYK-----------------------TIVMGA 233
Query: 344 AYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGID-- 401
++ +T + L G D ++ P + D+ ++ + + ++ EK+ +D
Sbjct: 234 SFRNTGEIKALAGCDFLTISPKLLGELLKDNSKLAPALSVKAAQTSDS----EKIHLDEK 289
Query: 402 ---W----NYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLK 436
W + + + +G+ F L L E+ S +
Sbjct: 290 AFRWLHNEDQMAVEKLSDGIRKFAADAIKLERMLTERMFSAE 331
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt,
transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}
Length = 339
Score = 66.1 bits (161), Expect = 4e-12
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 111 RGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE- 169
+ T+NP++ A S Y V+ G+ I++ D K+ +
Sbjct: 42 QDSTTNPSLILAA-SKLEKYARFIDAAVEYGR-KHGKTDHEKIENAMD--KILVEFGTQI 97
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKE 224
G VS EV RL+ D + TV+ A + K+ V + V IKI +T + + +E
Sbjct: 98 LKVVPGRVSTEVDARLSFDKKATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARE 157
Query: 225 VISQ-GISVNVTLIFSLAR 242
+ + GI N+TL+FS +
Sbjct: 158 LEVKHGIHCNMTLLFSFTQ 176
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE;
1.90A {Prochlorococcus marinus str}
Length = 334
Score = 66.1 bits (161), Expect = 4e-12
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 111 RGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDET 170
R T+NP++ A + + Y + ++S ++ + + + ++ E
Sbjct: 31 RDATTNPSLILAA-AKNPDYVKLIDKAIESSENTLPNGFSEIELIKETVDQVSVFFGKEI 89
Query: 171 NGG-DGYVSVEVSPRLADDTQGTVEAAKWLHKV-----VNRPNVYIKIPATAPCVPSIKE 224
G VS EV RL+ DT+ TV+ A+ L + + + + IKI AT + + +
Sbjct: 90 LKIISGRVSTEVDARLSFDTEATVKKARKLINLYKNFGIEKERILIKIAATWEGIKAAEI 149
Query: 225 VISQGISVNVTLIFSLAR 242
+ +GI N+TL+F+ +
Sbjct: 150 LEKEGIKCNLTLLFNFCQ 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 53/335 (15%), Positives = 96/335 (28%), Gaps = 108/335 (32%)
Query: 93 DNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAY---W 149
+ C+ V D+ + + S ++ ++ S + W
Sbjct: 32 NFDCKDVQDMP-------KSILSK---------------EEIDHIIMSKDAVSGTLRLFW 69
Query: 150 ELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVY 209
L+ K + K E + N ++ + + T + ++ N V+
Sbjct: 70 TLLSKQEEMVQKFVEEV-LRINYK--FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 210 IKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVA 269
K NV+ R + + L L +L +V
Sbjct: 127 AKY--------------------NVS------RLQPYLK-----LR-QALLELRPAKNV- 153
Query: 270 SFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAK 329
LID +L G+ GK VA Q K
Sbjct: 154 ---------LIDGVL---GS-------GKTWVALDVCLSYKVQCKMDF------------ 182
Query: 330 KQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAE 389
++ W ++KN P+T+ L + D + DH S I L + +
Sbjct: 183 --KIFWL--NLKNCNSPETV----LEMLQKLLYQIDPNWTSRSDH---SSNIKLRIHSIQ 231
Query: 390 GIYSALEKLGIDWNYVGTQLELEGVDSFK--KSFD 422
+ L +L Y L L V + K +F+
Sbjct: 232 ---AELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 36.6 bits (85), Expect = 0.014
Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 26/162 (16%)
Query: 245 EVIDAYLDGLEASGLSDLS-RVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQ 303
+V+ + A+G+ V+ L+ ++L+ +G +
Sbjct: 165 DVLRLLHEASAAAGVRHHRIVVSHAR---------LVPRLLDALGISAS---------LS 206
Query: 304 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTM 363
A L + + L + A K L A+ +PA D + + +
Sbjct: 207 RAFLACLTSGNYVQ--FRELWQLHAAKDVDLLANLLTWSPAERDAAKRSREASDRELEAL 264
Query: 364 PDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYV 405
A V + AL G+ + V
Sbjct: 265 LRDA-VDPRAAADVRDAWR----YLCRLAEALHDSGLASDVV 301
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.071
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 16/42 (38%)
Query: 153 IKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVE 194
+K +Q + KL+ D++ +P LA + T+E
Sbjct: 22 LKKLQASLKLYA---DDS-----------APALA--IKATME 47
Score = 28.4 bits (62), Expect = 3.1
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 3 TISKLTNPAVSSSSLKPRSSSSSLP 27
+ KL +SLK + S+ P
Sbjct: 21 ALKKLQ------ASLKLYADDSA-P 38
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 32.5 bits (75), Expect = 0.22
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 367 ALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQ-----LELEGVDSFKKSF 421
A+ D + ++ E + L K+G LE + +K +
Sbjct: 255 AINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANFVLCRLENISG-EKLY 313
Query: 422 DSLL 425
DSLL
Sbjct: 314 DSLL 317
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase;
CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC,
sialic acid, glycosylation; HET: NCC; 2.80A {Mus
musculus} SCOP: c.68.1.13
Length = 229
Score = 32.2 bits (74), Expect = 0.25
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 182 SPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPS--IKEVISQGISVNVTLIFS 239
S + D+ +++A N ++ I AT+PC+ +++V +FS
Sbjct: 71 SSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFS 130
Query: 240 LARYE 244
+ R
Sbjct: 131 VVRRH 135
>2opt_A Actii protein; helical protein, TETR family, APO-protein,
transcriptional R transcription; 2.05A {Streptomyces
coelicolor} PDB: 3b6a_A* 3b6c_A*
Length = 234
Score = 31.7 bits (72), Expect = 0.37
Identities = 27/178 (15%), Positives = 52/178 (29%), Gaps = 60/178 (33%)
Query: 244 EEVIDAYLDGLEASGLSDLS----------RVTSVASFFVSR---VDTLIDKMLEKIGTP 290
+ ++ L L+A GL LS S+ + +R +D + D +L ++ P
Sbjct: 9 DRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVFDIVLTEVEVP 68
Query: 291 EALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLY 350
E R V + + + A+ D
Sbjct: 69 EPEPGRWAEQVKEMCRSL-----------RRMFL-------------------AHRDLAR 98
Query: 351 VA---PLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYV 405
+A +GP+ + M ++ + G L+ A L +V
Sbjct: 99 IAIDRVPLGPNGMVGM-ERTMNLLRSGG-------LHDELAAYGGDLL------STFV 142
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription,
simocyclinone regulator, TETR-family; 1.95A
{Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Length = 267
Score = 31.8 bits (72), Expect = 0.41
Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 61/179 (34%)
Query: 244 EEVIDAYLDGLEASGLSDLS----------RVTSVASFFVSR---VDTLIDKMLEKIGTP 290
++++ A + + G+ S S+ + ++ V+ ++D+++ + P
Sbjct: 30 DQIVRAAVKVADTEGVEAASMRRVAAELGAGTMSLYYYVPTKEDLVELMVDEVIGETRLP 89
Query: 291 EALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLY 350
+ +AA+ AA + +P
Sbjct: 90 DRPGPDWRAALTLAANEK-----------RALWL-------------------RHPWLAT 119
Query: 351 VA----PLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYV 405
P+ GP+++ + L L V E + YV
Sbjct: 120 AWRNGHPVWGPNSLRQQ-EFVLGTLGVFD-------LQVDELLSLIGLY------NGYV 164
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 30.0 bits (68), Expect = 0.41
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 28/106 (26%)
Query: 150 ELVIKDIQDACKLFESIYDETNGGDGY-VSVEVSPRLADDTQGTVEAAKWLHKVVNRPNV 208
E ++ ++ + + D V VE+S DD + + +
Sbjct: 20 ETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITR------- 72
Query: 209 YIKIPATAPCVPSIKEVISQGISVNVTL--IFSLARYEE----VID 248
+K+ I ++ V L +L + E V D
Sbjct: 73 ------------QLKDEI--LVTPRVKLVPKGALPKSEGKAVRVKD 104
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Length = 117
Score = 29.2 bits (65), Expect = 0.96
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 325 KKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDL- 383
K ++A S + + L G D +Q + S
Sbjct: 19 KDTVFNMLAMYALNSKNRGWWKHINII--LWGASVKLVANDTQVQTEILEMLQSGITIEA 76
Query: 384 --NVSEAEGIYSALEKLGIDWNYVGTQL 409
+ E G+ S + LGI Y+G L
Sbjct: 77 CQDCCENFGVASIITNLGITVRYMGIPL 104
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293,
TET streptomyces coelicolor A3(2), PSI-2; 1.70A
{Streptomyces coelicolor}
Length = 241
Score = 29.0 bits (65), Expect = 2.8
Identities = 25/178 (14%), Positives = 45/178 (25%), Gaps = 60/178 (33%)
Query: 244 EEVIDAYLDGLEASGLSDLS----------RVTSVASFFVSR---VDTLIDKMLEKIGTP 290
E+++DA + L A S +S+ F ++ + + D++L
Sbjct: 32 EQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRNKTELLRAVADRILLSAMDG 91
Query: 291 EALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLY 350
+ K + AL ++ P
Sbjct: 92 YRPEGDWKQRLTAVALRL-----------RESFG-------------------QQPQLAA 121
Query: 351 VA---PLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYV 405
V G + M ++ LQA G L E Y L +
Sbjct: 122 VWGRHGSGGTGSRLMM-EEVLQALRASG-------LPDDEIPARYHRL------VILI 165
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous
recombination, tandem repeats, three-helix bundle,
cytoplasm; 1.50A {Xanthomonas campestris PV}
Length = 162
Score = 28.1 bits (63), Expect = 3.7
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 244 EEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDT-----LIDKMLEKIGTPEAL--DLR 296
E A ++ L G D R AS +R + I L G
Sbjct: 48 PEAAQAAVERLAGEGWQDDVRFA--ASVVRNRASSGYGPLHIRAELGTHGLDSDAVSAAM 105
Query: 297 GKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLL 334
A L +++F L ++ K LL
Sbjct: 106 ATFEGDWTENALDLIRRRFGEDGPVDLAQR-RKAADLL 142
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose
3-epimeras tagatose 3-epimerase, isomerase; 2.20A
{Thermotoga maritima}
Length = 290
Score = 28.6 bits (64), Expect = 3.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 174 DGYVSVEVSPRLADDTQGTVEAAKWLHKVVNR 205
+ YVSVE P + A K L +++ +
Sbjct: 257 NRYVSVECLPLPGGMEEAAEIAFKTLKELIIK 288
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 29.0 bits (66), Expect = 4.0
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 363 MPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGID 401
+PD+ F +H +A I + L +LG+D
Sbjct: 590 IPDE----FQEHATAESVHARAGIDAPAIRTVLAELGVD 624
>3lmz_A Putative sugar isomerase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides
distasonis}
Length = 257
Score = 28.2 bits (63), Expect = 4.2
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 153 IKDIQDACKL------------FESIYD--ETNGGDGYVSVEVSPRLADDTQGTVEAAKW 198
IKD+ D+ K F ++ G S+E + D G E+ +
Sbjct: 190 IKDVTDSSKAGVGIEIGRGKIDFPALIRMMREVNYTGMCSLEYEKDMKDPFLGIAESIGY 249
Query: 199 LHKVVNR 205
V +
Sbjct: 250 FKAVSDL 256
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 28.3 bits (64), Expect = 5.2
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 367 ALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDW 402
A + A I +++ + AL LG
Sbjct: 237 LEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRV 272
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 28.3 bits (64), Expect = 6.3
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 174 DGYVSVEVSPRLADDTQGTVEAAKWL--HKVVNRPNVYIKIPA 214
DG + ++V+ +D + E++ + K + I
Sbjct: 136 DGRLRLKVTNTGSDWIEAVAESSGVITGGKAIVVEGKDYDIST 178
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 28.0 bits (63), Expect = 8.0
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 174 DGYVSVEVSPRLADDTQGTVEAAKWL--HKVVNRPNVYIKIPA 214
DG +S +V D V + + K +N P + +P
Sbjct: 178 DGSLSTQVLEIGDDFIVCKVLNSVTIGERKNMNLPGCKVHLPI 220
>3bqy_A Putative TETR family transcriptional regulator; structural
genomics, strept coelicolor, PSI-2, protein structure
initiative; 1.95A {Streptomyces coelicolor A3}
Length = 209
Score = 27.4 bits (61), Expect = 8.5
Identities = 27/180 (15%), Positives = 46/180 (25%), Gaps = 62/180 (34%)
Query: 244 EEVIDAYLDGLEASGLSDLS--RV-----TSVASFF--VSRVDTLIDKMLEKI------G 288
+ LD L SGL L+ R+ + + + L+ M E +
Sbjct: 5 ARTVQTALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAEHMVDGVADA 64
Query: 289 TPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDT 348
D A+ A A AL+ A+ D
Sbjct: 65 AGATGDGDWSERTARLARAL-----------RAALL-------------------AHRDG 94
Query: 349 LYV---APLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYV 405
V GP+T+ D + + G +A ++ N+
Sbjct: 95 ARVFAGTHATGPNTLRFA-DGLVGVLREAG-------FGDGDAARALYSV------ANFT 140
>2hxo_A Putative TETR-family transcriptional regulator; TETR
transcriptional regulator, structural genomics, PSI-2,
structure initiative; 2.40A {Streptomyces coelicolor}
Length = 237
Score = 27.5 bits (61), Expect = 9.0
Identities = 23/178 (12%), Positives = 48/178 (26%), Gaps = 55/178 (30%)
Query: 244 EEVIDAYLDGLEASGLSDLS--RV-----TSVASFF--VSRVDTLIDKMLEKI------G 288
E ++ A ++ L+ G L+ + T + + ++ L+ + +
Sbjct: 19 ERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAATDAVVTAAVTA 78
Query: 289 TPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDT 348
P + AV AL WDA A+P
Sbjct: 79 GPTGAADSPQDAVRAVALGL-----------WDATE-------------------AHPW- 107
Query: 349 LYVAPLIGPDTVSTMPDQALQAFVDHG-AVSRTIDLNVSEAEGIYSALEKLGIDWNYV 405
+A + T + + + + + SAL +Y+
Sbjct: 108 --LATQLATQLSRTPWGTVAPRIFESLGRQVQAMGVPEAHWFTASSAL------MHYI 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.364
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,400,085
Number of extensions: 391653
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 43
Length of query: 440
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 344
Effective length of database: 4,021,377
Effective search space: 1383353688
Effective search space used: 1383353688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.9 bits)