RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 036665
(440 letters)
>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 319
Score = 151 bits (381), Expect = 8e-43
Identities = 68/338 (20%), Positives = 122/338 (36%), Gaps = 61/338 (18%)
Query: 109 GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168
+ T+NP++ A AY + E + GK + E + I LF +
Sbjct: 26 KPQDATTNPSLILAAAQMP-AYQELVEEAIAYGKKLGGPQEEQIKNAIDKLFVLF--GAE 82
Query: 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHK-----VVNRPNVYIKIPATAPCVPSIK 223
G VS EV RL+ D V A+ L + V + + IK+ +T + + K
Sbjct: 83 ILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYKEAGVGKDRILIKLSSTWEGIQAGK 142
Query: 224 EVISQ-GISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDK 282
E+ Q GI N+TL+FS A+ +A + + S FV R+
Sbjct: 143 ELEEQHGIHCNMTLLFSFAQAVACAEAGVTLI---------------SPFVGRILDWHVA 187
Query: 283 MLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKN 342
+K ++ + +G V Y Y+K T V
Sbjct: 188 NTDK----KSYEPQGDPGVKSVTKIYNYYKK--------------------FGYKTIVMG 223
Query: 343 PAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGID- 401
++ +T + L G D ++ P + D+ ++ + + ++ S EK+ +D
Sbjct: 224 ASFRNTGEIKALAGCDFLTISPKLLGELLKDNSKLAPALSVKAAQT----SDSEKIHLDE 279
Query: 402 ----W----NYVGTQLELEGVDSFKKSFDSLLDTLQEK 431
W + + + +G+ F L L E+
Sbjct: 280 KAFRWLHNEDQMAVEKLSDGIRKFAADAIKLERMLTER 317
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}
Length = 316
Score = 127 bits (319), Expect = 6e-34
Identities = 58/332 (17%), Positives = 112/332 (33%), Gaps = 52/332 (15%)
Query: 109 GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYD 168
+ T+NP++ A Y + V K + ++ D D +
Sbjct: 27 QPQDATTNPSLILNAAQIP-EYRKLIDDAVAWAKQQSNDRAQQIV-DATDKL-AVNIGLE 83
Query: 169 ETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHK-----VVNRPNVYIKIPATAPCVPSIK 223
G +S EV RL+ DT+ ++ AK L K ++ + IK+ +T + + +
Sbjct: 84 ILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAE 143
Query: 224 EVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKM 283
++ +GI+ N+TL+FS A+ +A + S FV R+
Sbjct: 144 QLEKEGINCNLTLLFSFAQARACAEAG---------------VFLISPFVGRILDWYKAN 188
Query: 284 LEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNP 343
+K A D G +V++ Y+ + + T V
Sbjct: 189 TDKKEYAPAED-PGVVSVSEIYQYYKEHGYE-----------------------TVVMGA 224
Query: 344 AYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWN 403
++ + + L G D ++ P + GA+ R + E W
Sbjct: 225 SFRNIGEILELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARITES-EFLWQ 283
Query: 404 Y----VGTQLELEGVDSFKKSFDSLLDTLQEK 431
+ + EG+ F + L + +
Sbjct: 284 HNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDL 315
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 76.7 bits (188), Expect = 9e-17
Identities = 52/265 (19%), Positives = 90/265 (33%), Gaps = 82/265 (30%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
+ GVT+NP + KA EA E ++ C+
Sbjct: 22 LSGVTTNPTLVAKAF----------------AAKGEALTEEAFAAHLRAICETV------ 59
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
G VS EV+ + + V + L + PN+ +K+P T + + K + ++G
Sbjct: 60 ----GGPVSAEVTA---LEAEAMVAEGRRLAAI--HPNIVVKLPTTEEGLKACKRLSAEG 110
Query: 230 ISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGT 289
I VN+TLIFS + A + S F+ RVD + E
Sbjct: 111 IKVNMTLIFSANQALLAARAGASYV---------------SPFLGRVDDISWDGGE---- 151
Query: 290 PEALDLRGKAAVAQAALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTL 349
L ++ + +++ +++ AS +P +
Sbjct: 152 ----------------LLREIVE----------MIQVQDLPVKVIAASI-----RHPRHV 180
Query: 350 YVAPLIGPDTVSTMPDQALQAFVDH 374
A L+G D TMP + + H
Sbjct: 181 TEAALLGADIA-TMPHAVFKQLLKH 204
>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Escherichia coli [TaxId: 562]}
Length = 220
Score = 39.8 bits (92), Expect = 3e-04
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 38/131 (29%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
+ GVT+NP+I K ++ + E
Sbjct: 22 LAGVTTNPSIIAAG-----------------KKPLDVVLPQ----------------LHE 48
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
GG G + +V A +G V A L ++ +K+P TA + +IK + ++G
Sbjct: 49 AMGGQGRLFAQVM---ATTAEGMVNDALKLRS--IIADIVVKVPVTAEGLAAIKMLKAEG 103
Query: 230 ISVNVTLIFSL 240
I T ++
Sbjct: 104 IPTLGTAVYGA 114
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 36.2 bits (83), Expect = 0.004
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 40/132 (30%)
Query: 110 VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
V GVT+NP + K G + + E+
Sbjct: 24 VDGVTTNPTLISKE-----------------GAEFKQRVKEICDLV-------------- 52
Query: 170 TNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQG 229
G VS EV D +G V A+ L + V IKIP T + ++K + ++G
Sbjct: 53 ----KGPVSAEVVSL---DYEGMVREARELAQ--ISEYVVIKIPMTPDGIKAVKTLSAEG 103
Query: 230 ISVNVTLIFSLA 241
I NVTL+FS A
Sbjct: 104 IKTNVTLVFSPA 115
>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit,
IlvH {Nitrosomonas europaea [TaxId: 915]}
Length = 86
Score = 28.5 bits (64), Expect = 0.44
Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 203 VNRPNVYIKIPATAPCVPSIKEVIS--QGISVNVT---LIFSLARYEEVIDAYLDGLEAS 257
V R + +K+ A +K + +G ++VT L +D +L ++ +
Sbjct: 5 VERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCN 64
Query: 258 GLSDLSRVTSVA 269
+ +++R
Sbjct: 65 LILEIARTGVSG 76
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop
(Aequipecten irradians) [TaxId: 31199]}
Length = 152
Score = 28.9 bits (63), Expect = 0.84
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 153 IKDIQDACKLFESIYDETNGGDGYVSVE 180
I D++D +LF D +G DG V
Sbjct: 6 IDDLKDVFELF----DFWDGRDGAVDAF 29
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 28.5 bits (63), Expect = 1.4
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 121 QKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDE 169
+K ++ + +Q + IE E + I++ + E + +E
Sbjct: 9 EKLLARPDLTPEQMKNYGMEYAKIEE--IENITNRIKETQEFIELLREE 55
>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium
sterolicum [TaxId: 1702]}
Length = 340
Score = 26.8 bits (59), Expect = 6.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 90 PWYDNLCRPVTDLLPLIASGVRGVT 114
+ DNL P+TD++ I +G G+
Sbjct: 92 IFSDNLPEPITDMIGAINAGNPGIA 116
>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit,
IlvH {Thermotoga maritima [TaxId: 2336]}
Length = 83
Score = 24.6 bits (54), Expect = 7.8
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 200 HKVVNRPNVYIKIPATAPCVPSIKEV-ISQGISVNVT---LIFSLARYEEVIDAYLDGLE 255
V R IK+ + V I +G ++V+ I + ++A+++ L
Sbjct: 4 ENRVEREMALIKVRFDEDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLP 63
Query: 256 ASGLSDLSRVTSVA 269
+ +++R VA
Sbjct: 64 QKQVEEIARTGIVA 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.364
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,509,961
Number of extensions: 68592
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 12
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.6 bits)