BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036666
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 85/182 (46%), Gaps = 25/182 (13%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL 213
N +G IPP L+N + L L L N L+G+IPS LGSL L+ ++ N L GEIP +L
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQEL 462
Query: 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLH 273
+ L T L+G IP N NL ++L + + G IP IG L L L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 274 MNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDL 333
N +G+ IPAEL +C +L+ LD + N +G +P +
Sbjct: 523 NNSFSGN------------------------IPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 334 GK 335
K
Sbjct: 559 FK 560
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 3/200 (1%)
Query: 154 NRLSGSIP-PQLANLTSLQVLCLQDNLLNGSIPSQLGSL-VSLQQFRIGGNPYLTGEIPT 211
N SG +P L + L+VL L N +G +P L +L SL + N + +P
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 212 QLGMLTN-LTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNL 270
N L G +G IPPT N L +L L + G+IP +G S+LR+L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 271 YLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELP 330
L +N L G IP E N L+G IP+ LSNC+ L + S N L+GE+P
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 331 GDLGKLVLLEQLHLSDNMLT 350
+G+L L L LS+N +
Sbjct: 508 KWIGRLENLAILKLSNNSFS 527
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 115/289 (39%), Gaps = 47/289 (16%)
Query: 108 ISGIIPPSFGQLTHXXXXXXXXXXXXGPIPEEXXXXXXXXXXXXNTNRLSGSIPPQLANL 167
+SG IP S G L+ G IP+E + N L+G IP L+N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 168 TSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLG---------MLTN 218
T+L + L +N L G IP +G L +L ++ N + +G IP +LG + TN
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTN 548
Query: 219 LT--TFGAAATGLSGVIPPTF---------------------GNLINLQTLALYD----- 250
L T AA SG I F GNL+ Q +
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 251 --------TEVF-GSIPPEIGLCSELRNLYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTL 301
+ V+ G P + L + N L+G IP E N +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 302 SGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350
SG IP E+ + L +LD S+N L G +P + L +L ++ LS+N L+
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 102/244 (41%), Gaps = 5/244 (2%)
Query: 110 GIIPPSFGQLTHXXXXXXXXXXXXGPIPEEXXXXXX-XXXXXXNTNRLSGSIPPQLANLT 168
G +PP FG + G +P + + N SG +P L NL+
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 169 -SLQVLCLQDNLLNGSIPSQLGS--LVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAA 225
SL L L N +G I L +LQ+ + N + TG+IP L + L + +
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLS 426
Query: 226 ATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSEX 285
LSG IP + G+L L+ L L+ + G IP E+ L L L N LTG IPS
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 286 XXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLS 345
N L+G IP + L +L S N SG +P +LG L L L+
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 346 DNML 349
N+
Sbjct: 547 TNLF 550
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIP-SQLGSLVSLQQFRIGGNPYLTGEIPTQ 212
N G++PP + + L+ L L N +G +P L + L+ + N + +GE+P
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-SGELPES 362
Query: 213 LGMLT-NLTTFGAAATGLSG-VIPPTFGNLIN-LQTLALYDTEVFGSIPPEIGLCSELRN 269
L L+ +L T ++ SG ++P N N LQ L L + G IPP + CSEL +
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 270 LYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGEL 329
L+L N L+G+IPS W N L G IP EL L L NDL+GE+
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 330 PGDLGKLVLLEQLHLSDNMLT 350
P L L + LS+N LT
Sbjct: 483 PSGLSNCTNLNWISLSNNRLT 503
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 95/245 (38%), Gaps = 21/245 (8%)
Query: 107 NISGIIPPSFGQLTHXXXXXXXXXXXXGPIPEEXXXXXXXXXXXXNTNRLSGSIPPQLAN 166
+++G IP T+ G IP+ + N SG+IP +L +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 167 LTSLQVLCLQDNLLNGSIPSQL--------GSLVSLQQFRIGGNPYLTGEI--------- 209
SL L L NL NG+IP+ + + ++ +++ N + E
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 210 ----PTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCS 265
QL L+ + G PTF N ++ L + + G IP EIG
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 266 ELRNLYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDL 325
L L L N ++GSIP E N L G IP +S + L +D S N+L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 326 SGELP 330
SG +P
Sbjct: 717 SGPIP 721
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL 213
N++SG + ++ +L+ L + N + IP LG +LQ I GN L+G+ +
Sbjct: 188 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAI 243
Query: 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEI-GLCSELRNLYL 272
T L ++ G IPP L +LQ L+L + + G IP + G C L L L
Sbjct: 244 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 273 HMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGD 332
GN G +P +CS L L S+N+ SGELP D
Sbjct: 302 S------------------------GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 333 -LGKLVLLEQLHLSDNMLT 350
L K+ L+ L LS N +
Sbjct: 338 TLLKMRGLKVLDLSFNEFS 356
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 264 CSELRNLYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASAN 323
C EL++L + NK++G + + N S IP L +CSAL LD S N
Sbjct: 177 CGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233
Query: 324 DLSGELPGDLGKLVLLEQLHLSDNMLT 350
LSG+ + L+ L++S N
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFV 260
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 85/182 (46%), Gaps = 25/182 (13%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL 213
N +G IPP L+N + L L L N L+G+IPS LGSL L+ ++ N L GEIP +L
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQEL 459
Query: 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLH 273
+ L T L+G IP N NL ++L + + G IP IG L L L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 274 MNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDL 333
N +G+ IPAEL +C +L+ LD + N +G +P +
Sbjct: 520 NNSFSGN------------------------IPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 334 GK 335
K
Sbjct: 556 FK 557
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 3/200 (1%)
Query: 154 NRLSGSIP-PQLANLTSLQVLCLQDNLLNGSIPSQLGSL-VSLQQFRIGGNPYLTGEIPT 211
N SG +P L + L+VL L N +G +P L +L SL + N + +P
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 212 QLGMLTN-LTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNL 270
N L G +G IPPT N L +L L + G+IP +G S+LR+L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 271 YLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELP 330
L +N L G IP E N L+G IP+ LSNC+ L + S N L+GE+P
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 331 GDLGKLVLLEQLHLSDNMLT 350
+G+L L L LS+N +
Sbjct: 505 KWIGRLENLAILKLSNNSFS 524
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 115/289 (39%), Gaps = 47/289 (16%)
Query: 108 ISGIIPPSFGQLTHXXXXXXXXXXXXGPIPEEXXXXXXXXXXXXNTNRLSGSIPPQLANL 167
+SG IP S G L+ G IP+E + N L+G IP L+N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 168 TSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLG---------MLTN 218
T+L + L +N L G IP +G L +L ++ N + +G IP +LG + TN
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTN 545
Query: 219 LT--TFGAAATGLSGVIPPTF---------------------GNLINLQTLALYD----- 250
L T AA SG I F GNL+ Q +
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 605
Query: 251 --------TEVF-GSIPPEIGLCSELRNLYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTL 301
+ V+ G P + L + N L+G IP E N +
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 302 SGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350
SG IP E+ + L +LD S+N L G +P + L +L ++ LS+N L+
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 103/247 (41%), Gaps = 5/247 (2%)
Query: 107 NISGIIPPSFGQLTHXXXXXXXXXXXXGPIPEEXXXXXX-XXXXXXNTNRLSGSIPPQLA 165
+ G +PP FG + G +P + + N SG +P L
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 166 NLT-SLQVLCLQDNLLNGSIPSQLGS--LVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTF 222
NL+ SL L L N +G I L +LQ+ + N + TG+IP L + L +
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSL 420
Query: 223 GAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIP 282
+ LSG IP + G+L L+ L L+ + G IP E+ L L L N LTG IP
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Query: 283 SEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQL 342
S N L+G IP + L +L S N SG +P +LG L L
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 540
Query: 343 HLSDNML 349
L+ N+
Sbjct: 541 DLNTNLF 547
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIP-SQLGSLVSLQQFRIGGNPYLTGEIPTQ 212
N G++PP + + L+ L L N +G +P L + L+ + N + +GE+P
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-SGELPES 359
Query: 213 LGMLT-NLTTFGAAATGLSG-VIPPTFGNLIN-LQTLALYDTEVFGSIPPEIGLCSELRN 269
L L+ +L T ++ SG ++P N N LQ L L + G IPP + CSEL +
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 270 LYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGEL 329
L+L N L+G+IPS W N L G IP EL L L NDL+GE+
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 330 PGDLGKLVLLEQLHLSDNMLT 350
P L L + LS+N LT
Sbjct: 480 PSGLSNCTNLNWISLSNNRLT 500
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 95/245 (38%), Gaps = 21/245 (8%)
Query: 107 NISGIIPPSFGQLTHXXXXXXXXXXXXGPIPEEXXXXXXXXXXXXNTNRLSGSIPPQLAN 166
+++G IP T+ G IP+ + N SG+IP +L +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 167 LTSLQVLCLQDNLLNGSIPSQL--------GSLVSLQQFRIGGNPYLTGEI--------- 209
SL L L NL NG+IP+ + + ++ +++ N + E
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 210 ----PTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCS 265
QL L+ + G PTF N ++ L + + G IP EIG
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 266 ELRNLYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDL 325
L L L N ++GSIP E N L G IP +S + L +D S N+L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 326 SGELP 330
SG +P
Sbjct: 714 SGPIP 718
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL 213
N++SG + ++ +L+ L + N + IP LG +LQ I GN L+G+ +
Sbjct: 185 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAI 240
Query: 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEI-GLCSELRNLYL 272
T L ++ G IPP L +LQ L+L + + G IP + G C L L L
Sbjct: 241 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 298
Query: 273 HMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGD 332
GN G +P +CS L L S+N+ SGELP D
Sbjct: 299 S------------------------GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 333 -LGKLVLLEQLHLSDNMLT 350
L K+ L+ L LS N +
Sbjct: 335 TLLKMRGLKVLDLSFNEFS 353
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 264 CSELRNLYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASAN 323
C EL++L + NK++G + + N S IP L +CSAL LD S N
Sbjct: 174 CGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 230
Query: 324 DLSGELPGDLGKLVLLEQLHLSDNMLT 350
LSG+ + L+ L++S N
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFV 257
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 2/167 (1%)
Query: 184 IPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINL 243
IPS L +L L IGG L G IP + LT L T +SG IP + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 244 QTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIP-SEXXXXXXXXXXXXWGNTLS 302
TL + G++PP I L + N+++G+IP S N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 303 GPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349
G IP +N + L +D S N L G+ G +++HL+ N L
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 2/200 (1%)
Query: 107 NISGIIPPSFGQLTHXXXXXXXXXXXXGPIPEEXXXXXXXXXXXXNTNRLSGSIPPQLAN 166
N+ G IPP+ +LT G IP+ + N LSG++PP +++
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 167 LTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAA 226
L +L + N ++G+IP GS L LTG+IP L NL +
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206
Query: 227 TGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSEXX 286
L G FG+ N Q + L + + ++GL L L L N++ G++P
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 287 XXXXXXXXXXWGNTLSGPIP 306
N L G IP
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 4/198 (2%)
Query: 134 GPIPEEXXXXXXXXXXXXNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVS 193
GPIP +SG+IP L+ + +L L N L+G++P + SL +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 194 LQQFRIGGNPYLTGEIPTQLGMLTNL-TTFGAAATGLSGVIPPTFGNLINLQTLALYDTE 252
L GN ++G IP G + L T+ + L+G IPPTF NL NL + L
Sbjct: 151 LVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208
Query: 253 VFGSIPPEIGLCSELRNLYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNC 312
+ G G + ++L N L + + N + G +P L+
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 313 SALVVLDASANDLSGELP 330
L L+ S N+L GE+P
Sbjct: 268 KFLHSLNVSFNNLCGEIP 285
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 18/185 (9%)
Query: 106 TNISGIIPPSFGQLTHXXXXXXXXXXXXGPIPEEXXXXXXXXXXXXNTNRLSGSIPPQLA 165
TN+SG IP Q+ G +P + NR+SG+IP
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 166 NLTSL-QVLCLQDNLLNGSIPSQLGSL----VSLQQFRIGGNP---YLTGEIPTQLGMLT 217
+ + L + + N L G IP +L V L + + G+ + + + ++ +
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 218 NLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKL 277
N F GLS NL L L + ++G++P + L +L + N L
Sbjct: 231 NSLAFDLGKVGLSK----------NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 278 TGSIP 282
G IP
Sbjct: 281 CGEIP 285
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 55/137 (40%), Gaps = 36/137 (26%)
Query: 211 TQLGML--TNLTTFGAAATGLSGV-------IPPTFGNLINLQTLALYD-TEVFGSIPPE 260
T LG+L T+ T+ LSG+ IP + NL L L + + G IPP
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 261 IGLCSELRNLYL-HMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLD 319
I ++L LY+ H N +SG IP LS LV LD
Sbjct: 97 IAKLTQLHYLYITHTN-------------------------VSGAIPDFLSQIKTLVTLD 131
Query: 320 ASANDLSGELPGDLGKL 336
S N LSG LP + L
Sbjct: 132 FSYNALSGTLPPSISSL 148
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 298 GNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350
GN+L+ +PAE+ N S L VLD S N L+ LP +LG L+ + DNM+T
Sbjct: 256 GNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 27/90 (30%)
Query: 159 SIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTN 218
+P ++ NL++L+VL L N L S+P++LGS L+ F N M+T
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN------------MVTT 307
Query: 219 LTTFGAAATGLSGVIPPTFGNLINLQTLAL 248
L P FGNL NLQ L +
Sbjct: 308 L--------------PWEFGNLCNLQFLGV 323
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 190 SLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALY 249
L +LQ F I N + + LT L G + T L P NL NL+ L L
Sbjct: 230 DLSNLQIFNISANIF-------KYDFLTRLYLNGNSLTEL----PAEIKNLSNLRVLDLS 278
Query: 250 DTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSE 284
+ S+P E+G C +L+ Y N +T ++P E
Sbjct: 279 HNRL-TSLPAELGSCFQLKYFYFFDNMVT-TLPWE 311
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNP 203
NRL+ S+P +L + L+ DN++ ++P + G+L +LQ + GNP
Sbjct: 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 68/194 (35%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL 213
NR+S +L +L L N+L + L L+Q + N L P
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLH 273
L L T GL + P F L LQ L L D + L +L+LH
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 274 MNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDL 333
N+++ N ++ P + L+ L AN+LS L
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221
Query: 334 GKLVLLEQLHLSDN 347
L L+ L L+DN
Sbjct: 222 APLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 68/194 (35%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL 213
NR+S +L +L L N+L + L L+Q + N L P
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLH 273
L L T GL + P F L LQ L L D + L +L+LH
Sbjct: 101 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 160
Query: 274 MNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDL 333
N+++ N ++ P + L+ L AN+LS L
Sbjct: 161 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 220
Query: 334 GKLVLLEQLHLSDN 347
L L+ L L+DN
Sbjct: 221 APLRALQYLRLNDN 234
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 73/195 (37%), Gaps = 2/195 (1%)
Query: 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL 213
NR+S + +L +L L N L G + L L+Q + N L PT
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLH 273
L +L T GL + P F L LQ L L D + L +L+LH
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLH 160
Query: 274 MNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGD- 332
N++ N ++ P + L+ L AN+LS LP +
Sbjct: 161 GNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEV 219
Query: 333 LGKLVLLEQLHLSDN 347
L L L+ L L+DN
Sbjct: 220 LVPLRSLQYLRLNDN 234
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 298 GNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDN 347
GN +S A +C L +L +N L+G L LLEQL LSDN
Sbjct: 40 GNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 168 TSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPT-QLGMLTNLTTFGAAA 226
T+ Q+L L DN + P SL++L++ +G N G +P LT LT
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGT 97
Query: 227 TGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIP 282
L+ + F L++L+ L + ++ +P I + L +L L N+L SIP
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP 151
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 191 LVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYD 250
L SL+ ++ GN + +P L NLT + L + P F +L +LQ L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 251 TEVFGSIPPEI-GLCSELRNLYLHMNKLTGSIP 282
++ S+P I + L+ ++LH N S P
Sbjct: 504 NQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 164 LANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFG 223
+L SL+ L L DN L+ S G L SL+ + GNPY T + + LTNL T
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 224 AA-ATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNK 276
S + F L +L L + + + ++ +L LH+++
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 24/94 (25%)
Query: 164 LANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFG 223
+L SL+ L L DN L+ S G L SL+ + GNPY T
Sbjct: 96 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT----------------- 138
Query: 224 AAATGLSGVIPPTFGNLINLQTLALYDTEVFGSI 257
G++ + P NL NLQTL + + E F I
Sbjct: 139 ---LGVTSLFP----NLTNLQTLRIGNVETFSEI 165
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Query: 152 NTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPT 211
N N+L L +L+ L + DN L LV+L + R+ N L P
Sbjct: 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPR 127
Query: 212 QLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLY 271
LT LT L + F L +L+ L LY+ ++ +EL+ L
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
Query: 272 LHMNKLT 278
L N+L
Sbjct: 188 LDNNQLK 194
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 191 LVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYD 250
L SL+ ++ GN + +P L NLT + L + P F +L +LQ L +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 251 TEVFG 255
F
Sbjct: 209 NNFFS 213
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 191 LVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYD 250
L SL+ ++ GN + +P L NLT + L + P F +L +LQ L +
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 251 TEVFG 255
F
Sbjct: 528 NNFFS 532
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 30/140 (21%)
Query: 213 LGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRN--- 269
L LTNLT L + F L NL+ L L + ++ S+P G+ +L N
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPD--GVFDKLTNLTY 137
Query: 270 LYLHMNKLTGSIPSEXXXXXXXXXXXXWGNTLSGPIPAELSNCSALVVLDASANDLSGEL 329
LYL+ N+L +L + +L+N L LD N L
Sbjct: 138 LYLYHNQL---------------------QSLPKGVFDKLTN---LTRLDLDNNQLQSLP 173
Query: 330 PGDLGKLVLLEQLHLSDNML 349
G KL L+QL L+DN L
Sbjct: 174 EGVFDKLTQLKQLSLNDNQL 193
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 191 LVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYD 250
L SL+ ++ GN + +P L NLT + L + P F +L +LQ L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 251 TEVFG 255
F
Sbjct: 504 NNFFS 508
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,342,626
Number of Sequences: 62578
Number of extensions: 235022
Number of successful extensions: 463
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 61
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)