Query 036666
Match_columns 350
No_of_seqs 278 out of 3379
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:19:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.3E-42 2E-46 343.9 28.2 317 23-348 26-343 (968)
2 PLN00113 leucine-rich repeat r 100.0 3E-34 6.5E-39 289.5 19.9 223 87-310 155-377 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-31 2.4E-36 237.6 1.9 278 71-349 125-428 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.2E-29 2.6E-34 224.8 6.7 276 72-350 79-378 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.1E-28 2.3E-33 220.7 -6.0 271 71-348 78-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.2E-27 4.7E-32 212.3 -4.5 270 72-350 33-304 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.5E-26 3.2E-31 196.8 -6.1 267 73-350 185-541 (565)
8 PLN03210 Resistant to P. syrin 99.9 2.5E-21 5.3E-26 196.9 23.5 265 73-348 591-904 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 3.8E-26 8.2E-31 194.4 -11.0 263 72-349 46-309 (565)
10 KOG4237 Extracellular matrix p 99.9 8E-24 1.7E-28 179.8 -3.8 276 72-349 68-358 (498)
11 PLN03210 Resistant to P. syrin 99.8 5.9E-20 1.3E-24 186.9 21.0 250 88-348 580-880 (1153)
12 KOG4237 Extracellular matrix p 99.8 1.9E-23 4.1E-28 177.6 -5.0 262 86-350 59-335 (498)
13 PRK15387 E3 ubiquitin-protein 99.8 5.5E-20 1.2E-24 175.4 17.7 238 74-350 204-458 (788)
14 PRK15370 E3 ubiquitin-protein 99.8 3.6E-20 7.9E-25 177.5 14.2 246 72-350 179-428 (754)
15 cd00116 LRR_RI Leucine-rich re 99.8 1.5E-22 3.4E-27 179.5 -3.4 273 76-349 3-319 (319)
16 KOG0618 Serine/threonine phosp 99.8 2.7E-22 5.8E-27 186.9 -3.3 244 97-348 242-487 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.8 1.9E-21 4.1E-26 172.6 -2.8 250 100-350 2-291 (319)
18 KOG0618 Serine/threonine phosp 99.8 4.2E-21 9E-26 179.0 -4.2 268 70-347 240-510 (1081)
19 PRK15370 E3 ubiquitin-protein 99.8 2.7E-18 5.8E-23 164.7 12.8 224 96-350 178-401 (754)
20 PRK15387 E3 ubiquitin-protein 99.8 5.7E-18 1.2E-22 161.8 14.5 227 71-333 222-465 (788)
21 KOG0617 Ras suppressor protein 99.7 2.1E-19 4.6E-24 136.6 -3.9 156 92-253 29-185 (264)
22 KOG0617 Ras suppressor protein 99.7 3.3E-19 7.2E-24 135.5 -4.8 152 72-230 34-186 (264)
23 PLN03150 hypothetical protein; 99.6 1.3E-14 2.9E-19 138.6 13.1 149 22-180 368-527 (623)
24 KOG3207 Beta-tubulin folding c 99.3 1.1E-13 2.4E-18 120.0 -1.1 211 117-327 118-340 (505)
25 KOG3207 Beta-tubulin folding c 99.3 1.4E-13 3.1E-18 119.4 -1.5 210 141-350 118-339 (505)
26 COG4886 Leucine-rich repeat (L 99.3 5.5E-12 1.2E-16 115.2 7.5 175 119-302 115-290 (394)
27 KOG1909 Ran GTPase-activating 99.3 2E-13 4.4E-18 115.3 -2.9 235 90-325 24-310 (382)
28 KOG1909 Ran GTPase-activating 99.3 2E-13 4.3E-18 115.3 -3.0 233 70-302 29-311 (382)
29 COG4886 Leucine-rich repeat (L 99.2 2E-11 4.4E-16 111.5 8.9 201 123-333 96-297 (394)
30 KOG0532 Leucine-rich repeat (L 99.2 2.9E-13 6.4E-18 121.1 -4.1 180 144-334 75-254 (722)
31 KOG1259 Nischarin, modulator o 99.2 2.8E-12 6E-17 106.6 1.1 134 211-350 278-412 (490)
32 PLN03150 hypothetical protein; 99.2 3E-11 6.5E-16 115.8 8.1 106 243-348 420-526 (623)
33 KOG0532 Leucine-rich repeat (L 99.2 4.1E-13 8.8E-18 120.2 -4.5 191 123-324 78-271 (722)
34 PF14580 LRR_9: Leucine-rich r 99.2 3.1E-11 6.7E-16 95.5 4.6 125 215-344 17-147 (175)
35 KOG4658 Apoptotic ATPase [Sign 99.1 1.7E-11 3.6E-16 120.2 3.0 149 72-224 524-675 (889)
36 PF14580 LRR_9: Leucine-rich r 99.1 3.5E-11 7.6E-16 95.2 3.5 82 95-181 18-101 (175)
37 PF13855 LRR_8: Leucine rich r 99.1 5.5E-11 1.2E-15 77.6 3.0 61 289-349 1-61 (61)
38 KOG4658 Apoptotic ATPase [Sign 99.1 4.4E-11 9.4E-16 117.3 2.4 178 72-254 546-730 (889)
39 PF13855 LRR_8: Leucine rich r 99.0 4.3E-10 9.3E-15 73.3 3.3 61 265-325 1-61 (61)
40 KOG1259 Nischarin, modulator o 98.9 5.3E-11 1.2E-15 99.0 -2.3 129 120-255 284-413 (490)
41 KOG0531 Protein phosphatase 1, 98.9 2E-10 4.4E-15 105.3 -0.9 195 95-302 71-268 (414)
42 KOG2982 Uncharacterized conser 98.8 3.8E-10 8.3E-15 93.8 -0.6 202 143-344 70-286 (418)
43 KOG0531 Protein phosphatase 1, 98.8 3.5E-10 7.6E-15 103.7 -2.8 197 117-326 69-268 (414)
44 KOG2120 SCF ubiquitin ligase, 98.6 2.9E-10 6.2E-15 94.6 -8.6 177 145-323 186-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.5 6.3E-10 1.4E-14 102.9 -9.8 126 218-349 165-291 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.5 2.8E-10 6E-15 94.7 -11.2 221 71-293 159-391 (419)
47 KOG2982 Uncharacterized conser 98.4 2.3E-08 4.9E-13 83.5 -1.3 85 95-179 70-157 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.4 3.2E-08 6.9E-13 81.6 -2.0 136 191-326 156-316 (388)
49 COG5238 RNA1 Ran GTPase-activa 98.3 2.6E-08 5.6E-13 82.1 -3.1 246 93-350 27-316 (388)
50 KOG1859 Leucine-rich repeat pr 98.2 7.8E-08 1.7E-12 89.4 -2.5 156 185-350 102-267 (1096)
51 PF08263 LRRNT_2: Leucine rich 98.2 1.4E-06 3.1E-11 51.9 3.8 41 25-68 2-43 (43)
52 PF12799 LRR_4: Leucine Rich r 98.2 1.2E-06 2.5E-11 52.4 2.8 37 289-326 1-37 (44)
53 KOG4579 Leucine-rich repeat (L 98.2 5.7E-08 1.2E-12 71.9 -4.1 106 219-326 29-136 (177)
54 KOG4341 F-box protein containi 98.1 2E-08 4.4E-13 87.4 -8.2 278 71-348 138-437 (483)
55 KOG4579 Leucine-rich repeat (L 98.1 1.6E-07 3.5E-12 69.5 -3.5 117 212-331 48-164 (177)
56 KOG3665 ZYG-1-like serine/thre 98.1 1.4E-06 3.1E-11 83.9 1.8 152 168-321 122-283 (699)
57 PF12799 LRR_4: Leucine Rich r 98.0 5.6E-06 1.2E-10 49.4 3.1 38 265-303 1-38 (44)
58 KOG1644 U2-associated snRNP A' 98.0 1.5E-05 3.2E-10 63.3 6.1 82 120-203 42-124 (233)
59 PRK15386 type III secretion pr 97.9 4.3E-05 9.3E-10 68.4 8.6 138 140-300 48-188 (426)
60 KOG1644 U2-associated snRNP A' 97.9 2.8E-05 6.2E-10 61.7 5.7 103 242-346 43-149 (233)
61 KOG3665 ZYG-1-like serine/thre 97.9 5.1E-06 1.1E-10 80.2 1.6 135 192-328 122-265 (699)
62 PF13306 LRR_5: Leucine rich r 97.8 6.8E-05 1.5E-09 56.8 6.8 120 214-339 9-128 (129)
63 PRK15386 type III secretion pr 97.8 0.0001 2.2E-09 66.1 7.9 76 189-277 49-124 (426)
64 PF13306 LRR_5: Leucine rich r 97.7 0.00013 2.7E-09 55.3 7.3 121 188-315 8-128 (129)
65 KOG2739 Leucine-rich acidic nu 97.6 2.1E-05 4.7E-10 64.9 1.5 108 88-199 35-150 (260)
66 KOG2739 Leucine-rich acidic nu 97.4 8.2E-05 1.8E-09 61.5 2.4 61 216-278 42-104 (260)
67 KOG1947 Leucine rich repeat pr 97.3 1.9E-05 4E-10 74.2 -2.9 111 119-229 187-307 (482)
68 KOG2123 Uncharacterized conser 96.9 2.9E-05 6.4E-10 64.7 -5.3 80 120-203 19-99 (388)
69 KOG1947 Leucine rich repeat pr 96.8 0.0001 2.3E-09 69.1 -2.9 131 142-272 186-328 (482)
70 KOG2123 Uncharacterized conser 96.8 4.3E-05 9.3E-10 63.7 -5.2 82 217-303 19-102 (388)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0029 6.4E-08 31.3 0.5 19 315-334 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.0092 2E-07 29.5 0.5 12 291-302 2-13 (22)
73 KOG4308 LRR-containing protein 94.2 0.00023 5E-09 66.0 -11.3 182 145-327 88-304 (478)
74 PF13504 LRR_7: Leucine rich r 93.7 0.044 9.5E-07 25.1 1.3 12 338-349 2-13 (17)
75 KOG3864 Uncharacterized conser 93.7 0.0071 1.5E-07 48.4 -2.3 81 243-323 103-186 (221)
76 KOG4308 LRR-containing protein 93.5 0.00034 7.3E-09 64.9 -11.7 203 122-324 89-329 (478)
77 KOG0473 Leucine-rich repeat pr 93.4 0.0013 2.9E-08 53.7 -6.9 83 264-349 41-123 (326)
78 KOG4341 F-box protein containi 92.0 0.038 8.3E-07 49.2 -0.4 160 94-253 266-438 (483)
79 KOG3864 Uncharacterized conser 90.0 0.029 6.2E-07 45.0 -2.8 83 144-226 101-185 (221)
80 PF13516 LRR_6: Leucine Rich r 89.4 0.061 1.3E-06 27.1 -0.9 14 313-326 2-15 (24)
81 smart00370 LRR Leucine-rich re 88.9 0.36 7.7E-06 24.7 1.8 13 290-302 3-15 (26)
82 smart00369 LRR_TYP Leucine-ric 88.9 0.36 7.7E-06 24.7 1.8 13 290-302 3-15 (26)
83 KOG0473 Leucine-rich repeat pr 88.6 0.0072 1.6E-07 49.5 -7.1 81 72-156 43-123 (326)
84 smart00365 LRR_SD22 Leucine-ri 83.4 1.1 2.5E-05 23.0 1.9 12 338-349 3-14 (26)
85 smart00368 LRR_RI Leucine rich 83.0 1.1 2.4E-05 23.4 1.8 13 337-349 2-14 (28)
86 KOG4242 Predicted myosin-I-bin 76.1 20 0.00044 33.2 8.5 107 71-180 165-280 (553)
87 smart00364 LRR_BAC Leucine-ric 75.0 2.1 4.6E-05 22.0 1.3 13 290-302 3-15 (26)
88 KOG3763 mRNA export factor TAP 67.5 3 6.5E-05 39.1 1.5 12 288-299 243-254 (585)
89 smart00367 LRR_CC Leucine-rich 66.2 4.7 0.0001 20.5 1.5 13 336-348 1-13 (26)
90 KOG4242 Predicted myosin-I-bin 60.1 44 0.00096 31.1 7.3 230 96-326 214-481 (553)
91 KOG3763 mRNA export factor TAP 51.7 6.5 0.00014 36.9 0.8 63 94-158 216-284 (585)
92 COG5510 Predicted small secret 47.8 23 0.00049 20.7 2.3 22 1-22 2-23 (44)
93 PF03823 Neurokinin_B: Neuroki 34.6 42 0.00091 20.8 2.1 27 1-27 1-27 (59)
94 PF03032 Brevenin: Brevenin/es 31.7 36 0.00077 20.3 1.5 11 1-11 3-13 (46)
95 PF11106 YjbE: Exopolysacchari 31.5 49 0.0011 22.0 2.2 15 1-15 1-15 (80)
96 PRK10081 entericidin B membran 28.6 68 0.0015 19.3 2.3 20 1-20 2-21 (48)
97 PF02402 Lysis_col: Lysis prot 28.4 24 0.00052 20.6 0.4 13 1-13 1-13 (46)
98 PF12393 Dr_adhesin: Dr family 26.6 89 0.0019 15.1 2.2 11 1-11 1-11 (21)
99 PF10731 Anophelin: Thrombin i 26.6 72 0.0016 20.1 2.2 20 1-20 1-20 (65)
100 PF08139 LPAM_1: Prokaryotic m 26.3 55 0.0012 16.7 1.4 6 2-7 8-13 (25)
101 PF11777 DUF3316: Protein of u 24.3 1.4E+02 0.0029 21.8 3.9 19 1-19 1-19 (114)
102 PRK10053 hypothetical protein; 23.9 73 0.0016 24.0 2.3 19 1-19 1-19 (130)
103 PF02950 Conotoxin: Conotoxin; 22.4 46 0.001 22.0 1.0 15 1-15 1-15 (75)
104 PF05968 Bacillus_PapR: Bacill 21.2 85 0.0018 18.5 1.7 14 1-14 1-14 (48)
105 TIGR00864 PCC polycystin catio 20.2 76 0.0016 36.6 2.5 32 102-133 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.3e-42 Score=343.94 Aligned_cols=317 Identities=37% Similarity=0.575 Sum_probs=203.2
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEE
Q 036666 23 SLSPDGEALLSLISAAGPSAKASSSILSSWNPSNLTPCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLN 102 (350)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 102 (350)
..++|..+++.|++.+. ++.+...+|. ...++|.|.|+.|+..++|+.++++++.+. +.++..+..+++|++|+
T Consensus 26 ~~~~~~~~l~~~~~~~~----~~~~~~~~w~-~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~-~~~~~~~~~l~~L~~L~ 99 (968)
T PLN00113 26 LHAEELELLLSFKSSIN----DPLKYLSNWN-SSADVCLWQGITCNNSSRVVSIDLSGKNIS-GKISSAIFRLPYIQTIN 99 (968)
T ss_pred CCHHHHHHHHHHHHhCC----CCcccCCCCC-CCCCCCcCcceecCCCCcEEEEEecCCCcc-ccCChHHhCCCCCCEEE
Confidence 35689999999999997 6766788997 456899999999987789999999999887 77788888899999999
Q ss_pred CCCCcCCcCCCcCC-CCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCC
Q 036666 103 LSSTNISGIIPPSF-GQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLN 181 (350)
Q Consensus 103 l~~n~i~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 181 (350)
+++|.+.+.+|..+ ..+++|++|++++|.+.+.+|. ..+++|++|++++|.+++.+|..++.+++|++|++++|.+.
T Consensus 100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred CCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 99999887777554 3777778887777777655553 34556666666666665555555666666666666666655
Q ss_pred CCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccc
Q 036666 182 GSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEI 261 (350)
Q Consensus 182 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 261 (350)
+.+|..+.++++|++|++++|. +.+..+..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 5555555566666666666555 444455555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 036666 262 GLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQ 341 (350)
Q Consensus 262 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 341 (350)
..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 55555555555555555444555555555555555555554444444444444444444444444444444444444444
Q ss_pred EeCcCCC
Q 036666 342 LHLSDNM 348 (350)
Q Consensus 342 L~l~~n~ 348 (350)
|++++|+
T Consensus 337 L~L~~n~ 343 (968)
T PLN00113 337 LQLWSNK 343 (968)
T ss_pred EECcCCC
Confidence 4444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3e-34 Score=289.52 Aligned_cols=223 Identities=41% Similarity=0.612 Sum_probs=122.2
Q ss_pred CCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCC
Q 036666 87 ALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLAN 166 (350)
Q Consensus 87 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 166 (350)
.+|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+++
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceE
Q 036666 167 LTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTL 246 (350)
Q Consensus 167 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 246 (350)
+++|++|++++|.+.+.+|..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK-LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe-eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 5555555555555555555555555555555555554 444445555555555555555555555555555555555555
Q ss_pred eecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCc
Q 036666 247 ALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELS 310 (350)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 310 (350)
++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+.
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 5555555555555555555555555555555555555555555555555555555444444333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-31 Score=237.57 Aligned_cols=278 Identities=24% Similarity=0.252 Sum_probs=175.7
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
++++.+++..|.+. ..-...+..++.|+.|||+.|.|+.....+|..-.++++|+|+.|+|+....+.|..+.+|..|.
T Consensus 125 ghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 57888888888875 33344667777788888888877766556666667788888888887766666777777777777
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCC-----------------------Ccc
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPY-----------------------LTG 207 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~-----------------------~~~ 207 (350)
|++|.++...+..|+++++|+.|++.+|++...---.|..+++|+.|.+..|.+ +..
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 777777766666677777777777777766432223444555555555555441 222
Q ss_pred cCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhC
Q 036666 208 EIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGK 287 (350)
Q Consensus 208 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 287 (350)
.-..++.+++.|+.|++++|.|...-++.++.+++|+.|+++.|+++...+..|..+..|++|.++.|.++..-...|.+
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 33334444555555555555555444455555555555555555555444455555555555555555555433445556
Q ss_pred CCCCCEEeccCccCcccC---CccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 288 LQKLTSLLLWGNTLSGPI---PAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 288 ~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
+++|+.|||++|.+...+ ...|.++++|+.|++.+|++....-.+|.++++|++||+.+|.|
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 667777777777665432 23456677777777777777755556777788888888877765
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-29 Score=224.76 Aligned_cols=276 Identities=24% Similarity=0.210 Sum_probs=169.8
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
....+++++|.+. ..-+..|-++++|+++++.+|.++ .+|.-.+...+|+.|+|.+|.|+.+....+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 5667899888875 433445677788888888877776 55543334445666666666666555555555566666666
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccc----
Q 036666 152 NTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAAT---- 227 (350)
Q Consensus 152 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~---- 227 (350)
+.|.++...-..|..-.++++|++++|+++..-.+.|..+.+|..|.++.|+ ++......|+.+++|+.|++..|
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceee
Confidence 6665553333334444555555555555554444445555555555555554 34333444444555555555444
Q ss_pred --------------------cCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhC
Q 036666 228 --------------------GLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGK 287 (350)
Q Consensus 228 --------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 287 (350)
++...-...|..+.++++|++..|++...-..++.++..|+.|++++|.+...-++.+..
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 444444445555666666666666665555555666677777777777776666666677
Q ss_pred CCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 288 LQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 288 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
+++|+.|+|++|+++...+..|..+..|++|.|++|.+...-...|..+++|++||+++|.++
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 777777777777777666666777777777777777776555556777777777777777653
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.1e-28 Score=220.66 Aligned_cols=271 Identities=30% Similarity=0.392 Sum_probs=192.6
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
+.++.++++.|.+....+|+++..+..|+.|||++|++. ..|..+..-+++-.|+|++|.|..+...-|.++..|-+||
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 367788888888877899999999999999999999998 7888899999999999999999844444577899999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCc
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
|++|++. .+|+.+..+.+|++|.+++|.+.......+..+.+|+.|.++++.-....+|..+..+.+|+.++++.|.+.
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 9999998 677778899999999999998754333444556667777777765455667777777777777777777765
Q ss_pred CCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCC--------------------
Q 036666 231 GVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQK-------------------- 290 (350)
Q Consensus 231 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-------------------- 290 (350)
.+|+.+-++.+|+.|++++|.++. +......-.+|++|+++.|+++ .+|..+..+++
T Consensus 236 -~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 456666677777777777776632 2212222345555555555555 44554444444
Q ss_pred -----CCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCC
Q 036666 291 -----LTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 291 -----L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 348 (350)
|+.+..++|.+. .+|+.++.|+.|+.|.|+.|++. .+|+++--++.|+.||++.|+
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 444444444444 55666666666666666666666 566666666666666666664
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.2e-27 Score=212.35 Aligned_cols=270 Identities=27% Similarity=0.339 Sum_probs=201.8
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCC-CCCCcccCCCCCCCEEE
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLS-GPIPEELGQLSLLQFLF 150 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~ 150 (350)
+++.+.+....+ ..+|..++.+.+|+.|++++|++. .+-..+..++.|+.+.+++|.+. .-+|..+.++..|+.||
T Consensus 33 ~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 33 QMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred heeEEEechhhh--hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 556666655554 566777777777777777777766 33344666777777777777654 23556666778888888
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCc
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
|++|++. +.|..+...+++-+|++++|++..+....+.++..|-+|++++|++ ..+|..+..+.+|++|.+++|++.
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL--e~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL--EMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh--hhcCHHHHHHhhhhhhhcCCChhh
Confidence 8888877 6677777777888888888887755555566777788888888762 445666777788888888888776
Q ss_pred CCCCccccCCCcCceEeecccccc-cCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccC
Q 036666 231 GVIPPTFGNLINLQTLALYDTEVF-GSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAEL 309 (350)
Q Consensus 231 ~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 309 (350)
..-...+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|+.+..+++|+.|+||+|+++ .+.-..
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~ 264 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTE 264 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccH
Confidence 544455666777888888776432 356777788889999999999988 78889999999999999999998 444444
Q ss_pred cCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 310 SNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 310 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
....+|+.|+++.|+++ .+|.+++.+++|+.|.+.+|+++
T Consensus 265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 55678999999999999 88999999999999999999875
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.5e-26 Score=196.83 Aligned_cols=267 Identities=31% Similarity=0.482 Sum_probs=178.3
Q ss_pred EEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccC-CCCCCCEEEc
Q 036666 73 VISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELG-QLSLLQFLFL 151 (350)
Q Consensus 73 v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L 151 (350)
+.++|...|.+ +.+|+.++.+..|..|++..|++. ..| .|.++..|+++++..|++. .+|.... +++++.+||+
T Consensus 185 L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 185 LKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHhcccchhhh--hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 34444444444 677777777777777788888776 444 5777777777777777776 5555443 7788888888
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCc-------------------------
Q 036666 152 NTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLT------------------------- 206 (350)
Q Consensus 152 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~------------------------- 206 (350)
.+|++. +.|+.+.-+.+|+.||+++|.++ ..|..++++ +|+.|.+.+|++-+
T Consensus 260 RdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 888888 67777777788888888888887 466677887 78888888886300
Q ss_pred -----------ccCC-h---hhcCCCC--------------------------cCeeecccccCc---------------
Q 036666 207 -----------GEIP-T---QLGMLTN--------------------------LTTFGAAATGLS--------------- 230 (350)
Q Consensus 207 -----------~~~~-~---~l~~~~~--------------------------L~~L~l~~~~~~--------------- 230 (350)
...+ . ......+ .+..+++.|++.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD 416 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence 0000 0 0000112 223333444332
Q ss_pred --------CCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCc
Q 036666 231 --------GVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLS 302 (350)
Q Consensus 231 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 302 (350)
+.+|..++.+++|..|++++|-+ ..+|..++.+..|+.|+++.|.|. .+|..+..+..++.+-.++|++.
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 12233445555666666665544 445555555666666666666666 56666555556666666666666
Q ss_pred ccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 303 GPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 303 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
...++.+.++.+|+.||+.+|.+. .+|+.+++|.+|++|+++||+|.
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 555555888999999999999999 88999999999999999999984
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.5e-21 Score=196.91 Aligned_cols=265 Identities=21% Similarity=0.234 Sum_probs=143.0
Q ss_pred EEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEcc
Q 036666 73 VISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLN 152 (350)
Q Consensus 73 v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 152 (350)
++.+.+.++.+ ..+|..+ ...+|++|++.++.+. .++..+..+++|++|+++++.....+|. +..+++|++|+++
T Consensus 591 Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCC--CCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 44445444433 3444444 2355555555555554 3344445555555555555443333332 4455555555555
Q ss_pred CCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCc-------------------ccCChh-
Q 036666 153 TNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLT-------------------GEIPTQ- 212 (350)
Q Consensus 153 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-------------------~~~~~~- 212 (350)
+|.....+|..+..+++|+.|++++|.....+|..+ ++++|++|++++|.... ..+|..
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc
Confidence 554444555555555555555555544333333322 34444444444443110 011111
Q ss_pred -----------------------------hcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccC
Q 036666 213 -----------------------------LGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGL 263 (350)
Q Consensus 213 -----------------------------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 263 (350)
....++|+.|++++|.....+|..++++++|+.|++++|...+.+|... .
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~ 823 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N 823 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence 0112345555555555555556566666666666666655444444433 4
Q ss_pred CCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 036666 264 CSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLH 343 (350)
Q Consensus 264 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 343 (350)
+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|.++..+++|+.|++++|+-...+|..+..+++|+.++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 566666666665433333332 356777777777776 5677777888888888888654446776777778888888
Q ss_pred CcCCC
Q 036666 344 LSDNM 348 (350)
Q Consensus 344 l~~n~ 348 (350)
+++|.
T Consensus 900 l~~C~ 904 (1153)
T PLN03210 900 FSDCG 904 (1153)
T ss_pred cCCCc
Confidence 87774
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=3.8e-26 Score=194.35 Aligned_cols=263 Identities=31% Similarity=0.473 Sum_probs=228.4
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
....+.++.|.+ ..+.+++.++..+++|++++|++. ..|.++..+.+++.++.++|.+. .+|..+..+.+|.+++.
T Consensus 46 ~l~~lils~N~l--~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDL--EVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCch--hhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 356677888777 677788899999999999999998 67778889999999999999998 78888999999999999
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcC
Q 036666 152 NTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSG 231 (350)
Q Consensus 152 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 231 (350)
+.|.+. +.++.++.+-.++.++..+|+++ ..|..+..+.++..+++.+|+ .....+..+. ++.|+.++...|-++
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh-
Confidence 999998 77788899999999999999988 577778888899999999997 5544455455 899999999988776
Q ss_pred CCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhh-CCCCCCEEeccCccCcccCCccCc
Q 036666 232 VIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELG-KLQKLTSLLLWGNTLSGPIPAELS 310 (350)
Q Consensus 232 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~ 310 (350)
.+|+.++.+.+|.-|++..|++ ..+| .|..|..|++|+++.|++. .+|.... +++++..||+..|+++ +.|+.+.
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 6788899999999999999998 4555 7899999999999999998 6666555 8999999999999999 8889888
Q ss_pred CCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 311 NCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 311 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
-+.+|+.||+++|.++ ..|..++++ +|+.|-+.||++
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 9999999999999999 778889999 999999999986
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=8e-24 Score=179.84 Aligned_cols=276 Identities=24% Similarity=0.282 Sum_probs=167.5
Q ss_pred CEEEEEcCCCCCCCCCCCc-cCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCC-CCCCCCCCcccCCCCCCCEE
Q 036666 72 RVISLSLPDTFLNLSALPP-QLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSS-NSLSGPIPEELGQLSLLQFL 149 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L 149 (350)
..++|++..|.+ ..+|+ .|+.+++|+.|||++|.|+.+-|++|.+++.|.+|-+.+ |+|.....+.|.++..|+.|
T Consensus 68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 566777777776 34443 666777777777777777767777777777766666555 66665555567777777777
Q ss_pred EccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCccc-----------CChhhcCCCC
Q 036666 150 FLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGE-----------IPTQLGMLTN 218 (350)
Q Consensus 150 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----------~~~~l~~~~~ 218 (350)
.+.-|++.-...+.|..++++..|.+..|.+....-..+..+..++.+.+..|+.+..- .+..++....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 77776666555556677777777777777766444446666667777766666521110 1112222222
Q ss_pred cCeeecccccCcCCCCccccCC-CcCceEeecccccccCCc-ccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEec
Q 036666 219 LTTFGAAATGLSGVIPPTFGNL-INLQTLALYDTEVFGSIP-PEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLL 296 (350)
Q Consensus 219 L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 296 (350)
.....+.+.++...-+..+... +.+..--.+.+......| ..|..+++|++|++++|+++..-+.+|.+...++.|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 2222333332222222222111 111111111222223333 34667778888888888887777777777778888888
Q ss_pred cCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 297 WGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 297 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
..|++...-...|.++..|+.|+|.+|+++...|.+|..+.+|.+|++-.|++
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 88877765556677777788888888888777777777777788887777765
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=5.9e-20 Score=186.88 Aligned_cols=250 Identities=22% Similarity=0.250 Sum_probs=147.1
Q ss_pred CCccCCCCC-CCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCC
Q 036666 88 LPPQLSSLS-SLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLAN 166 (350)
Q Consensus 88 ~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 166 (350)
+|..+..++ +|+.|.+.++.+. .+|..| .+.+|++|++.++.+. .++..+..+++|++|+++++.....+|. +..
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 344444443 4666777666665 455555 3577888888888876 5666677888888888887765556664 777
Q ss_pred CCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCcccc--------
Q 036666 167 LTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFG-------- 238 (350)
Q Consensus 167 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-------- 238 (350)
+++|++|++++|.....+|..+..+++|+.|++++|. ....+|..+ ++++|+.|++++|.....+|....
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~-~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~ 733 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE-NLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC-CcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence 8888888888877666778888888888888888876 233344333 466666666666543332221100
Q ss_pred ------------------------------------------CCCcCceEeecccccccCCcccccCCCCCCeEEccCCc
Q 036666 239 ------------------------------------------NLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNK 276 (350)
Q Consensus 239 ------------------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 276 (350)
.+++|+.|++++|.....+|..++++++|+.|++++|.
T Consensus 734 ~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 734 ETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred CCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 01233334444443333344444444444444444443
Q ss_pred CcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCC
Q 036666 277 LTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 277 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 348 (350)
..+.+|... .+++|+.|++++|.....+|.. ..+|+.|++++|.++ .+|..+..+++|++|++++|+
T Consensus 814 ~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 814 NLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 222333322 3444444444444332222221 245666777777666 567778888888898888853
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=1.9e-23 Score=177.58 Aligned_cols=262 Identities=24% Similarity=0.230 Sum_probs=201.0
Q ss_pred CCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccC-CCCCCCCCccC
Q 036666 86 SALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNT-NRLSGSIPPQL 164 (350)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l 164 (350)
..+|..+. +..++++|..|+|+...+.+|+.+++|+.|+|++|.|+.+.|++|.++++|..|.+.+ |+++......|
T Consensus 59 ~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 59 TEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred ccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 67777776 6778999999999988899999999999999999999999999999999999998877 88986666679
Q ss_pred CCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCc------------CC
Q 036666 165 ANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLS------------GV 232 (350)
Q Consensus 165 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~------------~~ 232 (350)
+++..++-|.+.-|++.-...+.+..++++..|.+.+|. .....-..+..+..++.+.+..|.+- ..
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 999999999999999887778889999999999999986 33333347888889999999888732 11
Q ss_pred CCccccCCCcCceEeecccccccCCcccccCC-CCCCeEEccCCcCcccCC-hhhhCCCCCCEEeccCccCcccCCccCc
Q 036666 233 IPPTFGNLINLQTLALYDTEVFGSIPPEIGLC-SELRNLYLHMNKLTGSIP-SELGKLQKLTSLLLWGNTLSGPIPAELS 310 (350)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 310 (350)
.+..++...-..-..+.+.++....+..|... ..+..=-.+.+...+..| ..|..+++|+.|++++|+++++-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 22233333333333333333332222222211 111111112232332333 4688999999999999999999999999
Q ss_pred CCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 311 NCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 311 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
+..+++.|.|..|++...-...|.++..|+.|++++|+||
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 9999999999999998666678999999999999999986
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=5.5e-20 Score=175.43 Aligned_cols=238 Identities=29% Similarity=0.400 Sum_probs=142.7
Q ss_pred EEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccC------------
Q 036666 74 ISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELG------------ 141 (350)
Q Consensus 74 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~------------ 141 (350)
..++++.+.+ ..+|+.+. ++|+.|++.+|+++. +|. .+++|++|++++|.++ .+|..+.
T Consensus 204 ~~LdLs~~~L--tsLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCC--CcCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCch
Confidence 3455555554 34555443 355666666665552 332 1355566666666555 2332110
Q ss_pred -----CCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCC
Q 036666 142 -----QLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGML 216 (350)
Q Consensus 142 -----~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~ 216 (350)
..++|+.|++++|+++ .+|. ..++|+.|++++|++.+ +|.. ..+|+.|++++|. +.. +|. ..
T Consensus 275 ~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~-L~~-LP~---lp 341 (788)
T PRK15387 275 THLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQ-LTS-LPT---LP 341 (788)
T ss_pred hhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCc-ccc-ccc---cc
Confidence 0123444455555444 2222 12456666666665553 2221 1235555555554 221 221 12
Q ss_pred CCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEec
Q 036666 217 TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLL 296 (350)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 296 (350)
.+|+.|++++|++++ +|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|.. .++|+.|++
T Consensus 342 ~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdL 409 (788)
T PRK15387 342 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMV 409 (788)
T ss_pred cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEc
Confidence 367788888887774 3332 3467777777777753 4432 257889999999888 45543 367999999
Q ss_pred cCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 297 WGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 297 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
++|++.+ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|+|+
T Consensus 410 S~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 410 SGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 9999884 5543 346888999999998 78989999999999999999985
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=3.6e-20 Score=177.50 Aligned_cols=246 Identities=26% Similarity=0.416 Sum_probs=190.1
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
..+.+++++..+ ..+|..+. ++++.|++++|+++ .+|..+. ++|++|++++|.+. .+|..+. +.|+.|++
T Consensus 179 ~~~~L~L~~~~L--tsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGL--TTIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCc--CcCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 467888888776 56777664 58999999999998 4555443 58999999999988 5665543 47999999
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcC
Q 036666 152 NTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSG 231 (350)
Q Consensus 152 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 231 (350)
++|++. .+|..+. .+|+.|++++|++. .+|..+. ++|++|++++|. +.. ++..+ .++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~-Lt~-LP~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNS-IRT-LPAHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCc-ccc-Ccccc--hhhHHHHHhcCCcccc
Confidence 999998 6666554 58999999999988 4565443 589999999997 443 33322 2478999999999885
Q ss_pred CCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcC
Q 036666 232 VIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSN 311 (350)
Q Consensus 232 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 311 (350)
+|..+ .++|+.|++++|.+.+ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+. .+|..+.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH-
Confidence 44433 3689999999999865 555553 78999999999998 567655 368999999999998 5565553
Q ss_pred CCCCCEEEccCCcCcccCCccc----cCCCCCCEEeCcCCCCC
Q 036666 312 CSALVVLDASANDLSGELPGDL----GKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 312 ~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~ 350 (350)
..|+.|++++|++. .+|..+ ..++.+..|++.+|+++
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 47999999999998 555544 34588999999999985
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=1.5e-22 Score=179.52 Aligned_cols=273 Identities=25% Similarity=0.266 Sum_probs=185.5
Q ss_pred EEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcC----CCcCCCCCCCCCeEeCCCCCCCC------CCCcccCCCCC
Q 036666 76 LSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGI----IPPSFGQLTHLRLLDLSSNSLSG------PIPEELGQLSL 145 (350)
Q Consensus 76 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~~~~~~------~~~~~~~~l~~ 145 (350)
|++..+.+........+..+..|++|+++++.++.. ++..+...+.|++++++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555544334444455566688888888877432 34445667778888888877652 12234666788
Q ss_pred CCEEEccCCCCCCCCCccCCCCC---CCCEEEcccCcCCC----CCCccCCCC-CCCCEEeccCCCCCcc----cCChhh
Q 036666 146 LQFLFLNTNRLSGSIPPQLANLT---SLQVLCLQDNLLNG----SIPSQLGSL-VSLQQFRIGGNPYLTG----EIPTQL 213 (350)
Q Consensus 146 L~~L~L~~n~~~~~~~~~l~~l~---~L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~~l 213 (350)
|++|++++|.+.+..+..+..+. +|++|++++|++.. .+...+..+ ++|+.|++++|. +.. .+...+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKAL 161 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHH
Confidence 88888888888755555444444 48888888887763 122334555 788899998887 442 234456
Q ss_pred cCCCCcCeeecccccCcCC----CCccccCCCcCceEeecccccccCC----cccccCCCCCCeEEccCCcCcccCChhh
Q 036666 214 GMLTNLTTFGAAATGLSGV----IPPTFGNLINLQTLALYDTEVFGSI----PPEIGLCSELRNLYLHMNKLTGSIPSEL 285 (350)
Q Consensus 214 ~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 285 (350)
..+++|++|++++|.+++. ++..+...+.|++|++++|.+.+.. ...+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 6778899999999888742 3334556678999999998875432 3345677899999999998885322222
Q ss_pred h-----CCCCCCEEeccCccCcc----cCCccCcCCCCCCEEEccCCcCccc----CCccccCC-CCCCEEeCcCCCC
Q 036666 286 G-----KLQKLTSLLLWGNTLSG----PIPAELSNCSALVVLDASANDLSGE----LPGDLGKL-VLLEQLHLSDNML 349 (350)
Q Consensus 286 ~-----~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l 349 (350)
. ..+.|++|++++|.+++ .+...+..+++|+.+++++|.+.+. ....+... +.|+++|+.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 24789999999999863 2344556678999999999999855 33444445 7899999998875
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.7e-22 Score=186.92 Aligned_cols=244 Identities=31% Similarity=0.363 Sum_probs=158.2
Q ss_pred CCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcc
Q 036666 97 SLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQ 176 (350)
Q Consensus 97 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 176 (350)
+|++++++.|.+. .+|..+..+.+|+.++..+|++. .+|..+....+|+.|.+..|.+. -+|.....++.|++|++.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 4445555555444 23344444455555555555443 34444444444555555555444 333444445555555555
Q ss_pred cCcCCCCCCccCCCCCC-CCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeeccccccc
Q 036666 177 DNLLNGSIPSQLGSLVS-LQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFG 255 (350)
Q Consensus 177 ~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 255 (350)
.|++....+..+..... ++.+..+.|+ +.......=..++.|+.|++.+|.++...-+.+.+.+.|+.|++++|++..
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 55554322222222221 3344444433 222222222345678888999999988777788889999999999999866
Q ss_pred CCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCccc-CCcccc
Q 036666 256 SIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGE-LPGDLG 334 (350)
Q Consensus 256 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~ 334 (350)
.....+.++..|++|++++|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|.+... +|....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 66666888999999999999999 78899999999999999999998 667 677899999999999988743 333333
Q ss_pred CCCCCCEEeCcCCC
Q 036666 335 KLVLLEQLHLSDNM 348 (350)
Q Consensus 335 ~l~~L~~L~l~~n~ 348 (350)
-++|++||++||.
T Consensus 475 -~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 -SPNLKYLDLSGNT 487 (1081)
T ss_pred -CcccceeeccCCc
Confidence 3899999999985
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=1.9e-21 Score=172.57 Aligned_cols=250 Identities=26% Similarity=0.276 Sum_probs=186.0
Q ss_pred EEECCCCcCC-cCCCcCCCCCCCCCeEeCCCCCCCCC----CCcccCCCCCCCEEEccCCCCCC------CCCccCCCCC
Q 036666 100 LLNLSSTNIS-GIIPPSFGQLTHLRLLDLSSNSLSGP----IPEELGQLSLLQFLFLNTNRLSG------SIPPQLANLT 168 (350)
Q Consensus 100 ~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~------~~~~~l~~l~ 168 (350)
.|+|.++.+. ......+..+..|++++++++.+... ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 33445566778899999999998532 34456677889999999988762 2234567789
Q ss_pred CCCEEEcccCcCCCCCCccCCCCC---CCCEEeccCCCCCcc----cCChhhcCC-CCcCeeecccccCcCC----CCcc
Q 036666 169 SLQVLCLQDNLLNGSIPSQLGSLV---SLQQFRIGGNPYLTG----EIPTQLGML-TNLTTFGAAATGLSGV----IPPT 236 (350)
Q Consensus 169 ~L~~L~l~~n~~~~~~~~~~~~l~---~L~~L~l~~n~~~~~----~~~~~l~~~-~~L~~L~l~~~~~~~~----~~~~ 236 (350)
+|+.|++++|.+....+..+..+. +|++|++++|+ ..+ .+...+..+ ++|+.|++++|.+++. ++..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 999999999998755554444444 49999999998 442 223455667 8999999999998843 3445
Q ss_pred ccCCCcCceEeecccccccC----CcccccCCCCCCeEEccCCcCccc----CChhhhCCCCCCEEeccCccCcccCCcc
Q 036666 237 FGNLINLQTLALYDTEVFGS----IPPEIGLCSELRNLYLHMNKLTGS----IPSELGKLQKLTSLLLWGNTLSGPIPAE 308 (350)
Q Consensus 237 l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 308 (350)
+..+..|++|++++|.+.+. ++..+..+++|++|++++|.+++. +...+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 66778999999999998743 233455667999999999998743 3345667899999999999998632222
Q ss_pred Cc-----CCCCCCEEEccCCcCcc----cCCccccCCCCCCEEeCcCCCCC
Q 036666 309 LS-----NCSALVVLDASANDLSG----ELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 309 ~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
+. ..+.|+.|++++|.+++ .+...+..+++|+++++++|+++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 21 24799999999999973 23445667789999999999875
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=4.2e-21 Score=179.05 Aligned_cols=268 Identities=27% Similarity=0.310 Sum_probs=215.1
Q ss_pred CCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEE
Q 036666 70 QNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFL 149 (350)
Q Consensus 70 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 149 (350)
....+.++++.+.+ ..+|..+..+.+|+.++..+|.+. .+|..+....+|+.|.+.+|.+. .+|....+++.|++|
T Consensus 240 p~nl~~~dis~n~l--~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNL--SNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred cccceeeecchhhh--hcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 34677888888877 678889999999999999999996 67777888999999999999998 777778889999999
Q ss_pred EccCCCCCCCCCccC-CCCC-CCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccc
Q 036666 150 FLNTNRLSGSIPPQL-ANLT-SLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAAT 227 (350)
Q Consensus 150 ~L~~n~~~~~~~~~l-~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~ 227 (350)
+|..|++. ..|+.+ .-.. .|..++.+.|++....-..=...+.|+.|++.+|. +++.....+.++.+|+.|++++|
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-ccccchhhhccccceeeeeeccc
Confidence 99999998 455543 3222 36777888887763222222245679999999999 78888788999999999999999
Q ss_pred cCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCccc-CC
Q 036666 228 GLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGP-IP 306 (350)
Q Consensus 228 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~ 306 (350)
.+.......+.+++.|++|+++||++ ..+|..+..++.|++|...+|++. .+| .+..++.|+.+|++.|+++.. +|
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 99877777889999999999999999 466788899999999999999999 777 688999999999999999854 33
Q ss_pred ccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCC
Q 036666 307 AELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDN 347 (350)
Q Consensus 307 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 347 (350)
... .-++|++||+++|.-....-..|..+.++...++.-|
T Consensus 471 ~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 471 EAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 333 3389999999999643233345556666666655544
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=2.7e-18 Score=164.74 Aligned_cols=224 Identities=26% Similarity=0.409 Sum_probs=174.4
Q ss_pred CCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 036666 96 SSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCL 175 (350)
Q Consensus 96 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 175 (350)
.+.+.|++++++++ .+|..+. +.|+.|++++|.+. .+|..+. ++|++|++++|+++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45788999999988 4565443 57999999999998 5665543 58999999999998 5666543 57999999
Q ss_pred ccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeeccccccc
Q 036666 176 QDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFG 255 (350)
Q Consensus 176 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 255 (350)
++|.+. .+|..+. .+|+.|++++|. +. .+|..+. ++|+.|++++|.++. +|..+. +.|+.|++++|.+..
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~-L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNK-IS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCc-cC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 999988 4565543 479999999997 44 3454443 589999999999885 344333 479999999999864
Q ss_pred CCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccC
Q 036666 256 SIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGK 335 (350)
Q Consensus 256 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 335 (350)
+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.++ .+|..+.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred -CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH-
Confidence 44433 368999999999998 4666553 79999999999998 566655 378999999999999 5666554
Q ss_pred CCCCCEEeCcCCCCC
Q 036666 336 LVLLEQLHLSDNMLT 350 (350)
Q Consensus 336 l~~L~~L~l~~n~l~ 350 (350)
.+|+.|++++|+|+
T Consensus 388 -~sL~~LdLs~N~L~ 401 (754)
T PRK15370 388 -AALQIMQASRNNLV 401 (754)
T ss_pred -HHHHHHhhccCCcc
Confidence 47999999999874
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=5.7e-18 Score=161.77 Aligned_cols=227 Identities=26% Similarity=0.353 Sum_probs=165.8
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCC-----------------CCCCCeEeCCCCCCC
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQ-----------------LTHLRLLDLSSNSLS 133 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-----------------l~~L~~L~L~~~~~~ 133 (350)
.+++.|++.+|.+ +.+|.. .++|++|++++|+++. +|....+ ..+|+.|++++|.+.
T Consensus 222 ~~L~~L~L~~N~L--t~LP~l---p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 222 AHITTLVIPDNNL--TSLPAL---PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 295 (788)
T ss_pred cCCCEEEccCCcC--CCCCCC---CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc
Confidence 3678888888877 456642 4678888888888873 3422111 123455555555555
Q ss_pred CCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhh
Q 036666 134 GPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL 213 (350)
Q Consensus 134 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l 213 (350)
.+|. ..++|++|++++|++++ +|.. ..+|+.|++++|.+++ +|.. ..+|++|++++|. +.. +|..
T Consensus 296 -~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~-Ls~-LP~l- 360 (788)
T PRK15387 296 -SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQ-LAS-LPTL- 360 (788)
T ss_pred -cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCc-cCC-CCCC-
Confidence 2332 24789999999999984 4542 2468889999999874 4532 2479999999998 443 3332
Q ss_pred cCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCE
Q 036666 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTS 293 (350)
Q Consensus 214 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 293 (350)
.++|+.|++++|.++. +|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|+++ .+|.. ..+|+.
T Consensus 361 --p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~ 426 (788)
T PRK15387 361 --PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLS 426 (788)
T ss_pred --Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhh
Confidence 4578899999999885 4543 3579999999999864 4433 368999999999998 46653 357899
Q ss_pred EeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccc
Q 036666 294 LLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDL 333 (350)
Q Consensus 294 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 333 (350)
|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 999999998 789989999999999999999998877665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.1e-19 Score=136.55 Aligned_cols=156 Identities=29% Similarity=0.529 Sum_probs=95.0
Q ss_pred CCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCC
Q 036666 92 LSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQ 171 (350)
Q Consensus 92 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 171 (350)
+.++.+++.|.+++|+++ ..|+.++.+.+|+.|++.+|++. ..|.+++.+++|+.|++..|++. ..|..|+.+|-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 334566777777777777 55556777777777777777776 66667777777777777777766 6667777777777
Q ss_pred EEEcccCcCCC-CCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecc
Q 036666 172 VLCLQDNLLNG-SIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYD 250 (350)
Q Consensus 172 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 250 (350)
.||+.+|++.. .+|..|..+..|+.|++++|. ...+|..++++++|+.|.+..|.+- .+|..++.+.+|++|++.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCC--cccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 77777766543 345555555555555555553 2333444455555555555554443 3344445555555555555
Q ss_pred ccc
Q 036666 251 TEV 253 (350)
Q Consensus 251 ~~~ 253 (350)
|++
T Consensus 183 nrl 185 (264)
T KOG0617|consen 183 NRL 185 (264)
T ss_pred cee
Confidence 544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.3e-19 Score=135.48 Aligned_cols=152 Identities=31% Similarity=0.548 Sum_probs=77.5
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
+++.+.++.+.+ ..+|+.+..+.+|+.|++++|+++ .+|..++++++|+.|++.-|++. +.|..|+.+|.|+.||+
T Consensus 34 ~ITrLtLSHNKl--~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSHNKL--TVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhcccCce--eecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 445555555554 344555555555555555555554 44444555555555555555544 44555555555555555
Q ss_pred cCCCCC-CCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCc
Q 036666 152 NTNRLS-GSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 152 ~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
..|++. ..+|..|..+..|+.|.++.|.+. .+|..++.+++|+.|.+++|.+ -..|..++.+..|++|++.+|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHHHHhcccceee
Confidence 555543 234444555555555555555544 3444455555555555555532 234445555555555555555554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=1.3e-14 Score=138.57 Aligned_cols=149 Identities=40% Similarity=0.603 Sum_probs=114.4
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC-----CcCceeeCCC-----CCEEEEEcCCCCCCCCCCCcc
Q 036666 22 SSLSPDGEALLSLISAAGPSAKASSSILSSWNPSNLTPC-----SWQGITCSPQ-----NRVISLSLPDTFLNLSALPPQ 91 (350)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~c-----~~~~~~c~~~-----~~v~~l~l~~~~~~~~~~~~~ 91 (350)
.....|..++..++..++ ++. ..+|.. ++| .|.|+.|... ..++.|+++++.+. +.+|..
T Consensus 368 ~t~~~~~~aL~~~k~~~~----~~~--~~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~-g~ip~~ 437 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG----LPL--RFGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR-GFIPND 437 (623)
T ss_pred ccCchHHHHHHHHHHhcC----Ccc--cCCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCCCcc-ccCCHH
Confidence 456678999999999886 332 147862 455 6999999532 24788888888887 778888
Q ss_pred CCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCC-CCC
Q 036666 92 LSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANL-TSL 170 (350)
Q Consensus 92 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L 170 (350)
+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|++|++++|++++.+|..+... .++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888776543 455
Q ss_pred CEEEcccCcC
Q 036666 171 QVLCLQDNLL 180 (350)
Q Consensus 171 ~~L~l~~n~~ 180 (350)
..+++.+|..
T Consensus 518 ~~l~~~~N~~ 527 (623)
T PLN03150 518 ASFNFTDNAG 527 (623)
T ss_pred ceEEecCCcc
Confidence 6677766653
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.1e-13 Score=120.03 Aligned_cols=211 Identities=20% Similarity=0.139 Sum_probs=152.0
Q ss_pred CCCCCCCeEeCCCCCCCCCCC-cccCCCCCCCEEEccCCCCCC--CCCccCCCCCCCCEEEcccCcCCCCCCcc-CCCCC
Q 036666 117 GQLTHLRLLDLSSNSLSGPIP-EELGQLSLLQFLFLNTNRLSG--SIPPQLANLTSLQVLCLQDNLLNGSIPSQ-LGSLV 192 (350)
Q Consensus 117 ~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~l~ 192 (350)
+++.+|+...|+++.+..... .....|++++.|+|+.|-+.. .+......+|+|+.|+++.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 457889999999998763221 356679999999999987662 22334568899999999999976432221 22567
Q ss_pred CCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCc-ccccCCCCCCeEE
Q 036666 193 SLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIP-PEIGLCSELRNLY 271 (350)
Q Consensus 193 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 271 (350)
+|+.|.++.|++........+..+|+|+.|++.+|..-........-++.|+.|+|++|++..... ...+.++.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 899999999995444555667889999999999995322222334456789999999998754431 3457889999999
Q ss_pred ccCCcCccc-CChh-----hhCCCCCCEEeccCccCccc-CCccCcCCCCCCEEEccCCcCcc
Q 036666 272 LHMNKLTGS-IPSE-----LGKLQKLTSLLLWGNTLSGP-IPAELSNCSALVVLDASANDLSG 327 (350)
Q Consensus 272 l~~n~l~~~-~~~~-----~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~ 327 (350)
++.+++.+. .|+. ...+++|++|++..|++... ....+..+++|+.|.+..|.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 999998752 3333 35678999999999999632 12235567888888888887764
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.4e-13 Score=119.39 Aligned_cols=210 Identities=20% Similarity=0.172 Sum_probs=152.8
Q ss_pred CCCCCCCEEEccCCCCCCCCC-ccCCCCCCCCEEEcccCcCCCC--CCccCCCCCCCCEEeccCCCCCcccCChhhcCCC
Q 036666 141 GQLSLLQFLFLNTNRLSGSIP-PQLANLTSLQVLCLQDNLLNGS--IPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLT 217 (350)
Q Consensus 141 ~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~ 217 (350)
.++.+|++..|.++.+..... .....+++++.||++.|-+... +......+|+|+.|+++.|++........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467899999999988772221 3567899999999999977632 2234567899999999999843333333344678
Q ss_pred CcCeeecccccCcCC-CCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccC-ChhhhCCCCCCEEe
Q 036666 218 NLTTFGAAATGLSGV-IPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSI-PSELGKLQKLTSLL 295 (350)
Q Consensus 218 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ 295 (350)
.|+.|.++.|+++.. +...+..++.|+.|.+.+|.....-......+..|+.|++++|.+.+.. -...+.+|.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 999999999998742 3344567899999999999633333334456788999999999987432 13567899999999
Q ss_pred ccCccCccc-CCcc-----CcCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEeCcCCCCC
Q 036666 296 LWGNTLSGP-IPAE-----LSNCSALVVLDASANDLSGELP-GDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 296 l~~n~~~~~-~~~~-----~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 350 (350)
++.+.+.+. .|+. ...+++|+.|++..|++.+... ..+..+++|+.|.+.+|+++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 999998763 3333 3457999999999999963321 24455678888888888764
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=5.5e-12 Score=115.23 Aligned_cols=175 Identities=34% Similarity=0.529 Sum_probs=79.9
Q ss_pred CCCCCeEeCCCCCCCCCCCcccCCCC-CCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEE
Q 036666 119 LTHLRLLDLSSNSLSGPIPEELGQLS-LLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQF 197 (350)
Q Consensus 119 l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 197 (350)
++.++.|++.++.+. .++......+ +|++|++++|++. .+|..++.+++|+.|+++.|++. .++......+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 344555555555554 2333333332 5555555555554 23333445555555555555544 233333344455555
Q ss_pred eccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcC
Q 036666 198 RIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKL 277 (350)
Q Consensus 198 ~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 277 (350)
++++|. + ..++........|+++.+++|... ..+..+.++.++..+.+.+|.+.. .+..+..+++++.|++++|++
T Consensus 192 ~ls~N~-i-~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 192 DLSGNK-I-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eccCCc-c-ccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccc
Confidence 555553 1 222222233344555555555322 122334444555555555444421 133344455555555555555
Q ss_pred cccCChhhhCCCCCCEEeccCccCc
Q 036666 278 TGSIPSELGKLQKLTSLLLWGNTLS 302 (350)
Q Consensus 278 ~~~~~~~~~~~~~L~~L~l~~n~~~ 302 (350)
+. ++. +....+++.|++++|.+.
T Consensus 268 ~~-i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 268 SS-ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cc-ccc-ccccCccCEEeccCcccc
Confidence 52 222 445555555555555544
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=2e-13 Score=115.31 Aligned_cols=235 Identities=23% Similarity=0.221 Sum_probs=144.8
Q ss_pred ccCCCCCCCCEEECCCCcCCcC----CCcCCCCCCCCCeEeCCCCC---CCCCCCc-------ccCCCCCCCEEEccCCC
Q 036666 90 PQLSSLSSLQLLNLSSTNISGI----IPPSFGQLTHLRLLDLSSNS---LSGPIPE-------ELGQLSLLQFLFLNTNR 155 (350)
Q Consensus 90 ~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~~~---~~~~~~~-------~~~~l~~L~~L~L~~n~ 155 (350)
+.+..+..++++++++|.+... +...+.+.+.|+..++++-. ....+|. ++.++|+|++++||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455667889999999998643 44556777889999998753 2233443 34577899999999998
Q ss_pred CCCCCCcc----CCCCCCCCEEEcccCcCCCCC-------------CccCCCCCCCCEEeccCCCCCccc----CChhhc
Q 036666 156 LSGSIPPQ----LANLTSLQVLCLQDNLLNGSI-------------PSQLGSLVSLQQFRIGGNPYLTGE----IPTQLG 214 (350)
Q Consensus 156 ~~~~~~~~----l~~l~~L~~L~l~~n~~~~~~-------------~~~~~~l~~L~~L~l~~n~~~~~~----~~~~l~ 214 (350)
+....+.. +..+..|++|.+.+|.+...- ......-++|+.+...+|+ +.+. +...+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~ 182 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQ 182 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHH
Confidence 87544443 345688888888888765211 1223445677777777776 3332 234456
Q ss_pred CCCCcCeeecccccCcCC----CCccccCCCcCceEeecccccccCC----cccccCCCCCCeEEccCCcCcccCChhh-
Q 036666 215 MLTNLTTFGAAATGLSGV----IPPTFGNLINLQTLALYDTEVFGSI----PPEIGLCSELRNLYLHMNKLTGSIPSEL- 285 (350)
Q Consensus 215 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~- 285 (350)
..+.|+.+.+..|.+... +...+..++.|+.|++.+|.++... ...++.+++|+.|++++|.+.......+
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 667777777777766532 2234556677777777777664322 2334455666777777666654322222
Q ss_pred ----hCCCCCCEEeccCccCccc----CCccCcCCCCCCEEEccCCcC
Q 036666 286 ----GKLQKLTSLLLWGNTLSGP----IPAELSNCSALVVLDASANDL 325 (350)
Q Consensus 286 ----~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l 325 (350)
...|+|+.+.+.+|.++.. +.......|.|+.|+|++|++
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2356667777777666532 222233456666666666666
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=2e-13 Score=115.33 Aligned_cols=233 Identities=21% Similarity=0.226 Sum_probs=163.6
Q ss_pred CCCEEEEEcCCCCCCCC---CCCccCCCCCCCCEEECCCC---cCCcCCC-------cCCCCCCCCCeEeCCCCCCCCCC
Q 036666 70 QNRVISLSLPDTFLNLS---ALPPQLSSLSSLQLLNLSST---NISGIIP-------PSFGQLTHLRLLDLSSNSLSGPI 136 (350)
Q Consensus 70 ~~~v~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~n---~i~~~~~-------~~~~~l~~L~~L~L~~~~~~~~~ 136 (350)
...++.+++++|.+..+ .+...+.+.++|+..+++.- .....+| +.+..+++|++++||+|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 45789999999988522 22345666678888888753 2222333 33456789999999999887444
Q ss_pred Ccc----cCCCCCCCEEEccCCCCCCCC-------------CccCCCCCCCCEEEcccCcCCCC----CCccCCCCCCCC
Q 036666 137 PEE----LGQLSLLQFLFLNTNRLSGSI-------------PPQLANLTSLQVLCLQDNLLNGS----IPSQLGSLVSLQ 195 (350)
Q Consensus 137 ~~~----~~~l~~L~~L~L~~n~~~~~~-------------~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~ 195 (350)
+.. +..+..|++|.|.+|.+.-.- ......-++|+++...+|++... +...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 433 456789999999999876211 11234457899999999987532 223466778999
Q ss_pred EEeccCCCCCccc---CChhhcCCCCcCeeecccccCcCC----CCccccCCCcCceEeecccccccCCcccc-----cC
Q 036666 196 QFRIGGNPYLTGE---IPTQLGMLTNLTTFGAAATGLSGV----IPPTFGNLINLQTLALYDTEVFGSIPPEI-----GL 263 (350)
Q Consensus 196 ~L~l~~n~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~ 263 (350)
.+.+..|.+.... ....+..+++|+.|++..|.++.. +...++.++.|+.|++++|.+...-...+ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 9999998743322 245678899999999999988743 34567778899999999998865544332 24
Q ss_pred CCCCCeEEccCCcCccc----CChhhhCCCCCCEEeccCccCc
Q 036666 264 CSELRNLYLHMNKLTGS----IPSELGKLQKLTSLLLWGNTLS 302 (350)
Q Consensus 264 ~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~ 302 (350)
.|+|+.|.+.+|.++.. +...+...|.|+.|++++|.+.
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 68999999999988732 2234456789999999999983
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=2e-11 Score=111.49 Aligned_cols=201 Identities=32% Similarity=0.436 Sum_probs=144.4
Q ss_pred CeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCC-CCCEEEcccCcCCCCCCccCCCCCCCCEEeccC
Q 036666 123 RLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLT-SLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGG 201 (350)
Q Consensus 123 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 201 (350)
..+.+..+.+... ...+...+.++.|++.+|.++ .++....... +|+.+++++|.+. .++..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 3577777776422 233456678999999999888 5555566664 8999999999887 4555677888999999988
Q ss_pred CCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccC
Q 036666 202 NPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSI 281 (350)
Q Consensus 202 n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 281 (350)
|+ +. .++......++|+.|++++|.+. .+|..+.....|+++.+++|.. -..+..+..+.++..+.+.+|++. .+
T Consensus 173 N~-l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 173 ND-LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred ch-hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceee-ec
Confidence 87 32 33334447788888888888887 3454455566688888888853 234455677778888888888877 44
Q ss_pred ChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccc
Q 036666 282 PSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDL 333 (350)
Q Consensus 282 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 333 (350)
+..++.++++++|++++|.+..... +....+++.+++++|.+....|...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 5677788888888888888884433 6778888888888888876655433
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=2.9e-13 Score=121.10 Aligned_cols=180 Identities=27% Similarity=0.420 Sum_probs=122.8
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeee
Q 036666 144 SLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFG 223 (350)
Q Consensus 144 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~ 223 (350)
.--...+++.|++. ++|..+..+-.|+.+.++.|.+. .+|..+.++..|.+++++.|.+ ...|..+-.++ |+.|.
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEE
Confidence 33456678888887 67777777777888888888776 5777778888888888887762 22333333333 66777
Q ss_pred cccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcc
Q 036666 224 AAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSG 303 (350)
Q Consensus 224 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 303 (350)
+++|+++ .+|..++....|.+|+.+.|.+. .+|..+.++.+|+.|.+..|.+. .+|..+.. -.|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence 7777766 45666667777777777777763 44555666777777777777777 55555653 35777777777777
Q ss_pred cCCccCcCCCCCCEEEccCCcCcccCCcccc
Q 036666 304 PIPAELSNCSALVVLDASANDLSGELPGDLG 334 (350)
Q Consensus 304 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 334 (350)
.+|-.|..|..|++|-|.+|.+. ..|..++
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 66777777777777777777777 4444444
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=2.8e-12 Score=106.56 Aligned_cols=134 Identities=23% Similarity=0.205 Sum_probs=89.8
Q ss_pred hhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCC
Q 036666 211 TQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQK 290 (350)
Q Consensus 211 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 290 (350)
..+..+..|++++++.|.++ .+.++..-.+.++.|+++.|.+... +.++.+++|++||+++|.++ .+..+-..+-+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 34455667777777777776 3344555667778888888877443 23677778888888888777 44445556677
Q ss_pred CCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccC-CccccCCCCCCEEeCcCCCCC
Q 036666 291 LTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGEL-PGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 291 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 350 (350)
+++|.+++|.+... ..+..+-+|..||+++|++.... -..++++|.|+.+.+.+|+++
T Consensus 354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 78888888877522 23455667777888888775322 246777788888888888763
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=3e-11 Score=115.76 Aligned_cols=106 Identities=31% Similarity=0.521 Sum_probs=87.2
Q ss_pred CceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccC
Q 036666 243 LQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASA 322 (350)
Q Consensus 243 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 322 (350)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcCcccCCccccCC-CCCCEEeCcCCC
Q 036666 323 NDLSGELPGDLGKL-VLLEQLHLSDNM 348 (350)
Q Consensus 323 n~l~~~~~~~~~~l-~~L~~L~l~~n~ 348 (350)
|.++|.+|..+... .++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 88888888777653 456677777775
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=4.1e-13 Score=120.22 Aligned_cols=191 Identities=27% Similarity=0.441 Sum_probs=135.7
Q ss_pred CeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCC
Q 036666 123 RLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGN 202 (350)
Q Consensus 123 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 202 (350)
...+++.|++. .+|..++.+..|+.+.++.|.+- .+|..+.++..|.+++++.|+++ ..|..+..++ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 44556666665 56666666666666666666665 55666666666677777776666 4555555554 666666666
Q ss_pred CCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCC
Q 036666 203 PYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIP 282 (350)
Q Consensus 203 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 282 (350)
++ ..+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++.. +|..+..+ .|..||++.|++. .+|
T Consensus 154 kl--~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 154 KL--TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred cc--ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ecc
Confidence 52 345555666777777888887776 557788999999999999999854 55556644 5899999999999 899
Q ss_pred hhhhCCCCCCEEeccCccCcccCCccCcCCCC---CCEEEccCCc
Q 036666 283 SELGKLQKLTSLLLWGNTLSGPIPAELSNCSA---LVVLDASAND 324 (350)
Q Consensus 283 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~---L~~L~l~~n~ 324 (350)
..|..|..|++|.|.+|.+. ..|..++..-. .++|+..-|+
T Consensus 228 v~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 99999999999999999998 55655543332 3567777674
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=3.1e-11 Score=95.54 Aligned_cols=125 Identities=23% Similarity=0.228 Sum_probs=42.2
Q ss_pred CCCCcCeeecccccCcCCCCcccc-CCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhh-hCCCCCC
Q 036666 215 MLTNLTTFGAAATGLSGVIPPTFG-NLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSEL-GKLQKLT 292 (350)
Q Consensus 215 ~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~ 292 (350)
+..++++|++.+|.++.. +.++ .+.+|+.|++++|.+... +.+..+++|++|++++|.+++ +...+ ..+|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 334556666666666532 2343 356677777777777443 245667777778888887773 33333 3577788
Q ss_pred EEeccCccCccc-CCccCcCCCCCCEEEccCCcCcccCC---ccccCCCCCCEEeC
Q 036666 293 SLLLWGNTLSGP-IPAELSNCSALVVLDASANDLSGELP---GDLGKLVLLEQLHL 344 (350)
Q Consensus 293 ~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 344 (350)
.|++++|++.+. --..+..+++|+.|++.+|+++...- ..+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888888877642 12345567778888888887764311 23456777777764
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=1.7e-11 Score=120.22 Aligned_cols=149 Identities=28% Similarity=0.326 Sum_probs=91.3
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCc--CCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEE
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTN--ISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFL 149 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 149 (350)
.++++.+.++.+ ..++... .+++|++|-+..|. +.......|..++.|++|||++|.-.+.+|..++.+.+|++|
T Consensus 524 ~~rr~s~~~~~~--~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKI--EHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccch--hhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 445555555444 2233322 23467777776664 433333446677888888888776666777777778888888
Q ss_pred EccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCC-CCcccCChhhcCCCCcCeeec
Q 036666 150 FLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNP-YLTGEIPTQLGMLTNLTTFGA 224 (350)
Q Consensus 150 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~l~~~~~L~~L~l 224 (350)
+++++.+. .+|..+.++..|.+|++..+.....++.....+.+|++|.+.... .........+..+.+|+.+.+
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 88877777 677777777788888877766554555556667777777776543 112222333444444444444
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=3.5e-11 Score=95.22 Aligned_cols=82 Identities=39% Similarity=0.497 Sum_probs=17.8
Q ss_pred CCCCCEEECCCCcCCcCCCcCCC-CCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccC-CCCCCCCE
Q 036666 95 LSSLQLLNLSSTNISGIIPPSFG-QLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQL-ANLTSLQV 172 (350)
Q Consensus 95 ~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~ 172 (350)
...+++|+|.+|.|+.. . .+. .+.+|+.|++++|.+... . .+..+++|++|++++|.++. +.+.+ ..+|+|++
T Consensus 18 ~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 34556666666666532 1 233 355666666666666532 1 24555666666666666553 22222 23555666
Q ss_pred EEcccCcCC
Q 036666 173 LCLQDNLLN 181 (350)
Q Consensus 173 L~l~~n~~~ 181 (350)
|++++|++.
T Consensus 93 L~L~~N~I~ 101 (175)
T PF14580_consen 93 LYLSNNKIS 101 (175)
T ss_dssp EE-TTS---
T ss_pred EECcCCcCC
Confidence 666655554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.10 E-value=5.5e-11 Score=77.60 Aligned_cols=61 Identities=38% Similarity=0.409 Sum_probs=46.1
Q ss_pred CCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 289 QKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 289 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
|+|++|++++|++....+..|.++++|+.|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777766666777777788888887777766667777788888888887764
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=4.4e-11 Score=117.33 Aligned_cols=178 Identities=29% Similarity=0.374 Sum_probs=119.7
Q ss_pred CEEEEEcCCCCCCCCCCCc-cCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 72 RVISLSLPDTFLNLSALPP-QLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.++++-+.++......++. .|..++.|++|||++|.--+.+|..++.+-+|++|+++++.+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 5777877777521134444 4778999999999998777799999999999999999999998 8999999999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCC--CCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCe----eec
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLN--GSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTT----FGA 224 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~----L~l 224 (350)
+..+.....+|.....+++|++|.+..-... ......+..+.+|+.+...... ......+..+.+|.+ +.+
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS---VLLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch---hHhHhhhhhhHHHHHHhHhhhh
Confidence 9988776666777777999999999775422 1222233445555555543322 112222333333332 222
Q ss_pred ccccCcCCCCccccCCCcCceEeecccccc
Q 036666 225 AATGLSGVIPPTFGNLINLQTLALYDTEVF 254 (350)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 254 (350)
.++.. ...+..+..+.+|+.|.+.++...
T Consensus 702 ~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 702 EGCSK-RTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred ccccc-ceeecccccccCcceEEEEcCCCc
Confidence 22111 233445666777777777777664
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=4.3e-10 Score=73.32 Aligned_cols=61 Identities=38% Similarity=0.435 Sum_probs=44.1
Q ss_pred CCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcC
Q 036666 265 SELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDL 325 (350)
Q Consensus 265 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 325 (350)
|+|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777755556777777777777777777766667777777777777777754
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=5.3e-11 Score=99.04 Aligned_cols=129 Identities=29% Similarity=0.336 Sum_probs=64.7
Q ss_pred CCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEec
Q 036666 120 THLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRI 199 (350)
Q Consensus 120 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 199 (350)
+.|++++|++|.|+ .+..+..-.|.++.|+++.|.+... ..+..+++|++||+++|.++. +...-..+-+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 34555555555555 3334444455555555555555522 225555555566665555442 2222223445555555
Q ss_pred cCCCCCcccCChhhcCCCCcCeeecccccCcCC-CCccccCCCcCceEeeccccccc
Q 036666 200 GGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGV-IPPTFGNLINLQTLALYDTEVFG 255 (350)
Q Consensus 200 ~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~ 255 (350)
.+|.+ +..+.+.++-+|..|++++|++... --..+++++.|+++.+.+|.+.+
T Consensus 360 a~N~i---E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKI---ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhH---hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 55541 1122344445555666666655432 11345666666666666666643
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=2e-10 Score=105.29 Aligned_cols=195 Identities=30% Similarity=0.334 Sum_probs=97.1
Q ss_pred CCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEE
Q 036666 95 LSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLC 174 (350)
Q Consensus 95 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 174 (350)
+..++.+.+..|.+.. ....+..+.+|+.+++.+|.+..+ ...+..+++|++|++++|.++.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3444455555555552 222355566666666666666532 22245566666666666666633 2244555566666
Q ss_pred cccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCC-hhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeeccccc
Q 036666 175 LQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIP-TQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEV 253 (350)
Q Consensus 175 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 253 (350)
+.+|.+... ..+..++.|+.+++++|. +..... . ...+.+++.+++.+|.+...- .+..+..+..+++..|.+
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 666666521 233345666666666665 222211 1 355666666666666554321 122223333334444444
Q ss_pred ccCCcccccCCCC--CCeEEccCCcCcccCChhhhCCCCCCEEeccCccCc
Q 036666 254 FGSIPPEIGLCSE--LRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLS 302 (350)
Q Consensus 254 ~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 302 (350)
...-+ +..... |+.+++++|++. ..+..+..+..+..+++.+|++.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 22211 111122 555666666655 22233445555666666665554
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=3.8e-10 Score=93.84 Aligned_cols=202 Identities=19% Similarity=0.149 Sum_probs=117.5
Q ss_pred CCCCCEEEccCCCCCC--CCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcC
Q 036666 143 LSLLQFLFLNTNRLSG--SIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLT 220 (350)
Q Consensus 143 l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~ 220 (350)
...++++||.+|.++. ++...+.++|.|++|+++.|.+...+...-....+|+.|-+.+..+.....-..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666666666551 33334556677777777776665444333234556777777666633333444566677777
Q ss_pred eeecccccCcCCC--CccccCC-CcCceEeecccccccCC--cccccCCCCCCeEEccCCcCccc-CChhhhCCCCCCEE
Q 036666 221 TFGAAATGLSGVI--PPTFGNL-INLQTLALYDTEVFGSI--PPEIGLCSELRNLYLHMNKLTGS-IPSELGKLQKLTSL 294 (350)
Q Consensus 221 ~L~l~~~~~~~~~--~~~l~~~-~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L 294 (350)
+|+++.|...... ....... +.+++++...|...... ...-.-+|++..+.+..|.+.+. -......+|.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 7777777432110 1111111 23444444444221100 01112357788888888877642 23345677888899
Q ss_pred eccCccCccc-CCccCcCCCCCCEEEccCCcCcccCC----c--cccCCCCCCEEeC
Q 036666 295 LLWGNTLSGP-IPAELSNCSALVVLDASANDLSGELP----G--DLGKLVLLEQLHL 344 (350)
Q Consensus 295 ~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~----~--~~~~l~~L~~L~l 344 (350)
+|+.+++.+. --+++.+++.|..|.++++.+.+.+. . -++.++++++|+=
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 9999998753 33567789999999999998765432 1 2567788888763
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=3.5e-10 Score=103.70 Aligned_cols=197 Identities=29% Similarity=0.341 Sum_probs=144.5
Q ss_pred CCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCE
Q 036666 117 GQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQ 196 (350)
Q Consensus 117 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 196 (350)
..+..++.++++.|.+.. +-..+..+++|+.+++.+|.+... ...+..+++|++|++++|.+... ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 456778888888888874 334477889999999999999843 33377899999999999998743 24556777999
Q ss_pred EeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCC-ccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCC
Q 036666 197 FRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIP-PTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMN 275 (350)
Q Consensus 197 L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 275 (350)
|++.+|.+ .. ...+..+++|+.+++++|.+...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|
T Consensus 145 L~l~~N~i-~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 145 LNLSGNLI-SD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred heeccCcc-hh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence 99999983 22 2234458899999999999886544 2 57788999999999987443 23444455666688888
Q ss_pred cCcccCChhhhCCC--CCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 276 KLTGSIPSELGKLQ--KLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 276 ~l~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
.++..-+ +..+. +|+.+.+++|.+. ..++.+..+..+..+++.+|++.
T Consensus 219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 219 KISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 8873321 22233 3899999999998 33355667788888888888765
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.9e-10 Score=94.60 Aligned_cols=177 Identities=21% Similarity=0.137 Sum_probs=98.4
Q ss_pred CCCEEEccCCCCCCC-CCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccC-ChhhcCCCCcCee
Q 036666 145 LLQFLFLNTNRLSGS-IPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEI-PTQLGMLTNLTTF 222 (350)
Q Consensus 145 ~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~l~~~~~L~~L 222 (350)
+|++|||++..++.. +-..+..+.+|+.|.+.++++...+...++.-.+|+.++++.+.-++... ...+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777666521 22234566777777777777766555666666777777777654333222 2345667777777
Q ss_pred ecccccCcCCCC-ccccC-CCcCceEeecccccc--cCCcc-cccCCCCCCeEEccCCc-CcccCChhhhCCCCCCEEec
Q 036666 223 GAAATGLSGVIP-PTFGN-LINLQTLALYDTEVF--GSIPP-EIGLCSELRNLYLHMNK-LTGSIPSELGKLQKLTSLLL 296 (350)
Q Consensus 223 ~l~~~~~~~~~~-~~l~~-~~~L~~L~l~~~~~~--~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l 296 (350)
+++.|..+...- ..+.+ -+.|..|+++|+.-. ...-. -...+|+|.+||+++|. ++...-..+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777776543221 11111 245666777665321 01001 12456777777777653 33222334556677777777
Q ss_pred cCccCcccCCc---cCcCCCCCCEEEccCC
Q 036666 297 WGNTLSGPIPA---ELSNCSALVVLDASAN 323 (350)
Q Consensus 297 ~~n~~~~~~~~---~~~~~~~L~~L~l~~n 323 (350)
+.|..- +|. .+...|+|.+|++.++
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 766542 222 2345667777776655
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=6.3e-10 Score=102.89 Aligned_cols=126 Identities=25% Similarity=0.182 Sum_probs=65.7
Q ss_pred CcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEecc
Q 036666 218 NLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLW 297 (350)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 297 (350)
+|.+.++++|.+. .....+.-++.++.|++++|++... +.+..+++|++||+++|.+....--...++. |+.|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4444555555544 2233444455666666666665433 2455566666666666666622222223332 6666666
Q ss_pred CccCcccCCccCcCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEeCcCCCC
Q 036666 298 GNTLSGPIPAELSNCSALVVLDASANDLSGELP-GDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 298 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l 349 (350)
+|.++.. ..+.++.+|+.||+++|-+.+.-. .-+..+..|+.|+|.||++
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6666522 224456666666666665543211 1123345666666666664
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.8e-10 Score=94.70 Aligned_cols=221 Identities=22% Similarity=0.191 Sum_probs=150.9
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCC-CCCCEEECCCCcCCcC-CCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSL-SSLQLLNLSSTNISGI-IPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQF 148 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 148 (350)
..|..+++.........+.+.+.-+ ..+++|||++..++.. ....++.+.+|+.|.|.++++.+.+...++.-..|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 3677777776555433344444333 4699999999988743 3334577999999999999999888788888999999
Q ss_pred EEccCCC-CCCCC-CccCCCCCCCCEEEcccCcCCCCCCcc-CC-CCCCCCEEeccCCCC-Cc-ccCChhhcCCCCcCee
Q 036666 149 LFLNTNR-LSGSI-PPQLANLTSLQVLCLQDNLLNGSIPSQ-LG-SLVSLQQFRIGGNPY-LT-GEIPTQLGMLTNLTTF 222 (350)
Q Consensus 149 L~L~~n~-~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~-~l~~L~~L~l~~n~~-~~-~~~~~~l~~~~~L~~L 222 (350)
|+++.+. ++... .-.+.++..|..|+++.|......... +. --++|+.|+++++.. +. ..+......+++|..|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 9999864 33211 123578899999999999865332221 11 236788999988642 11 1233345679999999
Q ss_pred eccccc-CcCCCCccccCCCcCceEeecccccccCCccc---ccCCCCCCeEEccCCcCcccCChhhhCCCCCCE
Q 036666 223 GAAATG-LSGVIPPTFGNLINLQTLALYDTEVFGSIPPE---IGLCSELRNLYLHMNKLTGSIPSELGKLQKLTS 293 (350)
Q Consensus 223 ~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 293 (350)
+++.+. ++......|.+++.|++|.++.|.. .+|.. +...|.|.+|++.++--.+...-....+++|+.
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 999874 4444455677899999999998863 45543 567799999999877544332222344565554
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.3e-08 Score=83.50 Aligned_cols=85 Identities=33% Similarity=0.347 Sum_probs=43.1
Q ss_pred CCCCCEEECCCCcCCc--CCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCC-CCccCCCCCCCC
Q 036666 95 LSSLQLLNLSSTNISG--IIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGS-IPPQLANLTSLQ 171 (350)
Q Consensus 95 ~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~ 171 (350)
+.+++++||.+|.++. .+...+.++|.|++|+|+.|++...+...-....+|+.|.|.++.+... ....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666666666552 1223345566666666666665532221112344566666665554421 222345556666
Q ss_pred EEEcccCc
Q 036666 172 VLCLQDNL 179 (350)
Q Consensus 172 ~L~l~~n~ 179 (350)
.++++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 66666553
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.37 E-value=3.2e-08 Score=81.58 Aligned_cols=136 Identities=19% Similarity=0.069 Sum_probs=60.7
Q ss_pred CCCCCEEeccCCCCCcccC---ChhhcCCCCcCeeecccccCcCCC-----CccccCCCcCceEeecccccccCCc----
Q 036666 191 LVSLQQFRIGGNPYLTGEI---PTQLGMLTNLTTFGAAATGLSGVI-----PPTFGNLINLQTLALYDTEVFGSIP---- 258 (350)
Q Consensus 191 l~~L~~L~l~~n~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~---- 258 (350)
-|.|+.+....|++..+.. ...+..-.+|+.+.+..|.|.... .-.+..+.+|+.|++++|.++..-.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 3455555555554221111 112233345555555555554221 0112234556666666665543221
Q ss_pred ccccCCCCCCeEEccCCcCcccCChhh------hCCCCCCEEeccCccCcccCCcc-------CcCCCCCCEEEccCCcC
Q 036666 259 PEIGLCSELRNLYLHMNKLTGSIPSEL------GKLQKLTSLLLWGNTLSGPIPAE-------LSNCSALVVLDASANDL 325 (350)
Q Consensus 259 ~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~~~~L~~L~l~~n~~~~~~~~~-------~~~~~~L~~L~l~~n~l 325 (350)
..++..+.|+.|.+..|-++......+ -..|+|..|...+|.+.+..-.. -..+|-|..|.+.+|++
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 223334456666666665543222111 12456666666666554321111 12345555566666655
Q ss_pred c
Q 036666 326 S 326 (350)
Q Consensus 326 ~ 326 (350)
.
T Consensus 316 ~ 316 (388)
T COG5238 316 K 316 (388)
T ss_pred h
Confidence 4
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.34 E-value=2.6e-08 Score=82.14 Aligned_cols=246 Identities=19% Similarity=0.162 Sum_probs=145.1
Q ss_pred CCCCCCCEEECCCCcCCcC----CCcCCCCCCCCCeEeCCCCCCC---CCCCc-------ccCCCCCCCEEEccCCCCCC
Q 036666 93 SSLSSLQLLNLSSTNISGI----IPPSFGQLTHLRLLDLSSNSLS---GPIPE-------ELGQLSLLQFLFLNTNRLSG 158 (350)
Q Consensus 93 ~~~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~~~~~---~~~~~-------~~~~l~~L~~L~L~~n~~~~ 158 (350)
..+..++.++|++|.|... +...+.+-.+|+..++++-... +.+++ ++.+||+|+..+|++|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3456778888888887643 3344555677777777764322 12222 23466777777777776664
Q ss_pred CCCcc----CCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCC
Q 036666 159 SIPPQ----LANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIP 234 (350)
Q Consensus 159 ~~~~~----l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 234 (350)
..|.- ++....|.+|.+++|.+....-.-++ +.|.+ +..|+ ....-|.|+...+..|++..-..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~--la~nK--------Kaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFH--LAYNK--------KAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHH--HHHHh--------hhccCCCceEEEeccchhccCcH
Confidence 44432 23345555555555544311100000 00111 11111 22345789999999998864322
Q ss_pred c----cccCCCcCceEeecccccccCCc-----ccccCCCCCCeEEccCCcCccc----CChhhhCCCCCCEEeccCccC
Q 036666 235 P----TFGNLINLQTLALYDTEVFGSIP-----PEIGLCSELRNLYLHMNKLTGS----IPSELGKLQKLTSLLLWGNTL 301 (350)
Q Consensus 235 ~----~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~ 301 (350)
. .+..-..|+.+.+..|.+...-. ..+..+.+|+.|++..|.++-. +...+...+.|+.|++..|-+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 1 22223589999999997754311 1235678999999999998732 233455677899999999988
Q ss_pred cccCCccC------cCCCCCCEEEccCCcCcccCCcc-----c--cCCCCCCEEeCcCCCCC
Q 036666 302 SGPIPAEL------SNCSALVVLDASANDLSGELPGD-----L--GKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 302 ~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~-----~--~~l~~L~~L~l~~n~l~ 350 (350)
+.....++ ...|+|..|-..+|...+.+-.. + ..+|-|..+.+.||.++
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 75433322 13688999999999765433221 1 24577777777777763
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=7.8e-08 Score=89.44 Aligned_cols=156 Identities=25% Similarity=0.237 Sum_probs=102.9
Q ss_pred CccCCCCCCCCEEeccCCCCCcccCChhhcCC-CCcCeeeccccc--Cc-------CCCCccccCCCcCceEeecccccc
Q 036666 185 PSQLGSLVSLQQFRIGGNPYLTGEIPTQLGML-TNLTTFGAAATG--LS-------GVIPPTFGNLINLQTLALYDTEVF 254 (350)
Q Consensus 185 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~-~~L~~L~l~~~~--~~-------~~~~~~l~~~~~L~~L~l~~~~~~ 254 (350)
|-.+..+.+|++|.++++.+ .. ...+..+ ..|++|.....- +. +.+... ..+..|...+.+.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L-~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L- 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDL-ST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRL- 176 (1096)
T ss_pred CceeccccceeeEEecCcch-hh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhH-
Confidence 44556677899999988873 21 1111111 123333222210 00 111111 1245678888888887
Q ss_pred cCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCcccc
Q 036666 255 GSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLG 334 (350)
Q Consensus 255 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 334 (350)
..+..++.-++.++.|++++|+++.. ..+..+++|++|||++|.+. .+|..-..-..|..|.++||.++... .+.
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~--gie 251 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLR--GIE 251 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhh--hHH
Confidence 34556677789999999999999954 37889999999999999998 44443222234999999999887432 578
Q ss_pred CCCCCCEEeCcCCCCC
Q 036666 335 KLVLLEQLHLSDNMLT 350 (350)
Q Consensus 335 ~l~~L~~L~l~~n~l~ 350 (350)
++.+|+.||+++|-|+
T Consensus 252 ~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLS 267 (1096)
T ss_pred hhhhhhccchhHhhhh
Confidence 9999999999999763
No 51
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.25 E-value=1.4e-06 Score=51.88 Aligned_cols=41 Identities=46% Similarity=0.956 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-CCCCCcCceeeC
Q 036666 25 SPDGEALLSLISAAGPSAKASSSILSSWNPSN-LTPCSWQGITCS 68 (350)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~-~~~c~~~~~~c~ 68 (350)
.+|.++|+.||..+.. ++...+.+|.... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~---~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNN---DPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT----SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhccc---ccCcccccCCCcCCCCCeeeccEEeC
Confidence 4789999999999983 3567899999664 899999999995
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.2e-06 Score=52.39 Aligned_cols=37 Identities=38% Similarity=0.495 Sum_probs=25.9
Q ss_pred CCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 289 QKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 289 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46778888888887 44555777888888888888777
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=5.7e-08 Score=71.87 Aligned_cols=106 Identities=21% Similarity=0.169 Sum_probs=56.5
Q ss_pred cCeeecccccCcCC--CCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEec
Q 036666 219 LTTFGAAATGLSGV--IPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLL 296 (350)
Q Consensus 219 L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 296 (350)
+..+++++|.+-.. .+..+.....|...++++|.+....+..-..++.++.|++++|+++ .+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 34455555544311 1112333445555666666664333332234456666666666666 45555666666666666
Q ss_pred cCccCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 297 WGNTLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 297 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
+.|.+. ..|+.+..+.++-.|+..+|...
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 666665 44454555566666666666554
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.14 E-value=2e-08 Score=87.43 Aligned_cols=278 Identities=19% Similarity=0.114 Sum_probs=154.0
Q ss_pred CCEEEEEcCCCCCC-CCCCCccCCCCCCCCEEECCCCc-CCcCCCcCC-CCCCCCCeEeCCCCC-CCCCCCc-ccCCCCC
Q 036666 71 NRVISLSLPDTFLN-LSALPPQLSSLSSLQLLNLSSTN-ISGIIPPSF-GQLTHLRLLDLSSNS-LSGPIPE-ELGQLSL 145 (350)
Q Consensus 71 ~~v~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~L~~~~-~~~~~~~-~~~~l~~ 145 (350)
++++++++.++.-. ...+.....++|+++.|.+.++. ++...-..+ ..+++|+.+++..|. ++...-. -..++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 56778888776543 22333355678888888888775 332222222 457888888888853 3322222 2346888
Q ss_pred CCEEEccCCC-CCCC-CCccCCCCCCCCEEEcccCcCCCC--CCccCCCCCCCCEEeccCCCCCcccCC-hhhcCCCCcC
Q 036666 146 LQFLFLNTNR-LSGS-IPPQLANLTSLQVLCLQDNLLNGS--IPSQLGSLVSLQQFRIGGNPYLTGEIP-TQLGMLTNLT 220 (350)
Q Consensus 146 L~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~l~~~~~L~ 220 (350)
|++|+++.+. +++. +.....+...++.+.+.+|.-.+. +...-.....+..+++..|..+++... ..--.+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888774 2221 112234455566665555432110 001112233445555555543333321 1223456777
Q ss_pred eeecccccCcCC-CCccc-cCCCcCceEeecccccccCCc-ccc-cCCCCCCeEEccCCcCcc--cCChhhhCCCCCCEE
Q 036666 221 TFGAAATGLSGV-IPPTF-GNLINLQTLALYDTEVFGSIP-PEI-GLCSELRNLYLHMNKLTG--SIPSELGKLQKLTSL 294 (350)
Q Consensus 221 ~L~l~~~~~~~~-~~~~l-~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L 294 (350)
.|+.+++...+. .-..+ .+..+|+.+.+++++..+..- ..+ .+++.|+.+++..+.... .+...-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 777776654221 11122 356778888888776432211 112 356788888888776542 222233467888888
Q ss_pred eccCccCc-cc----CCccCcCCCCCCEEEccCCcC-cccCCccccCCCCCCEEeCcCCC
Q 036666 295 LLWGNTLS-GP----IPAELSNCSALVVLDASANDL-SGELPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 295 ~l~~n~~~-~~----~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~ 348 (350)
.++++... +. +...-..+..|+.+.++++.. ++..-..+..+++|+.+++.+++
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 88877543 22 112223466788888888854 44444566677888888877664
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=1.6e-07 Score=69.54 Aligned_cols=117 Identities=23% Similarity=0.237 Sum_probs=79.5
Q ss_pred hhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCC
Q 036666 212 QLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKL 291 (350)
Q Consensus 212 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 291 (350)
.+.....|+..++++|.+....+..-.+.+.+..+++.+|.+ ..+|..++.++.|+.|+++.|.+. ..|..+..+.++
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 344555666677777777654444445566788888888887 455666888888899999988888 667777778888
Q ss_pred CEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCc
Q 036666 292 TSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPG 331 (350)
Q Consensus 292 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 331 (350)
..|+..+|.+. .++..+..-...-..++.++.+.+.-+.
T Consensus 126 ~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 126 DMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred HHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 88888888877 4444433322333345566666665544
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=1.4e-06 Score=83.91 Aligned_cols=152 Identities=22% Similarity=0.194 Sum_probs=92.9
Q ss_pred CCCCEEEcccCcCC-CCCCcc-CCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCce
Q 036666 168 TSLQVLCLQDNLLN-GSIPSQ-LGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQT 245 (350)
Q Consensus 168 ~~L~~L~l~~n~~~-~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 245 (350)
.+|++|++++...- ...+.. -..+|+|+.|.+.+-....+++.....++|+|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666553321 111222 224677777777775544555666677888888888888887754 56777888888
Q ss_pred Eeeccccccc-CCcccccCCCCCCeEEccCCcCcccC------ChhhhCCCCCCEEeccCccCcccCCccC-cCCCCCCE
Q 036666 246 LALYDTEVFG-SIPPEIGLCSELRNLYLHMNKLTGSI------PSELGKLQKLTSLLLWGNTLSGPIPAEL-SNCSALVV 317 (350)
Q Consensus 246 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~ 317 (350)
|.+.+-.+.. ..-..+-++++|+.||+|........ -+.-..+|+|+.||.|+..+.+..-+.+ ...|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8877766543 11234556888888888877655221 1122357888888888887765433322 23455555
Q ss_pred EEcc
Q 036666 318 LDAS 321 (350)
Q Consensus 318 L~l~ 321 (350)
+-.-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5443
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.6e-06 Score=49.45 Aligned_cols=38 Identities=37% Similarity=0.535 Sum_probs=26.4
Q ss_pred CCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcc
Q 036666 265 SELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSG 303 (350)
Q Consensus 265 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 303 (350)
++|++|++++|+++ .+|..+.++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 36777788888777 455567778888888888887763
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=1.5e-05 Score=63.31 Aligned_cols=82 Identities=29% Similarity=0.378 Sum_probs=43.1
Q ss_pred CCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCC-CccCCCCCCCCEEe
Q 036666 120 THLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSI-PSQLGSLVSLQQFR 198 (350)
Q Consensus 120 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~ 198 (350)
.....++|++|.+... +.|.++++|..|.+.+|.++...|.--..+++|+.|.+.+|.+.... -.-+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3455666666665421 23556666666666666666444443334456666666666654211 11233445555555
Q ss_pred ccCCC
Q 036666 199 IGGNP 203 (350)
Q Consensus 199 l~~n~ 203 (350)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 55544
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=4.3e-05 Score=68.40 Aligned_cols=138 Identities=15% Similarity=0.234 Sum_probs=83.6
Q ss_pred cCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCc
Q 036666 140 LGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNL 219 (350)
Q Consensus 140 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L 219 (350)
+..+.++++|++++|.++ .+|. -.++|+.|.++++.-...+|..+ .++|++|.+++|..+. .+| +.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence 445788999999999877 4552 22469999998865434555543 2579999998884222 222 357
Q ss_pred CeeecccccCcCCCCccccCC-CcCceEeecccccc--cCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEec
Q 036666 220 TTFGAAATGLSGVIPPTFGNL-INLQTLALYDTEVF--GSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLL 296 (350)
Q Consensus 220 ~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 296 (350)
+.|++..+.... +..+ ++|+.|.+.+++.. ...+..+ .++|++|++++|... ..|..+. .+|+.|.+
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 777776554321 1222 35667776543211 1111111 257888888888765 4444332 58888888
Q ss_pred cCcc
Q 036666 297 WGNT 300 (350)
Q Consensus 297 ~~n~ 300 (350)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7663
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.8e-05 Score=61.71 Aligned_cols=103 Identities=22% Similarity=0.226 Sum_probs=56.7
Q ss_pred cCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCccc-CCccCcCCCCCCEEEc
Q 036666 242 NLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGP-IPAELSNCSALVVLDA 320 (350)
Q Consensus 242 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l 320 (350)
+...+++++|.+... +.|.++++|.+|.+++|.++..-|..-.-+|+|+.|.+.+|.+... -.+-+..+|.|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344556666655221 3355666666666666666654444444456666676666666421 0112345666777766
Q ss_pred cCCcCcccC---CccccCCCCCCEEeCcC
Q 036666 321 SANDLSGEL---PGDLGKLVLLEQLHLSD 346 (350)
Q Consensus 321 ~~n~l~~~~---~~~~~~l~~L~~L~l~~ 346 (350)
-+|.++..- --.+..+|+|+.||+++
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 666665321 12345667777776653
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=5.1e-06 Score=80.17 Aligned_cols=135 Identities=20% Similarity=0.234 Sum_probs=92.7
Q ss_pred CCCCEEeccCCCCCcccCChhhc-CCCCcCeeecccccCcCC-CCccccCCCcCceEeecccccccCCcccccCCCCCCe
Q 036666 192 VSLQQFRIGGNPYLTGEIPTQLG-MLTNLTTFGAAATGLSGV-IPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRN 269 (350)
Q Consensus 192 ~~L~~L~l~~n~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 269 (350)
.+|++|++++...+....+..++ .+|.|+.|.+.+-.+... +.....++++|..||++++++... ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 47889999887644444444443 578999999988766432 334456788899999999887544 56778888888
Q ss_pred EEccCCcCcc-cCChhhhCCCCCCEEeccCccCcccC------CccCcCCCCCCEEEccCCcCccc
Q 036666 270 LYLHMNKLTG-SIPSELGKLQKLTSLLLWGNTLSGPI------PAELSNCSALVVLDASANDLSGE 328 (350)
Q Consensus 270 L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~------~~~~~~~~~L~~L~l~~n~l~~~ 328 (350)
|.+.+=.+.. ..-..+-.+++|+.||+|........ -+....+|+|+.||.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8888777663 11234557889999999877654221 12223478889999888877654
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.82 E-value=6.8e-05 Score=56.78 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=43.9
Q ss_pred cCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCE
Q 036666 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTS 293 (350)
Q Consensus 214 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 293 (350)
.++++|+.+.+.. .+.......|..+..|+.+.+.++ +.......|.++++++.+.+.. .+.......+..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3344444444432 233233334555555555555543 3333334455555566666644 322233344555666666
Q ss_pred EeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 036666 294 LLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLL 339 (350)
Q Consensus 294 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 339 (350)
+++..+ +.......|.++ .++.+.+.. .+......+|.++++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666543 333334445554 666666654 3333444456555555
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.0001 Score=66.06 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=50.1
Q ss_pred CCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCC
Q 036666 189 GSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELR 268 (350)
Q Consensus 189 ~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 268 (350)
..+.+++.|++++|. +.. +| .-.++|++|.+++|.--..+|..+ .++|++|.+++|.....+| ++|+
T Consensus 49 ~~~~~l~~L~Is~c~-L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCD-IES-LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCC-Ccc-cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 346789999999885 332 23 123479999999875545566555 3689999999884334444 3466
Q ss_pred eEEccCCcC
Q 036666 269 NLYLHMNKL 277 (350)
Q Consensus 269 ~L~l~~n~l 277 (350)
.|++..+..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 777765543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.75 E-value=0.00013 Score=55.28 Aligned_cols=121 Identities=14% Similarity=0.207 Sum_probs=44.9
Q ss_pred CCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCC
Q 036666 188 LGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSEL 267 (350)
Q Consensus 188 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 267 (350)
|..+.+|+.+.+..+ ........+.++++|+.+.+..+ +.......+.+++.++.+.+.. .........|..++++
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 334444444444321 22222333444445555555442 3333334455555566666654 3323333445566677
Q ss_pred CeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCC
Q 036666 268 RNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSAL 315 (350)
Q Consensus 268 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 315 (350)
+.+++..+ +.......+.++ +|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77766554 332334455565 677776655 3333444556555555
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.63 E-value=2.1e-05 Score=64.92 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCC--CCCCCCCcccCCCCCCCEEEccCCCCCCCCCcc--
Q 036666 88 LPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSN--SLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQ-- 163 (350)
Q Consensus 88 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~--~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-- 163 (350)
+......+..|+.|++.+..++.. ..|..+++|++|.++.| ++.+.++.....+|+|+++++++|++.. ++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 444444556677777777766532 23666788888888888 5554444444566888888888887762 222
Q ss_pred -CCCCCCCCEEEcccCcCCCCCC---ccCCCCCCCCEEec
Q 036666 164 -LANLTSLQVLCLQDNLLNGSIP---SQLGSLVSLQQFRI 199 (350)
Q Consensus 164 -l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l 199 (350)
+..+.+|..|+++.|..+..-. ..|.-+++|++|+-
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 3455667777777766543111 12334555555553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.43 E-value=8.2e-05 Score=61.55 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=26.2
Q ss_pred CCCcCeeecccccCcCCCCccccCCCcCceEeeccc--ccccCCcccccCCCCCCeEEccCCcCc
Q 036666 216 LTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDT--EVFGSIPPEIGLCSELRNLYLHMNKLT 278 (350)
Q Consensus 216 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~ 278 (350)
+.+|+.|.+.+..++.. ..+..+++|+.|.++.| +..+.++.....+|+|++++++.|++.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33444444444443321 12334445555555555 333333322333455555555555444
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.32 E-value=1.9e-05 Score=74.20 Aligned_cols=111 Identities=18% Similarity=0.039 Sum_probs=48.5
Q ss_pred CCCCCeEeCCCCCCCCC--CCcccCCCCCCCEEEccCC-CCCCCCC----ccCCCCCCCCEEEcccCc-CCCCCCccCC-
Q 036666 119 LTHLRLLDLSSNSLSGP--IPEELGQLSLLQFLFLNTN-RLSGSIP----PQLANLTSLQVLCLQDNL-LNGSIPSQLG- 189 (350)
Q Consensus 119 l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~~n-~~~~~~~----~~l~~l~~L~~L~l~~n~-~~~~~~~~~~- 189 (350)
++.|+.+.+.++.-... .-.....++.|+.|+++++ ......+ .....+++|+.++++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555532211 1122345566666666542 1111111 112334556666666555 3222111111
Q ss_pred CCCCCCEEeccCCCCCcc-cCChhhcCCCCcCeeecccccC
Q 036666 190 SLVSLQQFRIGGNPYLTG-EIPTQLGMLTNLTTFGAAATGL 229 (350)
Q Consensus 190 ~l~~L~~L~l~~n~~~~~-~~~~~l~~~~~L~~L~l~~~~~ 229 (350)
.+++|+.|.+.++..+++ .+......+++|++|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 255666666555542222 2233344455666666665543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=2.9e-05 Score=64.69 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=42.7
Q ss_pred CCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCC-CccCCCCCCCCEEe
Q 036666 120 THLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSI-PSQLGSLVSLQQFR 198 (350)
Q Consensus 120 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~ 198 (350)
.+.+.|++-+|.+.++. ....|+.|++|.|+-|+++..- .+..+++|++|+|..|.+.... ...+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34555666666665321 2345666666666666666321 2455666666666666554210 12244555566665
Q ss_pred ccCCC
Q 036666 199 IGGNP 203 (350)
Q Consensus 199 l~~n~ 203 (350)
|..|+
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 55554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.0001 Score=69.13 Aligned_cols=131 Identities=20% Similarity=0.149 Sum_probs=72.4
Q ss_pred CCCCCCEEEccCCCCCCC--CCccCCCCCCCCEEEcccC-cCCCC----CCccCCCCCCCCEEeccCCCCCcccCChhhc
Q 036666 142 QLSLLQFLFLNTNRLSGS--IPPQLANLTSLQVLCLQDN-LLNGS----IPSQLGSLVSLQQFRIGGNPYLTGEIPTQLG 214 (350)
Q Consensus 142 ~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~ 214 (350)
.++.|+.+.+.++.-... ........++|+.|+++++ ..... .......+++|+.+++..+..+++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367788888777644322 2234456788888888763 11111 1123445577888888776633433333333
Q ss_pred -CCCCcCeeeccccc-CcCCCCcc-ccCCCcCceEeecccccccC--CcccccCCCCCCeEEc
Q 036666 215 -MLTNLTTFGAAATG-LSGVIPPT-FGNLINLQTLALYDTEVFGS--IPPEIGLCSELRNLYL 272 (350)
Q Consensus 215 -~~~~L~~L~l~~~~-~~~~~~~~-l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l 272 (350)
.+++|+.|.+..+. ++...-.. ...++.|++|+++++..... +.....++++++.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 37788888877666 44332222 34567788888887755311 1122334555555443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=4.3e-05 Score=63.74 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=40.5
Q ss_pred CCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCC--hhhhCCCCCCEE
Q 036666 217 TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIP--SELGKLQKLTSL 294 (350)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L 294 (350)
.+.+.|++.+|+++.+ ....+++.|+.|.|+-|+++.. ..+..|.+|++|++..|.|.+ +. .-+.++|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 3445556666555432 1233455566666665555332 224455566666666555542 11 123345555555
Q ss_pred eccCccCcc
Q 036666 295 LLWGNTLSG 303 (350)
Q Consensus 295 ~l~~n~~~~ 303 (350)
.|..|.-.+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 555554443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.0029 Score=31.32 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=10.2
Q ss_pred CCEEEccCCcCcccCCcccc
Q 036666 315 LVVLDASANDLSGELPGDLG 334 (350)
Q Consensus 315 L~~L~l~~n~l~~~~~~~~~ 334 (350)
|++|++++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455666666555 4444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.98 E-value=0.0092 Score=29.49 Aligned_cols=12 Identities=50% Similarity=0.531 Sum_probs=6.4
Q ss_pred CCEEeccCccCc
Q 036666 291 LTSLLLWGNTLS 302 (350)
Q Consensus 291 L~~L~l~~n~~~ 302 (350)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.25 E-value=0.00023 Score=65.97 Aligned_cols=182 Identities=29% Similarity=0.282 Sum_probs=100.3
Q ss_pred CCCEEEccCCCCCCCCC----ccCCCCCCCCEEEcccCcCCCCCC----ccCCCC-CCCCEEeccCCCCCccc----CCh
Q 036666 145 LLQFLFLNTNRLSGSIP----PQLANLTSLQVLCLQDNLLNGSIP----SQLGSL-VSLQQFRIGGNPYLTGE----IPT 211 (350)
Q Consensus 145 ~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~----~~~~~l-~~L~~L~l~~n~~~~~~----~~~ 211 (350)
.+..+.|.+|.+..... ..+...+.|+.|++++|.+..... ..+... ..+++|++..|. .+.. +..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAA 166 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHH
Confidence 37888888888875433 345667888899999988763211 122222 456667776665 3332 334
Q ss_pred hhcCCCCcCeeecccccCcC----CCCcccc----CCCcCceEeecccccccCC----cccccCCCC-CCeEEccCCcCc
Q 036666 212 QLGMLTNLTTFGAAATGLSG----VIPPTFG----NLINLQTLALYDTEVFGSI----PPEIGLCSE-LRNLYLHMNKLT 278 (350)
Q Consensus 212 ~l~~~~~L~~L~l~~~~~~~----~~~~~l~----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~n~l~ 278 (350)
.+.....++.++++.|.+.. .++..+. ....+++|.+..|.++... ...+...+. +..|++..|++.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 45556777778887776632 1222222 3556667777666654211 112233333 455666666665
Q ss_pred cc----CChhhhCC-CCCCEEeccCccCccc----CCccCcCCCCCCEEEccCCcCcc
Q 036666 279 GS----IPSELGKL-QKLTSLLLWGNTLSGP----IPAELSNCSALVVLDASANDLSG 327 (350)
Q Consensus 279 ~~----~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~ 327 (350)
+. ....+..+ +.++.++++.|.+++. +...+..++.++.+.+++|.+.+
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 32 12223333 4556666666666543 22333345566666666666553
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.68 E-value=0.044 Score=25.09 Aligned_cols=12 Identities=50% Similarity=0.564 Sum_probs=5.4
Q ss_pred CCCEEeCcCCCC
Q 036666 338 LLEQLHLSDNML 349 (350)
Q Consensus 338 ~L~~L~l~~n~l 349 (350)
+|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 456666666655
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=0.0071 Score=48.42 Aligned_cols=81 Identities=17% Similarity=0.061 Sum_probs=40.3
Q ss_pred CceEeecccccccCCcccccCCCCCCeEEccCCcCcc-cCChhh-hCCCCCCEEeccCc-cCcccCCccCcCCCCCCEEE
Q 036666 243 LQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTG-SIPSEL-GKLQKLTSLLLWGN-TLSGPIPAELSNCSALVVLD 319 (350)
Q Consensus 243 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~ 319 (350)
++.++-+++.+..+--+.+.+++.++.|.+.+|.--+ ..-+-+ +..++|+.|++++| +|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4555555555544444445555666666665554221 100111 13356666666655 45544444555566666665
Q ss_pred ccCC
Q 036666 320 ASAN 323 (350)
Q Consensus 320 l~~n 323 (350)
|.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 5543
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.48 E-value=0.00034 Score=64.89 Aligned_cols=203 Identities=22% Similarity=0.167 Sum_probs=133.6
Q ss_pred CCeEeCCCCCCCCCCC----cccCCCCCCCEEEccCCCCCCCCCc----cCCCC-CCCCEEEcccCcCCCC----CCccC
Q 036666 122 LRLLDLSSNSLSGPIP----EELGQLSLLQFLFLNTNRLSGSIPP----QLANL-TSLQVLCLQDNLLNGS----IPSQL 188 (350)
Q Consensus 122 L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~----~l~~l-~~L~~L~l~~n~~~~~----~~~~~ 188 (350)
+..+.+.+|.+..... ..+...+.|+.|++++|.+.+.... .+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7888899998875433 2456789999999999998843222 22232 5577788888877642 34455
Q ss_pred CCCCCCCEEeccCCCCCcc---cCChhhc----CCCCcCeeecccccCcCCC----CccccCCCc-CceEeecccccccC
Q 036666 189 GSLVSLQQFRIGGNPYLTG---EIPTQLG----MLTNLTTFGAAATGLSGVI----PPTFGNLIN-LQTLALYDTEVFGS 256 (350)
Q Consensus 189 ~~l~~L~~L~l~~n~~~~~---~~~~~l~----~~~~L~~L~l~~~~~~~~~----~~~l~~~~~-L~~L~l~~~~~~~~ 256 (350)
.....++.++++.|..... .++..+. ...++++|.+.+|.++... ...+...+. +..+++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5678899999998874321 1233333 4778999999999887432 233444455 77799998887543
Q ss_pred C----cccccCC-CCCCeEEccCCcCcccC----ChhhhCCCCCCEEeccCccCcccC----CccCcCCCCCCEEEccCC
Q 036666 257 I----PPEIGLC-SELRNLYLHMNKLTGSI----PSELGKLQKLTSLLLWGNTLSGPI----PAELSNCSALVVLDASAN 323 (350)
Q Consensus 257 ~----~~~~~~~-~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n 323 (350)
. ...+..+ ..+++++++.|.++... ...+..++.++.+.+++|.+.... -........+..+.+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 2 2334445 67899999999998543 345567789999999999987531 112223344555555544
Q ss_pred c
Q 036666 324 D 324 (350)
Q Consensus 324 ~ 324 (350)
.
T Consensus 329 ~ 329 (478)
T KOG4308|consen 329 G 329 (478)
T ss_pred C
Confidence 3
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.43 E-value=0.0013 Score=53.66 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=37.5
Q ss_pred CCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 036666 264 CSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLH 343 (350)
Q Consensus 264 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 343 (350)
....+.||++.|++. .+-.-+.-+..|..|+++.|++. ..|..+.....+..+++.+|.+. ..|.++...|++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344444454444443 22222333344444555555444 44444444444444444444444 4444455555555555
Q ss_pred CcCCCC
Q 036666 344 LSDNML 349 (350)
Q Consensus 344 l~~n~l 349 (350)
.-+|.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 444443
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.01 E-value=0.038 Score=49.25 Aligned_cols=160 Identities=19% Similarity=0.062 Sum_probs=87.6
Q ss_pred CCCCCCEEECCCC-cCCcCCCc-CCCCCCCCCeEeCCCCCCC-CCCCcc-cCCCCCCCEEEccCCCC-CCCCCccC-CCC
Q 036666 94 SLSSLQLLNLSST-NISGIIPP-SFGQLTHLRLLDLSSNSLS-GPIPEE-LGQLSLLQFLFLNTNRL-SGSIPPQL-ANL 167 (350)
Q Consensus 94 ~~~~L~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~L~~~~~~-~~~~~~-~~~l~~L~~L~L~~n~~-~~~~~~~l-~~l 167 (350)
.+..+-.+++..+ .++..-.. .=..+.+|+.++.+++.-. +..-.+ ..+.++|+++.+..|+- +..-...+ .+.
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 3444555555444 33322111 1134667777777776432 111111 24567788888777652 22111122 355
Q ss_pred CCCCEEEcccCcCC--CCCCccCCCCCCCCEEeccCCCCCcccCChhh----cCCCCcCeeecccccCc-CCCCccccCC
Q 036666 168 TSLQVLCLQDNLLN--GSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL----GMLTNLTTFGAAATGLS-GVIPPTFGNL 240 (350)
Q Consensus 168 ~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l----~~~~~L~~L~l~~~~~~-~~~~~~l~~~ 240 (350)
+.|+.+++.++... +.+...-.+++.|+.+.++.+..+++.....+ .....++.+.+++++.. ....+.+..+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 77777777766532 12233334667788888877765554422222 33567777888877654 3344566777
Q ss_pred CcCceEeeccccc
Q 036666 241 INLQTLALYDTEV 253 (350)
Q Consensus 241 ~~L~~L~l~~~~~ 253 (350)
++|+.+++-++.-
T Consensus 426 ~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 426 RNLERIELIDCQD 438 (483)
T ss_pred cccceeeeechhh
Confidence 7888888877653
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=0.029 Score=45.05 Aligned_cols=83 Identities=20% Similarity=0.154 Sum_probs=43.5
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCC-CccC-CCCCCCCEEeccCCCCCcccCChhhcCCCCcCe
Q 036666 144 SLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSI-PSQL-GSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTT 221 (350)
Q Consensus 144 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~-~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~ 221 (350)
..++.++-+++.+..+.-+.+.+++.++.|.+.++...+.. -..+ .-.++|+.|++++|+-+++.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34666666666665554455666666666666666532100 0001 123556666666665455444445555555555
Q ss_pred eeccc
Q 036666 222 FGAAA 226 (350)
Q Consensus 222 L~l~~ 226 (350)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55444
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.38 E-value=0.061 Score=27.07 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=5.5
Q ss_pred CCCCEEEccCCcCc
Q 036666 313 SALVVLDASANDLS 326 (350)
Q Consensus 313 ~~L~~L~l~~n~l~ 326 (350)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444444
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.94 E-value=0.36 Score=24.70 Aligned_cols=13 Identities=46% Similarity=0.409 Sum_probs=5.2
Q ss_pred CCCEEeccCccCc
Q 036666 290 KLTSLLLWGNTLS 302 (350)
Q Consensus 290 ~L~~L~l~~n~~~ 302 (350)
+|++|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.94 E-value=0.36 Score=24.70 Aligned_cols=13 Identities=46% Similarity=0.409 Sum_probs=5.2
Q ss_pred CCCEEeccCccCc
Q 036666 290 KLTSLLLWGNTLS 302 (350)
Q Consensus 290 ~L~~L~l~~n~~~ 302 (350)
+|++|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.60 E-value=0.0072 Score=49.51 Aligned_cols=81 Identities=22% Similarity=0.171 Sum_probs=39.4
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
+++.||++.+.. ..+-..++-+..+..|+++.|.+. ..|..+.....+..+++..|..+ ..|.++...++++++++
T Consensus 43 r~tvld~~s~r~--vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 43 RVTVLDLSSNRL--VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred eeeeehhhhhHH--HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 455555555544 222233333444455555555554 34444555555555555555444 44555555555555555
Q ss_pred cCCCC
Q 036666 152 NTNRL 156 (350)
Q Consensus 152 ~~n~~ 156 (350)
..+.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 55443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.37 E-value=1.1 Score=23.03 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=5.9
Q ss_pred CCCEEeCcCCCC
Q 036666 338 LLEQLHLSDNML 349 (350)
Q Consensus 338 ~L~~L~l~~n~l 349 (350)
+|+.|++++|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 445555555544
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.97 E-value=1.1 Score=23.43 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=8.1
Q ss_pred CCCCEEeCcCCCC
Q 036666 337 VLLEQLHLSDNML 349 (350)
Q Consensus 337 ~~L~~L~l~~n~l 349 (350)
++|++|||++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4566666666665
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.11 E-value=20 Score=33.20 Aligned_cols=107 Identities=22% Similarity=0.172 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCC---CCCCCCCeEeCCCCCCCCCCCcccCC---CC
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSF---GQLTHLRLLDLSSNSLSGPIPEELGQ---LS 144 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L~~~~~~~~~~~~~~~---l~ 144 (350)
.+++.++++-+.+. ..+|..+..-. --+.++.|..+......+ ..=..+.+++++.|...+.+|..+.. -.
T Consensus 165 pr~r~~dls~npi~-dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNPIG-DKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCccc-ccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 46677777777766 55554433211 114444444432211101 11134677777777766666553321 12
Q ss_pred CCCEEEccCCCCCC---CCCccCCCCCCCCEEEcccCcC
Q 036666 145 LLQFLFLNTNRLSG---SIPPQLANLTSLQVLCLQDNLL 180 (350)
Q Consensus 145 ~L~~L~L~~n~~~~---~~~~~l~~l~~L~~L~l~~n~~ 180 (350)
.+++++.+...+.. .-+-..+.-.+++..+++.|..
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 35556655544331 1112233445666666665543
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.98 E-value=2.1 Score=21.99 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=7.0
Q ss_pred CCCEEeccCccCc
Q 036666 290 KLTSLLLWGNTLS 302 (350)
Q Consensus 290 ~L~~L~l~~n~~~ 302 (350)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.52 E-value=3 Score=39.07 Aligned_cols=12 Identities=42% Similarity=0.293 Sum_probs=6.3
Q ss_pred CCCCCEEeccCc
Q 036666 288 LQKLTSLLLWGN 299 (350)
Q Consensus 288 ~~~L~~L~l~~n 299 (350)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 355555555555
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.17 E-value=4.7 Score=20.48 Aligned_cols=13 Identities=31% Similarity=0.209 Sum_probs=9.2
Q ss_pred CCCCCEEeCcCCC
Q 036666 336 LVLLEQLHLSDNM 348 (350)
Q Consensus 336 l~~L~~L~l~~n~ 348 (350)
+++|++|++++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4677777777774
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.06 E-value=44 Score=31.10 Aligned_cols=230 Identities=18% Similarity=0.071 Sum_probs=114.4
Q ss_pred CCCCEEECCCCcCCcCCCcCCCC---CCCCCeEeCCCCCCCC---CCCcccCCCCCCCEEEccCCCCCC----CCCc---
Q 036666 96 SSLQLLNLSSTNISGIIPPSFGQ---LTHLRLLDLSSNSLSG---PIPEELGQLSLLQFLFLNTNRLSG----SIPP--- 162 (350)
Q Consensus 96 ~~L~~L~l~~n~i~~~~~~~~~~---l~~L~~L~L~~~~~~~---~~~~~~~~l~~L~~L~L~~n~~~~----~~~~--- 162 (350)
..+++++++.|.....+|..... -..++.++.+...+.- .-+..+..-.+++..+++.|.... +.+.
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k 293 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEK 293 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccc
Confidence 35788999998887776654332 2346777776665431 112223344578888887775541 2222
Q ss_pred -cCCCCCCCCEEEcccCcCCCCCCc-cCC-----CCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCc
Q 036666 163 -QLANLTSLQVLCLQDNLLNGSIPS-QLG-----SLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPP 235 (350)
Q Consensus 163 -~l~~l~~L~~L~l~~n~~~~~~~~-~~~-----~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 235 (350)
.+..-+++ +|++..+.....-+. .+- .-..=-++++..|..-.......-.+-..+++|....|...+..-.
T Consensus 294 ~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 294 DTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred cccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccc
Confidence 23334556 666666543221111 000 0011124445555422222222223334577777777776654332
Q ss_pred --cccCCCcCceEeecccccc-----cCCc--ccc--cCCCCCCeEEccCCcCcccCC---hhhhCCCCCCEEeccCccC
Q 036666 236 --TFGNLINLQTLALYDTEVF-----GSIP--PEI--GLCSELRNLYLHMNKLTGSIP---SELGKLQKLTSLLLWGNTL 301 (350)
Q Consensus 236 --~l~~~~~L~~L~l~~~~~~-----~~~~--~~~--~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~~ 301 (350)
.+..-+..+.+.+....-. +... ... ....-++.+.++.+......- .....-+.+..|++++|..
T Consensus 373 vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 373 VGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred ccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCc
Confidence 2233344555555432210 0000 000 011235566666666652221 1234457788888888876
Q ss_pred cc----cCCccCcCCCCCCEEEccCCcCc
Q 036666 302 SG----PIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 302 ~~----~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
.. .+|........++.+..+.|...
T Consensus 453 gd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 453 GDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 53 35556665666777766666443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.65 E-value=6.5 Score=36.92 Aligned_cols=63 Identities=27% Similarity=0.309 Sum_probs=36.6
Q ss_pred CCCCCCEEECCCCcCCcC--CCcCCCCCCCCCeEeCCCC--CCCCCCCcccC--CCCCCCEEEccCCCCCC
Q 036666 94 SLSSLQLLNLSSTNISGI--IPPSFGQLTHLRLLDLSSN--SLSGPIPEELG--QLSLLQFLFLNTNRLSG 158 (350)
Q Consensus 94 ~~~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~~--~~~~~~~~~~~--~l~~L~~L~L~~n~~~~ 158 (350)
+.+.+..++|++|++... +...-...|+|++|+|++| .+... ..+. +...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 567777778888876532 1111123577888888887 33211 1122 23457778888877653
No 92
>COG5510 Predicted small secreted protein [Function unknown]
Probab=47.85 E-value=23 Score=20.70 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=14.7
Q ss_pred ChhHHHHHHHHHHHHHhhhccC
Q 036666 1 MKKTLLFFSFLFLLTMSNTFVS 22 (350)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (350)
||+..++++++++.....+++-
T Consensus 2 mk~t~l~i~~vll~s~llaaCN 23 (44)
T COG5510 2 MKKTILLIALVLLASTLLAACN 23 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHhh
Confidence 7887777777766665555553
No 93
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=34.61 E-value=42 Score=20.77 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=13.8
Q ss_pred ChhHHHHHHHHHHHHHhhhccCCCcch
Q 036666 1 MKKTLLFFSFLFLLTMSNTFVSSLSPD 27 (350)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (350)
|+.++++..++.+......-+.|.+.+
T Consensus 1 MR~~lLf~aiLalsla~s~gavCeesQ 27 (59)
T PF03823_consen 1 MRSTLLFAAILALSLARSFGAVCEESQ 27 (59)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 676666665554444333334444433
No 94
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=31.69 E-value=36 Score=20.35 Aligned_cols=11 Identities=55% Similarity=0.935 Sum_probs=6.7
Q ss_pred ChhHHHHHHHH
Q 036666 1 MKKTLLFFSFL 11 (350)
Q Consensus 1 m~~~~~~~~~~ 11 (350)
||+.+++++++
T Consensus 3 lKKsllLlffl 13 (46)
T PF03032_consen 3 LKKSLLLLFFL 13 (46)
T ss_pred chHHHHHHHHH
Confidence 77765555544
No 95
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=31.51 E-value=49 Score=22.04 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=9.1
Q ss_pred ChhHHHHHHHHHHHH
Q 036666 1 MKKTLLFFSFLFLLT 15 (350)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (350)
|||....++.++.+.
T Consensus 1 MKK~~~~~~~i~~l~ 15 (80)
T PF11106_consen 1 MKKIIYGLFAILALA 15 (80)
T ss_pred ChhHHHHHHHHHHHH
Confidence 999766555444443
No 96
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=28.59 E-value=68 Score=19.32 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=9.6
Q ss_pred ChhHHHHHHHHHHHHHhhhc
Q 036666 1 MKKTLLFFSFLFLLTMSNTF 20 (350)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (350)
||+...+++.++++....+.
T Consensus 2 mKk~i~~i~~~l~~~~~l~~ 21 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTA 21 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 67755554444444333333
No 97
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=28.44 E-value=24 Score=20.60 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=7.0
Q ss_pred ChhHHHHHHHHHH
Q 036666 1 MKKTLLFFSFLFL 13 (350)
Q Consensus 1 m~~~~~~~~~~~~ 13 (350)
||+.....++++.
T Consensus 1 MkKi~~~~i~~~~ 13 (46)
T PF02402_consen 1 MKKIIFIGIFLLT 13 (46)
T ss_pred CcEEEEeHHHHHH
Confidence 7875544444444
No 98
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=26.61 E-value=89 Score=15.07 Aligned_cols=11 Identities=27% Similarity=0.214 Sum_probs=6.0
Q ss_pred ChhHHHHHHHH
Q 036666 1 MKKTLLFFSFL 11 (350)
Q Consensus 1 m~~~~~~~~~~ 11 (350)
||+..++-...
T Consensus 1 MKklaiMaa~s 11 (21)
T PF12393_consen 1 MKKLAIMAAAS 11 (21)
T ss_pred CchHHHHHHHH
Confidence 78755544333
No 99
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.59 E-value=72 Score=20.08 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=10.0
Q ss_pred ChhHHHHHHHHHHHHHhhhc
Q 036666 1 MKKTLLFFSFLFLLTMSNTF 20 (350)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (350)
|+..++.+.++.+.++++.+
T Consensus 1 MA~Kl~vialLC~aLva~vQ 20 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQ 20 (65)
T ss_pred CcchhhHHHHHHHHHHHHHh
Confidence 66655555555444444333
No 100
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=26.31 E-value=55 Score=16.67 Aligned_cols=6 Identities=50% Similarity=0.445 Sum_probs=2.7
Q ss_pred hhHHHH
Q 036666 2 KKTLLF 7 (350)
Q Consensus 2 ~~~~~~ 7 (350)
|+.+..
T Consensus 8 Kkil~~ 13 (25)
T PF08139_consen 8 KKILFP 13 (25)
T ss_pred HHHHHH
Confidence 663333
No 101
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.25 E-value=1.4e+02 Score=21.85 Aligned_cols=19 Identities=37% Similarity=0.481 Sum_probs=12.1
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q 036666 1 MKKTLLFFSFLFLLTMSNT 19 (350)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (350)
||+.+++.+++++...+++
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 8997777655555544444
No 102
>PRK10053 hypothetical protein; Provisional
Probab=23.90 E-value=73 Score=24.00 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=11.4
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q 036666 1 MKKTLLFFSFLFLLTMSNT 19 (350)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (350)
||+.+++.+++++...+++
T Consensus 1 MKK~~~~~~~~~~s~~~~A 19 (130)
T PRK10053 1 MKLQAIALASFLVMPYALA 19 (130)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 9997666655555443343
No 103
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=22.37 E-value=46 Score=21.96 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHH
Q 036666 1 MKKTLLFFSFLFLLT 15 (350)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (350)
||-..++++++++++
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 676544444444444
No 104
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=21.24 E-value=85 Score=18.48 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHH
Q 036666 1 MKKTLLFFSFLFLL 14 (350)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (350)
|||.+.-.++-+++
T Consensus 1 mkkll~~slltlam 14 (48)
T PF05968_consen 1 MKKLLIGSLLTLAM 14 (48)
T ss_pred CchHHHhHHHHHHH
Confidence 88855544444444
No 105
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.21 E-value=76 Score=36.56 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=26.8
Q ss_pred ECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCC
Q 036666 102 NLSSTNISGIIPPSFGQLTHLRLLDLSSNSLS 133 (350)
Q Consensus 102 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~ 133 (350)
||++|+|....+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888988777778888899999999998775
Done!