Query 036666
Match_columns 350
No_of_seqs 278 out of 3379
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 06:40:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4E-43 1.4E-47 309.1 17.3 292 22-324 2-302 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-42 4.4E-47 340.9 20.4 318 19-348 5-379 (768)
3 4eco_A Uncharacterized protein 100.0 3.3E-42 1.1E-46 331.0 14.6 317 23-350 27-470 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 4.1E-40 1.4E-44 322.4 15.3 311 22-349 265-709 (876)
5 3rgz_A Protein brassinosteroid 100.0 2.7E-38 9.2E-43 310.2 22.1 277 72-350 369-717 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 2.8E-37 9.5E-42 286.0 25.6 278 71-350 30-408 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 8.6E-36 2.9E-40 277.6 27.2 277 71-349 32-332 (477)
8 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-36 5.1E-41 267.1 13.3 249 96-348 50-302 (313)
9 2id5_A Lingo-1, leucine rich r 100.0 4.6E-35 1.6E-39 272.7 23.2 256 71-328 56-335 (477)
10 3v47_A TOLL-like receptor 5B a 100.0 1.6E-34 5.4E-39 267.5 25.3 261 86-350 23-384 (455)
11 3t6q_A CD180 antigen; protein- 100.0 2.1E-33 7.1E-38 269.1 29.2 275 72-350 255-536 (606)
12 4fcg_A Uncharacterized protein 100.0 6E-35 2E-39 258.4 16.1 280 22-326 23-314 (328)
13 3t6q_A CD180 antigen; protein- 100.0 3.9E-34 1.4E-38 274.1 22.6 276 71-350 278-560 (606)
14 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-33 9.3E-38 268.3 27.9 130 72-202 33-163 (606)
15 1xku_A Decorin; proteoglycan, 100.0 6.6E-33 2.3E-37 245.9 26.1 280 60-348 31-330 (330)
16 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-33 1.7E-37 246.9 25.2 279 60-348 33-331 (332)
17 3o6n_A APL1; leucine-rich repe 100.0 1.1E-33 3.8E-38 256.6 21.3 266 71-349 45-351 (390)
18 2z80_A TOLL-like receptor 2, v 100.0 1.2E-33 4.1E-38 253.0 19.3 279 57-350 27-314 (353)
19 3j0a_A TOLL-like receptor 5; m 100.0 5.4E-33 1.9E-37 275.3 25.3 288 60-350 14-375 (844)
20 3oja_B Anopheles plasmodium-re 100.0 2.6E-33 8.9E-38 267.5 21.9 265 72-349 52-357 (597)
21 1xku_A Decorin; proteoglycan, 100.0 4E-32 1.4E-36 240.8 27.7 268 72-350 32-306 (330)
22 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-32 8.7E-37 265.0 26.8 276 71-348 25-364 (680)
23 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-33 6.4E-38 266.3 18.3 275 71-349 26-422 (549)
24 2ft3_A Biglycan; proteoglycan, 100.0 4.4E-32 1.5E-36 240.8 26.0 267 72-350 34-307 (332)
25 4eco_A Uncharacterized protein 100.0 1.2E-33 4.2E-38 271.4 16.0 267 71-345 206-544 (636)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-32 7.3E-37 259.7 24.0 126 71-203 52-180 (562)
27 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-32 1.3E-36 269.1 24.8 273 71-350 48-394 (844)
28 3vq2_A TLR4, TOLL-like recepto 100.0 8.1E-32 2.8E-36 258.1 26.1 140 211-350 393-534 (606)
29 2z63_A TOLL-like receptor 4, v 100.0 8.9E-32 3E-36 255.9 25.6 109 72-181 53-162 (570)
30 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-31 5E-36 257.4 27.4 132 71-203 52-184 (635)
31 2z7x_B TOLL-like receptor 1, v 100.0 4.5E-32 1.5E-36 255.2 21.6 107 71-181 21-128 (520)
32 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-32 1.2E-36 255.8 20.9 124 74-204 3-127 (520)
33 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-31 1.6E-35 256.1 27.9 276 73-350 250-597 (680)
34 2z63_A TOLL-like receptor 4, v 100.0 1.5E-31 5.2E-36 254.3 23.2 134 217-350 396-531 (570)
35 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-31 7.1E-36 252.9 23.8 145 74-229 34-181 (562)
36 3zyi_A Leucine-rich repeat-con 100.0 1.4E-30 4.9E-35 240.6 26.9 246 75-326 58-303 (452)
37 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-30 5.7E-35 250.0 27.8 143 86-230 44-186 (635)
38 2z66_A Variable lymphocyte rec 100.0 2.2E-31 7.6E-36 233.6 19.6 253 59-328 6-263 (306)
39 3o6n_A APL1; leucine-rich repe 100.0 3.1E-31 1.1E-35 240.5 21.0 252 94-350 43-331 (390)
40 1ozn_A Reticulon 4 receptor; N 100.0 2.6E-31 9.1E-36 230.7 19.4 277 65-348 6-285 (285)
41 4fmz_A Internalin; leucine ric 100.0 1.5E-30 5.1E-35 232.3 23.8 261 71-350 66-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 2.8E-30 9.5E-35 230.6 25.3 261 71-350 44-324 (347)
43 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-31 9.2E-36 251.5 19.8 277 59-350 3-400 (549)
44 4ecn_A Leucine-rich repeat pro 100.0 1.7E-30 6E-35 254.5 25.7 264 72-349 516-839 (876)
45 2z66_A Variable lymphocyte rec 100.0 4E-31 1.4E-35 232.0 19.0 247 99-350 10-261 (306)
46 3zyi_A Leucine-rich repeat-con 100.0 2.9E-30 9.9E-35 238.6 25.5 246 98-349 56-302 (452)
47 3zyj_A Leucine-rich repeat-con 100.0 3.1E-30 1E-34 237.6 24.9 246 75-326 47-292 (440)
48 3zyj_A Leucine-rich repeat-con 100.0 5.7E-30 2E-34 235.8 25.5 245 99-349 46-291 (440)
49 3oja_B Anopheles plasmodium-re 100.0 1.1E-30 3.9E-35 249.3 21.1 252 94-350 49-337 (597)
50 4fcg_A Uncharacterized protein 100.0 1.2E-30 4.3E-35 230.7 19.5 234 95-349 80-313 (328)
51 1o6v_A Internalin A; bacterial 100.0 4.6E-29 1.6E-33 231.4 24.2 258 71-350 68-366 (466)
52 1ozn_A Reticulon 4 receptor; N 100.0 3.6E-29 1.2E-33 217.3 22.0 225 99-327 14-239 (285)
53 1o6v_A Internalin A; bacterial 100.0 9.6E-29 3.3E-33 229.3 24.4 256 71-348 46-320 (466)
54 2z80_A TOLL-like receptor 2, v 100.0 1.1E-29 3.7E-34 227.3 16.5 258 71-330 52-318 (353)
55 3bz5_A Internalin-J, INLJ; leu 100.0 9.7E-28 3.3E-32 221.3 26.2 253 71-350 42-331 (457)
56 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-27 5.9E-32 219.6 27.4 255 71-350 64-352 (457)
57 1wwl_A Monocyte differentiatio 100.0 6.7E-32 2.3E-36 237.4 -2.3 245 95-350 42-309 (312)
58 2o6q_A Variable lymphocyte rec 100.0 9E-28 3.1E-32 206.7 23.0 217 57-278 2-218 (270)
59 3o53_A Protein LRIM1, AGAP0063 100.0 1.1E-30 3.7E-35 230.2 0.8 257 73-345 12-270 (317)
60 3o53_A Protein LRIM1, AGAP0063 100.0 5.6E-29 1.9E-33 219.3 8.2 238 98-350 12-250 (317)
61 1wwl_A Monocyte differentiatio 100.0 2.5E-30 8.7E-35 227.3 -0.7 245 72-328 44-311 (312)
62 2z62_A TOLL-like receptor 4, v 99.9 1.3E-26 4.5E-31 200.1 20.3 225 100-329 11-240 (276)
63 3oja_A Leucine-rich immune mol 99.9 1.3E-28 4.5E-33 229.0 8.0 237 94-345 32-270 (487)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1E-26 3.6E-31 220.8 20.4 262 48-350 11-297 (622)
65 2z62_A TOLL-like receptor 4, v 99.9 1.2E-26 4.2E-31 200.3 19.1 216 86-304 20-239 (276)
66 3oja_A Leucine-rich immune mol 99.9 8.3E-28 2.8E-32 223.6 11.4 219 117-350 31-250 (487)
67 2o6q_A Variable lymphocyte rec 99.9 1.5E-25 5.2E-30 192.8 23.3 204 120-327 16-219 (270)
68 1jl5_A Outer protein YOPM; leu 99.9 3E-25 1E-29 204.4 26.0 229 96-350 131-409 (454)
69 1z7x_W Ribonuclease inhibitor; 99.9 2E-29 7E-34 233.5 -7.4 278 72-350 86-411 (461)
70 1p9a_G Platelet glycoprotein I 99.9 5.7E-25 1.9E-29 190.9 20.5 203 116-326 6-208 (290)
71 1jl5_A Outer protein YOPM; leu 99.9 9.8E-26 3.4E-30 207.7 16.5 247 72-350 12-290 (454)
72 3rfs_A Internalin B, repeat mo 99.9 2.6E-25 8.9E-30 191.5 17.2 207 93-311 38-244 (272)
73 3rfs_A Internalin B, repeat mo 99.9 5.1E-25 1.8E-29 189.6 18.3 206 118-335 39-244 (272)
74 1p9a_G Platelet glycoprotein I 99.9 2.9E-24 9.9E-29 186.4 20.0 205 91-303 5-209 (290)
75 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-28 5E-33 227.8 -8.6 279 71-350 56-383 (461)
76 3m19_A Variable lymphocyte rec 99.9 5.1E-24 1.7E-28 181.2 19.3 191 58-255 3-193 (251)
77 2ast_B S-phase kinase-associat 99.9 1.9E-27 6.6E-32 211.2 -2.6 268 58-335 35-315 (336)
78 4glp_A Monocyte differentiatio 99.9 1.3E-24 4.5E-29 190.7 14.8 199 145-350 92-307 (310)
79 2ca6_A RAN GTPase-activating p 99.9 1.8E-27 6.1E-32 215.5 -3.6 243 87-329 23-319 (386)
80 3goz_A Leucine-rich repeat-con 99.9 1.1E-26 3.6E-31 208.5 1.0 253 76-330 3-301 (362)
81 2ca6_A RAN GTPase-activating p 99.9 1.1E-26 3.7E-31 210.4 -1.6 238 112-350 24-316 (386)
82 2xwt_C Thyrotropin receptor; s 99.9 7.4E-24 2.5E-28 178.9 16.0 204 86-323 24-236 (239)
83 2xwt_C Thyrotropin receptor; s 99.9 8.9E-24 3.1E-28 178.4 16.5 197 121-348 32-237 (239)
84 2ast_B S-phase kinase-associat 99.9 2.7E-26 9.2E-31 203.8 0.3 246 97-350 48-306 (336)
85 4glp_A Monocyte differentiatio 99.9 4.5E-24 1.5E-28 187.3 13.8 227 96-327 64-308 (310)
86 3m19_A Variable lymphocyte rec 99.9 4.7E-23 1.6E-27 175.2 19.2 181 144-328 14-194 (251)
87 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-22 4.4E-27 192.8 21.6 228 71-334 61-305 (622)
88 1h6u_A Internalin H; cell adhe 99.9 1.9E-23 6.5E-28 183.0 14.3 207 102-327 25-231 (308)
89 3goz_A Leucine-rich repeat-con 99.9 1.1E-25 3.7E-30 201.9 -0.4 250 100-350 2-297 (362)
90 1h6u_A Internalin H; cell adhe 99.9 1E-22 3.5E-27 178.3 17.7 194 93-303 38-231 (308)
91 2o6s_A Variable lymphocyte rec 99.9 3E-22 1E-26 165.4 17.9 184 58-264 5-188 (208)
92 4ay9_X Follicle-stimulating ho 99.9 1E-21 3.6E-26 175.1 19.4 231 86-323 22-256 (350)
93 4ay9_X Follicle-stimulating ho 99.9 1.7E-21 5.7E-26 173.8 17.6 240 99-347 12-256 (350)
94 2o6s_A Variable lymphocyte rec 99.9 3.2E-21 1.1E-25 159.2 16.3 149 99-251 10-158 (208)
95 3ogk_B Coronatine-insensitive 99.9 1.1E-23 3.9E-28 200.9 -3.2 278 71-350 192-526 (592)
96 3cvr_A Invasion plasmid antige 99.8 2E-20 7E-25 175.6 16.4 188 96-312 59-253 (571)
97 3cvr_A Invasion plasmid antige 99.8 8.6E-20 3E-24 171.4 19.2 207 50-288 34-253 (571)
98 3e6j_A Variable lymphocyte rec 99.8 1.7E-19 5.9E-24 150.9 18.5 160 56-232 15-174 (229)
99 3ogk_B Coronatine-insensitive 99.8 1.3E-22 4.5E-27 193.6 -3.2 111 240-350 377-501 (592)
100 2v9t_B SLIT homolog 2 protein 99.8 3.8E-19 1.3E-23 147.8 18.1 151 75-230 15-165 (220)
101 2v9t_B SLIT homolog 2 protein 99.8 1.6E-19 5.5E-24 150.1 14.7 152 171-326 14-165 (220)
102 1h6t_A Internalin B; cell adhe 99.8 1.1E-19 3.9E-24 157.6 14.1 191 121-328 25-215 (291)
103 1m9s_A Internalin B; cell inva 99.8 7.2E-20 2.4E-24 173.7 13.8 191 98-305 23-213 (605)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-19 8.7E-24 148.9 14.9 153 171-327 14-167 (220)
105 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5.3E-24 171.4 15.2 174 92-280 39-212 (605)
106 2xot_A Amphoterin-induced prot 99.8 8.9E-20 3E-24 163.3 12.7 176 147-326 21-202 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 8.2E-19 2.8E-23 145.8 17.3 153 75-232 15-168 (220)
108 1h6t_A Internalin B; cell adhe 99.8 3.6E-19 1.2E-23 154.4 15.8 170 94-278 44-213 (291)
109 2xot_A Amphoterin-induced prot 99.8 3.6E-19 1.2E-23 159.4 15.1 175 75-254 22-202 (361)
110 3e6j_A Variable lymphocyte rec 99.8 8.3E-19 2.8E-23 146.7 16.0 154 170-328 21-174 (229)
111 4ezg_A Putative uncharacterize 99.8 5.4E-19 1.8E-23 144.4 12.6 131 213-349 62-193 (197)
112 4b8c_D Glucose-repressible alc 99.8 2.3E-20 7.7E-25 181.3 3.9 262 23-302 129-404 (727)
113 3sb4_A Hypothetical leucine ri 99.8 2.1E-19 7.2E-24 158.8 9.8 241 95-344 48-328 (329)
114 4ezg_A Putative uncharacterize 99.8 1E-18 3.4E-23 142.8 12.4 106 217-326 88-194 (197)
115 2p1m_B Transport inhibitor res 99.8 1.2E-21 4E-26 187.1 -7.0 86 263-349 430-518 (594)
116 2p1m_B Transport inhibitor res 99.8 2.5E-21 8.5E-26 184.8 -5.5 278 71-350 130-494 (594)
117 1dce_A Protein (RAB geranylger 99.8 7.4E-22 2.5E-26 186.2 -13.6 204 117-344 346-567 (567)
118 2ell_A Acidic leucine-rich nuc 99.7 9.4E-18 3.2E-22 133.4 11.7 132 216-349 23-159 (168)
119 1xeu_A Internalin C; cellular 99.7 2.5E-18 8.6E-23 146.8 8.9 171 142-328 17-187 (263)
120 1w8a_A SLIT protein; signaling 99.7 2.3E-17 7.9E-22 134.1 13.4 108 242-349 30-138 (192)
121 1xeu_A Internalin C; cellular 99.7 3.4E-18 1.2E-22 146.0 8.2 169 95-279 18-186 (263)
122 4fdw_A Leucine rich hypothetic 99.7 6.7E-16 2.3E-20 139.5 21.5 245 91-348 131-381 (401)
123 2je0_A Acidic leucine-rich nuc 99.7 1.4E-17 4.9E-22 129.6 8.9 129 216-346 16-149 (149)
124 1dce_A Protein (RAB geranylger 99.7 2.9E-21 1E-25 182.1 -14.7 139 207-350 399-546 (567)
125 4b8c_D Glucose-repressible alc 99.7 3.4E-18 1.2E-22 166.0 4.6 218 96-326 173-404 (727)
126 4fdw_A Leucine rich hypothetic 99.7 2.7E-15 9.1E-20 135.5 22.5 241 95-349 112-357 (401)
127 1w8a_A SLIT protein; signaling 99.7 2.9E-16 9.9E-21 127.5 13.9 126 74-203 11-137 (192)
128 2ell_A Acidic leucine-rich nuc 99.7 1.4E-16 4.7E-21 126.6 11.2 132 192-326 24-160 (168)
129 2wfh_A SLIT homolog 2 protein 99.7 3.2E-16 1.1E-20 127.3 13.4 107 242-349 32-138 (193)
130 2o6r_A Variable lymphocyte rec 99.7 7E-16 2.4E-20 123.6 14.2 112 217-328 28-139 (177)
131 3sb4_A Hypothetical leucine ri 99.7 5.4E-17 1.9E-21 143.3 7.3 241 71-320 49-328 (329)
132 2o6r_A Variable lymphocyte rec 99.7 2.3E-15 7.8E-20 120.6 16.1 116 86-203 20-135 (177)
133 2je0_A Acidic leucine-rich nuc 99.7 1.7E-16 5.8E-21 123.4 8.5 106 96-203 17-124 (149)
134 2wfh_A SLIT homolog 2 protein 99.7 1.7E-15 5.9E-20 122.9 14.6 125 75-204 14-138 (193)
135 1a9n_A U2A', U2A'; complex (nu 99.6 8E-16 2.7E-20 123.1 9.3 129 214-348 16-151 (176)
136 1ds9_A Outer arm dynein; leuci 99.6 1.4E-17 4.9E-22 136.0 -7.2 131 212-349 43-184 (198)
137 3g39_A Variable lymphocyte rec 99.6 3.4E-14 1.2E-18 112.8 11.6 106 219-327 11-116 (170)
138 1a9n_A U2A', U2A'; complex (nu 99.5 8.5E-15 2.9E-19 117.1 7.9 132 164-325 15-152 (176)
139 2r9u_A Variable lymphocyte rec 99.5 6E-14 2.1E-18 111.8 11.5 104 220-326 15-118 (174)
140 2r9u_A Variable lymphocyte rec 99.5 2.8E-13 9.7E-18 107.9 14.8 104 74-181 15-118 (174)
141 3g39_A Variable lymphocyte rec 99.5 2E-13 7E-18 108.3 13.2 104 74-181 12-115 (170)
142 1ds9_A Outer arm dynein; leuci 99.5 4.6E-16 1.6E-20 127.0 -6.3 132 213-349 14-152 (198)
143 4fs7_A Uncharacterized protein 99.4 5.4E-12 1.9E-16 114.0 18.7 84 260-346 292-375 (394)
144 3un9_A NLR family member X1; l 99.4 1E-14 3.6E-19 130.4 -1.4 182 167-349 71-282 (372)
145 3un9_A NLR family member X1; l 99.4 3.9E-15 1.3E-19 133.2 -6.4 183 143-326 71-283 (372)
146 2ifg_A High affinity nerve gro 99.4 5.7E-12 2E-16 111.9 12.4 108 59-181 7-116 (347)
147 4gt6_A Cell surface protein; l 99.3 1.2E-10 4.1E-15 105.2 21.0 247 91-347 82-367 (394)
148 4fs7_A Uncharacterized protein 99.3 6E-11 2E-15 107.2 17.9 164 168-342 230-393 (394)
149 2ifg_A High affinity nerve gro 99.3 8.7E-12 3E-16 110.7 11.0 103 221-326 12-116 (347)
150 4gt6_A Cell surface protein; l 99.2 2.1E-09 7.1E-14 97.0 20.3 247 91-347 58-344 (394)
151 2ra8_A Uncharacterized protein 99.1 1E-11 3.5E-16 110.2 2.7 180 120-303 107-321 (362)
152 4h09_A Hypothetical leucine ri 99.1 1.7E-08 5.8E-13 90.5 21.8 127 215-345 215-341 (379)
153 2ra8_A Uncharacterized protein 99.1 7.2E-11 2.5E-15 104.8 4.4 199 144-348 107-341 (362)
154 4h09_A Hypothetical leucine ri 98.9 3.4E-07 1.2E-11 82.0 20.5 254 72-340 70-359 (379)
155 1io0_A Tropomodulin; LRR prote 98.8 1.3E-09 4.4E-14 87.5 1.3 43 211-253 30-77 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 9.8E-09 3.3E-13 82.3 1.1 114 236-349 31-163 (185)
157 3rw6_A Nuclear RNA export fact 98.6 1E-08 3.5E-13 86.4 1.2 81 262-344 167-258 (267)
158 3e4g_A ATP synthase subunit S, 98.5 3.7E-08 1.3E-12 77.2 2.1 88 240-327 60-154 (176)
159 3rw6_A Nuclear RNA export fact 98.3 9.1E-08 3.1E-12 80.6 0.7 84 265-350 141-233 (267)
160 3e4g_A ATP synthase subunit S, 98.3 3E-07 1E-11 72.0 3.2 84 217-300 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 1.2E-05 4.1E-10 64.1 2.8 41 213-253 37-82 (197)
162 3rfe_A Platelet glycoprotein I 97.3 0.00049 1.7E-08 51.1 6.3 56 269-326 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00011 3.8E-09 58.5 2.8 114 235-348 35-168 (197)
164 3rfe_A Platelet glycoprotein I 97.1 0.0018 6.1E-08 48.0 7.2 57 75-133 12-68 (130)
165 2lz0_A Uncharacterized protein 79.3 6.9 0.00024 26.9 6.5 46 107-153 7-52 (100)
166 2lz0_A Uncharacterized protein 75.0 4.4 0.00015 27.9 4.5 47 276-323 7-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4e-43 Score=309.07 Aligned_cols=292 Identities=31% Similarity=0.498 Sum_probs=196.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCC--cCceeeCCC---CCEEEEEcCCCCCCCC--CCCccCCC
Q 036666 22 SSLSPDGEALLSLISAAGPSAKASSSILSSWNPSNLTPCS--WQGITCSPQ---NRVISLSLPDTFLNLS--ALPPQLSS 94 (350)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~c~--~~~~~c~~~---~~v~~l~l~~~~~~~~--~~~~~~~~ 94 (350)
.|.++|++|++.||..+. ++. .+.+|. .+.++|. |.||.|+.. ++|+.++++++.+. + .+|..+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~----~~~-~l~~W~-~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~-~~~~~~~~l~~ 74 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG----NPT-TLSSWL-PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP-KPYPIPSSLAN 74 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT----CCG-GGTTCC-TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS-SCEECCGGGGG
T ss_pred CCCHHHHHHHHHHHHhcC----Ccc-cccCCC-CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCcc-CCcccChhHhC
Confidence 467889999999999997 554 678997 3568898 999999854 68999999998886 5 67888888
Q ss_pred CCCCCEEECCC-CcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEE
Q 036666 95 LSSLQLLNLSS-TNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVL 173 (350)
Q Consensus 95 ~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 173 (350)
+++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 88888888884 77877777778888888888888888877777777778888888888887777777777777777777
Q ss_pred EcccCcCCCCCCccCCCCC-CCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccc
Q 036666 174 CLQDNLLNGSIPSQLGSLV-SLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTE 252 (350)
Q Consensus 174 ~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 252 (350)
++++|++.+.+|..+..++ +|++|++++|. +.+..+..+..++ |++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 7777777666666666665 66666666665 4445555555554 5555555555555555555555555555555555
Q ss_pred cccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCc
Q 036666 253 VFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASAND 324 (350)
Q Consensus 253 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 324 (350)
+.+.++. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5433332 444455555555555555444555555555555555555555444443 444455555555553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-42 Score=340.86 Aligned_cols=318 Identities=30% Similarity=0.439 Sum_probs=185.6
Q ss_pred hccCCCcchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcCceeeCCCCCEEEEEcCCCCCCCCC---CC------
Q 036666 19 TFVSSLSPDGEALLSLISAAGPSAKASSSILSSWNPSNLTPCSWQGITCSPQNRVISLSLPDTFLNLSA---LP------ 89 (350)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~c~~~~~~c~~~~~v~~l~l~~~~~~~~~---~~------ 89 (350)
++++..++|++|++.||..+. |+. .+.+|. .+.+||.|.||.|+ .++|+.++++++.+. +. ++
T Consensus 5 ~~~~~~~~~~~all~~k~~~~----~~~-~l~~W~-~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~-g~~~~l~~~l~~L 76 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP----DKN-LLPDWS-SNKNPCTFDGVTCR-DDKVTSIDLSSKPLN-VGFSAVSSSLLSL 76 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS----CTT-SSTTCC-TTSCGGGSTTEEEE-TTEEEEEECTTSCCC-EEHHHHHHHTTTC
T ss_pred ccccCCHHHHHHHHHHHhhCC----Ccc-cccCCC-CCCCCcCCcceEEC-CCcEEEEECCCCCcC-CccCccChhHhcc
Confidence 344456789999999999987 776 789998 56789999999998 789999999998775 43 33
Q ss_pred -----------------ccCCCCCCCCEEECCCCcCCcCCCc--CCCCCCCCCeEeCCCCCCCCCCCccc-CCCCCCCEE
Q 036666 90 -----------------PQLSSLSSLQLLNLSSTNISGIIPP--SFGQLTHLRLLDLSSNSLSGPIPEEL-GQLSLLQFL 149 (350)
Q Consensus 90 -----------------~~~~~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L 149 (350)
..+.++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..|..+ .++++|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 4566777777777777777766666 67777777777777777666555544 566677777
Q ss_pred EccCCCCCCCCCcc---CCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeeccc
Q 036666 150 FLNTNRLSGSIPPQ---LANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAA 226 (350)
Q Consensus 150 ~L~~n~~~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 226 (350)
++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|. +.+..+. ++.+++|++|++++
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISG 232 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcC
Confidence 77766666544443 44444555555544444432221 344445555554444 3333333 44445555555555
Q ss_pred ccCcCCCCccccCCCcCceEeecccccc----------------------cCCcccccCC-CCCCeEEccCCcCcccCCh
Q 036666 227 TGLSGVIPPTFGNLINLQTLALYDTEVF----------------------GSIPPEIGLC-SELRNLYLHMNKLTGSIPS 283 (350)
Q Consensus 227 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~----------------------~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~ 283 (350)
|.+++.+|..+..+++|++|++++|.+. +.+|..+... ++|++|++++|.+++.+|.
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred CcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence 5544444444444444444444444444 3444433332 4455555555554444444
Q ss_pred hhhCCCCCCEEeccCccCcccCCcc-CcCCCCCCEEEccCCcCcccCCccccCCC-CCCEEeCcCCC
Q 036666 284 ELGKLQKLTSLLLWGNTLSGPIPAE-LSNCSALVVLDASANDLSGELPGDLGKLV-LLEQLHLSDNM 348 (350)
Q Consensus 284 ~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 348 (350)
.++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|+
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 4555555555555555554444433 44455555555555555544554444443 45555555544
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-42 Score=330.96 Aligned_cols=317 Identities=23% Similarity=0.282 Sum_probs=260.9
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCC-------CCCCCCCCCCCCCCc---CceeeCCCCCEEEEEcCCCCCCCCCCCccC
Q 036666 23 SLSPDGEALLSLISAAGPSAKASSS-------ILSSWNPSNLTPCSW---QGITCSPQNRVISLSLPDTFLNLSALPPQL 92 (350)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~w~~~~~~~c~~---~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~ 92 (350)
...+|+.|+.++++++++ +.|. ...+|. ...++|.| .||.|+..++|+.++++++.+. +.+|+.+
T Consensus 27 ~~~~d~~aL~~~~~~~~~---~~w~~~~~~~~~~~~W~-~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~-g~lp~~l 101 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNG---KNWSQQGFGTQPGANWN-FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGAS-GRVPDAI 101 (636)
T ss_dssp HHHHHHHHHHHHHHHTTG---GGCCCCC------CCCC-CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCE-EEECGGG
T ss_pred hHHHHHHHHHHHHHHcCC---CCcccCCcCCccCCCCC-CCCCcccccCCCCeEEcCCCCEEEEEecCcccC-CcCChHH
Confidence 344789999999999873 2222 234898 45789999 9999988899999999999998 8999999
Q ss_pred CCCCCCCEEECCCCcC----------------------------------------------------------------
Q 036666 93 SSLSSLQLLNLSSTNI---------------------------------------------------------------- 108 (350)
Q Consensus 93 ~~~~~L~~L~l~~n~i---------------------------------------------------------------- 108 (350)
+++++|++|++++|.+
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 9999999999998843
Q ss_pred --------------CcCCCcCCCCCCCCCeEeCCCCCCCCC-----------------CCcccC--CCCCCCEEEccCCC
Q 036666 109 --------------SGIIPPSFGQLTHLRLLDLSSNSLSGP-----------------IPEELG--QLSLLQFLFLNTNR 155 (350)
Q Consensus 109 --------------~~~~~~~~~~l~~L~~L~L~~~~~~~~-----------------~~~~~~--~l~~L~~L~L~~n~ 155 (350)
++ +|..+.++++|++|++++|.+.+. +|..+. ++++|++|++++|.
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 33 677788999999999999999975 899988 99999999999999
Q ss_pred CCCCCCccCCCCCCCCEEEcccCc-CCC-CCCccCCCC------CCCCEEeccCCCCCcccCCh--hhcCCCCcCeeecc
Q 036666 156 LSGSIPPQLANLTSLQVLCLQDNL-LNG-SIPSQLGSL------VSLQQFRIGGNPYLTGEIPT--QLGMLTNLTTFGAA 225 (350)
Q Consensus 156 ~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~~--~l~~~~~L~~L~l~ 225 (350)
+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|. +. .++. .++.+++|++|+++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS-SCCCHHHHTTCTTCCEEECC
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC-ccCchhhhccCCCCCEEeCc
Confidence 999999999999999999999998 887 677777665 899999999998 55 6777 89999999999999
Q ss_pred cccCcCCCCccccCCCcCceEeecccccccCCcccccCCCC-CCeEEccCCcCcccCChhhhCCC--CCCEEeccCccCc
Q 036666 226 ATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSE-LRNLYLHMNKLTGSIPSELGKLQ--KLTSLLLWGNTLS 302 (350)
Q Consensus 226 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~n~~~ 302 (350)
+|.+++.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+.
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 999998888 8888888999999888886 66777888888 888888888888 6776666544 7888888888887
Q ss_pred ccCCccCc-------CCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 303 GPIPAELS-------NCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 303 ~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
+..|..+. .+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 77777766 6667777777777777333334455777777777777664
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.1e-40 Score=322.43 Aligned_cols=311 Identities=21% Similarity=0.283 Sum_probs=238.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCCCCCCCCCCCC----CCC--CCc------------CceeeCCCCCEEEEEcCCCCC
Q 036666 22 SSLSPDGEALLSLISAAGPSAKASSSILSSWNPSN----LTP--CSW------------QGITCSPQNRVISLSLPDTFL 83 (350)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~----~~~--c~~------------~~~~c~~~~~v~~l~l~~~~~ 83 (350)
+...+|..|++.|++++. ++ +|.... .+| |.| .||.|+..++|+.|+++++.+
T Consensus 265 ~~~~~d~~ALl~~k~~l~----~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD----GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA 335 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT----GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCC
T ss_pred ccchHHHHHHHHHHHHcC----CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCC
Confidence 344579999999999997 43 676443 355 999 999998788999999999999
Q ss_pred CCCCCCccCCCCCCCCEEEC-CCCcCCcC---------------------------------------------------
Q 036666 84 NLSALPPQLSSLSSLQLLNL-SSTNISGI--------------------------------------------------- 111 (350)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l-~~n~i~~~--------------------------------------------------- 111 (350)
. +.+|+.++++++|++|+| ++|.+.+.
T Consensus 336 ~-G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 336 K-GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp E-EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred C-CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence 8 899999999999999999 76654322
Q ss_pred -------------------------CCcCCCCCCCCCeEeCCCCCCCC-----------------CCCcccC--CCCCCC
Q 036666 112 -------------------------IPPSFGQLTHLRLLDLSSNSLSG-----------------PIPEELG--QLSLLQ 147 (350)
Q Consensus 112 -------------------------~~~~~~~l~~L~~L~L~~~~~~~-----------------~~~~~~~--~l~~L~ 147 (350)
+|..|.++++|++|+|++|.+.+ .+|..++ ++++|+
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~ 494 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred cccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence 67778899999999999999997 3888877 999999
Q ss_pred EEEccCCCCCCCCCccCCCCCCCCEEEcccCc-CCC-CCCccCC-------CCCCCCEEeccCCCCCcccCCh--hhcCC
Q 036666 148 FLFLNTNRLSGSIPPQLANLTSLQVLCLQDNL-LNG-SIPSQLG-------SLVSLQQFRIGGNPYLTGEIPT--QLGML 216 (350)
Q Consensus 148 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~--~l~~~ 216 (350)
+|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+. .+++|++|++++|. +. .+|. .+.++
T Consensus 495 ~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~-~ip~~~~l~~L 572 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE-EFPASASLQKM 572 (876)
T ss_dssp EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC-BCCCHHHHTTC
T ss_pred EEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC-ccCChhhhhcC
Confidence 99999999999999999999999999999998 876 5665444 44599999999998 55 6777 88899
Q ss_pred CCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCC-CCeEEccCCcCcccCChhhhCCCC--CCE
Q 036666 217 TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSE-LRNLYLHMNKLTGSIPSELGKLQK--LTS 293 (350)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~ 293 (350)
++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+. |+.
T Consensus 573 ~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 573 VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648 (876)
T ss_dssp TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence 99999999999988 666 7888899999999999886 77777888888 888888888887 66666555433 666
Q ss_pred EeccCccCcccCCccC---c--CCCCCCEEEccCCcCcccCCccc-cCCCCCCEEeCcCCCC
Q 036666 294 LLLWGNTLSGPIPAEL---S--NCSALVVLDASANDLSGELPGDL-GKLVLLEQLHLSDNML 349 (350)
Q Consensus 294 L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l 349 (350)
|++++|.+.+.+|... . .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|++
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 7777666665443211 1 1234455555555544 333322 2444444454444443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-38 Score=310.21 Aligned_cols=277 Identities=36% Similarity=0.531 Sum_probs=229.9
Q ss_pred CEEEEEcCCCCCCCCCCCccCCC--CCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEE
Q 036666 72 RVISLSLPDTFLNLSALPPQLSS--LSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFL 149 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 149 (350)
.++.+++++|.+. +.+++.+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 369 ~L~~L~Ls~N~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TCSEEECCSSEEE-EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCcEEEccCCCcC-CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 4455555555544 344444444 5677777887777777777778888888888888888887888888888888888
Q ss_pred EccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccC
Q 036666 150 FLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGL 229 (350)
Q Consensus 150 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 229 (350)
++++|.+++.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|+ +.+.+|..++.+++|++|++++|.+
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEECCCCcc
Confidence 888888888888888888888888888888888888888888888888888888 6777788888888888888888888
Q ss_pred cCCCCccccCCCcCceEeecccccccCCccc-------------------------------------------------
Q 036666 230 SGVIPPTFGNLINLQTLALYDTEVFGSIPPE------------------------------------------------- 260 (350)
Q Consensus 230 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------------------------------------------------- 260 (350)
++.+|..+..+++|+.|++++|.+.+.+|..
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 8888888888888888888888777665543
Q ss_pred ---------------------ccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEE
Q 036666 261 ---------------------IGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLD 319 (350)
Q Consensus 261 ---------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 319 (350)
+..+++|+.|++++|++++.+|..++.+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 33457789999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 320 ASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 320 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
+++|+++|.+|..+..+++|++||+++|+++
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 9999999999999999999999999999874
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-37 Score=286.00 Aligned_cols=278 Identities=21% Similarity=0.207 Sum_probs=221.0
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCC-CcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGII-PPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFL 149 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 149 (350)
.+++.++++++.+. +..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 46899999999886 555778888999999999998886443 5678888999999999998887778888888889999
Q ss_pred EccCCCCCCCCCcc--CCCCCCCCEEEcccCcCCCCCCcc-CCCCCCCCEEeccCCCCCcccCChhhcC-----------
Q 036666 150 FLNTNRLSGSIPPQ--LANLTSLQVLCLQDNLLNGSIPSQ-LGSLVSLQQFRIGGNPYLTGEIPTQLGM----------- 215 (350)
Q Consensus 150 ~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~l~~----------- 215 (350)
++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|. +.+..+..+..
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccccccc
Confidence 99888887644443 778888888888888888766655 7778888888888876 44333322221
Q ss_pred -----------------------C--------------------------------------------------------
Q 036666 216 -----------------------L-------------------------------------------------------- 216 (350)
Q Consensus 216 -----------------------~-------------------------------------------------------- 216 (350)
+
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 1
Q ss_pred -------CCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCC
Q 036666 217 -------TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQ 289 (350)
Q Consensus 217 -------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 289 (350)
++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 3455555555555555667788888899999999988887788888889999999999998877788888899
Q ss_pred CCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 290 KLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 290 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
+|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 9999999999998888888888999999999999998766667788899999999999874
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.6e-36 Score=277.61 Aligned_cols=277 Identities=24% Similarity=0.233 Sum_probs=208.2
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
..++.++++++.+. +..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 47899999999986 55567899999999999999999988899999999999999999999976667789999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCc
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
+++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCc
Confidence 99999998888889999999999999999988888889999999999999998 66666667888899999999998888
Q ss_pred CCCCccccCCCcCceEeecccccccCCcc------------------------cccCCCCCCeEEccCCcCcccCChhhh
Q 036666 231 GVIPPTFGNLINLQTLALYDTEVFGSIPP------------------------EIGLCSELRNLYLHMNKLTGSIPSELG 286 (350)
Q Consensus 231 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~ 286 (350)
+..+..+..+++|++|++++|...+.++. .+..+++|+.|++++|.+++..+..+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 77776777777777777766554443333 344455555555555555544444455
Q ss_pred CCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 287 KLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 287 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
.+++|++|++++|++.+..|..+..+++|+.|++++|.+++..+..|..+++|++|++++|++
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 555555555555555555555555555555555555555544444455555555666555554
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-36 Score=267.12 Aligned_cols=249 Identities=30% Similarity=0.497 Sum_probs=235.1
Q ss_pred CCCCEEECCCCcCCc--CCCcCCCCCCCCCeEeCCC-CCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCE
Q 036666 96 SSLQLLNLSSTNISG--IIPPSFGQLTHLRLLDLSS-NSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQV 172 (350)
Q Consensus 96 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 172 (350)
.++++|++++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999998 8999999999999999995 9999899999999999999999999999889999999999999
Q ss_pred EEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCC-CcCeeecccccCcCCCCccccCCCcCceEeeccc
Q 036666 173 LCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLT-NLTTFGAAATGLSGVIPPTFGNLINLQTLALYDT 251 (350)
Q Consensus 173 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 251 (350)
|++++|.+.+.+|..+..+++|++|++++|. +.+.++..+..++ +|++|++++|.+++.+|..+..++ |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999999998899999999999999999998 7778888999998 999999999999999999999987 999999999
Q ss_pred ccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCc
Q 036666 252 EVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPG 331 (350)
Q Consensus 252 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 331 (350)
.+.+..+..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++.+.+|..+..+++|+.|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999966655 78899999999999999999999999999999999999999999997
Q ss_pred cccCCCCCCEEeCcCCC
Q 036666 332 DLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 332 ~~~~l~~L~~L~l~~n~ 348 (350)
. ..+++|+.+++++|+
T Consensus 287 ~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp S-TTGGGSCGGGTCSSS
T ss_pred C-ccccccChHHhcCCC
Confidence 6 889999999999997
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=272.67 Aligned_cols=256 Identities=21% Similarity=0.186 Sum_probs=199.4
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.+++.|+++++.+. +..|..+.++++|++|++++|.++...+..|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 56 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 56 PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 46788888888775 45566778888888888888888766556677788888888888888777777777788888888
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCC--------------
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGML-------------- 216 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~-------------- 216 (350)
+++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|. +....+..+..+
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccc
Confidence 88877776666677777777777777777765544455566666666666655 333333333333
Q ss_pred ----------CCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhh
Q 036666 217 ----------TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELG 286 (350)
Q Consensus 217 ----------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 286 (350)
.+|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 3566666666777755556788999999999999999888888899999999999999999988899999
Q ss_pred CCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCccc
Q 036666 287 KLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGE 328 (350)
Q Consensus 287 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 328 (350)
.+++|++|++++|.+++..+..|..+++|+.|++++|.+...
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999999999999987777888999999999999998743
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-34 Score=267.49 Aligned_cols=261 Identities=22% Similarity=0.263 Sum_probs=215.8
Q ss_pred CCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCC-CcccCCCCCCCEEEccCCCCCCCCCccC
Q 036666 86 SALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPI-PEELGQLSLLQFLFLNTNRLSGSIPPQL 164 (350)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l 164 (350)
..+|. +. +++++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|
T Consensus 23 ~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 23 HQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp SSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred ccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc
Confidence 55666 33 78999999999999888999999999999999999987444 5679999999999999999998889999
Q ss_pred CCCCCCCEEEcccCcCCCCCCcc--CCCCCCCCEEeccCCCCCcccCChh-hcCCCCcCeeecccccCcCCCCccccCC-
Q 036666 165 ANLTSLQVLCLQDNLLNGSIPSQ--LGSLVSLQQFRIGGNPYLTGEIPTQ-LGMLTNLTTFGAAATGLSGVIPPTFGNL- 240 (350)
Q Consensus 165 ~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~- 240 (350)
..+++|++|++++|.+.+..+.. +..+++|++|++++|. +....+.. +.++++|++|++++|.+++..+..+..+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 99999999999999998744443 8899999999999998 56665554 8999999999999999887766544332
Q ss_pred ---------------------------------CcCceEeeccc------------------------------------
Q 036666 241 ---------------------------------INLQTLALYDT------------------------------------ 251 (350)
Q Consensus 241 ---------------------------------~~L~~L~l~~~------------------------------------ 251 (350)
++|++|++++|
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 34555555544
Q ss_pred ---------------------------ccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCccc
Q 036666 252 ---------------------------EVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGP 304 (350)
Q Consensus 252 ---------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 304 (350)
.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence 44444556677788888888888888877777888888888888888888877
Q ss_pred CCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 305 IPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 305 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
.+..+..+++|+.|++++|++++..|..|..+++|++|++++|+++
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 7888888888999999999888888888888889999999988874
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-33 Score=269.12 Aligned_cols=275 Identities=23% Similarity=0.201 Sum_probs=180.2
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
.++.++++++.+. +..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 5777777777774 444445777777888888877777 56666777777888888777777666666777777777777
Q ss_pred cCCCCCCCCCc-cCCCCCCCCEEEcccCcCCCCC--CccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeeccccc
Q 036666 152 NTNRLSGSIPP-QLANLTSLQVLCLQDNLLNGSI--PSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATG 228 (350)
Q Consensus 152 ~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 228 (350)
++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|. +....+..+..+++|++|++++|.
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCc
Confidence 77776654443 3666777777777777766443 5556666777777777766 555555666666666666666666
Q ss_pred CcCCCCc-cccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCccc---CChhhhCCCCCCEEeccCccCccc
Q 036666 229 LSGVIPP-TFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGS---IPSELGKLQKLTSLLLWGNTLSGP 304 (350)
Q Consensus 229 ~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~ 304 (350)
+++..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 6655443 356666666666666666665566666666666666666666541 223455666666666666666665
Q ss_pred CCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 305 IPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 305 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
.|..+..+++|+.|++++|++++..|..+..+++| +|++++|+++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 56666666666666666666666666666666666 6666666553
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=6e-35 Score=258.40 Aligned_cols=280 Identities=22% Similarity=0.311 Sum_probs=190.5
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCCCCCCCCC---CCCCCCCCcCceeeCC---------CCCEEEEEcCCCCCCCCCCC
Q 036666 22 SSLSPDGEALLSLISAAGPSAKASSSILSSWN---PSNLTPCSWQGITCSP---------QNRVISLSLPDTFLNLSALP 89 (350)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~---~~~~~~c~~~~~~c~~---------~~~v~~l~l~~~~~~~~~~~ 89 (350)
+...++..|++.|+..+.. ++.++...|. ....++|.|.|+.|.. ..+++.++++++.+ ..+|
T Consensus 23 ~~~~~~~~aLl~~k~~~~~---~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l--~~lp 97 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNA---DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL--PQFP 97 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHH---CCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCC--SSCC
T ss_pred ccCchHHHHHHHHHHhccC---CchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCc--hhcC
Confidence 3567899999999998842 5555667884 3567889999999852 25677777777776 4666
Q ss_pred ccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCC
Q 036666 90 PQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTS 169 (350)
Q Consensus 90 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 169 (350)
..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|..+...
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~-- 173 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST-- 173 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE--
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc--
Confidence 66666777777777777776 66666777777777777777776 566667777777777777766666666554320
Q ss_pred CCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeec
Q 036666 170 LQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALY 249 (350)
Q Consensus 170 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 249 (350)
.....+..+++|++|++++|. +. .++..+..+++|++|++++|.+++ +|..+..+++|++|+++
T Consensus 174 -------------~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 174 -------------DASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp -------------C-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECT
T ss_pred -------------cchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECc
Confidence 001112335555555555554 33 445555666666666666666664 34456677777777777
Q ss_pred ccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 250 DTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
+|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777766544
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.9e-34 Score=274.11 Aligned_cols=276 Identities=23% Similarity=0.196 Sum_probs=251.2
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCc-ccCCCCCCCEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPE-ELGQLSLLQFL 149 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L 149 (350)
..++.++++++.+ ..+|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|++|
T Consensus 278 ~~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCC--SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCcc--CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 4799999999988 57899999999999999999999988888899999999999999998866654 58999999999
Q ss_pred EccCCCCCCCC--CccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccC-ChhhcCCCCcCeeeccc
Q 036666 150 FLNTNRLSGSI--PPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEI-PTQLGMLTNLTTFGAAA 226 (350)
Q Consensus 150 ~L~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~l~~~~~L~~L~l~~ 226 (350)
++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +.... +..+..+++|++|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCC
Confidence 99999998655 6778999999999999999988888899999999999999998 55444 45588999999999999
Q ss_pred ccCcCCCCccccCCCcCceEeecccccccC---CcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcc
Q 036666 227 TGLSGVIPPTFGNLINLQTLALYDTEVFGS---IPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSG 303 (350)
Q Consensus 227 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 303 (350)
|.+++..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 999999899999999999999999998763 23568889999999999999998888999999999999999999999
Q ss_pred cCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 304 PIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 304 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
..|..+..++.| .|++++|++++..|..+..+++|++|++++|+++
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 999999999999 9999999999888888999999999999999863
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-33 Score=268.30 Aligned_cols=130 Identities=23% Similarity=0.296 Sum_probs=69.0
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
+++.++++++.+. +..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 33 ~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 33 STKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 5566666666654 333335555666666666666665555555555666666666666555555555555555555555
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEcccCcCCC-CCCccCCCCCCCCEEeccCC
Q 036666 152 NTNRLSGSIPPQLANLTSLQVLCLQDNLLNG-SIPSQLGSLVSLQQFRIGGN 202 (350)
Q Consensus 152 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n 202 (350)
++|.+++..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 5555554443444455555555555554443 23444444444444444443
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.6e-33 Score=245.89 Aligned_cols=280 Identities=22% Similarity=0.280 Sum_probs=197.5
Q ss_pred CCcCceeeCC----------CCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCC
Q 036666 60 CSWQGITCSP----------QNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSS 129 (350)
Q Consensus 60 c~~~~~~c~~----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 129 (350)
|.+..+.|.. ...++.++++++.+. +..+..+.++++|++|++++|.+++..|..|..+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 5566666642 135677788777774 33344677778888888888887777677777788888888888
Q ss_pred CCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCC--CCCccCCCCCCCCEEeccCCCCCcc
Q 036666 130 NSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNG--SIPSQLGSLVSLQQFRIGGNPYLTG 207 (350)
Q Consensus 130 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~ 207 (350)
|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|. +..
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITT 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCS
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-ccc
Confidence 8777 4444433 678888888887776666667777888888888877743 456667777888888888776 332
Q ss_pred cCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhC
Q 036666 208 EIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGK 287 (350)
Q Consensus 208 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 287 (350)
++..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 -l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 33222 267888888888877777777788888888888888877766667777788888888888877 66777777
Q ss_pred CCCCCEEeccCccCcccCCccCcC------CCCCCEEEccCCcCcc--cCCccccCCCCCCEEeCcCCC
Q 036666 288 LQKLTSLLLWGNTLSGPIPAELSN------CSALVVLDASANDLSG--ELPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 288 ~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 348 (350)
+++|++|++++|.+++..+..|.. .+.++.+++++|.+.. ..|..|..+++++.+++++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888888887665555543 3667788888887652 455677777888888888774
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.9e-33 Score=246.95 Aligned_cols=279 Identities=22% Similarity=0.261 Sum_probs=206.8
Q ss_pred CCcCceeeCCC----------CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCC
Q 036666 60 CSWQGITCSPQ----------NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSS 129 (350)
Q Consensus 60 c~~~~~~c~~~----------~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 129 (350)
|.|..+.|... ..++.++++++.+. +..+..+.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 56766666421 25777888877774 33345677788888888888888777677777888888888888
Q ss_pred CCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCC--CCCccCCCCCCCCEEeccCCCCCcc
Q 036666 130 NSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNG--SIPSQLGSLVSLQQFRIGGNPYLTG 207 (350)
Q Consensus 130 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~ 207 (350)
|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|. +..
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTG 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSS
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCc
Confidence 8777 4454433 678888888888776655667778888888888887742 455666666 78888888776 333
Q ss_pred cCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhC
Q 036666 208 EIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGK 287 (350)
Q Consensus 208 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 287 (350)
++..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 333322 68888888888888877778888888999999988887777777888888999999988888 67777888
Q ss_pred CCCCCEEeccCccCcccCCccCcC------CCCCCEEEccCCcCc--ccCCccccCCCCCCEEeCcCCC
Q 036666 288 LQKLTSLLLWGNTLSGPIPAELSN------CSALVVLDASANDLS--GELPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 288 ~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 348 (350)
+++|++|++++|.+++..+..+.. .+.|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888999999988888766666654 367888899888876 5666778888889999888875
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-33 Score=256.62 Aligned_cols=266 Identities=23% Similarity=0.228 Sum_probs=174.5
Q ss_pred CCEEEEEcCCCCCCCCCCCcc-CCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQ-LSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFL 149 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 149 (350)
..++.++++++.+ +.+|.. +..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|
T Consensus 45 ~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 3567788877776 455554 5778899999999999887777788889999999999999887777788889999999
Q ss_pred EccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCC-----------
Q 036666 150 FLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTN----------- 218 (350)
Q Consensus 150 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~----------- 218 (350)
++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +.... +..+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccc
Confidence 999998885555557888999999999998887777778888999999998887 33321 222333
Q ss_pred -----------------------------cCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCe
Q 036666 219 -----------------------------LTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRN 269 (350)
Q Consensus 219 -----------------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 269 (350)
|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 33333333333321 23445555555555555555544555555555555
Q ss_pred EEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 270 LYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 270 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|.+++. + +..+++|++|++++|++
T Consensus 277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp EECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred EECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCc
Confidence 5555555552 3333444555555555555555 3344444555555555555555532 2 44555666666666654
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=252.97 Aligned_cols=279 Identities=23% Similarity=0.268 Sum_probs=228.5
Q ss_pred CCCCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCC
Q 036666 57 LTPCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPI 136 (350)
Q Consensus 57 ~~~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 136 (350)
...|.|.++ |+ .+++.+ ..+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..
T Consensus 27 ~~~C~~~~~-c~---------~~~~~l--~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 27 SLSCDRNGI-CK---------GSSGSL--NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp CCEECTTSE-EE---------CCSTTC--SSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCCCCCeE-ee---------CCCCCc--cccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence 355777664 43 344444 56777665 58999999999999777778999999999999999999887
Q ss_pred CcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCC-ccCCCCCCCCEEeccCCCCCcccCChhhcC
Q 036666 137 PEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIP-SQLGSLVSLQQFRIGGNPYLTGEIPTQLGM 215 (350)
Q Consensus 137 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 215 (350)
+..|.++++|++|++++|++++..+..+..+++|++|++++|++....+ ..+..+++|++|++++|.......+..+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 8889999999999999999996555558999999999999999985444 478899999999999985356666778899
Q ss_pred CCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhh---hCCCCCC
Q 036666 216 LTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSEL---GKLQKLT 292 (350)
Q Consensus 216 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~ 292 (350)
+++|++|++++|.+++..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+ ...+.++
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 9999999999999998889999999999999999999854433345568999999999999986544333 3467789
Q ss_pred EEeccCccCcc----cCCccCcCCCCCCEEEccCCcCcccCCcc-ccCCCCCCEEeCcCCCCC
Q 036666 293 SLLLWGNTLSG----PIPAELSNCSALVVLDASANDLSGELPGD-LGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 293 ~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 350 (350)
.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. |..+++|++|++++|+++
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 99999998876 36777889999999999999999 55554 689999999999999874
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=275.27 Aligned_cols=288 Identities=24% Similarity=0.250 Sum_probs=221.1
Q ss_pred CCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCC-CcCCCCCCCCCeEeCCCCCCCCCCCc
Q 036666 60 CSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGII-PPSFGQLTHLRLLDLSSNSLSGPIPE 138 (350)
Q Consensus 60 c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~ 138 (350)
|++..|.+ -...++.+++++|.+. +..+..+.++++|++|++++|...+.+ |..|.++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45555555 3467889999998886 556778888889999999888555444 67788888899999998888877788
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCcc--CCCCCCCCEEEcccCcCCCCCC-ccCCCCCCCCEEeccCCCCCcccCChhhcC
Q 036666 139 ELGQLSLLQFLFLNTNRLSGSIPPQ--LANLTSLQVLCLQDNLLNGSIP-SQLGSLVSLQQFRIGGNPYLTGEIPTQLGM 215 (350)
Q Consensus 139 ~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 215 (350)
.|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|. +....+..+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHccc
Confidence 8888889999999888888765554 7888889999998888876544 567888888888888887 44444443333
Q ss_pred C--CC------------------------------cCeeecccccCcCCCCccccC------------------------
Q 036666 216 L--TN------------------------------LTTFGAAATGLSGVIPPTFGN------------------------ 239 (350)
Q Consensus 216 ~--~~------------------------------L~~L~l~~~~~~~~~~~~l~~------------------------ 239 (350)
+ ++ |+.|++++|.+++..+..+..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 2 33 566666666554433322211
Q ss_pred --------------CCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccC
Q 036666 240 --------------LINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPI 305 (350)
Q Consensus 240 --------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 305 (350)
.++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+.+..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 256778888888777777777888888888888888888777788888888999999999888777
Q ss_pred CccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 306 PAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 306 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|+++
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 888888889999999999888777777888899999999988864
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-33 Score=267.53 Aligned_cols=265 Identities=22% Similarity=0.214 Sum_probs=176.6
Q ss_pred CEEEEEcCCCCCCCCCCCc-cCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 72 RVISLSLPDTFLNLSALPP-QLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.++.++++++.+ +.+|+ .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|+
T Consensus 52 ~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 52 NQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 456777777776 44555 457788999999999999988888899999999999999999988888889999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeee-------
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFG------- 223 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~------- 223 (350)
+++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +.... ++.+++|+.|+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCccc
Confidence 99999986666667899999999999999988888888999999999999987 44322 22333333333
Q ss_pred ---------------------------------cccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeE
Q 036666 224 ---------------------------------AAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNL 270 (350)
Q Consensus 224 ---------------------------------l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 270 (350)
+++|.+++ +..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 33333332 1334455555555555555555545555555555555
Q ss_pred EccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 271 YLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 271 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. + +..+++|+.|++++|++
T Consensus 284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred ECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCC
Confidence 555555553 3333444555555555555555 3444444555555555555555532 1 34455566666666654
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4e-32 Score=240.84 Aligned_cols=268 Identities=22% Similarity=0.285 Sum_probs=234.7
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
+++.++++++.+ ..+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++
T Consensus 32 ~l~~l~~~~~~l--~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGL--EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCC--CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCc--cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 457788888877 56777665 78999999999999887778999999999999999999888999999999999999
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCc-ccCChhhcCCCCcCeeecccccCc
Q 036666 152 NTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLT-GEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 152 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. +..+..+..+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999998 5555444 799999999999998777789999999999999998322 356678899999999999999998
Q ss_pred CCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCc
Q 036666 231 GVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELS 310 (350)
Q Consensus 231 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 310 (350)
.. |..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+.
T Consensus 185 ~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 TI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp SC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred cC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 54 44443 79999999999998888889999999999999999999877778999999999999999999 7888899
Q ss_pred CCCCCCEEEccCCcCcccCCccccC------CCCCCEEeCcCCCCC
Q 036666 311 NCSALVVLDASANDLSGELPGDLGK------LVLLEQLHLSDNMLT 350 (350)
Q Consensus 311 ~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~ 350 (350)
.+++|+.|++++|++++..+..|+. .++++.|++++|+++
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 9999999999999999777777754 378999999999873
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-32 Score=264.95 Aligned_cols=276 Identities=20% Similarity=0.219 Sum_probs=193.2
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.+++.++++++.+. +..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 47899999999885 44445688889999999999999888888888899999999999998865556788999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhc--CCCCcCeeeccccc
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLG--MLTNLTTFGAAATG 228 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~--~~~~L~~L~l~~~~ 228 (350)
+++|.+++..+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|. +.+..+..+. .+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCc
Confidence 99999987777788899999999999999888888888888999999998887 5554444433 45677777777777
Q ss_pred CcCCCCccccCC---------------------------Cc--------------------------CceEeeccccccc
Q 036666 229 LSGVIPPTFGNL---------------------------IN--------------------------LQTLALYDTEVFG 255 (350)
Q Consensus 229 ~~~~~~~~l~~~---------------------------~~--------------------------L~~L~l~~~~~~~ 255 (350)
+++..+..+..+ ++ |++|++++|.+.+
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 766555444322 23 4444444444444
Q ss_pred CCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcc-----cCCc----cCcCCCCCCEEEccCCcCc
Q 036666 256 SIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSG-----PIPA----ELSNCSALVVLDASANDLS 326 (350)
Q Consensus 256 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-----~~~~----~~~~~~~L~~L~l~~n~l~ 326 (350)
..+..+..+++|++|++++|.+++..|..+..+++|++|++++|...+ .+|. .+..+++|+.|++++|.++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 444444444445555554444444444444444444444444433221 1111 4556677777777788887
Q ss_pred ccCCccccCCCCCCEEeCcCCC
Q 036666 327 GELPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 327 ~~~~~~~~~l~~L~~L~l~~n~ 348 (350)
+..+..|..+++|++|++++|.
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCB
T ss_pred CCChhHhccccCCcEEECCCCc
Confidence 7777777888888888887775
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-33 Score=266.34 Aligned_cols=275 Identities=25% Similarity=0.247 Sum_probs=190.5
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
..++.++++++.+. +..|..+.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 47999999999986 55567899999999999999999988888999999999999999999977777799999999999
Q ss_pred ccCCCCCC-CCCccCCCCCCCCEEEcccCcCCCCC-CccCCCCCCCCEEeccCCCCCcccCChhhcC-------------
Q 036666 151 LNTNRLSG-SIPPQLANLTSLQVLCLQDNLLNGSI-PSQLGSLVSLQQFRIGGNPYLTGEIPTQLGM------------- 215 (350)
Q Consensus 151 L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~------------- 215 (350)
+++|.+++ ..|..++++++|++|++++|.+.+.+ +..+..+++|++|++++|. +.+..+..+..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccCc
Confidence 99999986 35677899999999999999844344 4678889999999999988 55555555444
Q ss_pred -----------CCCcCeeecccccCcCCC--C-ccccCC-----------------------------------------
Q 036666 216 -----------LTNLTTFGAAATGLSGVI--P-PTFGNL----------------------------------------- 240 (350)
Q Consensus 216 -----------~~~L~~L~l~~~~~~~~~--~-~~l~~~----------------------------------------- 240 (350)
+++|++|++++|.+++.. + .....+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 556666666666665421 0 000001
Q ss_pred ----------------------------------------------CcCceEeecccccccCCcccc-cCCCCCCeEEcc
Q 036666 241 ----------------------------------------------INLQTLALYDTEVFGSIPPEI-GLCSELRNLYLH 273 (350)
Q Consensus 241 ----------------------------------------------~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~ 273 (350)
.+|+.|++++|.+. .+|..+ ..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 12333333333332 222222 345666666666
Q ss_pred CCcCcccCCh---hhhCCCCCCEEeccCccCcccCC--ccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCC
Q 036666 274 MNKLTGSIPS---ELGKLQKLTSLLLWGNTLSGPIP--AELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 274 ~n~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 348 (350)
+|++++..|. .++.+++|++|++++|++++..+ ..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 6666654432 24556666666666666654321 33556666777777777666 456566666666666666665
Q ss_pred C
Q 036666 349 L 349 (350)
Q Consensus 349 l 349 (350)
+
T Consensus 422 l 422 (549)
T 2z81_A 422 I 422 (549)
T ss_dssp C
T ss_pred c
Confidence 5
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.4e-32 Score=240.79 Aligned_cols=267 Identities=27% Similarity=0.330 Sum_probs=233.4
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
+++.++++++.+ ..+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l--~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGL--KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCC--SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCc--cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 457889998887 57777664 79999999999999888888999999999999999999888899999999999999
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCC-cccCChhhcCCCCcCeeecccccCc
Q 036666 152 NTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYL-TGEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 152 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
++|.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+. .+..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999998 5555554 89999999999999777777999999999999999832 13556667777 9999999999998
Q ss_pred CCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCc
Q 036666 231 GVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELS 310 (350)
Q Consensus 231 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 310 (350)
+ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++. .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 6 444443 79999999999998888888999999999999999999877778999999999999999999 7888899
Q ss_pred CCCCCCEEEccCCcCcccCCccccC------CCCCCEEeCcCCCCC
Q 036666 311 NCSALVVLDASANDLSGELPGDLGK------LVLLEQLHLSDNMLT 350 (350)
Q Consensus 311 ~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~ 350 (350)
.+++|+.|++++|.+++..+..|+. .++|+.|++++|+++
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 9999999999999999777777765 367999999999874
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-33 Score=271.38 Aligned_cols=267 Identities=19% Similarity=0.281 Sum_probs=183.5
Q ss_pred CCEEEEEcCCCCCCCCC-----------------CCccCC--CCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCC
Q 036666 71 NRVISLSLPDTFLNLSA-----------------LPPQLS--SLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNS 131 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~ 131 (350)
..++.++++++.+. +. +|..+. ++++|++|++++|.+.+.+|..|.++++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 206 TKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred cCCCEEECcCCccc-cccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 47899999999986 43 899988 99999999999999999999999999999999999998
Q ss_pred -CCC-CCCcccCCC------CCCCEEEccCCCCCCCCCc--cCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccC
Q 036666 132 -LSG-PIPEELGQL------SLLQFLFLNTNRLSGSIPP--QLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGG 201 (350)
Q Consensus 132 -~~~-~~~~~~~~l------~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 201 (350)
+++ .+|..+..+ ++|++|++++|+++ .+|. .++.+++|++|++++|.+.+.+| .+..+++|++|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 887 678777665 88999999999888 7777 78888899999998888886677 666777777777777
Q ss_pred CCCCcccCChhhcCCCC-cCeeecccccCcCCCCccccCCC--cCceEeecccccccCCccccc-------CCCCCCeEE
Q 036666 202 NPYLTGEIPTQLGMLTN-LTTFGAAATGLSGVIPPTFGNLI--NLQTLALYDTEVFGSIPPEIG-------LCSELRNLY 271 (350)
Q Consensus 202 n~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~ 271 (350)
|. +. .++..+..+++ |++|++++|.++ .+|..+...+ +|+.|++++|.+.+..|..+. .+++|++|+
T Consensus 363 N~-l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 363 NQ-IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SE-EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred Cc-cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 75 33 55555666666 666666666666 4455554433 566666666665555554444 444555555
Q ss_pred ccCCcCcccCChhhhCCC-------------------------------CCCEEeccCccCcccCCccCc--CCCCCCEE
Q 036666 272 LHMNKLTGSIPSELGKLQ-------------------------------KLTSLLLWGNTLSGPIPAELS--NCSALVVL 318 (350)
Q Consensus 272 l~~n~l~~~~~~~~~~~~-------------------------------~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L 318 (350)
+++|.+++..+..+..++ +|++|++++|+++ .+|..+. .+++|+.|
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE
Confidence 555555522222233344 4555555555554 3444443 55555555
Q ss_pred EccCCcCcccCCccccCCCCCCEEeCc
Q 036666 319 DASANDLSGELPGDLGKLVLLEQLHLS 345 (350)
Q Consensus 319 ~l~~n~l~~~~~~~~~~l~~L~~L~l~ 345 (350)
++++|++++ +|..+..+++|++|+++
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 555555554 55555555555555553
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-32 Score=259.68 Aligned_cols=126 Identities=26% Similarity=0.254 Sum_probs=101.4
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
..++.+++++|.+. +..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 57899999999985 544568999999999999999999888889999999999999999998 55655 789999999
Q ss_pred ccCCCCCC-CCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCC--CEEeccCCC
Q 036666 151 LNTNRLSG-SIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSL--QQFRIGGNP 203 (350)
Q Consensus 151 L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~ 203 (350)
+++|++++ ..|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 99999986 3467889999999999999887643 22333333 555555554
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-32 Score=269.11 Aligned_cols=273 Identities=21% Similarity=0.211 Sum_probs=224.7
Q ss_pred CCEEEEEcCCCCCCCCCC-CccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcc--cCCCCCCC
Q 036666 71 NRVISLSLPDTFLNLSAL-PPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEE--LGQLSLLQ 147 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~ 147 (350)
..++.|+++++... ..+ |..+.++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..+.. |.++++|+
T Consensus 48 ~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 48 EQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CSCSEEEECTTCCC-CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred ccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 47889999998654 555 667899999999999999999888999999999999999999998766654 88999999
Q ss_pred EEEccCCCCCCCCC-ccCCCCCCCCEEEcccCcCCCCCCccCC--------------------------CCC------CC
Q 036666 148 FLFLNTNRLSGSIP-PQLANLTSLQVLCLQDNLLNGSIPSQLG--------------------------SLV------SL 194 (350)
Q Consensus 148 ~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~--------------------------~l~------~L 194 (350)
+|++++|.+++..+ ..|+++++|++|++++|.+.+..+..+. .++ .|
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 99999999986654 5688999999999999887655443332 222 27
Q ss_pred CEEeccCCCCCcccCChhh------------------------------------cC--CCCcCeeecccccCcCCCCcc
Q 036666 195 QQFRIGGNPYLTGEIPTQL------------------------------------GM--LTNLTTFGAAATGLSGVIPPT 236 (350)
Q Consensus 195 ~~L~l~~n~~~~~~~~~~l------------------------------------~~--~~~L~~L~l~~~~~~~~~~~~ 236 (350)
+.|++++|. +....+..+ .. .++|+.|++++|.+.+..+..
T Consensus 207 ~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 207 EILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp SEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 788887775 332222111 11 268999999999999988999
Q ss_pred ccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCC
Q 036666 237 FGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALV 316 (350)
Q Consensus 237 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 316 (350)
+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 99999999999999999988888999999999999999999988888999999999999999999988888899999999
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 317 VLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 317 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
.|++++|.+++. ..+++|+.|++++|+++
T Consensus 366 ~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 366 TLDLRDNALTTI-----HFIPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEEEETCCSCCC-----SSCCSCSEEEEESCCCC
T ss_pred EEECCCCCCCcc-----cCCCCcchhccCCCCcc
Confidence 999999999842 23667777777777653
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.1e-32 Score=258.09 Aligned_cols=140 Identities=19% Similarity=0.087 Sum_probs=111.1
Q ss_pred hhhcCCCCcCeeecccccCcCCCC-ccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcc-cCChhhhCC
Q 036666 211 TQLGMLTNLTTFGAAATGLSGVIP-PTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTG-SIPSELGKL 288 (350)
Q Consensus 211 ~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~ 288 (350)
..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 345567788888888888887766 577888888888888888877777778888888888888888876 367777788
Q ss_pred CCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 289 QKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 289 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|+++
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 88888888888888777777888888888888888888777777888888888888888764
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.9e-32 Score=255.91 Aligned_cols=109 Identities=25% Similarity=0.289 Sum_probs=66.8
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEc
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFL 151 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 151 (350)
.++.++++++.+. +..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..++++++|++|++
T Consensus 53 ~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 53 ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 4566666666553 333344566666666666666666555556666666666666666666444445666667777777
Q ss_pred cCCCCCC-CCCccCCCCCCCCEEEcccCcCC
Q 036666 152 NTNRLSG-SIPPQLANLTSLQVLCLQDNLLN 181 (350)
Q Consensus 152 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~ 181 (350)
++|.+++ .+|..++++++|++|++++|.+.
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 7766664 34666666777777777666543
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-31 Score=257.35 Aligned_cols=132 Identities=24% Similarity=0.292 Sum_probs=115.8
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
..++.|++++|.+. +..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++.+..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 37899999999995 44445899999999999999999988888999999999999999999977777899999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCC-CCCccCCCCCCCCEEeccCCC
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNG-SIPSQLGSLVSLQQFRIGGNP 203 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~ 203 (350)
+++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 99999997777779999999999999999875 356777888888888888775
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=255.20 Aligned_cols=107 Identities=25% Similarity=0.325 Sum_probs=78.8
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.+++.++++++.+. +..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 46778888888774 444456777888888888888887776777788888888888888777 44444 677888888
Q ss_pred ccCCCCCC-CCCccCCCCCCCCEEEcccCcCC
Q 036666 151 LNTNRLSG-SIPPQLANLTSLQVLCLQDNLLN 181 (350)
Q Consensus 151 L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~ 181 (350)
+++|.+++ .+|..++.+++|++|++++|.+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccc
Confidence 88887775 35677777777777777777664
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=255.82 Aligned_cols=124 Identities=23% Similarity=0.257 Sum_probs=111.2
Q ss_pred EEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccC
Q 036666 74 ISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNT 153 (350)
Q Consensus 74 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 153 (350)
+.++++++.+ ..+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l--~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGL--IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCC--SSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCc--cccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 5789999988 56888776 8999999999999987778899999999999999999988889999999999999999
Q ss_pred CCCCCCCCccCCCCCCCCEEEcccCcCCC-CCCccCCCCCCCCEEeccCCCC
Q 036666 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNG-SIPSQLGSLVSLQQFRIGGNPY 204 (350)
Q Consensus 154 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~ 204 (350)
|+++ .+|.. .+++|++|++++|.+.+ .+|..++.+++|++|++++|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 9999 56655 89999999999999987 4678999999999999998873
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-31 Score=256.13 Aligned_cols=276 Identities=22% Similarity=0.224 Sum_probs=148.5
Q ss_pred EEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCC-----CCCc----ccCCC
Q 036666 73 VISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSG-----PIPE----ELGQL 143 (350)
Q Consensus 73 v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~-----~~~~----~~~~l 143 (350)
++.++++++.+. +..+..+..+++|++|++++|.+.+..+..|.++++|++|+++++...+ .+|. .|..+
T Consensus 250 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 250 LTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 677777777664 4445566677777777777777666555555555555555554432211 1111 33344
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEcc----------------------------cCcCCCCCCccCCCCCCCC
Q 036666 144 SLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQ----------------------------DNLLNGSIPSQLGSLVSLQ 195 (350)
Q Consensus 144 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~----------------------------~n~~~~~~~~~~~~l~~L~ 195 (350)
++|++|++++|.+++..+..|..+++|++|+++ +|++.+..+..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 444444444444444333333333333333332 2333333344455555555
Q ss_pred EEeccCCCCCcccC-ChhhcCCCCcCeeecccccCc--------------------------CCCCccccCCCcCceEee
Q 036666 196 QFRIGGNPYLTGEI-PTQLGMLTNLTTFGAAATGLS--------------------------GVIPPTFGNLINLQTLAL 248 (350)
Q Consensus 196 ~L~l~~n~~~~~~~-~~~l~~~~~L~~L~l~~~~~~--------------------------~~~~~~l~~~~~L~~L~l 248 (350)
+|++++|. +.+.+ ...+.++++|++|++++|.++ +..|..+..+++|+.|++
T Consensus 409 ~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSC-CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCc-CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 55555555 33222 234444444444444444433 234455556666666666
Q ss_pred cccccccCCcccccCCCCCCeEEccCCcCcccCC--------hhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEc
Q 036666 249 YDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIP--------SELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDA 320 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 320 (350)
++|.+.+..+..+..+++|++|++++|.+++..+ ..+.++++|++|++++|++....+..|.++++|+.|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 6666665555556666666666666666653211 12455666666666666666444445666677777777
Q ss_pred cCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 321 SANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
++|++++..+..|..+++|+.|++++|+++
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 777776555555666667777777776653
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=254.32 Aligned_cols=134 Identities=23% Similarity=0.229 Sum_probs=86.2
Q ss_pred CCcCeeecccccCcCCCC-ccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCc-ccCChhhhCCCCCCEE
Q 036666 217 TNLTTFGAAATGLSGVIP-PTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLT-GSIPSELGKLQKLTSL 294 (350)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L 294 (350)
++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 333333333333333322 34555566666666666665555666666677777777777665 3566666777777777
Q ss_pred eccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 295 LLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 295 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
++++|++++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|+++
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 77777777666777777777777777777777666666777777777777777653
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-31 Score=252.90 Aligned_cols=145 Identities=22% Similarity=0.234 Sum_probs=121.0
Q ss_pred EEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccC
Q 036666 74 ISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNT 153 (350)
Q Consensus 74 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 153 (350)
+.++++++.+ ..+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 34 ~~l~ls~~~L--~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNL--THVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCC--CSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCC--ccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 7899999988 56888765 8999999999999988888999999999999999999988899999999999999999
Q ss_pred CCCCCCCCccCCCCCCCCEEEcccCcCCCC-CCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCc--CeeecccccC
Q 036666 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGS-IPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNL--TTFGAAATGL 229 (350)
Q Consensus 154 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L--~~L~l~~~~~ 229 (350)
|+++ .+|.. .+++|++|++++|++.+. .|..+..+++|++|++++|. +... .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccC---chhhhhhceeeEEEeecccc
Confidence 9998 56655 899999999999999863 46889999999999999998 4332 22233333 5555555555
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.98 E-value=1.4e-30 Score=240.64 Aligned_cols=246 Identities=22% Similarity=0.221 Sum_probs=207.9
Q ss_pred EEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCC
Q 036666 75 SLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTN 154 (350)
Q Consensus 75 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 154 (350)
.++.++..+ ..+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 58 ~v~c~~~~l--~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 58 KVVCTRRGL--SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp EEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEECCCCc--CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 344444444 56777665 78999999999999888999999999999999999999888889999999999999999
Q ss_pred CCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCC
Q 036666 155 RLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIP 234 (350)
Q Consensus 155 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 234 (350)
.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|..+.......+..+++|++|++++|.+++. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 999777777999999999999999998777778999999999999986645555566788889999999999988764 3
Q ss_pred ccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCC
Q 036666 235 PTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSA 314 (350)
Q Consensus 235 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 314 (350)
.+..+++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 4778888888888888888877888888888888888888888777778888888888888888888777777778888
Q ss_pred CCEEEccCCcCc
Q 036666 315 LVVLDASANDLS 326 (350)
Q Consensus 315 L~~L~l~~n~l~ 326 (350)
|+.|++++|.+.
T Consensus 292 L~~L~L~~Np~~ 303 (452)
T 3zyi_A 292 LVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEccCCCcC
Confidence 888888888654
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=1.7e-30 Score=250.03 Aligned_cols=143 Identities=24% Similarity=0.265 Sum_probs=127.3
Q ss_pred CCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCC
Q 036666 86 SALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLA 165 (350)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 165 (350)
..+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+.++.+.+|.++++|++|+|++|++++..+..|.
T Consensus 44 ~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 44 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred CccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 67888775 5899999999999988888999999999999999999988888999999999999999999977777899
Q ss_pred CCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCc
Q 036666 166 NLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 166 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
++++|++|++++|++++..+..++.+++|++|++++|.+.....+..++.+++|++|++++|.++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999999999999998777789999999999999998444456788888888998888777553
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=2.2e-31 Score=233.57 Aligned_cols=253 Identities=24% Similarity=0.249 Sum_probs=204.7
Q ss_pred CCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCC--C
Q 036666 59 PCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGP--I 136 (350)
Q Consensus 59 ~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~--~ 136 (350)
.|.|.++.|.. +.+ ..+|..+. +++++|++++|.++...+..|.++++|++|++++|.+... .
T Consensus 6 ~C~~~~l~c~~-----------~~l--~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 6 SCSGTEIRCNS-----------KGL--TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EEETTEEECCS-----------SCC--SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eeCCCEEEcCC-----------CCc--ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 36677776653 223 55666554 6899999999999865556688999999999999998733 2
Q ss_pred CcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCC-ccCCCCCCCCEEeccCCCCCcccCChhhcC
Q 036666 137 PEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIP-SQLGSLVSLQQFRIGGNPYLTGEIPTQLGM 215 (350)
Q Consensus 137 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 215 (350)
+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|. +....+..+..
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 148 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNG 148 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTT
T ss_pred ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhccc
Confidence 556778899999999999988 466678889999999999999886554 578888999999999988 66677777888
Q ss_pred CCCcCeeecccccCcC-CCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEE
Q 036666 216 LTNLTTFGAAATGLSG-VIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSL 294 (350)
Q Consensus 216 ~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 294 (350)
+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 8899999999988876 567778888888888888888887777788888888888888888887666677888888888
Q ss_pred eccCccCcccCCccCcCCC-CCCEEEccCCcCccc
Q 036666 295 LLWGNTLSGPIPAELSNCS-ALVVLDASANDLSGE 328 (350)
Q Consensus 295 ~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~ 328 (350)
++++|.+.+..+..+..++ +|+.|++++|.+++.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 8888888888888888774 888888888888643
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=3.1e-31 Score=240.54 Aligned_cols=252 Identities=19% Similarity=0.210 Sum_probs=200.4
Q ss_pred CCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEE
Q 036666 94 SLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVL 173 (350)
Q Consensus 94 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 173 (350)
.++++++|+++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999986655557889999999999999998777899999999999999999998888889999999999
Q ss_pred EcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCC-------------
Q 036666 174 CLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNL------------- 240 (350)
Q Consensus 174 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~------------- 240 (350)
++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++.....+..+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 999999996655667899999999999998 677777889999999999999999886532222221
Q ss_pred ------------------------CcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEec
Q 036666 241 ------------------------INLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLL 296 (350)
Q Consensus 241 ------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 296 (350)
++|+.|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 2344455555554332 34666777888888888877766777777888888888
Q ss_pred cCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 297 WGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 297 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
++|++++ ++..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 8888774 4445566788888888888777 55666777788888888888764
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.98 E-value=2.6e-31 Score=230.70 Aligned_cols=277 Identities=26% Similarity=0.248 Sum_probs=229.0
Q ss_pred eeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCC
Q 036666 65 ITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLS 144 (350)
Q Consensus 65 ~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 144 (350)
+.|.... .+.++.++.++ ..+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.+++
T Consensus 6 C~C~~~~-~~~~~c~~~~l--~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 6 CVCYNEP-KVTTSCPQQGL--QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp CEEECSS-SCEEECCSSCC--SSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred ceECCCC-CeEEEcCcCCc--ccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 3454322 26677777766 5667655 37999999999999988878899999999999999999988888999999
Q ss_pred CCCEEEccCCC-CCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeee
Q 036666 145 LLQFLFLNTNR-LSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFG 223 (350)
Q Consensus 145 ~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~ 223 (350)
+|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEE
Confidence 99999999997 776668889999999999999999998888889999999999999998 6666667789999999999
Q ss_pred cccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcc
Q 036666 224 AAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSG 303 (350)
Q Consensus 224 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 303 (350)
+++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 99999998777789999999999999999988888899999999999999999997666778999999999999999875
Q ss_pred cCCccCcCCCCCCEEEccCCcCcccCCccccC--CCCCCEEeCcCCC
Q 036666 304 PIPAELSNCSALVVLDASANDLSGELPGDLGK--LVLLEQLHLSDNM 348 (350)
Q Consensus 304 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~ 348 (350)
..+.. .-...++.+..+.+.+....|..+.+ +..++..++++|+
T Consensus 240 ~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 240 DCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp SGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred CCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 32211 00122344456677777778877654 4667777777774
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-30 Score=232.34 Aligned_cols=261 Identities=23% Similarity=0.339 Sum_probs=173.1
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.+++.++++++.+ ..++. +..+++|++|++++|.++. + +.+..+++|++|++++|.+.+. +. +..+++|++|+
T Consensus 66 ~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 66 TNLEYLNLNGNQI--TDISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred CCccEEEccCCcc--ccchh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 4678888888776 34444 7777888888888887764 2 3477778888888888877643 22 66777777777
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCC--------------------
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIP-------------------- 210 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-------------------- 210 (350)
+++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|. +....+
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCC
Confidence 77775443333 25666666666666665543221 4455555555555554 221111
Q ss_pred hhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCC
Q 036666 211 TQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQK 290 (350)
Q Consensus 211 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 290 (350)
..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +.+..+++|++|++++|.+++. ..+..+++
T Consensus 215 ~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~ 288 (347)
T 4fmz_A 215 TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQ 288 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred chhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCC
Confidence 115566677777777777665433 66777777777777776543 3566777888888888877743 34677788
Q ss_pred CCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 291 LTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 291 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
|++|++++|.+.+..+..+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888877777777788888888888888876555 677888888888888774
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.8e-30 Score=230.60 Aligned_cols=261 Identities=26% Similarity=0.372 Sum_probs=203.9
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
..++.++++++.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ + ..+..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i~--~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVA--SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCC--CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred ccccEEEEeCCccc--cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEE
Confidence 47899999998884 454 478899999999999999854 33 8999999999999999985 3 4689999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCc
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
+++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|. .....+ +..+++|++|++++|.++
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc
Confidence 999999854 33 8899999999999997664444 48899999999999997 443332 788899999999998876
Q ss_pred CCCC--------------------ccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCC
Q 036666 231 GVIP--------------------PTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQK 290 (350)
Q Consensus 231 ~~~~--------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 290 (350)
+..+ ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ + ..+..+++
T Consensus 191 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~ 266 (347)
T 4fmz_A 191 DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTK 266 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTT
T ss_pred ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCC
Confidence 5432 114455666666666666644332 6667777777777777764 2 35677788
Q ss_pred CCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 291 LTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 291 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
|++|++++|.+.+. ..+..+++|+.|++++|.+++..|..+..+++|++|++++|+++
T Consensus 267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 88888888888754 35677888888888888888777788888888999999888874
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.7e-31 Score=251.53 Aligned_cols=277 Identities=23% Similarity=0.263 Sum_probs=205.6
Q ss_pred CCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCc
Q 036666 59 PCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPE 138 (350)
Q Consensus 59 ~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 138 (350)
.|.|.++ |+ .+++.+ ..+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c~---------~~~~~l--~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CD---------GRSRSF--TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EE---------CTTSCC--SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EE---------CCCCcc--ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3778776 64 334444 56777665 7999999999999988888999999999999999999988888
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCC-CCCccCCCCCCCCEEeccCCCCCcccCChhhcCCC
Q 036666 139 ELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNG-SIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLT 217 (350)
Q Consensus 139 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~ 217 (350)
.|.++++|++|++++|.+++..+..|+.+++|++|++++|.+.+ ..+..+..+++|++|++++|.......+..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999998777779999999999999999986 35678999999999999999744444456899999
Q ss_pred CcCeeecccccCcCCCCccccCCC------------------------cCceEeecccccccCC--c-ccccC-------
Q 036666 218 NLTTFGAAATGLSGVIPPTFGNLI------------------------NLQTLALYDTEVFGSI--P-PEIGL------- 263 (350)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~l~~~~------------------------~L~~L~l~~~~~~~~~--~-~~~~~------- 263 (350)
+|++|++++|.+++..|..++.++ +|++|++++|.+.+.. + .....
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 999999999999988777776654 4555555555544321 0 00000
Q ss_pred --------------------------------------------------------------------------------
Q 036666 264 -------------------------------------------------------------------------------- 263 (350)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (350)
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence
Q ss_pred CCCCCeEEccCCcCcccCChhh-hCCCCCCEEeccCccCcccCC---ccCcCCCCCCEEEccCCcCcccCC--ccccCCC
Q 036666 264 CSELRNLYLHMNKLTGSIPSEL-GKLQKLTSLLLWGNTLSGPIP---AELSNCSALVVLDASANDLSGELP--GDLGKLV 337 (350)
Q Consensus 264 ~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~ 337 (350)
.++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..| ..+..+++|+.|++++|.+++..+ ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 112333334444433 334333 457778888888887776543 235667788888888887775432 3467778
Q ss_pred CCCEEeCcCCCCC
Q 036666 338 LLEQLHLSDNMLT 350 (350)
Q Consensus 338 ~L~~L~l~~n~l~ 350 (350)
+|++|++++|+++
T Consensus 388 ~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 388 NLTSLDISRNTFH 400 (549)
T ss_dssp TCCEEECTTCCCC
T ss_pred CCCEEECCCCCCc
Confidence 8888888888764
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.7e-30 Score=254.53 Aligned_cols=264 Identities=20% Similarity=0.298 Sum_probs=150.6
Q ss_pred CEEEEEcCCCC-CCCC-CCCccCC-------CCCCCCEEECCCCcCCcCCCc--CCCCCCCCCeEeCCCCCCCCCCCccc
Q 036666 72 RVISLSLPDTF-LNLS-ALPPQLS-------SLSSLQLLNLSSTNISGIIPP--SFGQLTHLRLLDLSSNSLSGPIPEEL 140 (350)
Q Consensus 72 ~v~~l~l~~~~-~~~~-~~~~~~~-------~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~ 140 (350)
.++.+++++|. +. + .+|..+. .+++|++|++++|.+. .+|. .+..+++|++|++++|.+. .+| .|
T Consensus 516 ~L~~L~Ls~N~~ls-g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 516 ELQSLNIACNRGIS-AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp SCCEEECTTCTTSC-HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred CCCEEECcCCCCcc-cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence 55566666654 43 2 3443222 2335555555555555 4444 4555555555555555555 444 45
Q ss_pred CCCCCCCEEEccCCCCCCCCCccCCCCCC-CCEEEcccCcCCCCCCccCCCC----------------------------
Q 036666 141 GQLSLLQFLFLNTNRLSGSIPPQLANLTS-LQVLCLQDNLLNGSIPSQLGSL---------------------------- 191 (350)
Q Consensus 141 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l---------------------------- 191 (350)
..+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+...
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 55555555555555555 44444555555 555555555544 334333333
Q ss_pred ---CCCCEEeccCCCCCcccCChh-hcCCCCcCeeecccccCcCCCCccccC--------CCcCceEeecccccccCCcc
Q 036666 192 ---VSLQQFRIGGNPYLTGEIPTQ-LGMLTNLTTFGAAATGLSGVIPPTFGN--------LINLQTLALYDTEVFGSIPP 259 (350)
Q Consensus 192 ---~~L~~L~l~~n~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~--------~~~L~~L~l~~~~~~~~~~~ 259 (350)
++|+.|++++|. +. .++.. +..+++|+.|++++|.++ .+|..+.. +++|+.|++++|.+. .+|.
T Consensus 670 ~~~~~L~~L~Ls~N~-L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 670 YKGINASTVTLSYNE-IQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp CCCCCEEEEECCSSC-CC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred ccCCCcCEEEccCCc-CC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 245555555554 33 23332 335667777777777666 33332222 226777777777765 4555
Q ss_pred ccc--CCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccC------ccCcccCCccCcCCCCCCEEEccCCcCcccCCc
Q 036666 260 EIG--LCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWG------NTLSGPIPAELSNCSALVVLDASANDLSGELPG 331 (350)
Q Consensus 260 ~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 331 (350)
.+. .+++|+.|++++|.+++ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|.+ +.+|.
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 554 67777777777777774 566666777777777755 556666777777777777777777777 46666
Q ss_pred cccCCCCCCEEeCcCCCC
Q 036666 332 DLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 332 ~~~~l~~L~~L~l~~n~l 349 (350)
.+. ++|+.|++++|++
T Consensus 824 ~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCC--SSSCEEECCSCTT
T ss_pred hhc--CCCCEEECCCCCC
Confidence 554 5777777777765
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4e-31 Score=231.97 Aligned_cols=247 Identities=21% Similarity=0.177 Sum_probs=216.7
Q ss_pred CEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCC--CCccCCCCCCCCEEEcc
Q 036666 99 QLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGS--IPPQLANLTSLQVLCLQ 176 (350)
Q Consensus 99 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~ 176 (350)
+.++.+++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57888888887 5555443 6899999999999965555689999999999999998833 25566778999999999
Q ss_pred cCcCCCCCCccCCCCCCCCEEeccCCCCCcccCC-hhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeeccccccc
Q 036666 177 DNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIP-TQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFG 255 (350)
Q Consensus 177 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 255 (350)
+|.+. .++..+..+++|++|++++|. +..... ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 99987 466678899999999999998 444443 678899999999999999998888889999999999999999976
Q ss_pred -CCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCcccc
Q 036666 256 -SIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLG 334 (350)
Q Consensus 256 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 334 (350)
..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5678899999999999999999988888999999999999999999988777889999999999999999999999999
Q ss_pred CCC-CCCEEeCcCCCCC
Q 036666 335 KLV-LLEQLHLSDNMLT 350 (350)
Q Consensus 335 ~l~-~L~~L~l~~n~l~ 350 (350)
.++ +|++|++++|+++
T Consensus 245 ~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCTTCCEEECTTCCEE
T ss_pred hhhccCCEEEccCCCee
Confidence 985 9999999999873
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.9e-30 Score=238.56 Aligned_cols=246 Identities=21% Similarity=0.235 Sum_probs=219.7
Q ss_pred CCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccc
Q 036666 98 LQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQD 177 (350)
Q Consensus 98 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 177 (350)
.+.++.++..++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 356777777777 5665444 6899999999999988889999999999999999999988888999999999999999
Q ss_pred CcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeeccccc-CcCCCCccccCCCcCceEeecccccccC
Q 036666 178 NLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATG-LSGVIPPTFGNLINLQTLALYDTEVFGS 256 (350)
Q Consensus 178 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 256 (350)
|++....+..+..+++|++|++++|. +....+..+..+++|++|++++|. +....+..+.++++|++|++++|.+.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99998777789999999999999998 666677789999999999999954 4444455789999999999999999654
Q ss_pred CcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCC
Q 036666 257 IPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKL 336 (350)
Q Consensus 257 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 336 (350)
| .+..+++|+.|++++|.+++..|..+..+++|++|++++|++.+..+..|..+++|+.|++++|++++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 57889999999999999998889999999999999999999999889999999999999999999998777888999
Q ss_pred CCCCEEeCcCCCC
Q 036666 337 VLLEQLHLSDNML 349 (350)
Q Consensus 337 ~~L~~L~l~~n~l 349 (350)
++|++|++++|++
T Consensus 290 ~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 290 RYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEccCCCc
Confidence 9999999999986
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=237.60 Aligned_cols=246 Identities=23% Similarity=0.237 Sum_probs=210.2
Q ss_pred EEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCC
Q 036666 75 SLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTN 154 (350)
Q Consensus 75 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 154 (350)
.++..+..+ ..+|..+. ++++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|
T Consensus 47 ~v~c~~~~l--~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNL--REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCC--SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCc--CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 455555554 67787765 78999999999999888889999999999999999999887889999999999999999
Q ss_pred CCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCC
Q 036666 155 RLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIP 234 (350)
Q Consensus 155 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 234 (350)
+++...+..|..+++|++|++++|.+....+..+..+++|++|++++|..........+.++++|++|++++|.++.. |
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c
Confidence 999777778999999999999999999777778999999999999987645555566788899999999999988844 3
Q ss_pred ccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCC
Q 036666 235 PTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSA 314 (350)
Q Consensus 235 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 314 (350)
.+..+++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 4778888899999988888877888888888888988888888777778888888888888888888777777788888
Q ss_pred CCEEEccCCcCc
Q 036666 315 LVVLDASANDLS 326 (350)
Q Consensus 315 L~~L~l~~n~l~ 326 (350)
|+.|++++|.+.
T Consensus 281 L~~L~L~~Np~~ 292 (440)
T 3zyj_A 281 LERIHLHHNPWN 292 (440)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEcCCCCcc
Confidence 888888888753
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=5.7e-30 Score=235.79 Aligned_cols=245 Identities=22% Similarity=0.241 Sum_probs=219.2
Q ss_pred CEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccC
Q 036666 99 QLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDN 178 (350)
Q Consensus 99 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 178 (350)
+.++..+..++ .+|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 46777787877 5665554 78999999999999888889999999999999999999877788999999999999999
Q ss_pred cCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeeccccc-CcCCCCccccCCCcCceEeecccccccCC
Q 036666 179 LLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATG-LSGVIPPTFGNLINLQTLALYDTEVFGSI 257 (350)
Q Consensus 179 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 257 (350)
+++...+..+..+++|++|++++|. +....+..+..+++|++|++++|. +....+..+.++++|++|++++|.+.. +
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 200 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I 200 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence 9997777789999999999999998 677777789999999999999954 444445578999999999999999964 4
Q ss_pred cccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCC
Q 036666 258 PPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLV 337 (350)
Q Consensus 258 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 337 (350)
| .+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..|..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 4 478899999999999999988899999999999999999999999999999999999999999999988888889999
Q ss_pred CCCEEeCcCCCC
Q 036666 338 LLEQLHLSDNML 349 (350)
Q Consensus 338 ~L~~L~l~~n~l 349 (350)
+|+.|++++|++
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 999999999986
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-30 Score=249.28 Aligned_cols=252 Identities=19% Similarity=0.208 Sum_probs=208.0
Q ss_pred CCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEE
Q 036666 94 SLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVL 173 (350)
Q Consensus 94 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 173 (350)
.+.+++.+++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35789999999999987766667889999999999999998888899999999999999999998888889999999999
Q ss_pred EcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCC-------------
Q 036666 174 CLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNL------------- 240 (350)
Q Consensus 174 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~------------- 240 (350)
++++|.+....+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++.....+..+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence 999999997666678999999999999998 777788889999999999999999886533322221
Q ss_pred ------------------------CcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEec
Q 036666 241 ------------------------INLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLL 296 (350)
Q Consensus 241 ------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 296 (350)
++|+.|++++|.+.+ +..+..+++|+.|++++|.+++..|..+..+++|+.|++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 234555555555543 245677788888888888888777888888888888888
Q ss_pred cCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 297 WGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 297 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp TTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 8888875 4555667888888888888888 56777778888888888888874
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.2e-30 Score=230.68 Aligned_cols=234 Identities=22% Similarity=0.293 Sum_probs=206.3
Q ss_pred CCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEE
Q 036666 95 LSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLC 174 (350)
Q Consensus 95 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 174 (350)
.+++++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478899999999998 67777888999999999999988 78888889999999999999988 7788888999999999
Q ss_pred cccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccc
Q 036666 175 LQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVF 254 (350)
Q Consensus 175 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 254 (350)
+++|++.+.+|..+.. . .....+.++++|++|++++|.++ .+|..++.+++|++|++++|.+.
T Consensus 157 L~~n~~~~~~p~~~~~------~----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------E----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCccccChhHhh------c----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 9998877766664432 1 12234677999999999999998 77888999999999999999997
Q ss_pred cCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCcccc
Q 036666 255 GSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLG 334 (350)
Q Consensus 255 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 334 (350)
+ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 5 556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeCcCCCC
Q 036666 335 KLVLLEQLHLSDNML 349 (350)
Q Consensus 335 ~l~~L~~L~l~~n~l 349 (350)
++++|+.+++..+.+
T Consensus 299 ~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 299 QLPANCIILVPPHLQ 313 (328)
T ss_dssp GSCTTCEEECCGGGS
T ss_pred hccCceEEeCCHHHH
Confidence 999999999987754
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=4.6e-29 Score=231.40 Aligned_cols=258 Identities=29% Similarity=0.395 Sum_probs=146.9
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.+++.++++++.+. .+++ +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 68 ~~L~~L~Ls~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLT--DITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred cCCCEEECCCCccC--Cchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE
Confidence 47888888888773 4454 7788888888888888875443 7888888888888888775432 77777788888
Q ss_pred ccCCCCCCCCC-------------------ccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCCh
Q 036666 151 LNTNRLSGSIP-------------------PQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPT 211 (350)
Q Consensus 151 L~~n~~~~~~~-------------------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 211 (350)
+++|.+.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|. +.+..+
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~-l~~~~~- 216 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ-ISDITP- 216 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-CCCCGG-
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCc-cccccc-
Confidence 77776653210 1134455555556655555432 224455555555555554 222211
Q ss_pred hhcCCCCcCeeecccccC----------------------cCCCCccccCCCcCceEeecccccccCCcccccCCCCCCe
Q 036666 212 QLGMLTNLTTFGAAATGL----------------------SGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRN 269 (350)
Q Consensus 212 ~l~~~~~L~~L~l~~~~~----------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 269 (350)
++.+++|++|++++|.+ ++..+ +..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred -ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 33344444444444443 33222 3444444444444444433222 444555555
Q ss_pred EEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 270 LYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 270 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
|++++|++++..+ +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+++. ..+..+++|++|++++|++
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 5555555553222 4555566666666665554433 44556666666666666543 3456666666777766665
Q ss_pred C
Q 036666 350 T 350 (350)
Q Consensus 350 ~ 350 (350)
+
T Consensus 366 ~ 366 (466)
T 1o6v_A 366 S 366 (466)
T ss_dssp C
T ss_pred C
Confidence 3
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3.6e-29 Score=217.26 Aligned_cols=225 Identities=22% Similarity=0.221 Sum_probs=170.5
Q ss_pred CEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccC
Q 036666 99 QLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDN 178 (350)
Q Consensus 99 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 178 (350)
++++.+++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888887 445433 468999999999988777777888899999999999888777788888889999999888
Q ss_pred c-CCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCC
Q 036666 179 L-LNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSI 257 (350)
Q Consensus 179 ~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 257 (350)
. +....+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 665557778888888888888887 55555666777777888888777777666666777777777777777776655
Q ss_pred cccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcc
Q 036666 258 PPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSG 327 (350)
Q Consensus 258 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 327 (350)
+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 5566777777777777777776666777777777777777777776555566677777777777776653
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=9.6e-29 Score=229.26 Aligned_cols=256 Identities=29% Similarity=0.388 Sum_probs=168.4
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.+++.++++++.+ ..++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 46 ~~l~~L~l~~~~i--~~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGI--KSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCCCC--ccCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4789999999887 4455 37789999999999999986543 8999999999999999986544 89999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCC-------------------ccCCCCCCCCEEeccCCCCCcccCCh
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIP-------------------SQLGSLVSLQQFRIGGNPYLTGEIPT 211 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-------------------~~~~~l~~L~~L~l~~n~~~~~~~~~ 211 (350)
+++|.+++. +. +..+++|++|++++|.+.+... ..+..+++|++|++++|. +... .
T Consensus 119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~ 193 (466)
T 1o6v_A 119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDI--S 193 (466)
T ss_dssp CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCC--G
T ss_pred CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCC--h
Confidence 999999865 33 8999999999999998764211 124455667777777776 3322 3
Q ss_pred hhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCC
Q 036666 212 QLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKL 291 (350)
Q Consensus 212 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 291 (350)
.+..+++|++|++++|.+++..+ ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 267 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence 46677788888888887776543 55566666666666665432 234555566666666665553322 4455555
Q ss_pred CEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCC
Q 036666 292 TSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 292 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 348 (350)
++|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|++|++++|+
T Consensus 268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 555555555543222 3344444444444444443222 3344444444444443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=227.26 Aligned_cols=258 Identities=22% Similarity=0.191 Sum_probs=218.2
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
..++.++++++.+. +..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 48999999999985 43344789999999999999999988888899999999999999999965555689999999999
Q ss_pred ccCCCCCCCCC-ccCCCCCCCCEEEcccCc-CCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeeccccc
Q 036666 151 LNTNRLSGSIP-PQLANLTSLQVLCLQDNL-LNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATG 228 (350)
Q Consensus 151 L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 228 (350)
+++|++++..+ ..+..+++|++|++++|+ +....+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc
Confidence 99999995444 478999999999999994 666667789999999999999998 777778899999999999999999
Q ss_pred CcCCCCccccCCCcCceEeecccccccCCcccc---cCCCCCCeEEccCCcCcc----cCChhhhCCCCCCEEeccCccC
Q 036666 229 LSGVIPPTFGNLINLQTLALYDTEVFGSIPPEI---GLCSELRNLYLHMNKLTG----SIPSELGKLQKLTSLLLWGNTL 301 (350)
Q Consensus 229 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~ 301 (350)
++......+..+++|+.|++++|.+.+..+..+ .....++.++++++.+.+ .+|..+..+++|++|++++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 875544455668999999999999987655443 346778899999988875 4677889999999999999999
Q ss_pred cccCCccCcCCCCCCEEEccCCcCcccCC
Q 036666 302 SGPIPAELSNCSALVVLDASANDLSGELP 330 (350)
Q Consensus 302 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 330 (350)
++..+..+..+++|+.|++++|++.+..|
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 95444446899999999999999986544
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=9.7e-28 Score=221.30 Aligned_cols=253 Identities=23% Similarity=0.223 Sum_probs=146.9
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.+++.++++++.+. .+| .+..+++|++|++++|.+++. + +..+++|++|++++|.+.+. + +..+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~--~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT--DMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCC--CCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcc--cCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 35667777776663 334 466667777777777776653 2 66667777777777766643 2 66667777777
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCc
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
+++|++++ ++ ++.+++|++|++++|++++. .+..+++|++|++++|... +.+ .+..+++|++|++++|.++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI-TKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCC-CCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcc-ccc--ccccCCcCCEEECCCCccc
Confidence 77776664 22 56666777777777766643 2556666666666666422 222 3455566666666666665
Q ss_pred CCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccC-
Q 036666 231 GVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAEL- 309 (350)
Q Consensus 231 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~- 309 (350)
+. | ++.+++|+.|++++|.+.+. .+..+++|+.|++++|++++ +| +..+++|++|++++|++++..+..+
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 52 2 55555666666666655443 24555566666666666554 33 4555556666666555554332222
Q ss_pred ----------------------------cCCCCCCEEEccCCcCcccCCc--------cccCCCCCCEEeCcCCCCC
Q 036666 310 ----------------------------SNCSALVVLDASANDLSGELPG--------DLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 310 ----------------------------~~~~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~ 350 (350)
..+++|+.|++++|...+.+|. .+..+++|++|++++|+++
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred CCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 2345566666666654444332 2445566777777777664
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.7e-27 Score=219.59 Aligned_cols=255 Identities=19% Similarity=0.166 Sum_probs=152.8
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.+++.++++++.+. .++ +..+++|++|++++|.+++. + +..+++|++|++++|.+.+ ++ +..+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~--~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNIT--TLD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCC--eEc--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 46777777777764 333 66777777777777777753 2 6677777777777777764 33 66777777777
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCC-------------------h
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIP-------------------T 211 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-------------------~ 211 (350)
+++|++++. + ++.+++|++|++++|...+.+ .+..+++|++|++++|. +.+ ++ .
T Consensus 134 l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~-l~l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 134 CARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITE-LDVSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp CTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCC-CCCTTCTTCCEEECCSSCCSCC
T ss_pred CCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cce-eccccCCCCCEEECcCCcCCee
Confidence 777776643 2 455555555555555333222 23444455555555544 222 11 0
Q ss_pred hhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCC-------CCCeEEccCCcCcccCChh
Q 036666 212 QLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCS-------ELRNLYLHMNKLTGSIPSE 284 (350)
Q Consensus 212 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~ 284 (350)
.++.+++|++|++++|.+++ +| +..+++|+.|++++|.+.+..+..+..+. +|+.|++++|.+.+.+|
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence 24444555555555555554 22 44555555555555555443322222221 23333333343333333
Q ss_pred hhCCCCCCEEeccCccCcccCCc--------cCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 285 LGKLQKLTSLLLWGNTLSGPIPA--------ELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 285 ~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
++.+++|+.|++++|...+.+|. .+..+++|+.|++++|++++. + +..+++|+.|++++|+++
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 34567888888888876554432 255678999999999999974 3 889999999999999885
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=6.7e-32 Score=237.41 Aligned_cols=245 Identities=24% Similarity=0.229 Sum_probs=169.0
Q ss_pred CCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCC-CCCCcccC-------CCCCCCEEEccCCCCCCCCCccC--
Q 036666 95 LSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLS-GPIPEELG-------QLSLLQFLFLNTNRLSGSIPPQL-- 164 (350)
Q Consensus 95 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~l-- 164 (350)
.++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34566666666666 444433322 666677776663 33444333 56777777777777776666654
Q ss_pred CCCCCCCEEEcccCcCCCCCCccCCCC-----CCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCC--CCccc
Q 036666 165 ANLTSLQVLCLQDNLLNGSIPSQLGSL-----VSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGV--IPPTF 237 (350)
Q Consensus 165 ~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l 237 (350)
..+++|++|++++|++.+. |..+..+ ++|++|++++|. +....+..+..+++|++|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 6677777777777777655 5555544 677777777776 5555556677777777777777776543 22333
Q ss_pred --cCCCcCceEeecccccccC--Cc-ccccCCCCCCeEEccCCcCcccCC-hhhhCCCCCCEEeccCccCcccCCccCcC
Q 036666 238 --GNLINLQTLALYDTEVFGS--IP-PEIGLCSELRNLYLHMNKLTGSIP-SELGKLQKLTSLLLWGNTLSGPIPAELSN 311 (350)
Q Consensus 238 --~~~~~L~~L~l~~~~~~~~--~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 311 (350)
..+++|++|++++|.+.+. .+ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 6778888888888877531 12 334567888889998888886554 44566788999999999888 6676665
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 312 CSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 312 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
++|+.|++++|++++. |. +..+++|++|++++|+++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 7889999999998865 55 888899999999999875
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=9e-28 Score=206.69 Aligned_cols=217 Identities=26% Similarity=0.303 Sum_probs=166.9
Q ss_pred CCCCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCC
Q 036666 57 LTPCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPI 136 (350)
Q Consensus 57 ~~~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 136 (350)
.+.|.|.|+.|...+..+.++++++.+ ..+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l--~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKL--TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCC--SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCC--CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 477999998886555678899999888 56777665 68999999999999777778999999999999999998666
Q ss_pred CcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCC
Q 036666 137 PEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGML 216 (350)
Q Consensus 137 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~ 216 (350)
+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 156 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKL 156 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCC
Confidence 6677889999999999999987767778888999999999998887777777788888888888877 555445556667
Q ss_pred CCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCc
Q 036666 217 TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLT 278 (350)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 278 (350)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 77777777777766655555666666666666666665554445556666666666666654
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-30 Score=230.23 Aligned_cols=257 Identities=22% Similarity=0.184 Sum_probs=183.7
Q ss_pred EEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEcc
Q 036666 73 VISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLN 152 (350)
Q Consensus 73 v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 152 (350)
....+++.+.+. ..+...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 344444444432 2222334456688888888888887666778888888888888888875443 7788888888888
Q ss_pred CCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCC
Q 036666 153 TNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGV 232 (350)
Q Consensus 153 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 232 (350)
+|.+++. ...++|++|++++|++.+..+. .+++|++|++++|. +....+..+..+++|++|++++|.+++.
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcc
Confidence 8877632 2337888888888887754433 35678888888887 5655566677788888888888888776
Q ss_pred CCccc-cCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcC
Q 036666 233 IPPTF-GNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSN 311 (350)
Q Consensus 233 ~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 311 (350)
.+..+ ..+++|++|++++|.+.+. + ....+++|++|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 66555 3678888888888887654 2 23347788888888888874 4445777888888888888887 45667777
Q ss_pred CCCCCEEEccCCcCc-ccCCccccCCCCCCEEeCc
Q 036666 312 CSALVVLDASANDLS-GELPGDLGKLVLLEQLHLS 345 (350)
Q Consensus 312 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 345 (350)
+++|+.|++++|.+. +.+|..+..+++|+.++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 888888888888887 6666677777777776665
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.6e-29 Score=219.25 Aligned_cols=238 Identities=19% Similarity=0.172 Sum_probs=200.6
Q ss_pred CCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccc
Q 036666 98 LQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQD 177 (350)
Q Consensus 98 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 177 (350)
++..+++.+.+.......+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455667776664444555678899999999999998777899999999999999999986544 88999999999999
Q ss_pred CcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCC
Q 036666 178 NLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSI 257 (350)
Q Consensus 178 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 257 (350)
|.+++.. ..++|++|++++|. +....+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Ccccccc-----CCCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9987432 34899999999998 544433 34688999999999999888888999999999999999998877
Q ss_pred cccc-cCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCC
Q 036666 258 PPEI-GLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKL 336 (350)
Q Consensus 258 ~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 336 (350)
+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++. |..+..+++|+.|++++|+++ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 7666 4789999999999999855 32 33589999999999999954 555889999999999999999 578889999
Q ss_pred CCCCEEeCcCCCCC
Q 036666 337 VLLEQLHLSDNMLT 350 (350)
Q Consensus 337 ~~L~~L~l~~n~l~ 350 (350)
++|++|++++|+++
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 99999999999874
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.5e-30 Score=227.33 Aligned_cols=245 Identities=21% Similarity=0.223 Sum_probs=202.0
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCC-cCCCcCCC-------CCCCCCeEeCCCCCCCCCCCccc--C
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNIS-GIIPPSFG-------QLTHLRLLDLSSNSLSGPIPEEL--G 141 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~-------~l~~L~~L~L~~~~~~~~~~~~~--~ 141 (350)
.++.++++++.+ .+|..+... +++|++++|.+. ..++..+. .+++|++|++++|.+.+..|..+ .
T Consensus 44 ~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 456666777766 466655533 889999999984 34554444 68999999999999998888876 8
Q ss_pred CCCCCCEEEccCCCCCCCCCccCCCC-----CCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCccc--CChhh-
Q 036666 142 QLSLLQFLFLNTNRLSGSIPPQLANL-----TSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGE--IPTQL- 213 (350)
Q Consensus 142 ~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~l- 213 (350)
.+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|. +.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP-ELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT-TCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC-cCcchHHHHHHH
Confidence 999999999999999976 7777666 999999999999998888999999999999999998 4433 23333
Q ss_pred -cCCCCcCeeecccccCcCC---CCccccCCCcCceEeecccccccCCc-ccccCCCCCCeEEccCCcCcccCChhhhCC
Q 036666 214 -GMLTNLTTFGAAATGLSGV---IPPTFGNLINLQTLALYDTEVFGSIP-PEIGLCSELRNLYLHMNKLTGSIPSELGKL 288 (350)
Q Consensus 214 -~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 288 (350)
..+++|++|++++|.+++. ....+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 8899999999999999842 22345678999999999999988764 45667899999999999999 7777665
Q ss_pred CCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCccc
Q 036666 289 QKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGE 328 (350)
Q Consensus 289 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 328 (350)
++|++|++++|++++. |. +..+++|+.|++++|++++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8999999999999966 65 88999999999999999853
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.3e-26 Score=200.09 Aligned_cols=225 Identities=20% Similarity=0.185 Sum_probs=172.3
Q ss_pred EEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCc
Q 036666 100 LLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNL 179 (350)
Q Consensus 100 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 179 (350)
..+..+..+. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4555555555 4555443 579999999999987777788899999999999999887777778889999999999999
Q ss_pred CCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCC-CCccccCCCcCceEeecccccccCCc
Q 036666 180 LNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGV-IPPTFGNLINLQTLALYDTEVFGSIP 258 (350)
Q Consensus 180 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~ 258 (350)
+.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+.+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 887777788888999999998887 5555555677888888888888888763 57778888888888888888877666
Q ss_pred ccccCCCCCC----eEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccC
Q 036666 259 PEIGLCSELR----NLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGEL 329 (350)
Q Consensus 259 ~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 329 (350)
..+..+++|+ .|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 6666666665 778888888754444443 347888888888887666666677888888888888777543
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-28 Score=228.99 Aligned_cols=237 Identities=22% Similarity=0.185 Sum_probs=183.5
Q ss_pred CCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEE
Q 036666 94 SLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVL 173 (350)
Q Consensus 94 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 173 (350)
.+++|++|++++|.+++..|..|..+++|++|+|++|.+.+..| +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34478888888888887777788888888899988888876554 788888888888888877432 23788888
Q ss_pred EcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCcccc-CCCcCceEeecccc
Q 036666 174 CLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFG-NLINLQTLALYDTE 252 (350)
Q Consensus 174 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 252 (350)
++++|.+.+..+. .+++|++|++++|. +.+..+..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 8888888765443 45778888888888 6666677778888888888888888887777765 68888888888888
Q ss_pred cccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCc-ccCCc
Q 036666 253 VFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLS-GELPG 331 (350)
Q Consensus 253 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~ 331 (350)
+.+.. ....+++|+.|++++|.+++. |..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 86652 234578888888888888854 4457788888888888888884 5667778888888888888887 56666
Q ss_pred cccCCCCCCEEeCc
Q 036666 332 DLGKLVLLEQLHLS 345 (350)
Q Consensus 332 ~~~~l~~L~~L~l~ 345 (350)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 67777766666654
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1e-26 Score=220.81 Aligned_cols=262 Identities=26% Similarity=0.392 Sum_probs=182.0
Q ss_pred CCCCCCCCCCCCCCcCce--------eeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCC
Q 036666 48 ILSSWNPSNLTPCSWQGI--------TCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQL 119 (350)
Q Consensus 48 ~~~~w~~~~~~~c~~~~~--------~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 119 (350)
....|. ...++|.|.+. .|. ...++.++++++.+ ..+|..+. ++|++|++++|.++ .+|. .+
T Consensus 11 ~w~~W~-~~~~~~~~~~r~~~~~~~~~c~-~~~l~~L~ls~n~L--~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l 80 (622)
T 3g06_A 11 VWSAWR-RAAPAEESRGRAAVVQKMRACL-NNGNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLT-SLPA---LP 80 (622)
T ss_dssp HHHHHH-HTCCGGGHHHHHHHHHHHHHHH-HHCCCEEECCSSCC--SCCCSCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred HHHHHH-hcCCcchhccccccCccccccc-CCCCcEEEecCCCc--CccChhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence 345665 34566777543 232 13578888888887 46777665 78888888888887 4444 46
Q ss_pred CCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEec
Q 036666 120 THLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRI 199 (350)
Q Consensus 120 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 199 (350)
++|++|++++|.+. .+|. .+++|++|++++|++++ +|. .+++|++|++++|+++. +|.. +++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEEC
Confidence 78888888888887 4454 66788888888888774 333 45677777777777664 3332 366777777
Q ss_pred cCCCCCcccCChh---h--------------cCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCccccc
Q 036666 200 GGNPYLTGEIPTQ---L--------------GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIG 262 (350)
Q Consensus 200 ~~n~~~~~~~~~~---l--------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 262 (350)
++|. +.. ++.. + ..+++|+.|++++|.+++. |. .+++|+.|++++|.+.. +|.
T Consensus 149 s~N~-l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~--- 218 (622)
T 3g06_A 149 SDNQ-LAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA--- 218 (622)
T ss_dssp CSSC-CSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---
T ss_pred cCCc-CCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---
Confidence 7765 332 1111 1 2235666666666666542 22 23566667776666643 332
Q ss_pred CCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 036666 263 LCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQL 342 (350)
Q Consensus 263 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 342 (350)
.+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|
T Consensus 219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 24789999999999984 55 46689999999999998 4555 5689999999999999 778899999999999
Q ss_pred eCcCCCCC
Q 036666 343 HLSDNMLT 350 (350)
Q Consensus 343 ~l~~n~l~ 350 (350)
++++|+++
T Consensus 290 ~L~~N~l~ 297 (622)
T 3g06_A 290 NLEGNPLS 297 (622)
T ss_dssp ECCSCCCC
T ss_pred EecCCCCC
Confidence 99999985
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.2e-26 Score=200.27 Aligned_cols=216 Identities=22% Similarity=0.229 Sum_probs=187.7
Q ss_pred CCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCC
Q 036666 86 SALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLA 165 (350)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 165 (350)
..+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 56777664 6899999999999987777899999999999999999977777899999999999999999987778899
Q ss_pred CCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCc-
Q 036666 166 NLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQ- 244 (350)
Q Consensus 166 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~- 244 (350)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+....++..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 9999999999999998777777999999999999999843335688999999999999999999988777777777776
Q ss_pred ---eEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCccc
Q 036666 245 ---TLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGP 304 (350)
Q Consensus 245 ---~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 304 (350)
.|++++|.+.+..+..+.. .+|+.|++++|++++..+..+..+++|++|++++|.+...
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 8999999997766655543 5899999999999977666788999999999999999854
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.3e-28 Score=223.60 Aligned_cols=219 Identities=21% Similarity=0.174 Sum_probs=191.0
Q ss_pred CCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCE
Q 036666 117 GQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQ 196 (350)
Q Consensus 117 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 196 (350)
..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+.. ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 455689999999999998888899999999999999999986554 899999999999999987532 2389999
Q ss_pred EeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCccccc-CCCCCCeEEccCC
Q 036666 197 FRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIG-LCSELRNLYLHMN 275 (350)
Q Consensus 197 L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n 275 (350)
|++++|. +....+ ..+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+..|..+. .+++|+.|++++|
T Consensus 104 L~L~~N~-l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNN-ISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSC-CCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECcCCc-CCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 9999998 554443 3468999999999999998888999999999999999999988887775 7899999999999
Q ss_pred cCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 276 KLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 276 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
.+++..+ ...+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 9996532 3468999999999999996544 58899999999999999995 7778999999999999999874
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-25 Score=192.78 Aligned_cols=204 Identities=24% Similarity=0.247 Sum_probs=162.0
Q ss_pred CCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEec
Q 036666 120 THLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRI 199 (350)
Q Consensus 120 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 199 (350)
...++++++++.+. .+|..+. +++++|++++|++++..+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35788999999888 5665443 67999999999998776778889999999999999988666666788889999999
Q ss_pred cCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcc
Q 036666 200 GGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTG 279 (350)
Q Consensus 200 ~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 279 (350)
++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 8887 566566667788888888888888887777777888888888888888876666667778888888888888876
Q ss_pred cCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcc
Q 036666 280 SIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSG 327 (350)
Q Consensus 280 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 327 (350)
..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 666667778888888888888876666667778888888888887753
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3e-25 Score=204.44 Aligned_cols=229 Identities=26% Similarity=0.409 Sum_probs=110.9
Q ss_pred CCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 036666 96 SSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCL 175 (350)
Q Consensus 96 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 175 (350)
++|++|++++|.+++ +| .|.++++|++|++++|.+.+ +|..+ ++|++|++++|++++ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355666666665553 44 35555666666666655553 33221 355555555555553 33 3455555555555
Q ss_pred ccCcCCC-------------------CCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCcc
Q 036666 176 QDNLLNG-------------------SIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPT 236 (350)
Q Consensus 176 ~~n~~~~-------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 236 (350)
++|.+.+ .+| .+..+++|++|++++|. +.+ ++. .+++|++|++++|.+++ +|..
T Consensus 203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 203 DNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKT-LPD---LPPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSS-CCS---CCTTCCEEECCSSCCSC-CCCC
T ss_pred CCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCc-ccc---cccccCEEECCCCcccc-cCcc
Confidence 5554442 233 24444455555555444 221 111 12344444444444443 1211
Q ss_pred ccCCCcCceEeeccccccc--CCcccc-------------cCC-CCCCeEEccCCcCcccCChhhhCCCCCCEEeccCcc
Q 036666 237 FGNLINLQTLALYDTEVFG--SIPPEI-------------GLC-SELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNT 300 (350)
Q Consensus 237 l~~~~~L~~L~l~~~~~~~--~~~~~~-------------~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 300 (350)
+++|++|++++|.+.+ ..|..+ ... ++|++|++++|++++ +|.. +++|++|++++|+
T Consensus 276 ---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNH 348 (454)
T ss_dssp ---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred ---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCc
Confidence 2445555555555543 111111 112 366666666666663 4432 4677777777777
Q ss_pred CcccCCccCcCCCCCCEEEccCCcCcc--cCCccccCC-------------CCCCEEeCcCCCCC
Q 036666 301 LSGPIPAELSNCSALVVLDASANDLSG--ELPGDLGKL-------------VLLEQLHLSDNMLT 350 (350)
Q Consensus 301 ~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~l~ 350 (350)
++ .+|. .+++|+.|++++|++++ .+|..+..+ ++|++|++++|+++
T Consensus 349 l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 349 LA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred cc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 77 3444 35778888888888877 677777666 77888888888763
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=2e-29 Score=233.53 Aligned_cols=278 Identities=23% Similarity=0.205 Sum_probs=204.9
Q ss_pred CEEEEEcCCCCCCC---CCCCccCCCCCCCCEEECCCCcCCcCCCcC-----CCCCCCCCeEeCCCCCCCCCC----Ccc
Q 036666 72 RVISLSLPDTFLNL---SALPPQLSSLSSLQLLNLSSTNISGIIPPS-----FGQLTHLRLLDLSSNSLSGPI----PEE 139 (350)
Q Consensus 72 ~v~~l~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~L~~~~~~~~~----~~~ 139 (350)
.++.+++++|.+.. ..++..+..+++|++|++++|.+++..+.. +...++|++|++++|.+.+.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 58888888887751 134667788888888888888876432221 223567888888888887533 445
Q ss_pred cCCCCCCCEEEccCCCCCCCCCccCC-----CCCCCCEEEcccCcCCCC----CCccCCCCCCCCEEeccCCCCCcccC-
Q 036666 140 LGQLSLLQFLFLNTNRLSGSIPPQLA-----NLTSLQVLCLQDNLLNGS----IPSQLGSLVSLQQFRIGGNPYLTGEI- 209 (350)
Q Consensus 140 ~~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~- 209 (350)
+..+++|++|++++|.++...+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|. +.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHH
Confidence 66678899999988887643333332 356889999999888753 35556678889999999887 44432
Q ss_pred ----ChhhcCCCCcCeeecccccCcCC----CCccccCCCcCceEeecccccccCCccccc-----CCCCCCeEEccCCc
Q 036666 210 ----PTQLGMLTNLTTFGAAATGLSGV----IPPTFGNLINLQTLALYDTEVFGSIPPEIG-----LCSELRNLYLHMNK 276 (350)
Q Consensus 210 ----~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~ 276 (350)
+.....+++|++|++++|.++.. ++..+..+++|++|++++|.+....+..+. ..++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 12233578999999999988764 466677789999999999987654333332 23689999999999
Q ss_pred Cccc----CChhhhCCCCCCEEeccCccCcccCCccCcC-----CCCCCEEEccCCcCcc----cCCccccCCCCCCEEe
Q 036666 277 LTGS----IPSELGKLQKLTSLLLWGNTLSGPIPAELSN-----CSALVVLDASANDLSG----ELPGDLGKLVLLEQLH 343 (350)
Q Consensus 277 l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~ 343 (350)
+++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+++ .+|..+..+++|++|+
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 8864 4566778899999999999998654444432 6799999999999986 6788888899999999
Q ss_pred CcCCCCC
Q 036666 344 LSDNMLT 350 (350)
Q Consensus 344 l~~n~l~ 350 (350)
+++|+++
T Consensus 405 l~~N~i~ 411 (461)
T 1z7x_W 405 LSNNCLG 411 (461)
T ss_dssp CCSSSCC
T ss_pred CCCCCCC
Confidence 9999875
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=5.7e-25 Score=190.92 Aligned_cols=203 Identities=24% Similarity=0.208 Sum_probs=142.1
Q ss_pred CCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCC
Q 036666 116 FGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQ 195 (350)
Q Consensus 116 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 195 (350)
+.+++++++++++++.+. .+|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+.+..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 566788888899888887 4555443 678888888888887767778888888888888888775432 25677788
Q ss_pred EEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCC
Q 036666 196 QFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMN 275 (350)
Q Consensus 196 ~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 275 (350)
+|++++|. +. .++..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~-l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQ-LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSC-CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCc-CC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888776 33 44555666777777777777777666666677777777777777766555555666677777777777
Q ss_pred cCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 276 KLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 276 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
++++..+..+..+++|++|++++|++. .+|..+...++|+.+++++|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 776444445566677777777777766 45555556666777777766654
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=9.8e-26 Score=207.73 Aligned_cols=247 Identities=22% Similarity=0.277 Sum_probs=131.3
Q ss_pred CEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCC-------------CeEeCCCCCCCCC---
Q 036666 72 RVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHL-------------RLLDLSSNSLSGP--- 135 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L-------------~~L~L~~~~~~~~--- 135 (350)
+++.++++++.+ +.+|..++++++|++|++++|.+.+.+|..+.++.+| ++|++++|.+.+.
T Consensus 12 ~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cchhhhcccCch--hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 455666666655 5566666666666666666665555555555544432 4555555544421
Q ss_pred ----------------CCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEec
Q 036666 136 ----------------IPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRI 199 (350)
Q Consensus 136 ----------------~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 199 (350)
+|.. .++|++|++++|.+++ ++.. .++|++|++++|.+.+ +| .+..+++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 3321 2455555555555542 1111 1466667777666664 44 4666677777777
Q ss_pred cCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcc
Q 036666 200 GGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTG 279 (350)
Q Consensus 200 ~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 279 (350)
++|. +.+ ++.. .++|++|++++|.+++ +| .++.+++|++|++++|.+.+ +|.. .++|++|++++|.++
T Consensus 161 ~~N~-l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 161 DNNS-LKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CSSC-CSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCCc-Ccc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 7665 332 2222 2467777777776665 34 46677777777777777654 3322 246777777777776
Q ss_pred cCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 280 SIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 280 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
.+|. +..+++|++|++++|++.+ +|.. .++|+.|++++|.+++ +|.. .++|++|++++|+++
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 5553 6677777778887777774 3332 3677777777777774 4432 256677777776653
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.6e-25 Score=191.48 Aligned_cols=207 Identities=23% Similarity=0.307 Sum_probs=131.0
Q ss_pred CCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCE
Q 036666 93 SSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQV 172 (350)
Q Consensus 93 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 172 (350)
..+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345677778887777763 2 2466777777777777777642 35677777777777777777666666677777777
Q ss_pred EEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccc
Q 036666 173 LCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTE 252 (350)
Q Consensus 173 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 252 (350)
|++++|++.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 7777777776555556667777777777766 444444455566666666666666665555555556666666666666
Q ss_pred cccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcC
Q 036666 253 VFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSN 311 (350)
Q Consensus 253 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 311 (350)
+.+..+..+..+++|+.|++++|.+.+ .+++|+.++++.|.+.|.+|.+++.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 555555445555566666666555542 2344555555555555555555443
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.1e-25 Score=189.64 Aligned_cols=206 Identities=22% Similarity=0.281 Sum_probs=102.5
Q ss_pred CCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEE
Q 036666 118 QLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQF 197 (350)
Q Consensus 118 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 197 (350)
.+++|+.|+++++.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 44555555555555442 1 1244455555555555555431 234455555555555555554444444555555555
Q ss_pred eccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcC
Q 036666 198 RIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKL 277 (350)
Q Consensus 198 ~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 277 (350)
++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 555554 3333444445555555555555555544444445555555555555555444444445555555555555555
Q ss_pred cccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccC
Q 036666 278 TGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGK 335 (350)
Q Consensus 278 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 335 (350)
++..+..+..+++|++|++++|.+.+ .+++|+.++++.|.++|.+|..++.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 54444444555555555555554432 2334555555555555555544443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.9e-24 Score=186.45 Aligned_cols=205 Identities=23% Similarity=0.200 Sum_probs=181.4
Q ss_pred cCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCC
Q 036666 91 QLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSL 170 (350)
Q Consensus 91 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 170 (350)
.+.+++++++++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..+ ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 3567889999999999998 4555443 689999999999998878889999999999999999985433 3789999
Q ss_pred CEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecc
Q 036666 171 QVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYD 250 (350)
Q Consensus 171 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 250 (350)
++|++++|.+. .+|..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 99999999998 677888999999999999998 6777778899999999999999999988888889999999999999
Q ss_pred cccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcc
Q 036666 251 TEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSG 303 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 303 (350)
|.+.+..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9998777777889999999999999999 778888888999999999998863
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=1.5e-28 Score=227.79 Aligned_cols=279 Identities=20% Similarity=0.198 Sum_probs=191.8
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCC----CCCEEECCCCcCCc----CCCcCCCCCCCCCeEeCCCCCCCCCCCccc--
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLS----SLQLLNLSSTNISG----IIPPSFGQLTHLRLLDLSSNSLSGPIPEEL-- 140 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-- 140 (350)
..++.++++++.+....+......++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 46788888887764111111112233 68888888888773 346667788888888888887764333322
Q ss_pred ---CCCCCCCEEEccCCCCCCCC----CccCCCCCCCCEEEcccCcCCCCCCccCC-----CCCCCCEEeccCCCCCccc
Q 036666 141 ---GQLSLLQFLFLNTNRLSGSI----PPQLANLTSLQVLCLQDNLLNGSIPSQLG-----SLVSLQQFRIGGNPYLTGE 208 (350)
Q Consensus 141 ---~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~ 208 (350)
...++|++|++++|.+++.. +..+..+++|++|++++|.+....+..+. ..++|++|++++|. +...
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 214 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSD 214 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTT
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHH
Confidence 23567888888888877532 44456678888888888877543222222 25588888888887 4442
Q ss_pred ----CChhhcCCCCcCeeecccccCcCCC-----CccccCCCcCceEeecccccccC----CcccccCCCCCCeEEccCC
Q 036666 209 ----IPTQLGMLTNLTTFGAAATGLSGVI-----PPTFGNLINLQTLALYDTEVFGS----IPPEIGLCSELRNLYLHMN 275 (350)
Q Consensus 209 ----~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n 275 (350)
++..+..+++|++|++++|.++... +..+..+++|++|++++|.++.. ++..+..+++|++|++++|
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 4566777888888888888876532 22233578888999988887654 4556667888999999998
Q ss_pred cCcccCChhhh-----CCCCCCEEeccCccCccc----CCccCcCCCCCCEEEccCCcCcccCCccccC-----CCCCCE
Q 036666 276 KLTGSIPSELG-----KLQKLTSLLLWGNTLSGP----IPAELSNCSALVVLDASANDLSGELPGDLGK-----LVLLEQ 341 (350)
Q Consensus 276 ~l~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~ 341 (350)
.+++..+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 88754333332 236899999999988764 4556667889999999999888665554442 679999
Q ss_pred EeCcCCCCC
Q 036666 342 LHLSDNMLT 350 (350)
Q Consensus 342 L~l~~n~l~ 350 (350)
|++++|+++
T Consensus 375 L~L~~n~i~ 383 (461)
T 1z7x_W 375 LWLADCDVS 383 (461)
T ss_dssp EECTTSCCC
T ss_pred EECCCCCCC
Confidence 999999875
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=5.1e-24 Score=181.20 Aligned_cols=191 Identities=26% Similarity=0.307 Sum_probs=144.0
Q ss_pred CCCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCC
Q 036666 58 TPCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIP 137 (350)
Q Consensus 58 ~~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 137 (350)
+++.|.|+.|.. ..+.++++++.+ ..+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l--~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSL--DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCC--SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCc--cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 345788899953 345788888877 67777665 689999999999998888889999999999999999998877
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCC
Q 036666 138 EELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLT 217 (350)
Q Consensus 138 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~ 217 (350)
..|..+++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..+++|++|++++|. +....+..+..++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 155 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCc
Confidence 788899999999999999987777778888999999999988886666666777777777777776 4444444556666
Q ss_pred CcCeeecccccCcCCCCccccCCCcCceEeeccccccc
Q 036666 218 NLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFG 255 (350)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 255 (350)
+|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 66666666666665555455555555555555555533
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=1.9e-27 Score=211.19 Aligned_cols=268 Identities=19% Similarity=0.194 Sum_probs=212.0
Q ss_pred CCCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCC--CCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCC
Q 036666 58 TPCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSL--SSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGP 135 (350)
Q Consensus 58 ~~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~ 135 (350)
.+..|.++.|+ ....+.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 35 vc~~W~~~~~~-~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASD-ESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTC-STTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcC-chhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 33468887775 345788999887664 4445555 8899999999999977665 56799999999999998755
Q ss_pred -CCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccC-cCCC-CCCccCCCCCCCCEEeccCC-CCCccc-CC
Q 036666 136 -IPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDN-LLNG-SIPSQLGSLVSLQQFRIGGN-PYLTGE-IP 210 (350)
Q Consensus 136 -~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~~-~~ 210 (350)
++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| . +.+. ++
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~ 187 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQ 187 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHH
Confidence 6777889999999999999988777788889999999999999 5654 25556778999999999999 6 5543 56
Q ss_pred hhhcCCC-CcCeeecccc--cCc-CCCCccccCCCcCceEeecccc-cccCCcccccCCCCCCeEEccCCc-CcccCChh
Q 036666 211 TQLGMLT-NLTTFGAAAT--GLS-GVIPPTFGNLINLQTLALYDTE-VFGSIPPEIGLCSELRNLYLHMNK-LTGSIPSE 284 (350)
Q Consensus 211 ~~l~~~~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 284 (350)
..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 7788899 9999999999 455 4556677889999999999998 666677788899999999999995 43333336
Q ss_pred hhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccC
Q 036666 285 LGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGK 335 (350)
Q Consensus 285 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 335 (350)
+..+++|++|++++| ++......+. ..+..|++++|.+++..|..++.
T Consensus 268 l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred HhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 788999999999999 5433222221 24667779999999988887764
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=190.70 Aligned_cols=199 Identities=23% Similarity=0.189 Sum_probs=110.6
Q ss_pred CCCEEEccCCCCCCCCCccC--CCCCCCCEEEcccCcCCCCCC----ccCCCCCCCCEEeccCCCCCcccCChhhcCCCC
Q 036666 145 LLQFLFLNTNRLSGSIPPQL--ANLTSLQVLCLQDNLLNGSIP----SQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTN 218 (350)
Q Consensus 145 ~L~~L~L~~n~~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~ 218 (350)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +....+..+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCC
Confidence 34444444444444444443 444444444444444443222 112234445555554444 33333444444555
Q ss_pred cCeeecccccCcCC--C--CccccCCCcCceEeecccccccCCcc----cccCCCCCCeEEccCCcCcccCChhhhCC--
Q 036666 219 LTTFGAAATGLSGV--I--PPTFGNLINLQTLALYDTEVFGSIPP----EIGLCSELRNLYLHMNKLTGSIPSELGKL-- 288 (350)
Q Consensus 219 L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-- 288 (350)
|++|++++|.+.+. + +..+..+++|++|++++|.+.. ++. .+..+++|++|++++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555544321 1 1123455666666666666532 121 23556777777777777776656555554
Q ss_pred -CCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCCC
Q 036666 289 -QKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 289 -~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 57888888888877 5565553 6788888888888753 32 566788888888888774
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.8e-27 Score=215.48 Aligned_cols=243 Identities=20% Similarity=0.215 Sum_probs=170.9
Q ss_pred CCCccCCCCCCCCEEECCCCcCCcC----CCcCCCCCCCCCeEeCCCCCCC---CCCCccc-------CCCCCCCEEEcc
Q 036666 87 ALPPQLSSLSSLQLLNLSSTNISGI----IPPSFGQLTHLRLLDLSSNSLS---GPIPEEL-------GQLSLLQFLFLN 152 (350)
Q Consensus 87 ~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~~~~~---~~~~~~~-------~~l~~L~~L~L~ 152 (350)
.++..+..+++|++|++++|.+... ++..+..+++|++|++++|.+. +.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4556667788899999999988765 3345778899999999986543 3445443 678889999999
Q ss_pred CCCCCC----CCCccCCCCCCCCEEEcccCcCCCCCCcc----CCCC---------CCCCEEeccCCCCCcccCC---hh
Q 036666 153 TNRLSG----SIPPQLANLTSLQVLCLQDNLLNGSIPSQ----LGSL---------VSLQQFRIGGNPYLTGEIP---TQ 212 (350)
Q Consensus 153 ~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~l---------~~L~~L~l~~n~~~~~~~~---~~ 212 (350)
+|.++. .++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|++.....+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 988886 35556778888899999888875332222 2223 7888888888873223333 45
Q ss_pred hcCCCCcCeeecccccCcC-----CCCccccCCCcCceEeecccccc----cCCcccccCCCCCCeEEccCCcCccc---
Q 036666 213 LGMLTNLTTFGAAATGLSG-----VIPPTFGNLINLQTLALYDTEVF----GSIPPEIGLCSELRNLYLHMNKLTGS--- 280 (350)
Q Consensus 213 l~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~--- 280 (350)
+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+. ..++..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6677788888888887762 23336677778888888888775 45566677777888888888877754
Q ss_pred -CChhhhC--CCCCCEEeccCccCcc----cCCccC-cCCCCCCEEEccCCcCcccC
Q 036666 281 -IPSELGK--LQKLTSLLLWGNTLSG----PIPAEL-SNCSALVVLDASANDLSGEL 329 (350)
Q Consensus 281 -~~~~~~~--~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~ 329 (350)
++..+.. +++|++|++++|.+++ .+|..+ .++++|+.|++++|.+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3455533 7778888888888776 366655 44678888888888877655
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.1e-26 Score=208.50 Aligned_cols=253 Identities=19% Similarity=0.184 Sum_probs=140.9
Q ss_pred EEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCC----cCCCCCC-CCCeEeCCCCCCCCCCCcccCCC-----CC
Q 036666 76 LSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIP----PSFGQLT-HLRLLDLSSNSLSGPIPEELGQL-----SL 145 (350)
Q Consensus 76 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l-----~~ 145 (350)
.+++.+.+. +.+|..+...++|++|++++|.+++..+ ..|..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGS-NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTC-CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccch-HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 345555554 4445444544557777777777765544 4556666 67777777777766555555543 67
Q ss_pred CCEEEccCCCCCCCCCcc----CCCC-CCCCEEEcccCcCCCCCCcc----CCC-CCCCCEEeccCCCCCccc----CCh
Q 036666 146 LQFLFLNTNRLSGSIPPQ----LANL-TSLQVLCLQDNLLNGSIPSQ----LGS-LVSLQQFRIGGNPYLTGE----IPT 211 (350)
Q Consensus 146 L~~L~L~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~----~~~-l~~L~~L~l~~n~~~~~~----~~~ 211 (350)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|. +.+. ++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHH
Confidence 777777777776554443 2333 66777777777766443332 222 2467777777666 4432 223
Q ss_pred hhcCCC-CcCeeecccccCcCCCCccc----cCC-CcCceEeecccccccCC----cccccC-CCCCCeEEccCCcCccc
Q 036666 212 QLGMLT-NLTTFGAAATGLSGVIPPTF----GNL-INLQTLALYDTEVFGSI----PPEIGL-CSELRNLYLHMNKLTGS 280 (350)
Q Consensus 212 ~l~~~~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~n~l~~~ 280 (350)
.+...+ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+.... +..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334444 66666666666665544333 233 46666666666664422 222322 34666666666666543
Q ss_pred CC----hhhhCCCCCCEEeccCccCccc-------CCccCcCCCCCCEEEccCCcCcccCC
Q 036666 281 IP----SELGKLQKLTSLLLWGNTLSGP-------IPAELSNCSALVVLDASANDLSGELP 330 (350)
Q Consensus 281 ~~----~~~~~~~~L~~L~l~~n~~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~~~ 330 (350)
.+ ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+..+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 32 2234556666666666663321 22334455566666666666654433
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.1e-26 Score=210.36 Aligned_cols=238 Identities=20% Similarity=0.213 Sum_probs=173.9
Q ss_pred CCcCCCCCCCCCeEeCCCCCCCCCCC----cccCCCCCCCEEEccCCCCC---CCCCccC-------CCCCCCCEEEccc
Q 036666 112 IPPSFGQLTHLRLLDLSSNSLSGPIP----EELGQLSLLQFLFLNTNRLS---GSIPPQL-------ANLTSLQVLCLQD 177 (350)
Q Consensus 112 ~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~L~~n~~~---~~~~~~l-------~~l~~L~~L~l~~ 177 (350)
++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44556677888899998888775433 34667888889988886443 3444443 6788888999888
Q ss_pred CcCCC----CCCccCCCCCCCCEEeccCCCCCcccCC----hhhcCC---------CCcCeeecccccCc-CCCC---cc
Q 036666 178 NLLNG----SIPSQLGSLVSLQQFRIGGNPYLTGEIP----TQLGML---------TNLTTFGAAATGLS-GVIP---PT 236 (350)
Q Consensus 178 n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~l~~~---------~~L~~L~l~~~~~~-~~~~---~~ 236 (350)
|.+.. .++..+..+++|++|++++|. +....+ ..+..+ ++|++|++++|.++ ..++ ..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 88876 355567778888888888887 443322 233334 88888888888887 3333 35
Q ss_pred ccCCCcCceEeeccccccc-----CCcccccCCCCCCeEEccCCcCc----ccCChhhhCCCCCCEEeccCccCccc---
Q 036666 237 FGNLINLQTLALYDTEVFG-----SIPPEIGLCSELRNLYLHMNKLT----GSIPSELGKLQKLTSLLLWGNTLSGP--- 304 (350)
Q Consensus 237 l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~~~~~--- 304 (350)
+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6677888888888888752 23336777888888999888885 45677778888889999988888764
Q ss_pred -CCccCc--CCCCCCEEEccCCcCcc----cCCccc-cCCCCCCEEeCcCCCCC
Q 036666 305 -IPAELS--NCSALVVLDASANDLSG----ELPGDL-GKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 305 -~~~~~~--~~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~ 350 (350)
++..+. .+++|+.|++++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 455553 37888889998888886 467666 56788889998888875
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=7.4e-24 Score=178.86 Aligned_cols=204 Identities=22% Similarity=0.224 Sum_probs=138.0
Q ss_pred CCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCC-CCCCCCcccCCCCCCCEEEccC-CCCCCCCCcc
Q 036666 86 SALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNS-LSGPIPEELGQLSLLQFLFLNT-NRLSGSIPPQ 163 (350)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~ 163 (350)
+.+|. +. +++++|++++|.+++..+..|..+++|++|++++|. +....+..|.++++|++|++++ |.+++..+..
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 56666 44 489999999999998777789999999999999997 8866667889999999999998 8888666677
Q ss_pred CCCCCCCCEEEcccCcCCCCCCccCCCCCCCC---EEeccCC-CCCcccCChhhcCCCCcC-eeecccccCcCCCCcccc
Q 036666 164 LANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQ---QFRIGGN-PYLTGEIPTQLGMLTNLT-TFGAAATGLSGVIPPTFG 238 (350)
Q Consensus 164 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~ 238 (350)
|..+++|++|++++|.+.+ +|. +..+++|+ +|++++| . +....+..+..+++|+ +|++++|.++
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~-l~~i~~~~~~~l~~L~~~L~l~~n~l~-------- 169 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPY-MTSIPVNAFQGLCNETLTLKLYNNGFT-------- 169 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTT-CCEECTTTTTTTBSSEEEEECCSCCCC--------
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcc-hhhcCcccccchhcceeEEEcCCCCCc--------
Confidence 8889999999999998875 554 66666666 7777766 4 4433333444444555 5555444444
Q ss_pred CCCcCceEeecccccccCCcccccCCCCCCeEEccCCc-CcccCChhhhCC-CCCCEEeccCccCcccCCccCcCCCCCC
Q 036666 239 NLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNK-LTGSIPSELGKL-QKLTSLLLWGNTLSGPIPAELSNCSALV 316 (350)
Q Consensus 239 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 316 (350)
...+..+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|++++. |.. .+++|+
T Consensus 170 ----------------~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~ 229 (239)
T 2xwt_C 170 ----------------SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLK 229 (239)
T ss_dssp ----------------EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCS
T ss_pred ----------------ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCc
Confidence 222222333 456666666663 554444555555 6666666666666532 322 445666
Q ss_pred EEEccCC
Q 036666 317 VLDASAN 323 (350)
Q Consensus 317 ~L~l~~n 323 (350)
.|+++++
T Consensus 230 ~L~l~~~ 236 (239)
T 2xwt_C 230 ELIARNT 236 (239)
T ss_dssp EEECTTC
T ss_pred eeeccCc
Confidence 6666554
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=8.9e-24 Score=178.38 Aligned_cols=197 Identities=19% Similarity=0.182 Sum_probs=140.1
Q ss_pred CCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCC-CCCCCCccCCCCCCCCEEEccc-CcCCCCCCccCCCCCCCCEEe
Q 036666 121 HLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNR-LSGSIPPQLANLTSLQVLCLQD-NLLNGSIPSQLGSLVSLQQFR 198 (350)
Q Consensus 121 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ 198 (350)
+|++|++++|.+.+..+..|.++++|++|++++|+ ++...+..|..+++|++|++++ |.+....+..+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f---------- 101 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL---------- 101 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE----------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh----------
Confidence 67777777777765555566666777777777665 5544444556666666666665 55554333444
Q ss_pred ccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCc---eEeeccc-ccccCCcccccCCCCCC-eEEcc
Q 036666 199 IGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQ---TLALYDT-EVFGSIPPEIGLCSELR-NLYLH 273 (350)
Q Consensus 199 l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~ 273 (350)
..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|+++
T Consensus 102 ---------------~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 102 ---------------KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp ---------------ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred ---------------CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 444555555555555554 333 66666666 8999988 88777677788999999 99999
Q ss_pred CCcCcccCChhhhCCCCCCEEeccCcc-CcccCCccCcCC-CCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCC
Q 036666 274 MNKLTGSIPSELGKLQKLTSLLLWGNT-LSGPIPAELSNC-SALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 274 ~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 348 (350)
+|+++...+..+.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 99999444444544 899999999995 987778889999 999999999999994 4443 67899999999874
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=2.7e-26 Score=203.80 Aligned_cols=246 Identities=19% Similarity=0.199 Sum_probs=198.6
Q ss_pred CCCEEECCCCcCCcCCCcCCCCC--CCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCC-CCccCCCCCCCCEE
Q 036666 97 SLQLLNLSSTNISGIIPPSFGQL--THLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGS-IPPQLANLTSLQVL 173 (350)
Q Consensus 97 ~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L 173 (350)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4789999998876 3345556 8899999999999876655 56799999999999998755 67778899999999
Q ss_pred EcccCcCCCCCCccCCCCCCCCEEeccCCCCCcc-cCChhhcCCCCcCeeecccc-cCcCC-CCccccCCC-cCceEeec
Q 036666 174 CLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTG-EIPTQLGMLTNLTTFGAAAT-GLSGV-IPPTFGNLI-NLQTLALY 249 (350)
Q Consensus 174 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~ 249 (350)
++++|.+.+..+..+..+++|++|++++|..+.+ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 9999998877777888999999999999942554 36677889999999999999 88764 566788899 99999999
Q ss_pred cc--ccc-cCCcccccCCCCCCeEEccCCc-CcccCChhhhCCCCCCEEeccCcc-CcccCCccCcCCCCCCEEEccCCc
Q 036666 250 DT--EVF-GSIPPEIGLCSELRNLYLHMNK-LTGSIPSELGKLQKLTSLLLWGNT-LSGPIPAELSNCSALVVLDASAND 324 (350)
Q Consensus 250 ~~--~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~ 324 (350)
+| .+. +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 444 4456667789999999999999 776777788999999999999995 44333346778999999999999
Q ss_pred CcccCCccccCC-CCCCEEeCcCCCCC
Q 036666 325 LSGELPGDLGKL-VLLEQLHLSDNMLT 350 (350)
Q Consensus 325 l~~~~~~~~~~l-~~L~~L~l~~n~l~ 350 (350)
++.. .+..+ .+++.|++++|+++
T Consensus 283 i~~~---~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 283 VPDG---TLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp SCTT---CHHHHHHHSTTSEESCCCSC
T ss_pred cCHH---HHHHHHhhCcceEEecccCc
Confidence 4432 23333 34677778888875
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=4.5e-24 Score=187.32 Aligned_cols=227 Identities=18% Similarity=0.174 Sum_probs=184.0
Q ss_pred CCCCEEECCCCcCCcCCCc---CCCCCCCCCeEeCCCCCCCCCCCccc--CCCCCCCEEEccCCCCCCCCC----ccCCC
Q 036666 96 SSLQLLNLSSTNISGIIPP---SFGQLTHLRLLDLSSNSLSGPIPEEL--GQLSLLQFLFLNTNRLSGSIP----PQLAN 166 (350)
Q Consensus 96 ~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~l~~ 166 (350)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578888888877532100 12235679999999999998898888 899999999999999997655 34567
Q ss_pred CCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcc---cCChhhcCCCCcCeeecccccCcCCC--Cc-cccCC
Q 036666 167 LTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTG---EIPTQLGMLTNLTTFGAAATGLSGVI--PP-TFGNL 240 (350)
Q Consensus 167 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~--~~-~l~~~ 240 (350)
+++|++|++++|.+.+..+..+..+++|++|++++|++... .....+..+++|++|++++|.++... +. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999999988888999999999999999983321 12334578999999999999997321 11 35788
Q ss_pred CcCceEeecccccccCCcccccCC---CCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCE
Q 036666 241 INLQTLALYDTEVFGSIPPEIGLC---SELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVV 317 (350)
Q Consensus 241 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 317 (350)
++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999988877777666 79999999999999 6676653 8999999999999964 33 678899999
Q ss_pred EEccCCcCcc
Q 036666 318 LDASANDLSG 327 (350)
Q Consensus 318 L~l~~n~l~~ 327 (350)
|++++|++++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999985
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=4.7e-23 Score=175.21 Aligned_cols=181 Identities=20% Similarity=0.189 Sum_probs=144.9
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeee
Q 036666 144 SLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFG 223 (350)
Q Consensus 144 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~ 223 (350)
...++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEE
Confidence 45778899998888 5565554 688999999999888777788888899999998887 6666677788888888888
Q ss_pred cccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcc
Q 036666 224 AAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSG 303 (350)
Q Consensus 224 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 303 (350)
+++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 88888887777777888888888888888876666667778888888888888886656577788888888888888887
Q ss_pred cCCccCcCCCCCCEEEccCCcCccc
Q 036666 304 PIPAELSNCSALVVLDASANDLSGE 328 (350)
Q Consensus 304 ~~~~~~~~~~~L~~L~l~~n~l~~~ 328 (350)
..+..+..+++|+.|++++|.+...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7776777888888888888887754
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.3e-22 Score=192.76 Aligned_cols=228 Identities=28% Similarity=0.381 Sum_probs=161.0
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.+++.|++++|.+ ..+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+.+ +|. .+++|++|+
T Consensus 61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEE
Confidence 4677777777776 34555 45677777777777763 443 55667777777776663 332 345566666
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccC-----------------CCCCCCCEEeccCCCCCcccCChhh
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQL-----------------GSLVSLQQFRIGGNPYLTGEIPTQL 213 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~l~~L~~L~l~~n~~~~~~~~~~l 213 (350)
+++|+++. +|.. +++|++|++++|.+.+ +|..+ ..+++|+.|++++|. +.. ++.
T Consensus 128 L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~-l~~-- 198 (622)
T 3g06_A 128 IFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LAS-LPT-- 198 (622)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSC-CCC--
T ss_pred CCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCC-CCC--
Confidence 66665553 3322 2555555555555443 11111 234788999999887 443 222
Q ss_pred cCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCE
Q 036666 214 GMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTS 293 (350)
Q Consensus 214 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 293 (350)
.+++|+.|++++|.++.. |. .+++|+.|++++|.+.+ +| ..+++|+.|++++|.++ .+|. .+++|+.
T Consensus 199 -~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~ 265 (622)
T 3g06_A 199 -LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLS 265 (622)
T ss_dssp -CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred -ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcE
Confidence 357999999999999853 33 34789999999999976 44 45689999999999999 5555 6789999
Q ss_pred EeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCcccc
Q 036666 294 LLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLG 334 (350)
Q Consensus 294 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 334 (350)
|++++|+++ .+|..+..+++|+.|++++|.+++..|..+.
T Consensus 266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 999999999 7788899999999999999999988776554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.9e-23 Score=183.01 Aligned_cols=207 Identities=24% Similarity=0.316 Sum_probs=171.5
Q ss_pred ECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCC
Q 036666 102 NLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLN 181 (350)
Q Consensus 102 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 181 (350)
.+..+.+.+.. .+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.+.
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCC
Confidence 34445554332 24568899999999999984 44 5889999999999999998544 4 899999999999999988
Q ss_pred CCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccc
Q 036666 182 GSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEI 261 (350)
Q Consensus 182 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 261 (350)
+. ..+..+++|++|++++|. +... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~-l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l 169 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQ-ITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L 169 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSC-CCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred Cc--hhhcCCCCCCEEECCCCC-CCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h
Confidence 53 368899999999999998 4443 2 38899999999999999986543 8899999999999999865433 8
Q ss_pred cCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcc
Q 036666 262 GLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSG 327 (350)
Q Consensus 262 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 327 (350)
..+++|+.|++++|.+++.. . +..+++|++|++++|++.+.. .+..+++|+.|++++|++++
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDIS-P-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEECCCCccCcCh-h-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 88999999999999998543 3 788999999999999998655 37889999999999999984
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.1e-25 Score=201.94 Aligned_cols=250 Identities=16% Similarity=0.142 Sum_probs=169.7
Q ss_pred EEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCC----cccCCCC-CCCEEEccCCCCCCCCCccCCCC-----CC
Q 036666 100 LLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIP----EELGQLS-LLQFLFLNTNRLSGSIPPQLANL-----TS 169 (350)
Q Consensus 100 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l-----~~ 169 (350)
+++++.|.+++.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677788877776655556668888888888876555 5667777 78888888888876656555543 78
Q ss_pred CCEEEcccCcCCCCCCcc----CCCC-CCCCEEeccCCCCCcccCChh----hcC-CCCcCeeecccccCcCCCC----c
Q 036666 170 LQVLCLQDNLLNGSIPSQ----LGSL-VSLQQFRIGGNPYLTGEIPTQ----LGM-LTNLTTFGAAATGLSGVIP----P 235 (350)
Q Consensus 170 L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~~----~ 235 (350)
|++|++++|.+++..+.. +... ++|++|++++|. +....+.. +.. .++|++|++++|.+++... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 888888888877555443 3334 678888888887 55544433 333 3588888888888775433 3
Q ss_pred cccCCC-cCceEeecccccccCCcccc----cCC-CCCCeEEccCCcCccc----CChhhhC-CCCCCEEeccCccCccc
Q 036666 236 TFGNLI-NLQTLALYDTEVFGSIPPEI----GLC-SELRNLYLHMNKLTGS----IPSELGK-LQKLTSLLLWGNTLSGP 304 (350)
Q Consensus 236 ~l~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~~~~~ 304 (350)
.+...+ +|++|++++|.+.+..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334444 78888888888876665433 334 4888888888888752 3444444 45888888888888764
Q ss_pred CC----ccCcCCCCCCEEEccCCcCccc-------CCccccCCCCCCEEeCcCCCCC
Q 036666 305 IP----AELSNCSALVVLDASANDLSGE-------LPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 305 ~~----~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
.+ ..+..+++|+.|++++|.+.+. ++..+..+++|++||+++|++.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 33 3345677888888888874422 2335667777888888888763
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1e-22 Score=178.31 Aligned_cols=194 Identities=25% Similarity=0.325 Sum_probs=166.9
Q ss_pred CCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCE
Q 036666 93 SSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQV 172 (350)
Q Consensus 93 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 172 (350)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCE
Confidence 357899999999999984 44 58899999999999999985443 89999999999999999853 3 6899999999
Q ss_pred EEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccc
Q 036666 173 LCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTE 252 (350)
Q Consensus 173 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 252 (350)
|++++|.+.+. + .+..+++|++|++++|. +....+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 99999999863 3 38899999999999998 444333 8899999999999999986543 8899999999999999
Q ss_pred cccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcc
Q 036666 253 VFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSG 303 (350)
Q Consensus 253 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 303 (350)
+.+..+ +..+++|++|++++|++++.. .+..+++|+.|++++|.+++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 966543 788999999999999999554 37899999999999999974
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=3e-22 Score=165.35 Aligned_cols=184 Identities=22% Similarity=0.264 Sum_probs=132.5
Q ss_pred CCCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCC
Q 036666 58 TPCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIP 137 (350)
Q Consensus 58 ~~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 137 (350)
..|.|.++.|... ++ ..+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+.+..+
T Consensus 5 C~C~~~~v~c~~~-----------~l--~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYSQ-----------GR--TSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCSS-----------CC--SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecCC-----------Cc--cCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 3477888888632 22 44555443 689999999999987777778889999999999999986666
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCC
Q 036666 138 EELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLT 217 (350)
Q Consensus 138 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~ 217 (350)
..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|. +....+..+..++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCC
Confidence 677889999999999999886666667888899999999888886666667777788888887776 4444444556666
Q ss_pred CcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCC
Q 036666 218 NLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLC 264 (350)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 264 (350)
+|++|++++|.+.+ .++.|+.|+++.|.+.+.+|..++.+
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 66666666665442 23455556666666655555554433
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=1e-21 Score=175.11 Aligned_cols=231 Identities=19% Similarity=0.174 Sum_probs=178.0
Q ss_pred CCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCC-cccCCCCCCCE-EEccCCCCCCCCCcc
Q 036666 86 SALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIP-EELGQLSLLQF-LFLNTNRLSGSIPPQ 163 (350)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~-L~L~~n~~~~~~~~~ 163 (350)
+.+|..+. +++++|+|++|+++...+..|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+..|+++...|..
T Consensus 22 t~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 22 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp CSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 56777663 689999999999997767789999999999999999865554 57889998876 556678898777888
Q ss_pred CCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCC-CcCeeecccccCcCCCCccccCCCc
Q 036666 164 LANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLT-NLTTFGAAATGLSGVIPPTFGNLIN 242 (350)
Q Consensus 164 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~ 242 (350)
|..+++|++|++++|++....+..+....++..+++.++..+.......+..+. .++.|++++|.++...+..+ ...+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~ 178 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQ 178 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccc
Confidence 999999999999999998776666777778889998775435554455555554 68889999999986544444 5578
Q ss_pred CceEeecccccccCCc-ccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEcc
Q 036666 243 LQTLALYDTEVFGSIP-PEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDAS 321 (350)
Q Consensus 243 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 321 (350)
|+++++.+++..+.+| ..|..+++|++|++++|+++ .+|. ..+.+|+.|.+.++.--..+| .+..+++|+.+++.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 9999998644444444 56788999999999999998 4443 235677777776655444666 37788999999987
Q ss_pred CC
Q 036666 322 AN 323 (350)
Q Consensus 322 ~n 323 (350)
++
T Consensus 255 ~~ 256 (350)
T 4ay9_X 255 YP 256 (350)
T ss_dssp CH
T ss_pred CC
Confidence 65
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=1.7e-21 Score=173.81 Aligned_cols=240 Identities=16% Similarity=0.073 Sum_probs=185.6
Q ss_pred CEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCC-ccCCCCCCCCE-EEcc
Q 036666 99 QLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIP-PQLANLTSLQV-LCLQ 176 (350)
Q Consensus 99 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~-L~l~ 176 (350)
++++.++++++ .+|..+ .+++++|+|++|.++...+.+|.++++|++|+|++|++.+.++ ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34566666776 566555 3689999999999996666789999999999999999876555 46788998876 5666
Q ss_pred cCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeeccc-ccCcCCCCccccCCC-cCceEeecccccc
Q 036666 177 DNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAA-TGLSGVIPPTFGNLI-NLQTLALYDTEVF 254 (350)
Q Consensus 177 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~~~~~ 254 (350)
.|++....+..+..+++|++|++++|. +....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 788988888899999999999999998 5555555566667788888866 456655555666654 6899999999997
Q ss_pred cCCcccccCCCCCCeEEccC-CcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccc
Q 036666 255 GSIPPEIGLCSELRNLYLHM-NKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDL 333 (350)
Q Consensus 255 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 333 (350)
...+..+ ...+|++|++.+ |.++...+..|..+++|++|++++|+++...+. .+.+|+.|.+.++.-...+| .+
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CT
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-Cc
Confidence 6555444 457899999985 666644445789999999999999999954433 35678888877775555777 48
Q ss_pred cCCCCCCEEeCcCC
Q 036666 334 GKLVLLEQLHLSDN 347 (350)
Q Consensus 334 ~~l~~L~~L~l~~n 347 (350)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 88999999998753
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.2e-21 Score=159.16 Aligned_cols=149 Identities=25% Similarity=0.270 Sum_probs=86.0
Q ss_pred CEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccC
Q 036666 99 QLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDN 178 (350)
Q Consensus 99 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 178 (350)
+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46677777766 334322 356777777777777655556677777777777777777555555667777777777777
Q ss_pred cCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeeccc
Q 036666 179 LLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDT 251 (350)
Q Consensus 179 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 251 (350)
++.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 7665544445566666666666655 33333333444444444444444444333333333444444444433
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.1e-23 Score=200.94 Aligned_cols=278 Identities=15% Similarity=0.099 Sum_probs=174.9
Q ss_pred CCEEEEEcCCCCCC---CCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEe---------------------
Q 036666 71 NRVISLSLPDTFLN---LSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLD--------------------- 126 (350)
Q Consensus 71 ~~v~~l~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~--------------------- 126 (350)
..++.++++++.+. ...++..+.++++|++|++++|.+.+ ++..+..+++|++|+
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 46788888887763 11223344567888888888877653 233344444444444
Q ss_pred ------CCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCC-ccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEec
Q 036666 127 ------LSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIP-PQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRI 199 (350)
Q Consensus 127 ------L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 199 (350)
++++.. ..+|..+..+++|++|++++|.+++... ..+..+++|++|+++.+.....++.....+++|++|++
T Consensus 271 ~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 444322 2344455566677777777766543222 22456677777777632211122233345677888888
Q ss_pred cC----------CCCCccc-CChhhcCCCCcCeeecccccCcCCCCccccC-CCcCceEeec----ccccccC-----Cc
Q 036666 200 GG----------NPYLTGE-IPTQLGMLTNLTTFGAAATGLSGVIPPTFGN-LINLQTLALY----DTEVFGS-----IP 258 (350)
Q Consensus 200 ~~----------n~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~-----~~ 258 (350)
++ +..++.. +......+++|++|+++.+.+++..+..++. +++|++|++. .+.+++. ++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 73 3223332 2333456788888888777777665556654 7888888886 4445432 22
Q ss_pred ccccCCCCCCeEEccCCc--CcccCChhh-hCCCCCCEEeccCccCccc-CCccCcCCCCCCEEEccCCcCccc-CCccc
Q 036666 259 PEIGLCSELRNLYLHMNK--LTGSIPSEL-GKLQKLTSLLLWGNTLSGP-IPAELSNCSALVVLDASANDLSGE-LPGDL 333 (350)
Q Consensus 259 ~~~~~~~~L~~L~l~~n~--l~~~~~~~~-~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~ 333 (350)
..+..+++|+.|+++.|. +++..+..+ ..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++. ++..+
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 235568889999997543 554433333 4588999999999998763 445567789999999999998755 33344
Q ss_pred cCCCCCCEEeCcCCCCC
Q 036666 334 GKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 334 ~~l~~L~~L~l~~n~l~ 350 (350)
..+++|++|++++|+++
T Consensus 510 ~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHCSSCCEEEEESCBCC
T ss_pred HhcCccCeeECcCCcCC
Confidence 57899999999999875
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2e-20 Score=175.63 Aligned_cols=188 Identities=26% Similarity=0.375 Sum_probs=143.7
Q ss_pred CCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 036666 96 SSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCL 175 (350)
Q Consensus 96 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 175 (350)
.+++.|++++|.+++ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 378999999999986 66545 378999999999998 566 457899999999999996 666 654 8999999
Q ss_pred ccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeeccccccc
Q 036666 176 QDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFG 255 (350)
Q Consensus 176 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 255 (350)
++|.+++ +|. .+++|++|++++|. +.. ++. .+++|++|++++|.+++ +|. +. ++|+.|++++|.+.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~-l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQ-LTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCc-cCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 9999986 555 67889999999987 444 343 56788888888888876 455 55 78888888888876
Q ss_pred CCcccccCCCCC-------CeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCC
Q 036666 256 SIPPEIGLCSEL-------RNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNC 312 (350)
Q Consensus 256 ~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 312 (350)
.+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 4444 443 56 88888888887 567766678888888888888877766665543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=8.6e-20 Score=171.40 Aligned_cols=207 Identities=23% Similarity=0.338 Sum_probs=167.7
Q ss_pred CCCCCCCCCCC-----CcCce-eeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCC
Q 036666 50 SSWNPSNLTPC-----SWQGI-TCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLR 123 (350)
Q Consensus 50 ~~w~~~~~~~c-----~~~~~-~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 123 (350)
.+|. ....+| .|.++ .|. .++++.++++++.+. .+|..+. ++|++|++++|.++ .+| ..+++|+
T Consensus 34 ~~W~-~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~--~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~ 103 (571)
T 3cvr_A 34 DKWE-KQALPGENRNEAVSLLKECL-INQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALI-SLP---ELPASLE 103 (571)
T ss_dssp HHHH-TTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCS--CCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCC
T ss_pred HHHh-ccCCccccccchhhhccccc-cCCccEEEeCCCCCC--ccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCC
Confidence 3564 245667 58887 675 357999999999985 4887664 89999999999998 566 4579999
Q ss_pred eEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCC
Q 036666 124 LLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNP 203 (350)
Q Consensus 124 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 203 (350)
+|++++|.+.+ +|. +.. +|++|++++|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.
T Consensus 104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence 99999999996 666 655 99999999999996 565 67999999999999986 554 57899999999998
Q ss_pred CCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcC-------ceEeecccccccCCcccccCCCCCCeEEccCCc
Q 036666 204 YLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINL-------QTLALYDTEVFGSIPPEIGLCSELRNLYLHMNK 276 (350)
Q Consensus 204 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 276 (350)
+.. ++. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 172 -L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 172 -LTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred -CCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 554 554 54 89999999999998 5555 554 77 99999999996 567777779999999999999
Q ss_pred CcccCChhhhCC
Q 036666 277 LTGSIPSELGKL 288 (350)
Q Consensus 277 l~~~~~~~~~~~ 288 (350)
+++.+|..+..+
T Consensus 242 l~~~~p~~l~~l 253 (571)
T 3cvr_A 242 LSSRIRESLSQQ 253 (571)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 998888877654
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=1.7e-19 Score=150.88 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=127.4
Q ss_pred CCCCCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCC
Q 036666 56 NLTPCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGP 135 (350)
Q Consensus 56 ~~~~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~ 135 (350)
+...|.|.++.|... .+ +.+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+...
T Consensus 15 ~~~~Cs~~~v~c~~~-----------~l--~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK-----------RH--ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp TTCEEETTEEECTTS-----------CC--SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCEEeCCEeEccCC-----------Cc--CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence 557799998888632 12 56666554 8899999999999988888899999999999999999866
Q ss_pred CCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcC
Q 036666 136 IPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGM 215 (350)
Q Consensus 136 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 215 (350)
.+..|..+++|++|++++|++++..+..|..+++|++|++++|++. .+|..+..+++|++|++++|. +....+..+..
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 157 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDR 157 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc-CCccCHHHHhC
Confidence 6677889999999999999999777777888999999999999888 567777778888888888887 55555556667
Q ss_pred CCCcCeeecccccCcCC
Q 036666 216 LTNLTTFGAAATGLSGV 232 (350)
Q Consensus 216 ~~~L~~L~l~~~~~~~~ 232 (350)
+++|+.|++++|.+...
T Consensus 158 l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CTTCCEEECTTSCBCTT
T ss_pred CCCCCEEEeeCCCccCC
Confidence 77777777777766543
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.3e-22 Score=193.61 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=63.9
Q ss_pred CCcCceEeecccccccCCcccccC-CCCCCeEEcc----CCcCccc-----CChhhhCCCCCCEEeccCcc--CcccCCc
Q 036666 240 LINLQTLALYDTEVFGSIPPEIGL-CSELRNLYLH----MNKLTGS-----IPSELGKLQKLTSLLLWGNT--LSGPIPA 307 (350)
Q Consensus 240 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~~ 307 (350)
+++|++|++..+.+++..+..+.. +++|++|+++ .|.+++. ++..+.++++|++|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 444555555444443333333332 5566666664 3444432 22234556677777775432 4433333
Q ss_pred cC-cCCCCCCEEEccCCcCccc-CCccccCCCCCCEEeCcCCCCC
Q 036666 308 EL-SNCSALVVLDASANDLSGE-LPGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 308 ~~-~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 350 (350)
.+ ..+++|+.|++++|++++. ++..+..+++|++|++++|+++
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 33 2478889999998888763 3445577899999999999864
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=3.8e-19 Score=147.81 Aligned_cols=151 Identities=24% Similarity=0.291 Sum_probs=123.3
Q ss_pred EEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCC
Q 036666 75 SLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTN 154 (350)
Q Consensus 75 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 154 (350)
.++.+++.+ ..+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l--~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGL--TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCC--SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCc--CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 345555555 56777665 78999999999999877778999999999999999999888889999999999999999
Q ss_pred CCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCc
Q 036666 155 RLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLS 230 (350)
Q Consensus 155 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (350)
.++...+..|..+++|++|++++|++.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9996666668889999999999999988778888888888888888887 55555556667777777777777654
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.6e-19 Score=150.09 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=88.0
Q ss_pred CEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecc
Q 036666 171 QVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYD 250 (350)
Q Consensus 171 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 250 (350)
+.++.+++.++ .+|..+. ++++.|++++|. +....+..+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 46667776666 3444332 466666666666 4444444556666666666666666655555566666666666666
Q ss_pred cccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 251 TEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
|.+.+..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6655444444555566666666666665555555555566666666666665555555555555666666655553
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.1e-19 Score=157.58 Aligned_cols=191 Identities=21% Similarity=0.283 Sum_probs=156.4
Q ss_pred CCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEecc
Q 036666 121 HLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIG 200 (350)
Q Consensus 121 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 200 (350)
++..+.+..+.+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|++.+..+ +..+++|++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 3444556666655432 245789999999999999844 3 48889999999999999986443 8899999999999
Q ss_pred CCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCccc
Q 036666 201 GNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGS 280 (350)
Q Consensus 201 ~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 280 (350)
+|. +.. ...+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.
T Consensus 99 ~n~-l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 99 ENK-VKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp SSC-CCC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCc-CCC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 998 443 23488999999999999999874 4688899999999999998765 5688899999999999999865
Q ss_pred CChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCccc
Q 036666 281 IPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGE 328 (350)
Q Consensus 281 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 328 (350)
.+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++..
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 44 88999999999999999854 3 478899999999999998753
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=7.2e-20 Score=173.68 Aligned_cols=191 Identities=23% Similarity=0.357 Sum_probs=155.3
Q ss_pred CCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccc
Q 036666 98 LQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQD 177 (350)
Q Consensus 98 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 177 (350)
+..+.+..+.+....+ +..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445666666664432 5678999999999999884 44 58899999999999999996544 88999999999999
Q ss_pred CcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCC
Q 036666 178 NLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSI 257 (350)
Q Consensus 178 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 257 (350)
|.+.+ ++ .+..+++|+.|++++|. +.. ...+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~-l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNG-ISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSC-CCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCC-CCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 99875 33 68889999999999998 443 24588899999999999998875 57888999999999999887665
Q ss_pred cccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccC
Q 036666 258 PPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPI 305 (350)
Q Consensus 258 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 305 (350)
| +..+++|+.|++++|.+++ + ..+..+++|+.|+|++|.+.+..
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCC
T ss_pred h--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCc
Confidence 5 7888999999999999885 3 35788899999999999887543
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=148.90 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=105.7
Q ss_pred CEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccC-ChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeec
Q 036666 171 QVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEI-PTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALY 249 (350)
Q Consensus 171 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 249 (350)
+.+++++|.++. +|..+ ...+++|++++|. +.... ...+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 578888888774 45433 2346788888877 44442 3456777777777777777776666667777777777777
Q ss_pred ccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcc
Q 036666 250 DTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSG 327 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 327 (350)
+|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 777766666667777777777777777776666667777777777777777776666677777777777777776654
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.5e-19 Score=171.40 Aligned_cols=174 Identities=25% Similarity=0.366 Sum_probs=150.8
Q ss_pred CCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCC
Q 036666 92 LSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQ 171 (350)
Q Consensus 92 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 171 (350)
+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 3467899999999999984 34 58899999999999999986544 8899999999999999985 33 689999999
Q ss_pred EEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeeccc
Q 036666 172 VLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDT 251 (350)
Q Consensus 172 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 251 (350)
+|++++|.+.+. ..+..+++|+.|++++|. +... ..+..+++|+.|++++|.+++..| +..+++|+.|++++|
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSC-CCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCc-cCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 999999999853 458899999999999998 4443 678999999999999999997765 899999999999999
Q ss_pred ccccCCcccccCCCCCCeEEccCCcCccc
Q 036666 252 EVFGSIPPEIGLCSELRNLYLHMNKLTGS 280 (350)
Q Consensus 252 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 280 (350)
.+.+. +.+..+++|+.|++++|.+.+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 99764 4588999999999999999854
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=8.9e-20 Score=163.28 Aligned_cols=176 Identities=22% Similarity=0.203 Sum_probs=100.6
Q ss_pred CEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCC-CCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecc
Q 036666 147 QFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLG-SLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAA 225 (350)
Q Consensus 147 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~ 225 (350)
+.++++++.++ .+|..+. +.++.|++++|++++..+..+. .+++|++|++++|. +....+..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECC
Confidence 57778877777 4555443 4577788888877766666565 67777777777776 454445556666666666666
Q ss_pred cccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhh---hCCCCCCEEeccCccCc
Q 036666 226 ATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSEL---GKLQKLTSLLLWGNTLS 302 (350)
Q Consensus 226 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~~~ 302 (350)
+|.++...+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 666655555555555566666666655555555555555555555555555553222222 34555555555555555
Q ss_pred ccCCccCcCCCC--CCEEEccCCcCc
Q 036666 303 GPIPAELSNCSA--LVVLDASANDLS 326 (350)
Q Consensus 303 ~~~~~~~~~~~~--L~~L~l~~n~l~ 326 (350)
+..+..+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 333334444443 244555555443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=8.2e-19 Score=145.80 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=124.8
Q ss_pred EEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCC-cCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccC
Q 036666 75 SLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIP-PSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNT 153 (350)
Q Consensus 75 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 153 (350)
.++++++.+ +.+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 15 ~l~~s~n~l--~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKL--NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCc--ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 667777776 56777664 567899999999987754 4578899999999999999977777899999999999999
Q ss_pred CCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCC
Q 036666 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGV 232 (350)
Q Consensus 154 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 232 (350)
|.+++..+..|..+++|++|++++|++.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99998777778899999999999999988778888888888888888887 5666666777777777777777776543
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.6e-19 Score=154.44 Aligned_cols=170 Identities=26% Similarity=0.376 Sum_probs=101.0
Q ss_pred CCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEE
Q 036666 94 SLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVL 173 (350)
Q Consensus 94 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 173 (350)
.+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 456777777777777643 3 36677777777777777774333 6777777777777777764 22 36677777777
Q ss_pred EcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeeccccc
Q 036666 174 CLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEV 253 (350)
Q Consensus 174 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 253 (350)
++++|++.+. ..+..+++|++|++++|. +... ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 7777776642 345556666666666665 2222 345555555555555555554332 45555555555555555
Q ss_pred ccCCcccccCCCCCCeEEccCCcCc
Q 036666 254 FGSIPPEIGLCSELRNLYLHMNKLT 278 (350)
Q Consensus 254 ~~~~~~~~~~~~~L~~L~l~~n~l~ 278 (350)
.+. + .+..+++|+.|++++|.++
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCC-h-hhccCCCCCEEECcCCccc
Confidence 332 2 2444555555555555544
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=3.6e-19 Score=159.36 Aligned_cols=175 Identities=23% Similarity=0.219 Sum_probs=146.5
Q ss_pred EEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCC-CCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccC
Q 036666 75 SLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFG-QLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNT 153 (350)
Q Consensus 75 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 153 (350)
.++++++.+ ..+|..+. +.+++|+|++|.+++..+..|. .+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 22 ~l~c~~~~l--~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQL--PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCC--SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCc--CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 566777766 56777665 5689999999999988888787 899999999999999987778899999999999999
Q ss_pred CCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhh---cCCCCcCeeecccccCc
Q 036666 154 NRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQL---GMLTNLTTFGAAATGLS 230 (350)
Q Consensus 154 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l---~~~~~L~~L~l~~~~~~ 230 (350)
|+++...+..|..+++|++|++++|++....+..+..+++|++|++++|. +.......+ ..+++|+.|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99997777789999999999999999998888889999999999999998 555444444 56899999999999998
Q ss_pred CCCCccccCCCc--CceEeecccccc
Q 036666 231 GVIPPTFGNLIN--LQTLALYDTEVF 254 (350)
Q Consensus 231 ~~~~~~l~~~~~--L~~L~l~~~~~~ 254 (350)
...+..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 776667777776 488899888764
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=8.3e-19 Score=146.73 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=110.3
Q ss_pred CCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeec
Q 036666 170 LQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALY 249 (350)
Q Consensus 170 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 249 (350)
-+.++.+++.+. .+|..+ .++|++|++++|. +....+..+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456777777766 344433 2677888888877 566666677777778888888777766655666777777777777
Q ss_pred ccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCccc
Q 036666 250 DTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGE 328 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 328 (350)
+|.+.+..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+...
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 77776666666677777777777777777 6666677777777777777777765556677777777777777777643
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=5.4e-19 Score=144.40 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=78.9
Q ss_pred hcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCC
Q 036666 213 LGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLT 292 (350)
Q Consensus 213 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 292 (350)
+..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 3344444444444443321 22455566666666666666555555566666777777777776665566666777777
Q ss_pred EEeccCcc-CcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 293 SLLLWGNT-LSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 293 ~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
+|++++|. +. .++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 140 ~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 140 SIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 77777776 44 333 46666777777777777764 33 566677777777777765
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=2.3e-20 Score=181.26 Aligned_cols=262 Identities=22% Similarity=0.198 Sum_probs=125.8
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcCceeeCCCCCEEEEEcCCCCCCCCCCCccCCCCCCCCEE-
Q 036666 23 SLSPDGEALLSLISAAGPSAKASSSILSSWNPSNLTPCSWQGITCSPQNRVISLSLPDTFLNLSALPPQLSSLSSLQLL- 101 (350)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~c~~~~~~c~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L- 101 (350)
....++.++.++.....+ ..+.....|.......+.|.+..+.. ++++.+++.++.+. ..+..+.....|..+
T Consensus 129 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~--~~~~~~l~~l~Ls~~~ 202 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTD---SKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFANGKD--EANQALLQHKKLSQYS 202 (727)
T ss_dssp ---CCCHHHHHHHHHHHH---HHTTC------------------------------------------------------
T ss_pred ccccchhhhhhhhhhccc---ccCcccCCCcCCCCccccCCCceecC-CccceEEeeCCCCC--cchhhHhhcCccCccc
Confidence 345677788888877752 22333456654555556787776653 67899999888774 234333222222222
Q ss_pred ----ECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccc
Q 036666 102 ----NLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQD 177 (350)
Q Consensus 102 ----~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 177 (350)
++..|.+. ..+..|..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++
T Consensus 203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 22233333 45677888899999999999988 67777778999999999999998 7788888999999999999
Q ss_pred CcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCc-CceEeecccccccC
Q 036666 178 NLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLIN-LQTLALYDTEVFGS 256 (350)
Q Consensus 178 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~ 256 (350)
|.+. .+|..+..+++|++|+|++|. +. .+|..++.+++|+.|++++|.+++.+|..+..... +..+++.+|.+.+.
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNM-VT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSC-CC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCC-CC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 9988 678888889999999999887 43 56667888889999999999888877776654322 23467788887776
Q ss_pred CcccccCCCCCCeEEccCC--------cCcccCChhhhCCCCCCEEeccCccCc
Q 036666 257 IPPEIGLCSELRNLYLHMN--------KLTGSIPSELGKLQKLTSLLLWGNTLS 302 (350)
Q Consensus 257 ~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~~~~~~~L~~L~l~~n~~~ 302 (350)
+|. .|+.|+++.| .+.+..+..+..+.+++...+++|.+.
T Consensus 357 ~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 357 LPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCC------C-----------------------------------------CCC
T ss_pred Ccc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 664 3445555555 222222333344555556666666553
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2.1e-19 Score=158.82 Aligned_cols=241 Identities=12% Similarity=0.071 Sum_probs=153.2
Q ss_pred CCCCCEEECCCCcCC--cCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCC--------CCCCCEEEccCCCCCCCCCccC
Q 036666 95 LSSLQLLNLSSTNIS--GIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQ--------LSLLQFLFLNTNRLSGSIPPQL 164 (350)
Q Consensus 95 ~~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~l 164 (350)
+++|++|+|++|++. ......+ +.++.+.+..+.+. +.+|.+ +++|+++++.+ .++...+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 678899999988887 2111111 11333333333222 234444 66666666665 5554444456
Q ss_pred CCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCC---CcccCChhhcCC-------------------------
Q 036666 165 ANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPY---LTGEIPTQLGML------------------------- 216 (350)
Q Consensus 165 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~---~~~~~~~~l~~~------------------------- 216 (350)
.++++|+.+++..|.+....+..|..+.++..+....... ........+..+
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 6666666666666655544555555555555444433110 000011112222
Q ss_pred -CCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCC-EE
Q 036666 217 -TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLT-SL 294 (350)
Q Consensus 217 -~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L 294 (350)
.++..+.+.++-...........+++|+.+++++|++.......|.++.+|+.+++.+| ++...+..|.++++|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 33334444332111111111123789999999999998877788999999999999998 7766677899999999 99
Q ss_pred eccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeC
Q 036666 295 LLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHL 344 (350)
Q Consensus 295 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 344 (350)
++.+ .++...+.+|.++++|+.+++++|.++...+.+|.++++|+.|+.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9988 777778889999999999999999999888889999999999874
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1e-18 Score=142.78 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=49.1
Q ss_pred CCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCc-CcccCChhhhCCCCCCEEe
Q 036666 217 TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNK-LTGSIPSELGKLQKLTSLL 295 (350)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 295 (350)
++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|. ++ .+| .+..+++|++|+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLN 165 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEE
Confidence 333333333333333333344444444444444444444444444455555555555554 33 333 345555555555
Q ss_pred ccCccCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 296 LWGNTLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 296 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
+++|.+.+. + .+..+++|+.|++++|++.
T Consensus 166 l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 166 IQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 555555532 2 3445555555555555544
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=1.2e-21 Score=187.09 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCCCCCeEEccCCcCcccCChhhhC-CCCCCEEeccCccCcccCCccC-cCCCCCCEEEccCCcCcccCCc-cccCCCCC
Q 036666 263 LCSELRNLYLHMNKLTGSIPSELGK-LQKLTSLLLWGNTLSGPIPAEL-SNCSALVVLDASANDLSGELPG-DLGKLVLL 339 (350)
Q Consensus 263 ~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L 339 (350)
.+++|+.|++++ .+++..+..+.. +++|++|++++|.+++.....+ ..+++|+.|++++|.+++.... .+..+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 344455555543 333222222322 5666777776666654433333 4567777777777777544332 23346777
Q ss_pred CEEeCcCCCC
Q 036666 340 EQLHLSDNML 349 (350)
Q Consensus 340 ~~L~l~~n~l 349 (350)
++|++++|++
T Consensus 509 ~~L~l~~~~~ 518 (594)
T 2p1m_B 509 RSLWMSSCSV 518 (594)
T ss_dssp SEEEEESSCC
T ss_pred CEEeeeCCCC
Confidence 7777777765
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.5e-21 Score=184.81 Aligned_cols=278 Identities=14% Similarity=0.092 Sum_probs=174.9
Q ss_pred CCEEEEEcCCC-CCCCCCCCccCCCCCCCCEEECCCCcCCcCCCc----CCCCCCCCCeEeCCCCC--CCCC-CCcccCC
Q 036666 71 NRVISLSLPDT-FLNLSALPPQLSSLSSLQLLNLSSTNISGIIPP----SFGQLTHLRLLDLSSNS--LSGP-IPEELGQ 142 (350)
Q Consensus 71 ~~v~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~~~--~~~~-~~~~~~~ 142 (350)
..++.++++++ .+....++....++++|++|++++|.+++..+. ....+++|++|++++|. +... ++..+..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 36777777776 332112333344677788888887776543322 22356677777777775 1100 0111233
Q ss_pred CCCCCEEEccCCC--------------------------------------------------CCCC----CCccCCCCC
Q 036666 143 LSLLQFLFLNTNR--------------------------------------------------LSGS----IPPQLANLT 168 (350)
Q Consensus 143 l~~L~~L~L~~n~--------------------------------------------------~~~~----~~~~l~~l~ 168 (350)
+++|++|++++|. +... ++..+..++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 5666666666551 1111 111122468
Q ss_pred CCCEEEcccCcCCCC-CCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeeccc---------ccCcCCCCccc-
Q 036666 169 SLQVLCLQDNLLNGS-IPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAA---------TGLSGVIPPTF- 237 (350)
Q Consensus 169 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~---------~~~~~~~~~~l- 237 (350)
+|++|++++|.+... +...+..+++|++|++.+|- ....+......+++|++|++.. +.+++.....+
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI-EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG-HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc-CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 999999999986532 22235678999999999872 2222333445689999998843 34443222233
Q ss_pred cCCCcCceEeecccccccCCccccc-CCCCCCeEEcc--C----CcCccc-----CChhhhCCCCCCEEeccCccCcccC
Q 036666 238 GNLINLQTLALYDTEVFGSIPPEIG-LCSELRNLYLH--M----NKLTGS-----IPSELGKLQKLTSLLLWGNTLSGPI 305 (350)
Q Consensus 238 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~ 305 (350)
..+++|++|.+..+.+++.....+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 3478899998888877655444443 57899999998 3 455521 223367788999999977 666554
Q ss_pred CccCcC-CCCCCEEEccCCcCcccCCccc-cCCCCCCEEeCcCCCCC
Q 036666 306 PAELSN-CSALVVLDASANDLSGELPGDL-GKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 306 ~~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~ 350 (350)
+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|+++
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 444444 7889999999999887655555 56899999999999874
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=7.4e-22 Score=186.17 Aligned_cols=204 Identities=20% Similarity=0.186 Sum_probs=139.4
Q ss_pred CCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCC-------------CCCCCCccCCCCCCCCEEE-cccCcCCC
Q 036666 117 GQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNR-------------LSGSIPPQLANLTSLQVLC-LQDNLLNG 182 (350)
Q Consensus 117 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~~~~ 182 (350)
..++.|+.|++++|.+. .+|..++.+++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 34556666666666665 556666666666666664442 2222333333344444443 222221
Q ss_pred CCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCccccc
Q 036666 183 SIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIG 262 (350)
Q Consensus 183 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 262 (350)
..|+.+.+.+|. +.. +. ...|+.|++++|.+++ +|. ++.+++|+.|++++|.+. .+|..++
T Consensus 423 ---------~~L~~l~l~~n~-i~~-----l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 423 ---------DDLRSKFLLENS-VLK-----ME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ---------HHHHHHHHHHHH-HHH-----HH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ---------chhhhhhhhccc-ccc-----cC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 112222222222 111 11 1258889999999886 455 889999999999999986 6788899
Q ss_pred CCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccC-CccCcCCCCCCEEEccCCcCcccCCc---cccCCCC
Q 036666 263 LCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPI-PAELSNCSALVVLDASANDLSGELPG---DLGKLVL 338 (350)
Q Consensus 263 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~ 338 (350)
.+++|+.|++++|.+++ +| .++.+++|++|++++|.+++.. |..+..+++|+.|++++|.+++..|. .+..+++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 99999999999999995 66 7899999999999999999776 89999999999999999999866553 2334789
Q ss_pred CCEEeC
Q 036666 339 LEQLHL 344 (350)
Q Consensus 339 L~~L~l 344 (350)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 999875
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=9.4e-18 Score=133.36 Aligned_cols=132 Identities=21% Similarity=0.182 Sum_probs=90.2
Q ss_pred CCCcCeeecccccCc-CCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEE
Q 036666 216 LTNLTTFGAAATGLS-GVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSL 294 (350)
Q Consensus 216 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 294 (350)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356666777766665 45566666677777777777776544 556667777777777777776566666667777777
Q ss_pred eccCccCcccC-CccCcCCCCCCEEEccCCcCcccCC---ccccCCCCCCEEeCcCCCC
Q 036666 295 LLWGNTLSGPI-PAELSNCSALVVLDASANDLSGELP---GDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 295 ~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l 349 (350)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 77777776432 2566677777777777777775444 3667777777777777765
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.5e-18 Score=146.83 Aligned_cols=171 Identities=19% Similarity=0.213 Sum_probs=142.3
Q ss_pred CCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCe
Q 036666 142 QLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTT 221 (350)
Q Consensus 142 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~ 221 (350)
.+.+++.++++++.+++. + .+..+++|++|++++|.+.. ++ .+..+++|++|++++|. +.+..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCc-cCCChh--hccCCCCCE
Confidence 456677888999888843 3 57788999999999999884 44 67889999999999998 554433 889999999
Q ss_pred eecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccC
Q 036666 222 FGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTL 301 (350)
Q Consensus 222 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 301 (350)
|++++|.+++.. . +.. ++|++|++++|.+.+. +.+..+++|+.|++++|++++. + .+..+++|++|++++|.+
T Consensus 90 L~L~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKNLN-G-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSCCT-T-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCCcC-c-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 999999998643 2 333 8999999999998764 3588999999999999999854 4 688899999999999999
Q ss_pred cccCCccCcCCCCCCEEEccCCcCccc
Q 036666 302 SGPIPAELSNCSALVVLDASANDLSGE 328 (350)
Q Consensus 302 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ 328 (350)
.+. ..+..+++|+.|++++|.+++.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 866 6688899999999999998855
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.3e-17 Score=134.05 Aligned_cols=108 Identities=25% Similarity=0.268 Sum_probs=55.4
Q ss_pred cCceEeecccccccCCcc-cccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEc
Q 036666 242 NLQTLALYDTEVFGSIPP-EIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDA 320 (350)
Q Consensus 242 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 320 (350)
.+++|++++|.+.+..+. .+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 445555555554433332 2444555555555555555444455555555555555555555444444555555555555
Q ss_pred cCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 321 SANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
++|++++..|..|..+++|++|++++|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 55555555555555555555555555544
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3.4e-18 Score=146.04 Aligned_cols=169 Identities=21% Similarity=0.280 Sum_probs=115.9
Q ss_pred CCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEE
Q 036666 95 LSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLC 174 (350)
Q Consensus 95 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 174 (350)
+.+++.++++++.+++.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 345666777788777443 4677888888888888887 344 57788888888888888885433 78888888888
Q ss_pred cccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccc
Q 036666 175 LQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVF 254 (350)
Q Consensus 175 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 254 (350)
+++|++.+ ++... . ++|++|++++|. +.+. ..+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+.
T Consensus 92 L~~N~l~~-l~~~~-~-~~L~~L~L~~N~-l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP-S-ACLSRLFLDNNE-LRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSC-CTTCC-C-SSCCEEECCSSC-CSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred CCCCccCC-cCccc-c-CcccEEEccCCc-cCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 88888875 33322 2 777788887776 3332 2466677777777777776654 2 4666666777777666665
Q ss_pred cCCcccccCCCCCCeEEccCCcCcc
Q 036666 255 GSIPPEIGLCSELRNLYLHMNKLTG 279 (350)
Q Consensus 255 ~~~~~~~~~~~~L~~L~l~~n~l~~ 279 (350)
+. ..+..+++|+.|++++|.++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch--HHhccCCCCCEEeCCCCcccC
Confidence 54 445666666666666666653
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=6.7e-16 Score=139.48 Aligned_cols=245 Identities=11% Similarity=0.072 Sum_probs=183.9
Q ss_pred cCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCC
Q 036666 91 QLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSL 170 (350)
Q Consensus 91 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 170 (350)
+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+..+.+.+|.+|++|+.+++..|+++......|. ..+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 45554 6888888765 665666777774 699999886 56656667888999999999988888855455555 5889
Q ss_pred CEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecc
Q 036666 171 QVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYD 250 (350)
Q Consensus 171 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 250 (350)
+.+.+..+ +.......|.++++|+.+.+..+ +.......|.+ .+|+.+.+. +.++......|.++++|+.+.+.+
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 99988754 55566678888899999998775 44444555666 688888884 446656667888899999999988
Q ss_pred cccc-----cCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcC
Q 036666 251 TEVF-----GSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDL 325 (350)
Q Consensus 251 ~~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 325 (350)
+... ......|.+|++|+.+.+.+ .++......|.+|++|+.+.|..+ ++.....+|.++ +|+.+++.+|.+
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 7654 34556788899999999884 466566678888999999999655 665677788888 899999999988
Q ss_pred cccCCccccCCC-CCCEEeCcCCC
Q 036666 326 SGELPGDLGKLV-LLEQLHLSDNM 348 (350)
Q Consensus 326 ~~~~~~~~~~l~-~L~~L~l~~n~ 348 (350)
....+..|..++ +++.|++..+.
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cccccccccCCCCCccEEEeCHHH
Confidence 766667777774 77888876553
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.4e-17 Score=129.55 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=108.9
Q ss_pred CCCcCeeecccccCc-CCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEE
Q 036666 216 LTNLTTFGAAATGLS-GVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSL 294 (350)
Q Consensus 216 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 294 (350)
.++++.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 67777788889999999999988665 668888999999999999997688888889999999
Q ss_pred eccCccCccc-CCccCcCCCCCCEEEccCCcCcccCC---ccccCCCCCCEEeCcC
Q 036666 295 LLWGNTLSGP-IPAELSNCSALVVLDASANDLSGELP---GDLGKLVLLEQLHLSD 346 (350)
Q Consensus 295 ~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~ 346 (350)
++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999863 34778889999999999999987665 5788899999999874
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.9e-21 Score=182.07 Aligned_cols=139 Identities=20% Similarity=0.160 Sum_probs=110.3
Q ss_pred ccCChhhcCCCCcCeee-cccccCcCCCC-----ccccC--CCcCceEeecccccccCCcccccCCCCCCeEEccCCcCc
Q 036666 207 GEIPTQLGMLTNLTTFG-AAATGLSGVIP-----PTFGN--LINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLT 278 (350)
Q Consensus 207 ~~~~~~l~~~~~L~~L~-l~~~~~~~~~~-----~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 278 (350)
+..+..++.+++|+.|+ ++.+.+..... ..+.. ...|+.|++++|.+.+ +|. +..+++|+.|++++|.++
T Consensus 399 ~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred cCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 34455666666777666 44432211000 00100 1258999999999976 565 899999999999999999
Q ss_pred ccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccC-CccccCCCCCCEEeCcCCCCC
Q 036666 279 GSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGEL-PGDLGKLVLLEQLHLSDNMLT 350 (350)
Q Consensus 279 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 350 (350)
.+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|+++
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 889999999999999999999996 56 7899999999999999999877 999999999999999999874
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.4e-18 Score=166.01 Aligned_cols=218 Identities=19% Similarity=0.182 Sum_probs=105.5
Q ss_pred CCCCEEECCCCcCCcCCCcCCCCCCCCCeEeC-----CCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCC
Q 036666 96 SSLQLLNLSSTNISGIIPPSFGQLTHLRLLDL-----SSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSL 170 (350)
Q Consensus 96 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L-----~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 170 (350)
+.++.|+|.++.+... +..+....+|..+.+ ..|.+. ..+..|..++.|++|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5678888888888743 332322233333332 223333 44667788888888888888887 666666788888
Q ss_pred CEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecc
Q 036666 171 QVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYD 250 (350)
Q Consensus 171 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 250 (350)
++|+|++|.++ .+|..+..+++|++|+|++|. +. .+|..++.+++|++|++++|.++ .+|..|+.+++|+.|+|++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 88888888887 677778888888888888887 44 56777888888888888888876 5566688888888888888
Q ss_pred cccccCCcccccCCC-CCCeEEccCCcCcccCChhhhCCCCCCEEeccCc--------cCcccCCccCcCCCCCCEEEcc
Q 036666 251 TEVFGSIPPEIGLCS-ELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGN--------TLSGPIPAELSNCSALVVLDAS 321 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--------~~~~~~~~~~~~~~~L~~L~l~ 321 (350)
|.+.+.+|..+.... ....+++++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls 399 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS 399 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeee
Confidence 888777776654332 123467777877766654 4455566655 2222333333445555556666
Q ss_pred CCcCc
Q 036666 322 ANDLS 326 (350)
Q Consensus 322 ~n~l~ 326 (350)
+|.+.
T Consensus 400 ~Nil~ 404 (727)
T 4b8c_D 400 YNTLC 404 (727)
T ss_dssp --CCC
T ss_pred ccccc
Confidence 66554
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=2.7e-15 Score=135.54 Aligned_cols=241 Identities=12% Similarity=0.059 Sum_probs=194.2
Q ss_pred CCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEE
Q 036666 95 LSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLC 174 (350)
Q Consensus 95 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 174 (350)
+..++.+.+.+ .++..-..+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+....+..|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 36677777765 3554566778875 7999999877 665666788885 799999986 66656667899999999999
Q ss_pred cccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccc
Q 036666 175 LQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVF 254 (350)
Q Consensus 175 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 254 (350)
+..|++.......|. ..+|+.+.+..+ +.......|.++++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.+.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 999998866666666 689999999865 56666778999999999999875 55555566777 789999995 4455
Q ss_pred cCCcccccCCCCCCeEEccCCcCc-----ccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccC
Q 036666 255 GSIPPEIGLCSELRNLYLHMNKLT-----GSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGEL 329 (350)
Q Consensus 255 ~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 329 (350)
......|.+|++|+.+++.++.+. ...+..|.+|++|+.+.+.+ .+......+|.++.+|+.+.|.++ ++...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 666778999999999999988765 35567899999999999994 577677889999999999999665 77677
Q ss_pred CccccCCCCCCEEeCcCCCC
Q 036666 330 PGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 330 ~~~~~~l~~L~~L~l~~n~l 349 (350)
+.+|.++ +|+.+++++|.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSC
T ss_pred HHhCCCC-CCCEEEEcCCCC
Confidence 7899999 999999999875
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=2.9e-16 Score=127.52 Aligned_cols=126 Identities=26% Similarity=0.376 Sum_probs=106.7
Q ss_pred EEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCc-CCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEcc
Q 036666 74 ISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPP-SFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLN 152 (350)
Q Consensus 74 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 152 (350)
+.++++++.+ +.+|..+. .++++|++++|.+++..+. .|..+++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 11 ~~l~~s~~~l--~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC--SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc--CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4566666666 66777665 3899999999999866654 47889999999999999998888889999999999999
Q ss_pred CCCCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCC
Q 036666 153 TNRLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNP 203 (350)
Q Consensus 153 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 203 (350)
+|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999998777778889999999999999988888888888888888888887
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.4e-16 Score=126.58 Aligned_cols=132 Identities=22% Similarity=0.253 Sum_probs=79.8
Q ss_pred CCCCEEeccCCCCCc-ccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeE
Q 036666 192 VSLQQFRIGGNPYLT-GEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNL 270 (350)
Q Consensus 192 ~~L~~L~l~~n~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 270 (350)
++|++|++++|. +. +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 344444444444 22 23344444555555555555555544 455666666777777766665555555566777777
Q ss_pred EccCCcCcccC-ChhhhCCCCCCEEeccCccCcccCC---ccCcCCCCCCEEEccCCcCc
Q 036666 271 YLHMNKLTGSI-PSELGKLQKLTSLLLWGNTLSGPIP---AELSNCSALVVLDASANDLS 326 (350)
Q Consensus 271 ~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~ 326 (350)
++++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777776421 2566677777777777777775444 35667777777777777666
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.2e-16 Score=127.30 Aligned_cols=107 Identities=22% Similarity=0.289 Sum_probs=58.6
Q ss_pred cCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEcc
Q 036666 242 NLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDAS 321 (350)
Q Consensus 242 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 321 (350)
+|++|++++|.+. .+|..+..+++|+.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555553 333455555555555555555554444455555555555555555555555555555555555555
Q ss_pred CCcCcccCCccccCCCCCCEEeCcCCCC
Q 036666 322 ANDLSGELPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 322 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l 349 (350)
+|.+++..+..|..+++|+.|++++|++
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5555544444455555555555555553
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=7e-16 Score=123.57 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=65.9
Q ss_pred CCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEec
Q 036666 217 TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLL 296 (350)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 296 (350)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45666666666666555555566666666666666665544444556666666666666666444444555666666666
Q ss_pred cCccCcccCCccCcCCCCCCEEEccCCcCccc
Q 036666 297 WGNTLSGPIPAELSNCSALVVLDASANDLSGE 328 (350)
Q Consensus 297 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 328 (350)
++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 66666644444455566666666666665543
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=5.4e-17 Score=143.31 Aligned_cols=241 Identities=12% Similarity=0.069 Sum_probs=167.3
Q ss_pred CCEEEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCC--------CCCCCeEeCCCCCCCCCCCcccCC
Q 036666 71 NRVISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQ--------LTHLRLLDLSSNSLSGPIPEELGQ 142 (350)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~--------l~~L~~L~L~~~~~~~~~~~~~~~ 142 (350)
.+++.||++++.+...... -..++.++.+.+..+.+. ...|.+ +++|+.+++.+ .+..+.+.+|.+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp TTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred ccCeEEecCcceeEEecCc--cccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 4688888888876400111 112222344455555332 345666 88888888888 777666677888
Q ss_pred CCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcC----CCCCCccCCCCCCCC-----------------------
Q 036666 143 LSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLL----NGSIPSQLGSLVSLQ----------------------- 195 (350)
Q Consensus 143 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~~~~l~~L~----------------------- 195 (350)
|++|+++++.+|.+....+..|..+.++..+....+.. .......|..+..|+
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 88888888888877766666777766666666554221 111122233333333
Q ss_pred ---EEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCC-eEE
Q 036666 196 ---QFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELR-NLY 271 (350)
Q Consensus 196 ---~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~ 271 (350)
.+.+.++- ...........+++|++++++.|.++......|.++.+|+.+++.+| +.......|.++++|+ .++
T Consensus 203 ~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 203 DINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 33333321 11111112234899999999999999888889999999999999997 7677778899999999 999
Q ss_pred ccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEc
Q 036666 272 LHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDA 320 (350)
Q Consensus 272 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 320 (350)
+.+ .++...+..|.+|++|+.+++++|.+....+.+|.++++|+.++.
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 988 777666789999999999999999999888889999999999864
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=2.3e-15 Score=120.56 Aligned_cols=116 Identities=28% Similarity=0.391 Sum_probs=95.5
Q ss_pred CCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCC
Q 036666 86 SALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLA 165 (350)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 165 (350)
..+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.
T Consensus 20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 97 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97 (177)
T ss_dssp SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh
Confidence 45555443 6899999999999877777788899999999999999876666788899999999999999877776788
Q ss_pred CCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCC
Q 036666 166 NLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNP 203 (350)
Q Consensus 166 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 203 (350)
.+++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 98 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 88999999999998886666666778888888888887
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.7e-16 Score=123.44 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=59.9
Q ss_pred CCCCEEECCCCcCC-cCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEE
Q 036666 96 SSLQLLNLSSTNIS-GIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLC 174 (350)
Q Consensus 96 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 174 (350)
+++++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45555556666666666666666543 4455666666666666666654555455556666666
Q ss_pred cccCcCCCC-CCccCCCCCCCCEEeccCCC
Q 036666 175 LQDNLLNGS-IPSQLGSLVSLQQFRIGGNP 203 (350)
Q Consensus 175 l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~ 203 (350)
+++|.+.+. .+..+..+++|++|++++|+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 666655532 12344445555555555554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.7e-15 Score=122.94 Aligned_cols=125 Identities=26% Similarity=0.422 Sum_probs=106.1
Q ss_pred EEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCC
Q 036666 75 SLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTN 154 (350)
Q Consensus 75 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 154 (350)
.++++++.+ ..+|..+. +++++|++++|.++ .+|..|..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 14 ~l~~~~~~l--~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGL--KVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCC--SSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCC--CcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 466666666 56776654 68999999999998 66788899999999999999999877788999999999999999
Q ss_pred CCCCCCCccCCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCC
Q 036666 155 RLSGSIPPQLANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPY 204 (350)
Q Consensus 155 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 204 (350)
.+++..+..|..+++|++|++++|.++...+..+..+++|++|++++|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 99988778899999999999999999876666788888899999888873
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=8e-16 Score=123.12 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=71.8
Q ss_pred cCCCCcCeeecccccCcCCCCccccCC-CcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCC
Q 036666 214 GMLTNLTTFGAAATGLSGVIPPTFGNL-INLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLT 292 (350)
Q Consensus 214 ~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 292 (350)
..+++|+.|++++|.++.. +. +..+ ++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3344555555555555532 22 2222 2566666666655443 3455566666666666666644334445666666
Q ss_pred EEeccCccCcccCCc--cCcCCCCCCEEEccCCcCcccCCcc----ccCCCCCCEEeCcCCC
Q 036666 293 SLLLWGNTLSGPIPA--ELSNCSALVVLDASANDLSGELPGD----LGKLVLLEQLHLSDNM 348 (350)
Q Consensus 293 ~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~ 348 (350)
+|++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++||+++|.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666666664 3333 4556666666666666665 33432 5566666666666654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.4e-17 Score=136.02 Aligned_cols=131 Identities=18% Similarity=0.246 Sum_probs=87.6
Q ss_pred hhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCC
Q 036666 212 QLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKL 291 (350)
Q Consensus 212 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 291 (350)
.+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 56667777777777777765 44 6667777777777777764 455555556777777777777774 33 46667777
Q ss_pred CEEeccCccCcccCC-ccCcCCCCCCEEEccCCcCcccCCcc----------ccCCCCCCEEeCcCCCC
Q 036666 292 TSLLLWGNTLSGPIP-AELSNCSALVVLDASANDLSGELPGD----------LGKLVLLEQLHLSDNML 349 (350)
Q Consensus 292 ~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l 349 (350)
++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|.. +..+++|+.|| +|++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 777777777764322 35667777777777777776554432 66677777776 4443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=3.4e-14 Score=112.82 Aligned_cols=106 Identities=25% Similarity=0.236 Sum_probs=67.5
Q ss_pred cCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccC
Q 036666 219 LTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWG 298 (350)
Q Consensus 219 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 298 (350)
.+.++++++.++. +|..+ .+.|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3566777776664 33333 25666777777766666666666666677777777766655555556666677777777
Q ss_pred ccCcccCCccCcCCCCCCEEEccCCcCcc
Q 036666 299 NTLSGPIPAELSNCSALVVLDASANDLSG 327 (350)
Q Consensus 299 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 327 (350)
|++.+..+..|..+++|+.|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 76665555556666667777777666653
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=8.5e-15 Score=117.09 Aligned_cols=132 Identities=20% Similarity=0.176 Sum_probs=67.3
Q ss_pred CCCCCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcC
Q 036666 164 LANLTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINL 243 (350)
Q Consensus 164 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 243 (350)
+.+.++|++|++++|.+.. ++......++|++|++++|. +++. ..++.+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~-------------------------l~~~--~~l~~l~~L 66 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNE-------------------------IRKL--DGFPLLRRL 66 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSC-------------------------CCEE--CCCCCCSSC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCC-------------------------CCcc--cccccCCCC
Confidence 4455666666666666552 23222222255555555554 4432 234455555
Q ss_pred ceEeecccccccCCcccccCCCCCCeEEccCCcCcccCCh--hhhCCCCCCEEeccCccCcccCCc----cCcCCCCCCE
Q 036666 244 QTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPS--ELGKLQKLTSLLLWGNTLSGPIPA----ELSNCSALVV 317 (350)
Q Consensus 244 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~ 317 (350)
+.|++++|.+.+..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+.. .|. .+..+++|+.
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccce
Confidence 55555555554433333355555555555555554 3333 45555666666666666552 233 2455566666
Q ss_pred EEccCCcC
Q 036666 318 LDASANDL 325 (350)
Q Consensus 318 L~l~~n~l 325 (350)
|++++|..
T Consensus 145 Ld~~~n~~ 152 (176)
T 1a9n_A 145 LDFQKVKL 152 (176)
T ss_dssp ETTEECCH
T ss_pred eCCCcCCH
Confidence 66666544
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=6e-14 Score=111.79 Aligned_cols=104 Identities=24% Similarity=0.244 Sum_probs=67.4
Q ss_pred CeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCc
Q 036666 220 TTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGN 299 (350)
Q Consensus 220 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 299 (350)
+.++++++.++ .+|..+. +.|+.|++++|.+.+..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677777665 3344333 56777777777776666666666777777777777776544445566677777777777
Q ss_pred cCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 300 TLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 300 ~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
++.+..+..+..+++|+.|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 776555545666677777777777665
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=2.8e-13 Score=107.87 Aligned_cols=104 Identities=26% Similarity=0.320 Sum_probs=80.9
Q ss_pred EEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccC
Q 036666 74 ISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNT 153 (350)
Q Consensus 74 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 153 (350)
+.++++++.+ +.+|..+. ++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..|.++++|++|++++
T Consensus 15 ~~l~~~~n~l--~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRL--ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCC--CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 5677888777 56777664 7888888888888877777888888888888888888865555677888888888888
Q ss_pred CCCCCCCCccCCCCCCCCEEEcccCcCC
Q 036666 154 NRLSGSIPPQLANLTSLQVLCLQDNLLN 181 (350)
Q Consensus 154 n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 181 (350)
|++++..+..|..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888655555777788888888877765
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=2e-13 Score=108.30 Aligned_cols=104 Identities=28% Similarity=0.367 Sum_probs=77.2
Q ss_pred EEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccC
Q 036666 74 ISLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNT 153 (350)
Q Consensus 74 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 153 (350)
+.++++++.+ ..+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 12 ~~l~~s~n~l--~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSL--ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCC--SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCc--CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4566666666 45666553 7788888888888877777788888888888888888766666677788888888888
Q ss_pred CCCCCCCCccCCCCCCCCEEEcccCcCC
Q 036666 154 NRLSGSIPPQLANLTSLQVLCLQDNLLN 181 (350)
Q Consensus 154 n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 181 (350)
|++++..+..|..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8877665556777777777777777665
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=4.6e-16 Score=127.01 Aligned_cols=132 Identities=26% Similarity=0.266 Sum_probs=113.3
Q ss_pred hcCCCCcCeeecccccCcCCCCc------cccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhh
Q 036666 213 LGMLTNLTTFGAAATGLSGVIPP------TFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELG 286 (350)
Q Consensus 213 l~~~~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 286 (350)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45566778888888888777665 88999999999999999976 55 7888999999999999999 6788888
Q ss_pred CCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEeCcCCCC
Q 036666 287 KLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELP-GDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 287 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l 349 (350)
.+++|++|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 88999999999999986 44 57788999999999999985433 4788999999999999976
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=5.4e-12 Score=114.02 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=59.4
Q ss_pred cccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 036666 260 EIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLL 339 (350)
Q Consensus 260 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 339 (350)
.|..+.+|+.+.+..+ ++......|.++.+|+.++|..+ ++.....+|.++.+|+.+++..+ ++.....+|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4556677777777544 44344556778888888888644 55566677888888888888766 665666788888888
Q ss_pred CEEeCcC
Q 036666 340 EQLHLSD 346 (350)
Q Consensus 340 ~~L~l~~ 346 (350)
+.+++..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 8888754
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=1e-14 Score=130.39 Aligned_cols=182 Identities=17% Similarity=0.151 Sum_probs=118.9
Q ss_pred CCCCCEEEcccCcCCCCCCcc----CC-CCCCCCEEeccCCCCCcccC-ChhhcCCCCcCeeecccccCcCCCCccc---
Q 036666 167 LTSLQVLCLQDNLLNGSIPSQ----LG-SLVSLQQFRIGGNPYLTGEI-PTQLGMLTNLTTFGAAATGLSGVIPPTF--- 237 (350)
Q Consensus 167 l~~L~~L~l~~n~~~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l--- 237 (350)
+++|+.|++++|.++...... +. ..++|++|++++|. +.... ......+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 367889999999876432222 22 23689999999988 44332 2233445688899999998875433333
Q ss_pred --cCCCcCceEeecccccccC----CcccccCCCCCCeEEccCCcCccc----CChhhhCCCCCCEEeccCccCccc---
Q 036666 238 --GNLINLQTLALYDTEVFGS----IPPEIGLCSELRNLYLHMNKLTGS----IPSELGKLQKLTSLLLWGNTLSGP--- 304 (350)
Q Consensus 238 --~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~--- 304 (350)
...+.|++|++++|.+... ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3467889999998887542 233446678889999999888743 244566778899999999888753
Q ss_pred -CCccCcCCCCCCEEEccCCcCcccCCccccCC---CC--CCEEe--CcCCCC
Q 036666 305 -IPAELSNCSALVVLDASANDLSGELPGDLGKL---VL--LEQLH--LSDNML 349 (350)
Q Consensus 305 -~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~--L~~L~--l~~n~l 349 (350)
+...+..+++|+.|+|++|.+++.....+..+ .. |+.+. +.+|.+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 33445567888999999998876554444332 21 66666 555543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=3.9e-15 Score=133.18 Aligned_cols=183 Identities=18% Similarity=0.140 Sum_probs=123.3
Q ss_pred CCCCCEEEccCCCCCCCCCcc----CC-CCCCCCEEEcccCcCCCCCCcc-CCCCCCCCEEeccCCCCCcccCChhh---
Q 036666 143 LSLLQFLFLNTNRLSGSIPPQ----LA-NLTSLQVLCLQDNLLNGSIPSQ-LGSLVSLQQFRIGGNPYLTGEIPTQL--- 213 (350)
Q Consensus 143 l~~L~~L~L~~n~~~~~~~~~----l~-~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~l--- 213 (350)
++.|++|++++|.++...... +. ..++|++|++++|.++...... ...+++|++|++++|. +.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 467999999999987432222 22 2368999999999876432222 2235678999999998 554433333
Q ss_pred --cCCCCcCeeecccccCcCC----CCccccCCCcCceEeecccccccCC----cccccCCCCCCeEEccCCcCccc---
Q 036666 214 --GMLTNLTTFGAAATGLSGV----IPPTFGNLINLQTLALYDTEVFGSI----PPEIGLCSELRNLYLHMNKLTGS--- 280 (350)
Q Consensus 214 --~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~--- 280 (350)
...++|++|++++|.++.. ++..+...+.|++|++++|.+.... +..+...++|++|++++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3568899999999988753 3445577889999999999886432 44566778999999999999753
Q ss_pred -CChhhhCCCCCCEEeccCccCcccCCccCcCC---C--CCCEEE--ccCCcCc
Q 036666 281 -IPSELGKLQKLTSLLLWGNTLSGPIPAELSNC---S--ALVVLD--ASANDLS 326 (350)
Q Consensus 281 -~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~--~L~~L~--l~~n~l~ 326 (350)
+...+...++|++|++++|.+++.....+... . .++.+. +..+.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 33445567899999999999986544443322 1 156665 5555554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=5.7e-12 Score=111.85 Aligned_cols=108 Identities=24% Similarity=0.282 Sum_probs=91.9
Q ss_pred CCCcCceeeCCCCCEEEEEcCCC-CCCCCCCCccCCCCCCCCEEECCC-CcCCcCCCcCCCCCCCCCeEeCCCCCCCCCC
Q 036666 59 PCSWQGITCSPQNRVISLSLPDT-FLNLSALPPQLSSLSSLQLLNLSS-TNISGIIPPSFGQLTHLRLLDLSSNSLSGPI 136 (350)
Q Consensus 59 ~c~~~~~~c~~~~~v~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 136 (350)
.|.|..+.|. ++ .+ ..+|. +..+.+|++|+|++ |.+.+..+..|..+++|++|+|++|.+.+..
T Consensus 7 ~C~~~~v~~~-----------~~n~l--~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 7 PHGSSGLRCT-----------RDGAL--DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSSSSCEECC-----------SSCCC--TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred cccCCEEEcC-----------CCCCC--CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence 3666666664 33 33 56888 99999999999996 9999888888999999999999999999888
Q ss_pred CcccCCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEcccCcCC
Q 036666 137 PEELGQLSLLQFLFLNTNRLSGSIPPQLANLTSLQVLCLQDNLLN 181 (350)
Q Consensus 137 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 181 (350)
|..|.++++|++|+|++|++++..+..+..++ |+.|++.+|.+.
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 88999999999999999999976666666655 999999999876
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=1.2e-10 Score=105.16 Aligned_cols=247 Identities=13% Similarity=0.157 Sum_probs=124.4
Q ss_pred cCCCCCCCCEEECCCC---cCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCCC
Q 036666 91 QLSSLSSLQLLNLSST---NISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLANL 167 (350)
Q Consensus 91 ~~~~~~~L~~L~l~~n---~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 167 (350)
+|.++.+|+.+.+..+ .++..-..+|.++.+|+.+.+..+ +..+...+|..+.+|+.+.+..+ +.......|..+
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c 159 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC 159 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence 4666677777766554 244344455666666666666543 23233445666666666666533 222333445556
Q ss_pred CCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccc--------------------
Q 036666 168 TSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAAT-------------------- 227 (350)
Q Consensus 168 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~-------------------- 227 (350)
.+|+.+.+..+ +.......|. ..+|+.+.+..+ ........+..+.+++.......
T Consensus 160 ~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T 4gt6_A 160 YSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL 235 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE
T ss_pred cccccccccce-eeEecccccc-ccceeEEEECCc--ccccccchhhhccccceecccccccccccceeecccccccccc
Confidence 66666666443 1212222222 234555544332 11112222333333332222111
Q ss_pred ----------------cCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCC
Q 036666 228 ----------------GLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKL 291 (350)
Q Consensus 228 ----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 291 (350)
.++..-..+|.++..|+.+.+..+.. ......|.++++|+.+.+. +.++......|.++.+|
T Consensus 236 ~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L 313 (394)
T 4gt6_A 236 IRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISL 313 (394)
T ss_dssp EECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTC
T ss_pred cccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCc
Confidence 01111123455566666666654322 2333455666666666664 33333444566667777
Q ss_pred CEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCC
Q 036666 292 TSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDN 347 (350)
Q Consensus 292 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 347 (350)
+.+.|..+ ++.....+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++.++
T Consensus 314 ~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 314 KSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 77777543 44455556666777777777543 44344556777777777776654
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=6e-11 Score=107.16 Aligned_cols=164 Identities=13% Similarity=0.065 Sum_probs=111.8
Q ss_pred CCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEe
Q 036666 168 TSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLA 247 (350)
Q Consensus 168 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 247 (350)
.+|+.+.+... ........+..+..++.+.+..+ ........+..+..++.+......+. ...+..+.+|+.+.
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVK 303 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeec---cccccccccccccc
Confidence 44455544332 12122334556666666666554 22333445666666666666554332 34577888999999
Q ss_pred ecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcc
Q 036666 248 LYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSG 327 (350)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 327 (350)
+..+ +......+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ +......+|.++++|+.+++..+ +.
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~- 378 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE- 378 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-
Confidence 8765 44555667899999999999754 55455678999999999999877 66677889999999999999866 22
Q ss_pred cCCccccCCCCCCEE
Q 036666 328 ELPGDLGKLVLLEQL 342 (350)
Q Consensus 328 ~~~~~~~~l~~L~~L 342 (350)
.+..+|.++++|+.+
T Consensus 379 ~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGGBCTTCEEEEE
T ss_pred EhhheecCCCCCcEE
Confidence 334678899988875
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=8.7e-12 Score=110.66 Aligned_cols=103 Identities=21% Similarity=0.130 Sum_probs=78.7
Q ss_pred eeecccc-cCcCCCCccccCCCcCceEeecc-cccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEEeccC
Q 036666 221 TFGAAAT-GLSGVIPPTFGNLINLQTLALYD-TEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWG 298 (350)
Q Consensus 221 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 298 (350)
.++++++ ++++ +|. ++.+++|+.|+|++ |.+.+..+..|..+++|+.|++++|++++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567776 6664 565 88888888888885 888777777788888888888888888877777788888888888888
Q ss_pred ccCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 299 NTLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 299 n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
|++.+..+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 888866555555554 888888888776
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.19 E-value=2.1e-09 Score=97.03 Aligned_cols=247 Identities=12% Similarity=0.122 Sum_probs=170.8
Q ss_pred cCCCCC-CCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCC---CCCCCCcccCCCCCCCEEEccCCCCCCCCCccCCC
Q 036666 91 QLSSLS-SLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNS---LSGPIPEELGQLSLLQFLFLNTNRLSGSIPPQLAN 166 (350)
Q Consensus 91 ~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~---~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 166 (350)
+|.++. .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. +..+...+|.++.+|+.+.+..+ ++......|..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 455664 5888888654 665667889999999999997753 55455668889999998887654 44344567888
Q ss_pred CCCCCEEEcccCcCCCCCCccCCCCCCCCEEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceE
Q 036666 167 LTSLQVLCLQDNLLNGSIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTL 246 (350)
Q Consensus 167 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 246 (350)
+.+|+.+.+..+. .......+..+.+|+.+.+..+ ........+. ..+|+.+.+..+-. ......+..+..+...
T Consensus 136 c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 136 CEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTI 210 (394)
T ss_dssp CTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEE
T ss_pred hccccccccccee-eeecccceecccccccccccce--eeEecccccc-ccceeEEEECCccc-ccccchhhhcccccee
Confidence 9999999997543 3355667888999999998765 3333333443 45788888765422 1223344445444444
Q ss_pred eecccc------------------------------------cccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCC
Q 036666 247 ALYDTE------------------------------------VFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQK 290 (350)
Q Consensus 247 ~l~~~~------------------------------------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 290 (350)
...... +.......|.++..|+.+.+..+... .....+.++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~ 289 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPA 289 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccc
Confidence 332211 11122245677888898888765443 45567888999
Q ss_pred CCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCcCC
Q 036666 291 LTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLSDN 347 (350)
Q Consensus 291 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 347 (350)
|+.+.+. +.+......+|.++.+|+.++|..+ ++.....+|.+|.+|+.+.+..+
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 9999996 4566567778999999999999765 66566778999999999998654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=1e-11 Score=110.19 Aligned_cols=180 Identities=18% Similarity=0.193 Sum_probs=90.5
Q ss_pred CCCCeEeCCCCCCCC-CC-------CcccCCCCCCCEEEccCCCCC---------CCCCccCCCCCCCCEEEcccCcCCC
Q 036666 120 THLRLLDLSSNSLSG-PI-------PEELGQLSLLQFLFLNTNRLS---------GSIPPQLANLTSLQVLCLQDNLLNG 182 (350)
Q Consensus 120 ~~L~~L~L~~~~~~~-~~-------~~~~~~l~~L~~L~L~~n~~~---------~~~~~~l~~l~~L~~L~l~~n~~~~ 182 (350)
..++.|.+......+ .. ..++..+++|+.|.+.+.... +.+...+..+|+|+.|++++|...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456777777655432 11 123456789999988764332 112233456788888888776311
Q ss_pred CCCccCCCCCCCCEEeccCCCCCcccCChhhc--CCCCcCeeeccc--ccCcCC-----CCccc--cCCCcCceEeeccc
Q 036666 183 SIPSQLGSLVSLQQFRIGGNPYLTGEIPTQLG--MLTNLTTFGAAA--TGLSGV-----IPPTF--GNLINLQTLALYDT 251 (350)
Q Consensus 183 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~--~~~~L~~L~l~~--~~~~~~-----~~~~l--~~~~~L~~L~l~~~ 251 (350)
.++. + .+++|++|++..+. +.......+. .+++|+.|+++. +...+. +...+ ..+++|+.|++.+|
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2222 2 26778888877666 3333333332 567777777642 111111 11111 13455666666555
Q ss_pred ccccCCcccc---cCCCCCCeEEccCCcCccc----CChhhhCCCCCCEEeccCccCcc
Q 036666 252 EVFGSIPPEI---GLCSELRNLYLHMNKLTGS----IPSELGKLQKLTSLLLWGNTLSG 303 (350)
Q Consensus 252 ~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~ 303 (350)
.+....+..+ ..+++|++|+++.|.+++. ++..+..+++|+.|++++|.+++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 5432221111 1345555555555555432 12222334555555555555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=1.7e-08 Score=90.48 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=60.4
Q ss_pred CCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCCcCcccCChhhhCCCCCCEE
Q 036666 215 MLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNKLTGSIPSELGKLQKLTSL 294 (350)
Q Consensus 215 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 294 (350)
.+.+++.+.+..+ +.......+..+..|+.+.+..+ +.......|.++.+|+.+.+..+ +.......|.++.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3444444444332 22222334445555555555443 22233334555555555555432 222333445555556666
Q ss_pred eccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeCc
Q 036666 295 LLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLEQLHLS 345 (350)
Q Consensus 295 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 345 (350)
.+.++.+......+|.++.+|+.+.|..+ ++.....+|.+|.+|+.+.+.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 55555555444555555555665555433 333334455555555555553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=7.2e-11 Score=104.76 Aligned_cols=199 Identities=18% Similarity=0.191 Sum_probs=113.9
Q ss_pred CCCCEEEccCCCCCC-CC-------CccCCCCCCCCEEEcccCcCC---------CCCCccCCCCCCCCEEeccCCCCCc
Q 036666 144 SLLQFLFLNTNRLSG-SI-------PPQLANLTSLQVLCLQDNLLN---------GSIPSQLGSLVSLQQFRIGGNPYLT 206 (350)
Q Consensus 144 ~~L~~L~L~~n~~~~-~~-------~~~l~~l~~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~l~~n~~~~ 206 (350)
.+++.|.+....+.+ .. ..+...+++|+.|.+...... +.+...+..+|+|+.|.++++...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457788877655442 11 122345689999988764321 112233456678888888776211
Q ss_pred ccCChhhcCCCCcCeeecccccCcCCCCcccc--CCCcCceEeeccc--ccccC-----Ccccc--cCCCCCCeEEccCC
Q 036666 207 GEIPTQLGMLTNLTTFGAAATGLSGVIPPTFG--NLINLQTLALYDT--EVFGS-----IPPEI--GLCSELRNLYLHMN 275 (350)
Q Consensus 207 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~n 275 (350)
.++. + ..++|+.|++..+.++......+. .+++|++|+|+.+ ...+. +...+ ..+++|++|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2222 2 367888888887776543333333 6778888887531 11111 11122 24678888888887
Q ss_pred cCcccCChhhh---CCCCCCEEeccCccCccc----CCccCcCCCCCCEEEccCCcCcccCCccccC-CCCCCEEeCcCC
Q 036666 276 KLTGSIPSELG---KLQKLTSLLLWGNTLSGP----IPAELSNCSALVVLDASANDLSGELPGDLGK-LVLLEQLHLSDN 347 (350)
Q Consensus 276 ~l~~~~~~~~~---~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n 347 (350)
.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+++.....+.. + ...++++++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 77643322222 467788888888877653 2223345677888888888776544333332 2 345666654
Q ss_pred C
Q 036666 348 M 348 (350)
Q Consensus 348 ~ 348 (350)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 3
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=3.4e-07 Score=81.96 Aligned_cols=254 Identities=12% Similarity=0.070 Sum_probs=156.1
Q ss_pred CEEEEEcCCCCCCCCCCCc-cCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEE
Q 036666 72 RVISLSLPDTFLNLSALPP-QLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLF 150 (350)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 150 (350)
.++++++..+ + ..+.. +|.++ .|+.+.+..+ +...-..+|... +|+.+.+..+-.. .....|.++ .++...
T Consensus 70 ~L~~I~lp~~-v--~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~ 141 (379)
T 4h09_A 70 NMTKVTVAST-V--TSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGATTE-IGNYIFYNS-SVKRIV 141 (379)
T ss_dssp TCCEEEECTT-C--CEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTCCE-ECTTTTTTC-CCCEEE
T ss_pred CCCEEEeCCc-c--eEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcccc-ccccccccc-eeeeee
Confidence 5666666543 2 23332 45554 5666666433 333344455554 6888887654221 223334333 344444
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEcccCcC-----------------------------------CCCCCccCCCCCCCC
Q 036666 151 LNTNRLSGSIPPQLANLTSLQVLCLQDNLL-----------------------------------NGSIPSQLGSLVSLQ 195 (350)
Q Consensus 151 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~-----------------------------------~~~~~~~~~~l~~L~ 195 (350)
+..+ ++......|....+++.+.+..+.. .......+....+++
T Consensus 142 ~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~ 220 (379)
T 4h09_A 142 IPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLK 220 (379)
T ss_dssp ECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCS
T ss_pred ccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccc
Confidence 4322 2212223344444444444332111 112223455566777
Q ss_pred EEeccCCCCCcccCChhhcCCCCcCeeecccccCcCCCCccccCCCcCceEeecccccccCCcccccCCCCCCeEEccCC
Q 036666 196 QFRIGGNPYLTGEIPTQLGMLTNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMN 275 (350)
Q Consensus 196 ~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 275 (350)
.+.+..+ ........+..+.+|+.+.+..+ ++......+.++..|+.+.+..+ +.......|.++.+|+.+.+.++
T Consensus 221 ~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~ 296 (379)
T 4h09_A 221 KITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS 296 (379)
T ss_dssp EEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT
T ss_pred eeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc
Confidence 7777554 34444566788899999998765 55555667888999999998654 44444567889999999999988
Q ss_pred cCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 036666 276 KLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLSGELPGDLGKLVLLE 340 (350)
Q Consensus 276 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 340 (350)
.++......|.++.+|+.+.|..+ ++.....+|.++.+|+.+.+..+ ++.....+|.++..++
T Consensus 297 ~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 297 AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 887666778999999999999754 66567778999999999998765 5545566777765443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=1.3e-09 Score=87.46 Aligned_cols=43 Identities=5% Similarity=-0.004 Sum_probs=21.0
Q ss_pred hhhcCCCCcCeeecccc-cCcCC----CCccccCCCcCceEeeccccc
Q 036666 211 TQLGMLTNLTTFGAAAT-GLSGV----IPPTFGNLINLQTLALYDTEV 253 (350)
Q Consensus 211 ~~l~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~ 253 (350)
..+...+.|++|++++| .+... +...+...+.|++|++++|.+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i 77 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS 77 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 34455566666666665 55432 222333344455555555444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=9.8e-09 Score=82.27 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=56.2
Q ss_pred cccCCCcCceEeeccc-ccccC----CcccccCCCCCCeEEccCCcCccc----CChhhhCCCCCCEEeccCccCccc--
Q 036666 236 TFGNLINLQTLALYDT-EVFGS----IPPEIGLCSELRNLYLHMNKLTGS----IPSELGKLQKLTSLLLWGNTLSGP-- 304 (350)
Q Consensus 236 ~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~-- 304 (350)
.+...+.|++|++++| .+... +...+...++|++|++++|.+.+. +...+...++|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555666666555 44321 122334445566666666655432 122333445566666666655532
Q ss_pred --CCccCcCCCCCCEEEc--cCCcCccc----CCccccCCCCCCEEeCcCCCC
Q 036666 305 --IPAELSNCSALVVLDA--SANDLSGE----LPGDLGKLVLLEQLHLSDNML 349 (350)
Q Consensus 305 --~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 349 (350)
+...+...++|+.|++ ++|.+++. +...+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334444555666666 55555533 223333445566666666543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=1e-08 Score=86.41 Aligned_cols=81 Identities=27% Similarity=0.208 Sum_probs=60.7
Q ss_pred cCCCCCCeEEccCCcCcc--cCChhhhCCCCCCEEeccCccCcccCCccCcCCC--CCCEEEccCCcCcccCCc------
Q 036666 262 GLCSELRNLYLHMNKLTG--SIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCS--ALVVLDASANDLSGELPG------ 331 (350)
Q Consensus 262 ~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~------ 331 (350)
.++++|+.|++++|.+++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|+.|++++|.+.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457888899999998886 4456677889999999999988864 2233333 899999999998876652
Q ss_pred -cccCCCCCCEEeC
Q 036666 332 -DLGKLVLLEQLHL 344 (350)
Q Consensus 332 -~~~~l~~L~~L~l 344 (350)
.+..+|+|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 3567888888763
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=3.7e-08 Score=77.19 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=64.4
Q ss_pred CCcCceEeecccccccCCcccccCCCCCCeEEccCCc-CcccCChhhhCC----CCCCEEeccCcc-CcccCCccCcCCC
Q 036666 240 LINLQTLALYDTEVFGSIPPEIGLCSELRNLYLHMNK-LTGSIPSELGKL----QKLTSLLLWGNT-LSGPIPAELSNCS 313 (350)
Q Consensus 240 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~~~ 313 (350)
-.+|++|++++|.++..--..+..+++|++|++++|. +++..-..+..+ ++|++|++++|. +++..-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3468899999888766555567788889999998885 665444455553 478899998874 7765555667788
Q ss_pred CCCEEEccCCc-Ccc
Q 036666 314 ALVVLDASAND-LSG 327 (350)
Q Consensus 314 ~L~~L~l~~n~-l~~ 327 (350)
+|+.|++++|. +++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 88999988884 553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=9.1e-08 Score=80.63 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=61.4
Q ss_pred CCCCe--EEccCCcCc---ccCChhhhCCCCCCEEeccCccCcc--cCCccCcCCCCCCEEEccCCcCcccCCccccCCC
Q 036666 265 SELRN--LYLHMNKLT---GSIPSELGKLQKLTSLLLWGNTLSG--PIPAELSNCSALVVLDASANDLSGELPGDLGKLV 337 (350)
Q Consensus 265 ~~L~~--L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 337 (350)
+.|+. ++++.|... ..++.....+++|+.|+|++|++.+ .++..+..+++|+.|+|++|.+.+. ..+..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~ 218 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK 218 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence 44444 556666433 1222233578999999999999997 4566677899999999999999865 2344444
Q ss_pred --CCCEEeCcCCCCC
Q 036666 338 --LLEQLHLSDNMLT 350 (350)
Q Consensus 338 --~L~~L~l~~n~l~ 350 (350)
+|++|++++|+++
T Consensus 219 ~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 219 GLKLEELWLDGNSLC 233 (267)
T ss_dssp TSCCSEEECTTSTTG
T ss_pred cCCcceEEccCCcCc
Confidence 9999999999974
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=3e-07 Score=72.03 Aligned_cols=84 Identities=10% Similarity=0.068 Sum_probs=52.1
Q ss_pred CCcCeeecccccCcCCCCccccCCCcCceEeecccc-cccCCcccccCC----CCCCeEEccCCc-CcccCChhhhCCCC
Q 036666 217 TNLTTFGAAATGLSGVIPPTFGNLINLQTLALYDTE-VFGSIPPEIGLC----SELRNLYLHMNK-LTGSIPSELGKLQK 290 (350)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~~~~~~~~~ 290 (350)
.+|++|++++|.++..-...+..+++|++|++++|. ++..--..+... ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777666555566677777777777774 332222233332 357777777764 66544445566777
Q ss_pred CCEEeccCcc
Q 036666 291 LTSLLLWGNT 300 (350)
Q Consensus 291 L~~L~l~~n~ 300 (350)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=1.2e-05 Score=64.15 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=18.6
Q ss_pred hcCCCCcCeeecccc-cCcCC----CCccccCCCcCceEeeccccc
Q 036666 213 LGMLTNLTTFGAAAT-GLSGV----IPPTFGNLINLQTLALYDTEV 253 (350)
Q Consensus 213 l~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~ 253 (350)
+..-+.|++|+++++ .+... +.+.+..-+.|+.|+|++|.+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 344455666666553 44321 222333344455555555444
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00049 Score=51.11 Aligned_cols=56 Identities=29% Similarity=0.275 Sum_probs=36.9
Q ss_pred eEEccCCcCc-ccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCCcCc
Q 036666 269 NLYLHMNKLT-GSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASANDLS 326 (350)
Q Consensus 269 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 326 (350)
.++.++++++ ..+|..+ .++|++|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 2344322 246777888888777666666777777777777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.29 E-value=0.00011 Score=58.53 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=85.2
Q ss_pred ccccCCCcCceEeeccc-ccccC----CcccccCCCCCCeEEccCCcCccc----CChhhhCCCCCCEEeccCccCccc-
Q 036666 235 PTFGNLINLQTLALYDT-EVFGS----IPPEIGLCSELRNLYLHMNKLTGS----IPSELGKLQKLTSLLLWGNTLSGP- 304 (350)
Q Consensus 235 ~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~- 304 (350)
..+.+-+.|++|+++++ .+... +.+.+..-..|+.|++++|++.+. +...+...+.|++|+|++|.|.+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34456788999999986 65322 334566778999999999999853 334555678999999999999863
Q ss_pred ---CCccCcCCCCCCEEEccCC---cCccc----CCccccCCCCCCEEeCcCCC
Q 036666 305 ---IPAELSNCSALVVLDASAN---DLSGE----LPGDLGKLVLLEQLHLSDNM 348 (350)
Q Consensus 305 ---~~~~~~~~~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~l~~n~ 348 (350)
+.+.+.....|+.|+|++| .+... +...+...++|+.|+++.|.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4456677788999999876 34432 44556677999999998875
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.06 E-value=0.0018 Score=48.03 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=39.0
Q ss_pred EEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcCCcCCCcCCCCCCCCCeEeCCCCCCC
Q 036666 75 SLSLPDTFLNLSALPPQLSSLSSLQLLNLSSTNISGIIPPSFGQLTHLRLLDLSSNSLS 133 (350)
Q Consensus 75 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~~~~~ 133 (350)
.++.++.++....+|..+. +++++|+|++|.++...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666663236776554 46788888888887666666777777777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.33 E-value=6.9 Score=26.85 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=27.4
Q ss_pred cCCcCCCcCCCCCCCCCeEeCCCCCCCCCCCcccCCCCCCCEEEccC
Q 036666 107 NISGIIPPSFGQLTHLRLLDLSSNSLSGPIPEELGQLSLLQFLFLNT 153 (350)
Q Consensus 107 ~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 153 (350)
.++..-...|.++..|+.+.|..+ +..+...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444556666777777777654 3324445666677777666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.05 E-value=4.4 Score=27.90 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=36.0
Q ss_pred cCcccCChhhhCCCCCCEEeccCccCcccCCccCcCCCCCCEEEccCC
Q 036666 276 KLTGSIPSELGKLQKLTSLLLWGNTLSGPIPAELSNCSALVVLDASAN 323 (350)
Q Consensus 276 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 323 (350)
.++..-...|.+|.+|+.+.|..+ ++.....+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444567889999999999775 44467778999999999988764
Done!