BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036667
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 79/89 (88%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQV 60
MPK+YIYEPWTAPL++QT+A CI+G+DYP P+V HDSASKECKRK+GEAYALN+K++G+V
Sbjct: 467 MPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKKMDGKV 526
Query: 61 SEDDLKNLRRKFEGEENQESGRRQKQKRL 89
E++L++LRRK + +E++ES R ++ +L
Sbjct: 527 DEENLRDLRRKLQKDEHEESKIRNQRPKL 555
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQV 60
MPKEYIYEPWTAPL+IQ +A CIIG+DYP PVV H ASKECK+ +GEAYA N+ + +
Sbjct: 459 MPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDHAIASKECKKMMGEAYASNRLDDDKP 518
Query: 61 SEDDLKNLRRKFEGEENQESGRRQKQKRL 89
+ N R+ +Q + K K+L
Sbjct: 519 DKGKSSNSSRRKLSAGSQVTPNSSKTKQL 547
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P YIYEPW AP +IQ AKCIIG DYP P+V+H S+ ++ + Y
Sbjct: 458 FPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIY 507
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P YIYEPW AP ++Q AKCIIG DYP P+V+H S+ ++ + Y
Sbjct: 457 FPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIY 506
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P YIYEPW AP ++Q AKCIIG DYP P+V+H S+ ++ + Y
Sbjct: 448 FPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIY 497
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P +YIY+PW AP +IQ AKCIIG +YP P+V+H AS+ ++ + Y
Sbjct: 439 FPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIY 488
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P +YIY+PW AP +IQ AKCIIG +YP P+V+H AS+ ++ + Y
Sbjct: 439 FPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIY 488
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P YIYEPW AP ++Q A CIIG DYP P+V+H S+ ++ + Y
Sbjct: 457 FPSRYIYEPWNAPESVQKAANCIIGVDYPRPIVNHAETSRLNIERMKQIY 506
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P +YIY+PW AP ++Q AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 439 FPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVNHAEASRLNIERMKQIY 488
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 439 FPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIY 488
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 439 FPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIY 488
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 439 FPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIY 488
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 439 FPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIY 488
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 50
P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 439 FPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIY 488
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 40
+P Y++EPW APL +Q CI+GRDYPAP++ +AS+
Sbjct: 460 LPTLYVHEPWKAPLDVQKECGCIVGRDYPAPMIDLAAASR 499
>sp|B0WRR9|CRY1_CULQU Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1
Length = 499
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 2 PKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 59
P Y++EPW AP +Q + C+IG+DYPAP+V+ +K K+ A+ QKL Q
Sbjct: 415 PALYVHEPWKAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNANKMN---AIRQKLLDQ 469
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQV 60
+P ++I+ PW AP ++ A +G +YP P+V D A L + + L +
Sbjct: 443 LPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEAASRAAI 502
Query: 61 SEDDLKNLRRKFEGEE 76
+ L E EE
Sbjct: 503 ENGSEEGLGDSAEVEE 518
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 56
+PKEYI+EPW Q + +C+IG YP ++ SK KR + AL L
Sbjct: 464 LPKEYIHEPWRLSAEQQVKFECLIGVHYPERII---DLSKAVKRNMMAMTALRNSL 516
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 38
+P E+I+ PW APLT+ + +G +Y P+V D+A
Sbjct: 440 LPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTA 477
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 38
+P E+I+ PW APLT+ + +G +Y P+V D+A
Sbjct: 439 LPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVIDTA 476
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 46
+P YI+EPW Q + KC + DYP P+V H SK+ K+ L
Sbjct: 428 VPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDH---SKQRKKAL 470
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 2 PKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 40
P ++++EPW A Q C+IG YPAP+V SK
Sbjct: 462 PAQFVHEPWKASREQQIEYGCVIGEKYPAPMVDLAIVSK 500
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 40
+PKE+++EPW Q + +C+IG YP ++ A K
Sbjct: 464 VPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVK 503
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 1 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 46
+P + I++PW T Q + +G DYP P V+ S E +RK+
Sbjct: 438 LPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQ-SVEARRKI 482
>sp|Q2QCI8|MED12_DANRE Mediator of RNA polymerase II transcription subunit 12 OS=Danio
rerio GN=med12 PE=2 SV=1
Length = 2173
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 31 PVVSHDSASKECKRKLGEAYALNQKLN------GQVSEDDLKNLRRKFEGEENQESGRRQ 84
P+ +SAS EC ++L Y + ++ + ++++D LK L RK E E G+++
Sbjct: 738 PIPQEESASHECNQRLVVLYGVGKQRDEARHAIKKITKDILKVLNRKSTAETGGEEGQKR 797
Query: 85 KQKR 88
K+ +
Sbjct: 798 KRSK 801
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 6 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKE 41
I+EPW Q +G++YP P+V ++KE
Sbjct: 440 IHEPWKMSPERQQEVGATLGKEYPHPIVDLFDSAKE 475
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,107,225
Number of Sequences: 539616
Number of extensions: 1344039
Number of successful extensions: 3891
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3862
Number of HSP's gapped (non-prelim): 36
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)