BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036672
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AGS|A Chain A, Leishmania Tdr1 - A Unique Trimeric Glutathione
Transferase
pdb|4AGS|B Chain B, Leishmania Tdr1 - A Unique Trimeric Glutathione
Transferase
pdb|4AGS|C Chain C, Leishmania Tdr1 - A Unique Trimeric Glutathione
Transferase
Length = 471
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 63/177 (35%), Gaps = 42/177 (23%)
Query: 2 CPYAQRVWIT-RNCKEKIKLVPIDL-QNRPDWYKMKVYLANKMPSLEHNNEDPNKREFAE 59
CP+ RV I R + V + L + P WYK ++ +P+LE N D + F
Sbjct: 35 CPFCHRVEIVAREKQVSYDRVAVGLREEXPQWYK-QINPRETVPTLEVGNAD-KRFXFES 92
Query: 60 ELFS-YTDTFNKTARSSLEGDGNEARVAFHYFETPLSKF--------------------- 97
L + Y D A +L G R +F + F
Sbjct: 93 XLIAQYLDNSGAPA-GALXGSSAAQRHQIEFFLAQVGDFIGAAHGLLRDPLSGEKRKAXD 151
Query: 98 --------------NDGPF-LQGQFSLADIAYAPFIERCKPFLLEAKKYDITAGRPQ 139
GP+ G+F+ AD+A PF+ R KP L YD+ P+
Sbjct: 152 DNAAYVDGLLAANQTTGPYYCDGEFTXADVALVPFLVRLKPALXYYAGYDVFCKAPR 208
>pdb|3QAG|A Chain A, Human Glutathione Transferase O2 With Glutathione -New
Crystal Form
pdb|3Q18|A Chain A, Human Glutathione Transferase O2
pdb|3Q18|B Chain B, Human Glutathione Transferase O2
pdb|3Q19|A Chain A, Human Glutathione Transferase O2
pdb|3Q19|B Chain B, Human Glutathione Transferase O2
Length = 239
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 66/181 (36%), Gaps = 38/181 (20%)
Query: 2 CPYAQRVWITRNCKE-KIKLVPIDLQNRPDWYKMKV------------------------ 36
CPY+ R + K+ + ++V I+L+N+P+WY K
Sbjct: 32 CPYSHRTRLVLKAKDIRHEVVNINLRNKPEWYYTKHPFGHIPVLETSQSQLIYESVIACE 91
Query: 37 YLANKMPSLEHNNEDPNKR---EFAEELFSYTDTFNK----TARSSLEGDGNEA--RVAF 87
YL + P + DP +R + ELFS K RS E +A R F
Sbjct: 92 YLDDAYPGRKLFPYDPYERARQKMLLELFSKVPHLTKECLVALRSGRESTNLKAALRQEF 151
Query: 88 HYFETPLSKFNDGPFLQGQFSLADIAYAPFIERCKPFLLEAKKYDITAGRPQLATWIEEM 147
E L N F S+ D P+ ER + + D + P L WI M
Sbjct: 152 SNLEEILEYQNTTFFGGTSISMIDYLLWPWFERLDVYGI----LDCVSHTPALRLWISAM 207
Query: 148 K 148
K
Sbjct: 208 K 208
>pdb|1LJR|A Chain A, Glutathione Transferase (Hgst T2-2) From Human
pdb|1LJR|B Chain B, Glutathione Transferase (Hgst T2-2) From Human
pdb|2LJR|A Chain A, Glutathione Transferase Apo-Form From Human
pdb|2LJR|B Chain B, Glutathione Transferase Apo-Form From Human
pdb|3LJR|A Chain A, Glutathione Transferase (Theta Class) From Human In
Complex With The Glutathione Conjugate Of 1-Menaphthyl
Sulfate
pdb|3LJR|B Chain B, Glutathione Transferase (Theta Class) From Human In
Complex With The Glutathione Conjugate Of 1-Menaphthyl
Sulfate
Length = 244
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 97 FNDGPFLQGQ-FSLADIAYAPFIERCKPFLLEAKKYDITAGRPQLATW 143
D PFL GQ +LAD+ E +P A Y++ GRP+LA W
Sbjct: 151 LGDRPFLAGQQVTLADLM--ALEELMQPV---ALGYELFEGRPRLAAW 193
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 88 HYFETPLSKFNDGPFLQGQFSLADIAYA----PFIERCKPFLLEAKKYDITAGRPQ 139
HY T ++ P L G+ +IAY P +E +E+ +D +G PQ
Sbjct: 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQ 144
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 88 HYFETPLSKFNDGPFLQGQFSLADIAYA----PFIERCKPFLLEAKKYDITAGRPQ 139
HY T ++ P L G+ +IAY P +E +E+ +D +G PQ
Sbjct: 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQ 144
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 77 EGDGNEARVAFHYFETPLSKFNDGPFLQGQFSLADIAYAPFIERCK 122
+G + A+ A YF + + F G QG F+ + I Y + E+ K
Sbjct: 129 DGKFDTAKEALEYFGSRRTDFEVGDVFQGVFTASQIRYVGYFEKIK 174
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 88 HYFETPLSKFNDGPFLQGQFSLADIAYA----PFIERCKPFLLEAKKYDITAGRPQ 139
HY T ++ P L G+ +IAY P +E +E+ +D +G PQ
Sbjct: 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQ 144
>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens
Length = 241
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 39/183 (21%)
Query: 2 CPYAQRVWITRNCKE-KIKLVPIDLQNRPDWYKMK------------------------V 36
CP+A+R + K + +++ I+L+N+P+W+ K
Sbjct: 32 CPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCE 91
Query: 37 YLANKMPSLEHNNEDPNKR---EFAEELFSYTDTF-----NKTARSSLEGDGNEARVAFH 88
YL P + +DP ++ + ELFS + + G E R F
Sbjct: 92 YLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFT 151
Query: 89 YFETPLSKFNDGPFLQGQFSLADIAYAPFIERCKPFLLEAKKY-DITAGRPQLATWIEEM 147
E L+ F S+ D P+ ER LEA K + P+L W+ M
Sbjct: 152 KLEEVLTNKKTTFFGGNSISMIDYLIWPWFER-----LEAMKLNECVDHTPKLKLWMAAM 206
Query: 148 KNE 150
K +
Sbjct: 207 KED 209
>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1)
From Shewanella Amazonensis Sb2b At 1.70 A Resolution
Length = 444
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 81 NEARVAFHYFETPLSKFNDGPFLQGQFSLADIAYAPFIERCK 122
+EA + HY S F GP Q + +AD A++P I K
Sbjct: 317 HEAELEKHYIAAE-SDFGAGPIYQIDWRVADTAHSPVINAXK 357
>pdb|1N4K|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor Binding Core In Complex With Ip3
Length = 381
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 73 RSSLEGDGNEARVAFHYFETPLSKFNDGPFLQGQFSLADIAYAPFIERCK 122
R L + N + F + P + DGP L+ + L D +APF C+
Sbjct: 283 RQKLMREQNILKQIFKLLQAPFTDCGDGPMLRLE-ELGDQRHAPFRHICR 331
>pdb|3LFL|A Chain A, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|B Chain B, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|C Chain C, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
Length = 240
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 2 CPYAQRVWITRNCKE-KIKLVPIDLQNRPDWY 32
CP+A+R + K + +++ I+L+N+P+W+
Sbjct: 32 CPFAERTRLVLKAKGIRHEVININLKNKPEWF 63
>pdb|3T8S|A Chain A, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
pdb|3T8S|B Chain B, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
Length = 585
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 73 RSSLEGDGNEARVAFHYFETPLSKFNDGPFLQGQFSLADIAYAPFIERCK 122
R L + N + F + P + DGP L+ + L D +APF C+
Sbjct: 489 RQKLMREQNILKQIFKLLQAPFTDCGDGPMLRLE-ELGDQRHAPFRHICR 537
>pdb|3NWR|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Burkholderia Fungorum
Length = 432
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 110 ADIAYAPFIERCKPFLLEAKKYDITAGRPQL 140
A+ A+AP ER + + E ++Y +GRP +
Sbjct: 201 ANPAHAPLAERVRAVMSEVRRYRERSGRPVM 231
>pdb|1QO5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|E Chain E, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|F Chain F, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|G Chain G, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|H Chain H, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|I Chain I, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|J Chain J, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|K Chain K, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|L Chain L, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|M Chain M, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|N Chain N, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|O Chain O, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|P Chain P, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|Q Chain Q, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
pdb|1QO5|R Chain R, Fructose 1,6-Bisphosphate Aldolase From Human Liver
Tissue
Length = 363
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 38 LANKMPSLEHNNEDPNKREFAEELFSYTDTFNKT 71
+ N++ ++ N + N+R+F E LFS + N++
Sbjct: 39 MGNRLQRIKVENTEENRRQFREILFSVDSSINQS 72
>pdb|1XDL|A Chain A, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|B Chain B, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|C Chain C, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|D Chain D, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|W Chain W, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|X Chain X, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|Y Chain Y, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|Z Chain Z, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDM|A Chain A, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|B Chain B, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|C Chain C, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|D Chain D, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|W Chain W, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|X Chain X, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|Y Chain Y, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|Z Chain Z, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
Length = 365
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 38 LANKMPSLEHNNEDPNKREFAEELFSYTDTFNKT 71
+ N++ ++ N + N+R+F E LFS + N++
Sbjct: 41 MGNRLQRIKVENTEENRRQFREILFSVDSSINQS 74
>pdb|1FDJ|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
Length = 363
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 38 LANKMPSLEHNNEDPNKREFAEELFSYTDTFNKT 71
+ N++ ++ N + N+R+F E LF+ ++ N++
Sbjct: 39 MGNRLQRIKVENSEENRRQFREILFTVDNSINQS 72
>pdb|1SBP|A Chain A, 1.7 Angstroms Refined Structure Of Sulfate-Binding Protein
Involved In Active Transport And Novel Mode Of Sulfate
Binding
Length = 310
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 37 YLANKMPSLEHNNEDPNKRE-FAEELFSYTDTFNKTARSS 75
YLA +L HNN D K E F + LF + + AR S
Sbjct: 137 YLAAWGYALHHNNNDQAKAEDFVKALFKNVEVLDSGARGS 176
>pdb|1T9T|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9U|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9V|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9W|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9X|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9Y|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
Length = 1049
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|3AOA|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
Length = 1053
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|4DX6|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|3NOC|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 1049
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|2HQF|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|2HQC|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|2HQG|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|2J8S|A Chain A, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|B Chain B, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|C Chain C, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
Length = 1055
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|2GIF|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|D Chain D, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|E Chain E, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|F Chain F, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|4DX5|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|1OY6|A Chain A, Structural Basis Of The Multiple Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY8|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY9|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OYD|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|1OYE|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|2I6W|A Chain A, Crystal Structure Of The Multidrug Efflux Transporter Acrb
pdb|2RDD|A Chain A, X-Ray Crystal Structure Of Acrb In Complex With A Novel
Transmembrane Helix.
pdb|3D9B|A Chain A, Symmetric Structure Of E. Coli Acrb
pdb|2W1B|A Chain A, The Structure Of The Efflux Pump Acrb In Complex With Bile
Acid
Length = 1049
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 YAQRVWITRNCKEKIKLVPIDL 25
YA R+W+ N K +L P+D+
Sbjct: 182 YAMRIWMNPNELNKFQLTPVDV 203
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 73 RSSLEGDGNEA-----RVAFHYFETPLSKFNDGPFLQGQFS--LADIAYA--PFIERCKP 123
R G NE R FH PLS F GP S L IA+A F P
Sbjct: 833 RDVFRGPLNEGGLFFERQGFHLPSPPLSDFTHGPSSSSSSSSPLDGIAHAGIAFYAAKLP 892
Query: 124 FLLEAKKYDI 133
L A++YDI
Sbjct: 893 LHLPAQEYDI 902
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,287,271
Number of Sequences: 62578
Number of extensions: 216003
Number of successful extensions: 465
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 42
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)