BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036674
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 130/258 (50%), Gaps = 5/258 (1%)
Query: 87 ISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGN 146
+SL G++ DF + L LDLS N +G +PP + + L L L + FSG
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 147 IPPEVGL-MSHLKFLYIDTNQLDGSIPPEVGQLS-SLVELFLFFNHLSGSVPPSLGN--L 202
+P + L M LK L + N+ G +P + LS SL+ L L N+ SG + P+L
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 203 TNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENH 261
LQEL L N +G IPP+L N L L L FN+ + +P ++ L++ + N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 262 FQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEY 321
+G IP+ L +L + ++ N+LTG I L NLN+I LS N GEI +G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 322 PKLGTLNVSMNNITGGIP 339
L L +S N+ +G IP
Sbjct: 514 ENLAILKLSNNSFSGNIP 531
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 135/313 (43%), Gaps = 60/313 (19%)
Query: 81 VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEG 140
G + ++++ + G D S +L +LD+S N F T P + + + L L + G
Sbjct: 177 CGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNN-FSTGIPFLGDCSALQHLDISG 232
Query: 141 DQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPP------------------EV-----GQ 177
++ SG+ + + LK L I +NQ G IPP E+ G
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 178 LSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTR----LDL 233
+L L L NH G+VPP G+ + L+ L L NN SG +P +D + R LDL
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDL 350
Query: 234 DFNHFTSYLPH-------------------------NVCRG--GALQNFTVAENHFQGTI 266
FN F+ LP N+C+ LQ + N F G I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 267 PKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGT 326
P +L NC+ L+ + ++ N L+G I +LG L + L N GEI L L T
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 327 LNVSMNNITGGIP 339
L + N++TG IP
Sbjct: 471 LILDFNDLTGEIP 483
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 121/270 (44%), Gaps = 24/270 (8%)
Query: 93 GLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVG 152
G GK+ + S+ L L LS N L GTIP + +L+ L DL L + G IP E+
Sbjct: 405 GFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 153 LMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFC 212
+ L+ L +D N L G IP + ++L + L N L+G +P +G L NL L L
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 213 NNLSGSIPPSL-DNPMLTRLDLDFNHFTSYLPHNVCR--GGALQNFTVAENH-------- 261
N+ SG+IP L D L LDL+ N F +P + + G NF + +
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 262 ------------FQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNN 309
FQG + L ++ + G+ S ++ ++D+S N
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 310 FYGEISSNLGEYPKLGTLNVSMNNITGGIP 339
G I +G P L LN+ N+I+G IP
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 89/189 (47%), Gaps = 29/189 (15%)
Query: 109 LAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLD 168
L L L +N G IPP +SN + L L+L + SG IP +G +S L+ L + N L+
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 169 GSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPML 228
G IP E+ + +L L L FN L+G +P L N TNL + L N L+G IP +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI----- 510
Query: 229 TRLDLDFNHFTSYLPHNVCRGGALQNFTV---AENHFQGTIPKSLRNCTSLIRVRVNGNN 285
G L+N + + N F G IP L +C SLI + +N N
Sbjct: 511 ---------------------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 286 LTGNISEAL 294
G I A+
Sbjct: 550 FNGTIPAAM 558
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 31/258 (12%)
Query: 109 LAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLD 168
L L L N+L G IP +SN TNL+ + L ++ +G IP +G + +L L + N
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 169 GSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPML 228
G+IP E+G SL+ L L N +G++P ++ Q + N ++G + N +
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGM 583
Query: 229 TRLD------LDF--------NHFTSYLPHNVCR-------------GGALQNFTVAENH 261
+ L+F N ++ P N+ G++ ++ N
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 262 FQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEY 321
G IPK + + L + + N+++G+I + +G LN +DLS N G I +
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 322 PKLGTLNVSMNNITGGIP 339
L +++S NN++G IP
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 51 RSLLSSWIKDTTNVSSKTSPCAWYG----ISCNDVGRVVNISLPAKGLKGKLH------D 100
RSL+ W+ TN+ + T P A + I+ N + + + G+K + H +
Sbjct: 538 RSLI--WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 101 FSFSSFPHLAYL------DLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLM 154
F L L +++ G P N ++ L + + SG IP E+G M
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 155 SHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNN 214
+L L + N + GSIP EVG L L L L N L G +P ++ LT L E+ L NN
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 215 LSGSIP 220
LSG IP
Sbjct: 716 LSGPIP 721
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 147/322 (45%), Gaps = 38/322 (11%)
Query: 34 EEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKG 93
E L+ +K L +++LL W SS +PC + G++C D +V +I L +K
Sbjct: 12 REIHQLISFKDVLP--DKNLLPDW-------SSNKNPCTFDGVTCRD-DKVTSIDLSSKP 61
Query: 94 LKGKLHDFSFSSFPHLAYLD-------LSHNELFGTIPPQISNLTNLSDLYLEGDQFSGN 146
L + FS+ LS++ + G++ +L+ L L + SG
Sbjct: 62 L-----NVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGP 115
Query: 147 IP--PEVGLMSHLKFLYIDTNQLDGSIPPEVG---QLSSLVELFLFFNHLSGS--VPPSL 199
+ +G S LKFL + +N LD P +V +L+SL L L N +SG+ V L
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173
Query: 200 GN-LTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVA 258
+ L+ L + N +SG + S L LD+ N+F++ +P + ALQ+ ++
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVS-RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231
Query: 259 ENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNL 318
N G +++ CT L + ++ N G I +L Y+ L+ N F GEI L
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289
Query: 319 -GEYPKLGTLNVSMNNITGGIP 339
G L L++S N+ G +P
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVP 311
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 130/258 (50%), Gaps = 5/258 (1%)
Query: 87 ISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGN 146
+SL G++ DF + L LDLS N +G +PP + + L L L + FSG
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 147 IPPEVGL-MSHLKFLYIDTNQLDGSIPPEVGQLS-SLVELFLFFNHLSGSVPPSLGN--L 202
+P + L M LK L + N+ G +P + LS SL+ L L N+ SG + P+L
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 203 TNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENH 261
LQEL L N +G IPP+L N L L L FN+ + +P ++ L++ + N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 262 FQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEY 321
+G IP+ L +L + ++ N+LTG I L NLN+I LS N GEI +G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 322 PKLGTLNVSMNNITGGIP 339
L L +S N+ +G IP
Sbjct: 511 ENLAILKLSNNSFSGNIP 528
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 135/313 (43%), Gaps = 60/313 (19%)
Query: 81 VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEG 140
G + ++++ + G D S +L +LD+S N F T P + + + L L + G
Sbjct: 174 CGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNN-FSTGIPFLGDCSALQHLDISG 229
Query: 141 DQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPP------------------EV-----GQ 177
++ SG+ + + LK L I +NQ G IPP E+ G
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 178 LSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTR----LDL 233
+L L L NH G+VPP G+ + L+ L L NN SG +P +D + R LDL
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDL 347
Query: 234 DFNHFTSYLPH-------------------------NVCRG--GALQNFTVAENHFQGTI 266
FN F+ LP N+C+ LQ + N F G I
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 267 PKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGT 326
P +L NC+ L+ + ++ N L+G I +LG L + L N GEI L L T
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 327 LNVSMNNITGGIP 339
L + N++TG IP
Sbjct: 468 LILDFNDLTGEIP 480
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 121/270 (44%), Gaps = 24/270 (8%)
Query: 93 GLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVG 152
G GK+ + S+ L L LS N L GTIP + +L+ L DL L + G IP E+
Sbjct: 402 GFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 153 LMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFC 212
+ L+ L +D N L G IP + ++L + L N L+G +P +G L NL L L
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 213 NNLSGSIPPSL-DNPMLTRLDLDFNHFTSYLPHNVCR--GGALQNFTVAENH-------- 261
N+ SG+IP L D L LDL+ N F +P + + G NF + +
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Query: 262 ------------FQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNN 309
FQG + L ++ + G+ S ++ ++D+S N
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 310 FYGEISSNLGEYPKLGTLNVSMNNITGGIP 339
G I +G P L LN+ N+I+G IP
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 89/189 (47%), Gaps = 29/189 (15%)
Query: 109 LAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLD 168
L L L +N G IPP +SN + L L+L + SG IP +G +S L+ L + N L+
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 169 GSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPML 228
G IP E+ + +L L L FN L+G +P L N TNL + L N L+G IP +
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI----- 507
Query: 229 TRLDLDFNHFTSYLPHNVCRGGALQNFTV---AENHFQGTIPKSLRNCTSLIRVRVNGNN 285
G L+N + + N F G IP L +C SLI + +N N
Sbjct: 508 ---------------------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 286 LTGNISEAL 294
G I A+
Sbjct: 547 FNGTIPAAM 555
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 31/258 (12%)
Query: 109 LAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLD 168
L L L N+L G IP +SN TNL+ + L ++ +G IP +G + +L L + N
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 169 GSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPML 228
G+IP E+G SL+ L L N +G++P ++ Q + N ++G + N +
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGM 580
Query: 229 TRLD------LDF--------NHFTSYLPHNVCR-------------GGALQNFTVAENH 261
+ L+F N ++ P N+ G++ ++ N
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 262 FQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEY 321
G IPK + + L + + N+++G+I + +G LN +DLS N G I +
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 322 PKLGTLNVSMNNITGGIP 339
L +++S NN++G IP
Sbjct: 701 TMLTEIDLSNNNLSGPIP 718
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 106/245 (43%), Gaps = 37/245 (15%)
Query: 51 RSLLSSWIKDTTNVSSKTSPCAWYG----ISCNDVGRVVNISLPAKGLKGKLH------D 100
RSL+ W+ TN+ + T P A + I+ N + + + G+K + H +
Sbjct: 535 RSLI--WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 101 FSFSSFPHLAYL------DLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLM 154
F L L +++ G P N ++ L + + SG IP E+G M
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 155 SHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNN 214
+L L + N + GSIP EVG L L L L N L G +P ++ LT L E+ L NN
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 215 LSGSI---------PPS--LDNPMLTRLDL---DFNHFTSYLPHNVCRGGALQNFTVAEN 260
LSG I PP+ L+NP L L D ++ Y H G L+N
Sbjct: 713 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHGRRLENL----- 767
Query: 261 HFQGT 265
+FQG
Sbjct: 768 YFQGA 772
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 147/322 (45%), Gaps = 38/322 (11%)
Query: 34 EEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKG 93
E L+ +K L +++LL W SS +PC + G++C D +V +I L +K
Sbjct: 9 REIHQLISFKDVLP--DKNLLPDW-------SSNKNPCTFDGVTCRD-DKVTSIDLSSKP 58
Query: 94 LKGKLHDFSFSSFPHLAYLD-------LSHNELFGTIPPQISNLTNLSDLYLEGDQFSGN 146
L + FS+ LS++ + G++ +L+ L L + SG
Sbjct: 59 L-----NVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGP 112
Query: 147 IP--PEVGLMSHLKFLYIDTNQLDGSIPPEVG---QLSSLVELFLFFNHLSGS--VPPSL 199
+ +G S LKFL + +N LD P +V +L+SL L L N +SG+ V L
Sbjct: 113 VTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 170
Query: 200 GN-LTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVA 258
+ L+ L + N +SG + S L LD+ N+F++ +P + ALQ+ ++
Sbjct: 171 SDGCGELKHLAISGNKISGDVDVS-RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 228
Query: 259 ENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNL 318
N G +++ CT L + ++ N G I +L Y+ L+ N F GEI L
Sbjct: 229 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 286
Query: 319 -GEYPKLGTLNVSMNNITGGIP 339
G L L++S N+ G +P
Sbjct: 287 SGACDTLTGLDLSGNHFYGAVP 308
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 148/312 (47%), Gaps = 38/312 (12%)
Query: 34 EEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCN---DVGRVVNISLP 90
++ ALL+ K L N + LSSW+ TT+ ++T W G+ C+ RV N+ L
Sbjct: 6 QDKQALLQIKKDL--GNPTTLSSWLP-TTDCCNRT----WLGVLCDTDTQTYRVNNLDLS 58
Query: 91 AKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEG-DQFSGNIPP 149
L +P IP ++NL L+ LY+ G + G IPP
Sbjct: 59 GLNLP--------KPYP---------------IPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 150 EVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELI 209
+ ++ L +LYI + G+IP + Q+ +LV L +N LSG++PPS+ +L NL +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 210 LFCNNLSGSIPPSLD--NPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIP 267
N +SG+IP S + + T + + N T +P L ++ N +G
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214
Query: 268 KSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTL 327
+ + ++ + N+L ++ + +G+ NLN +DL N YG + L + L +L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 328 NVSMNNITGGIP 339
NVS NN+ G IP
Sbjct: 274 NVSFNNLCGEIP 285
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 112 LDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSI 171
LDLS+ ++F I I L+ LYL G+ + +P E+ +S+L+ L + N+L S+
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSL 285
Query: 172 PPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQEL 208
P E+G L + F FF+++ ++P GNL NLQ L
Sbjct: 286 PAELGSCFQL-KYFYFFDNMVTTLPWEFGNLCNLQFL 321
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 97 KLHDFS-FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEV-GLM 154
KLHD S +L YL L+ N+L LTNL +L L +Q ++P V +
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132
Query: 155 SHLKFLYIDTNQLDGSIPPEV-GQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCN 213
++L +L + NQL S+P V +L++L EL L +N L LT L++L L+ N
Sbjct: 133 TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 214 NLSGSIP 220
L S+P
Sbjct: 192 QLK-SVP 197
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 98 LHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEV-GLMSH 156
L D F +L YL+L+HN+L LTNL++L L +Q ++P V ++
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQ 182
Query: 157 LKFLYIDTNQLDGSIPPEV-GQLSSLVELFLFFNHLSGSVP 196
LK L + NQL S+P V +L+SL ++L N + P
Sbjct: 183 LKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 97 KLHDF-SFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMS 155
+L D + +S +L LDL++N++ P +S LT L++L L +Q S NI P GL +
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAGL-T 282
Query: 156 HLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVP------------------- 196
L L ++ NQL+ P + L +L L L+FN++S P
Sbjct: 283 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 340
Query: 197 -PSLGNLTNLQELILFCNNLSGSIP 220
SL NLTN+ L N +S P
Sbjct: 341 VSSLANLTNINWLSAGHNQISDLTP 365
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 97 KLHDF-SFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMS 155
+L D + +S +L LDL++N++ P +S LT L++L L +Q S NI P GL +
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAGL-T 283
Query: 156 HLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVP------------------- 196
L L ++ NQL+ P + L +L L L+FN++S P
Sbjct: 284 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 341
Query: 197 -PSLGNLTNLQELILFCNNLSGSIP 220
SL NLTN+ L N +S P
Sbjct: 342 VSSLANLTNINWLSAGHNQISDLTP 366
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 46 LQIHNRSLLSSW---IKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFS 102
L N S+ SW ++ N++ + +Y I N N+ L L+ L +S
Sbjct: 13 LAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYS 71
Query: 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQF-SGNIPPEVGLMSHLKFLY 161
F SFP L LDLS E+ +L++LS L L G+ S + GL S K +
Sbjct: 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131
Query: 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHL-SGSVPPSLGNLTNLQELILFCNNLSG 217
++TN P +G L +L EL + N + S +P NLTNL+ L L N +
Sbjct: 132 VETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 97 KLHDFS-FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGL-M 154
++ +FS F S +L YLD+SH + L++L L + G+ F N P++ +
Sbjct: 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493
Query: 155 SHLKFLYIDTNQLDGSIPPEVGQLSSL 181
+L FL + QL+ P LSSL
Sbjct: 494 RNLTFLDLSQCQLEQLSPTAFNSLSSL 520
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 131 TNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLF--- 187
TN LYL +Q + P + +LK LY+ +NQL G++P VG SL +L +
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALP--VGVFDSLTQLTVLDLG 96
Query: 188 FNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPH 244
N L+ L +L+EL + CN L+ +P ++ LT L LD N S +PH
Sbjct: 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPH 152
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162
F S L LDL N+L L +L +L++ ++ + +P + ++HL L +
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 163 DTNQLDGSIPP-EVGQLSSLVELFLFFN 189
D NQL SIP +LSSL +LF N
Sbjct: 143 DQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 4/165 (2%)
Query: 55 SSWIKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDL 114
S ++ N++ + +Y I N N+ L L+ L +SF SFP L LDL
Sbjct: 2 SPCVEVVPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDL 60
Query: 115 SHNELFGTIPPQISNLTNLSDLYLEGDQF-SGNIPPEVGLMSHLKFLYIDTNQLDGSIPP 173
S E+ +L++LS L L G+ S + GL S K + ++TN P
Sbjct: 61 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 120
Query: 174 EVGQLSSLVELFLFFNHL-SGSVPPSLGNLTNLQELILFCNNLSG 217
+G L +L EL + N + S +P NLTNL+ L L N +
Sbjct: 121 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 97 KLHDFS-FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGL-M 154
++ +FS F S +L YLD+SH + L++L L + G+ F N P++ +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 155 SHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSL-GNLTNLQELILFCN 213
+L FL + QL+ P LSSL L + N L SVP + LT+LQ++ L N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528
Query: 214 NLSGSIP 220
S P
Sbjct: 529 PWDCSCP 535
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 63 NVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGT 122
N++ + +Y I N N+ L L+ L +SF SFP L LDLS E+
Sbjct: 9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 123 IPPQISNLTNLSDLYLEGDQF-SGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSL 181
+L++LS L L G+ S + GL S K + ++TN P +G L +L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTL 126
Query: 182 VELFLFFNHL-SGSVPPSLGNLTNLQELILFCNNLSG 217
EL + N + S +P NLTNL+ L L N +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 98 LHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQF-SGNIPPEVGLMSH 156
L +SF SFP L LDLS E+ +L++LS L L G+ S + GL S
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 157 LKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHL-SGSVPPSLGNLTNLQELILFCNNL 215
K + ++TN P +G L +L EL + N + S +P NLTNL+ L L N +
Sbjct: 104 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 216 SG 217
Sbjct: 163 QS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 98 LHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQF-SGNIPPEVGLMSH 156
L +SF SFP L LDLS E+ +L++LS L L G+ S + GL S
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 157 LKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHL-SGSVPPSLGNLTNLQELILFCNNL 215
K + ++TN P +G L +L EL + N + S +P NLTNL+ L L N +
Sbjct: 105 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 216 SG 217
Sbjct: 164 QS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
Query: 58 IKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHN 117
++ N++ + +Y I N N+ L L+ L +SF SFP L LDLS
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC 62
Query: 118 ELFGTIPPQISNLTNLSDLYLEGDQF-SGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVG 176
E+ +L++LS L L G+ S + GL S K + ++TN P +G
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IG 121
Query: 177 QLSSLVELFLFFNHL-SGSVPPSLGNLTNLQELILFCNNLSG 217
L +L EL + N + S +P NLTNL+ L L N +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 106 FPHLAYLDLSHNEL--FGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163
+L L L+ N+L GT+ ++LTNL+DL L +Q S N+ P GL + L L +
Sbjct: 215 LTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQIS-NLAPLSGL-TKLTELKLG 268
Query: 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPS 222
NQ+ +I P G L++L L L N L P + NL NL L L+ NN+S P S
Sbjct: 269 ANQI-SNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 323
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 106 FPHLAYLDLSHNEL--FGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163
+L L L+ N+L GT+ ++LTNL+DL L +Q S N+ P GL + L L +
Sbjct: 216 LTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQIS-NLAPLSGL-TKLTELKLG 269
Query: 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPS 222
NQ+ +I P G L++L L L N L P + NL NL L L+ NN+S P S
Sbjct: 270 ANQI-SNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 324
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 63 NVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGT 122
N++ + +Y I N N+ L L+ L +SF SFP L LDLS E+
Sbjct: 9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 123 IPPQISNLTNLSDLYLEGDQF-SGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSL 181
+L++LS L L G+ S + GL S K + ++TN P +G L +L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTL 126
Query: 182 VELFLFFNHL-SGSVPPSLGNLTNLQELILFCNNLSG 217
EL + N + S +P NLTNL+ L L N +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 97 KLHDFS-FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGL-M 154
++ +FS F S +L YLD+SH + L++L L + G+ F N P++ +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 155 SHLKFLYIDTNQLDGSIPPEVGQLSSL 181
+L FL + QL+ P LSSL
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSL 496
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 106 FPHLAYLDLSHNEL--FGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163
+L L L+ N+L GT+ ++LTNL+DL L +Q S N+ P GL + L L +
Sbjct: 216 LTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQIS-NLAPLSGL-TKLTELKLG 269
Query: 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPS 222
NQ+ +I P G L++L L L N L P + NL NL L L+ NN+S P S
Sbjct: 270 ANQI-SNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 324
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 106 FPHLAYLDLSHNEL--FGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163
+L L L+ N+L GT+ ++LTNL+DL L +Q S N+ P GL + L L +
Sbjct: 219 LTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQIS-NLAPLSGL-TKLTELKLG 272
Query: 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPS 222
NQ+ +I P G L++L L L N L P + NL NL L L+ NN+S P S
Sbjct: 273 ANQI-SNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 327
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 106 FPHLAYLDLSHNEL--FGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163
+L L L+ N+L GT+ ++LTNL+DL L +Q S N+ P GL + L L +
Sbjct: 220 LTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQIS-NLAPLSGL-TKLTELKLG 273
Query: 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPS 222
NQ+ +I P G L++L L L N L P + NL NL L L+ NN+S P S
Sbjct: 274 ANQI-SNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 328
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
Query: 58 IKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHN 117
++ N++ + +Y I N N+ L L+ L +SF SFP L LDLS
Sbjct: 6 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC 64
Query: 118 ELFGTIPPQISNLTNLSDLYLEGDQF-SGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVG 176
E+ +L++LS L L G+ S + GL S K + ++TN P +G
Sbjct: 65 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP-IG 123
Query: 177 QLSSLVELFLFFNHL-SGSVPPSLGNLTNLQELILFCNNLSG 217
L +L EL + N + S +P NLTNL+ L L N +
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEV-GLMSHLKFLY 161
F L L L++N+L +LT L LYL G+Q ++P V ++ LK L
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELR 137
Query: 162 IDTNQLDGSIPP-EVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIP 220
++TNQL SIP +L++L L L N L + L LQ + LF N S
Sbjct: 138 LNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Query: 221 PSL 223
+L
Sbjct: 197 ETL 199
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEV-GLMSHLKFLY 161
F L L L++N+L +LT L LYL G+Q ++P V ++ LK L
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELR 137
Query: 162 IDTNQLDGSIPP-EVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGS 218
++TNQL SIP +L++L L L N L + L LQ + LF N S
Sbjct: 138 LNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 127/327 (38%), Gaps = 53/327 (16%)
Query: 48 IHNRSLLSSWIKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFS---FS 104
+ N +L S W+ + + A + C+ +N+ K + D S F
Sbjct: 221 LQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQ------KHRFSDLSSSTFR 274
Query: 105 SFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDT 164
F + LDL+ L G +P I + +L L L + F L+ LYI
Sbjct: 275 CFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKG 333
Query: 165 NQLDGSIPPE-VGQLSSLVELFLFFNHLSGS--VPPSLGNLTNLQELILFCNNLSGSIPP 221
N + + +L +L +L L + + S L NL +LQ L NLS + P
Sbjct: 334 NMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYL-----NLSYNEPL 388
Query: 222 SLDN------PMLTRLDLDFNHFTSYLPHNVCRG-------------------------G 250
L++ P L LD+ F H PH+ +
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 251 ALQNFTVAENHFQ-GTIPKS--LRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSR 307
L++ + N FQ G+I K+ L+ SL + ++ NL +A N+N++DLS
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSH 508
Query: 308 NNFYGEISSNLGEYPKLGTLNVSMNNI 334
N+ G+ L L LN++ NNI
Sbjct: 509 NSLTGDSMDALSHLKGL-YLNMASNNI 534
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 108 HLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEV-GLMSHLKFLYIDTNQ 166
YLDL N L LT+L+ LYL G++ ++P V ++ L +L + TNQ
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87
Query: 167 LDGSIPPEV-GQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIP 220
L S+P V +L+ L EL L N L LT L++L L+ N L S+P
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVP 140
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEV-GLMSHLKFLY 161
F+ L YL+LS N+L LT L +L L +Q ++P V ++ LK L
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLR 130
Query: 162 IDTNQLDGSIPPEV-GQLSSLVELFLFFNHLSGSVP 196
+ NQL S+P V +L+SL ++L N + P
Sbjct: 131 LYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 97 KLHDFS-FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMS 155
KLHD S +L YL L+ N+L LTNL +L L +Q ++
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133
Query: 156 HLKFLYIDTNQLDGSIPPEV-GQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNN 214
+L +LY+ NQL S+P V +L++L L L N L LT L++L L N
Sbjct: 134 NLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 215 LSGSIP 220
L S+P
Sbjct: 193 LK-SVP 197
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 98 LHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHL 157
L D F +L YL L HN+L LTNL+ L L+ +Q ++ L
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 158 KFLYIDTNQLDGSIPPEV-GQLSSLVELFLFFN 189
K L ++ NQL S+P V +L+SL ++L N
Sbjct: 184 KQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNN 215
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162
F +L L L N+L LTNL+ LYL +Q +++L L +
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 163 DTNQLDGSIPPEV-GQLSSLVELFLFFNHLSGSVPPSL-GNLTNLQELILFCN 213
D NQL S+P V +L+ L +L L N L SVP + LT+L + L N
Sbjct: 165 DNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEV-GLMSHLKFLY 161
F +L L ++ N+L L NL++L L+ +Q ++PP V ++ L +L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLS 139
Query: 162 IDTNQLDGSIPPEV-GQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLS 216
+ N+L S+P V +L+SL EL L+ N L + LT L+ L L N L
Sbjct: 140 LGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 76 ISCNDVGRVVNIS---LPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTN 132
IS +D+ R VN+ L + G+ + + SFSS L +LDLS+N L L++
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 133 LSDLYLEGDQFSGNIPPEVGLMSHLKFLYI----DTNQLDGSIPPEVGQLSSLVELFLFF 188
L+ L L G+ + E L SHL L I + + + L+ L EL +
Sbjct: 126 LTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183
Query: 189 NHLSGSVPPSLGNLTNLQELILFCNN------LSGSIPPSLDNPMLTRLDLDFNHFT 239
+ L P SL ++ N+ LIL + + S++ L DLD HF+
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 113 DLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIP 172
DLS +++F + S+ T+L L L ++ + ++HLK L +DTNQL S+P
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVP 339
Query: 173 PEV-GQLSSLVELFLFFNHLSGSVP 196
+ +L+SL +++L N S P
Sbjct: 340 DGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 100 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
NLT + L NL+ + L N+ Y
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 100 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
NLT + L NL+ + L N+ Y
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 79/188 (42%), Gaps = 4/188 (2%)
Query: 102 SFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161
SF HL L LS N + + L NL+ L L ++ + +S LK L+
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142
Query: 162 IDTNQLDGSIPP-EVGQLSSLVELFL-FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSI 219
+ N ++ SIP ++ SL L L LS + L+NL+ L L NL I
Sbjct: 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200
Query: 220 PPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRV 279
P L LDL NH ++ P + LQ + ++ Q + N SL+ +
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 280 RVNGNNLT 287
+ NNLT
Sbjct: 261 NLAHNNLT 268
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 80 DVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLE 139
D+G + +S ++G +F +L YL+L+ L P ++ L L +L L
Sbjct: 166 DLGELKRLSYISEG--------AFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLS 215
Query: 140 GDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLS 192
G+ S P + HL+ L++ +Q+ L SLVE+ L N+L+
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 101 FSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFL 160
++F+ P L LDL ++ L+ +S+ EG +S+L++L
Sbjct: 154 YAFNRIPSLRRLDLG----------ELKRLSYISEGAFEG-------------LSNLRYL 190
Query: 161 YIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIP 220
+ L P + L L EL L NHLS P S L +LQ+L + + +
Sbjct: 191 NLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248
Query: 221 PSLDN-PMLTRLDLDFNHFTSYLPHNV 246
+ DN L ++L N+ T LPH++
Sbjct: 249 NAFDNLQSLVEINLAHNNLT-LLPHDL 274
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 101 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
NLT + L NL+ + L N+ Y
Sbjct: 160 NLTELPAGLLNGLENLDTLLLQENSLY 186
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 100 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
NLT + L NL+ + L N+ Y
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 100 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
NLT + L NL+ + L N+ Y
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 86 NISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSG 145
NI L LK L +SFS+F L +LDLS E+ L +LS+L L G+
Sbjct: 31 NIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 89
Query: 146 NIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHL-SGSVPPSLGNLTN 204
P ++ L+ L +L +GQL +L +L + N + S +P NLTN
Sbjct: 90 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 149
Query: 205 L 205
L
Sbjct: 150 L 150
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 86 NISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSG 145
NI L LK L +SFS+F L +LDLS E+ L +LS+L L G+
Sbjct: 36 NIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 146 NIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHL-SGSVPPSLGNLTN 204
P ++ L+ L +L +GQL +L +L + N + S +P NLTN
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
Query: 205 L 205
L
Sbjct: 155 L 155
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 76 ISCNDVGRVVNIS---LPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTN 132
IS +D+ R VN+ L + G+ + + SFSS L +LDLS+N L L++
Sbjct: 41 ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
Query: 133 LSDLYLEGDQFSGNIPPEVGLMSHLKFLYI----DTNQLDGSIPPEVGQLSSLVELFLFF 188
L+ L L G+ + E L SHL L I + + + L+ L EL +
Sbjct: 100 LTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 157
Query: 189 NHLSGSVPPSLGNLTNLQELILFCNN------LSGSIPPSLDNPMLTRLDLDFNHFT 239
+ L P SL ++ N+ LIL + + S++ L DLD HF+
Sbjct: 158 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 214
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 96/252 (38%), Gaps = 35/252 (13%)
Query: 77 SCNDVG-RVVNISLPAKGLKGKLH--------DFSFSSFPHLAYLDLSHNELFGTIPPQI 127
SC G + V +PA + LH SF S +L L L N L G
Sbjct: 16 SCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAF 75
Query: 128 SNLTNLSDLYL-EGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186
+ LT L L L + Q P + HL L++D L P L++L L+L
Sbjct: 76 TGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYL 135
Query: 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNV 246
N+L + +L NL L L N + PS+ P +
Sbjct: 136 QDNNLQALPDNTFRDLGNLTHLFLHGNRI-----PSV-------------------PEHA 171
Query: 247 CRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDL 305
RG +L + +NH P + R+ L+ + + NNL+ +E L +L Y+ L
Sbjct: 172 FRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRL 231
Query: 306 SRNNFYGEISSN 317
+ N + + +
Sbjct: 232 NDNPWVCDCRAR 243
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 132 NLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHL 191
++++LYL+G+QF+ +P E+ HL + + N++ ++ L+ L L +N L
Sbjct: 32 DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 192 SGSVPPSLGNLTNLQELILFCNNLS 216
P + L +L+ L L N++S
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEV--GLMSHLKFL 160
S++ HL +DLS+N + SN+T L L L ++ IPP GL S L+ L
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKS-LRLL 107
Query: 161 YIDTNQLDGSIPPE--VGQLSSLVELFLFFNHL 191
+ N D S+ PE LS+L L + N L
Sbjct: 108 SLHGN--DISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 100 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
+LT + L NL+ + L N+ Y
Sbjct: 159 DLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 23/154 (14%)
Query: 71 CAWYGISCNDVGRV-VNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISN 129
C+ I CN G V +P+ + +L S PH +
Sbjct: 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF----------------DK 50
Query: 130 LTNLSDLYLEGDQFSGNIPPEV-GLMSHLKFLYIDTNQLDGSIPPEV-GQLSSLVELFLF 187
LT L+ L L +Q ++P V ++ L LY+ N+L S+P V +L+ L EL L
Sbjct: 51 LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
Query: 188 FNHLSGSVPPSL-GNLTNLQELILFCNNLSGSIP 220
N L SVP + LT+LQ++ L N S P
Sbjct: 109 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 100 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
LT + L NL+ + L N+ Y
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 100 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
LT + L NL+ + L N+ Y
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 100 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
LT + L NL+ + L N+ Y
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 226 PMLTRLDLDFNHFTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
P LT LD+ FN TS LP RG G LQ + N + P L L ++ + N
Sbjct: 100 PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311
LT + L NL+ + L N+ Y
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 100 DFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSH-LK 158
D F PHL L+L N+L G P +++ +L L G+ I ++ L H LK
Sbjct: 47 DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL-GENKIKEISNKMFLGLHQLK 105
Query: 159 FLYIDTNQLDGSIPPEVGQLSSLVELFLFFN 189
L + NQ+ +P L+SL L L N
Sbjct: 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 100 DFSFSSF-PHLAYLDLSHNELFG-TIPPQISNLTNLSDLYLEGDQFSG-NIPPEVGLMSH 156
D S F L YLDLSHN+L + P + NL L L + F I E G MS
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKISCHPTV----NLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 157 LKFLYIDTNQLDGS 170
LKFL + T L+ S
Sbjct: 117 LKFLGLSTTHLEKS 130
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 25/175 (14%)
Query: 111 YLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGS 170
+LD S+N L T+ +LT L L L+ M+ LK L
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQ--------------MNQLKEL--------SK 365
Query: 171 IPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLT-NLQELILFCNNLSGSIPPSLDNPMLT 229
I Q+ SL +L + N +S + T +L L + N L+ +I L P +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIK 424
Query: 230 RLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
LDL N S +P V + ALQ VA N + TSL ++ ++ N
Sbjct: 425 VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 101 FSFSSFPHLAYLDLSHNELFGTI-PPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKF 159
++F+ P L LDL + I L NL YL + P + + L+
Sbjct: 125 YAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR--YLNLGMCNLKDIPNLTALVRLEE 182
Query: 160 LYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSI 219
L + N+LD P L+SL +L+L ++ + +L +L+EL L NNL S+
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SL 241
Query: 220 PPSLDNPM--LTRLDLDFN 236
P L P+ L R+ L+ N
Sbjct: 242 PHDLFTPLHRLERVHLNHN 260
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 97 KLHDFS-FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEV-GLM 154
++ +FS F S +L YLD+SH + L++L L + G+ F N P++ +
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174
Query: 155 SHLKFLYIDTNQLDGSIPPEVGQLSSL 181
+L FL + QL+ P LSSL
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLSSL 201
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 101 FSFSSFPHLAYLDLSHNELFGTI-PPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKF 159
++F+ P L LDL + I L NL YL + P + + L+
Sbjct: 125 YAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR--YLNLGMCNLKDIPNLTALVRLEE 182
Query: 160 LYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSI 219
L + N+LD P L+SL +L+L ++ + +L +L+EL L NNL S+
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SL 241
Query: 220 PPSLDNPM--LTRLDLDFN 236
P L P+ L R+ L+ N
Sbjct: 242 PHDLFTPLHRLERVHLNHN 260
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 96 GKLHDFSFSSFPHLAYLDLSHNELFGTI-PPQISNLTNLSDLYLEGDQFSGNIPPEVGLM 154
++ +F+ L LDLS N ++ P L L L+L+ P +
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 127
Query: 155 SHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNN 214
+ L++LY+ N L L +L LFL N +S + L +L L+L N
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 187
Query: 215 LSGSIP 220
++ P
Sbjct: 188 VAHVHP 193
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 90/252 (35%), Gaps = 35/252 (13%)
Query: 77 SCNDVG-RVVNISLPAKGLKGKLH--------DFSFSSFPHLAYLDLSHNELFGTIPPQI 127
SC G + V + +PA + LH SF + +L L L N L
Sbjct: 16 SCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 75
Query: 128 SNLTNLSDLYL-EGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186
+ L L L L + Q P + L L++D L P L++L L+L
Sbjct: 76 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 135
Query: 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNV 246
N L + +L NL L L N +S +P
Sbjct: 136 QDNALQALPDDTFRDLGNLTHLFLHGNRISS------------------------VPERA 171
Query: 247 CRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDL 305
RG +L + +N P + R+ L+ + + NNL+ +EAL L Y+ L
Sbjct: 172 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 231
Query: 306 SRNNFYGEISSN 317
+ N + + +
Sbjct: 232 NDNPWVCDCRAR 243
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 96 GKLHDFSFSSFPHLAYLDLSHN-ELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLM 154
++ +F+ L LDLS N +L P L L L+L+ P +
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128
Query: 155 SHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNN 214
+ L++LY+ N L L +L LFL N +S + L +L L+L N
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 215 LSGSIP 220
++ P
Sbjct: 189 VAHVHP 194
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 90/252 (35%), Gaps = 35/252 (13%)
Query: 77 SCNDVG-RVVNISLPAKGLKGKLH--------DFSFSSFPHLAYLDLSHNELFGTIPPQI 127
SC G + V + +PA + LH SF + +L L L N L
Sbjct: 17 SCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
Query: 128 SNLTNLSDLYL-EGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186
+ L L L L + Q P + L L++D L P L++L L+L
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136
Query: 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNV 246
N L + +L NL L L N +S +P
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISS------------------------VPERA 172
Query: 247 CRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDL 305
RG +L + +N P + R+ L+ + + NNL+ +EAL L Y+ L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232
Query: 306 SRNNFYGEISSN 317
+ N + + +
Sbjct: 233 NDNPWVCDCRAR 244
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 113 DLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIP 172
DLS +++F + S+ T+L L L ++ + ++HL L + N L GSI
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 173 PEVGQ-LSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSL 223
+ + L L L L +NH+ S L NL+EL L N L S+P +
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI 390
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 97 KLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLE-------GDQFSGNIPP 149
K+ D +F HL L+LS N L NL L L L GDQ +P
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP- 371
Query: 150 EVGLMSHLKFLYIDTNQLDGSIPPEV-GQLSSLVELFLFFNHLSGSVP 196
+LK L +DTNQL S+P + +L+SL +++L N S P
Sbjct: 372 ------NLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 96 GKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMS 155
G + F + L LDLS+N + L NL +L L+ +Q ++
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395
Query: 156 HLKFLYIDTNQLDGSIP 172
L+ +++ TN D S P
Sbjct: 396 SLQKIWLHTNPWDCSCP 412
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 97 KLHDFS-FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMS 155
K+ D S ++ L +L++ N++ + +LT L L + +Q S + +S
Sbjct: 232 KITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISD--ISVLNNLS 287
Query: 156 HLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVP 196
L L+++ NQL +G L++L LFL NH++ P
Sbjct: 288 QLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 154 MSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCN 213
+++L++L ++ NQ+ P + L L L++ N ++ +L NLTNL+EL L +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 214 NLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNC 273
N+S I P + L+L NH S L + L TV E+ + P + N
Sbjct: 121 NIS-DISPLANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IANL 176
Query: 274 TSLIRVRVNGNNL 286
T L + +N N +
Sbjct: 177 TDLYSLSLNYNQI 189
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 34/235 (14%)
Query: 127 ISNLTNLSDLYLEGDQFSGNIPPEVGLM----------------------SHLKFLYIDT 164
+ NLTNL +LYL D S +I P L + L +L +
Sbjct: 106 LQNLTNLRELYLNEDNIS-DISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTE 164
Query: 165 NQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD 224
+++ P + L+ L L L +N + P L +LT+L + N ++ I P +
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITPVAN 219
Query: 225 NPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284
L L + N T P + L + N ++++ T L + V G+
Sbjct: 220 XTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNV-GS 274
Query: 285 NLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339
N +IS L LN + L+ N E +G L TL +S N+IT P
Sbjct: 275 NQISDIS-VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 25/177 (14%)
Query: 56 SWIKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFS-----------FS 104
S +KD T +++ T Y +S N ++ +IS P L LH F+ +
Sbjct: 165 SKVKDVTPIANLTD---LYSLSLN-YNQIEDIS-PLASLTS-LHYFTAYVNQITDITPVA 218
Query: 105 SFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDT 164
+ L L + +N++ P ++NL+ L+ L + +Q S V ++ LK L + +
Sbjct: 219 NXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGS 274
Query: 165 NQL-DGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIP 220
NQ+ D S+ + QL+SL FL N L +G LTNL L L N+++ P
Sbjct: 275 NQISDISVLNNLSQLNSL---FLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3SY3|A Chain A, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis
pdb|3SY3|B Chain B, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis
pdb|3SY3|C Chain C, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis
pdb|3SY3|D Chain D, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis
pdb|3TJ7|A Chain A, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis In Complex With Amp
pdb|3TJ7|B Chain B, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis In Complex With Amp
pdb|3TJ7|C Chain C, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis In Complex With Amp
pdb|3TJ7|D Chain D, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis In Complex With Amp
Length = 195
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 225 NPMLTRLDLDF-NHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNG 283
N ++++F N T H +C+ +++ FT NH+ T SL+ S +R+R G
Sbjct: 2 NAXTQEIEIEFKNIVTEEEFHALCKSFSIEVFTKQVNHYFETPNSSLKEAGSALRIRHKG 61
Query: 284 NNLT 287
T
Sbjct: 62 ETYT 65
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 117/286 (40%), Gaps = 40/286 (13%)
Query: 63 NVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGT 122
N +K + A+YG+ D +V+N+S L G+L+ +F P +AY+DL N +
Sbjct: 300 NKINKIADEAFYGL---DNLQVLNLSY---NLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 123 IPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLV 182
L L L L N + + + +++ N+L P++ ++L+
Sbjct: 354 QDQTFKFLEKLQTLDLR-----DNALTTIHFIPSIPDIFLSGNKL--VTLPKINLTANLI 406
Query: 183 ELFLFFNHLSGSVPPSLGNLT------NLQELILFCNNL---SGSIPPSLDNPMLTRLDL 233
HLS + +L L +LQ LIL N SG PS +NP L +L L
Sbjct: 407 -------HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS-ENPSLEQLFL 458
Query: 234 DFNHFTSYLPHNVCRG-----GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTG 288
N +C LQ + N+ P + T+L + +N N LT
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT- 517
Query: 289 NISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNI 334
+ + NL +D+SRN ++ N + L L+++ N
Sbjct: 518 -VLSHNDLPANLEILDISRNQL---LAPNPDVFVSLSVLDITHNKF 559
>pdb|4DB3|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of
N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus
Length = 327
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 236 NHFTSYLPHNVCRGGALQNFTVAENHFQGTIPK---SLRNCTSLIRVR 280
N FT+ PH V GG L NF + +PK S+ C +I+ +
Sbjct: 263 NIFTANDPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAK 310
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 102 SFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFS 144
F+SFPHL L+L+ N + P +NL NL L L ++
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 165 NQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD 224
N+ +G I P G+ SS E HLSGS G+L + QE+ F N + +I
Sbjct: 162 NEPEGEIKP--GESSS--EPCFDTRHLSGSGAGWAGHLYSAQEIGRFVNWQAAAIKEVDP 217
Query: 225 NPMLT------RLDLDFNHFTS-YLPHNVCRGGALQNFTVA---------ENHFQGTIP 267
M+T + D D F + Y H + + G Q+ T++ +NHF P
Sbjct: 218 GAMVTVGSWNMKADTDAMGFHNLYSDHCLVKAGGKQSGTLSFYQVHTYDWQNHFGNESP 276
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 228 LTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN--- 284
L LDL H LP + L+ ++ NHF S N SL + + GN
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKK 335
Query: 285 -NLTGNISEALGIYPNLNYIDLSRNNFYGE--ISSNLGEYPKLGTLNVSMNNITG 336
+L E LG NL +DLS N+ S L L TLN+S N G
Sbjct: 336 LHLGVGCLEKLG---NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG 387
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 116 HNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEV 175
N ++P I T+ L+L +Q + P + +L+ LY ++N+L +IP V
Sbjct: 20 QNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGV 76
Query: 176 -GQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILF 211
+L+ L +L L NHL + NL +L + L+
Sbjct: 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 92/229 (40%), Gaps = 27/229 (11%)
Query: 107 PHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQ 166
P A LDL +N++ NL NL L L ++ S P + L+ LY+ NQ
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 167 LDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNP 226
L +P ++ + +L EL + N ++ L + + L N L S ++N
Sbjct: 112 LK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENG 165
Query: 227 MLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNL 286
+ L +A+ + TIP+ L SL + ++GN +
Sbjct: 166 AFQGMK------------------KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI 204
Query: 287 TGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335
T + +L NL + LS N+ + +L P L L+++ N +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 92/229 (40%), Gaps = 27/229 (11%)
Query: 107 PHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQ 166
P A LDL +N++ NL NL L L ++ S P + L+ LY+ NQ
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 167 LDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNP 226
L +P ++ + +L EL + N ++ L + + L N L S ++N
Sbjct: 112 LK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENG 165
Query: 227 MLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNL 286
+ L +A+ + TIP+ L SL + ++GN +
Sbjct: 166 AFQGMK------------------KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI 204
Query: 287 TGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335
T + +L NL + LS N+ + +L P L L+++ N +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 102 SFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161
+F +L YL+L + P ++ L L +L + G+ F P +S LK L+
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248
Query: 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSL 199
+ +Q+ L+SLVEL L N+LS S+P L
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDL 285
>pdb|1G63|A Chain A, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|B Chain B, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|C Chain C, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|D Chain D, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|E Chain E, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|F Chain F, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|G Chain G, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|H Chain H, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|I Chain I, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|J Chain J, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|K Chain K, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|L Chain L, Peptidyl-Cysteine Decarboxylase Epid
Length = 181
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 181 LVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNH 237
+VEL F+ ++ PS N N L LFC+NL I +P+L +++ NH
Sbjct: 22 IVELKQHFDEVNILFSPSSKNFINTDVLKLFCDNLYDEIK----DPLLNHINIVENH 74
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 42 WKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDF 101
+K +L N S L +T +VS + Y +C ++ ++L + L G +
Sbjct: 393 FKVALMTKNMSSL-----ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--- 444
Query: 102 SFSSFP-HLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFL 160
F P + LDL HN +IP +++L L +L + +Q ++ L+++
Sbjct: 445 -FRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502
Query: 161 YIDTNQLDGSIP 172
++ N D + P
Sbjct: 503 WLHDNPWDCTCP 514
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162
+ + L+LS N L I+ L ++ L L Q + ++ P GL S+L+ LY+
Sbjct: 87 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT-DVTPLAGL-SNLQVLYL 142
Query: 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPS 222
D NQ+ +I P G L++L L + N ++ P L NL+ L L N +S I P
Sbjct: 143 DLNQI-TNISPLAG-LTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKIS-DISPL 197
Query: 223 LDNPMLTRLDLDFNHFTSYLP 243
P L + L N + P
Sbjct: 198 ASLPNLIEVHLKDNQISDVSP 218
>pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|D Chain D, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|G Chain G, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|L Chain L, Epid H67n Complexed With Substrate Peptide Dsytc
Length = 181
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 181 LVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNH 237
+VEL F+ ++ PS N N L LFC+NL I +P+L +++ NH
Sbjct: 22 IVELKQHFDEVNILFSPSSKNFINTDVLKLFCDNLYDEIK----DPLLNNINIVENH 74
>pdb|2O4V|A Chain A, An Arginine Ladder In Oprp Mediates Phosphate Specific
Transfer Across The Outer Membrane
pdb|2O4V|B Chain B, An Arginine Ladder In Oprp Mediates Phosphate Specific
Transfer Across The Outer Membrane
pdb|2O4V|C Chain C, An Arginine Ladder In Oprp Mediates Phosphate Specific
Transfer Across The Outer Membrane
Length = 411
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 230 RLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGN 289
RL D+ F Y +N A F A F GT + + + R GN+ G
Sbjct: 34 RLQADYGRFDGYYTNNGNTADAAY-FRRAYLEFGGTAYRDWKYQINYDLSRNVGNDSAGY 92
Query: 290 ISEALGIYPNLNYIDLSRNNFY 311
EA Y N ++L FY
Sbjct: 93 FDEASVTYTGFNPVNLKFGRFY 114
>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 173 PEVGQLSSLVELFLFFNHLSGSVP 196
PE+ +S E +L++ HL+G VP
Sbjct: 315 PEIRAISMQAEEYLYYKHLNGDVP 338
>pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 173 PEVGQLSSLVELFLFFNHLSGSVP 196
PE+ +S E +L++ HL+G VP
Sbjct: 218 PEIRAISMQAEEYLYYKHLNGDVP 241
>pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 173 PEVGQLSSLVELFLFFNHLSGSVP 196
PE+ +S E +L++ HL+G VP
Sbjct: 219 PEIRAISMQAEEYLYYKHLNGDVP 242
>pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 173 PEVGQLSSLVELFLFFNHLSGSVP 196
PE+ +S E +L++ HL+G VP
Sbjct: 220 PEIRAISMQAEEYLYYKHLNGDVP 243
>pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 173 PEVGQLSSLVELFLFFNHLSGSVP 196
PE+ +S E +L++ HL+G VP
Sbjct: 208 PEIRAISMQAEEYLYYKHLNGDVP 231
>pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 173 PEVGQLSSLVELFLFFNHLSGSVP 196
PE+ +S E +L++ HL+G VP
Sbjct: 208 PEIRAISMQAEEYLYYKHLNGDVP 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,568,836
Number of Sequences: 62578
Number of extensions: 397133
Number of successful extensions: 1203
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 248
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)