Query 036674
Match_columns 339
No_of_seqs 302 out of 4414
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:23:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2E-40 4.4E-45 335.7 25.7 300 31-339 26-349 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.4E-32 5.2E-37 277.0 17.7 255 82-339 118-373 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.3E-28 4.9E-33 218.5 0.6 254 81-335 124-405 (873)
4 KOG4194 Membrane glycoprotein 99.9 8E-28 1.7E-32 215.0 3.9 251 84-335 151-429 (873)
5 KOG0444 Cytoskeletal regulator 99.9 9E-26 2E-30 203.7 -3.0 242 83-333 104-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.3E-25 4.9E-30 201.1 -4.1 248 81-335 77-352 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.4E-24 3.1E-29 186.5 -9.1 239 84-335 70-310 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 7.3E-25 1.6E-29 188.2 -11.8 244 84-337 47-290 (565)
9 PLN03210 Resistant to P. syrin 99.8 2.6E-19 5.7E-24 183.1 19.8 236 83-331 612-878 (1153)
10 PRK15387 E3 ubiquitin-protein 99.8 1.6E-19 3.4E-24 173.5 13.4 223 83-339 223-462 (788)
11 PLN03210 Resistant to P. syrin 99.8 2.4E-18 5.1E-23 176.2 20.5 239 84-335 591-859 (1153)
12 PRK15370 E3 ubiquitin-protein 99.8 2.2E-19 4.8E-24 173.3 11.5 226 84-335 180-428 (754)
13 KOG4237 Extracellular matrix p 99.8 4E-21 8.6E-26 165.0 -0.5 252 82-335 67-359 (498)
14 cd00116 LRR_RI Leucine-rich re 99.8 2.4E-21 5.3E-26 172.6 -2.0 251 83-334 24-319 (319)
15 PRK15370 E3 ubiquitin-protein 99.8 4.3E-19 9.3E-24 171.3 12.5 203 107-335 178-380 (754)
16 cd00116 LRR_RI Leucine-rich re 99.8 8.9E-21 1.9E-25 169.0 -0.5 250 87-336 3-292 (319)
17 KOG0618 Serine/threonine phosp 99.8 7.4E-21 1.6E-25 178.7 -2.6 240 83-333 220-487 (1081)
18 KOG0618 Serine/threonine phosp 99.8 2.6E-20 5.7E-25 175.1 -3.1 222 105-335 217-465 (1081)
19 KOG0617 Ras suppressor protein 99.7 1.7E-20 3.7E-25 144.0 -4.7 165 103-296 29-194 (264)
20 PRK15387 E3 ubiquitin-protein 99.7 4.1E-17 8.8E-22 157.0 15.8 216 84-335 203-435 (788)
21 KOG4237 Extracellular matrix p 99.7 1.4E-19 3.1E-24 155.6 -4.7 228 108-336 68-336 (498)
22 KOG0617 Ras suppressor protein 99.7 4E-19 8.6E-24 136.5 -2.5 180 82-268 33-217 (264)
23 PLN03150 hypothetical protein; 99.6 3.8E-15 8.3E-20 143.1 13.8 155 29-191 367-527 (623)
24 COG4886 Leucine-rich repeat (L 99.4 2.7E-13 5.9E-18 124.4 8.3 194 135-337 97-292 (394)
25 KOG1909 Ran GTPase-activating 99.4 2.4E-14 5.2E-19 121.9 -1.5 242 82-334 30-310 (382)
26 COG4886 Leucine-rich repeat (L 99.3 1.1E-12 2.4E-17 120.4 5.6 194 111-313 97-292 (394)
27 KOG0532 Leucine-rich repeat (L 99.3 4.6E-14 1E-18 127.2 -4.1 174 129-311 73-247 (722)
28 PLN03150 hypothetical protein; 99.3 5.4E-12 1.2E-16 121.5 8.9 112 228-339 420-532 (623)
29 KOG1259 Nischarin, modulator o 99.3 5.6E-13 1.2E-17 111.6 0.8 132 200-337 281-414 (490)
30 KOG3207 Beta-tubulin folding c 99.3 1.9E-13 4E-18 119.7 -2.5 206 129-335 119-339 (505)
31 KOG0532 Leucine-rich repeat (L 99.3 2.4E-13 5.2E-18 122.6 -2.6 170 109-287 77-247 (722)
32 KOG1909 Ran GTPase-activating 99.2 3.1E-12 6.6E-17 109.2 0.2 210 82-310 58-310 (382)
33 PF14580 LRR_9: Leucine-rich r 99.2 2.4E-11 5.2E-16 97.0 4.8 102 226-329 42-147 (175)
34 KOG3207 Beta-tubulin folding c 99.1 5.2E-12 1.1E-16 110.8 -0.3 183 152-335 118-314 (505)
35 KOG4658 Apoptotic ATPase [Sign 99.1 3.2E-11 6.9E-16 119.0 2.2 86 103-189 567-652 (889)
36 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 93.4 4.3 106 226-336 19-127 (175)
37 KOG1259 Nischarin, modulator o 99.0 3.6E-11 7.8E-16 100.9 0.6 205 100-313 207-414 (490)
38 PF13855 LRR_8: Leucine rich r 99.0 1.7E-10 3.8E-15 75.9 3.4 61 274-334 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 99.0 2.5E-10 5.4E-15 112.8 3.4 128 83-214 524-653 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 5.6E-10 1.2E-14 73.4 2.9 61 250-310 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.9 2.7E-10 5.8E-15 105.1 -0.1 223 102-336 90-319 (414)
42 KOG2120 SCF ubiquitin ligase, 98.9 2.2E-11 4.8E-16 102.0 -6.9 194 131-326 185-391 (419)
43 KOG0531 Protein phosphatase 1, 98.8 3.3E-10 7.1E-15 104.5 -1.2 218 105-335 70-290 (414)
44 COG5238 RNA1 Ran GTPase-activa 98.7 2.3E-09 5E-14 89.0 -0.8 242 82-335 30-316 (388)
45 KOG2982 Uncharacterized conser 98.6 5.9E-09 1.3E-13 87.7 -0.2 222 107-328 45-285 (418)
46 KOG1859 Leucine-rich repeat pr 98.6 5.1E-09 1.1E-13 97.7 -1.9 156 172-335 102-267 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.5 8.2E-10 1.8E-14 92.7 -7.7 175 156-332 186-373 (419)
48 KOG2982 Uncharacterized conser 98.5 3.2E-08 6.9E-13 83.4 0.4 210 129-338 43-265 (418)
49 PF08263 LRRNT_2: Leucine rich 98.5 3E-07 6.4E-12 55.4 4.3 42 33-79 2-43 (43)
50 KOG1859 Leucine-rich repeat pr 98.4 3.4E-09 7.4E-14 98.9 -6.8 178 100-287 102-292 (1096)
51 KOG4579 Leucine-rich repeat (L 98.4 7.6E-09 1.7E-13 77.2 -4.1 128 205-336 29-160 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.4 7.2E-08 1.6E-12 80.3 1.1 191 101-311 86-316 (388)
53 PF12799 LRR_4: Leucine Rich r 98.1 2E-06 4.3E-11 51.9 2.9 37 274-311 1-37 (44)
54 KOG4579 Leucine-rich repeat (L 98.1 2.7E-07 5.9E-12 69.1 -2.4 88 82-173 53-140 (177)
55 PF12799 LRR_4: Leucine Rich r 98.0 7.6E-06 1.6E-10 49.4 3.6 36 251-287 2-37 (44)
56 PRK15386 type III secretion pr 98.0 2.4E-05 5.1E-10 70.5 7.7 138 103-261 48-188 (426)
57 KOG1644 U2-associated snRNP A' 98.0 1.6E-05 3.6E-10 63.6 5.5 103 226-330 42-148 (233)
58 PRK15386 type III secretion pr 97.9 4.4E-05 9.4E-10 68.8 8.5 136 127-284 48-187 (426)
59 KOG3665 ZYG-1-like serine/thre 97.9 4.9E-06 1.1E-10 80.8 1.2 133 179-313 122-265 (699)
60 KOG1644 U2-associated snRNP A' 97.7 6.5E-05 1.4E-09 60.2 5.5 103 108-212 43-149 (233)
61 PF13306 LRR_5: Leucine rich r 97.5 0.00046 1E-08 52.4 7.2 14 198-211 76-89 (129)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00052 1.1E-08 52.2 6.9 94 226-324 35-128 (129)
63 KOG2123 Uncharacterized conser 97.4 4.2E-06 9.1E-11 70.2 -5.1 102 78-185 15-123 (388)
64 KOG2123 Uncharacterized conser 97.4 1.1E-05 2.4E-10 67.8 -3.3 99 226-328 19-123 (388)
65 KOG3665 ZYG-1-like serine/thre 97.3 0.00013 2.8E-09 71.1 2.0 135 82-218 122-265 (699)
66 KOG4341 F-box protein containi 97.2 8.9E-06 1.9E-10 71.9 -5.8 251 82-332 138-436 (483)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00049 1.1E-08 57.5 2.4 102 226-329 43-150 (260)
68 KOG2739 Leucine-rich acidic nu 96.8 0.00081 1.8E-08 56.2 2.8 86 104-193 40-130 (260)
69 KOG1947 Leucine rich repeat pr 96.6 0.00015 3.3E-09 68.2 -3.9 17 270-286 358-374 (482)
70 KOG1947 Leucine rich repeat pr 96.5 0.00018 3.9E-09 67.8 -3.7 111 105-215 186-307 (482)
71 PF00560 LRR_1: Leucine Rich R 95.7 0.0046 1E-07 31.0 0.7 18 300-318 2-19 (22)
72 KOG4308 LRR-containing protein 95.6 5.6E-05 1.2E-09 70.4 -11.3 180 132-311 88-303 (478)
73 KOG4341 F-box protein containi 95.5 0.00066 1.4E-08 60.4 -4.5 228 108-335 139-414 (483)
74 PF00560 LRR_1: Leucine Rich R 95.4 0.0058 1.3E-07 30.6 0.5 17 133-150 2-18 (22)
75 KOG4308 LRR-containing protein 94.5 0.00012 2.6E-09 68.3 -12.7 181 84-264 89-304 (478)
76 KOG3864 Uncharacterized conser 94.4 0.0056 1.2E-07 49.4 -1.7 84 226-309 101-187 (221)
77 KOG3864 Uncharacterized conser 93.4 0.013 2.8E-07 47.3 -1.3 80 204-283 102-185 (221)
78 KOG0473 Leucine-rich repeat pr 93.4 0.0015 3.3E-08 53.8 -6.6 84 81-168 41-124 (326)
79 PF13504 LRR_7: Leucine rich r 93.0 0.061 1.3E-06 24.9 1.1 11 133-143 3-13 (17)
80 KOG0473 Leucine-rich repeat pr 91.5 0.005 1.1E-07 50.9 -5.9 85 248-335 40-124 (326)
81 PF13516 LRR_6: Leucine Rich r 89.5 0.12 2.7E-06 26.2 0.2 14 275-288 3-16 (24)
82 smart00369 LRR_TYP Leucine-ric 89.1 0.36 7.8E-06 25.0 1.9 13 299-311 3-15 (26)
83 smart00370 LRR Leucine-rich re 89.1 0.36 7.8E-06 25.0 1.9 13 299-311 3-15 (26)
84 smart00365 LRR_SD22 Leucine-ri 78.9 1.8 3.8E-05 22.6 1.7 14 322-335 2-15 (26)
85 smart00368 LRR_RI Leucine rich 78.3 1.4 3.1E-05 23.3 1.3 14 322-335 2-15 (28)
86 smart00364 LRR_BAC Leucine-ric 74.6 2.2 4.8E-05 22.2 1.3 17 298-315 2-18 (26)
87 KOG3763 mRNA export factor TAP 71.6 2.2 4.7E-05 40.2 1.5 65 248-312 216-284 (585)
88 KOG3763 mRNA export factor TAP 71.5 2.4 5.2E-05 39.9 1.7 77 226-304 218-307 (585)
89 smart00367 LRR_CC Leucine-rich 53.3 9.3 0.0002 19.5 1.3 12 298-309 2-13 (26)
90 KOG4242 Predicted myosin-I-bin 46.3 21 0.00046 33.3 3.1 13 156-168 166-178 (553)
91 PF11119 DUF2633: Protein of u 36.3 69 0.0015 20.4 3.4 22 1-22 1-22 (59)
92 KOG1665 AFH1-interacting prote 36.3 43 0.00093 27.9 3.1 9 205-213 218-226 (302)
93 KOG4242 Predicted myosin-I-bin 29.5 45 0.00097 31.2 2.5 23 177-199 163-185 (553)
94 TIGR00864 PCC polycystin catio 26.7 39 0.00086 38.7 1.9 33 256-288 1-33 (2740)
95 TIGR00864 PCC polycystin catio 21.0 71 0.0015 36.9 2.5 34 232-265 1-34 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-40 Score=335.73 Aligned_cols=300 Identities=35% Similarity=0.578 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHHhcccCCCCcCCCcccCCCCCCCCCCCCcccceEeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCC
Q 036674 31 ESNEEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLA 110 (339)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~ 110 (339)
...+|..+|++|++.+ .++...+.+| +. ..++|.|.|+.|+..++|+.|+++++++.+.+ +..+..+++|+
T Consensus 26 ~~~~~~~~l~~~~~~~-~~~~~~~~~w--~~-----~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~-~~~~~~l~~L~ 96 (968)
T PLN00113 26 LHAEELELLLSFKSSI-NDPLKYLSNW--NS-----SADVCLWQGITCNNSSRVVSIDLSGKNISGKI-SSAIFRLPYIQ 96 (968)
T ss_pred CCHHHHHHHHHHHHhC-CCCcccCCCC--CC-----CCCCCcCcceecCCCCcEEEEEecCCCccccC-ChHHhCCCCCC
Confidence 3568999999999998 4666677889 33 56899999999987789999999999999887 77888999999
Q ss_pred EEeCCCCcCCCCCCccCC-CCCccCeeeccCCCCcCcCc----------------------hhhcCCCCCcEEEeeccCC
Q 036674 111 YLDLSHNELFGTIPPQIS-NLTNLSDLYLEGDQFSGNIP----------------------PEVGLMSHLKFLYIDTNQL 167 (339)
Q Consensus 111 ~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p----------------------~~l~~l~~L~~L~l~~n~~ 167 (339)
+|++++|.+.+.+|..+. .+++|++|++++|.+.+.+| ..++.+++|++|++++|.+
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 999999998877776544 77777777777776654444 4444444455555544444
Q ss_pred CCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhh
Q 036674 168 DGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNV 246 (339)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~ 246 (339)
.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+.. ++|++|++++|.+++..|..+
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 4444444445555555555555544444444555555555555555555444444444 555555555555555555555
Q ss_pred cCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCe
Q 036674 247 CRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGT 326 (339)
Q Consensus 247 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 326 (339)
..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.++..+++|++|++++|.+++.+|..+..+++|+.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 55555555555555555555555555556666666666655555555556666666666666666556666666666666
Q ss_pred EEcccCcCcccCC
Q 036674 327 LNVSMNNITGGIP 339 (339)
Q Consensus 327 L~l~~n~lt~~ip 339 (339)
|++++|.++|.+|
T Consensus 337 L~L~~n~l~~~~p 349 (968)
T PLN00113 337 LQLWSNKFSGEIP 349 (968)
T ss_pred EECcCCCCcCcCC
Confidence 6666666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-32 Score=276.98 Aligned_cols=255 Identities=37% Similarity=0.578 Sum_probs=162.2
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.+++++|++.+.++ ...+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 467778888877776552 24566677777777766666666666777777777777766666666666666777777
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTS 240 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~ 240 (339)
+++|.+.+.+|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+.. ++|++|++++|.+.+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 7666666666666666666666666666666666666666666666666666666666655555 666666666666665
Q ss_pred CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccC
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGE 320 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 320 (339)
..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..++.
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 55666666666666666666665555555555666666666666655555555555555555665555555555555555
Q ss_pred CCCCCeEEcccCcCcccCC
Q 036674 321 YPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 321 l~~L~~L~l~~n~lt~~ip 339 (339)
+++|+.|++++|+++|.+|
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CCCCcEEECCCCeeEeeCC
Confidence 5555555555555555443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.3e-28 Score=218.48 Aligned_cols=254 Identities=19% Similarity=0.196 Sum_probs=151.9
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEE
Q 036674 81 VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFL 160 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (339)
.++++.++|.+|-++..- ...++.++.|+.|||+.|.++...-..|..-.++++|+|++|+|+..-...|..+.+|-+|
T Consensus 124 sghl~~L~L~~N~I~sv~-se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVT-SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeecccccccc-HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 357888888777665443 4455556666666666666553333345555556666666666654444455555555555
Q ss_pred EeeccCCCCCCCccccCCCCCcEEEeecCcCC------------------------CCCCCCCCCCCCCceeecccccCc
Q 036674 161 YIDTNQLDGSIPPEVGQLSSLVELFLFFNHLS------------------------GSVPPSLGNLTNLQELILFCNNLS 216 (339)
Q Consensus 161 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~------------------------~~~~~~l~~l~~L~~L~l~~n~l~ 216 (339)
.+++|+++...+..|.++++|+.|++..|.+. ......|..+.++++|++..|++.
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 55555555333334555555555555555543 333344445555555666655555
Q ss_pred ccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcC
Q 036674 217 GSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALG 295 (339)
Q Consensus 217 ~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 295 (339)
..-...+.. ++|+.|++++|.+...-++.+..+++|+.|+|+.|+++...+..|..+..|++|++++|.+......+|.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 333333333 6666666666666666666666666677777777766666666666666677777777766655555666
Q ss_pred CCCCCCEeecccccCcccC---CccccCCCCCCeEEcccCcCc
Q 036674 296 IYPNLNYIDLSRNNFYGEI---SSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 296 ~~~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l~~n~lt 335 (339)
.+++|+.|||++|.++..+ ...|.++++|+.|++.||++.
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 6777777777777776543 234566777777777777763
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=8e-28 Score=215.02 Aligned_cols=251 Identities=19% Similarity=0.163 Sum_probs=189.9
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe-
Q 036674 84 VVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI- 162 (339)
Q Consensus 84 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l- 162 (339)
++.+||+.|.+.... .+.|..=.++++|+|++|+|+..-...|..+.+|..|.|++|+++..-+..|+++++|+.|++
T Consensus 151 lrslDLSrN~is~i~-~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIP-KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhchhhccc-CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 445555555544322 344444445555555555555444444555555555555555555222224444555555554
Q ss_pred -----------------------eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccC
Q 036674 163 -----------------------DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSI 219 (339)
Q Consensus 163 -----------------------~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 219 (339)
..|.+...-...|..+.++++|+++.|+++..-..++.+++.|+.|+++.|.+....
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 445554444456778889999999999998777788899999999999999999888
Q ss_pred CCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccc---hhcC
Q 036674 220 PPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNIS---EALG 295 (339)
Q Consensus 220 ~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~ 295 (339)
++.+.. ++|++|+|+.|+++...+..|..+..|++|.|++|.+.......|..+.+|++||+++|.+...+. ..+.
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 888887 999999999999999999999999999999999999997777889999999999999998876543 4567
Q ss_pred CCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 296 IYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 296 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
+++.|+.|++.+|++......+|.+++.|+.|||.+|.|-
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 7999999999999999666678999999999999999874
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=9e-26 Score=203.67 Aligned_cols=242 Identities=26% Similarity=0.356 Sum_probs=169.7
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCc-cCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPP-QISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.++.|||+.|.++.. |..+...+++-+|+|++|+|. .+|. .|-+++.|-+|||++|++. .+|+.+..+..|++|.
T Consensus 104 dLt~lDLShNqL~Ev--P~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREV--PTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cceeeecchhhhhhc--chhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 466677777766543 445666667777777777776 3443 3556777777777777776 6777777777777777
Q ss_pred eeccCCC-------------------------CCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCc
Q 036674 162 IDTNQLD-------------------------GSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLS 216 (339)
Q Consensus 162 l~~n~~~-------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 216 (339)
+++|.+. .-+|.++..+.+|..++++.|.+. ..|+.+.++++|+.|++++|.++
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 7776543 124445555556666666666665 56666666667777777777666
Q ss_pred ccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCC-CchHhhhcCCCCcEEEccccccccccchhc
Q 036674 217 GSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQG-TIPKSLRNCTSLIRVRVNGNNLTGNISEAL 294 (339)
Q Consensus 217 ~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 294 (339)
.+...... .+|++|+++.|+++. +|..++.++.|+.|.+.+|+++- -+|+.++.+.+|+.+..++|.+. .+|+.+
T Consensus 259 -eL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl 335 (1255)
T KOG0444|consen 259 -ELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL 335 (1255)
T ss_pred -eeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh
Confidence 33333333 667777777777765 77777778888888887777763 36777888888888888888776 778888
Q ss_pred CCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCc
Q 036674 295 GIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNN 333 (339)
Q Consensus 295 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 333 (339)
..++.|+.|.|+.|++. .+|+.+.-++.|+.||+++|+
T Consensus 336 cRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 88888888888888887 778888888888999998884
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.3e-25 Score=201.09 Aligned_cols=248 Identities=27% Similarity=0.376 Sum_probs=179.8
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchh-hcCCCCCcE
Q 036674 81 VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPE-VGLMSHLKF 159 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~ 159 (339)
.++++.+.+..|++....-|+.+.++..|+.|||++|++. +.|..+...+++-.|+|++|+|. .+|.. +-+++.|-+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 3456777777787754433677888889999999999887 78888888888999999999888 66654 467888888
Q ss_pred EEeeccCCCCCCCccccCCCCCcEEEeecCcCCC-------------------------CCCCCCCCCCCCceeeccccc
Q 036674 160 LYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSG-------------------------SVPPSLGNLTNLQELILFCNN 214 (339)
Q Consensus 160 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------------------------~~~~~l~~l~~L~~L~l~~n~ 214 (339)
||+++|++. .+|..+..+..|++|.+++|++.. .+|.++..+.+|..++++.|.
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 999999887 777778888888888888886532 234445555566666666666
Q ss_pred CcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccccccc-ccch
Q 036674 215 LSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTG-NISE 292 (339)
Q Consensus 215 l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~ 292 (339)
+. ..|..+.. ++|+.|++++|+++. +......+.+|++|+++.|+++ .+|.++..++.|+.|.+.+|+++- -+|.
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 65 55665555 667777777777665 4444555666777777777776 667777777777777777776552 3466
Q ss_pred hcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 293 ALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 293 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
.++++.+|+.+..++|.+. .+|+.++.|++|+.|.|+.|++.
T Consensus 311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 6777777777777777776 67777778888888888877653
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.4e-24 Score=186.48 Aligned_cols=239 Identities=26% Similarity=0.386 Sum_probs=180.2
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEee
Q 036674 84 VVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163 (339)
Q Consensus 84 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 163 (339)
++.+++.++++... +++++.+..+..++.++|.+. .+|..+..+..|+.+++++|.+. .+|+.++.+..|+.++..
T Consensus 70 l~vl~~~~n~l~~l--p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQL--PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred eeEEEeccchhhhC--CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 56666666666532 456666666777777777665 66666777777777777777766 666677777777777777
Q ss_pred ccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCC
Q 036674 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYL 242 (339)
Q Consensus 164 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~ 242 (339)
+|++. ..|..+.++.++..+++.+|.+. ..|...-+++.|++++...|.++ .+|..++. .+|+.|++..|++.. +
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-l 221 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-L 221 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-C
Confidence 77776 66666777777777777777776 34444444788888888888776 67777777 888888888888865 5
Q ss_pred chhhcCCCccceeeccccccCCCchHhh-hcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCC
Q 036674 243 PHNVCRGGALQNFTVAENHFQGTIPKSL-RNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEY 321 (339)
Q Consensus 243 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l 321 (339)
| .|.++..|.+++++.|++. .+|... .+++++..||+.+|+++ ..|+.+..+.+|++||+++|.++ ..|..++++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 5 7788888999999998887 455444 58899999999999998 77888888899999999999998 678889999
Q ss_pred CCCCeEEcccCcCc
Q 036674 322 PKLGTLNVSMNNIT 335 (339)
Q Consensus 322 ~~L~~L~l~~n~lt 335 (339)
.|+.|-+.||++.
T Consensus 298 -hL~~L~leGNPlr 310 (565)
T KOG0472|consen 298 -HLKFLALEGNPLR 310 (565)
T ss_pred -eeeehhhcCCchH
Confidence 9999999999863
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=7.3e-25 Score=188.23 Aligned_cols=244 Identities=24% Similarity=0.348 Sum_probs=218.0
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEee
Q 036674 84 VVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163 (339)
Q Consensus 84 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 163 (339)
+..+.++.|.+... ...+.++..+.++++++|.+. ..|++++.+..++.++.++|++. .+|+.++.+.+|+.++++
T Consensus 47 l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhhc--cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 56677788877643 467889999999999999997 78888999999999999999999 899999999999999999
Q ss_pred ccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCc
Q 036674 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLP 243 (339)
Q Consensus 164 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 243 (339)
.|.+. .+|.+++.+..+..++..+|++. ..|..+..+.+|..+++.+|.+....|..+..+.|++++...|-++. +|
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~t-lP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLET-LP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhc-CC
Confidence 99998 88889999999999999999998 78999999999999999999998555555555999999999888865 89
Q ss_pred hhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCC
Q 036674 244 HNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPK 323 (339)
Q Consensus 244 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 323 (339)
+.++.+.+|.-|++..|++. ++| .|..|..|++++++.|++.-...+....++++..||+..|+++ .+|..+.-+.+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 99999999999999999998 777 6899999999999999998444455558999999999999999 88998999999
Q ss_pred CCeEEcccCcCccc
Q 036674 324 LGTLNVSMNNITGG 337 (339)
Q Consensus 324 L~~L~l~~n~lt~~ 337 (339)
|..||+++|.+++-
T Consensus 277 L~rLDlSNN~is~L 290 (565)
T KOG0472|consen 277 LERLDLSNNDISSL 290 (565)
T ss_pred hhhhcccCCccccC
Confidence 99999999999863
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.6e-19 Score=183.14 Aligned_cols=236 Identities=23% Similarity=0.244 Sum_probs=112.4
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.|+++++.+.. + +..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++
T Consensus 612 ~L~~L~L~~s~l~~-L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGSKLEK-L-WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred CCcEEECcCccccc-c-ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 34444554444432 2 23345555566666655543334443 555566666666655444455555566666666666
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-----------------
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN----------------- 225 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----------------- 225 (339)
++|.....+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+..
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhcc
Confidence 6554333455433 4555555555555433333321 234444555554443 22221110
Q ss_pred --------------CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccc
Q 036674 226 --------------PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNIS 291 (339)
Q Consensus 226 --------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 291 (339)
++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|++|++++|......|
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 345556666655555566666666666666666654333444333 34444444444432222222
Q ss_pred hhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEccc
Q 036674 292 EALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSM 331 (339)
Q Consensus 292 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 331 (339)
.. ..+|++|+|++|.+. .+|..+..+++|+.|++++
T Consensus 843 ~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 843 DI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred cc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 11 123444444444443 3444444455555555554
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=1.6e-19 Score=173.52 Aligned_cols=223 Identities=26% Similarity=0.310 Sum_probs=137.9
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.|++.+|+++.. +. ..++|++|++++|.++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|++
T Consensus 223 ~L~~L~L~~N~Lt~L--P~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLTSL--PA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCCCC--CC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence 566777777776642 11 2467777777777776 34432 245666666666555 33332 134555555
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCC-----------------CCCCCceeecccccCcccCCCCCCC
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLG-----------------NLTNLQELILFCNNLSGSIPPSLDN 225 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~ 225 (339)
++|+++ .+|. ..++|+.|++++|.+.+ +|.... ...+|+.|++++|+++ .+|...
T Consensus 290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp-- 361 (788)
T PRK15387 290 FGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLP-- 361 (788)
T ss_pred cCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCC--
Confidence 555554 3333 12456666666665553 222110 0124566666666665 333321
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeec
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDL 305 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 305 (339)
.+|+.|++++|+++. +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+++ +|.. +.+|+.|++
T Consensus 362 ~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~L 429 (788)
T PRK15387 362 SELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSV 429 (788)
T ss_pred cccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhh
Confidence 455666666666654 3432 2467888888888874 4432 3678888999988874 4543 357888999
Q ss_pred ccccCcccCCccccCCCCCCeEEcccCcCcccCC
Q 036674 306 SRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 306 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
++|+++ .+|..+.++++|+.|++++|+|+|.+|
T Consensus 430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 430 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 999998 788889999999999999999998754
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=2.4e-18 Score=176.19 Aligned_cols=239 Identities=19% Similarity=0.224 Sum_probs=157.9
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEee
Q 036674 84 VVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163 (339)
Q Consensus 84 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 163 (339)
++.+++.++.+.. + |..+ .+.+|+.|++.++.+. .++..+..+++|+.|+++++.....+| .+..+++|++|+++
T Consensus 591 Lr~L~~~~~~l~~-l-P~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLRC-M-PSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCCC-C-CCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 4555555544432 2 2223 4567888888888776 566667778888888888766444555 46677888888888
Q ss_pred ccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCc
Q 036674 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLP 243 (339)
Q Consensus 164 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 243 (339)
+|.....+|..+.++++|+.|++++|.....+|..+ ++++|+.|++++|.....+|... .+|++|++++|.+.. +|
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~~-lP 741 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEE-FP 741 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCcccc-cc
Confidence 876666778888888888888888776555666655 67788888888876554555332 578888888887654 33
Q ss_pred hhh------------------------------cCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchh
Q 036674 244 HNV------------------------------CRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEA 293 (339)
Q Consensus 244 ~~~------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 293 (339)
..+ ...++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 321 11245666677766666667777777777777777776544455554
Q ss_pred cCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 294 LGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 294 l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
+ .+++|++|++++|.....+|.. ..+|+.|++++|.++
T Consensus 822 ~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 822 I-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE 859 (1153)
T ss_pred C-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc
Confidence 4 5677777777776654444432 356777788877775
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.2e-19 Score=173.29 Aligned_cols=226 Identities=27% Similarity=0.414 Sum_probs=116.5
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcC----------
Q 036674 84 VVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGL---------- 153 (339)
Q Consensus 84 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~---------- 153 (339)
.+.+++++++++.. |..+ .++|+.|++++|.++ .+|..+. ++|++|++++|.+. .+|..+..
T Consensus 180 ~~~L~L~~~~LtsL--P~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLTTI--PACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcCcC--Cccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCC
Confidence 45555555555432 1112 134555555555554 3333222 34555555555554 34433311
Q ss_pred ---------CCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCC
Q 036674 154 ---------MSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD 224 (339)
Q Consensus 154 ---------l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 224 (339)
..+|++|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. .+|+.|++++|.++ .+|..+.
T Consensus 252 ~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~ 324 (754)
T PRK15370 252 RITELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETLP 324 (754)
T ss_pred ccCcCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcccc
Confidence 124444555444444 3333322 24555555555444 2332221 24455555555554 2332221
Q ss_pred CCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEee
Q 036674 225 NPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYID 304 (339)
Q Consensus 225 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 304 (339)
++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++. +|..+. ..|+.|+
T Consensus 325 -~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~Ld 394 (754)
T PRK15370 325 -PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQ 394 (754)
T ss_pred -ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHh
Confidence 466667777776665 444332 56777777777776 3454442 567777777777763 344332 3577777
Q ss_pred cccccCcccCCcc----ccCCCCCCeEEcccCcCc
Q 036674 305 LSRNNFYGEISSN----LGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 305 L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~lt 335 (339)
+++|++. .+|.. +..++.+..|++.+|+++
T Consensus 395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 7777776 34433 334577788888888875
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=4e-21 Score=165.03 Aligned_cols=252 Identities=21% Similarity=0.231 Sum_probs=198.5
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccC-CCCcCcCc-hhhcCCCCCcE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEG-DQFSGNIP-PEVGLMSHLKF 159 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p-~~l~~l~~L~~ 159 (339)
...++|+|..|.++... +.+|+.+++|+.|||+.|.|+..-|++|.+++.|..|-+.+ |+|+ .+| ..|+++..|+.
T Consensus 67 ~~tveirLdqN~I~~iP-~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIP-PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCC-hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 36799999999998554 88999999999999999999988899999999999887666 8898 555 47899999999
Q ss_pred EEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcc------------cCCCCCCC--
Q 036674 160 LYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSG------------SIPPSLDN-- 225 (339)
Q Consensus 160 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~~~~-- 225 (339)
|.+.-|++.....+.|..+++|..|.+.+|.+...--..+..+..++.+.+..|.+.. ..|-.++.
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 9999999987888899999999999999999874333478888888888877766221 01111100
Q ss_pred ------------------C---CCcEE--eC-CCCCCCCCCc-hhhcCCCccceeeccccccCCCchHhhhcCCCCcEEE
Q 036674 226 ------------------P---MLTRL--DL-DFNHFTSYLP-HNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVR 280 (339)
Q Consensus 226 ------------------~---~L~~L--~l-~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 280 (339)
+ .++.+ .+ +.+...+..| ..|..+++|+.|++++|.++..-+.+|.....+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 0 01111 11 1111222222 4577889999999999999988888999999999999
Q ss_pred ccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 281 VNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 281 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
+.+|++...-...|.++..|+.|+|.+|+++...|..|..+.+|..|++-.|++-
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999998777778888999999999999999888888888899999999888774
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=2.4e-21 Score=172.61 Aligned_cols=251 Identities=23% Similarity=0.255 Sum_probs=166.6
Q ss_pred CEEEEEcCCCCCccc----cCCCCCCCCCCCCEEeCCCCcCCC------CCCccCCCCCccCeeeccCCCCcCcCchhhc
Q 036674 83 RVVNISLPAKGLKGK----LHDFSFSSFPHLAYLDLSHNELFG------TIPPQISNLTNLSDLYLEGDQFSGNIPPEVG 152 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 152 (339)
.++.++++++.++.. + ...+...++++.++++++.+.+ .++..+..+++|++|++++|.+.+..+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i-~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKAL-ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHH-HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 478888888887432 2 3345667778888888877652 2344566788888888888888755555555
Q ss_pred CCCC---CcEEEeeccCCCC----CCCccccCC-CCCcEEEeecCcCCCC----CCCCCCCCCCCceeecccccCcccC-
Q 036674 153 LMSH---LKFLYIDTNQLDG----SIPPEVGQL-SSLVELFLFFNHLSGS----VPPSLGNLTNLQELILFCNNLSGSI- 219 (339)
Q Consensus 153 ~l~~---L~~L~l~~n~~~~----~~p~~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~- 219 (339)
.+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 5544 8888888887763 222344566 7888888888887742 2234556677888888888777422
Q ss_pred ---CCCCCC-CCCcEEeCCCCCCCCC----CchhhcCCCccceeeccccccCCCchHhhh-----cCCCCcEEEcccccc
Q 036674 220 ---PPSLDN-PMLTRLDLDFNHFTSY----LPHNVCRGGALQNFTVAENHFQGTIPKSLR-----NCTSLIRVRVNGNNL 286 (339)
Q Consensus 220 ---~~~~~~-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l 286 (339)
+..+.. ++|++|++++|.+++. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 112222 5788888888887643 234455677888888888887753333222 136888888888887
Q ss_pred cc----ccchhcCCCCCCCEeecccccCccc----CCccccCC-CCCCeEEcccCcC
Q 036674 287 TG----NISEALGIYPNLNYIDLSRNNFYGE----ISSNLGEY-PKLGTLNVSMNNI 334 (339)
Q Consensus 287 ~~----~~~~~l~~~~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l 334 (339)
++ .+...+..+++|+++++++|.++.. ....+... +.|+.+++.+|++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 62 2334455567888888888888743 34444445 6788888887764
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.3e-19 Score=171.30 Aligned_cols=203 Identities=30% Similarity=0.483 Sum_probs=139.6
Q ss_pred CCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEe
Q 036674 107 PHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 186 (339)
.+.+.|+++++.++ .+|..+. +.|+.|++++|++. .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 46789999999987 5676554 58999999999999 7887664 69999999999998 6676553 47999999
Q ss_pred ecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCc
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTI 266 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 266 (339)
++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++. +
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 999987 5666554 47899999999888 5665543 578999999998876 443332 356666777776663 3
Q ss_pred hHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 267 PKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 267 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
|..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|+++ .+|..+ .++|+.|++++|+++
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 3322 2456666666666653 34333 246666666666665 344333 245666666666555
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=8.9e-21 Score=168.97 Aligned_cols=250 Identities=23% Similarity=0.209 Sum_probs=185.8
Q ss_pred EEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCC----CCccCCCCCccCeeeccCCCCcC------cCchhhcCCCC
Q 036674 87 ISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGT----IPPQISNLTNLSDLYLEGDQFSG------NIPPEVGLMSH 156 (339)
Q Consensus 87 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~ 156 (339)
|+|..+.+.+......+..+.+|++++++++.+++. ++..+...+.+++++++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 556666665333234566777899999999998542 55567788889999999988762 23456777899
Q ss_pred CcEEEeeccCCCCCCCccccCCCC---CcEEEeecCcCCCC----CCCCCCCC-CCCceeecccccCcccCC----CCCC
Q 036674 157 LKFLYIDTNQLDGSIPPEVGQLSS---LVELFLFFNHLSGS----VPPSLGNL-TNLQELILFCNNLSGSIP----PSLD 224 (339)
Q Consensus 157 L~~L~l~~n~~~~~~p~~~~~l~~---L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~~----~~~~ 224 (339)
|++|++++|.+.+..+..+..+.+ |++|++++|.+.+. +...+..+ ++|++|++++|.+++... ..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 999999999997666666655555 99999999998732 22344566 899999999999884322 2233
Q ss_pred C-CCCcEEeCCCCCCCCC----CchhhcCCCccceeeccccccCCC----chHhhhcCCCCcEEEccccccccccchhcC
Q 036674 225 N-PMLTRLDLDFNHFTSY----LPHNVCRGGALQNFTVAENHFQGT----IPKSLRNCTSLIRVRVNGNNLTGNISEALG 295 (339)
Q Consensus 225 ~-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 295 (339)
. ++|++|++++|.+++. ++..+...++|++|++++|.+++. +...+..+++|++|++++|.+++.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 3 6899999999999853 233455667999999999998754 344566789999999999998863333322
Q ss_pred -----CCCCCCEeecccccCcc----cCCccccCCCCCCeEEcccCcCcc
Q 036674 296 -----IYPNLNYIDLSRNNFYG----EISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 296 -----~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
..+.|++|++++|.+++ .+...+..+++|+.+++++|.++.
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 24799999999999972 334556677999999999999874
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=7.4e-21 Score=178.75 Aligned_cols=240 Identities=30% Similarity=0.400 Sum_probs=177.1
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.+..+.|.++... .-..-.+|++++++.|.+. .+|.-++.+.+|+.+++.+|.+. .+|..+....+|++|.+
T Consensus 220 ~l~~L~a~~n~l~~~~---~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLD---VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred chheeeeccCcceeec---cccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 4555666666655221 2223346788888888877 55677778888888888888886 77777777778888888
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCC--------------------------CCCCCCceeecccccCc
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSL--------------------------GNLTNLQELILFCNNLS 216 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l--------------------------~~l~~L~~L~l~~n~l~ 216 (339)
..|.+. .+|....+++.|++|++..|.+. .+|+.+ ..++.|+.|++.+|.++
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 887776 55666667778888888777765 333221 12345778888888888
Q ss_pred ccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcC
Q 036674 217 GSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALG 295 (339)
Q Consensus 217 ~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 295 (339)
+..-..+.. ++|+.|+|++|++.......+.++..|++|++++|.++ .+|..+..++.|++|...+|++. ..| .+.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh
Confidence 766555555 88999999999888777777888888899999999888 67788888888999988888888 555 567
Q ss_pred CCCCCCEeecccccCccc-CCccccCCCCCCeEEcccCc
Q 036674 296 IYPNLNYIDLSRNNFYGE-ISSNLGEYPKLGTLNVSMNN 333 (339)
Q Consensus 296 ~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~ 333 (339)
.++.|+.+|++.|+++.. +|... ..|+|+.||++||.
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 889999999999998743 33322 33889999999986
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=2.6e-20 Score=175.06 Aligned_cols=222 Identities=27% Similarity=0.382 Sum_probs=191.1
Q ss_pred CCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEE
Q 036674 105 SFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVEL 184 (339)
Q Consensus 105 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 184 (339)
.-++++.|+.++|.+....+ -..-.+|++++++.|+++ .+|..++.+.+|+.++..+|.++ .+|..+...++|+.|
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred cCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 34678999999998872222 223468999999999999 78899999999999999999997 889999999999999
Q ss_pred EeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCC------------------------CC---CCCcEEeCCCCC
Q 036674 185 FLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSL------------------------DN---PMLTRLDLDFNH 237 (339)
Q Consensus 185 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~------------------------~~---~~L~~L~l~~n~ 237 (339)
.+.+|.+. .+|.....++.|++|++..|++. .+|..+ .. +.|+.|++.+|.
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence 99999998 67888888999999999999876 333211 11 467888889999
Q ss_pred CCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCcc
Q 036674 238 FTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSN 317 (339)
Q Consensus 238 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 317 (339)
+++..-..+.+.++|+.|+|++|++.......+.+++.|++|++++|+++ .+|+.+..++.|++|...+|++. ..| .
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence 99888888899999999999999999777777899999999999999999 67788999999999999999998 667 6
Q ss_pred ccCCCCCCeEEcccCcCc
Q 036674 318 LGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 318 l~~l~~L~~L~l~~n~lt 335 (339)
+..++.|+.+|++.|+++
T Consensus 448 ~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hhhcCcceEEecccchhh
Confidence 899999999999999886
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.7e-20 Score=143.96 Aligned_cols=165 Identities=30% Similarity=0.500 Sum_probs=94.9
Q ss_pred CCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCc
Q 036674 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLV 182 (339)
Q Consensus 103 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 182 (339)
+.++.+++.|.+++|.++ .+|..++++.+|+.|++.+|.+. .+|.++..+++|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 334455555555555555 44444555555555555555555 55555555555555555555554 5555555555555
Q ss_pred EEEeecCcCCC-CCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccc
Q 036674 183 ELFLFFNHLSG-SVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENH 261 (339)
Q Consensus 183 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 261 (339)
.|++++|.+.. .+|..|..+ ..|+.|++++|.+. .+|..++.+++|+.|.+.+|+
T Consensus 106 vldltynnl~e~~lpgnff~m-----------------------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYM-----------------------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhccccccccccCCcchhHH-----------------------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 55555554432 233333333 33444444444443 256667777788888888887
Q ss_pred cCCCchHhhhcCCCCcEEEccccccccccchhcCC
Q 036674 262 FQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGI 296 (339)
Q Consensus 262 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 296 (339)
+- .+|..++.++.|++|++.+|.++ .+|..++.
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 76 66777777788888888888777 44444443
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=4.1e-17 Score=157.03 Aligned_cols=216 Identities=28% Similarity=0.343 Sum_probs=137.9
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEee
Q 036674 84 VVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163 (339)
Q Consensus 84 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 163 (339)
-..++++.++++. + |..+. ++|+.|++.+|.++ .+|. .+++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lts-L-P~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTT-L-PDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCc-C-Ccchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 3567899998874 4 44443 48999999999998 4664 3589999999999998 66653 4789999999
Q ss_pred ccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCc
Q 036674 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLP 243 (339)
Q Consensus 164 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 243 (339)
+|.+. .+|.. ..+|+.|++++|.+. .+|. ..++|+.|++++|.+++ +|... ..|+.|++++|++++ +|
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp--~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALP--SELCKLWAYNNQLTS-LP 338 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCc--ccccccccccCcccc-cc
Confidence 99987 55543 357889999999998 4554 24689999999999884 44321 345555555555554 23
Q ss_pred hhhcCCCccceeeccccccCCCchHhhh-----------------cCCCCcEEEccccccccccchhcCCCCCCCEeecc
Q 036674 244 HNVCRGGALQNFTVAENHFQGTIPKSLR-----------------NCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLS 306 (339)
Q Consensus 244 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----------------~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~ 306 (339)
.. ..+|+.|++++|++++ +|.... ..++|+.|++++|++++ +|.. .++|+.|+++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS 410 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVS 410 (788)
T ss_pred cc---ccccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEcc
Confidence 21 1345555555555552 222110 11345566666665553 3321 2456666666
Q ss_pred cccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 307 RNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 307 ~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
+|+++ .+|.. ..+|+.|++++|+++
T Consensus 411 ~N~Ls-sIP~l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 411 GNRLT-SLPML---PSGLLSLSVYRNQLT 435 (788)
T ss_pred CCcCC-CCCcc---hhhhhhhhhccCccc
Confidence 66665 24432 234566666666665
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=1.4e-19 Score=155.55 Aligned_cols=228 Identities=23% Similarity=0.249 Sum_probs=180.2
Q ss_pred CCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeec-cCCCCCCCccccCCCCCcEEEe
Q 036674 108 HLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDT-NQLDGSIPPEVGQLSSLVELFL 186 (339)
Q Consensus 108 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l 186 (339)
.-..++|..|+|+...+.+|..+++|+.|||++|.|+..-|.+|.++++|..|-+.+ |+++......|.++.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567899999999977788999999999999999999988899999999988877766 8999555568999999999999
Q ss_pred ecCcCCCCCCCCCCCCCCCceeecccccCcccCCC-CCCC-CCCcEEeCCCCCCCC------------CCchhhcCCCc-
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPP-SLDN-PMLTRLDLDFNHFTS------------YLPHNVCRGGA- 251 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~-~~L~~L~l~~n~l~~------------~~~~~~~~~~~- 251 (339)
.-|++.-...+.+..+++|..|.+.+|.+. .++. .+.. ..++.+.+..|.+.. ..|..++...-
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 999998777788999999999999999887 4444 4444 778888877766211 11111111111
Q ss_pred ---------------------ccee--ecc-ccccCCC-chHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecc
Q 036674 252 ---------------------LQNF--TVA-ENHFQGT-IPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLS 306 (339)
Q Consensus 252 ---------------------L~~L--~l~-~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~ 306 (339)
++.+ .++ .+...+. ....|..+++|+.|++++|++++.-+.+|.+...+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 1111 111 1112222 33568899999999999999999999999999999999999
Q ss_pred cccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 307 RNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 307 ~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
.|++...-...|.++..|+.|+|.+|+||.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEE
Confidence 999986666788999999999999999984
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=4e-19 Score=136.49 Aligned_cols=180 Identities=28% Similarity=0.417 Sum_probs=151.7
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.+.++.|.++.. ++.+..+.+|++|++.+|+++ .+|..++.+++|+.|+++.|++. .+|..|+.++.|+.||
T Consensus 33 s~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCceeec--CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 5789999999999855 578999999999999999998 88899999999999999999998 8999999999999999
Q ss_pred eeccCCC-CCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCC
Q 036674 162 IDTNQLD-GSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFT 239 (339)
Q Consensus 162 l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~ 239 (339)
+.+|++. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+. .+|..++. ..|++|++.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 9999885 358999999999999999999998 88999999999999999999988 78888777 88999999999887
Q ss_pred CCCchhhcCC---CccceeeccccccCCCchH
Q 036674 240 SYLPHNVCRG---GALQNFTVAENHFQGTIPK 268 (339)
Q Consensus 240 ~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~ 268 (339)
- +|..++.+ .+=+...+.+|.....+.+
T Consensus 187 v-lppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 187 V-LPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred e-cChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 6 44444433 2223444555655544433
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=3.8e-15 Score=143.13 Aligned_cols=155 Identities=28% Similarity=0.445 Sum_probs=115.7
Q ss_pred cCCCHHHHHHHHHHHHhcccCCCCcCCCcccCCCCCCCCCCCCcccceEeCCC-----CCEEEEEcCCCCCccccCCCCC
Q 036674 29 SSESNEEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCNDV-----GRVVNISLPAKGLKGKLHDFSF 103 (339)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~gv~c~~~-----~~v~~l~l~~~~~~~~~~~~~~ 103 (339)
.+...+|.++|.++|+.+.. +. ..+|..+ .+....|.|.|+.|... ..++.|+|+++.+.+.+ +..+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~-~~--~~~W~g~----~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i-p~~i 438 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGL-PL--RFGWNGD----PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-PNDI 438 (623)
T ss_pred cccCchHHHHHHHHHHhcCC-cc--cCCCCCC----CCCCcccccccceeeccCCCCceEEEEEECCCCCccccC-CHHH
Confidence 34466789999999998842 21 2478210 00111237999999521 24888888888888887 6678
Q ss_pred CCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCC-CCCc
Q 036674 104 SSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQL-SSLV 182 (339)
Q Consensus 104 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l-~~L~ 182 (339)
.++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|++|++++|.+++.+|..+... .++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 888888888888888888888888888888888888888888888888888888888888888888888777653 4566
Q ss_pred EEEeecCcC
Q 036674 183 ELFLFFNHL 191 (339)
Q Consensus 183 ~L~l~~n~~ 191 (339)
.+++.+|..
T Consensus 519 ~l~~~~N~~ 527 (623)
T PLN03150 519 SFNFTDNAG 527 (623)
T ss_pred eEEecCCcc
Confidence 677776654
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.43 E-value=2.7e-13 Score=124.41 Aligned_cols=194 Identities=33% Similarity=0.464 Sum_probs=100.5
Q ss_pred eeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCC-CCcEEEeecCcCCCCCCCCCCCCCCCceeecccc
Q 036674 135 DLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLS-SLVELFLFFNHLSGSVPPSLGNLTNLQELILFCN 213 (339)
Q Consensus 135 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 213 (339)
.+++..+.+. .....+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3455554443 22233334455555555555555 4444444442 5555566555555 33344555556666666666
Q ss_pred cCcccCCCCC-CCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccch
Q 036674 214 NLSGSIPPSL-DNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISE 292 (339)
Q Consensus 214 ~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 292 (339)
+++ .++... ..+.|+.|++++|++.. +|........|+++.+++|... ..+..+..+.++..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 555 333333 22556666666666554 3433334444666666666432 23344555555555555666555 2244
Q ss_pred hcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCccc
Q 036674 293 ALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 293 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
.++.++++++|++++|+++ .++. ++.+.+++.|++++|.++..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhccccccceecccccccc-cccc-ccccCccCEEeccCcccccc
Confidence 4555566666666666665 2322 55566666666666655543
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=2.4e-14 Score=121.91 Aligned_cols=242 Identities=20% Similarity=0.250 Sum_probs=133.8
Q ss_pred CCEEEEEcCCCCCcccc---CCCCCCCCCCCCEEeCCCCc---CCCCCCc-------cCCCCCccCeeeccCCCCcCcCc
Q 036674 82 GRVVNISLPAKGLKGKL---HDFSFSSFPHLAYLDLSHNE---LFGTIPP-------QISNLTNLSDLYLEGDQFSGNIP 148 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~---~~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~p 148 (339)
..++.|++++|.+...- -...+.+.++|+..++++-. ....+|. ++..+++|++++||+|-+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 45777777777764321 02345556667777666431 2222332 23345566666666666553333
Q ss_pred hh----hcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCC--
Q 036674 149 PE----VGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPS-- 222 (339)
Q Consensus 149 ~~----l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-- 222 (339)
.. +..+..|++|.+.+|.+...-...++. .|..+. .......-++|+.+....|++.+.....
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence 22 234556666666666554111111100 000000 0011223345666666666654322211
Q ss_pred --CCC-CCCcEEeCCCCCCCCC----CchhhcCCCccceeeccccccCCC----chHhhhcCCCCcEEEccccccccccc
Q 036674 223 --LDN-PMLTRLDLDFNHFTSY----LPHNVCRGGALQNFTVAENHFQGT----IPKSLRNCTSLIRVRVNGNNLTGNIS 291 (339)
Q Consensus 223 --~~~-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~ 291 (339)
+.. +.|+.+.+..|.+... +...+.++++|+.||+.+|-++.. +...+..+++|++|++++|.+.....
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 112 5677777777766432 234566778888888888877743 34455677788888888887765433
Q ss_pred hhc-----CCCCCCCEeecccccCcc----cCCccccCCCCCCeEEcccCcC
Q 036674 292 EAL-----GIYPNLNYIDLSRNNFYG----EISSNLGEYPKLGTLNVSMNNI 334 (339)
Q Consensus 292 ~~l-----~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l 334 (339)
.++ ...|+|+.|.+.+|.++. .+...+...|.|..|+|++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 332 336788888888888763 2333455678888888888877
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=1.1e-12 Score=120.39 Aligned_cols=194 Identities=33% Similarity=0.522 Sum_probs=114.3
Q ss_pred EEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCC-CCcEEEeeccCCCCCCCccccCCCCCcEEEeecC
Q 036674 111 YLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMS-HLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFN 189 (339)
Q Consensus 111 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 189 (339)
.+++..+.+... ...+..++.++.|++.++.+. .+++...... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 355555554312 222344456666666666666 5555555553 6666666666665 44455666666666666666
Q ss_pred cCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchH
Q 036674 190 HLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPK 268 (339)
Q Consensus 190 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 268 (339)
.+. .+|......+.|+.|++++|.+. .+|..... ..|+++.+++|.+.. .+..+..+.++..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-eccc
Confidence 666 44444445666666677666666 44444333 446667776664322 3445566666666666666665 2245
Q ss_pred hhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCccc
Q 036674 269 SLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGE 313 (339)
Q Consensus 269 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 313 (339)
.+..++++++|++++|.++.... ++...++++|++++|.++..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 56666667777777777664333 56667777777777666543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=4.6e-14 Score=127.19 Aligned_cols=174 Identities=29% Similarity=0.429 Sum_probs=116.3
Q ss_pred CCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCcee
Q 036674 129 NLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQEL 208 (339)
Q Consensus 129 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 208 (339)
.+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|+.++++.|.++ ..|..++.++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3444566788888887 78888888888888888888776 77778888888888888888877 5666666543 6677
Q ss_pred ecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccc
Q 036674 209 ILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLT 287 (339)
Q Consensus 209 ~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 287 (339)
-+++|+++ .+|..++. ..|..|+.+.|.+.. +|..++++.+|+.|.+..|.+. .+|..+.. =.|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee
Confidence 77777766 55555544 666666666666654 5555666666666666666665 33333442 34556666666666
Q ss_pred cccchhcCCCCCCCEeecccccCc
Q 036674 288 GNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 288 ~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
.+|..|.+++.|++|-|.+|.+.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC
Confidence 55555666666666666666665
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=5.4e-12 Score=121.52 Aligned_cols=112 Identities=29% Similarity=0.485 Sum_probs=97.9
Q ss_pred CcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeeccc
Q 036674 228 LTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSR 307 (339)
Q Consensus 228 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~ 307 (339)
++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|+.++.+++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77889999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccCcccCCccccCC-CCCCeEEcccCcCcccCC
Q 036674 308 NNFYGEISSNLGEY-PKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 308 n~l~~~~~~~l~~l-~~L~~L~l~~n~lt~~ip 339 (339)
|+++|.+|..+... .++..+++.+|...+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999887753 467788888887655443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=5.6e-13 Score=111.64 Aligned_cols=132 Identities=23% Similarity=0.263 Sum_probs=95.9
Q ss_pred CCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcE
Q 036674 200 GNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIR 278 (339)
Q Consensus 200 ~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 278 (339)
.....|+++++++|.++ .+...... |.++.|+++.|.+... ..+..+++|+.||+++|.++ .+..+-..+.+.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 34456778888888776 45555554 7888888888887753 33777888888888888887 44445566778888
Q ss_pred EEccccccccccchhcCCCCCCCEeecccccCcc-cCCccccCCCCCCeEEcccCcCccc
Q 036674 279 VRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYG-EISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 279 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
|.+++|.+.+. ..++++-+|..||+++|++.. .-...++++|.|+.+.+.+|++.+.
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88888887632 345677788888888888763 2234578888888888888888764
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.9e-13 Score=119.67 Aligned_cols=206 Identities=19% Similarity=0.224 Sum_probs=94.1
Q ss_pred CCCccCeeeccCCCCcCcCc--hhhcCCCCCcEEEeeccCCCCC--CCccccCCCCCcEEEeecCcCCCCCCC-CCCCCC
Q 036674 129 NLTNLSDLYLEGDQFSGNIP--PEVGLMSHLKFLYIDTNQLDGS--IPPEVGQLSSLVELFLFFNHLSGSVPP-SLGNLT 203 (339)
Q Consensus 129 ~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~ 203 (339)
++.+|+.+.|.++.+. ..+ .....|++++.||++.|-+... +.....++++|+.|+++.|++...... .-..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4455555555555544 222 2344555666666665544321 112234555666666665555421111 111344
Q ss_pred CCceeecccccCcccCCCCC-CC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCc-hHhhhcCCCCcEEE
Q 036674 204 NLQELILFCNNLSGSIPPSL-DN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTI-PKSLRNCTSLIRVR 280 (339)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~~-~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ 280 (339)
.|+.|.++.|.++..--..+ .. |.|+.|++.+|...........-++.|++|+|++|++-+.. -.....++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 55556666555542111111 11 55566666555321111122223445566666665554321 12244556666666
Q ss_pred ccccccccc-cchh-----cCCCCCCCEeecccccCccc-CCccccCCCCCCeEEcccCcCc
Q 036674 281 VNGNNLTGN-ISEA-----LGIYPNLNYIDLSRNNFYGE-ISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 281 l~~n~l~~~-~~~~-----l~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~lt 335 (339)
++.+.++.. .|+. ...+++|++|++..|++... --..+..+++|+.|.+..|.++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 666655532 1221 23455666666666665310 1122334455555555555554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=2.4e-13 Score=122.62 Aligned_cols=170 Identities=27% Similarity=0.447 Sum_probs=90.7
Q ss_pred CCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeec
Q 036674 109 LAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFF 188 (339)
Q Consensus 109 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 188 (339)
-...|++.|++. ++|..+..+..|+.+.+..|.+. .+|..++++..|.+++++.|++. .+|..+..++ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 344555555554 55555555555555555555555 55555555555555555555555 4444443332 55555555
Q ss_pred CcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCch
Q 036674 189 NHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIP 267 (339)
Q Consensus 189 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 267 (339)
|+++ .+|..++....|..|+.+.|.+. .+|..+.. .+|+.|.+..|++.. +|..+. .-.|..||++.|+++ .+|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ecc
Confidence 5555 45555555555555555555555 33333333 555555555555544 344444 233455556655555 455
Q ss_pred HhhhcCCCCcEEEccccccc
Q 036674 268 KSLRNCTSLIRVRVNGNNLT 287 (339)
Q Consensus 268 ~~~~~~~~L~~L~l~~n~l~ 287 (339)
-.|.++..|++|-|.+|.+.
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 55555566666666665555
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=3.1e-12 Score=109.22 Aligned_cols=210 Identities=19% Similarity=0.238 Sum_probs=116.9
Q ss_pred CCEEEEEcCCC---CCccccC------CCCCCCCCCCCEEeCCCCcCCCCCCc----cCCCCCccCeeeccCCCCcCcCc
Q 036674 82 GRVVNISLPAK---GLKGKLH------DFSFSSFPHLAYLDLSHNELFGTIPP----QISNLTNLSDLYLEGDQFSGNIP 148 (339)
Q Consensus 82 ~~v~~l~l~~~---~~~~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~~p 148 (339)
..++..++++. ++...++ ...+..+++|++++||.|.+...-+. .+..+..|++|+|.+|.+...-.
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag 137 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG 137 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH
Confidence 46777776653 1122221 23567788999999999988643333 35678999999999998872111
Q ss_pred -------------hhhcCCCCCcEEEeeccCCCCC----CCccccCCCCCcEEEeecCcCCCCC----CCCCCCCCCCce
Q 036674 149 -------------PEVGLMSHLKFLYIDTNQLDGS----IPPEVGQLSSLVELFLFFNHLSGSV----PPSLGNLTNLQE 207 (339)
Q Consensus 149 -------------~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~ 207 (339)
.....-++|+.+..++|++... +...|...+.|+.+.+..|.+.... ...+..++.|+.
T Consensus 138 ~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Lev 217 (382)
T KOG1909|consen 138 GRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEV 217 (382)
T ss_pred HHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCccee
Confidence 1123346777777777776532 2234455677777777777664221 123455666666
Q ss_pred eecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhh-----hcCCCCcEEEcc
Q 036674 208 LILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSL-----RNCTSLIRVRVN 282 (339)
Q Consensus 208 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~ 282 (339)
|++.+|.++..... .+...+..+++|+.|.+++|.+.......| ...|+|+.+.+.
T Consensus 218 Ldl~DNtft~egs~-------------------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 218 LDLRDNTFTLEGSV-------------------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred eecccchhhhHHHH-------------------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 66666655421111 122333444455555555555543322222 224566666666
Q ss_pred ccccccc----cchhcCCCCCCCEeecccccC
Q 036674 283 GNNLTGN----ISEALGIYPNLNYIDLSRNNF 310 (339)
Q Consensus 283 ~n~l~~~----~~~~l~~~~~L~~L~L~~n~l 310 (339)
+|.++.. +...+...+.|..|+|++|.+
T Consensus 279 gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 279 GNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6655532 112233455666666666666
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2.4e-11 Score=96.98 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=34.5
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccccccccc-chhcCCCCCCCEee
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNI-SEALGIYPNLNYID 304 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ 304 (339)
.+|+.|++++|.++.. +.+..++.|++|++++|.+++..+.....+++|++|++++|++.+.- -..+..+++|++|+
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 4455555555555432 23445566666666666666332222234566666666666665421 13345566666666
Q ss_pred cccccCcccC---CccccCCCCCCeEEc
Q 036674 305 LSRNNFYGEI---SSNLGEYPKLGTLNV 329 (339)
Q Consensus 305 L~~n~l~~~~---~~~l~~l~~L~~L~l 329 (339)
+.+|+++... ...+..+|+|+.||-
T Consensus 120 L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 120 LEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666665321 113345666666653
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.2e-12 Score=110.77 Aligned_cols=183 Identities=22% Similarity=0.207 Sum_probs=137.6
Q ss_pred cCCCCCcEEEeeccCCCCCCC--ccccCCCCCcEEEeecCcCCCCCC--CCCCCCCCCceeecccccCcccCCCCCCC--
Q 036674 152 GLMSHLKFLYIDTNQLDGSIP--PEVGQLSSLVELFLFFNHLSGSVP--PSLGNLTNLQELILFCNNLSGSIPPSLDN-- 225 (339)
Q Consensus 152 ~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-- 225 (339)
.++.+|+.+.+.++.+. ..+ .....+++++.|+++.|-+....+ .-...+++|+.|+++.|.+..........
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56889999999998876 334 356789999999999998764322 34567899999999999987433333333
Q ss_pred CCCcEEeCCCCCCCCC-CchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccccccccc-chhcCCCCCCCEe
Q 036674 226 PMLTRLDLDFNHFTSY-LPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNI-SEALGIYPNLNYI 303 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L 303 (339)
++|+.|.+++|+++.. +......+|+|+.|++..|.....-.....-+..|++|+|++|.+-+.. -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 8999999999999843 3334557899999999999532232233445678999999999887543 2346789999999
Q ss_pred ecccccCccc-CCcc-----ccCCCCCCeEEcccCcCc
Q 036674 304 DLSRNNFYGE-ISSN-----LGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 304 ~L~~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~lt 335 (339)
+++.|.+.+. .|+. ...+++|+.|++..|++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 9999998753 3333 356899999999999883
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=3.2e-11 Score=119.02 Aligned_cols=86 Identities=33% Similarity=0.422 Sum_probs=56.8
Q ss_pred CCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCc
Q 036674 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLV 182 (339)
Q Consensus 103 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 182 (339)
|..++.|++||+++|.--+.+|..++++-+||+|+++++.+. .+|..+.+++.|.+|++..+.....+|.....+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 566677777777766555566777777777777777777766 6777777777777777766655444455555567777
Q ss_pred EEEeecC
Q 036674 183 ELFLFFN 189 (339)
Q Consensus 183 ~L~l~~n 189 (339)
+|.+..-
T Consensus 646 ~L~l~~s 652 (889)
T KOG4658|consen 646 VLRLPRS 652 (889)
T ss_pred EEEeecc
Confidence 7766543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1e-10 Score=93.42 Aligned_cols=106 Identities=24% Similarity=0.280 Sum_probs=42.9
Q ss_pred CCCcEEeCCCCCCCCCCchhhc-CCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhc-CCCCCCCEe
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVC-RGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEAL-GIYPNLNYI 303 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~L 303 (339)
.++++|++++|.++.. +.++ .+.+|+.|++++|.+++. + .+..++.|++|++++|.++.. .+.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEE
Confidence 5678899999988763 3444 578999999999999853 3 477889999999999999954 3333 468999999
Q ss_pred ecccccCccc-CCccccCCCCCCeEEcccCcCcc
Q 036674 304 DLSRNNFYGE-ISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 304 ~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
++++|++... .-..+..+|+|+.|++.+|+++.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999999742 22457789999999999999974
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=3.6e-11 Score=100.95 Aligned_cols=205 Identities=21% Similarity=0.236 Sum_probs=125.1
Q ss_pred CCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeec-cCCCCCCCccccCC
Q 036674 100 DFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDT-NQLDGSIPPEVGQL 178 (339)
Q Consensus 100 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l 178 (339)
+..+.-+++|..+.++.+.-. .+.+....-|.|+.+...+..++ ..| .+--...+....... ...+|..-..+..-
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVP-SLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccc-cccchhhhcCccCCCCCccCCceEEecchH
Confidence 455566777778877777543 22222223356777777665544 111 111111111111111 01112211222233
Q ss_pred CCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeec
Q 036674 179 SSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTV 257 (339)
Q Consensus 179 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 257 (339)
+.|+++++++|.++ .+.++..-.+.++.|+++.|.+. .+.. +.. ++|+.|++++|.++. +..+-..+.+.++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 56788888888887 66677777788888888888876 2222 333 788888888888765 3334456678888888
Q ss_pred cccccCCCchHhhhcCCCCcEEEcccccccccc-chhcCCCCCCCEeecccccCccc
Q 036674 258 AENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNI-SEALGIYPNLNYIDLSRNNFYGE 313 (339)
Q Consensus 258 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~ 313 (339)
+.|.+.+ .+.+..+-+|..||+.+|++...- -..++++|-|+++.|.+|++.+.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8887752 345667778888889888887532 24578888999999999988743
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=1.7e-10 Score=75.85 Aligned_cols=61 Identities=30% Similarity=0.430 Sum_probs=44.1
Q ss_pred CCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcC
Q 036674 274 TSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNI 334 (339)
Q Consensus 274 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 334 (339)
|+|++|++++|+++...+.++..+++|++|++++|+++...+..|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4667777777777766666777777777777777777766666777777777777777764
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=2.5e-10 Score=112.80 Aligned_cols=128 Identities=26% Similarity=0.315 Sum_probs=100.7
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCc--CCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEE
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNE--LFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFL 160 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (339)
.++.+.+-++.+.... .-...++|++|-+.+|. +.....+.|..++.|++||+++|.-.+.+|..++.+-+||+|
T Consensus 524 ~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhcc---CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4566666555554322 22344579999998886 443445558889999999999987667999999999999999
Q ss_pred EeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeeccccc
Q 036674 161 YIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNN 214 (339)
Q Consensus 161 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 214 (339)
+++++.+. .+|..++++..|.+|++..+.....+|.....+.+|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999988 899999999999999999887665667777779999999987654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=5.6e-10 Score=73.41 Aligned_cols=61 Identities=33% Similarity=0.521 Sum_probs=47.5
Q ss_pred CccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccC
Q 036674 250 GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNF 310 (339)
Q Consensus 250 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 310 (339)
++|++|++++|+++...+..|..+++|++|++++|.++...+.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788888877766666778888888888888888877777788888888888888764
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=2.7e-10 Score=105.08 Aligned_cols=223 Identities=24% Similarity=0.219 Sum_probs=119.0
Q ss_pred CCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCC
Q 036674 102 SFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSL 181 (339)
Q Consensus 102 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 181 (339)
.+..+++|+.+++.+|.+. .+...+..+++|++|++++|.|... ..+..++.|+.|++++|.+. .+. .+..+..|
T Consensus 90 ~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L 164 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DIS-GLESLKSL 164 (414)
T ss_pred ccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hcc-CCccchhh
Confidence 3556666777777777665 2322255666777777777766532 23445555677777777665 222 24446666
Q ss_pred cEEEeecCcCCCCCC-CCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCC--ccceeecc
Q 036674 182 VELFLFFNHLSGSVP-PSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGG--ALQNFTVA 258 (339)
Q Consensus 182 ~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~ 258 (339)
+.+++++|.+...-+ . ...+.+++.+.+.+|.+.. +...-....+..+++..|.++..-+ +..+. +|+.++++
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLS 240 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcc
Confidence 677777766653322 1 3556666666666666541 1111111333333555555443211 11122 26777777
Q ss_pred ccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcc---cCCc-cccCCCCCCeEEcccCcC
Q 036674 259 ENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYG---EISS-NLGEYPKLGTLNVSMNNI 334 (339)
Q Consensus 259 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~---~~~~-~l~~l~~L~~L~l~~n~l 334 (339)
+|++.. .+..+..+..+..+++.+|.+...- .+...+.+..+....|++.. .... .....+.+..+.+.+|+.
T Consensus 241 ~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 241 GNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 777762 2244556667777777777665321 12334455555666666542 1111 144566677777777765
Q ss_pred cc
Q 036674 335 TG 336 (339)
Q Consensus 335 t~ 336 (339)
..
T Consensus 318 ~~ 319 (414)
T KOG0531|consen 318 RK 319 (414)
T ss_pred cc
Confidence 44
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.2e-11 Score=101.99 Aligned_cols=194 Identities=20% Similarity=0.157 Sum_probs=134.6
Q ss_pred CccCeeeccCCCCcC-cCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCc-CCCC-CCCCCCCCCCCce
Q 036674 131 TNLSDLYLEGDQFSG-NIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNH-LSGS-VPPSLGNLTNLQE 207 (339)
Q Consensus 131 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~ 207 (339)
+.|++|||++..++- .+-..+..+.+|+.|.+.++++.+.+...+.+..+|+.++++.+. ++.. ..-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 359999999988762 233456788999999999999988888888999999999998764 3311 1123568899999
Q ss_pred eecccccCcccCCC-CCCC--CCCcEEeCCCCCC---CCCCchhhcCCCccceeeccccc-cCCCchHhhhcCCCCcEEE
Q 036674 208 LILFCNNLSGSIPP-SLDN--PMLTRLDLDFNHF---TSYLPHNVCRGGALQNFTVAENH-FQGTIPKSLRNCTSLIRVR 280 (339)
Q Consensus 208 L~l~~n~l~~~~~~-~~~~--~~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 280 (339)
|+++.|.+...... .... ++|+.|+++|+.- ...+......+++|.+||+++|. ++...-..|-.++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999987643322 2222 8899999988642 12233445678999999999864 3433445567788999999
Q ss_pred ccccccccccchh---cCCCCCCCEeecccccCcccCCccccCCCCCCe
Q 036674 281 VNGNNLTGNISEA---LGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGT 326 (339)
Q Consensus 281 l~~n~l~~~~~~~---l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 326 (339)
+++|.. .+|.. +...|.|.+|++.++--.+...-....+++|+.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 999853 33433 466789999998876543222222335566554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=3.3e-10 Score=104.48 Aligned_cols=218 Identities=25% Similarity=0.252 Sum_probs=143.4
Q ss_pred CCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEE
Q 036674 105 SFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVEL 184 (339)
Q Consensus 105 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 184 (339)
.+..++.+.++.|.+. .+-..+..+++|+.+++.+|.+. .+...+..+++|++|++++|.++..-+ +..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence 5566777778888776 33444778888999999998887 444446778889999999988874433 5567778888
Q ss_pred EeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccC
Q 036674 185 FLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQ 263 (339)
Q Consensus 185 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 263 (339)
++.+|.+.. ...+..++.|+.+++++|.+...-+..... .+++.+++.+|.+... ..+..+..+..+++..|.++
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 998888873 234555788888888888887433311122 7788888888877642 23334455555577777776
Q ss_pred CCchHhhhcCC--CCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 264 GTIPKSLRNCT--SLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 264 ~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
..-+ +..+. +|+.+++++|.+.. .+..+..++.+..|++.+|++...- .+...+.+..+....|++.
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 3322 11222 37888888888773 3344566788888888888876321 1334455555555555543
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.68 E-value=2.3e-09 Score=88.96 Aligned_cols=242 Identities=18% Similarity=0.200 Sum_probs=121.6
Q ss_pred CCEEEEEcCCCCCcccc---CCCCCCCCCCCCEEeCCCCcC---CCCCC-------ccCCCCCccCeeeccCCCCcCcCc
Q 036674 82 GRVVNISLPAKGLKGKL---HDFSFSSFPHLAYLDLSHNEL---FGTIP-------PQISNLTNLSDLYLEGDQFSGNIP 148 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~~---~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~p 148 (339)
..++.++|++|.+...- ....+.+-++|+..+++.-.. .+.++ .++.+|++|+..+|++|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 45677777777665321 023455556666666664321 11222 234456666666666666654444
Q ss_pred hhh----cCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCC--
Q 036674 149 PEV----GLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPS-- 222 (339)
Q Consensus 149 ~~l----~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-- 222 (339)
+.+ ..-+.|++|.+++|.+.......++. .|++| ..| ....+-+.|+.+....|++.. .+..
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlen-gs~~~~ 177 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLEN-GSKELS 177 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhcc-CcHHHH
Confidence 332 34455666666666553111111110 00000 000 011223445555555555542 1211
Q ss_pred ---CCC-CCCcEEeCCCCCCCCCCch-----hhcCCCccceeeccccccCCCc----hHhhhcCCCCcEEEccccccccc
Q 036674 223 ---LDN-PMLTRLDLDFNHFTSYLPH-----NVCRGGALQNFTVAENHFQGTI----PKSLRNCTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 223 ---~~~-~~L~~L~l~~n~l~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~ 289 (339)
+.. ..|+++.+..|.+...... .+..+++|+.||+.+|-++... ...+...+.|++|.+.+|-++..
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 111 4666777776666432111 2334677777888877776432 23345556777888777766543
Q ss_pred cchhc------CCCCCCCEeecccccCcccCCcc-------ccCCCCCCeEEcccCcCc
Q 036674 290 ISEAL------GIYPNLNYIDLSRNNFYGEISSN-------LGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 290 ~~~~l------~~~~~L~~L~L~~n~l~~~~~~~-------l~~l~~L~~L~l~~n~lt 335 (339)
....+ ...|+|..|...+|...+.+-.. -.++|-|..|.+.+|+|.
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 22221 23577777777777765432111 124666777777777764
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=5.9e-09 Score=87.67 Aligned_cols=222 Identities=20% Similarity=0.157 Sum_probs=128.9
Q ss_pred CCCCEEeCCCCcCCCCC-CccC-CCCCccCeeeccCCCCcC--cCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCc
Q 036674 107 PHLAYLDLSHNELFGTI-PPQI-SNLTNLSDLYLEGDQFSG--NIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLV 182 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~~~-~~~~-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 182 (339)
+.++.+.+.++.+...- ...| ..++.++.+||.+|.++. .+...+.++|.|+.|+++.|.+...+...-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 34445555555543110 1112 245677778888877762 3334456778888888888877643332223566788
Q ss_pred EEEeecCcCCCCC-CCCCCCCCCCceeecccccCcccC-C-CCCCC--CCCcEEeCCCCCCCCC--CchhhcCCCcccee
Q 036674 183 ELFLFFNHLSGSV-PPSLGNLTNLQELILFCNNLSGSI-P-PSLDN--PMLTRLDLDFNHFTSY--LPHNVCRGGALQNF 255 (339)
Q Consensus 183 ~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~-~-~~~~~--~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L 255 (339)
.|.+.+..+.... ...+..++.+++|.++.|.+.... . ..... +.++++++.+|..... .-..-..++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 8888777665332 234556777778877777443111 1 11111 4566666655542210 00111234777888
Q ss_pred eccccccCCCc-hHhhhcCCCCcEEEccccccccc-cchhcCCCCCCCEeecccccCcccCCc------cccCCCCCCeE
Q 036674 256 TVAENHFQGTI-PKSLRNCTSLIRVRVNGNNLTGN-ISEALGIYPNLNYIDLSRNNFYGEISS------NLGEYPKLGTL 327 (339)
Q Consensus 256 ~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L 327 (339)
.+..|++.+.. -..+..+|.+.-|+++.+++... .-+.+..++.|..|.+++|++...+.. .++++++++.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 88888776432 23345667777888888887653 235677888888888888887643322 24567777776
Q ss_pred E
Q 036674 328 N 328 (339)
Q Consensus 328 ~ 328 (339)
+
T Consensus 285 N 285 (418)
T KOG2982|consen 285 N 285 (418)
T ss_pred c
Confidence 5
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=5.1e-09 Score=97.74 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=79.9
Q ss_pred CccccCCCCCcEEEeecCcCCCCCCCCCCCC-CCCceeecccc---------cCcccCCCCCCCCCCcEEeCCCCCCCCC
Q 036674 172 PPEVGQLSSLVELFLFFNHLSGSVPPSLGNL-TNLQELILFCN---------NLSGSIPPSLDNPMLTRLDLDFNHFTSY 241 (339)
Q Consensus 172 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n---------~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 241 (339)
|-.+..+.+|+.|.+.++.+.. ...+..+ ..|++|...+. .-.|.+...+...+|...++++|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~- 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL- 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh-
Confidence 5567788999999999988752 2222211 12232222110 001122222222455666666666553
Q ss_pred CchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCC
Q 036674 242 LPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEY 321 (339)
Q Consensus 242 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l 321 (339)
+...+.-++.|+.|+|++|++++.. .+..++.|++|||++|.++...--....+ +|..|.+++|.++. +- .+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t-L~-gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT-LR-GIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh-hh-hHHhh
Confidence 4445555566666666666665332 45666666666666666652211111122 25666666666542 21 24455
Q ss_pred CCCCeEEcccCcCc
Q 036674 322 PKLGTLNVSMNNIT 335 (339)
Q Consensus 322 ~~L~~L~l~~n~lt 335 (339)
.+|+.||+++|-+.
T Consensus 254 ksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLS 267 (1096)
T ss_pred hhhhccchhHhhhh
Confidence 55666666665544
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.2e-10 Score=92.75 Aligned_cols=175 Identities=18% Similarity=0.196 Sum_probs=111.8
Q ss_pred CCcEEEeeccCCCCC-CCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeeccccc-CcccCCCC-CCC-CCCcEE
Q 036674 156 HLKFLYIDTNQLDGS-IPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNN-LSGSIPPS-LDN-PMLTRL 231 (339)
Q Consensus 156 ~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~-~~~-~~L~~L 231 (339)
.|+++|+++..++.. +-..+.++.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+. ++...... +.. +.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777666521 22345667777777777777776666667777777777777653 22111111 122 667777
Q ss_pred eCCCCCCCCCCchhh-c-CCCccceeeccccccC---CCchHhhhcCCCCcEEEcccc-ccccccchhcCCCCCCCEeec
Q 036674 232 DLDFNHFTSYLPHNV-C-RGGALQNFTVAENHFQ---GTIPKSLRNCTSLIRVRVNGN-NLTGNISEALGIYPNLNYIDL 305 (339)
Q Consensus 232 ~l~~n~l~~~~~~~~-~-~~~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~L 305 (339)
++++|.+.......+ . --.+|+.|+++++.-. ..+..-...+|+|.+||+++| .++......+-+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777776654321111 1 1256677777765321 122333467899999999987 555555666778999999999
Q ss_pred ccccCcccCCc---cccCCCCCCeEEcccC
Q 036674 306 SRNNFYGEISS---NLGEYPKLGTLNVSMN 332 (339)
Q Consensus 306 ~~n~l~~~~~~---~l~~l~~L~~L~l~~n 332 (339)
+.|... +|. .+...|+|.+||+.++
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 998853 444 3567889999998876
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=3.2e-08 Score=83.35 Aligned_cols=210 Identities=23% Similarity=0.206 Sum_probs=135.5
Q ss_pred CCCccCeeeccCCCCcCc-Cchhh-cCCCCCcEEEeeccCCCC--CCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCC
Q 036674 129 NLTNLSDLYLEGDQFSGN-IPPEV-GLMSHLKFLYIDTNQLDG--SIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTN 204 (339)
Q Consensus 129 ~l~~L~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 204 (339)
....++.+.+.++.+... ....| ...+.++.+|+.+|.++. .+...+.++|.|+.|+++.|.+...+...-....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 334555666666665421 11223 356789999999999873 24445679999999999999987544332246778
Q ss_pred CceeecccccCcccCCCCC-CC-CCCcEEeCCCCCCCCC--CchhhcC-CCccceeeccccccCCC--chHhhhcCCCCc
Q 036674 205 LQELILFCNNLSGSIPPSL-DN-PMLTRLDLDFNHFTSY--LPHNVCR-GGALQNFTVAENHFQGT--IPKSLRNCTSLI 277 (339)
Q Consensus 205 L~~L~l~~n~l~~~~~~~~-~~-~~L~~L~l~~n~l~~~--~~~~~~~-~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~ 277 (339)
|+.|.+.+..+.-.....+ .. |.+++|+++.|.+.-. ....... -+.+.+++.-.|....- .-..-..+|++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 9999998887764333332 22 8888888888843211 0011111 12445555544433210 011123468899
Q ss_pred EEEcccccccccc-chhcCCCCCCCEeecccccCcc-cCCccccCCCCCCeEEcccCcCcccC
Q 036674 278 RVRVNGNNLTGNI-SEALGIYPNLNYIDLSRNNFYG-EISSNLGEYPKLGTLNVSMNNITGGI 338 (339)
Q Consensus 278 ~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~lt~~i 338 (339)
.+.+..|.+.+.. .+....+|.+.-|+|+.|++.+ +.-+.+.++++|.-|.+++|++..++
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 9999999876543 3445668888999999999864 23456889999999999999987653
No 49
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.46 E-value=3e-07 Score=55.43 Aligned_cols=42 Identities=38% Similarity=0.885 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcccCCCCcCCCcccCCCCCCCCCCCCcccceEeC
Q 036674 33 NEEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCN 79 (339)
Q Consensus 33 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~gv~c~ 79 (339)
.+|.++|++||..+..++...+.+|.... ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-----~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-----DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT-------S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-----CCCCeeeccEEeC
Confidence 57999999999999777778899993221 3789999999995
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=3.4e-09 Score=98.87 Aligned_cols=178 Identities=23% Similarity=0.246 Sum_probs=107.2
Q ss_pred CCCCCCCCCCCEEeCCCCcCCCCCCccCCCC-CccCeeeccCCCCc----------CcCchhhcCCCCCcEEEeeccCCC
Q 036674 100 DFSFSSFPHLAYLDLSHNELFGTIPPQISNL-TNLSDLYLEGDQFS----------GNIPPEVGLMSHLKFLYIDTNQLD 168 (339)
Q Consensus 100 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~l~~n~~~ 168 (339)
+-.+..++.|++|.++++.+.. ...+..+ .+|++|--.+ .+. |.+..++ ....|...+++.|.++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 3467777888888888887752 1111111 2333332221 111 0111111 1345667777777776
Q ss_pred CCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhc
Q 036674 169 GSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVC 247 (339)
Q Consensus 169 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~ 247 (339)
....++.-++.|+.|+|++|+++... .+..+++|++|++++|.+. .+|..-.. .+|..|.+.+|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHH
Confidence 55666777788888888888877332 6777888888888888877 44443322 5678888887777642 3456
Q ss_pred CCCccceeeccccccCCCc-hHhhhcCCCCcEEEccccccc
Q 036674 248 RGGALQNFTVAENHFQGTI-PKSLRNCTSLIRVRVNGNNLT 287 (339)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~ 287 (339)
++++|+.||+++|-+.+.- -..+..+..|+.|.+.+|.+-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6777778888887666421 122345566777777777654
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=7.6e-09 Score=77.21 Aligned_cols=128 Identities=18% Similarity=0.171 Sum_probs=75.7
Q ss_pred CceeecccccCcccCCCC----CCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEE
Q 036674 205 LQELILFCNNLSGSIPPS----LDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVR 280 (339)
Q Consensus 205 L~~L~l~~n~l~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 280 (339)
+..+++++|++. .+++. .....|+.+++++|.+....+..-...+.+++|++++|.++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344555555543 22222 12256677777777777655444455567777777777777 5666677777888888
Q ss_pred ccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 281 VNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 281 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
++.|.+. ..|..+..+.+|-.|+..+|... .++..+-.-...-..++.++++.+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence 8877776 44555555777777777777765 344332222222233345555544
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=7.2e-08 Score=80.26 Aligned_cols=191 Identities=21% Similarity=0.202 Sum_probs=103.6
Q ss_pred CCCCCCCCCCEEeCCCCcCCCCCCc----cCCCCCccCeeeccCCCCcCc----Cchhh---------cCCCCCcEEEee
Q 036674 101 FSFSSFPHLAYLDLSHNELFGTIPP----QISNLTNLSDLYLEGDQFSGN----IPPEV---------GLMSHLKFLYID 163 (339)
Q Consensus 101 ~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~----~p~~l---------~~l~~L~~L~l~ 163 (339)
+.+.+||+|+..+|+.|.+....|. .++.-+.|.+|.+++|.+... +..++ ..-|.|+.+.+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4678999999999999998765554 456778999999999987621 11111 233667777777
Q ss_pred ccCCCCCCCcc-----ccCCCCCcEEEeecCcCCCCCCC-----CCCCCCCCceeecccccCcccCCCCCCCCCCcEEeC
Q 036674 164 TNQLDGSIPPE-----VGQLSSLVELFLFFNHLSGSVPP-----SLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDL 233 (339)
Q Consensus 164 ~n~~~~~~p~~-----~~~l~~L~~L~l~~n~~~~~~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 233 (339)
.|++. ..+.. +..-..|+++.+..|.+...... .+..+.+|+.|++.+|.++-....
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~------------ 232 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR------------ 232 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH------------
Confidence 77664 22221 12224566666666665422111 122344555555555544421111
Q ss_pred CCCCCCCCCchhhcCCCccceeeccccccCCCchHhh------hcCCCCcEEEccccccccccc------hhc-CCCCCC
Q 036674 234 DFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSL------RNCTSLIRVRVNGNNLTGNIS------EAL-GIYPNL 300 (339)
Q Consensus 234 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~------~~l-~~~~~L 300 (339)
.+...++.++.|+.|.+.+|-++......+ ...|+|..|...+|.+.+..- ... +.+|-|
T Consensus 233 -------~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L 305 (388)
T COG5238 233 -------YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLL 305 (388)
T ss_pred -------HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHH
Confidence 112233344555555555555543322221 123566666666664443211 111 345666
Q ss_pred CEeecccccCc
Q 036674 301 NYIDLSRNNFY 311 (339)
Q Consensus 301 ~~L~L~~n~l~ 311 (339)
..|.+.+|++.
T Consensus 306 ~~le~ngNr~~ 316 (388)
T COG5238 306 VDLERNGNRIK 316 (388)
T ss_pred HHHHHccCcch
Confidence 66666677664
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2e-06 Score=51.94 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCCcEEEccccccccccchhcCCCCCCCEeecccccCc
Q 036674 274 TSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 274 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
++|++|++++|++++ +|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 356777777777773 4445667777777777777766
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=2.7e-07 Score=69.07 Aligned_cols=88 Identities=23% Similarity=0.300 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.+++++|.+.... +....+++.++.+++++|.+. .+|.++..++.|+.|+++.|.+. ..|..+..+.++-+|+
T Consensus 53 ~el~~i~ls~N~fk~fp-~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFP-KKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhhCC-HHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 45777777777776543 333455667777777777776 66666777777777777777776 6666666677777777
Q ss_pred eeccCCCCCCCc
Q 036674 162 IDTNQLDGSIPP 173 (339)
Q Consensus 162 l~~n~~~~~~p~ 173 (339)
..+|... .+|.
T Consensus 130 s~~na~~-eid~ 140 (177)
T KOG4579|consen 130 SPENARA-EIDV 140 (177)
T ss_pred CCCCccc-cCcH
Confidence 7666655 4443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=7.6e-06 Score=49.38 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=18.2
Q ss_pred ccceeeccccccCCCchHhhhcCCCCcEEEccccccc
Q 036674 251 ALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLT 287 (339)
Q Consensus 251 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 287 (339)
+|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33334555555555555555555
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2.4e-05 Score=70.51 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=83.3
Q ss_pred CCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCc
Q 036674 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLV 182 (339)
Q Consensus 103 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 182 (339)
+..+++++.|++++|.++ .+|. + ..+|++|.+++|.-...+|..+ .++|++|++++|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445688999999999876 5552 2 2469999998865434667655 36899999998843335553 477
Q ss_pred EEEeecCcCCCCCCCCCCCC-CCCceeecccccCc--ccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccc
Q 036674 183 ELFLFFNHLSGSVPPSLGNL-TNLQELILFCNNLS--GSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAE 259 (339)
Q Consensus 183 ~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 259 (339)
.|++..+.... +..+ ++|+.|.+.+++.. ...+..+ -++|++|++++|.... .|..+. .+|+.|+++.
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L-PsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI-SPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheecccccccccccccccc-CCcccEEEecCCCccc-Cccccc--ccCcEEEecc
Confidence 77776555431 1222 24666666433211 0111111 1678888888877543 333222 5777888776
Q ss_pred cc
Q 036674 260 NH 261 (339)
Q Consensus 260 n~ 261 (339)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 53
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.6e-05 Score=63.60 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=52.0
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccccccccc-chhcCCCCCCCEee
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNI-SEALGIYPNLNYID 304 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ 304 (339)
.+...+++++|.+.. ...|.+++.|++|.+.+|+++..-|..-.-+++|+.|.+.+|.+.... .+-+..+|.|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 344455555555432 133445556666666666666444443344455666666666554211 12234456666666
Q ss_pred cccccCcccC---CccccCCCCCCeEEcc
Q 036674 305 LSRNNFYGEI---SSNLGEYPKLGTLNVS 330 (339)
Q Consensus 305 L~~n~l~~~~---~~~l~~l~~L~~L~l~ 330 (339)
+-+|+.+..- ...+..+|+|+.||+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 6666654221 1234455666666654
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=4.4e-05 Score=68.85 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=81.7
Q ss_pred CCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCc
Q 036674 127 ISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQ 206 (339)
Q Consensus 127 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 206 (339)
+..+.+++.|++++|.+. .+|. -..+|++|.+++|.-...+|..+ .++|++|++++|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445688999999999887 6662 23469999998865444666544 25788999988732224443 466
Q ss_pred eeecccccCc--ccCCCCCCCCCCcEEeCCCCCCCC--CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcc
Q 036674 207 ELILFCNNLS--GSIPPSLDNPMLTRLDLDFNHFTS--YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVN 282 (339)
Q Consensus 207 ~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 282 (339)
.|++..+... +.+| +.|+.|.+.+++... ..+.. -.++|++|++++|... ..|..+. .+|+.|.++
T Consensus 116 ~L~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVP-----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCc-----chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 6666655432 1222 456777775432110 01111 1257888888877755 3343332 577788877
Q ss_pred cc
Q 036674 283 GN 284 (339)
Q Consensus 283 ~n 284 (339)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 65
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=4.9e-06 Score=80.78 Aligned_cols=133 Identities=18% Similarity=0.235 Sum_probs=81.4
Q ss_pred CCCcEEEeecCcCCC-CCCCCC-CCCCCCceeecccccCccc-CCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccce
Q 036674 179 SSLVELFLFFNHLSG-SVPPSL-GNLTNLQELILFCNNLSGS-IPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQN 254 (339)
Q Consensus 179 ~~L~~L~l~~n~~~~-~~~~~l-~~l~~L~~L~l~~n~l~~~-~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 254 (339)
.+|++|++++...-. ..|..+ .-+|.|+.|.+.+-.+... +...... ++|..||+++.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 578888887744321 111122 2467888888887665422 2222333 7888888888887753 66777888888
Q ss_pred eeccccccCC-CchHhhhcCCCCcEEEcccccccccc--c----hhcCCCCCCCEeecccccCccc
Q 036674 255 FTVAENHFQG-TIPKSLRNCTSLIRVRVNGNNLTGNI--S----EALGIYPNLNYIDLSRNNFYGE 313 (339)
Q Consensus 255 L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~--~----~~l~~~~~L~~L~L~~n~l~~~ 313 (339)
|.+.+=.+.. ..-..+-++++|+.||+|+....... . +.-..+|+|+.||.|+..+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8877766653 22233456788888888876544221 1 1123467788888877776643
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=6.5e-05 Score=60.25 Aligned_cols=103 Identities=20% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCC-CccccCCCCCcEEEe
Q 036674 108 HLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSI-PPEVGQLSSLVELFL 186 (339)
Q Consensus 108 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l 186 (339)
+...+||++|.+. . .+.|..++.|..|.+.+|+|+...|.--..+++|+.|.+.+|.+.... -.-+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3444555555442 1 122444555555555555555332222233445555555555543110 012345555555555
Q ss_pred ecCcCCCCC---CCCCCCCCCCceeeccc
Q 036674 187 FFNHLSGSV---PPSLGNLTNLQELILFC 212 (339)
Q Consensus 187 ~~n~~~~~~---~~~l~~l~~L~~L~l~~ 212 (339)
-+|.+...- -..+..+++|+.||+..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 555544211 11344556666666554
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.49 E-value=0.00046 Score=52.43 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=5.9
Q ss_pred CCCCCCCCceeecc
Q 036674 198 SLGNLTNLQELILF 211 (339)
Q Consensus 198 ~l~~l~~L~~L~l~ 211 (339)
.+..+++|+.+.+.
T Consensus 76 ~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 76 AFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTT-TTECEEEET
T ss_pred cccccccccccccC
Confidence 33444444444443
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.44 E-value=0.00052 Score=52.16 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=36.6
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeec
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDL 305 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 305 (339)
++++.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++|+.+.+..+ +.......+... +|+.+.+
T Consensus 35 ~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 35 TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred ccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 34555555442 3333334455555566666644 332233345556666666666554 443444455555 6666666
Q ss_pred ccccCcccCCccccCCCCC
Q 036674 306 SRNNFYGEISSNLGEYPKL 324 (339)
Q Consensus 306 ~~n~l~~~~~~~l~~l~~L 324 (339)
.. .+.......|.++++|
T Consensus 111 ~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 111 PS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-B-SS----GGG-----
T ss_pred CC-CccEECCccccccccC
Confidence 54 3332334455555555
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=4.2e-06 Score=70.20 Aligned_cols=102 Identities=24% Similarity=0.326 Sum_probs=77.6
Q ss_pred eCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCc--hhhcCCC
Q 036674 78 CNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIP--PEVGLMS 155 (339)
Q Consensus 78 c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~ 155 (339)
|.....|..|+..++++.+.. ...+++.|++|.|+-|.|+..- .+..|++|++|+|..|.|. .+. ..+.+++
T Consensus 15 ~sdl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred hhHHHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 334455677777777776543 4678999999999999997433 3889999999999999987 333 3568899
Q ss_pred CCcEEEeeccCCCCCCCc-----cccCCCCCcEEE
Q 036674 156 HLKFLYIDTNQLDGSIPP-----EVGQLSSLVELF 185 (339)
Q Consensus 156 ~L~~L~l~~n~~~~~~p~-----~~~~l~~L~~L~ 185 (339)
+|+.|.+..|.-.+..+. .+.-+|+|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999999988766554 345678888876
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=1.1e-05 Score=67.77 Aligned_cols=99 Identities=21% Similarity=0.227 Sum_probs=67.5
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccccccccc-chhcCCCCCCCEee
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNI-SEALGIYPNLNYID 304 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ 304 (339)
.+.+.|++.||+++++ .....++.|+.|.|+-|.+++.-| +..|+.|++|.|..|.|.+.- ...+.++|+|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3556677777777652 344567788888888888874433 677888888888888776432 23456788888888
Q ss_pred cccccCcccCCc-----cccCCCCCCeEE
Q 036674 305 LSRNNFYGEISS-----NLGEYPKLGTLN 328 (339)
Q Consensus 305 L~~n~l~~~~~~-----~l~~l~~L~~L~ 328 (339)
|..|.-.|..+. .+..+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 888887655443 344577777765
No 65
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=0.00013 Score=71.11 Aligned_cols=135 Identities=14% Similarity=0.121 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCCCccccCCCC-CCCCCCCCEEeCCCCcCC-CCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcE
Q 036674 82 GRVVNISLPAKGLKGKLHDFS-FSSFPHLAYLDLSHNELF-GTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKF 159 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 159 (339)
.+++++++++...-..--+.. -..||.|+.|.+.+-.+. +.......++++|..||+++++++ .+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 356666666644322110112 234677777777765543 222333456677777777777766 23 55666777777
Q ss_pred EEeeccCCCC-CCCccccCCCCCcEEEeecCcCCCCC------CCCCCCCCCCceeecccccCccc
Q 036674 160 LYIDTNQLDG-SIPPEVGQLSSLVELFLFFNHLSGSV------PPSLGNLTNLQELILFCNNLSGS 218 (339)
Q Consensus 160 L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~------~~~l~~l~~L~~L~l~~n~l~~~ 218 (339)
|.+.+=.+.. ..-..+.++++|+.||++........ -+.-..++.|+.||.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7666544431 11123456677777777665443211 01122466777777777666543
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.21 E-value=8.9e-06 Score=71.90 Aligned_cols=251 Identities=16% Similarity=0.075 Sum_probs=126.3
Q ss_pred CCEEEEEcCCCCCccccC-CCCCCCCCCCCEEeCCCCc-CCCCCCccC-CCCCccCeeeccCCC-CcCcCch-hhcCCCC
Q 036674 82 GRVVNISLPAKGLKGKLH-DFSFSSFPHLAYLDLSHNE-LFGTIPPQI-SNLTNLSDLYLEGDQ-FSGNIPP-EVGLMSH 156 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~p~-~l~~l~~ 156 (339)
++++.+++.++.-.+.-. ...-.++|+++.|++.++. +++..-..+ ..+++|+++++..|. ++...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 678888888876544321 2234678999999998885 333222223 367889999998854 4432222 2357889
Q ss_pred CcEEEeeccCC-CCCC-CccccCCCCC--------------------------cEEEeecCc-CCCCCCC-CCCCCCCCc
Q 036674 157 LKFLYIDTNQL-DGSI-PPEVGQLSSL--------------------------VELFLFFNH-LSGSVPP-SLGNLTNLQ 206 (339)
Q Consensus 157 L~~L~l~~n~~-~~~~-p~~~~~l~~L--------------------------~~L~l~~n~-~~~~~~~-~l~~l~~L~ 206 (339)
|+++++++|.- .+.. .....++..+ ..+++.++. +++..-. .-..+.+|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999988743 2210 0111222222 233322221 1111000 012345677
Q ss_pred eeecccccCcc-cCCCCCCC--CCCcEEeCCCCC-CCCCCchhh-cCCCccceeeccccccCCC--chHhhhcCCCCcEE
Q 036674 207 ELILFCNNLSG-SIPPSLDN--PMLTRLDLDFNH-FTSYLPHNV-CRGGALQNFTVAENHFQGT--IPKSLRNCTSLIRV 279 (339)
Q Consensus 207 ~L~l~~n~l~~-~~~~~~~~--~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L 279 (339)
.+..+++...+ ..-..++. .+|+.+.+++++ ++...-..+ .+++.|+.+++..+..... +.+.-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 77776654321 11122222 677777777765 222111122 2456666666666544311 12222355666666
Q ss_pred Eccccc-cccccchhc----CCCCCCCEeecccccCc-ccCCccccCCCCCCeEEcccC
Q 036674 280 RVNGNN-LTGNISEAL----GIYPNLNYIDLSRNNFY-GEISSNLGEYPKLGTLNVSMN 332 (339)
Q Consensus 280 ~l~~n~-l~~~~~~~l----~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n 332 (339)
.++++. +++.....+ ..+..|+.+.+++++.+ ...-..+..+++|+.+++-++
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 666653 222211111 23455666666666643 233344555666666665554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00049 Score=57.55 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=65.6
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeecccc--ccCCCchHhhhcCCCCcEEEccccccccc-cchhcCCCCCCCE
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAEN--HFQGTIPKSLRNCTSLIRVRVNGNNLTGN-ISEALGIYPNLNY 302 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~ 302 (339)
..|+.+.+.+..++.. ..+..+++|+.|.++.| ...+.++-....+|+|+++++++|++... -...+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 5666666666666542 34456788889999988 55555555555668899999999987631 0112345677888
Q ss_pred eecccccCcccCC---ccccCCCCCCeEEc
Q 036674 303 IDLSRNNFYGEIS---SNLGEYPKLGTLNV 329 (339)
Q Consensus 303 L~L~~n~l~~~~~---~~l~~l~~L~~L~l 329 (339)
|++.+|..+..-. ..|.-+++|++||-
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccc
Confidence 8888887664111 13445677776653
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00081 Score=56.24 Aligned_cols=86 Identities=23% Similarity=0.330 Sum_probs=52.3
Q ss_pred CCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCC--CCcCcCchhhcCCCCCcEEEeeccCCCCCCCcc---ccCC
Q 036674 104 SSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGD--QFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPE---VGQL 178 (339)
Q Consensus 104 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~---~~~l 178 (339)
-.+..|+.+++.+..++ ++ ..+..+++|++|.++.| ++.+.++.....+++|+++++++|++.. +.. +..+
T Consensus 40 d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKEL 115 (260)
T ss_pred ccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhh
Confidence 34455666666666554 11 23556777888888877 5555555555566777777777777652 222 3455
Q ss_pred CCCcEEEeecCcCCC
Q 036674 179 SSLVELFLFFNHLSG 193 (339)
Q Consensus 179 ~~L~~L~l~~n~~~~ 193 (339)
.+|..|++.+|..+.
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 666667776666553
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.57 E-value=0.00015 Score=68.24 Aligned_cols=17 Identities=24% Similarity=0.512 Sum_probs=10.7
Q ss_pred hhcCCCCcEEEcccccc
Q 036674 270 LRNCTSLIRVRVNGNNL 286 (339)
Q Consensus 270 ~~~~~~L~~L~l~~n~l 286 (339)
...+++++.+.+.++..
T Consensus 358 ~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HhcCCCcchhhhhhhhc
Confidence 45666677766666653
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00018 Score=67.76 Aligned_cols=111 Identities=21% Similarity=0.094 Sum_probs=56.7
Q ss_pred CCCCCCEEeCCCCcCCCC--CCccCCCCCccCeeeccCC-CCcCcCc----hhhcCCCCCcEEEeeccC-CCCCCCcccc
Q 036674 105 SFPHLAYLDLSHNELFGT--IPPQISNLTNLSDLYLEGD-QFSGNIP----PEVGLMSHLKFLYIDTNQ-LDGSIPPEVG 176 (339)
Q Consensus 105 ~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~l~~n~-~~~~~p~~~~ 176 (339)
.++.|+.+.+.++.-... .......+++|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356677777666632212 2233456677777777662 2111111 223345667777777666 4433222222
Q ss_pred -CCCCCcEEEeecCc-CCCCCCC-CCCCCCCCceeecccccC
Q 036674 177 -QLSSLVELFLFFNH-LSGSVPP-SLGNLTNLQELILFCNNL 215 (339)
Q Consensus 177 -~l~~L~~L~l~~n~-~~~~~~~-~l~~l~~L~~L~l~~n~l 215 (339)
.+++|++|.+.++. +++..-. ....++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25677777766555 3322211 123456677777776654
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.0046 Score=30.97 Aligned_cols=18 Identities=50% Similarity=0.792 Sum_probs=8.7
Q ss_pred CCEeecccccCcccCCccc
Q 036674 300 LNYIDLSRNNFYGEISSNL 318 (339)
Q Consensus 300 L~~L~L~~n~l~~~~~~~l 318 (339)
|++|++++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 344433
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.65 E-value=5.6e-05 Score=70.38 Aligned_cols=180 Identities=22% Similarity=0.187 Sum_probs=89.9
Q ss_pred ccCeeeccCCCCcCcCc----hhhcCCCCCcEEEeeccCCCCCCC----ccccCC-CCCcEEEeecCcCCCCC----CCC
Q 036674 132 NLSDLYLEGDQFSGNIP----PEVGLMSHLKFLYIDTNQLDGSIP----PEVGQL-SSLVELFLFFNHLSGSV----PPS 198 (339)
Q Consensus 132 ~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~l~~n~~~~~~p----~~~~~l-~~L~~L~l~~n~~~~~~----~~~ 198 (339)
.+..+.+.+|.+..... ..+...+.|..|++++|.+.+... ..+... ..+++|++..|.+++.. ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37788888888774332 344567788888888888763321 122222 45666777766665432 233
Q ss_pred CCCCCCCceeecccccCcc----cCCCCCC----C-CCCcEEeCCCCCCCCC----CchhhcCCCc-cceeeccccccCC
Q 036674 199 LGNLTNLQELILFCNNLSG----SIPPSLD----N-PMLTRLDLDFNHFTSY----LPHNVCRGGA-LQNFTVAENHFQG 264 (339)
Q Consensus 199 l~~l~~L~~L~l~~n~l~~----~~~~~~~----~-~~L~~L~l~~n~l~~~----~~~~~~~~~~-L~~L~l~~n~l~~ 264 (339)
+.....++.++++.|.+.. .++..+. . .++++|++++|.++.. +...+...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 4445667777777776531 1111111 1 4555566655555421 1112222333 4445555555543
Q ss_pred Cc----hHhhhcC-CCCcEEEccccccccccc----hhcCCCCCCCEeecccccCc
Q 036674 265 TI----PKSLRNC-TSLIRVRVNGNNLTGNIS----EALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 265 ~~----~~~~~~~-~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~ 311 (339)
.. ...+... +.++++++++|.+++.-. ..+..++.++.+.++.|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 21 1122222 344555555555554222 22233445555555555554
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.51 E-value=0.00066 Score=60.44 Aligned_cols=228 Identities=18% Similarity=0.098 Sum_probs=121.3
Q ss_pred CCCEEeCCCCcCCCC--CCccCCCCCccCeeeccCCC-CcCcCchhh-cCCCCCcEEEeeccC-CCCCCCc-cccCCCCC
Q 036674 108 HLAYLDLSHNELFGT--IPPQISNLTNLSDLYLEGDQ-FSGNIPPEV-GLMSHLKFLYIDTNQ-LDGSIPP-EVGQLSSL 181 (339)
Q Consensus 108 ~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~l~~n~-~~~~~p~-~~~~l~~L 181 (339)
.|+.|.++++.-.+. +-..-.+++++++|.+.++. ++...-..+ ..+++|+++++..|. ++...-. -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 588999998864322 22334689999999999886 332222223 468999999998854 3322222 23468999
Q ss_pred cEEEeecCc-CCCCCC-CCCCCCCCCceeeccccc---------------------------CcccCCCCCC--CCCCcE
Q 036674 182 VELFLFFNH-LSGSVP-PSLGNLTNLQELILFCNN---------------------------LSGSIPPSLD--NPMLTR 230 (339)
Q Consensus 182 ~~L~l~~n~-~~~~~~-~~l~~l~~L~~L~l~~n~---------------------------l~~~~~~~~~--~~~L~~ 230 (339)
++|+++.+. +++..- .-..+++.++.+...+|. +++.--..+. ...|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 999998775 332111 112233344444444332 1100000000 034455
Q ss_pred EeCCCCCCC-CCCc-hhhcCCCccceeecccccc-CCCchHhh-hcCCCCcEEEccccccccc--cchhcCCCCCCCEee
Q 036674 231 LDLDFNHFT-SYLP-HNVCRGGALQNFTVAENHF-QGTIPKSL-RNCTSLIRVRVNGNNLTGN--ISEALGIYPNLNYID 304 (339)
Q Consensus 231 L~l~~n~l~-~~~~-~~~~~~~~L~~L~l~~n~l-~~~~~~~~-~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~ 304 (339)
++.+++.-. ...- ..-.+..+|+.+.++.++. +..--..+ .+++.|+.+++.++..... +...-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 555444321 1111 1123456777777776653 22211222 3456777777777643321 111113567888888
Q ss_pred cccccCcccC-----CccccCCCCCCeEEcccCcCc
Q 036674 305 LSRNNFYGEI-----SSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 305 L~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~lt 335 (339)
+++|.+..+. ...-.....|..+.+++++.+
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 8877754222 223345667788888887654
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.38 E-value=0.0058 Score=30.60 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=7.6
Q ss_pred cCeeeccCCCCcCcCchh
Q 036674 133 LSDLYLEGDQFSGNIPPE 150 (339)
Q Consensus 133 L~~L~L~~n~l~~~~p~~ 150 (339)
|++|++++|.++ .+|+.
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444444444444 34433
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.54 E-value=0.00012 Score=68.27 Aligned_cols=181 Identities=24% Similarity=0.217 Sum_probs=77.3
Q ss_pred EEEEEcCCCCCcccc---CCCCCCCCCCCCEEeCCCCcCCCC----CCccCCCC-CccCeeeccCCCCcC----cCchhh
Q 036674 84 VVNISLPAKGLKGKL---HDFSFSSFPHLAYLDLSHNELFGT----IPPQISNL-TNLSDLYLEGDQFSG----NIPPEV 151 (339)
Q Consensus 84 v~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~L~~n~l~~----~~p~~l 151 (339)
+..+.|.+|.+.... ....+...+.|+.|++++|.+.+. +-..+... ..+++|++..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 344455555544321 012344455566666666655422 11112222 345555555555542 223334
Q ss_pred cCCCCCcEEEeeccCCCC----CCCcccc----CCCCCcEEEeecCcCCCCC----CCCCCCCCC-CceeecccccCccc
Q 036674 152 GLMSHLKFLYIDTNQLDG----SIPPEVG----QLSSLVELFLFFNHLSGSV----PPSLGNLTN-LQELILFCNNLSGS 218 (339)
Q Consensus 152 ~~l~~L~~L~l~~n~~~~----~~p~~~~----~l~~L~~L~l~~n~~~~~~----~~~l~~l~~-L~~L~l~~n~l~~~ 218 (339)
.....++.++++.|.+.. .++..+. ...++++|.+.+|.++... ...+...+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445555555665555421 1112222 2445555555555544111 111222233 44455555554422
Q ss_pred C----CCCCCC--CCCcEEeCCCCCCCCCC----chhhcCCCccceeeccccccCC
Q 036674 219 I----PPSLDN--PMLTRLDLDFNHFTSYL----PHNVCRGGALQNFTVAENHFQG 264 (339)
Q Consensus 219 ~----~~~~~~--~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~ 264 (339)
. ...+.. ..++.++++.|.++... ...+..++.++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1 111111 34455555555554322 2233344555555555555543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.0056 Score=49.39 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=62.9
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCC-chHhh-hcCCCCcEEEcccc-ccccccchhcCCCCCCCE
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGT-IPKSL-RNCTSLIRVRVNGN-NLTGNISEALGIYPNLNY 302 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~ 302 (339)
..++.++-+++.+....-+.+..++.++.|.+.++.--+. --+.+ ...++|+.|++++| .|++....++..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 5688889888888877777888888888888888754321 11122 23478999999988 788777788888999999
Q ss_pred eeccccc
Q 036674 303 IDLSRNN 309 (339)
Q Consensus 303 L~L~~n~ 309 (339)
|.+.+=+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8887644
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=0.013 Score=47.34 Aligned_cols=80 Identities=10% Similarity=0.070 Sum_probs=36.5
Q ss_pred CCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCC-CCchhhc-CCCccceeecccc-ccCCCchHhhhcCCCCcEE
Q 036674 204 NLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTS-YLPHNVC-RGGALQNFTVAEN-HFQGTIPKSLRNCTSLIRV 279 (339)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~-~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L 279 (339)
.++.++-++..+....-..+.. +.++.|.+.+|.--+ ..-+.++ -.++|+.|++++| ++++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3455555555554333333333 555555555544211 1111111 2355666666654 3443344445555555555
Q ss_pred Eccc
Q 036674 280 RVNG 283 (339)
Q Consensus 280 ~l~~ 283 (339)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.38 E-value=0.0015 Score=53.76 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEE
Q 036674 81 VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFL 160 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (339)
..+++.||++.+.+... ...|+-++.+..|+++.|.+. -.|..+..+..++.+++..|..+ ..|.+++..+.++++
T Consensus 41 ~kr~tvld~~s~r~vn~--~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL--GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHHhh--ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 35667777766665432 234555666667777766665 45666666666777777666666 667777777777777
Q ss_pred EeeccCCC
Q 036674 161 YIDTNQLD 168 (339)
Q Consensus 161 ~l~~n~~~ 168 (339)
+...+.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77666654
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.96 E-value=0.061 Score=24.91 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=3.5
Q ss_pred cCeeeccCCCC
Q 036674 133 LSDLYLEGDQF 143 (339)
Q Consensus 133 L~~L~L~~n~l 143 (339)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.52 E-value=0.005 Score=50.87 Aligned_cols=85 Identities=11% Similarity=0.091 Sum_probs=41.0
Q ss_pred CCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeE
Q 036674 248 RGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTL 327 (339)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 327 (339)
.....+.||++.|++.. .-..|+-++.+..++++.|++. ..|.-++....+.++++..|... ..|.+++..|.++.+
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 33444555555554441 1122333344455555555554 44444444444555555555554 445555555555555
Q ss_pred EcccCcCc
Q 036674 328 NVSMNNIT 335 (339)
Q Consensus 328 ~l~~n~lt 335 (339)
++.+|.|+
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 55555543
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.47 E-value=0.12 Score=26.22 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=5.3
Q ss_pred CCcEEEcccccccc
Q 036674 275 SLIRVRVNGNNLTG 288 (339)
Q Consensus 275 ~L~~L~l~~n~l~~ 288 (339)
+|++|++++|++++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 44444444444443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.13 E-value=0.36 Score=24.96 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=5.6
Q ss_pred CCCEeecccccCc
Q 036674 299 NLNYIDLSRNNFY 311 (339)
Q Consensus 299 ~L~~L~L~~n~l~ 311 (339)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.13 E-value=0.36 Score=24.96 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=5.6
Q ss_pred CCCEeecccccCc
Q 036674 299 NLNYIDLSRNNFY 311 (339)
Q Consensus 299 ~L~~L~L~~n~l~ 311 (339)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.92 E-value=1.8 Score=22.58 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=8.4
Q ss_pred CCCCeEEcccCcCc
Q 036674 322 PKLGTLNVSMNNIT 335 (339)
Q Consensus 322 ~~L~~L~l~~n~lt 335 (339)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666654
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.26 E-value=1.4 Score=23.27 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=7.9
Q ss_pred CCCCeEEcccCcCc
Q 036674 322 PKLGTLNVSMNNIT 335 (339)
Q Consensus 322 ~~L~~L~l~~n~lt 335 (339)
++|+.|||++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34556666666553
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.64 E-value=2.2 Score=22.18 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=10.6
Q ss_pred CCCCEeecccccCcccCC
Q 036674 298 PNLNYIDLSRNNFYGEIS 315 (339)
Q Consensus 298 ~~L~~L~L~~n~l~~~~~ 315 (339)
++|+.|++++|+++ .+|
T Consensus 2 ~~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLT-SLP 18 (26)
T ss_pred cccceeecCCCccc-cCc
Confidence 35667777777766 344
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.57 E-value=2.2 Score=40.19 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=41.2
Q ss_pred CCCccceeeccccccCCC--chHhhhcCCCCcEEEccccccccccchhcCC--CCCCCEeecccccCcc
Q 036674 248 RGGALQNFTVAENHFQGT--IPKSLRNCTSLIRVRVNGNNLTGNISEALGI--YPNLNYIDLSRNNFYG 312 (339)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--~~~L~~L~L~~n~l~~ 312 (339)
+.+.+..+.|++|++... +...-...|+|+.|+|++|...-....++.+ ...|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456778888999887632 2222244588999999998322122223333 3467889999998864
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.46 E-value=2.4 Score=39.89 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=46.5
Q ss_pred CCCcEEeCCCCCCCCC--CchhhcCCCccceeecccc--ccCCCchHhhh--cCCCCcEEEccccccccccch-------
Q 036674 226 PMLTRLDLDFNHFTSY--LPHNVCRGGALQNFTVAEN--HFQGTIPKSLR--NCTSLIRVRVNGNNLTGNISE------- 292 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~------- 292 (339)
+.+..+.+++|++... +...-...|+|..|+|++| .+... ..+. ....|++|.+.+|.+......
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 6778888888887542 2223334688889999988 33321 1122 235678888888887643221
Q ss_pred hcCCCCCCCEee
Q 036674 293 ALGIYPNLNYID 304 (339)
Q Consensus 293 ~l~~~~~L~~L~ 304 (339)
.-..+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 113467777665
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.32 E-value=9.3 Score=19.54 Aligned_cols=12 Identities=50% Similarity=0.678 Sum_probs=8.4
Q ss_pred CCCCEeeccccc
Q 036674 298 PNLNYIDLSRNN 309 (339)
Q Consensus 298 ~~L~~L~L~~n~ 309 (339)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777775
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=46.30 E-value=21 Score=33.29 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=6.2
Q ss_pred CCcEEEeeccCCC
Q 036674 156 HLKFLYIDTNQLD 168 (339)
Q Consensus 156 ~L~~L~l~~n~~~ 168 (339)
.+++++++.|.+.
T Consensus 166 r~r~~dls~npi~ 178 (553)
T KOG4242|consen 166 RARQHDLSPNPIG 178 (553)
T ss_pred hhhhhccCCCccc
Confidence 3445555555443
No 91
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=36.35 E-value=69 Score=20.40 Aligned_cols=22 Identities=9% Similarity=0.288 Sum_probs=13.7
Q ss_pred CCCcccchhHHHHHHHHHHHHH
Q 036674 1 MGSRTLNTVVPSLVLLILFFVL 22 (339)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (339)
|+||+.-.|.++++++.++++|
T Consensus 1 ~r~k~~~~mtriVLLISfiIlf 22 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLISFIILF 22 (59)
T ss_pred CCCcccchHHHHHHHHHHHHHH
Confidence 6777777777777665444333
No 92
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=36.27 E-value=43 Score=27.86 Aligned_cols=9 Identities=22% Similarity=-0.023 Sum_probs=3.3
Q ss_pred Cceeecccc
Q 036674 205 LQELILFCN 213 (339)
Q Consensus 205 L~~L~l~~n 213 (339)
|+-.++.++
T Consensus 218 LeganLkG~ 226 (302)
T KOG1665|consen 218 LEGANLKGA 226 (302)
T ss_pred ccccccccc
Confidence 333333333
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=29.53 E-value=45 Score=31.23 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=17.0
Q ss_pred CCCCCcEEEeecCcCCCCCCCCC
Q 036674 177 QLSSLVELFLFFNHLSGSVPPSL 199 (339)
Q Consensus 177 ~l~~L~~L~l~~n~~~~~~~~~l 199 (339)
.-+.+++++++.|.+....|..+
T Consensus 163 pnpr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred CcchhhhhccCCCcccccCCccc
Confidence 44678899999998876665544
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.74 E-value=39 Score=38.71 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=29.5
Q ss_pred eccccccCCCchHhhhcCCCCcEEEcccccccc
Q 036674 256 TVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTG 288 (339)
Q Consensus 256 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 288 (339)
||++|+++...+..|..+++|++|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999998888889999999999999998875
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.97 E-value=71 Score=36.87 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=30.0
Q ss_pred eCCCCCCCCCCchhhcCCCccceeeccccccCCC
Q 036674 232 DLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGT 265 (339)
Q Consensus 232 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 265 (339)
+|++|+|+...+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5789999988888899999999999999998743
Done!