Query 036674
Match_columns 339
No_of_seqs 302 out of 4414
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 06:47:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-45 1.6E-49 323.1 16.9 295 30-336 2-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 8.7E-42 3E-46 336.5 19.4 299 26-339 4-335 (768)
3 4eco_A Uncharacterized protein 100.0 1E-40 3.6E-45 322.1 13.8 293 30-335 26-446 (636)
4 3rgz_A Protein brassinosteroid 100.0 1.4E-37 4.7E-42 306.6 20.3 257 82-339 394-721 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 1.1E-37 3.8E-42 307.1 16.6 273 29-315 264-661 (876)
6 4fcg_A Uncharacterized protein 100.0 3.5E-36 1.2E-40 267.8 15.7 272 29-309 22-312 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 3E-34 1E-38 266.6 24.2 257 83-339 55-412 (455)
8 3v47_A TOLL-like receptor 5B a 100.0 2.3E-34 7.9E-39 267.4 22.1 255 82-337 30-386 (455)
9 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-35 7.8E-40 260.9 12.7 231 107-339 50-285 (313)
10 2id5_A Lingo-1, leucine rich r 100.0 5.8E-32 2E-36 252.8 22.8 252 83-335 33-333 (477)
11 2id5_A Lingo-1, leucine rich r 100.0 2.1E-32 7.2E-37 255.8 19.6 230 107-336 32-310 (477)
12 2z80_A TOLL-like receptor 2, v 100.0 1.6E-32 5.3E-37 246.9 17.3 256 82-339 52-318 (353)
13 1xku_A Decorin; proteoglycan, 100.0 1.9E-31 6.6E-36 237.5 24.2 261 68-335 28-306 (330)
14 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-31 8.9E-36 236.9 24.5 259 69-335 31-307 (332)
15 2z66_A Variable lymphocyte rec 100.0 3.4E-32 1.2E-36 239.8 16.7 253 69-337 5-263 (306)
16 3zyi_A Leucine-rich repeat-con 100.0 6.3E-31 2.2E-35 244.1 24.3 228 107-336 75-304 (452)
17 3t6q_A CD180 antigen; protein- 100.0 4E-31 1.4E-35 254.2 23.6 253 83-338 255-539 (606)
18 3oja_B Anopheles plasmodium-re 100.0 1.4E-31 4.7E-36 256.8 18.8 249 83-336 52-338 (597)
19 3t6q_A CD180 antigen; protein- 100.0 4.2E-31 1.4E-35 254.1 22.2 254 83-338 302-563 (606)
20 4fcg_A Uncharacterized protein 100.0 2.5E-31 8.5E-36 236.4 18.6 226 105-335 79-314 (328)
21 3o6n_A APL1; leucine-rich repe 100.0 2.3E-31 7.8E-36 242.5 18.0 248 83-335 46-331 (390)
22 3zyj_A Leucine-rich repeat-con 100.0 1.1E-30 3.9E-35 241.6 21.5 228 107-336 64-293 (440)
23 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-31 1.5E-35 250.9 18.8 142 82-224 26-169 (549)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-31 1.2E-35 252.5 17.7 248 82-335 52-463 (562)
25 4eco_A Uncharacterized protein 100.0 1.8E-31 6.2E-36 257.6 13.9 253 81-339 205-529 (636)
26 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-30 1.3E-34 243.1 22.4 103 82-191 45-150 (520)
27 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-30 1.3E-34 247.4 22.3 109 83-192 57-166 (606)
28 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-30 7.3E-35 252.4 19.5 248 82-330 25-304 (680)
29 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-30 9E-35 257.2 20.4 254 84-337 50-353 (844)
30 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-29 3.9E-34 252.6 23.5 254 82-336 73-376 (844)
31 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-29 4.6E-34 221.0 20.6 250 85-339 14-265 (285)
32 3o6n_A APL1; leucine-rich repe 100.0 8.2E-30 2.8E-34 232.2 20.0 246 82-336 69-353 (390)
33 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-29 4.7E-34 225.8 20.0 244 83-337 34-279 (332)
34 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-29 9E-34 237.3 22.9 105 83-191 22-127 (520)
35 1xku_A Decorin; proteoglycan, 100.0 1.9E-29 6.7E-34 224.6 20.7 244 83-337 32-278 (330)
36 3zyi_A Leucine-rich repeat-con 100.0 1.5E-29 5.1E-34 234.9 19.6 228 82-311 75-303 (452)
37 3oja_B Anopheles plasmodium-re 100.0 1.3E-29 4.4E-34 243.1 19.6 248 82-337 75-360 (597)
38 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-29 1.7E-33 240.4 23.9 133 83-216 53-186 (635)
39 1ozn_A Reticulon 4 receptor; N 100.0 1E-29 3.5E-34 221.7 17.2 249 82-332 32-284 (285)
40 4ecn_A Leucine-rich repeat pro 100.0 1.3E-29 4.4E-34 249.8 18.7 248 81-336 447-767 (876)
41 2z66_A Variable lymphocyte rec 100.0 1.3E-30 4.4E-35 229.8 10.2 230 82-313 28-263 (306)
42 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-28 3.5E-33 235.4 23.5 252 80-339 74-489 (562)
43 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-29 3.8E-34 244.2 16.1 248 83-338 308-561 (606)
44 2z63_A TOLL-like receptor 4, v 100.0 8.5E-29 2.9E-33 236.2 21.7 114 226-339 421-535 (570)
45 3zyj_A Leucine-rich repeat-con 100.0 5.2E-29 1.8E-33 230.5 19.3 228 82-311 64-292 (440)
46 1wwl_A Monocyte differentiatio 100.0 1.2E-31 4.2E-36 236.9 -0.3 245 82-337 43-311 (312)
47 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-28 1.9E-32 235.4 24.3 249 87-339 9-289 (680)
48 2z63_A TOLL-like receptor 4, v 100.0 2.7E-28 9.3E-33 232.7 19.5 133 83-216 29-162 (570)
49 4fmz_A Internalin; leucine ric 100.0 9.1E-28 3.1E-32 215.2 21.6 238 82-337 66-326 (347)
50 4fmz_A Internalin; leucine ric 100.0 1.5E-27 5E-32 213.8 21.9 238 81-335 87-346 (347)
51 2z81_A CD282 antigen, TOLL-lik 100.0 1E-28 3.5E-33 234.7 14.9 252 81-335 49-423 (549)
52 2z80_A TOLL-like receptor 2, v 100.0 3.8E-28 1.3E-32 218.2 17.6 258 67-339 26-293 (353)
53 2o6q_A Variable lymphocyte rec 100.0 2E-27 6.7E-32 205.6 20.8 218 68-289 2-220 (270)
54 2z62_A TOLL-like receptor 4, v 100.0 2.6E-27 8.8E-32 205.5 18.9 208 107-337 28-239 (276)
55 3o53_A Protein LRIM1, AGAP0063 100.0 7.4E-29 2.5E-33 219.6 8.0 237 84-335 12-250 (317)
56 1o6v_A Internalin A; bacterial 100.0 8.6E-27 2.9E-31 217.1 22.2 235 82-336 68-323 (466)
57 4g8a_A TOLL-like receptor 4; l 100.0 8.5E-27 2.9E-31 224.8 22.7 111 81-192 75-186 (635)
58 1o6v_A Internalin A; bacterial 99.9 1.5E-26 5E-31 215.6 21.4 239 81-337 89-368 (466)
59 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-26 7.8E-31 213.3 22.3 232 82-339 42-303 (457)
60 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-29 1.1E-33 221.8 2.8 242 82-338 34-279 (317)
61 3oja_A Leucine-rich immune mol 99.9 4.2E-28 1.4E-32 226.8 9.9 233 83-330 35-270 (487)
62 2o6q_A Variable lymphocyte rec 99.9 8E-26 2.7E-30 195.5 22.1 203 107-312 16-219 (270)
63 3oja_A Leucine-rich immune mol 99.9 3.6E-28 1.2E-32 227.2 7.3 220 102-335 29-250 (487)
64 3bz5_A Internalin-J, INLJ; leu 99.9 5E-26 1.7E-30 211.0 20.8 231 83-336 86-332 (457)
65 1wwl_A Monocyte differentiatio 99.9 2.8E-28 9.4E-33 215.4 4.9 227 103-337 39-289 (312)
66 3rfs_A Internalin B, repeat mo 99.9 1.1E-26 3.7E-31 201.2 13.7 222 88-323 25-247 (272)
67 3rfs_A Internalin B, repeat mo 99.9 5.1E-26 1.8E-30 196.9 16.9 206 82-299 41-247 (272)
68 2z62_A TOLL-like receptor 4, v 99.9 4.1E-26 1.4E-30 197.9 14.9 206 82-289 28-239 (276)
69 1p9a_G Platelet glycoprotein I 99.9 1.5E-25 5.2E-30 195.6 18.1 204 101-311 4-208 (290)
70 1p9a_G Platelet glycoprotein I 99.9 8.8E-25 3E-29 190.8 19.4 203 78-288 6-209 (290)
71 2ast_B S-phase kinase-associat 99.9 2.8E-28 9.5E-33 217.5 -4.2 262 68-339 34-310 (336)
72 1jl5_A Outer protein YOPM; leu 99.9 1.7E-24 6E-29 200.4 20.3 233 83-339 132-415 (454)
73 2ca6_A RAN GTPase-activating p 99.9 2E-27 6.7E-32 216.2 -1.5 237 102-338 27-319 (386)
74 3goz_A Leucine-rich repeat-con 99.9 1.2E-26 4.2E-31 209.1 2.6 251 86-337 2-299 (362)
75 4glp_A Monocyte differentiatio 99.9 6.7E-25 2.3E-29 193.5 13.5 225 107-337 64-309 (310)
76 3g06_A SSPH2 (leucine-rich rep 99.9 7.2E-24 2.5E-28 202.5 21.0 223 83-339 62-301 (622)
77 1jl5_A Outer protein YOPM; leu 99.9 6.2E-25 2.1E-29 203.5 13.0 231 82-336 11-271 (454)
78 1h6u_A Internalin H; cell adhe 99.9 4.5E-24 1.5E-28 188.0 16.8 189 82-287 41-230 (308)
79 2xwt_C Thyrotropin receptor; s 99.9 3.9E-24 1.3E-28 181.5 15.1 196 108-332 32-236 (239)
80 1h6u_A Internalin H; cell adhe 99.9 4.7E-24 1.6E-28 187.9 16.0 195 102-312 36-231 (308)
81 3m19_A Variable lymphocyte rec 99.9 1.6E-23 5.4E-28 179.1 18.0 180 131-313 14-194 (251)
82 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-23 5.6E-28 200.0 18.6 236 67-339 18-277 (622)
83 2xwt_C Thyrotropin receptor; s 99.9 1.5E-23 5.3E-28 177.8 15.3 196 82-284 31-236 (239)
84 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-26 3.9E-31 215.9 -5.4 253 83-336 86-412 (461)
85 3m19_A Variable lymphocyte rec 99.9 7.1E-23 2.4E-27 175.0 18.4 179 108-289 15-194 (251)
86 4glp_A Monocyte differentiatio 99.9 6.6E-24 2.3E-28 187.1 11.7 224 83-312 65-308 (310)
87 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-26 5.5E-31 214.9 -6.1 232 105-336 168-441 (461)
88 2ca6_A RAN GTPase-activating p 99.9 2.2E-25 7.5E-30 202.7 0.4 234 82-315 32-320 (386)
89 2ast_B S-phase kinase-associat 99.9 1.4E-24 4.7E-29 193.6 1.8 224 108-336 48-285 (336)
90 4ay9_X Follicle-stimulating ho 99.9 2.9E-22 1E-26 179.6 16.8 243 70-332 8-256 (350)
91 2o6s_A Variable lymphocyte rec 99.9 1.1E-21 3.6E-26 162.8 17.6 185 68-274 4-189 (208)
92 3goz_A Leucine-rich repeat-con 99.9 3.6E-24 1.2E-28 192.9 2.4 225 111-335 2-266 (362)
93 2o6s_A Variable lymphocyte rec 99.9 1E-21 3.6E-26 162.9 15.7 180 110-322 10-189 (208)
94 3cvr_A Invasion plasmid antige 99.9 2.5E-21 8.6E-26 182.9 15.9 187 108-321 60-253 (571)
95 3cvr_A Invasion plasmid antige 99.9 1.9E-21 6.4E-26 183.8 14.6 197 72-297 49-253 (571)
96 4ay9_X Follicle-stimulating ho 99.8 4E-20 1.4E-24 165.7 15.9 222 110-339 12-240 (350)
97 1h6t_A Internalin B; cell adhe 99.8 3.1E-20 1.1E-24 162.0 14.3 188 109-312 26-214 (291)
98 1m9s_A Internalin B; cell inva 99.8 2.4E-20 8.2E-25 177.9 14.4 185 88-289 27-212 (605)
99 1h6t_A Internalin B; cell adhe 99.8 3.1E-20 1.1E-24 162.1 13.4 187 88-291 30-217 (291)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 5.9E-20 2E-24 153.6 14.4 151 158-311 14-166 (220)
101 2v9t_B SLIT homolog 2 protein 99.8 8.6E-20 2.9E-24 152.6 14.6 151 158-311 14-165 (220)
102 1m9s_A Internalin B; cell inva 99.8 5.6E-20 1.9E-24 175.4 15.1 169 82-265 43-212 (605)
103 2xot_A Amphoterin-induced prot 99.8 3.5E-20 1.2E-24 166.8 11.5 175 134-311 21-202 (361)
104 4b8c_D Glucose-repressible alc 99.8 3.3E-21 1.1E-25 188.1 5.1 260 32-311 130-404 (727)
105 3e6j_A Variable lymphocyte rec 99.8 2.4E-19 8.2E-24 150.9 15.5 158 67-240 15-173 (229)
106 3e6j_A Variable lymphocyte rec 99.8 3.1E-19 1.1E-23 150.2 15.3 155 156-314 20-175 (229)
107 2v9t_B SLIT homolog 2 protein 99.8 3.8E-19 1.3E-23 148.7 14.2 153 134-289 14-167 (220)
108 2xot_A Amphoterin-induced prot 99.8 3.3E-19 1.1E-23 160.4 14.6 176 86-265 22-204 (361)
109 4ezg_A Putative uncharacterize 99.8 1.5E-19 5.3E-24 148.5 11.3 154 152-336 41-195 (197)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 5.8E-19 2E-23 147.6 14.2 155 134-291 14-170 (220)
111 4ezg_A Putative uncharacterize 99.8 4.2E-19 1.4E-23 145.9 12.9 155 127-311 40-194 (197)
112 3ogk_B Coronatine-insensitive 99.8 5E-21 1.7E-25 183.3 -0.0 234 103-337 266-528 (592)
113 1xeu_A Internalin C; cellular 99.8 2.6E-19 8.8E-24 153.9 10.7 170 105-289 17-187 (263)
114 1dce_A Protein (RAB geranylger 99.8 2.8E-22 9.6E-27 190.1 -9.5 194 128-328 346-566 (567)
115 3ogk_B Coronatine-insensitive 99.8 6E-21 2.1E-25 182.8 -2.3 111 226-336 378-502 (592)
116 1dce_A Protein (RAB geranylger 99.8 3.1E-22 1E-26 189.8 -11.3 196 103-305 345-567 (567)
117 1xeu_A Internalin C; cellular 99.8 3.8E-19 1.3E-23 152.8 7.0 171 129-313 17-187 (263)
118 1w8a_A SLIT protein; signaling 99.8 4.1E-18 1.4E-22 139.3 12.2 131 206-338 11-142 (192)
119 4b8c_D Glucose-repressible alc 99.7 7.6E-19 2.6E-23 171.4 4.4 217 107-335 173-404 (727)
120 2ell_A Acidic leucine-rich nuc 99.7 4.1E-17 1.4E-21 130.3 11.4 131 179-334 24-159 (168)
121 2o6r_A Variable lymphocyte rec 99.7 6.2E-17 2.1E-21 130.4 12.4 130 206-337 10-139 (177)
122 2je0_A Acidic leucine-rich nuc 99.7 5.3E-17 1.8E-21 127.0 10.5 127 203-331 17-149 (149)
123 2ell_A Acidic leucine-rich nuc 99.7 1E-16 3.5E-21 128.0 11.9 134 153-311 22-160 (168)
124 2wfh_A SLIT homolog 2 protein 99.7 1.5E-16 5.2E-21 130.0 13.1 128 206-336 13-140 (193)
125 1w8a_A SLIT protein; signaling 99.7 4.6E-16 1.6E-20 127.1 13.7 107 108-214 30-137 (192)
126 2p1m_B Transport inhibitor res 99.7 2E-19 7E-24 172.1 -7.3 206 129-336 287-520 (594)
127 3sb4_A Hypothetical leucine ri 99.7 3.8E-17 1.3E-21 145.0 7.3 102 226-329 226-328 (329)
128 2je0_A Acidic leucine-rich nuc 99.7 2E-16 6.8E-21 123.7 9.2 127 179-307 17-149 (149)
129 2p1m_B Transport inhibitor res 99.7 4.3E-19 1.5E-23 169.9 -8.4 255 81-336 155-495 (594)
130 2wfh_A SLIT homolog 2 protein 99.6 3.6E-15 1.2E-19 121.8 14.2 106 108-214 32-137 (193)
131 2o6r_A Variable lymphocyte rec 99.6 9.1E-15 3.1E-19 117.7 14.3 104 110-216 10-113 (177)
132 4fdw_A Leucine rich hypothetic 99.6 2.4E-14 8.1E-19 130.1 17.9 222 100-332 129-355 (401)
133 1a9n_A U2A', U2A'; complex (nu 99.6 8.5E-16 2.9E-20 123.7 7.1 132 174-311 14-153 (176)
134 4fdw_A Leucine rich hypothetic 99.6 4.4E-14 1.5E-18 128.3 18.2 240 83-334 136-382 (401)
135 1ds9_A Outer arm dynein; leuci 99.6 1.3E-17 4.3E-22 137.1 -5.5 134 151-289 14-155 (198)
136 3sb4_A Hypothetical leucine ri 99.6 1.6E-15 5.6E-20 134.4 7.3 221 82-305 49-328 (329)
137 3g39_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 116.6 10.2 106 205-312 11-116 (170)
138 1ds9_A Outer arm dynein; leuci 99.6 4.7E-17 1.6E-21 133.6 -4.5 149 127-280 14-180 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-14 4.2E-19 116.8 9.8 131 151-287 15-153 (176)
140 2r9u_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 113.5 10.2 105 206-312 15-119 (174)
141 3g39_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 107.5 12.2 103 86-192 13-115 (170)
142 2r9u_A Variable lymphocyte rec 99.4 7.7E-13 2.6E-17 106.0 12.1 104 85-192 15-118 (174)
143 3un9_A NLR family member X1; l 99.4 2.4E-15 8.2E-20 135.3 -3.2 182 154-335 71-283 (372)
144 3un9_A NLR family member X1; l 99.4 3.9E-15 1.3E-19 134.0 -6.7 182 130-311 71-283 (372)
145 2ifg_A High affinity nerve gro 99.4 2.3E-12 7.8E-17 114.9 10.1 101 208-311 13-116 (347)
146 2ifg_A High affinity nerve gro 99.3 5.3E-12 1.8E-16 112.6 9.5 108 71-193 8-117 (347)
147 2ra8_A Uncharacterized protein 99.1 3.2E-11 1.1E-15 107.7 3.8 198 131-333 107-341 (362)
148 4fs7_A Uncharacterized protein 99.1 2.5E-09 8.6E-14 96.9 16.1 219 102-332 157-376 (394)
149 2ra8_A Uncharacterized protein 99.1 3.1E-11 1E-15 107.8 3.1 82 226-309 252-341 (362)
150 4fs7_A Uncharacterized protein 99.0 5.4E-09 1.8E-13 94.7 16.4 231 82-327 162-393 (394)
151 4gt6_A Cell surface protein; l 99.0 1.2E-08 4.1E-13 92.4 17.7 242 84-333 66-368 (394)
152 4gt6_A Cell surface protein; l 98.9 9.7E-08 3.3E-12 86.4 16.9 131 197-334 259-390 (394)
153 1io0_A Tropomodulin; LRR prote 98.8 3.2E-09 1.1E-13 85.6 3.5 110 226-335 36-164 (185)
154 4h09_A Hypothetical leucine ri 98.7 6.3E-07 2.2E-11 80.5 18.0 102 226-330 240-341 (379)
155 3rw6_A Nuclear RNA export fact 98.6 2.1E-08 7.3E-13 85.1 3.0 81 247-328 167-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.5 6.5E-09 2.2E-13 83.8 -0.6 86 226-311 65-164 (185)
157 3e4g_A ATP synthase subunit S, 98.5 5.9E-08 2E-12 76.6 3.3 91 219-309 53-150 (176)
158 3rw6_A Nuclear RNA export fact 98.5 1.4E-07 4.8E-12 80.1 5.2 77 226-304 170-257 (267)
159 4h09_A Hypothetical leucine ri 98.4 1E-05 3.5E-10 72.6 17.2 146 174-324 212-358 (379)
160 3e4g_A ATP synthase subunit S, 98.4 1.4E-07 4.7E-12 74.5 4.2 84 250-333 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.2E-05 4.1E-10 64.6 3.9 108 226-333 41-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 0.0001 3.5E-09 59.2 4.4 89 244-332 35-136 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00052 1.8E-08 51.3 5.7 55 254-310 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0017 5.8E-08 48.5 4.3 57 229-287 11-68 (130)
165 2lz0_A Uncharacterized protein 63.2 8 0.00027 26.7 3.8 48 236-284 6-53 (100)
166 2lz0_A Uncharacterized protein 55.9 21 0.00073 24.5 5.0 12 103-114 16-27 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.8e-45 Score=323.05 Aligned_cols=295 Identities=28% Similarity=0.459 Sum_probs=271.9
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcCCCcccCCCCCCCCCCCCc--ccceEeCCC---CCEEEEEcCCCCCcc--ccCCCC
Q 036674 30 SESNEEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCA--WYGISCNDV---GRVVNISLPAKGLKG--KLHDFS 102 (339)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~--~~gv~c~~~---~~v~~l~l~~~~~~~--~~~~~~ 102 (339)
.|.++|++||++||+++. ++. .+.+| .. +.++|. |.||.|+.. ++|+.++++++.+.+ .+ +..
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W--~~-----~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~-~~~ 71 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSW--LP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-PSS 71 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTC--CT-----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC-CGG
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCC--CC-----CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc-Chh
Confidence 578899999999999994 454 78889 33 457888 999999754 799999999999998 77 778
Q ss_pred CCCCCCCCEEeCCC-CcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCC
Q 036674 103 FSSFPHLAYLDLSH-NELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSL 181 (339)
Q Consensus 103 ~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 181 (339)
+.++++|++|++++ |.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 99999999999995 99998999999999999999999999998999999999999999999999999999999999999
Q ss_pred cEEEeecCcCCCCCCCCCCCCC-CCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeecccc
Q 036674 182 VELFLFFNHLSGSVPPSLGNLT-NLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAEN 260 (339)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 260 (339)
++|++++|.+.+.+|..+..++ +|++|++++|.+++..|..+....|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 9999999999988999999998 999999999999999998888845999999999999989999999999999999999
Q ss_pred ccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCc-Ccc
Q 036674 261 HFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNN-ITG 336 (339)
Q Consensus 261 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-lt~ 336 (339)
.+++.+|. +..+++|++|++++|++++.+|.++..+++|++|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 232 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 99977766 788999999999999999999999999999999999999999999886 889999999999997 655
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.7e-42 Score=336.53 Aligned_cols=299 Identities=27% Similarity=0.402 Sum_probs=198.2
Q ss_pred HhccCCCHHHHHHHHHHHHhcccCCCCcCCCcccCCCCCCCCCCCCcccceEeCCCCCEEEEEcCCCCCccc---cCC--
Q 036674 26 ITVSSESNEEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGK---LHD-- 100 (339)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~---~~~-- 100 (339)
.+++++..+|++||++||+++. ||. .+++| .. +.+||.|.||.|+ .++|+.++|+++.+.|. +++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W--~~-----~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l 73 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP-DKN-LLPDW--SS-----NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSL 73 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS-CTT-SSTTC--CT-----TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHT
T ss_pred CccccCCHHHHHHHHHHHhhCC-Ccc-cccCC--CC-----CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhH
Confidence 3445557789999999999996 666 88999 33 6789999999998 68999999999998886 411
Q ss_pred --------------------CCCCCCCCCCEEeCCCCcCCCCCCc--cCCCCCccCeeeccCCCCcCcCchhh-cCCCCC
Q 036674 101 --------------------FSFSSFPHLAYLDLSHNELFGTIPP--QISNLTNLSDLYLEGDQFSGNIPPEV-GLMSHL 157 (339)
Q Consensus 101 --------------------~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L 157 (339)
..++++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|
T Consensus 74 ~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred hccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 3566677777777777777666666 67777777777777777666665544 566777
Q ss_pred cEEEeeccCCCCCCCcc---ccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeC
Q 036674 158 KFLYIDTNQLDGSIPPE---VGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDL 233 (339)
Q Consensus 158 ~~L~l~~n~~~~~~p~~---~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l 233 (339)
++|++++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+++..|. +.. ++|++|++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 230 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEEC
Confidence 77777777766555544 55666666666666666544432 5667777777777777765555 444 77777777
Q ss_pred CCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCC-CCCCEeecccccCcc
Q 036674 234 DFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIY-PNLNYIDLSRNNFYG 312 (339)
Q Consensus 234 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~L~~n~l~~ 312 (339)
++|.+++..|..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|++++
T Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence 777777767777777777777777776666544432 44555555555555555555444432 555555555555555
Q ss_pred cCCccccCCCCCCeEEcccCcCcccCC
Q 036674 313 EISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 313 ~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
.+|..++.+++|+.|++++|+++|.+|
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred ccchHHhcCCCccEEECCCCcccCcCC
Confidence 555555555555555555555555444
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-40 Score=322.09 Aligned_cols=293 Identities=22% Similarity=0.279 Sum_probs=230.7
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcC-------CCcccCCCCCCCCCCCCcc---cceEeCCCCCEEEEEcCCCCCccccC
Q 036674 30 SESNEEADALLKWKASLQIHNRSLL-------SSWIKDTTNVSSKTSPCAW---YGISCNDVGRVVNISLPAKGLKGKLH 99 (339)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~~~~~~~-------~~w~~~~~~~~~~~~~c~~---~gv~c~~~~~v~~l~l~~~~~~~~~~ 99 (339)
+....|.+||.+++.++.++.|... .+| +. +.++|.| .||.|+..++|+.|+|+++++.|.+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W--~~-----~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l- 97 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW--NF-----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV- 97 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCC--CC-----SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE-
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCC--CC-----CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC-
Confidence 3445789999999999877666533 367 32 6789999 9999987799999999999999999
Q ss_pred CCCCCCCCCCCEEeCCCCcC------------------------------------------------------------
Q 036674 100 DFSFSSFPHLAYLDLSHNEL------------------------------------------------------------ 119 (339)
Q Consensus 100 ~~~~~~l~~L~~L~l~~n~~------------------------------------------------------------ 119 (339)
+..++++++|++|++++|.+
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 78999999999999999843
Q ss_pred ------------------CCCCCccCCCCCccCeeeccCCCCcCc-----------------Cchhhc--CCCCCcEEEe
Q 036674 120 ------------------FGTIPPQISNLTNLSDLYLEGDQFSGN-----------------IPPEVG--LMSHLKFLYI 162 (339)
Q Consensus 120 ------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~l 162 (339)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence 33 778899999999999999999975 899988 9999999999
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCc-CCC-CCCCCCCCC------CCCceeecccccCcccCCC--CCCC-CCCcEE
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNH-LSG-SVPPSLGNL------TNLQELILFCNNLSGSIPP--SLDN-PMLTRL 231 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~~~~-~~L~~L 231 (339)
++|.+.+.+|..++++++|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+.. ++|++|
T Consensus 257 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGML 335 (636)
T ss_dssp ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEE
T ss_pred cCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEE
Confidence 9999999999999999999999999998 887 677766665 78888888888887 7777 5666 788888
Q ss_pred eCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCC-CcEEEccccccccccchhcCCCC--CCCEeecccc
Q 036674 232 DLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTS-LIRVRVNGNNLTGNISEALGIYP--NLNYIDLSRN 308 (339)
Q Consensus 232 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~L~~n 308 (339)
++++|.+++.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|
T Consensus 336 ~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred eCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC
Confidence 888888876677 6777777777777777777 66666777777 777777777776 5555554433 6666666666
Q ss_pred cCcccCCcccc-------CCCCCCeEEcccCcCc
Q 036674 309 NFYGEISSNLG-------EYPKLGTLNVSMNNIT 335 (339)
Q Consensus 309 ~l~~~~~~~l~-------~l~~L~~L~l~~n~lt 335 (339)
++++.+|..+. .+++|+.|++++|+++
T Consensus 413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred cCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 66665555555 4555556666665555
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-37 Score=306.58 Aligned_cols=257 Identities=32% Similarity=0.513 Sum_probs=237.6
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.+++++|.+.+.+ +..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 394 ~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCCCEEECCSSEEEEEC-CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCccEEECCCCcccccc-CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 46888999999888877 77889999999999999999988999999999999999999999989999999999999999
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTS 240 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~ 240 (339)
+++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.. ++|++|++++|.+++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9999999899999999999999999999999999999999999999999999999999988887 999999999998887
Q ss_pred CCchhh----------------------------------------------------------------------cCCC
Q 036674 241 YLPHNV----------------------------------------------------------------------CRGG 250 (339)
Q Consensus 241 ~~~~~~----------------------------------------------------------------------~~~~ 250 (339)
.+|..+ ..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 666543 2356
Q ss_pred ccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcc
Q 036674 251 ALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVS 330 (339)
Q Consensus 251 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 330 (339)
+|+.|++++|++++.+|..++.+++|+.|++++|++++.+|..++.+++|++|||++|+++|.+|..+..+++|+.|+++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcccCC
Q 036674 331 MNNITGGIP 339 (339)
Q Consensus 331 ~n~lt~~ip 339 (339)
+|+++|.||
T Consensus 713 ~N~l~g~iP 721 (768)
T 3rgz_A 713 NNNLSGPIP 721 (768)
T ss_dssp SSEEEEECC
T ss_pred CCcccccCC
Confidence 999999998
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-37 Score=307.10 Aligned_cols=273 Identities=22% Similarity=0.277 Sum_probs=215.8
Q ss_pred cCCCHHHHHHHHHHHHhcccCCCCcCCCcccCCCCCCCCCCC--Ccc------------cceEeCCCCCEEEEEcCCCCC
Q 036674 29 SSESNEEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSP--CAW------------YGISCNDVGRVVNISLPAKGL 94 (339)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--c~~------------~gv~c~~~~~v~~l~l~~~~~ 94 (339)
++...+|.+||++||+++.. | +|..+. .+...++ |.| .||.|+..++|+.|+|+++++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~-~-----~W~~~~--~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDG-K-----NWRYYS--GTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA 335 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTG-G-----GCCCCC--SSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCC
T ss_pred cccchHHHHHHHHHHHHcCC-C-----CCCcCC--CcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCC
Confidence 34456799999999999943 2 673211 0011244 999 999998889999999999999
Q ss_pred ccccCCCCCCCCCCCCEEeC-CCCcCCCC---------------------------------------------------
Q 036674 95 KGKLHDFSFSSFPHLAYLDL-SHNELFGT--------------------------------------------------- 122 (339)
Q Consensus 95 ~~~~~~~~~~~l~~L~~L~l-~~n~~~~~--------------------------------------------------- 122 (339)
.|.+ ++.++++++|++|+| ++|.+.|.
T Consensus 336 ~G~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 336 KGRV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp EEEE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred CCcC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence 9999 789999999999999 66654332
Q ss_pred -------------------------CCccCCCCCccCeeeccCCCCcC-----------------cCchhhc--CCCCCc
Q 036674 123 -------------------------IPPQISNLTNLSDLYLEGDQFSG-----------------NIPPEVG--LMSHLK 158 (339)
Q Consensus 123 -------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~ 158 (339)
+|..++++++|++|+|++|.+++ .+|..++ ++++|+
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~ 494 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred cccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence 77788899999999999999986 3888877 999999
Q ss_pred EEEeeccCCCCCCCccccCCCCCcEEEeecCc-CCC-CCCCCCCCCC-------CCceeecccccCcccCCC--CCCC-C
Q 036674 159 FLYIDTNQLDGSIPPEVGQLSSLVELFLFFNH-LSG-SVPPSLGNLT-------NLQELILFCNNLSGSIPP--SLDN-P 226 (339)
Q Consensus 159 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~~~~-~ 226 (339)
+|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..++ +|++|++++|.++ .+|. .+.. +
T Consensus 495 ~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred EEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 99999999888999999999999999999998 876 6676555444 8888888888888 7777 6666 8
Q ss_pred CCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCC-CcEEEccccccccccchhcCCCCC--CCEe
Q 036674 227 MLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTS-LIRVRVNGNNLTGNISEALGIYPN--LNYI 303 (339)
Q Consensus 227 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~--L~~L 303 (339)
+|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+. |++|
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 8888888888888 566 7788888888888888888 77777777887 888888888877 56666555433 6666
Q ss_pred ecccccCcccCC
Q 036674 304 DLSRNNFYGEIS 315 (339)
Q Consensus 304 ~L~~n~l~~~~~ 315 (339)
++++|++.+.+|
T Consensus 650 ~Ls~N~l~g~ip 661 (876)
T 4ecn_A 650 DFSYNKIGSEGR 661 (876)
T ss_dssp ECCSSCTTTTSS
T ss_pred ECcCCcCCCccc
Confidence 666666665443
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.5e-36 Score=267.80 Aligned_cols=272 Identities=19% Similarity=0.268 Sum_probs=169.6
Q ss_pred cCCCHHHHHHHHHHHHhcccCCCCcCCCcccCCCCCCCCCCCCcccceEeC---------CCCCEEEEEcCCCCCccccC
Q 036674 29 SSESNEEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCN---------DVGRVVNISLPAKGLKGKLH 99 (339)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~gv~c~---------~~~~v~~l~l~~~~~~~~~~ 99 (339)
.++..+|.+||.+||..+..++......|.... ....++|.|.|+.|. ...+++.|+++++.+. .+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~---~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l- 96 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQAN---SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF- 96 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHT---TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC-
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccc---cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc-
Confidence 345678999999999998777777777883111 125678999999984 2356777777777776 34
Q ss_pred CCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccC--
Q 036674 100 DFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQ-- 177 (339)
Q Consensus 100 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~-- 177 (339)
+..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 445666777777777777776 66767777777777777777776 66777777777777777777666666665543
Q ss_pred -------CCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCC
Q 036674 178 -------LSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRG 249 (339)
Q Consensus 178 -------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~ 249 (339)
+++|++|++++|.+. .+|..+..+++|++|++++|.+++ +|..+.. ++|++|++++|.+.+.+|..+..+
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 666666666666665 555555556666666666665552 3333333 555555555555555555555555
Q ss_pred CccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeeccccc
Q 036674 250 GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNN 309 (339)
Q Consensus 250 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 309 (339)
++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.+++.+++|+.+++..+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 555555555555554555445555555555555555555555555555555555544443
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-34 Score=266.62 Aligned_cols=257 Identities=16% Similarity=0.183 Sum_probs=166.9
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchh--hcCCCCCcEE
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPE--VGLMSHLKFL 160 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L 160 (339)
+++.|+++++.+.+.+++..+.++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+.. +..+++|++|
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence 34444444444443443344555555555555555555445555556666666666666655433333 5566666666
Q ss_pred EeeccCCCCCCCcc-ccCCCCCcEEEeecCcCCCCCCCCCCCC----------------------------------CCC
Q 036674 161 YIDTNQLDGSIPPE-VGQLSSLVELFLFFNHLSGSVPPSLGNL----------------------------------TNL 205 (339)
Q Consensus 161 ~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l----------------------------------~~L 205 (339)
++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+ ++|
T Consensus 135 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp ECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred ECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence 66666666555544 5666666666666666665544433222 233
Q ss_pred ceeecccc---------------------------------------------------------------cCcccCCCC
Q 036674 206 QELILFCN---------------------------------------------------------------NLSGSIPPS 222 (339)
Q Consensus 206 ~~L~l~~n---------------------------------------------------------------~l~~~~~~~ 222 (339)
++|++++| .+++..|..
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 34444333 333333444
Q ss_pred CCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCC
Q 036674 223 LDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLN 301 (339)
Q Consensus 223 ~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 301 (339)
+.. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..++.+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 444 6777777777777776677777788888888888888777777788888888888888888877777888888888
Q ss_pred EeecccccCcccCCccccCCCCCCeEEcccCcCcccCC
Q 036674 302 YIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 302 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
+|++++|++++..+..+..+++|+.|++++|++++.+|
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 88888888886666667788888888888888888765
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-34 Score=267.44 Aligned_cols=255 Identities=22% Similarity=0.232 Sum_probs=212.4
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCC-CccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTI-PPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFL 160 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (339)
.+++.|++++|.+++.. +..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCC-hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 46999999999998776 778999999999999999987554 5679999999999999999997778999999999999
Q ss_pred EeeccCCCCCCCcc--ccCCCCCcEEEeecCcCCCCCCCC-CCCCCCCceeecccccCcccCCCCCCC------------
Q 036674 161 YIDTNQLDGSIPPE--VGQLSSLVELFLFFNHLSGSVPPS-LGNLTNLQELILFCNNLSGSIPPSLDN------------ 225 (339)
Q Consensus 161 ~l~~n~~~~~~p~~--~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~------------ 225 (339)
++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999998755554 889999999999999999877776 889999999999999988765543321
Q ss_pred -----------------------CCCcEEeCCCC----------------------------------------------
Q 036674 226 -----------------------PMLTRLDLDFN---------------------------------------------- 236 (339)
Q Consensus 226 -----------------------~~L~~L~l~~n---------------------------------------------- 236 (339)
++|++|++++|
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 34555555554
Q ss_pred -----------------CCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCC
Q 036674 237 -----------------HFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPN 299 (339)
Q Consensus 237 -----------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 299 (339)
.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 444445566777788888888888888777778888888888888888888777888888888
Q ss_pred CCEeecccccCcccCCccccCCCCCCeEEcccCcCccc
Q 036674 300 LNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 300 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
|++|++++|++++..|..+..+++|+.|++++|++++.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 88888888888877788888888888888888888763
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-35 Score=260.92 Aligned_cols=231 Identities=32% Similarity=0.548 Sum_probs=219.3
Q ss_pred CCCCEEeCCCCcCCC--CCCccCCCCCccCeeeccC-CCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcE
Q 036674 107 PHLAYLDLSHNELFG--TIPPQISNLTNLSDLYLEG-DQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVE 183 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 183 (339)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 9999899999999999999999999999899999999999999
Q ss_pred EEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-C-CCcEEeCCCCCCCCCCchhhcCCCccceeeccccc
Q 036674 184 LFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-P-MLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENH 261 (339)
Q Consensus 184 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 261 (339)
|++++|.+.+..|..+..+++|++|++++|.+++.+|..+.. + +|++|++++|.+++..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999999999999999999999999999899988877 5 999999999999988999999887 9999999999
Q ss_pred cCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcccCC
Q 036674 262 FQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 262 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
+++..|..+..+++|++|++++|.+++..+. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 9999999999999999999999999977776 7889999999999999999999999999999999999999999987
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-32 Score=252.82 Aligned_cols=252 Identities=22% Similarity=0.141 Sum_probs=134.4
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.|++++|.+++.. +..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4666777777666544 556666666777777666666555666666666666666666666333334556666666666
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcc------------------------c
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSG------------------------S 218 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------------------~ 218 (339)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 6666655555555566666666666665554444455555555555555554442 2
Q ss_pred CCCCCCC-CC------------------------CcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcC
Q 036674 219 IPPSLDN-PM------------------------LTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNC 273 (339)
Q Consensus 219 ~~~~~~~-~~------------------------L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 273 (339)
.+..+.. ++ |++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 2222222 33 3333333333333222334444445555555554444444444444
Q ss_pred CCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 274 TSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 274 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 55555555555555444445555555555555555555444444445555555555555544
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=255.80 Aligned_cols=230 Identities=19% Similarity=0.119 Sum_probs=188.6
Q ss_pred CCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEe
Q 036674 107 PHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 186 (339)
+++++|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 58999999999999878889999999999999999999777899999999999999999999666667899999999999
Q ss_pred ecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccc----
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENH---- 261 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~---- 261 (339)
++|.+.+..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 999999888889999999999999999999887877777 899999999998887655555555555555554443
Q ss_pred --------------------------------------------cCCCchHhhhcCCCCcEEEccccccccccchhcCCC
Q 036674 262 --------------------------------------------FQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIY 297 (339)
Q Consensus 262 --------------------------------------------l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 297 (339)
+++..+..+..+++|++|++++|.+++..+..+..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 333333456667777777777777776666667777
Q ss_pred CCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 298 PNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 298 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
++|++|++++|++++..|..+.++++|+.|++++|++++
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 777777777777777777777788888888888887765
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=246.90 Aligned_cols=256 Identities=17% Similarity=0.148 Sum_probs=214.9
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.++++++.+++.. +..+.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 37899999999998754 66899999999999999999877788899999999999999999854444588999999999
Q ss_pred eeccCCCCCCC-ccccCCCCCcEEEeecCc-CCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCC
Q 036674 162 IDTNQLDGSIP-PEVGQLSSLVELFLFFNH-LSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHF 238 (339)
Q Consensus 162 l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l 238 (339)
+++|.+++..+ ..+.++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+.. ++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999984433 378899999999999984 66566778999999999999999999888888887 9999999999998
Q ss_pred CCCCchhhcCCCccceeeccccccCCCchHhh---hcCCCCcEEEcccccccc----ccchhcCCCCCCCEeecccccCc
Q 036674 239 TSYLPHNVCRGGALQNFTVAENHFQGTIPKSL---RNCTSLIRVRVNGNNLTG----NISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 239 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
+......+..+++|+.|++++|.+++..+..+ ...+.++.+++.++.+.+ .+|.++..+++|++|++++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 76444445568999999999999987654433 346778899999988876 46778889999999999999999
Q ss_pred ccCCcc-ccCCCCCCeEEcccCcCcccCC
Q 036674 312 GEISSN-LGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 312 ~~~~~~-l~~l~~L~~L~l~~n~lt~~ip 339 (339)
.+|.. +..+++|+.|++++|++++..|
T Consensus 291 -~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 45544 6899999999999999998643
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.9e-31 Score=237.54 Aligned_cols=261 Identities=20% Similarity=0.255 Sum_probs=227.8
Q ss_pred CCCCcccceEeCC----------CCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeee
Q 036674 68 TSPCAWYGISCND----------VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLY 137 (339)
Q Consensus 68 ~~~c~~~gv~c~~----------~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 137 (339)
...|.|..+.|.. ...++.++++++.+++.. +..+.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3447888888852 236899999999998765 66899999999999999999987799999999999999
Q ss_pred ccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCC--CCCCCCCCCCCCceeecccccC
Q 036674 138 LEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSG--SVPPSLGNLTNLQELILFCNNL 215 (339)
Q Consensus 138 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l 215 (339)
+++|.+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 9999998 6776654 899999999999997777789999999999999999863 5677889999999999999999
Q ss_pred cccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcC
Q 036674 216 SGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALG 295 (339)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 295 (339)
+ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|.++.
T Consensus 184 ~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 184 T-TIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp C-SCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-cCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 8 4555444 89999999999999988889999999999999999999877878999999999999999998 7788889
Q ss_pred CCCCCCEeecccccCcccCCccccC------CCCCCeEEcccCcCc
Q 036674 296 IYPNLNYIDLSRNNFYGEISSNLGE------YPKLGTLNVSMNNIT 335 (339)
Q Consensus 296 ~~~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~lt 335 (339)
.+++|++|++++|++++..+..+.. .+.++.+++++|++.
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 9999999999999999766666643 478999999999885
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.6e-31 Score=236.91 Aligned_cols=259 Identities=21% Similarity=0.262 Sum_probs=223.9
Q ss_pred CCCcccceEeCCC----------CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeec
Q 036674 69 SPCAWYGISCNDV----------GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYL 138 (339)
Q Consensus 69 ~~c~~~gv~c~~~----------~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 138 (339)
..|.|..+.|... .+++.++++++.+.+.. +..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3478888888522 36899999999998665 678999999999999999999888899999999999999
Q ss_pred cCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCC--CCCCCCCCCCCCCceeecccccCc
Q 036674 139 EGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLS--GSVPPSLGNLTNLQELILFCNNLS 216 (339)
Q Consensus 139 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~ 216 (339)
++|.+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+. +..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999998 6777664 89999999999999766677999999999999999985 3667778777 9999999999998
Q ss_pred ccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCC
Q 036674 217 GSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGI 296 (339)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 296 (339)
+ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 ~-l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 186 G-IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp S-CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred c-cCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 4 555444 78999999999999888888999999999999999999888888999999999999999998 67777889
Q ss_pred CCCCCEeecccccCcccCCccccC------CCCCCeEEcccCcCc
Q 036674 297 YPNLNYIDLSRNNFYGEISSNLGE------YPKLGTLNVSMNNIT 335 (339)
Q Consensus 297 ~~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~lt 335 (339)
+++|++|++++|++++..+..+.. .++|+.|++++|+++
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 999999999999998766666654 467899999999886
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=3.4e-32 Score=239.82 Aligned_cols=253 Identities=20% Similarity=0.222 Sum_probs=199.9
Q ss_pred CCCcccceEeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcC--c
Q 036674 69 SPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSG--N 146 (339)
Q Consensus 69 ~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~ 146 (339)
..|.|.++.|.. ++++. + +.. -.++|++|++++|.++...+..|.++++|++|++++|.+.. .
T Consensus 5 C~C~~~~l~c~~-----------~~l~~-i-p~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 69 (306)
T 2z66_A 5 CSCSGTEIRCNS-----------KGLTS-V-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69 (306)
T ss_dssp CEEETTEEECCS-----------SCCSS-C-CSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred CeeCCCEEEcCC-----------CCccc-C-CCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence 347888888853 22322 1 221 23578889999888874444457888899999998888872 2
Q ss_pred CchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCC-CCCCCCCCCceeecccccCcccCCCCCCC
Q 036674 147 IPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVP-PSLGNLTNLQELILFCNNLSGSIPPSLDN 225 (339)
Q Consensus 147 ~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 225 (339)
.+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 3567777888999999888887 567778888899999998888875544 56788888999999988888777777766
Q ss_pred -CCCcEEeCCCCCCCC-CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEe
Q 036674 226 -PMLTRLDLDFNHFTS-YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYI 303 (339)
Q Consensus 226 -~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 303 (339)
++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 889999999888876 567788888899999999998887778888888899999999998887777778888899999
Q ss_pred ecccccCcccCCccccCCC-CCCeEEcccCcCccc
Q 036674 304 DLSRNNFYGEISSNLGEYP-KLGTLNVSMNNITGG 337 (339)
Q Consensus 304 ~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~lt~~ 337 (339)
++++|++++..+..+..++ +|+.|++++|++++.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 9999998888888888885 899999999988764
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.98 E-value=6.3e-31 Score=244.12 Aligned_cols=228 Identities=20% Similarity=0.160 Sum_probs=199.0
Q ss_pred CCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEe
Q 036674 107 PHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 186 (339)
+++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 68999999999998877888999999999999999998777788999999999999999998666677889999999999
Q ss_pred ecCcCCCCCCCCCCCCCCCceeecccccCcccCCC-CCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCC
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPP-SLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQG 264 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 264 (339)
++|.+....+..+..+++|++|++++|...+.++. .+.. ++|++|++++|++++. | .+..+++|+.|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 99999866667888999999999998554444444 4555 8999999999999874 3 57788999999999999998
Q ss_pred CchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 265 TIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
..|..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 889999999999999999999998888889999999999999999997777788899999999999998764
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=4e-31 Score=254.19 Aligned_cols=253 Identities=23% Similarity=0.224 Sum_probs=146.7
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
.++.++++++.+.+.. +..+.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccC-HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 5677777777776544 555777777777777777776 56666777777777777777776555556666666666666
Q ss_pred eccCCCCCCCc-cccCCCCCcEEEeecCcCCCCC--CCCCCCCCCCceeecccccCcccCCCCCCC--------------
Q 036674 163 DTNQLDGSIPP-EVGQLSSLVELFLFFNHLSGSV--PPSLGNLTNLQELILFCNNLSGSIPPSLDN-------------- 225 (339)
Q Consensus 163 ~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------------- 225 (339)
++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 66665544433 3555555555555555554332 344444555555555555444444443333
Q ss_pred ------------CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCC---chHhhhcCCCCcEEEcccccccccc
Q 036674 226 ------------PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGT---IPKSLRNCTSLIRVRVNGNNLTGNI 290 (339)
Q Consensus 226 ------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~ 290 (339)
++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 4555555555555554455555555555555555555431 1234555555555666555555555
Q ss_pred chhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcccC
Q 036674 291 SEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGI 338 (339)
Q Consensus 291 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~i 338 (339)
|..++.+++|++|++++|++++..|..+..+++| .|++++|++++.+
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 5555556666666666666655555556666666 6666666665443
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.4e-31 Score=256.83 Aligned_cols=249 Identities=18% Similarity=0.192 Sum_probs=170.0
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.++++++.+.... +..+.++++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..|..|+.+++|++|++
T Consensus 52 ~l~~l~l~~~~l~~lp-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEESEEC-THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCCCcC-HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 4566667766665432 445677778888888888777666667777888888888888777655666777788888888
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCC------------------
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD------------------ 224 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~------------------ 224 (339)
++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.....+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 88877754444567778888888888877777777777777777777777776642111110
Q ss_pred --------------------CCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccc
Q 036674 225 --------------------NPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284 (339)
Q Consensus 225 --------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (339)
.++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|++|++++|
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 0245556666666654 245667777777777777777777777777777777777777
Q ss_pred ccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 285 NLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 285 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|++++
T Consensus 289 ~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 289 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 7775 3444566777777777777776 455556666666666666666654
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=4.2e-31 Score=254.09 Aligned_cols=254 Identities=23% Similarity=0.226 Sum_probs=205.1
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCc-cCCCCCccCeeeccCCCCcCcC--chhhcCCCCCcE
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPP-QISNLTNLSDLYLEGDQFSGNI--PPEVGLMSHLKF 159 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~ 159 (339)
+++.+++++|.+.+.. +..+.++++|++|++++|.+.+.++. .+.++++|++|++++|.+.+.. +..+..+++|++
T Consensus 302 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 302 TLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp TCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred cCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE
Confidence 4555555555555443 34555566666666666655544433 3667777777777777776433 556777888888
Q ss_pred EEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCC-CCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCC
Q 036674 160 LYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPP-SLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNH 237 (339)
Q Consensus 160 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~ 237 (339)
|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+.. ++|++|++++|.
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 88888887767777888888888888888888766554 4788999999999999998878887777 999999999999
Q ss_pred CCCC---CchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccC
Q 036674 238 FTSY---LPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEI 314 (339)
Q Consensus 238 l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 314 (339)
+++. .+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..++.| +|++++|++++..
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 9862 33568899999999999999998889999999999999999999999999999999999 9999999999888
Q ss_pred CccccCCCCCCeEEcccCcCcccC
Q 036674 315 SSNLGEYPKLGTLNVSMNNITGGI 338 (339)
Q Consensus 315 ~~~l~~l~~L~~L~l~~n~lt~~i 338 (339)
|..+..+++|+.|++++|++++..
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSG
T ss_pred HhhcccCCCCCEEeCCCCCccccC
Confidence 888999999999999999998754
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.5e-31 Score=236.44 Aligned_cols=226 Identities=19% Similarity=0.234 Sum_probs=211.0
Q ss_pred CCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEE
Q 036674 105 SFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVEL 184 (339)
Q Consensus 105 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 184 (339)
..++++.|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 78888999999999999999999 89999999999999999999999 889999999999999
Q ss_pred EeecCcCCCCCCCCCCC---------CCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccce
Q 036674 185 FLFFNHLSGSVPPSLGN---------LTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQN 254 (339)
Q Consensus 185 ~l~~n~~~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 254 (339)
++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+.. ++|++|++++|.+++ +|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 99999988889987765 999999999999998 77877777 999999999999997 6667999999999
Q ss_pred eeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcC
Q 036674 255 FTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNI 334 (339)
Q Consensus 255 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 334 (339)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|..++++++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 036674 335 T 335 (339)
Q Consensus 335 t 335 (339)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 4
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-31 Score=242.49 Aligned_cols=248 Identities=19% Similarity=0.191 Sum_probs=156.1
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.++++++.++... +..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|..+.++++|++|++
T Consensus 46 ~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchhhCC-hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4566666666655432 444566777777777777776555556777777777777777777555556677777777777
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCC------------------
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD------------------ 224 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~------------------ 224 (339)
++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.....+.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 77777633333456777777777777777666666677777777777777766532111000
Q ss_pred --------------------CCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccc
Q 036674 225 --------------------NPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284 (339)
Q Consensus 225 --------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (339)
.++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 02455555555555542 35566667777777777776666666666777777777777
Q ss_pred ccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 285 NLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 285 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
++++ ++..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 283 ~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 283 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 6664 3444455666777777777666 44444555666666666666654
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=241.57 Aligned_cols=228 Identities=18% Similarity=0.154 Sum_probs=197.2
Q ss_pred CCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEe
Q 036674 107 PHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 186 (339)
++++.|++++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67899999999998777788999999999999999998766778899999999999999998666667899999999999
Q ss_pred ecCcCCCCCCCCCCCCCCCceeecccccCcccCCC-CCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCC
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPP-SLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQG 264 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 264 (339)
++|.+....+..+..+++|++|++++|...+.++. .+.. ++|++|++++|+++. +| .+..+++|+.|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 99999876677888999999999998554444444 4555 899999999999886 44 47788999999999999998
Q ss_pred CchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 265 TIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
..|..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 888889999999999999999998888889999999999999999997777788899999999999998764
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.5e-31 Score=250.93 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=124.7
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.+++++|.+++.. +..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 47999999999998776 67899999999999999999988888999999999999999999976666799999999999
Q ss_pred eeccCCCC-CCCccccCCCCCcEEEeecCcCCCCCC-CCCCCCCCCceeecccccCcccCCCCCC
Q 036674 162 IDTNQLDG-SIPPEVGQLSSLVELFLFFNHLSGSVP-PSLGNLTNLQELILFCNNLSGSIPPSLD 224 (339)
Q Consensus 162 l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 224 (339)
+++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 99999986 356789999999999999998544554 6789999999999999999887776654
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.4e-31 Score=252.53 Aligned_cols=248 Identities=21% Similarity=0.200 Sum_probs=149.6
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.+++++|.+++.. +..+.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 45667777777766544 456677777777777777776655666777777777777777666 45544 566666666
Q ss_pred eeccCCCC-CCCccccCCCCCcEEEeecCcCCC-------------------------CCCCCCCCCC------------
Q 036674 162 IDTNQLDG-SIPPEVGQLSSLVELFLFFNHLSG-------------------------SVPPSLGNLT------------ 203 (339)
Q Consensus 162 l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~-------------------------~~~~~l~~l~------------ 203 (339)
+++|.+++ ..|..++++++|++|++++|.+.+ ..|..+..+.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 66666654 234566666666666666665543 2222222211
Q ss_pred ---------------------------------------------------------------------CCceeeccccc
Q 036674 204 ---------------------------------------------------------------------NLQELILFCNN 214 (339)
Q Consensus 204 ---------------------------------------------------------------------~L~~L~l~~n~ 214 (339)
+|++|++++|.
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 45555555555
Q ss_pred CcccCCCCC-----------------------------------------------------CC-CCCcEEeCCCCCCCC
Q 036674 215 LSGSIPPSL-----------------------------------------------------DN-PMLTRLDLDFNHFTS 240 (339)
Q Consensus 215 l~~~~~~~~-----------------------------------------------------~~-~~L~~L~l~~n~l~~ 240 (339)
+++.+|..+ .. ++|++|++++|.+++
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence 555555433 22 556666666666666
Q ss_pred CCchhhcCCCccceeeccccccCCC--chHhhhcCCCCcEEEccccccccccc-hhcCCCCCCCEeecccccCcccCCcc
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGT--IPKSLRNCTSLIRVRVNGNNLTGNIS-EALGIYPNLNYIDLSRNNFYGEISSN 317 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~ 317 (339)
..|..+..+++|+.|++++|++++. +|..+..+++|++|++++|++++.+| ..+..+++|++|++++|++++.+|..
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 5666666666666666666666642 24455666666666666666665333 34555666666666666666555444
Q ss_pred ccCCCCCCeEEcccCcCc
Q 036674 318 LGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 318 l~~l~~L~~L~l~~n~lt 335 (339)
+. ++|+.|++++|+++
T Consensus 448 l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp CC--TTCSEEECCSSCCC
T ss_pred hc--CcCCEEECCCCcCc
Confidence 33 56677777777665
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.8e-31 Score=257.56 Aligned_cols=253 Identities=19% Similarity=0.320 Sum_probs=185.4
Q ss_pred CCCEEEEEcCCCCCccc-----------------cCCCCCC--CCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCC
Q 036674 81 VGRVVNISLPAKGLKGK-----------------LHDFSFS--SFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGD 141 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 141 (339)
..+++.+++++|.+++. + +..++ ++++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccC-chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 45789999999999884 6 67777 8999999999999988889999999999999999999
Q ss_pred C-CcC-cCchhhcCC------CCCcEEEeeccCCCCCCCc--cccCCCCCcEEEeecCcCCCCCCCCCCCCCCCc-----
Q 036674 142 Q-FSG-NIPPEVGLM------SHLKFLYIDTNQLDGSIPP--EVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQ----- 206 (339)
Q Consensus 142 ~-l~~-~~p~~l~~l------~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----- 206 (339)
+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.+.|.+| .+..+++|+
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 887 688777765 88888888888887 7777 78888888888888887776666 555444444
Q ss_pred -------------------eeecccccCcccCCCCCCC---CCCcEEeCCCCCCCCCCchhhc-------CCCccceeec
Q 036674 207 -------------------ELILFCNNLSGSIPPSLDN---PMLTRLDLDFNHFTSYLPHNVC-------RGGALQNFTV 257 (339)
Q Consensus 207 -------------------~L~l~~n~l~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l 257 (339)
+|++++|.++ .+|..+.. ++|++|++++|.+++..|..+. .+++|+.|++
T Consensus 362 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 362 YNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 4455544444 34443333 2456666666666655555555 5567777777
Q ss_pred cccccCCCchHhhhcCCCCcEEEccccccccccchhcCCC-------CCCCEeecccccCcccCCcccc--CCCCCCeEE
Q 036674 258 AENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIY-------PNLNYIDLSRNNFYGEISSNLG--EYPKLGTLN 328 (339)
Q Consensus 258 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-------~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~ 328 (339)
++|.+++..+..+..+++|++|++++|+++...+..+... ++|++|++++|+++ .+|..+. .+++|+.|+
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGID 519 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEE
Confidence 7777774444455667888888888888873333333222 28888889888888 6777776 889999999
Q ss_pred cccCcCcccCC
Q 036674 329 VSMNNITGGIP 339 (339)
Q Consensus 329 l~~n~lt~~ip 339 (339)
+++|++++ ||
T Consensus 520 Ls~N~l~~-ip 529 (636)
T 4eco_A 520 LSYNSFSK-FP 529 (636)
T ss_dssp CCSSCCSS-CC
T ss_pred CCCCCCCC-cC
Confidence 99999887 65
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.8e-30 Score=243.05 Aligned_cols=103 Identities=29% Similarity=0.359 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcC-cCchhhcCCCCCcEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSG-NIPPEVGLMSHLKFL 160 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L 160 (339)
.+++.+++++|.+++.. +..+.++++|++|++++|.++ .+|.. .+++|++|++++|.+.+ .+|..++++++|++|
T Consensus 45 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 45 SKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp TTCCEEECCSSCCCEEE-GGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred ccccEEecCCCccCCcC-hHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 45666666666666554 455666666666666666665 34443 56666666666666664 355666666666666
Q ss_pred EeeccCCCCCCCccccCCCCC--cEEEeecCcC
Q 036674 161 YIDTNQLDGSIPPEVGQLSSL--VELFLFFNHL 191 (339)
Q Consensus 161 ~l~~n~~~~~~p~~~~~l~~L--~~L~l~~n~~ 191 (339)
++++|.+++ ..+..+++| ++|++++|.+
T Consensus 121 ~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 121 GLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred EecCcccch---hhccccccceeeEEEeecccc
Confidence 666666542 223333444 4444444444
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.8e-30 Score=247.44 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=57.8
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.+++++|.+++.. +..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+..++++++|++|++
T Consensus 57 ~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred cCcEEeCCCCcccccC-HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 4455555555444433 344555555555555555555444555555555555555555555333344555555555555
Q ss_pred eccCCCC-CCCccccCCCCCcEEEeecCcCC
Q 036674 163 DTNQLDG-SIPPEVGQLSSLVELFLFFNHLS 192 (339)
Q Consensus 163 ~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~ 192 (339)
++|.+.+ .+|..++++++|++|++++|.+.
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 5555543 34556666666666666665544
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=2.1e-30 Score=252.39 Aligned_cols=248 Identities=22% Similarity=0.252 Sum_probs=180.3
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.|+++++.+++.. +..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 47899999999988755 56789999999999999999888888899999999999999999844444688999999999
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCC---CCCCcEEeCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD---NPMLTRLDLDFNHF 238 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~~L~~L~l~~n~l 238 (339)
+++|.+++..|..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. .++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999877778899999999999999999888888888899999999999988765554332 26788888888887
Q ss_pred CCCCchhhcCC---------------------------CccceeeccccccCCCchHhhhcCCC--CcEEEccccccccc
Q 036674 239 TSYLPHNVCRG---------------------------GALQNFTVAENHFQGTIPKSLRNCTS--LIRVRVNGNNLTGN 289 (339)
Q Consensus 239 ~~~~~~~~~~~---------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~ 289 (339)
++..+..+..+ ++|+.|++++|.+++..|..+..++. |++|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 77665544433 34455555555555555555554432 66666666666655
Q ss_pred cchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcc
Q 036674 290 ISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVS 330 (339)
Q Consensus 290 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 330 (339)
.+.+++.+++|++|++++|++++..|..+.++++|+.|+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 55555666666666666666555444444433333333333
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=257.21 Aligned_cols=254 Identities=20% Similarity=0.205 Sum_probs=156.4
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchh--hcCCCCCcEEE
Q 036674 84 VVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPE--VGLMSHLKFLY 161 (339)
Q Consensus 84 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~ 161 (339)
++.|++++|...+.+++..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|.. +..+++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 3344444433333333334444444444444444444444444444444444444444444333332 44444444444
Q ss_pred eeccCCCCCCC-ccccCCCCCcEEEeecCcCCCCCCCCCCCC--CCCceeecccccCcccCCCCCCC-------CCCcEE
Q 036674 162 IDTNQLDGSIP-PEVGQLSSLVELFLFFNHLSGSVPPSLGNL--TNLQELILFCNNLSGSIPPSLDN-------PMLTRL 231 (339)
Q Consensus 162 l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~-------~~L~~L 231 (339)
+++|.+++..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.|+++.|.+.+..+..+.. ..|++|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 44444443322 234444444444444444444444444433 44555555555554444443332 238888
Q ss_pred eCCCCCCCCCCchhhcC--------------------------------------CCccceeeccccccCCCchHhhhcC
Q 036674 232 DLDFNHFTSYLPHNVCR--------------------------------------GGALQNFTVAENHFQGTIPKSLRNC 273 (339)
Q Consensus 232 ~l~~n~l~~~~~~~~~~--------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~~ 273 (339)
++++|.+++..+..+.. .++|+.|++++|.+.+..+..+..+
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 88888776544433321 2678899999999888788888999
Q ss_pred CCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCccc
Q 036674 274 TSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 274 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|++++.
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 353 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence 9999999999999988888899999999999999999888888899999999999999988654
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=252.61 Aligned_cols=254 Identities=22% Similarity=0.177 Sum_probs=182.0
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCcc--CCCCCccCeeeccCCCCcCcCc-hhhcCCCCCc
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQ--ISNLTNLSDLYLEGDQFSGNIP-PEVGLMSHLK 158 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~ 158 (339)
.+++.|+|++|.+.+.. +..|.++++|++|++++|.+.+.++.. +.++++|++|++++|.+.+..+ ..++++++|+
T Consensus 73 ~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCCCEEC-TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcCcccC-HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 46777777777777665 667777777777777777777655544 7777777777777777765433 4677777777
Q ss_pred EEEeeccCCCCCCCccccCC--CCCcEEEeecCcCCCCCCCCCCCCCC------CceeecccccCcccCCCCCC------
Q 036674 159 FLYIDTNQLDGSIPPEVGQL--SSLVELFLFFNHLSGSVPPSLGNLTN------LQELILFCNNLSGSIPPSLD------ 224 (339)
Q Consensus 159 ~L~l~~n~~~~~~p~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~~------ 224 (339)
+|++++|.+++..+..+..+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+++..+..+.
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 77777777777777777666 77777777777777766666655554 77777777765543332211
Q ss_pred ---------------------------------CCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhh
Q 036674 225 ---------------------------------NPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLR 271 (339)
Q Consensus 225 ---------------------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 271 (339)
.++|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..|.
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 311 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence 14677777777777776677777777777777777777766677777
Q ss_pred cCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 272 NCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 272 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
.+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 77777777777777776667777777777777777777776666667777777777777777764
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.4e-29 Score=220.96 Aligned_cols=250 Identities=21% Similarity=0.202 Sum_probs=197.3
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeec
Q 036674 85 VNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDT 164 (339)
Q Consensus 85 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 164 (339)
+.++.++++++.. + ..-.++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~i--p--~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAV--P--VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSC--C--TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccC--C--cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4566666666543 2 23357899999999999877777899999999999999999877788899999999999999
Q ss_pred cC-CCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCC
Q 036674 165 NQ-LDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYL 242 (339)
Q Consensus 165 n~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~ 242 (339)
|. +....|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77666888999999999999999998877888889999999999999988666565665 88999999999888766
Q ss_pred chhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCC
Q 036674 243 PHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYP 322 (339)
Q Consensus 243 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 322 (339)
+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++....+.. .-..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 667888888999999998888777888888888889999888888777777888888888888888887433221 0111
Q ss_pred CCCeEEcccCcCcccCC
Q 036674 323 KLGTLNVSMNNITGGIP 339 (339)
Q Consensus 323 ~L~~L~l~~n~lt~~ip 339 (339)
.++.+..+.+.+.+..|
T Consensus 249 ~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHHCCSEECCCBEEES
T ss_pred HHHhcccccCccccCCc
Confidence 23334455555555443
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=8.2e-30 Score=232.21 Aligned_cols=246 Identities=20% Similarity=0.218 Sum_probs=205.4
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchh-hcCCCCCcEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPE-VGLMSHLKFL 160 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 160 (339)
.+++.++++++.+.+.. +..+..+++|++|++++|.+.+..|..++++++|++|++++|.+. .+|.. +..+++|++|
T Consensus 69 ~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred ccCcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence 57899999999998665 668999999999999999999877888999999999999999998 55554 6889999999
Q ss_pred EeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCC-------------------------------------CC
Q 036674 161 YIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGN-------------------------------------LT 203 (339)
Q Consensus 161 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-------------------------------------l~ 203 (339)
++++|.+.+..|..+..+++|++|++++|.+.+.....+.. .+
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 226 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 226 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence 99999999777888999999999999999887542222211 12
Q ss_pred CCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcc
Q 036674 204 NLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVN 282 (339)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 282 (339)
+|+.|++++|.+++. ..+.. ++|++|++++|.+++..+..+..+++|+.|++++|++++ +|..+..+++|++|+++
T Consensus 227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECC
T ss_pred cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECC
Confidence 456666666666532 23444 899999999999999889999999999999999999985 56666788999999999
Q ss_pred ccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 283 GNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 283 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
+|+++ .+|..+..+++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 99998 5566678899999999999999844 3 6788999999999999875
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-29 Score=225.78 Aligned_cols=244 Identities=23% Similarity=0.307 Sum_probs=213.5
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.+++++++++. + +..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~-i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-V-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSS-C-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccc-c-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 35778999988874 3 3333 378999999999998777888999999999999999999777889999999999999
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcc--cCCCCCCCCCCcEEeCCCCCCCC
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSG--SIPPSLDNPMLTRLDLDFNHFTS 240 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~ 240 (339)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+...+|++|++++|++++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 999998 6666554 899999999999997666679999999999999999963 55666655689999999999987
Q ss_pred CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccC
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGE 320 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 320 (339)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+.++..+++|++|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 554443 79999999999999888888999999999999999999888888999999999999999999 78888999
Q ss_pred CCCCCeEEcccCcCccc
Q 036674 321 YPKLGTLNVSMNNITGG 337 (339)
Q Consensus 321 l~~L~~L~l~~n~lt~~ 337 (339)
+++|+.|++++|++++.
T Consensus 263 l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CTTCCEEECCSSCCCBC
T ss_pred CccCCEEECCCCCCCcc
Confidence 99999999999999854
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.6e-29 Score=237.27 Aligned_cols=105 Identities=23% Similarity=0.191 Sum_probs=51.7
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.+++++|.+.+.. +..+.++++|++|++++|.+++..|..|+++++|++|++++|.+. .+|.. .+++|++|++
T Consensus 22 ~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 22 KTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred cccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 4455555555544332 234455555555555555554444444555555555555555554 34433 4555555555
Q ss_pred eccCCCC-CCCccccCCCCCcEEEeecCcC
Q 036674 163 DTNQLDG-SIPPEVGQLSSLVELFLFFNHL 191 (339)
Q Consensus 163 ~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~ 191 (339)
++|.+++ .+|..++++++|++|++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cCCccccccchhhhccCCcceEEEecCccc
Confidence 5555543 2344555555555555555544
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.9e-29 Score=224.58 Aligned_cols=244 Identities=20% Similarity=0.276 Sum_probs=213.1
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.+++++++++.. +..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~l--p~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV--PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSC--CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcccc--CccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 356788988887643 2223 368999999999999777778999999999999999999777899999999999999
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcc--cCCCCCCC-CCCcEEeCCCCCCC
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSG--SIPPSLDN-PMLTRLDLDFNHFT 239 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~-~~L~~L~l~~n~l~ 239 (339)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.. ++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999998 5666554 799999999999997777778999999999999999863 55666666 99999999999998
Q ss_pred CCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCcccc
Q 036674 240 SYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLG 319 (339)
Q Consensus 240 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 319 (339)
. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 7 454443 89999999999999888889999999999999999999888888999999999999999999 7888899
Q ss_pred CCCCCCeEEcccCcCccc
Q 036674 320 EYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 320 ~l~~L~~L~l~~n~lt~~ 337 (339)
.+++|+.|++++|++++.
T Consensus 261 ~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TCSSCCEEECCSSCCCCC
T ss_pred cCCCcCEEECCCCcCCcc
Confidence 999999999999999763
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.5e-29 Score=234.90 Aligned_cols=228 Identities=19% Similarity=0.176 Sum_probs=204.3
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.|++++|.+++.. +..|.++++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 37899999999998876 77899999999999999999988888999999999999999999965556789999999999
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCc-CCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNH-LSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTS 240 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 240 (339)
+++|.+....+..|.++++|++|++++|. +....+..+..+++|++|++++|.+++ +|.....++|++|++++|.+++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcc
Confidence 99999996666789999999999999854 443344578899999999999999984 5554334999999999999999
Q ss_pred CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCc
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 88999999999999999999999888999999999999999999999888888899999999999999864
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.3e-29 Score=243.13 Aligned_cols=248 Identities=20% Similarity=0.198 Sum_probs=209.4
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.|++++|.+.+.. +..+..+++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+..|..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 47899999999998765 67899999999999999999988888899999999999999999944444568999999999
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCC-------------------------------------CC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNL-------------------------------------TN 204 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-------------------------------------~~ 204 (339)
+++|.+++..|..+..+++|++|++++|.+.+..+..+..+ ++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 99999998888889999999999999999875432222111 23
Q ss_pred CceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccc
Q 036674 205 LQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNG 283 (339)
Q Consensus 205 L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 283 (339)
|+.|++++|.+++ +..+.. ++|++|++++|.+++..|..+..+++|+.|++++|.+++ +|..+..+++|++|++++
T Consensus 234 L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred CCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence 5566666666654 233444 999999999999999889999999999999999999985 566677899999999999
Q ss_pred cccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCccc
Q 036674 284 NNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 284 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
|.++ .+|..+..+++|++|++++|.+++. + +..+++|+.|++++|++++.
T Consensus 311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 311 NHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 9999 5677778899999999999999854 3 67889999999999998753
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5.1e-29 Score=240.37 Aligned_cols=133 Identities=29% Similarity=0.340 Sum_probs=112.3
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
.++.|+|++|.+++.. +..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++.+..+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 6899999999998655 778999999999999999998777788999999999999999998555567899999999999
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCC-CCCCCCCCCCCCceeecccccCc
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSG-SVPPSLGNLTNLQELILFCNNLS 216 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~ 216 (339)
++|.+++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9999987666678899999999999988865 35666677777777777766543
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1e-29 Score=221.72 Aligned_cols=249 Identities=20% Similarity=0.189 Sum_probs=208.5
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCC-CcCcCchhhcCCCCCcEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQ-FSGNIPPEVGLMSHLKFL 160 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L 160 (339)
.+++.++++++.+++.. +..+..+++|++|++++|.+.+..+..+.++++|++|++++|. +....|..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 47899999999998765 6679999999999999999987778889999999999999997 775557889999999999
Q ss_pred EeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCC
Q 036674 161 YIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFT 239 (339)
Q Consensus 161 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~ 239 (339)
++++|.+++..|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999877888999999999999999999777777899999999999999998666666766 99999999999999
Q ss_pred CCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCcccc
Q 036674 240 SYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLG 319 (339)
Q Consensus 240 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 319 (339)
+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+....+.. .....++.+..+.+.+....|..+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 988899999999999999999999888888999999999999999988644321 1123455566777888777777665
Q ss_pred C--CCCCCeEEcccC
Q 036674 320 E--YPKLGTLNVSMN 332 (339)
Q Consensus 320 ~--l~~L~~L~l~~n 332 (339)
+ +..+...++.+|
T Consensus 270 g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 270 GRDLKRLAANDLQGC 284 (285)
T ss_dssp TCBGGGSCGGGSCCC
T ss_pred CcChhhcCHHHhccC
Confidence 4 344555555544
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.3e-29 Score=249.84 Aligned_cols=248 Identities=19% Similarity=0.277 Sum_probs=153.6
Q ss_pred CCCEEEEEcCCCCCcc-----------------ccCCCCCC--CCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCC
Q 036674 81 VGRVVNISLPAKGLKG-----------------KLHDFSFS--SFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGD 141 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~-----------------~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 141 (339)
..+++.|+|++|.+++ .+ |..++ ++++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 3578888888888887 25 56666 8888888888888888888888888888888888888
Q ss_pred C-CcC-cCchhhcCCC-------CCcEEEeeccCCCCCCCc--cccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeec
Q 036674 142 Q-FSG-NIPPEVGLMS-------HLKFLYIDTNQLDGSIPP--EVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELIL 210 (339)
Q Consensus 142 ~-l~~-~~p~~l~~l~-------~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 210 (339)
+ +++ .+|..++.++ +|++|++++|.++ .+|. .+.++++|+.|++++|.+. .+| .+..+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 7 776 5666555443 7777777777776 6666 6666666666666666666 555 5555555666666
Q ss_pred ccccCcccCCCCCCC-CC-CcEEeCCCCCCCCCCchhhcC-------------------------------CCccceeec
Q 036674 211 FCNNLSGSIPPSLDN-PM-LTRLDLDFNHFTSYLPHNVCR-------------------------------GGALQNFTV 257 (339)
Q Consensus 211 ~~n~l~~~~~~~~~~-~~-L~~L~l~~n~l~~~~~~~~~~-------------------------------~~~L~~L~l 257 (339)
++|.++ .+|..+.. ++ |++|++++|.++ .+|..+.. +++|+.|++
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 555555 44444444 44 555555555444 23322221 225555566
Q ss_pred cccccCCCchHhhhcCCCCcEEEccccccccccchhcCC--------CCCCCEeecccccCcccCCcccc--CCCCCCeE
Q 036674 258 AENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGI--------YPNLNYIDLSRNNFYGEISSNLG--EYPKLGTL 327 (339)
Q Consensus 258 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--------~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L 327 (339)
++|.++...+..+..+++|+.|++++|.++ .+|..+.. +++|++|+|++|+++ .+|..+. .+++|+.|
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred cCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence 666555333333345666666666666666 33332211 125666666666665 4555554 56666666
Q ss_pred EcccCcCcc
Q 036674 328 NVSMNNITG 336 (339)
Q Consensus 328 ~l~~n~lt~ 336 (339)
++++|++++
T Consensus 759 ~Ls~N~L~~ 767 (876)
T 4ecn_A 759 DVSYNCFSS 767 (876)
T ss_dssp ECCSSCCSS
T ss_pred EeCCCCCCc
Confidence 666666655
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.3e-30 Score=229.77 Aligned_cols=230 Identities=19% Similarity=0.198 Sum_probs=206.2
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCC--CCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGT--IPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKF 159 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 159 (339)
.+++.++++++.++... ...+.++++|++|++++|.+... .+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccC-HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 57999999999998543 56689999999999999998732 3566778999999999999998 68888999999999
Q ss_pred EEeeccCCCCCCC-ccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcc-cCCCCCCC-CCCcEEeCCCC
Q 036674 160 LYIDTNQLDGSIP-PEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSG-SIPPSLDN-PMLTRLDLDFN 236 (339)
Q Consensus 160 L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~-~~L~~L~l~~n 236 (339)
|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+.. ++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999999985544 578999999999999999998888889999999999999999986 56777777 99999999999
Q ss_pred CCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCC-CCCEeecccccCccc
Q 036674 237 HFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYP-NLNYIDLSRNNFYGE 313 (339)
Q Consensus 237 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~ 313 (339)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++.
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 99998888999999999999999999988777899999999999999999999998888884 999999999999864
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1e-28 Score=235.41 Aligned_cols=252 Identities=19% Similarity=0.247 Sum_probs=207.1
Q ss_pred CCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcC-cCchhhcCCCCCc
Q 036674 80 DVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSG-NIPPEVGLMSHLK 158 (339)
Q Consensus 80 ~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 158 (339)
...+++.|++++|.+++.. +..|.++++|++|++++|.++ .+|.. .+++|++|++++|.+.+ ..|..++++++|+
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred cCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 3467999999999998766 678999999999999999987 56655 78999999999999885 3457888888888
Q ss_pred EEEeeccCCCC-------------------------CCCccccCCC----------------------------------
Q 036674 159 FLYIDTNQLDG-------------------------SIPPEVGQLS---------------------------------- 179 (339)
Q Consensus 159 ~L~l~~n~~~~-------------------------~~p~~~~~l~---------------------------------- 179 (339)
+|++++|.+.+ ..|..+..+.
T Consensus 150 ~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp EEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred EEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence 88888887653 2233333222
Q ss_pred -----------------------------------------------CCcEEEeecCcCCCCCCCCC-------------
Q 036674 180 -----------------------------------------------SLVELFLFFNHLSGSVPPSL------------- 199 (339)
Q Consensus 180 -----------------------------------------------~L~~L~l~~n~~~~~~~~~l------------- 199 (339)
+|++|++++|.+.+.+|..+
T Consensus 230 ~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~ 309 (562)
T 3a79_B 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309 (562)
T ss_dssp CCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred ccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheeh
Confidence 67777777787777777654
Q ss_pred ----------------------------------------CCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCC
Q 036674 200 ----------------------------------------GNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHF 238 (339)
Q Consensus 200 ----------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l 238 (339)
..+++|++|++++|.+++..|..+.. ++|++|++++|++
T Consensus 310 ~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 389 (562)
T 3a79_B 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389 (562)
T ss_dssp EEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred hhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence 66789999999999999888888877 9999999999999
Q ss_pred CCC--CchhhcCCCccceeeccccccCCCchH-hhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCC
Q 036674 239 TSY--LPHNVCRGGALQNFTVAENHFQGTIPK-SLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEIS 315 (339)
Q Consensus 239 ~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 315 (339)
++. .|..+..+++|+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|
T Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip 466 (562)
T 3a79_B 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP 466 (562)
T ss_dssp CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccC
Confidence 973 356788999999999999999984554 578899999999999999987776543 79999999999999 677
Q ss_pred ccccCCCCCCeEEcccCcCcccCC
Q 036674 316 SNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 316 ~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
..+..+++|+.|++++|+++ .||
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~-~l~ 489 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLK-SVP 489 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCC-CCC
T ss_pred hhhcCCCCCCEEECCCCCCC-CCC
Confidence 77779999999999999998 454
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.1e-29 Score=244.20 Aligned_cols=248 Identities=18% Similarity=0.112 Sum_probs=204.0
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCc--CchhhcCCCCCcEE
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGN--IPPEVGLMSHLKFL 160 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L 160 (339)
+++.+++++|.+ +.+ + .+ .+++|++|++++|...+.. .+..+++|++|++++|.+.+. .|..+..+++|++|
T Consensus 308 ~L~~L~l~~n~l-~~l-p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQF-P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCSEEEEESCCC-SSC-C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred cCCEEEcccccC-ccc-c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 566666666666 444 2 34 6777777777777544333 466788888888888888744 37788889999999
Q ss_pred EeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCC-CCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCC
Q 036674 161 YIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVP-PSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHF 238 (339)
Q Consensus 161 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l 238 (339)
++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+.. ++|++|++++|.+
T Consensus 382 ~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp ECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 99999887 466788889999999999999887766 67888999999999999998888887777 8999999999998
Q ss_pred CC-CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCcc
Q 036674 239 TS-YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSN 317 (339)
Q Consensus 239 ~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 317 (339)
++ ..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|..++.+++|++|++++|+++ .+|..
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 87 46788889999999999999999888888999999999999999999888899999999999999999998 66666
Q ss_pred ccCCC-CCCeEEcccCcCcccC
Q 036674 318 LGEYP-KLGTLNVSMNNITGGI 338 (339)
Q Consensus 318 l~~l~-~L~~L~l~~n~lt~~i 338 (339)
+..++ +|+.|++++|++++..
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSS
T ss_pred HhhhcccCcEEEccCCCcccCC
Confidence 88887 5999999999988754
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=236.20 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=84.0
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccC-CCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEee
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQ-GTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYID 304 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 304 (339)
++|++|++++|.+.+..+..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|.+++.+++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 55666666666665555666666777777777777776 45666777777888888888877777777777788888888
Q ss_pred cccccCcccCCccccCCCCCCeEEcccCcCcccCC
Q 036674 305 LSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 305 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
+++|++++..+..+..+++|+.|++++|++++.+|
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 88888877666677788888888888888887765
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.2e-29 Score=230.46 Aligned_cols=228 Identities=24% Similarity=0.204 Sum_probs=204.4
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
..++.+++++|.+.+.. +..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 46899999999998776 77899999999999999999977778899999999999999999955555799999999999
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCc-CCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNH-LSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTS 240 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 240 (339)
+++|.+....+..|.++++|++|++++|. +....+..+..+++|++|++++|.++ .+|.....++|++|++++|.+++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCc
Confidence 99999997777789999999999999855 44344457899999999999999998 56654434999999999999999
Q ss_pred CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCc
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88999999999999999999999888889999999999999999999888888899999999999999864
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.2e-31 Score=236.92 Aligned_cols=245 Identities=19% Similarity=0.200 Sum_probs=202.7
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCC-CCCCccCC-------CCCccCeeeccCCCCcCcCchhh--
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELF-GTIPPQIS-------NLTNLSDLYLEGDQFSGNIPPEV-- 151 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~~l-- 151 (339)
.+++.++++++.+ .+ +..+... |+.|++++|.+. ..++..+. ++++|++|++++|.+.+.+|..+
T Consensus 43 ~~L~~l~l~~n~l--~~-p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--AD-LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CC-CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--cc-HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 3456667777777 33 3333333 889999999984 45666665 79999999999999998888876
Q ss_pred cCCCCCcEEEeeccCCCCCCCccccCC-----CCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCccc--CCCCC-
Q 036674 152 GLMSHLKFLYIDTNQLDGSIPPEVGQL-----SSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGS--IPPSL- 223 (339)
Q Consensus 152 ~~l~~L~~L~l~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~- 223 (339)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8999999999999999976 8888777 9999999999999988889999999999999999998764 22222
Q ss_pred -CC-CCCcEEeCCCCCCCCC--C-chhhcCCCccceeeccccccCCCch-HhhhcCCCCcEEEccccccccccchhcCCC
Q 036674 224 -DN-PMLTRLDLDFNHFTSY--L-PHNVCRGGALQNFTVAENHFQGTIP-KSLRNCTSLIRVRVNGNNLTGNISEALGIY 297 (339)
Q Consensus 224 -~~-~~L~~L~l~~n~l~~~--~-~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 297 (339)
.. ++|++|++++|++++. . ...+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 34 8999999999999842 2 2345678999999999999998764 45667899999999999999 6677665
Q ss_pred CCCCEeecccccCcccCCccccCCCCCCeEEcccCcCccc
Q 036674 298 PNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 298 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
++|++|++++|++++. |. +..+++|+.|++++|++++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8999999999999965 65 89999999999999999874
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=5.6e-28 Score=235.37 Aligned_cols=249 Identities=19% Similarity=0.188 Sum_probs=215.1
Q ss_pred EEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccC
Q 036674 87 ISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQ 166 (339)
Q Consensus 87 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 166 (339)
++.++++++. + |..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 9 ~~cs~~~L~~-i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLTQ-V-PDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCSS-C-CSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eECCCCCccc-c-ccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 4555555653 3 33332 789999999999997777789999999999999999998888899999999999999999
Q ss_pred CCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchh
Q 036674 167 LDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHN 245 (339)
Q Consensus 167 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~ 245 (339)
+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.. ++|++|++++|.+++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 99655567999999999999999999777788999999999999999999888887777 99999999999999877766
Q ss_pred hc--CCCccceeeccccccCCCchHhhhcC---------------------------CCCcEEEccccccccccchhcCC
Q 036674 246 VC--RGGALQNFTVAENHFQGTIPKSLRNC---------------------------TSLIRVRVNGNNLTGNISEALGI 296 (339)
Q Consensus 246 ~~--~~~~L~~L~l~~n~l~~~~~~~~~~~---------------------------~~L~~L~l~~n~l~~~~~~~l~~ 296 (339)
+. .+++|+.|++++|.+++..|..+..+ ++|++|++++|.+++..|.++..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 54 56899999999999998777666543 56788888999998888888877
Q ss_pred CCC--CCEeecccccCcccCCccccCCCCCCeEEcccCcCcccCC
Q 036674 297 YPN--LNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 297 ~~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
++. |++|++++|++++..+..++.+++|+.|++++|++++.+|
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence 754 9999999999998888899999999999999999987654
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=232.72 Aligned_cols=133 Identities=29% Similarity=0.340 Sum_probs=77.8
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.|+++++.+++.. +..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccC-hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 4566666666665543 445666666666666666665555555666666666666666665444455666666666666
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCC-CCCCCCCCCCCCceeecccccCc
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSG-SVPPSLGNLTNLQELILFCNNLS 216 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~ 216 (339)
++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 6666554333345566666666666665554 24555555556665555555443
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=9.1e-28 Score=215.17 Aligned_cols=238 Identities=24% Similarity=0.368 Sum_probs=115.2
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.++++++.+++.. .+..+++|++|++++|.+++ ++ .+.++++|++|++++|.+. .++. +..+++|++|+
T Consensus 66 ~~L~~L~l~~n~i~~~~---~~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNIS-DISP-LANLTKMYSLN 138 (347)
T ss_dssp TTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCC-CCGG-GTTCTTCCEEE
T ss_pred CCccEEEccCCccccch---hhhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCccc-Cchh-hccCCceeEEE
Confidence 45677777777666433 16666667777776666653 22 4666666666666666665 2332 44555555555
Q ss_pred eeccCCCCCCCccccC----------------------CCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccC
Q 036674 162 IDTNQLDGSIPPEVGQ----------------------LSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSI 219 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~----------------------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 219 (339)
+++|......+ .+.. +++|++|++++|.+.+..+ +..+++|+.+++++|.+++..
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc
Confidence 55553332222 2344 4444444444444432111 223333333333333333211
Q ss_pred CCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCC
Q 036674 220 PPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYP 298 (339)
Q Consensus 220 ~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 298 (339)
+ +.. ++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..++
T Consensus 216 ~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 287 (347)
T 4fmz_A 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLS 287 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred h--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCC
Confidence 1 122 455555555555544222 44455555555555555432 2344445555555555554432 2244445
Q ss_pred CCCEeecccccCcccCCccccCCCCCCeEEcccCcCccc
Q 036674 299 NLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
+|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 555555555555544444455555555555555555443
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.5e-27 Score=213.85 Aligned_cols=238 Identities=23% Similarity=0.341 Sum_probs=183.5
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCC---------------------ccCCCCCccCeeecc
Q 036674 81 VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIP---------------------PQISNLTNLSDLYLE 139 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---------------------~~~~~l~~L~~L~L~ 139 (339)
..+++.+++++|.+++. +.+.++++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 87 l~~L~~L~L~~n~i~~~---~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163 (347)
T ss_dssp CTTCCEEECCSSCCCCC---GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECC
T ss_pred CCcCCEEEccCCcccCc---hHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEec
Confidence 35677777777776642 246677777777777766653211 124444555555555
Q ss_pred CCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccC
Q 036674 140 GDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSI 219 (339)
Q Consensus 140 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 219 (339)
+|.+.+ ++. +..+++|++|++++|.+.+ ++. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..
T Consensus 164 ~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 164 ESKVKD-VTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp SSCCCC-CGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CCCcCC-chh-hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc
Confidence 555542 222 6677788888888888774 333 7899999999999999985444 888999999999999998544
Q ss_pred CCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCC
Q 036674 220 PPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYP 298 (339)
Q Consensus 220 ~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 298 (339)
+ +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..++.++
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred c--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 4 444 9999999999999874 5688999999999999999864 3588999999999999999999999999999
Q ss_pred CCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 299 NLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
+|++|++++|++++..| +..+++|+.|++++|+|+
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999999996655 889999999999999986
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1e-28 Score=234.71 Aligned_cols=252 Identities=23% Similarity=0.226 Sum_probs=178.4
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcC-cCchhhcCCCCCcE
Q 036674 81 VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSG-NIPPEVGLMSHLKF 159 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~ 159 (339)
..+++.+++++|.+.+.. +..+.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+ ..|..+.++++|++
T Consensus 49 l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCcccEEECCCCCcCccC-hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 467999999999998766 6789999999999999999997777779999999999999999985 35678899999999
Q ss_pred EEeeccCCCCCCC-ccccCCCCCcEEEeecCcCCCCCCCCCCC------------------------CCCCceeeccccc
Q 036674 160 LYIDTNQLDGSIP-PEVGQLSSLVELFLFFNHLSGSVPPSLGN------------------------LTNLQELILFCNN 214 (339)
Q Consensus 160 L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~------------------------l~~L~~L~l~~n~ 214 (339)
|++++|.+.+.+| ..+.++++|++|++++|.+.+..|..+.. +++|++|++++|.
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 9999998544554 57899999999999999998877777655 4556666666666
Q ss_pred CcccC--CCCCCC-------------------------------------------------------------------
Q 036674 215 LSGSI--PPSLDN------------------------------------------------------------------- 225 (339)
Q Consensus 215 l~~~~--~~~~~~------------------------------------------------------------------- 225 (339)
+++.. +..+..
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 65421 000000
Q ss_pred ----------------------CCCcEEeCCCCCCCCCCchhh-cCCCccceeeccccccCCCchHh---hhcCCCCcEE
Q 036674 226 ----------------------PMLTRLDLDFNHFTSYLPHNV-CRGGALQNFTVAENHFQGTIPKS---LRNCTSLIRV 279 (339)
Q Consensus 226 ----------------------~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~L~~L 279 (339)
++|++|++++|.+.. +|..+ ..+++|++|++++|.+++..|.. +..+++|++|
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 123444444444432 33333 35667777777777776554332 4566677777
Q ss_pred Eccccccccccc--hhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 280 RVNGNNLTGNIS--EALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 280 ~l~~n~l~~~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
++++|++++..+ ..++.+++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 777777665432 34566777777777777776 55666666666666666666654
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=218.25 Aligned_cols=258 Identities=17% Similarity=0.171 Sum_probs=211.1
Q ss_pred CCCCCcccceEeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCc
Q 036674 67 KTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGN 146 (339)
Q Consensus 67 ~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 146 (339)
....|.|.++ | +.++++++.. |..+ .++|++|++++|.+++..+..+.++++|++|++++|.+.+.
T Consensus 26 ~~~~C~~~~~-c---------~~~~~~l~~i--P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 26 ASLSCDRNGI-C---------KGSSGSLNSI--PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp -CCEECTTSE-E---------ECCSTTCSSC--CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cCCCCCCCeE-e---------eCCCCCcccc--cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence 3456788776 5 3345555532 2222 35899999999999876666899999999999999999977
Q ss_pred CchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCC-CCCCCCCCCceeeccccc-CcccCCCCCC
Q 036674 147 IPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVP-PSLGNLTNLQELILFCNN-LSGSIPPSLD 224 (339)
Q Consensus 147 ~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~~~ 224 (339)
.|..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 77889999999999999999995555558999999999999999985433 478899999999999994 6655566676
Q ss_pred C-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhc---CCCCCC
Q 036674 225 N-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEAL---GIYPNL 300 (339)
Q Consensus 225 ~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~~~~L 300 (339)
. ++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+ ...+.+
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 6 999999999999999889999999999999999999975544556678999999999999997655443 346778
Q ss_pred CEeecccccCcc----cCCccccCCCCCCeEEcccCcCcccCC
Q 036674 301 NYIDLSRNNFYG----EISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 301 ~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
+.++++++.+.+ .+|..+..+++|+.|++++|+++ .||
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~ 293 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVP 293 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCC
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccC
Confidence 999999998875 46778899999999999999998 444
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=2e-27 Score=205.63 Aligned_cols=218 Identities=21% Similarity=0.200 Sum_probs=182.9
Q ss_pred CCCCcccceEeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcC
Q 036674 68 TSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNI 147 (339)
Q Consensus 68 ~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 147 (339)
.+.|.|.|+.|...+..+.+++++++++. + +..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-I-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-C-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-c-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36799999998755667889999999885 3 3323 268999999999998776778999999999999999998544
Q ss_pred chhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-C
Q 036674 148 PPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-P 226 (339)
Q Consensus 148 p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~ 226 (339)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 455688999999999999998776777889999999999999999877778899999999999999998655555665 8
Q ss_pred CCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccc
Q 036674 227 MLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 227 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 289 (339)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999999999887777788889999999999998877777788888999999999887643
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=2.6e-27 Score=205.54 Aligned_cols=208 Identities=19% Similarity=0.133 Sum_probs=127.5
Q ss_pred CCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEe
Q 036674 107 PHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 186 (339)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888887666667888888888888888887555557778888888888888877666667777788888888
Q ss_pred ecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCc
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTI 266 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 266 (339)
++|.+.+..+..+..+++|++|++++|.+++. .+|..+..+++|++|++++|++++..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCcCC
Confidence 77777755555566666666666666665532 12334444444444444444444433
Q ss_pred hHhhhcCCCCc----EEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCccc
Q 036674 267 PKSLRNCTSLI----RVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 267 ~~~~~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
+..+..+++|+ +|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 33333333333 455555555543333322 23455555555555544344445555555555555555544
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=7.4e-29 Score=219.56 Aligned_cols=237 Identities=17% Similarity=0.120 Sum_probs=126.6
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEee
Q 036674 84 VVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYID 163 (339)
Q Consensus 84 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 163 (339)
+...+++.+.+.... ...+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHH-HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhH-HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 334444444444332 2334445556666666666655445556666666666666666553222 5556666666666
Q ss_pred ccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCC
Q 036674 164 TNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYL 242 (339)
Q Consensus 164 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~ 242 (339)
+|.+++ +...++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+.. ++|++|++++|.+++..
T Consensus 89 ~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 665542 12235566666666665533322 2445666666666665444444444 55666666666665544
Q ss_pred chhhc-CCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCC
Q 036674 243 PHNVC-RGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEY 321 (339)
Q Consensus 243 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l 321 (339)
+..+. .+++|++|++++|.+++. +. ...+++|++|++++|++++..+ .+..+++|++|++++|+++ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcC
Confidence 44442 455666666666665533 21 2235566666666666654333 3555566666666666665 345555556
Q ss_pred CCCCeEEcccCcCc
Q 036674 322 PKLGTLNVSMNNIT 335 (339)
Q Consensus 322 ~~L~~L~l~~n~lt 335 (339)
++|+.|++++|+++
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 66666666666655
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=8.6e-27 Score=217.11 Aligned_cols=235 Identities=24% Similarity=0.357 Sum_probs=137.2
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.|++++|.+.+.. + +.++++|++|++++|.+.+..+ +.++++|++|++++|.+.+ ++. +..+++|++|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT-P--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEE
T ss_pred cCCCEEECCCCccCCch-h--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEE
Confidence 57888888888887654 2 7888888888888888874443 8888888888888888874 443 77788888888
Q ss_pred eeccCCCCCCCc--------------------cccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCC
Q 036674 162 IDTNQLDGSIPP--------------------EVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPP 221 (339)
Q Consensus 162 l~~n~~~~~~p~--------------------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 221 (339)
+++|.+.+ ++. .+.++++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 141 l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 141 LSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-
Confidence 88877663 221 144555666666666665532 235555666666666666554333
Q ss_pred CCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCC
Q 036674 222 SLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNL 300 (339)
Q Consensus 222 ~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 300 (339)
+.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred -ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 222 5555555555555442 234445555555555555543333 4445555555555555543322 3444455
Q ss_pred CEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 301 NYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 301 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 555555554443222 3444444444444444443
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=8.5e-27 Score=224.82 Aligned_cols=111 Identities=21% Similarity=0.228 Sum_probs=94.0
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEE
Q 036674 81 VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFL 160 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (339)
..+++.|+|++|.+++.. +..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|
T Consensus 75 l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153 (635)
T ss_dssp CTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence 357899999999998655 6789999999999999999986666789999999999999999986555578999999999
Q ss_pred EeeccCCCC-CCCccccCCCCCcEEEeecCcCC
Q 036674 161 YIDTNQLDG-SIPPEVGQLSSLVELFLFFNHLS 192 (339)
Q Consensus 161 ~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~ 192 (339)
++++|.+.. ..|..+..+++|++|++++|.+.
T Consensus 154 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 999998865 46777888899999988887654
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.5e-26 Score=215.57 Aligned_cols=239 Identities=25% Similarity=0.349 Sum_probs=117.7
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCc------------
Q 036674 81 VGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIP------------ 148 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p------------ 148 (339)
..+++.++++++.+.+.. .+.++++|++|++++|.+.+. +. +.++++|++|++++|.+.+ ++
T Consensus 89 l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~ 162 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADIT---PLANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLS 162 (466)
T ss_dssp CTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEE
T ss_pred cccCCEEECCCCccccCh---hhcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEee
Confidence 356777777777776554 267777777777777776633 22 5555666666555555442 11
Q ss_pred --------hhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCC--------------------CCCC
Q 036674 149 --------PEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVP--------------------PSLG 200 (339)
Q Consensus 149 --------~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--------------------~~l~ 200 (339)
..+..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+..+ ..+.
T Consensus 163 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 240 (466)
T 1o6v_A 163 FGNQVTDLKPLANLTTLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 240 (466)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred cCCcccCchhhccCCCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhh
Confidence 1133444445555555444321 1 23344444444444443332211 2334
Q ss_pred CCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEE
Q 036674 201 NLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRV 279 (339)
Q Consensus 201 ~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 279 (339)
.+++|++|++++|.+++..+ +.. ++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 44555555555555543222 222 555555555555554322 4455555555555555553322 4455555555
Q ss_pred EccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCccc
Q 036674 280 RVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 280 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
++++|++++..| ++.+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence 555555554433 33444555555555544432 2344445555555555554443
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.3e-26 Score=213.25 Aligned_cols=232 Identities=22% Similarity=0.227 Sum_probs=117.0
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.++++++.+++. + .+..+++|++|++++|.+++. + ++.+++|++|++++|.+.+ ++ ++.+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence 4456666666665542 1 455566666666666665532 2 5556666666666666553 22 55556666666
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccc----------------------cCcccC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCN----------------------NLSGSI 219 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n----------------------~l~~~~ 219 (339)
+++|.+++ +| ++.+++|++|++++|.+++. .+..+++|++|++++| .+++ +
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-e
Confidence 66665553 23 55556666666666655542 1444455555555555 4442 2
Q ss_pred CCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCC
Q 036674 220 PPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYP 298 (339)
Q Consensus 220 ~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 298 (339)
| +.. ++|++|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|++|++++|++++..+..+..+.
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 2 222 4444555554444442 24444555555555555543 23 44455555555555555543332222222
Q ss_pred -------CCCEeecccccCcccCCccccCCCCCCeEEcccCcCcccCC
Q 036674 299 -------NLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 299 -------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
+|+.|++++|.+.+.+| ++.+++|+.|++++|++.|.+|
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred EEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 23334444444333333 2445666666666666655543
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.3e-29 Score=221.79 Aligned_cols=242 Identities=19% Similarity=0.234 Sum_probs=205.5
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.+++++|.+++.. +..+.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++ ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEE
Confidence 47899999999998765 5678999999999999999986544 8999999999999999883 33 348999999
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCC-C-CCCcEEeCCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD-N-PMLTRLDLDFNHFT 239 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~-~~L~~L~l~~n~l~ 239 (339)
+++|.+++..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. . ++|++|++++|.++
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 999999855433 468899999999999987777899999999999999999977666664 3 89999999999998
Q ss_pred CCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCc-ccCCccc
Q 036674 240 SYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFY-GEISSNL 318 (339)
Q Consensus 240 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~l 318 (339)
+. + ....+++|++|++++|.+++. |..+..+++|++|++++|+++ .+|..+..+++|++|++++|++. +.++..+
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 74 3 334589999999999999954 445889999999999999999 56777899999999999999998 7778888
Q ss_pred cCCCCCCeEEcccC-cCcccC
Q 036674 319 GEYPKLGTLNVSMN-NITGGI 338 (339)
Q Consensus 319 ~~l~~L~~L~l~~n-~lt~~i 338 (339)
..+++|+.++++++ .++|..
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSS
T ss_pred hccccceEEECCCchhccCCc
Confidence 99999999998844 555443
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.2e-28 Score=226.76 Aligned_cols=233 Identities=19% Similarity=0.246 Sum_probs=129.7
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.|++++|.+.+.. +..+..+++|++|++++|.+++..| +..+++|++|++++|.+.+ +| ..++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEEC
Confidence 4666666666665543 4455666666666666666654333 5566666666666666552 22 1256666666
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCC-C-CCCcEEeCCCCCCCC
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD-N-PMLTRLDLDFNHFTS 240 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~-~~L~~L~l~~n~l~~ 240 (339)
++|.+++..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+. . ++|++|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 66666533322 345566666666666655555555666666666666666655554443 2 566666666666654
Q ss_pred CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCc-ccCCcccc
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFY-GEISSNLG 319 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~l~ 319 (339)
. + ....+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+.
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 V-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 3 1 12235566666666666654333 35555666666666666653 4444555566666666666655 44455555
Q ss_pred CCCCCCeEEcc
Q 036674 320 EYPKLGTLNVS 330 (339)
Q Consensus 320 ~l~~L~~L~l~ 330 (339)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 55555555553
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=8e-26 Score=195.51 Aligned_cols=203 Identities=22% Similarity=0.281 Sum_probs=157.1
Q ss_pred CCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEe
Q 036674 107 PHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 186 (339)
...+.++++++.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.++...+..|.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35788999998887 5665554 67899999999888555557888899999999998888555556788888999999
Q ss_pred ecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCC
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGT 265 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 265 (339)
++|.+.+..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 988888666667788888888888888887666666655 7888888888888776666677778888888888877766
Q ss_pred chHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcc
Q 036674 266 IPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYG 312 (339)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 312 (339)
.+..|..+++|++|++++|++++..+..+..+++|++|++++|++..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 66667777788888888887776666667777778888888777653
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.6e-28 Score=227.22 Aligned_cols=220 Identities=17% Similarity=0.125 Sum_probs=192.0
Q ss_pred CCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCC
Q 036674 102 SFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSL 181 (339)
Q Consensus 102 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 181 (339)
....+++|++|++++|.+.+..|..|..+++|++|+|++|.+.+..| +..+++|++|++++|.+++. | ..++|
T Consensus 29 l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L 101 (487)
T 3oja_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSI 101 (487)
T ss_dssp TSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTC
T ss_pred hcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCc
Confidence 34456699999999999998888899999999999999999986554 88999999999999998732 2 34899
Q ss_pred cEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhc-CCCccceeeccc
Q 036674 182 VELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVC-RGGALQNFTVAE 259 (339)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~ 259 (339)
++|++++|.+.+..+. .+++|+.|++++|.+++..|..+.. ++|++|++++|.+++..|..+. .+++|+.|++++
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 9999999999865554 4678999999999999887877776 9999999999999998887776 789999999999
Q ss_pred cccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCc
Q 036674 260 NHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 260 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt 335 (339)
|.+++..+ ...+++|++|++++|.+++.++. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred Cccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 99986633 34689999999999999976554 8889999999999999994 7777999999999999999997
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=5e-26 Score=210.97 Aligned_cols=231 Identities=20% Similarity=0.211 Sum_probs=158.1
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.+++++|.+++. .++++++|++|++++|.+++ ++ ++++++|++|++++|.+.+ ++ ++.+++|++|++
T Consensus 86 ~L~~L~Ls~N~l~~~----~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 86 NLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDC 155 (457)
T ss_dssp TCSEEECCSSCCSCC----CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCEEECcCCCCcee----ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEEC
Confidence 344444444444431 14444455555555554443 22 4455555555555555543 21 445555555555
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCC
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSY 241 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~ 241 (339)
++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .+.. ++|++|++++|++++
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 555433333 36677888888888888885 44 78899999999999999864 2444 999999999999998
Q ss_pred CchhhcCCCccceeeccccccCCCchHhhhcCC-------CCcEEEccccccccccchhcCCCCCCCEeecccccCcccC
Q 036674 242 LPHNVCRGGALQNFTVAENHFQGTIPKSLRNCT-------SLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEI 314 (339)
Q Consensus 242 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 314 (339)
+| +..+++|+.|++++|++++..+..+..+. +|+.|++++|.+.+.+| ++.+++|++|++++|...+.+
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 55 78899999999999999976554444433 45666667776666665 467899999999999977665
Q ss_pred Cc--------cccCCCCCCeEEcccCcCcc
Q 036674 315 SS--------NLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 315 ~~--------~l~~l~~L~~L~l~~n~lt~ 336 (339)
|. .+..+++|+.|++++|+++|
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred ccCCCcceEechhhcccCCEEECCCCcccc
Confidence 53 35677899999999999987
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.8e-28 Score=215.42 Aligned_cols=227 Identities=19% Similarity=0.185 Sum_probs=192.5
Q ss_pred CCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCc-CcCchhhc-------CCCCCcEEEeeccCCCCCCCcc
Q 036674 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFS-GNIPPEVG-------LMSHLKFLYIDTNQLDGSIPPE 174 (339)
Q Consensus 103 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~-------~l~~L~~L~l~~n~~~~~~p~~ 174 (339)
++..++|+++++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44567899999999999 677766544 999999999984 45776665 7999999999999999889987
Q ss_pred c--cCCCCCcEEEeecCcCCCCCCCCCCCC-----CCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCC--Cch
Q 036674 175 V--GQLSSLVELFLFFNHLSGSVPPSLGNL-----TNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSY--LPH 244 (339)
Q Consensus 175 ~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~--~~~ 244 (339)
+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+++..+..+.. ++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8999999999999999976 8777776 89999999999999877788877 9999999999998764 233
Q ss_pred hh--cCCCccceeeccccccCCC--c-hHhhhcCCCCcEEEccccccccccc-hhcCCCCCCCEeecccccCcccCCccc
Q 036674 245 NV--CRGGALQNFTVAENHFQGT--I-PKSLRNCTSLIRVRVNGNNLTGNIS-EALGIYPNLNYIDLSRNNFYGEISSNL 318 (339)
Q Consensus 245 ~~--~~~~~L~~L~l~~n~l~~~--~-~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~l 318 (339)
.+ ..+++|++|++++|.+++. + ...+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 7899999999999999842 2 2445688999999999999998764 45567899999999999999 777766
Q ss_pred cCCCCCCeEEcccCcCccc
Q 036674 319 GEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 319 ~~l~~L~~L~l~~n~lt~~ 337 (339)
. ++|+.|++++|++++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp C--SEEEEEECCSSCCCSC
T ss_pred c--CCceEEECCCCCCCCC
Confidence 6 8999999999999875
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=1.1e-26 Score=201.18 Aligned_cols=222 Identities=22% Similarity=0.285 Sum_probs=186.6
Q ss_pred EcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCC
Q 036674 88 SLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQL 167 (339)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 167 (339)
++..+.+.+.. ....+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+
T Consensus 25 ~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 25 NLKKKSVTDAV---TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHTCSCTTSEE---CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCC
T ss_pred HhcCccccccc---ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCcc
Confidence 34444554433 4567889999999999886 333 48889999999999999984 3 4788999999999999999
Q ss_pred CCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhh
Q 036674 168 DGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNV 246 (339)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~ 246 (339)
++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++..+..+
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh
Confidence 9777777899999999999999999777777899999999999999998666666666 899999999999998777778
Q ss_pred cCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCC
Q 036674 247 CRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPK 323 (339)
Q Consensus 247 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 323 (339)
..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.++|.+|..++.++.
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 889999999999999998888888899999999999998763 4668899999999999999988876654
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=5.1e-26 Score=196.92 Aligned_cols=206 Identities=26% Similarity=0.267 Sum_probs=156.1
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.+++.++.+... ..+..+++|++|++++|.+.+ + ..+.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~~---~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCCC---TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCcccc---cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 5678888888777642 357778888888888888764 3 3577888888888888888755555677888888888
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTS 240 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~ 240 (339)
+++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 8888887666666788888888888888887666666778888888888888887655555555 788888888888887
Q ss_pred CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCC
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPN 299 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 299 (339)
..+..+..+++|+.|++++|.+.+. +++|+.+++..|.++|.+|.+++.++.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 7776777888888888888877643 456777888888888888877765543
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=4.1e-26 Score=197.92 Aligned_cols=206 Identities=25% Similarity=0.276 Sum_probs=173.6
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
..++.++++++.+++.. +..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccC-HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46999999999998765 66899999999999999999877777899999999999999999977778899999999999
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCC-CCCCCCCCCCCceeecccccCcccCCCCCCC-CCCc----EEeCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGS-VPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLT----RLDLDF 235 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~----~L~l~~ 235 (339)
+++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+.. ++++ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999977776899999999999999999864 5888999999999999999998766555554 5555 788888
Q ss_pred CCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccc
Q 036674 236 NHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 236 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 289 (339)
|.+++..+..+ ...+|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 88876444333 345788888888888866666677888888888888887754
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1.5e-25 Score=195.60 Aligned_cols=204 Identities=20% Similarity=0.167 Sum_probs=153.5
Q ss_pred CCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCC
Q 036674 101 FSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSS 180 (339)
Q Consensus 101 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 180 (339)
..+.++++++.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++. +. ...+++
T Consensus 4 C~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~ 78 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPV 78 (290)
T ss_dssp SEEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTT
T ss_pred ccccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCc
Confidence 45678889999999999887 5665554 6889999999999876677888899999999999988743 33 267888
Q ss_pred CcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccc
Q 036674 181 LVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAE 259 (339)
Q Consensus 181 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 259 (339)
|++|++++|.+. .+|..+..+++|++|++++|++++..+..+.. ++|++|++++|++++..+..+..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 888888888887 66777777888888888888887555555655 7777777777777776666666777777777777
Q ss_pred cccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCc
Q 036674 260 NHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 260 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
|++++..+..+..+++|++|++++|+++ .+|..+...++|++|++++|++.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 7777555555667777777777777776 45555556667777777777764
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=8.8e-25 Score=190.78 Aligned_cols=203 Identities=26% Similarity=0.273 Sum_probs=176.2
Q ss_pred eCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCC
Q 036674 78 CNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHL 157 (339)
Q Consensus 78 c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 157 (339)
|....+++.+++++++++.. +..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+.+ ++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i--p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL--PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC--CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCCcC--CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcC
Confidence 34456789999999998753 2333 3689999999999997778889999999999999999984 4443 789999
Q ss_pred cEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCC
Q 036674 158 KFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFN 236 (339)
Q Consensus 158 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n 236 (339)
++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 78888999999999999999999777788999999999999999999666666666 99999999999
Q ss_pred CCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccccccc
Q 036674 237 HFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTG 288 (339)
Q Consensus 237 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 288 (339)
++++..+..+..+++|+.|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 999877777888999999999999998 667777778899999999998874
No 71
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=2.8e-28 Score=217.52 Aligned_cols=262 Identities=15% Similarity=0.128 Sum_probs=197.7
Q ss_pred CCCCcccceEeCCCCCEEEEEcCCCCCccccCCCCCCCC--CCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcC
Q 036674 68 TSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSF--PHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSG 145 (339)
Q Consensus 68 ~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 145 (339)
..|..|.++.++ ...++.++++++.+.. ..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+.+
T Consensus 34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASD-ESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTC-STTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcC-chhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 344567777664 3457788888887763 234555 7899999999988866555 5678999999999998875
Q ss_pred c-CchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecC-cCCCC-CCCCCCCCCCCceeecccc-cCccc-CC
Q 036674 146 N-IPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFN-HLSGS-VPPSLGNLTNLQELILFCN-NLSGS-IP 220 (339)
Q Consensus 146 ~-~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~ 220 (339)
. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 4 7778888999999999999888777788888999999999998 56542 4555778889999999999 77753 34
Q ss_pred CCCCC-C-CCcEEeCCCC--CCC-CCCchhhcCCCccceeeccccc-cCCCchHhhhcCCCCcEEEccccc-cccccchh
Q 036674 221 PSLDN-P-MLTRLDLDFN--HFT-SYLPHNVCRGGALQNFTVAENH-FQGTIPKSLRNCTSLIRVRVNGNN-LTGNISEA 293 (339)
Q Consensus 221 ~~~~~-~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 293 (339)
..+.. + +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 43444 6 8999999998 455 4456677788999999999998 676777788889999999999984 44443346
Q ss_pred cCCCCCCCEeecccccCcccCCccccCC-CCCCeEEcccCcCcccCC
Q 036674 294 LGIYPNLNYIDLSRNNFYGEISSNLGEY-PKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 294 l~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~lt~~ip 339 (339)
++.+++|++|++++| ++.. .+..+ ..+..|++++|++++..|
T Consensus 268 l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTC
T ss_pred HhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccC
Confidence 778899999999998 4432 22222 236666789999988776
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.7e-24 Score=200.44 Aligned_cols=233 Identities=25% Similarity=0.343 Sum_probs=112.8
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.+++++|.+++ + + .++++++|++|++++|.+++ +|..+ .+|++|++++|.+.+ +| .+.++++|++|++
T Consensus 132 ~L~~L~L~~n~l~~-l-p-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-L-P-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCSS-C-C-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC-C-c-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 56666666666654 3 2 46666666666666666653 33322 356666666666553 44 4556666666666
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCC------------------
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD------------------ 224 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~------------------ 224 (339)
++|.+++ +|... ++|++|++++|.+. .+| .+..+++|++|++++|.+++ +|....
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcc
Confidence 6666553 23211 34555555555554 344 35566666666666666553 222110
Q ss_pred CCCCcEEeCCCCCCCC--CCchhh-------------cCC-CccceeeccccccCCCchHhhhcCCCCcEEEcccccccc
Q 036674 225 NPMLTRLDLDFNHFTS--YLPHNV-------------CRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTG 288 (339)
Q Consensus 225 ~~~L~~L~l~~n~l~~--~~~~~~-------------~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 288 (339)
.++|++|++++|.+++ ..|..+ ... ++|+.|++++|++++ +|.. +++|++|++++|++++
T Consensus 276 ~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE 351 (454)
T ss_dssp CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence 0334444444444433 111110 011 345555555555553 3321 3566666666666663
Q ss_pred ccchhcCCCCCCCEeecccccCcc--cCCccccCC-------------CCCCeEEcccCcCcc--cCC
Q 036674 289 NISEALGIYPNLNYIDLSRNNFYG--EISSNLGEY-------------PKLGTLNVSMNNITG--GIP 339 (339)
Q Consensus 289 ~~~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~lt~--~ip 339 (339)
+|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|+++| .||
T Consensus 352 -lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 352 -VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred -ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 333 35677777777777776 566666655 677777777777776 555
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=2e-27 Score=216.16 Aligned_cols=237 Identities=16% Similarity=0.187 Sum_probs=173.5
Q ss_pred CCCCCCCCCEEeCCCCcCCCC----CCccCCCCCccCeeeccCCC---CcCcCchhh-------cCCCCCcEEEeeccCC
Q 036674 102 SFSSFPHLAYLDLSHNELFGT----IPPQISNLTNLSDLYLEGDQ---FSGNIPPEV-------GLMSHLKFLYIDTNQL 167 (339)
Q Consensus 102 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~p~~l-------~~l~~L~~L~l~~n~~ 167 (339)
.+..+++|++|++++|.+.+. ++..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 455677888888888887654 33447778888888888853 444455544 6778888888888888
Q ss_pred CC----CCCccccCCCCCcEEEeecCcCCCCCCCC----CCCC---------CCCceeecccccCcc-cCC---CCCCC-
Q 036674 168 DG----SIPPEVGQLSSLVELFLFFNHLSGSVPPS----LGNL---------TNLQELILFCNNLSG-SIP---PSLDN- 225 (339)
Q Consensus 168 ~~----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~l~~-~~~---~~~~~- 225 (339)
++ .+|..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.++. .++ ..+..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 75 35667778888888888888875333322 3333 788888888888762 333 12223
Q ss_pred CCCcEEeCCCCCCCC-----CCchhhcCCCccceeeccccccC----CCchHhhhcCCCCcEEEccccccccc----cch
Q 036674 226 PMLTRLDLDFNHFTS-----YLPHNVCRGGALQNFTVAENHFQ----GTIPKSLRNCTSLIRVRVNGNNLTGN----ISE 292 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~ 292 (339)
++|++|++++|+++. ..+..+..+++|+.|++++|.++ ..+|..+..+++|++|++++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 788889998888873 23336778888999999999886 45777888889999999999988865 455
Q ss_pred hc--CCCCCCCEeecccccCcc----cCCccc-cCCCCCCeEEcccCcCcccC
Q 036674 293 AL--GIYPNLNYIDLSRNNFYG----EISSNL-GEYPKLGTLNVSMNNITGGI 338 (339)
Q Consensus 293 ~l--~~~~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~lt~~i 338 (339)
.+ +.+++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 56 348889999999999886 466666 56889999999999888754
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.2e-26 Score=209.10 Aligned_cols=251 Identities=16% Similarity=0.141 Sum_probs=195.7
Q ss_pred EEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCC----ccCCCCC-ccCeeeccCCCCcCcCchhhcCC-----C
Q 036674 86 NISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIP----PQISNLT-NLSDLYLEGDQFSGNIPPEVGLM-----S 155 (339)
Q Consensus 86 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~ 155 (339)
..+++.+++.+.+ +..+...++|++|++++|.+.+..+ ..+.+++ +|++|++++|.+.+..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPV-EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHH-HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHH-HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3567888888877 5455666679999999999986665 6778888 89999999999987767777664 9
Q ss_pred CCcEEEeeccCCCCCCCccc----cCC-CCCcEEEeecCcCCCCCCCCC----CC-CCCCceeecccccCcccCCCCC--
Q 036674 156 HLKFLYIDTNQLDGSIPPEV----GQL-SSLVELFLFFNHLSGSVPPSL----GN-LTNLQELILFCNNLSGSIPPSL-- 223 (339)
Q Consensus 156 ~L~~L~l~~n~~~~~~p~~~----~~l-~~L~~L~l~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~~~-- 223 (339)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+++.....+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999987666644 344 899999999999986655443 33 3699999999999885433322
Q ss_pred --CC--CCCcEEeCCCCCCCCCCchhh----cCC-CccceeeccccccCCC----chHhhhc-CCCCcEEEccccccccc
Q 036674 224 --DN--PMLTRLDLDFNHFTSYLPHNV----CRG-GALQNFTVAENHFQGT----IPKSLRN-CTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 224 --~~--~~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~ 289 (339)
.. ++|++|++++|++++..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 22 489999999999987766544 344 5999999999999864 4555655 46999999999999875
Q ss_pred cc----hhcCCCCCCCEeecccccCcc-------cCCccccCCCCCCeEEcccCcCccc
Q 036674 290 IS----EALGIYPNLNYIDLSRNNFYG-------EISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 290 ~~----~~l~~~~~L~~L~L~~n~l~~-------~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
.+ ..+..+++|++|++++|.+.+ .++..+..+++|+.||+++|++.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 44 345678999999999999442 2344677889999999999999765
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=6.7e-25 Score=193.51 Aligned_cols=225 Identities=17% Similarity=0.188 Sum_probs=182.7
Q ss_pred CCCCEEeCCCCcCCCCC-Cc--cCCCCCccCeeeccCCCCcCcCchhh--cCCCCCcEEEeeccCCCCCCC----ccccC
Q 036674 107 PHLAYLDLSHNELFGTI-PP--QISNLTNLSDLYLEGDQFSGNIPPEV--GLMSHLKFLYIDTNQLDGSIP----PEVGQ 177 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~~~-~~--~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~l~~n~~~~~~p----~~~~~ 177 (339)
..++.+.+.++.+.... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35788888887765321 11 12235679999999999998888887 899999999999999987655 34567
Q ss_pred CCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCccc--C-CCC-CCC-CCCcEEeCCCCCCCCCCch----hhcC
Q 036674 178 LSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGS--I-PPS-LDN-PMLTRLDLDFNHFTSYLPH----NVCR 248 (339)
Q Consensus 178 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~-~~~-~~~-~~L~~L~l~~n~l~~~~~~----~~~~ 248 (339)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +.. +.. ++|++|++++|+++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 99999999999999988888999999999999999997642 2 222 234 899999999999975 333 3567
Q ss_pred CCccceeeccccccCCCchHhhhcC---CCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCC
Q 036674 249 GGALQNFTVAENHFQGTIPKSLRNC---TSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLG 325 (339)
Q Consensus 249 ~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 325 (339)
+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999998877777666 79999999999999 5666653 8999999999999954 43 67889999
Q ss_pred eEEcccCcCccc
Q 036674 326 TLNVSMNNITGG 337 (339)
Q Consensus 326 ~L~l~~n~lt~~ 337 (339)
.|++++|+|+.+
T Consensus 298 ~L~L~~N~l~~~ 309 (310)
T 4glp_A 298 NLTLDGNPFLVP 309 (310)
T ss_dssp CEECSSTTTSCC
T ss_pred EEECcCCCCCCC
Confidence 999999999863
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=7.2e-24 Score=202.51 Aligned_cols=223 Identities=27% Similarity=0.330 Sum_probs=133.7
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.|++++|.++. + +. .+++|++|++++|.++ .+|. .+++|++|++++|.+. .+|. .+++|++|++
T Consensus 62 ~L~~L~L~~N~l~~-l-p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 62 HITTLVIPDNNLTS-L-PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWI 128 (622)
T ss_dssp TCSEEEECSCCCSC-C-CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred CCcEEEecCCCCCC-C-CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEEC
Confidence 34444454444442 1 11 3445555555555544 2332 3445555555555544 2333 3344555555
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCC---CC--------------CCCCceeecccccCcccCCCCCCC
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSL---GN--------------LTNLQELILFCNNLSGSIPPSLDN 225 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~--------------l~~L~~L~l~~n~l~~~~~~~~~~ 225 (339)
++|.++ .+|.. +++|++|++++|.+.+ +|..+ .. +++|+.|++++|.+++ +|...
T Consensus 129 ~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~-- 200 (622)
T 3g06_A 129 FGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLP-- 200 (622)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCC--
T ss_pred CCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCcc--
Confidence 555544 23322 2556666666666553 22211 11 1445555555555542 22221
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeec
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDL 305 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 305 (339)
++|+.|++++|.++. +|. .+++|+.|++++|.+++ +| ..+++|++|++++|.+++ +|. .+++|++|++
T Consensus 201 ~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeC
Confidence 455666666665554 222 23778999999998885 44 456899999999999984 444 5789999999
Q ss_pred ccccCcccCCccccCCCCCCeEEcccCcCcccCC
Q 036674 306 SRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 306 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
++|+++ .+|..+..+++|+.|++++|++++.+|
T Consensus 269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 999999 778889999999999999999987653
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=6.2e-25 Score=203.45 Aligned_cols=231 Identities=22% Similarity=0.211 Sum_probs=130.5
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCcc-------------CeeeccCCCCcCcCc
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNL-------------SDLYLEGDQFSGNIP 148 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~p 148 (339)
.++++++++++.+ +.+ |..++++++|++|++++|.+.+.+|..++++++| ++|++++|.++ .+|
T Consensus 11 ~~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred ccchhhhcccCch-hhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 4577778888877 666 5667788888888887777777777777776654 66666666665 233
Q ss_pred hhhcCCCCCcEEEeeccCCCCCCCccc----------------cCC-CCCcEEEeecCcCCCCCCCCCCCCCCCceeecc
Q 036674 149 PEVGLMSHLKFLYIDTNQLDGSIPPEV----------------GQL-SSLVELFLFFNHLSGSVPPSLGNLTNLQELILF 211 (339)
Q Consensus 149 ~~l~~l~~L~~L~l~~n~~~~~~p~~~----------------~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 211 (339)
.. .++|++|++++|.+++ +|..+ ... ++|++|++++|.+.+ +| .+..+++|++|+++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 31 2455555555555543 33211 011 466667777766664 55 46677777777777
Q ss_pred cccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccc
Q 036674 212 CNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNIS 291 (339)
Q Consensus 212 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 291 (339)
+|.+++ +|... .+|++|++++|.+++ +| .+..+++|+.|++++|.+++ +|.. .++|++|++++|.++ .+|
T Consensus 162 ~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 162 NNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp SSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC
T ss_pred CCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc
Confidence 777663 44332 467777777777766 44 46677777777777777764 3322 247777777777776 455
Q ss_pred hhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 292 EALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 292 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
. ++.+++|++|++++|++++ +|.. +++|+.|++++|++++
T Consensus 232 ~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 232 E-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp C-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred c-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 3 6777778888888887774 4432 3567777777776665
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=4.5e-24 Score=187.99 Aligned_cols=189 Identities=26% Similarity=0.397 Sum_probs=96.8
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.++++++.+... +.+..+++|++|++++|.+.+. +. +.++++|++|++++|.+.+ + +.+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~l---~~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI---EGVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccCc---hhhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEE
Confidence 3455555655555432 1355555666666666655532 22 5555666666666655552 2 2455555666666
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTS 240 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~ 240 (339)
+++|.+++ ++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +.. ++|++|++++|.+++
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 66555553 222 5555556666665555553222 4555555555555555553222 222 555555555555554
Q ss_pred CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccc
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLT 287 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 287 (339)
..+ +..+++|++|++++|++++..+ +..+++|++|++++|.++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 222 4455555555555555553332 445555555555555554
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=3.9e-24 Score=181.48 Aligned_cols=196 Identities=20% Similarity=0.149 Sum_probs=133.2
Q ss_pred CCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCC-CcCcCchhhcCCCCCcEEEeec-cCCCCCCCccccCCCCCcEEE
Q 036674 108 HLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQ-FSGNIPPEVGLMSHLKFLYIDT-NQLDGSIPPEVGQLSSLVELF 185 (339)
Q Consensus 108 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~ 185 (339)
++++|++++|.+++..+..|.++++|++|++++|+ +....+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78899999998886666678888999999999887 7744445788888888888887 888766666788888888888
Q ss_pred eecCcCCCCCCCCCCCCCCCc---eeecccc-cCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccc-eeecccc
Q 036674 186 LFFNHLSGSVPPSLGNLTNLQ---ELILFCN-NLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQ-NFTVAEN 260 (339)
Q Consensus 186 l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n 260 (339)
+++|.+.+ +|. +..+++|+ +|++++| .+++. .+..+..+++|+ +|++++|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i-----------------------~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSI-----------------------PVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEE-----------------------CTTTTTTTBSSEEEEECCSC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhc-----------------------CcccccchhcceeEEEcCCC
Confidence 88888874 554 66666665 6666666 55433 333344455555 5555555
Q ss_pred ccCCCchHhhhcCCCCcEEEccccc-cccccchhcCCC-CCCCEeecccccCcccCCccccCCCCCCeEEcccC
Q 036674 261 HFQGTIPKSLRNCTSLIRVRVNGNN-LTGNISEALGIY-PNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMN 332 (339)
Q Consensus 261 ~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 332 (339)
+++...+..+.. ++|++|++++|+ +++..+..+..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 555222233333 566777777773 665555666666 777777777777763 3332 5667777777665
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=4.7e-24 Score=187.86 Aligned_cols=195 Identities=22% Similarity=0.323 Sum_probs=165.1
Q ss_pred CCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCC
Q 036674 102 SFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSL 181 (339)
Q Consensus 102 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 181 (339)
....+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+++ ++ .+..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 109 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSI 109 (308)
T ss_dssp CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence 3556889999999999987 445 5889999999999999998 4555 8999999999999999884 44 68899999
Q ss_pred cEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeecccc
Q 036674 182 VELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAEN 260 (339)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 260 (339)
++|++++|.+.+ ++ .+..+++|++|++++|.+++..+ +.. ++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 110 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 999999999985 34 38899999999999999985433 444 899999999999987433 888999999999999
Q ss_pred ccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcc
Q 036674 261 HFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYG 312 (339)
Q Consensus 261 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 312 (339)
.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9986544 7889999999999999986653 7889999999999999874
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.6e-23 Score=179.07 Aligned_cols=180 Identities=21% Similarity=0.203 Sum_probs=143.4
Q ss_pred CccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeec
Q 036674 131 TNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELIL 210 (339)
Q Consensus 131 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 210 (339)
...++++++++.+. .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35678899988888 6776654 68899999999988777778888999999999999988777777888888888888
Q ss_pred ccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccc
Q 036674 211 FCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 211 ~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 289 (339)
++|.+++..+..+.. ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 888888655555655 8888888888888876666677788888888888888766666777778888888888888877
Q ss_pred cchhcCCCCCCCEeecccccCccc
Q 036674 290 ISEALGIYPNLNYIDLSRNNFYGE 313 (339)
Q Consensus 290 ~~~~l~~~~~L~~L~L~~n~l~~~ 313 (339)
.+..+..+++|++|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 666777778888888888887654
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.6e-23 Score=200.04 Aligned_cols=236 Identities=26% Similarity=0.331 Sum_probs=166.8
Q ss_pred CCCCCcccceEe------C-CCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeecc
Q 036674 67 KTSPCAWYGISC------N-DVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLE 139 (339)
Q Consensus 67 ~~~~c~~~gv~c------~-~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 139 (339)
...+|.|.+..+ . ....++.+++++++++ .+ +..+. ++|++|++++|.++ .+|. .+++|++|+++
T Consensus 18 ~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~l-p~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls 89 (622)
T 3g06_A 18 AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TL-PDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVS 89 (622)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CC-CSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred cCCcchhccccccCcccccccCCCCcEEEecCCCcC-cc-ChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcC
Confidence 445688865322 1 1135899999999998 44 33443 89999999999998 5665 67999999999
Q ss_pred CCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccC
Q 036674 140 GDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSI 219 (339)
Q Consensus 140 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 219 (339)
+|.++ .+|. .+++|++|++++|.++ .+|. .+++|+.|++++|.++. +|.. +++|++|++++|.+++ +
T Consensus 90 ~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l 156 (622)
T 3g06_A 90 GNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-L 156 (622)
T ss_dssp SCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-C
T ss_pred CCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-c
Confidence 99998 6776 6899999999999998 4555 67899999999999984 5553 4889999999998874 3
Q ss_pred CCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhh-----------------hcCCCCcEEEcc
Q 036674 220 PPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSL-----------------RNCTSLIRVRVN 282 (339)
Q Consensus 220 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----------------~~~~~L~~L~l~ 282 (339)
|..+ ++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|..+ ..+++|++|+++
T Consensus 157 ~~~~--~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls 229 (622)
T 3g06_A 157 PALP--SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVS 229 (622)
T ss_dssp CCCC--TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred CCcc--CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEcc
Confidence 4322 456666666666655 33 234555555555555543 11111 123667777777
Q ss_pred ccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcccCC
Q 036674 283 GNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 283 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
+|++++ +| ..+++|++|++++|+++ .+|. .+++|+.|++++|+|+ .||
T Consensus 230 ~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 230 GNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC
T ss_pred CCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC
Confidence 777774 33 34677888888888887 4554 5678888888888887 554
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.5e-23 Score=177.79 Aligned_cols=196 Identities=17% Similarity=0.160 Sum_probs=147.8
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCc-CCCCCCccCCCCCccCeeeccC-CCCcCcCchhhcCCCCCcE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNE-LFGTIPPQISNLTNLSDLYLEG-DQFSGNIPPEVGLMSHLKF 159 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~ 159 (339)
..++.++++++.+++.. +..+.++++|++|++++|. ++...+..|.++++|++|++++ |.+.+..+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 47899999999998765 6689999999999999997 8766666899999999999998 9998655568899999999
Q ss_pred EEeeccCCCCCCCccccCCCCCc---EEEeecC-cCCCCCCCCCCCCCCCc-eeecccccCcccCCCC-CCCCCCcEEeC
Q 036674 160 LYIDTNQLDGSIPPEVGQLSSLV---ELFLFFN-HLSGSVPPSLGNLTNLQ-ELILFCNNLSGSIPPS-LDNPMLTRLDL 233 (339)
Q Consensus 160 L~l~~n~~~~~~p~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~-~~~~~L~~L~l 233 (339)
|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.++ .+|.. +..++|++|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence 9999999985 676 88888888 9999999 88866666788899999 9999998887 44433 33356666666
Q ss_pred CCCC-CCCCCchhhcCC-CccceeeccccccCCCchHhhhcCCCCcEEEcccc
Q 036674 234 DFNH-FTSYLPHNVCRG-GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284 (339)
Q Consensus 234 ~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (339)
++|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6663 655444455555 5555555555555532221 3345555554443
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=1.1e-26 Score=215.89 Aligned_cols=253 Identities=20% Similarity=0.193 Sum_probs=141.9
Q ss_pred CEEEEEcCCCCCcc----ccCCCCCCCCCCCCEEeCCCCcCCCCCCcc-----CCCCCccCeeeccCCCCcCc----Cch
Q 036674 83 RVVNISLPAKGLKG----KLHDFSFSSFPHLAYLDLSHNELFGTIPPQ-----ISNLTNLSDLYLEGDQFSGN----IPP 149 (339)
Q Consensus 83 ~v~~l~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~----~p~ 149 (339)
+++.+++++|.+.. .+ +..+..+++|++|++++|.+.+..+.. ....++|++|++++|.+.+. ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVL-SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHH-HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHH-HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 57777777777763 23 445677777777777777765332222 12245566666666666542 234
Q ss_pred hhcCCCCCcEEEeeccCCCCCCCcccc-----CCCCCcEEEeecCcCCCC----CCCCCCCCCCCceeecccccCccc--
Q 036674 150 EVGLMSHLKFLYIDTNQLDGSIPPEVG-----QLSSLVELFLFFNHLSGS----VPPSLGNLTNLQELILFCNNLSGS-- 218 (339)
Q Consensus 150 ~l~~l~~L~~L~l~~n~~~~~~p~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~-- 218 (339)
.+..+++|++|++++|.+++..+..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+++.
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 445556666666666655432222221 234555555555555432 233334445555555555544321
Q ss_pred -------------------------------CCCCCCC-CCCcEEeCCCCCCCCCCchhhcC-----CCccceeeccccc
Q 036674 219 -------------------------------IPPSLDN-PMLTRLDLDFNHFTSYLPHNVCR-----GGALQNFTVAENH 261 (339)
Q Consensus 219 -------------------------------~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~ 261 (339)
++..+.. ++|++|++++|.+++..+..+.. .++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 1222221 44555555555443322222211 1455666666665
Q ss_pred cCCC----chHhhhcCCCCcEEEccccccccccchhcCC-----CCCCCEeecccccCcc----cCCccccCCCCCCeEE
Q 036674 262 FQGT----IPKSLRNCTSLIRVRVNGNNLTGNISEALGI-----YPNLNYIDLSRNNFYG----EISSNLGEYPKLGTLN 328 (339)
Q Consensus 262 l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~ 328 (339)
+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .++..+..+++|+.|+
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 5543 3455566677778888777777654443322 5678888888888775 5666777788888888
Q ss_pred cccCcCcc
Q 036674 329 VSMNNITG 336 (339)
Q Consensus 329 l~~n~lt~ 336 (339)
+++|++++
T Consensus 405 l~~N~i~~ 412 (461)
T 1z7x_W 405 LSNNCLGD 412 (461)
T ss_dssp CCSSSCCH
T ss_pred CCCCCCCH
Confidence 88888764
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=7.1e-23 Score=175.03 Aligned_cols=179 Identities=21% Similarity=0.215 Sum_probs=161.7
Q ss_pred CCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEee
Q 036674 108 HLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLF 187 (339)
Q Consensus 108 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 187 (339)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4578999999987 6676665 689999999999997777789999999999999999998888889999999999999
Q ss_pred cCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCc
Q 036674 188 FNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTI 266 (339)
Q Consensus 188 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 266 (339)
+|.+.+..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999777788899999999999999999666666666 99999999999999877778999999999999999999888
Q ss_pred hHhhhcCCCCcEEEccccccccc
Q 036674 267 PKSLRNCTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 267 ~~~~~~~~~L~~L~l~~n~l~~~ 289 (339)
+..+..+++|++|++++|.+.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 88899999999999999999875
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=6.6e-24 Score=187.13 Aligned_cols=224 Identities=21% Similarity=0.222 Sum_probs=180.0
Q ss_pred CEEEEEcCCCCCccccCC--CCCCCCCCCCEEeCCCCcCCCCCCccC--CCCCccCeeeccCCCCcCcCc----hhhcCC
Q 036674 83 RVVNISLPAKGLKGKLHD--FSFSSFPHLAYLDLSHNELFGTIPPQI--SNLTNLSDLYLEGDQFSGNIP----PEVGLM 154 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l 154 (339)
+++.+.+....+...... ..+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456677776666432100 012234679999999999998888888 999999999999999986554 345679
Q ss_pred CCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCC--C--CCCCCCCCCCceeecccccCcccCCC----CCCC-
Q 036674 155 SHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGS--V--PPSLGNLTNLQELILFCNNLSGSIPP----SLDN- 225 (339)
Q Consensus 155 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~- 225 (339)
++|++|++++|.+.+..+..++.+++|++|++++|.+.+. + +..+..+++|++|++++|.++. ++. .+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999988888999999999999999997642 2 2334688999999999999972 222 1233
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCC---CccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCE
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRG---GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNY 302 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 302 (339)
++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 899999999999999878777776 69999999999999 6666553 8999999999999964 33 578899999
Q ss_pred eecccccCcc
Q 036674 303 IDLSRNNFYG 312 (339)
Q Consensus 303 L~L~~n~l~~ 312 (339)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999874
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=1.6e-26 Score=214.87 Aligned_cols=232 Identities=18% Similarity=0.134 Sum_probs=157.1
Q ss_pred CCCCCCEEeCCCCcCCCCCCccCC-----CCCccCeeeccCCCCcCc----CchhhcCCCCCcEEEeeccCCCCCC----
Q 036674 105 SFPHLAYLDLSHNELFGTIPPQIS-----NLTNLSDLYLEGDQFSGN----IPPEVGLMSHLKFLYIDTNQLDGSI---- 171 (339)
Q Consensus 105 ~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~~---- 171 (339)
.+++|++|++++|.+.+..+..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+++..
T Consensus 168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 344555555555554322222221 234566666666655532 3455556677777777777665321
Q ss_pred -CccccCCCCCcEEEeecCcCCCC----CCCCCCCCCCCceeecccccCcccCCCCCC----C--CCCcEEeCCCCCCCC
Q 036674 172 -PPEVGQLSSLVELFLFFNHLSGS----VPPSLGNLTNLQELILFCNNLSGSIPPSLD----N--PMLTRLDLDFNHFTS 240 (339)
Q Consensus 172 -p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~--~~L~~L~l~~n~l~~ 240 (339)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. . ++|++|++++|.+++
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 11223467777888877777643 455566789999999999988754332222 1 599999999999987
Q ss_pred C----CchhhcCCCccceeeccccccCCCchHhhhc-----CCCCcEEEcccccccc----ccchhcCCCCCCCEeeccc
Q 036674 241 Y----LPHNVCRGGALQNFTVAENHFQGTIPKSLRN-----CTSLIRVRVNGNNLTG----NISEALGIYPNLNYIDLSR 307 (339)
Q Consensus 241 ~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~L~~ 307 (339)
. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+++|++|++++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 5 4566777899999999999998765555543 6899999999999997 6788888899999999999
Q ss_pred ccCcccCCcc----cc-CCCCCCeEEcccCcCcc
Q 036674 308 NNFYGEISSN----LG-EYPKLGTLNVSMNNITG 336 (339)
Q Consensus 308 n~l~~~~~~~----l~-~l~~L~~L~l~~n~lt~ 336 (339)
|++++.-... +. ...+|+.|++.++.+..
T Consensus 408 N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 9998542211 21 24578888888877653
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.2e-25 Score=202.65 Aligned_cols=234 Identities=18% Similarity=0.227 Sum_probs=189.3
Q ss_pred CCEEEEEcCCCCCccccC---CCCCCCCCCCCEEeCCCCc---CCCCCCccC-------CCCCccCeeeccCCCCcC---
Q 036674 82 GRVVNISLPAKGLKGKLH---DFSFSSFPHLAYLDLSHNE---LFGTIPPQI-------SNLTNLSDLYLEGDQFSG--- 145 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~n~---~~~~~~~~~-------~~l~~L~~L~L~~n~l~~--- 145 (339)
.+++.|++++|.+.+... ...+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.+.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 568999999999876531 2347889999999999964 444556554 789999999999999986
Q ss_pred -cCchhhcCCCCCcEEEeeccCCCCCCCcc----ccCC---------CCCcEEEeecCcCCC-CCC---CCCCCCCCCce
Q 036674 146 -NIPPEVGLMSHLKFLYIDTNQLDGSIPPE----VGQL---------SSLVELFLFFNHLSG-SVP---PSLGNLTNLQE 207 (339)
Q Consensus 146 -~~p~~l~~l~~L~~L~l~~n~~~~~~p~~----~~~l---------~~L~~L~l~~n~~~~-~~~---~~l~~l~~L~~ 207 (339)
.+|..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.+.. ..+ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 47778899999999999999986443333 3344 899999999999873 333 35667889999
Q ss_pred eecccccCcc-----cCCCCCCC-CCCcEEeCCCCCCC----CCCchhhcCCCccceeeccccccCCC----chHhhhc-
Q 036674 208 LILFCNNLSG-----SIPPSLDN-PMLTRLDLDFNHFT----SYLPHNVCRGGALQNFTVAENHFQGT----IPKSLRN- 272 (339)
Q Consensus 208 L~l~~n~l~~-----~~~~~~~~-~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~- 272 (339)
|++++|.++. ..+..+.. ++|++|++++|.++ ..++..+..+++|+.|++++|.+++. ++..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999873 34435555 89999999999996 55778889999999999999999865 4666644
Q ss_pred -CCCCcEEEcccccccc----ccchhc-CCCCCCCEeecccccCcccCC
Q 036674 273 -CTSLIRVRVNGNNLTG----NISEAL-GIYPNLNYIDLSRNNFYGEIS 315 (339)
Q Consensus 273 -~~~L~~L~l~~n~l~~----~~~~~l-~~~~~L~~L~L~~n~l~~~~~ 315 (339)
+++|++|++++|.+++ .+|..+ .++++|++|++++|++++..+
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8999999999999997 477776 668999999999999987653
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.4e-24 Score=193.56 Aligned_cols=224 Identities=20% Similarity=0.225 Sum_probs=187.0
Q ss_pred CCCEEeCCCCcCCCCCCccCCCC--CccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCC-CCccccCCCCCcEE
Q 036674 108 HLAYLDLSHNELFGTIPPQISNL--TNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGS-IPPEVGQLSSLVEL 184 (339)
Q Consensus 108 ~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L 184 (339)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4789999999876 4556666 8999999999999865544 56799999999999998755 77788999999999
Q ss_pred EeecCcCCCCCCCCCCCCCCCceeecccc-cCccc-CCCCCCC-CCCcEEeCCCC-CCCCC-CchhhcCCC-ccceeecc
Q 036674 185 FLFFNHLSGSVPPSLGNLTNLQELILFCN-NLSGS-IPPSLDN-PMLTRLDLDFN-HFTSY-LPHNVCRGG-ALQNFTVA 258 (339)
Q Consensus 185 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~-~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l~ 258 (339)
++++|.+.+..+..+..+++|++|++++| .+++. ++..+.. ++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999988777888888999999999999 57652 4444444 89999999999 88864 567788899 99999999
Q ss_pred cc--ccC-CCchHhhhcCCCCcEEEccccc-cccccchhcCCCCCCCEeeccccc-CcccCCccccCCCCCCeEEcccCc
Q 036674 259 EN--HFQ-GTIPKSLRNCTSLIRVRVNGNN-LTGNISEALGIYPNLNYIDLSRNN-FYGEISSNLGEYPKLGTLNVSMNN 333 (339)
Q Consensus 259 ~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 333 (339)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 455 4567788899999999999998 777778888999999999999995 43333336788999999999999
Q ss_pred Ccc
Q 036674 334 ITG 336 (339)
Q Consensus 334 lt~ 336 (339)
++.
T Consensus 283 i~~ 285 (336)
T 2ast_B 283 VPD 285 (336)
T ss_dssp SCT
T ss_pred cCH
Confidence 553
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=2.9e-22 Score=179.60 Aligned_cols=243 Identities=12% Similarity=0.057 Sum_probs=174.3
Q ss_pred CCcccceEeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCch
Q 036674 70 PCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPP 149 (339)
Q Consensus 70 ~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 149 (339)
.|.+..|.|. +++++. + |..+ .+++++|+|++|.++...+..|.++++|++|+|++|.+.+.+|.
T Consensus 8 ~C~~~~v~C~-----------~~~Lt~-i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 8 HCSNRVFLCQ-----------ESKVTE-I-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72 (350)
T ss_dssp EEETTEEEEE-----------STTCCS-C-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred EeeCCEEEec-----------CCCCCc-c-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh
Confidence 3677777774 233432 2 2223 35789999999998855556789999999999999988655654
Q ss_pred -hhcCCCCCcE-EEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeeccc-ccCcccCCCCCCC-
Q 036674 150 -EVGLMSHLKF-LYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFC-NNLSGSIPPSLDN- 225 (339)
Q Consensus 150 -~l~~l~~L~~-L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~- 225 (339)
.|.+++++++ +.++.|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..
T Consensus 73 ~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence 5678888765 55667888867778888999999999999998866666666677788888866 4555333444444
Q ss_pred -CCCcEEeCCCCCCCCCCchhhcCCCccceeeccc-cccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEe
Q 036674 226 -PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAE-NHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYI 303 (339)
Q Consensus 226 -~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 303 (339)
..++.|++++|+++. ++.......+|+.+++.+ |.++...+..|..+++|++|++++|+++...+.. +.+|++|
T Consensus 153 ~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L 228 (350)
T 4ay9_X 153 SFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKL 228 (350)
T ss_dssp BSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEE
T ss_pred chhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHh
Confidence 568889999999886 444445567888999875 5566444567888899999999999988554433 5566777
Q ss_pred ecccccCcccCCccccCCCCCCeEEcccC
Q 036674 304 DLSRNNFYGEISSNLGEYPKLGTLNVSMN 332 (339)
Q Consensus 304 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 332 (339)
.+.++.-...+|. +..+++|+.+++.++
T Consensus 229 ~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 229 RARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 6666554446664 788899999998764
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.1e-21 Score=162.84 Aligned_cols=185 Identities=23% Similarity=0.289 Sum_probs=133.9
Q ss_pred CCCCcccceEeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcC
Q 036674 68 TSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNI 147 (339)
Q Consensus 68 ~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 147 (339)
...|.|.++.|... +++. + + ..-.++|++|++++|.+++..+..+.++++|++|++++|.+.+..
T Consensus 4 ~C~C~~~~v~c~~~-----------~l~~-~-p--~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYSQ-----------GRTS-V-P--TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCSS-----------CCSS-C-C--SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecCC-----------CccC-C-C--CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 34588999988632 2221 1 1 223468999999999998666667889999999999999998555
Q ss_pred chhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-C
Q 036674 148 PPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-P 226 (339)
Q Consensus 148 p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~ 226 (339)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 556788899999999999888666666788889999999888888666666777888888888888777544444554 6
Q ss_pred CCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCC
Q 036674 227 MLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCT 274 (339)
Q Consensus 227 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 274 (339)
+|++|++++|.+.+ .+++|+.|+++.|++++.+|..++.++
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 77777777776553 234566666666666666666554443
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.6e-24 Score=192.91 Aligned_cols=225 Identities=15% Similarity=0.090 Sum_probs=181.0
Q ss_pred EEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCc----hhhcCCC-CCcEEEeeccCCCCCCCccccCC-----CC
Q 036674 111 YLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIP----PEVGLMS-HLKFLYIDTNQLDGSIPPEVGQL-----SS 180 (339)
Q Consensus 111 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l-----~~ 180 (339)
+.+++.|.+++.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46789999998888877777889999999999986655 6778888 99999999999987777777665 99
Q ss_pred CcEEEeecCcCCCCCCCCCC----CC-CCCceeecccccCcccCCCCCC----C--CCCcEEeCCCCCCCCCCc----hh
Q 036674 181 LVELFLFFNHLSGSVPPSLG----NL-TNLQELILFCNNLSGSIPPSLD----N--PMLTRLDLDFNHFTSYLP----HN 245 (339)
Q Consensus 181 L~~L~l~~n~~~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~~~~~~----~--~~L~~L~l~~n~l~~~~~----~~ 245 (339)
|++|++++|.+.+..+..+. .+ ++|++|++++|.+++..+..+. . ++|++|++++|.+++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999876665443 44 8999999999999865554332 2 589999999999986443 34
Q ss_pred hcCCC-ccceeeccccccCCCchHhh----hcC-CCCcEEEccccccccc----cchhcCC-CCCCCEeecccccCcccC
Q 036674 246 VCRGG-ALQNFTVAENHFQGTIPKSL----RNC-TSLIRVRVNGNNLTGN----ISEALGI-YPNLNYIDLSRNNFYGEI 314 (339)
Q Consensus 246 ~~~~~-~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~l~~~----~~~~l~~-~~~L~~L~L~~n~l~~~~ 314 (339)
+...+ +|++|++++|++++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 99999999999987776544 445 5999999999999873 4445544 469999999999998643
Q ss_pred C----ccccCCCCCCeEEcccCcCc
Q 036674 315 S----SNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 315 ~----~~l~~l~~L~~L~l~~n~lt 335 (339)
+ ..+..+++|+.|++++|.++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHHHhcCCCccEEEeccCCcc
Confidence 3 44577899999999999843
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1e-21 Score=162.89 Aligned_cols=180 Identities=20% Similarity=0.208 Sum_probs=99.8
Q ss_pred CEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecC
Q 036674 110 AYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFN 189 (339)
Q Consensus 110 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 189 (339)
+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666665 444333 346777777777776444445666777777777777776544445566667777777766
Q ss_pred cCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHh
Q 036674 190 HLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKS 269 (339)
Q Consensus 190 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 269 (339)
.+.+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------------------~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDG-----------------------VFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------------------TTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHh-----------------------HhccCCcCCEEECCCCccceeCHHH
Confidence 66644444455666666666666655533333 3344444444444444444333333
Q ss_pred hhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCC
Q 036674 270 LRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYP 322 (339)
Q Consensus 270 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 322 (339)
+..+++|++|++++|.+.+ .+++|++|+++.|+++|.+|..++.++
T Consensus 144 ~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred hccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 4445555555555554332 234455555555555555555544443
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=2.5e-21 Score=182.88 Aligned_cols=187 Identities=23% Similarity=0.285 Sum_probs=156.5
Q ss_pred CCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEee
Q 036674 108 HLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLF 187 (339)
Q Consensus 108 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 187 (339)
+++.|++++|.+++ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 79999999999985 77655 388999999999998 777 558999999999999996 777 655 99999999
Q ss_pred cCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCch
Q 036674 188 FNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIP 267 (339)
Q Consensus 188 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 267 (339)
+|.+++ +|. .+++|+.|++++|.+++ +|. ..++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 999986 665 68999999999999985 665 23889999999999988 665 55 89999999999998 555
Q ss_pred HhhhcCCCC-------cEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCC
Q 036674 268 KSLRNCTSL-------IRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEY 321 (339)
Q Consensus 268 ~~~~~~~~L-------~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l 321 (339)
. +.. +| +.|++++|.++ .+|..+..+++|++|+|++|++++.+|..+..+
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 5 543 66 99999999998 567777779999999999999998888776654
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.9e-21 Score=183.79 Aligned_cols=197 Identities=26% Similarity=0.322 Sum_probs=165.2
Q ss_pred cccce-EeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchh
Q 036674 72 AWYGI-SCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPE 150 (339)
Q Consensus 72 ~~~gv-~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 150 (339)
.|.++ .|. .++++.|+++++++++ + +..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-l-p~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECL-INQFSELQLNRLNLSS-L-PDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHH-HTTCSEEECCSSCCSC-C-CSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhccccc-cCCccEEEeCCCCCCc-c-CHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 68888 564 3579999999999987 5 3434 488999999999998 677 567999999999999995 777
Q ss_pred hcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcE
Q 036674 151 VGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTR 230 (339)
Q Consensus 151 l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 230 (339)
+.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~ 184 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEA 184 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCE
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCE
Confidence 655 99999999999996 666 68999999999999985 665 57899999999999996 676 55 89999
Q ss_pred EeCCCCCCCCCCchhhcCCCcc-------ceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCC
Q 036674 231 LDLDFNHFTSYLPHNVCRGGAL-------QNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIY 297 (339)
Q Consensus 231 L~l~~n~l~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 297 (339)
|++++|+++. +|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 185 L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 185 LDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred EECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9999999995 565 544 77 99999999999 577777789999999999999999888877654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=4e-20 Score=165.69 Aligned_cols=222 Identities=17% Similarity=0.101 Sum_probs=169.9
Q ss_pred CEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCc-hhhcCCCCCcEEEeeccCCCCCCC-ccccCCCCCcE-EEe
Q 036674 110 AYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIP-PEVGLMSHLKFLYIDTNQLDGSIP-PEVGQLSSLVE-LFL 186 (339)
Q Consensus 110 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~-L~l 186 (339)
++++.++++++ .+|..+ .+++++|+|++|+++ .+| ..|.++++|++|++++|.+.+.+| ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56788888887 677666 368999999999999 555 478999999999999999876555 46889998876 566
Q ss_pred ecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCC-CCCCCCCchhhcCCC-ccceeeccccccC
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDF-NHFTSYLPHNVCRGG-ALQNFTVAENHFQ 263 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~n~l~ 263 (339)
..|.+....|..+..+++|++|++++|.+....+..+.. .++..+++.+ +.+....+..+..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 778998777889999999999999999998555544444 7788888865 556654555566654 6899999999998
Q ss_pred CCchHhhhcCCCCcEEEccc-cccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcccCC
Q 036674 264 GTIPKSLRNCTSLIRVRVNG-NNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGIP 339 (339)
Q Consensus 264 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ip 339 (339)
...+..+ ..++|+++++.+ |.++...+++++.+++|++|++++|+++...+.. +.+|+.|.+.++.--..+|
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC
Confidence 5444444 557899999985 6777555678899999999999999999544433 4566666666554334443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.1e-20 Score=162.02 Aligned_cols=188 Identities=22% Similarity=0.333 Sum_probs=149.5
Q ss_pred CCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeec
Q 036674 109 LAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFF 188 (339)
Q Consensus 109 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 188 (339)
+..+.+..+.+.+..+ +..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 3344566666553322 457889999999999987 444 47889999999999999985443 88999999999999
Q ss_pred CcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCch
Q 036674 189 NHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIP 267 (339)
Q Consensus 189 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 267 (339)
|.+.+ + ..+..+++|++|++++|.+++ ++ .+.. ++|++|++++|++++. ..+..+++|+.|++++|.+++..+
T Consensus 100 n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKD-L-SSLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCC-G-GGGTTCTTCCEEECTTSCCCC-CG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCC-C-hhhccCCCCCEEECCCCcCCC-Ch-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 99874 3 348889999999999999885 33 3334 8899999999998875 578888999999999999986655
Q ss_pred HhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcc
Q 036674 268 KSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYG 312 (339)
Q Consensus 268 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 312 (339)
+..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred --hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 88889999999999998854 3 37888999999999998874
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=2.4e-20 Score=177.93 Aligned_cols=185 Identities=21% Similarity=0.365 Sum_probs=129.1
Q ss_pred EcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCC
Q 036674 88 SLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQL 167 (339)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 167 (339)
.+..+.+.+.. .+..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+ +++ +..+++|+.|++++|.+
T Consensus 27 ~l~~~~i~~~~---~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 27 NLKKKSVTDAV---TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HTTCSCTTSEE---CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC
T ss_pred hccCCCccccc---chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCC
Confidence 34444444433 3456778888888888876 333 47788888888888888874 333 77888888888888887
Q ss_pred CCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhh
Q 036674 168 DGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNV 246 (339)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~ 246 (339)
.+ +| .+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+.. ++|+.|+|++|.+++..+ +
T Consensus 100 ~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 100 KD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp CC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 73 33 57778888888888888774 2 3577777888888888777743 23333 777777777777776544 6
Q ss_pred cCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccc
Q 036674 247 CRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 247 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 289 (339)
..+++|+.|+|++|.+++. + .+..+++|+.|++++|.+.+.
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred ccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 7777777777777777643 3 466777777777777777654
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=3.1e-20 Score=162.06 Aligned_cols=187 Identities=21% Similarity=0.351 Sum_probs=155.3
Q ss_pred EcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCC
Q 036674 88 SLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQL 167 (339)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 167 (339)
.+....+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+
T Consensus 30 ~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 30 NLKKKSVTDAV---TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HTTCSCTTSEE---CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred HhcCCCccccc---chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcC
Confidence 34445554433 45678899999999999874 44 48899999999999999984 444 89999999999999999
Q ss_pred CCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhh
Q 036674 168 DGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNV 246 (339)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~ 246 (339)
++ ++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+.. ++|++|++++|.+++..+ +
T Consensus 103 ~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 84 44 489999999999999999853 4688899999999999999854 34444 999999999999998554 8
Q ss_pred cCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccc
Q 036674 247 CRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNIS 291 (339)
Q Consensus 247 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 291 (339)
..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.++....
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 899999999999999985 44 38899999999999999886433
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=5.9e-20 Score=153.64 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=89.3
Q ss_pred cEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCC-CCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCC
Q 036674 158 KFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVP-PSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDF 235 (339)
Q Consensus 158 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~ 235 (339)
+.+++++|.++ .+|..+. ..+++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+.. ++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777766 4555432 345667777777665433 33566666666666666666544444544 5666666666
Q ss_pred CCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCc
Q 036674 236 NHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 236 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666555555555666666666666665555555555566666666666665555555555566666666666554
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=8.6e-20 Score=152.62 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=102.1
Q ss_pred cEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCC
Q 036674 158 KFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFN 236 (339)
Q Consensus 158 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n 236 (339)
+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. ++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46777777776 5565443 57777777777777655566777777777777777777666666665 67777777777
Q ss_pred CCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCc
Q 036674 237 HFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 237 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
.++...+..|..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 776655555666667777777777766666666666666777777776666665556666666666666666654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=5.6e-20 Score=175.39 Aligned_cols=169 Identities=24% Similarity=0.319 Sum_probs=108.1
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
.+++.|+++++.+... +.+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ +| .+..+++|++|+
T Consensus 43 ~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCCCC---TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCCC---hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 4566666766666542 246667777777777777664333 6667777777777777662 33 566677777777
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTS 240 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~ 240 (339)
+++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| +.. ++|+.|+|++|.+++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 77777663 2 3466677777777777776643 456666777777777777665444 333 677777777777665
Q ss_pred CCchhhcCCCccceeeccccccCCC
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGT 265 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~ 265 (339)
. ..+..+++|+.|++++|++.+.
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEECC
T ss_pred C--hHHccCCCCCEEEccCCcCcCC
Confidence 3 3466667777777777766643
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=3.5e-20 Score=166.77 Aligned_cols=175 Identities=21% Similarity=0.159 Sum_probs=118.5
Q ss_pred CeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCcccc-CCCCCcEEEeecCcCCCCCCCCCCCCCCCceeeccc
Q 036674 134 SDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVG-QLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFC 212 (339)
Q Consensus 134 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 212 (339)
+.++++++.+. .+|..+. ..++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888877 5676543 4578888888888766666666 788888888888888766666777778888888888
Q ss_pred ccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhh---hcCCCCcEEEcccccccc
Q 036674 213 NNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSL---RNCTSLIRVRVNGNNLTG 288 (339)
Q Consensus 213 n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~ 288 (339)
|.+++..+..+.. ++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+ ..+++|+.|++++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 7777555555555 777777777777766666666667777777777777765444444 446666666666666665
Q ss_pred ccchhcCCCCC--CCEeecccccCc
Q 036674 289 NISEALGIYPN--LNYIDLSRNNFY 311 (339)
Q Consensus 289 ~~~~~l~~~~~--L~~L~L~~n~l~ 311 (339)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 54455555554 356666666654
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=3.3e-21 Score=188.11 Aligned_cols=260 Identities=19% Similarity=0.167 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHHHhcccCCCCcCCCcccCCCCCCCCCCCCcccceEeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCE
Q 036674 32 SNEEADALLKWKASLQIHNRSLLSSWIKDTTNVSSKTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAY 111 (339)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~ 111 (339)
...+.+++.++........+.....|. .+ ....+.|.+..+.. ++++.+++..+.+.... ..+.....|+.
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~--~~~l~~l~Ls~ 200 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPT--GD----STPSGTATNSAVST-PLTPKIELFANGKDEAN--QALLQHKKLSQ 200 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCc--CC----CCccccCCCceecC-CccceEEeeCCCCCcch--hhHhhcCccCc
Confidence 445667888888777555555556662 21 33456787777754 67899999888876532 22222222333
Q ss_pred -----EeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEe
Q 036674 112 -----LDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186 (339)
Q Consensus 112 -----L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 186 (339)
+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|++++|.++ .+|..|..+++|++|+|
T Consensus 201 ~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 201 YSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred ccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence 233334443 45777889999999999999998 78888889999999999999998 88989999999999999
Q ss_pred ecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCc-cceeeccccccCC
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGA-LQNFTVAENHFQG 264 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~ 264 (339)
++|.++ .+|..+..+++|++|++++|.++ .+|..+.. ++|++|+|++|.+++.+|..+..... +..+++++|.+++
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 999998 77999999999999999999987 77777777 89999999999999887777655422 2347788898887
Q ss_pred CchHhhhcCCCCcEEEcccc--------ccccccchhcCCCCCCCEeecccccCc
Q 036674 265 TIPKSLRNCTSLIRVRVNGN--------NLTGNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
.+|.. |+.|+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 356 ~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 356 PLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCC-----------------------------------------------CCC
T ss_pred cCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 77753 445566655 333333333444555566666677664
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2.4e-19 Score=150.89 Aligned_cols=158 Identities=25% Similarity=0.301 Sum_probs=117.7
Q ss_pred CCCCCcccceEeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCc
Q 036674 67 KTSPCAWYGISCNDVGRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGN 146 (339)
Q Consensus 67 ~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 146 (339)
+...|.|.++.|.. ++++ .+ +..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+...
T Consensus 15 ~~~~Cs~~~v~c~~-----------~~l~-~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 15 SQCSCSGTTVDCRS-----------KRHA-SV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp TTCEEETTEEECTT-----------SCCS-SC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCEEeCCEeEccC-----------CCcC-cc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence 67789999999963 2222 22 2222 37899999999999887788899999999999999999744
Q ss_pred CchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-
Q 036674 147 IPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN- 225 (339)
Q Consensus 147 ~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~- 225 (339)
.+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 4456788899999999999888666667788888888888888887 66777777777777777777776444444444
Q ss_pred CCCcEEeCCCCCCCC
Q 036674 226 PMLTRLDLDFNHFTS 240 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~ 240 (339)
++|+.|++++|.+..
T Consensus 159 ~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCCEEECTTSCBCT
T ss_pred CCCCEEEeeCCCccC
Confidence 666666666666554
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3.1e-19 Score=150.20 Aligned_cols=155 Identities=23% Similarity=0.234 Sum_probs=119.1
Q ss_pred CCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCC
Q 036674 156 HLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLD 234 (339)
Q Consensus 156 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~ 234 (339)
.-+.++.+++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+.. ++|++|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3567888888776 6665443 78888899888888777888888888888888888887544455555 888888888
Q ss_pred CCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccC
Q 036674 235 FNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEI 314 (339)
Q Consensus 235 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 314 (339)
+|++++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++....
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88888766666777888888888888887 66677778888888888888888666667777888888888888876443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.8e-19 Score=148.67 Aligned_cols=153 Identities=15% Similarity=0.200 Sum_probs=137.3
Q ss_pred CeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccc
Q 036674 134 SDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCN 213 (339)
Q Consensus 134 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 213 (339)
+.++++++.+. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67899999988 7777654 78999999999999777778999999999999999999888999999999999999999
Q ss_pred cCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccc
Q 036674 214 NLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 214 ~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 289 (339)
.++...+..+.. ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 999555555565 9999999999999998889999999999999999999988888899999999999999998753
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=3.3e-19 Score=160.39 Aligned_cols=176 Identities=23% Similarity=0.225 Sum_probs=142.0
Q ss_pred EEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCC-CCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeec
Q 036674 86 NISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQIS-NLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDT 164 (339)
Q Consensus 86 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 164 (339)
.+++++++++.. +..+ .+.++.|+|++|.+++..+..+. ++++|++|+|++|.+.+..+..|..+++|++|++++
T Consensus 22 ~l~c~~~~l~~i--P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPNV--PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSSC--CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCcc--CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666642 2222 34689999999999877777777 999999999999999966667899999999999999
Q ss_pred cCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCC---CC-CCCcEEeCCCCCCCC
Q 036674 165 NQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSL---DN-PMLTRLDLDFNHFTS 240 (339)
Q Consensus 165 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~-~~L~~L~l~~n~l~~ 240 (339)
|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ .. ++|+.|++++|+++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987777788999999999999999998778889999999999999999985333333 23 889999999999988
Q ss_pred CCchhhcCCCc--cceeeccccccCCC
Q 036674 241 YLPHNVCRGGA--LQNFTVAENHFQGT 265 (339)
Q Consensus 241 ~~~~~~~~~~~--L~~L~l~~n~l~~~ 265 (339)
..+..+..++. ++.|++++|++...
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cCHHHhhhccHhhcceEEecCCCccCC
Confidence 66677777776 47889999888743
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.5e-19 Score=148.46 Aligned_cols=154 Identities=15% Similarity=0.274 Sum_probs=94.4
Q ss_pred cCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEE
Q 036674 152 GLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRL 231 (339)
Q Consensus 152 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 231 (339)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~------------- 103 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSD------------- 103 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGG-------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcc-------------
Confidence 45677777777777776 455 5677777777777777554 223455556666666665555543
Q ss_pred eCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccc-cccccchhcCCCCCCCEeecccccC
Q 036674 232 DLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNN-LTGNISEALGIYPNLNYIDLSRNNF 310 (339)
Q Consensus 232 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~n~l 310 (339)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++
T Consensus 104 ----------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 104 ----------KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp ----------GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred ----------cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence 34444555566666666666665556666666666666666665 44 333 456667777777777777
Q ss_pred cccCCccccCCCCCCeEEcccCcCcc
Q 036674 311 YGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 311 ~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
++ ++ .+..+++|+.|++++|++.+
T Consensus 172 ~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 172 HD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CC-CT-TGGGCSSCCEEEECBC----
T ss_pred cC-hH-HhccCCCCCEEEeeCcccCC
Confidence 63 33 46667777777777777654
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=5.8e-19 Score=147.56 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=135.4
Q ss_pred CeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCC-ccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeeccc
Q 036674 134 SDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIP-PEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFC 212 (339)
Q Consensus 134 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 212 (339)
+.+++++|.+. .+|..+ ...+++|++++|.+++..+ ..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999998 677765 3567899999999986644 4588999999999999999977777899999999999999
Q ss_pred ccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccc
Q 036674 213 NNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNIS 291 (339)
Q Consensus 213 n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 291 (339)
|.+++..+..+.. ++|++|++++|++++..+..+..+++|+.|++++|++++..|..|..+++|++|++++|.+....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999777766766 999999999999999888899999999999999999998889999999999999999999886543
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=4.2e-19 Score=145.88 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=109.3
Q ss_pred CCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCc
Q 036674 127 ISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQ 206 (339)
Q Consensus 127 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 206 (339)
..++++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 367889999999999998 666 7889999999999999765 334789999999999999999877777888888877
Q ss_pred eeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccccc
Q 036674 207 ELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNL 286 (339)
Q Consensus 207 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 286 (339)
+|++++|.+++. .+..+..+++|++|++++|...+.+| .+..+++|++|++++|.+
T Consensus 116 ~L~Ls~n~i~~~-----------------------~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 116 LLDISHSAHDDS-----------------------ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EEECCSSBCBGG-----------------------GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC
T ss_pred EEEecCCccCcH-----------------------hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC
Confidence 777777776643 34444455555555555555222333 355666666666666666
Q ss_pred ccccchhcCCCCCCCEeecccccCc
Q 036674 287 TGNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 287 ~~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
++. + .+..+++|++|++++|++.
T Consensus 172 ~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCC-T-TGGGCSSCCEEEECBC---
T ss_pred cCh-H-HhccCCCCCEEEeeCcccC
Confidence 542 2 4556666666666666654
No 112
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=5e-21 Score=183.33 Aligned_cols=234 Identities=13% Similarity=0.050 Sum_probs=158.7
Q ss_pred CCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCc-hhhcCCCCCcEEEeeccCCCCCCCccccCCCCC
Q 036674 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIP-PEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSL 181 (339)
Q Consensus 103 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 181 (339)
+..+++|+.++++++.. ..+|..+..+++|++|++++|.+.+... ..+..+++|++|+++++...+.++..+..+++|
T Consensus 266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 34444555555554322 2455566677788888888877653322 335677888888887432222233334567888
Q ss_pred cEEEeec-----------CcCCCCCC-CCCCCCCCCceeecccccCcccCCCCCCC--CCCcEEeCC----CCCCCCC--
Q 036674 182 VELFLFF-----------NHLSGSVP-PSLGNLTNLQELILFCNNLSGSIPPSLDN--PMLTRLDLD----FNHFTSY-- 241 (339)
Q Consensus 182 ~~L~l~~-----------n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~L~~L~l~----~n~l~~~-- 241 (339)
++|++++ +.+++... .....+++|++|+++.+.+++..+..+.. ++|++|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 8888883 34432211 12345788999999888887655544433 789999996 5667663
Q ss_pred ---CchhhcCCCccceeeccccc--cCCCchHhh-hcCCCCcEEEccccccccc-cchhcCCCCCCCEeecccccCccc-
Q 036674 242 ---LPHNVCRGGALQNFTVAENH--FQGTIPKSL-RNCTSLIRVRVNGNNLTGN-ISEALGIYPNLNYIDLSRNNFYGE- 313 (339)
Q Consensus 242 ---~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~-~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~- 313 (339)
++..+.++++|+.|++++|. +++..+..+ ..+++|++|++++|++++. ++..+..+++|++|++++|.+++.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 34446678999999997543 565555444 4489999999999999873 455668899999999999998754
Q ss_pred CCccccCCCCCCeEEcccCcCccc
Q 036674 314 ISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 314 ~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
++.....+++|+.|++++|++++.
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhcCccCeeECcCCcCCHH
Confidence 444556789999999999998864
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=2.6e-19 Score=153.86 Aligned_cols=170 Identities=17% Similarity=0.224 Sum_probs=105.0
Q ss_pred CCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEE
Q 036674 105 SFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVEL 184 (339)
Q Consensus 105 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 184 (339)
.+.++..++++++.+++ ++ .+.++++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEE
Confidence 34455666677776653 22 3566777777777777776 444 566777777777777777643 33 6777777777
Q ss_pred EeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccC
Q 036674 185 FLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQ 263 (339)
Q Consensus 185 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 263 (339)
++++|.+.+ ++. +.. ++|++|++++|.+++ ++. +.. ++|++|++++|++++. + .+..+++|+.|++++|.++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TDS-LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SGG-GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Chh-hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777777764 332 222 666777777766663 222 333 6666666666666653 2 4556666666666666666
Q ss_pred CCchHhhhcCCCCcEEEccccccccc
Q 036674 264 GTIPKSLRNCTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 264 ~~~~~~~~~~~~L~~L~l~~n~l~~~ 289 (339)
+. ..+..+++|+.|++++|.+++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 44 4455666666666666666543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=2.8e-22 Score=190.09 Aligned_cols=194 Identities=17% Similarity=0.175 Sum_probs=101.3
Q ss_pred CCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccC-------------CCCCCCccccCCCCCcEEE-eecCcCCC
Q 036674 128 SNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQ-------------LDGSIPPEVGQLSSLVELF-LFFNHLSG 193 (339)
Q Consensus 128 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-------------~~~~~p~~~~~l~~L~~L~-l~~n~~~~ 193 (339)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 44556666666666665 556666666666666654442 3334455556666666665 33332210
Q ss_pred CCCC------CCC--CCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCC
Q 036674 194 SVPP------SLG--NLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQG 264 (339)
Q Consensus 194 ~~~~------~l~--~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 264 (339)
++. .+. ....|+.|++++|.+++ +|. +.. ++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 000 000 00135556666665553 343 333 55666666666655 345555666666666666666654
Q ss_pred CchHhhhcCCCCcEEEcccccccccc-chhcCCCCCCCEeecccccCcccCCcc---ccCCCCCCeEE
Q 036674 265 TIPKSLRNCTSLIRVRVNGNNLTGNI-SEALGIYPNLNYIDLSRNNFYGEISSN---LGEYPKLGTLN 328 (339)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~ 328 (339)
+| .+..+++|++|++++|++++.. |..++.+++|++|+|++|++++.++.. +..+|+|+.|+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 34 4555666666666666665544 555556666666666666665433321 12255555554
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=6e-21 Score=182.75 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=79.9
Q ss_pred CCCcEEeCCCCCCCCCCchhhcC-CCccceeecc----ccccCCC-----chHhhhcCCCCcEEEccccc--cccccchh
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCR-GGALQNFTVA----ENHFQGT-----IPKSLRNCTSLIRVRVNGNN--LTGNISEA 293 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~l~~n~--l~~~~~~~ 293 (339)
++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|++|++++|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 67777777767776655555554 7788888886 5566653 44446678888888887543 56555444
Q ss_pred cC-CCCCCCEeecccccCcc-cCCccccCCCCCCeEEcccCcCcc
Q 036674 294 LG-IYPNLNYIDLSRNNFYG-EISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 294 l~-~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
+. .+++|++|++++|++++ .++..+..+++|+.|++++|++++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 43 47899999999999886 445566789999999999999874
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=3.1e-22 Score=189.83 Aligned_cols=196 Identities=20% Similarity=0.221 Sum_probs=162.5
Q ss_pred CCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCC-------------CcCcCchhhcCCCCCcEEE-eeccCCC
Q 036674 103 FSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQ-------------FSGNIPPEVGLMSHLKFLY-IDTNQLD 168 (339)
Q Consensus 103 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-l~~n~~~ 168 (339)
+..+++|+.|++++|.+. .+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 467889999999999997 889999999999999997775 5556777888888999888 5554332
Q ss_pred CCCCc------cccC--CCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCC
Q 036674 169 GSIPP------EVGQ--LSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFT 239 (339)
Q Consensus 169 ~~~p~------~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~ 239 (339)
.++. .+.. ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.. ++|+.|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1111 1111 1359999999999985 676 999999999999999999 78888877 99999999999999
Q ss_pred CCCchhhcCCCccceeeccccccCCCc-hHhhhcCCCCcEEEccccccccccch---hcCCCCCCCEeec
Q 036674 240 SYLPHNVCRGGALQNFTVAENHFQGTI-PKSLRNCTSLIRVRVNGNNLTGNISE---ALGIYPNLNYIDL 305 (339)
Q Consensus 240 ~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~L~L 305 (339)
+ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.++. .+..+++|+.|++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8 66 8999999999999999999876 99999999999999999999976553 2344889999874
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=3.8e-19 Score=152.82 Aligned_cols=171 Identities=23% Similarity=0.302 Sum_probs=147.3
Q ss_pred CCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCcee
Q 036674 129 NLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQEL 208 (339)
Q Consensus 129 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 208 (339)
++.++..++++++.+. .++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 5677888999999988 444 6788999999999999998 556 68899999999999999986544 8999999999
Q ss_pred ecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccccccc
Q 036674 209 ILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTG 288 (339)
Q Consensus 209 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 288 (339)
++++|.+++ ++.... ++|++|++++|++++. ..+..+++|+.|++++|++++. + .+..+++|++|++++|++++
T Consensus 91 ~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSC-CTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCC-cCcccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 999999985 444433 8999999999999874 3588999999999999999865 4 68899999999999999997
Q ss_pred ccchhcCCCCCCCEeecccccCccc
Q 036674 289 NISEALGIYPNLNYIDLSRNNFYGE 313 (339)
Q Consensus 289 ~~~~~l~~~~~L~~L~L~~n~l~~~ 313 (339)
. ..+..+++|++|++++|++++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 6 6688899999999999999854
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=4.1e-18 Score=139.32 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=85.9
Q ss_pred ceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCch-hhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccc
Q 036674 206 QELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPH-NVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284 (339)
Q Consensus 206 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (339)
+.++++++.++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcC-cCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 45555555554 4444332 2566666666666654443 3666677777777777777666666777777777777777
Q ss_pred ccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcccC
Q 036674 285 NLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGGI 338 (339)
Q Consensus 285 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~i 338 (339)
++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 777666666667777777777777777666666777777777777777776543
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=7.6e-19 Score=171.42 Aligned_cols=217 Identities=19% Similarity=0.144 Sum_probs=122.8
Q ss_pred CCCCEEeCCCCcCCCCCCccCCCCCccCeee-----ccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCC
Q 036674 107 PHLAYLDLSHNELFGTIPPQISNLTNLSDLY-----LEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSL 181 (339)
Q Consensus 107 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~-----L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 181 (339)
+.++.|++.++.+.. .+..+.....|+.+. +..|.+. ..+..+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 568889998888764 343333333333333 3334444 45778889999999999999998 788888899999
Q ss_pred cEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeecccc
Q 036674 182 VELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAEN 260 (339)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 260 (339)
++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+.. ++|++|+|++|.++. +|..|..+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCC
Confidence 99999999999 88999999999999999999999 77888877 999999999999974 7878999999999999999
Q ss_pred ccCCCchHhhhcCCC-CcEEEccccccccccchhcCCCCCCCEeecccc--------cCcccCCccccCCCCCCeEEccc
Q 036674 261 HFQGTIPKSLRNCTS-LIRVRVNGNNLTGNISEALGIYPNLNYIDLSRN--------NFYGEISSNLGEYPKLGTLNVSM 331 (339)
Q Consensus 261 ~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~l~~ 331 (339)
.+++.+|..+..... +..+++++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....+++
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 999988888755422 23478999999877665 4566667766 33333444455666777788888
Q ss_pred CcCc
Q 036674 332 NNIT 335 (339)
Q Consensus 332 n~lt 335 (339)
|.+.
T Consensus 401 Nil~ 404 (727)
T 4b8c_D 401 NTLC 404 (727)
T ss_dssp -CCC
T ss_pred cccc
Confidence 8775
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=4.1e-17 Score=130.35 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=67.7
Q ss_pred CCCcEEEeecCcCC-CCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeec
Q 036674 179 SSLVELFLFFNHLS-GSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTV 257 (339)
Q Consensus 179 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 257 (339)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~L 78 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-------------------------SNLPKLPKLKKLEL 78 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-------------------------SSCCCCSSCCEEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-------------------------hhhccCCCCCEEEC
Confidence 55666666666655 44555555555566666555555432 33444455555555
Q ss_pred cccccCCCchHhhhcCCCCcEEEcccccccccc-chhcCCCCCCCEeecccccCcccCC---ccccCCCCCCeEEcccCc
Q 036674 258 AENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNI-SEALGIYPNLNYIDLSRNNFYGEIS---SNLGEYPKLGTLNVSMNN 333 (339)
Q Consensus 258 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~ 333 (339)
++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.
T Consensus 79 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 555555444444444555555555555555322 1344555555555555555553332 244555555555555554
Q ss_pred C
Q 036674 334 I 334 (339)
Q Consensus 334 l 334 (339)
+
T Consensus 159 ~ 159 (168)
T 2ell_A 159 D 159 (168)
T ss_dssp S
T ss_pred h
Confidence 4
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=6.2e-17 Score=130.45 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=74.5
Q ss_pred ceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccc
Q 036674 206 QELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNN 285 (339)
Q Consensus 206 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 285 (339)
+.++++++.++ .+|..+. +++++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 10 ~~l~~~~~~l~-~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCc-cCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34444444444 2332221 455666666666655444455556666666666666665555555666666666666666
Q ss_pred cccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCccc
Q 036674 286 LTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITGG 337 (339)
Q Consensus 286 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~~ 337 (339)
+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 6655555556666666666666666644444455666666666666666554
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=5.3e-17 Score=127.02 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=94.3
Q ss_pred CCCceeecccccCc-ccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEE
Q 036674 203 TNLQELILFCNNLS-GSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVR 280 (339)
Q Consensus 203 ~~L~~L~l~~n~l~-~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 280 (339)
++|+.|++++|.++ +.+|..+.. ++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666666 455555544 6777777777777664 5667778888888888888876777777788888888
Q ss_pred ccccccccc-cchhcCCCCCCCEeecccccCcccCC---ccccCCCCCCeEEccc
Q 036674 281 VNGNNLTGN-ISEALGIYPNLNYIDLSRNNFYGEIS---SNLGEYPKLGTLNVSM 331 (339)
Q Consensus 281 l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~ 331 (339)
+++|.+++. .+..++.+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888764 34667788888888888888886554 4677888888888764
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=1e-16 Score=128.00 Aligned_cols=134 Identities=18% Similarity=0.194 Sum_probs=93.3
Q ss_pred CCCCCcEEEeeccCCC-CCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEE
Q 036674 153 LMSHLKFLYIDTNQLD-GSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRL 231 (339)
Q Consensus 153 ~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 231 (339)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~----------- 88 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD----------- 88 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-----------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-----------
Confidence 3588999999999997 67888889999999999999999865 677888888888888887764333
Q ss_pred eCCCCCCCCCCchhhcCCCccceeeccccccCCCc-hHhhhcCCCCcEEEccccccccccc---hhcCCCCCCCEeeccc
Q 036674 232 DLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTI-PKSLRNCTSLIRVRVNGNNLTGNIS---EALGIYPNLNYIDLSR 307 (339)
Q Consensus 232 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~L~~ 307 (339)
..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 89 ------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 89 ------------MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ------------HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ------------HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 33334455555555555554321 1445566666666666666664444 3556666777777776
Q ss_pred ccCc
Q 036674 308 NNFY 311 (339)
Q Consensus 308 n~l~ 311 (339)
|.+.
T Consensus 157 n~~~ 160 (168)
T 2ell_A 157 REDQ 160 (168)
T ss_dssp TTSC
T ss_pred CChh
Confidence 6665
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=130.00 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=86.8
Q ss_pred ceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccc
Q 036674 206 QELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNN 285 (339)
Q Consensus 206 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 285 (339)
+.++++++.++ .+|..+. +++++|++++|.++. +|..+..+++|+.|++++|.+++..+..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 34555655555 4443332 466777777777764 55667777777777777777776666667777777777777777
Q ss_pred cccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcCcc
Q 036674 286 LTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 286 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~lt~ 336 (339)
+++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 776666667777777777777777775555566777777777777777654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=4.6e-16 Score=127.05 Aligned_cols=107 Identities=28% Similarity=0.284 Sum_probs=49.6
Q ss_pred CCCEEeCCCCcCCCCCCc-cCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEe
Q 036674 108 HLAYLDLSHNELFGTIPP-QISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFL 186 (339)
Q Consensus 108 ~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 186 (339)
++++|++++|.+.+..+. .+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555433332 2445555555555555555444444445555555555555544444444444444444444
Q ss_pred ecCcCCCCCCCCCCCCCCCceeeccccc
Q 036674 187 FFNHLSGSVPPSLGNLTNLQELILFCNN 214 (339)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 214 (339)
++|.+++..|..+..+++|++|++++|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 4444444334444444444444443333
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2e-19 Score=172.13 Aligned_cols=206 Identities=13% Similarity=0.116 Sum_probs=124.7
Q ss_pred CCCccCeeeccCCCCcCcC-chhhcCCCCCcEEEeeccCCCCC-CCccccCCCCCcEEEeecC---------cCCCCCCC
Q 036674 129 NLTNLSDLYLEGDQFSGNI-PPEVGLMSHLKFLYIDTNQLDGS-IPPEVGQLSSLVELFLFFN---------HLSGSVPP 197 (339)
Q Consensus 129 ~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n---------~~~~~~~~ 197 (339)
.+++|++|++++|.+.+.. +..+..+++|++|++++| ++.. ++.....+++|++|++.++ .+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 3455666666666544221 122345566666666655 2211 1112224666676666432 22211111
Q ss_pred CC-CCCCCCceeecccccCcccCCCCCCC--CCCcEEeCC--C----CCCCCC-----CchhhcCCCccceeeccccccC
Q 036674 198 SL-GNLTNLQELILFCNNLSGSIPPSLDN--PMLTRLDLD--F----NHFTSY-----LPHNVCRGGALQNFTVAENHFQ 263 (339)
Q Consensus 198 ~l-~~l~~L~~L~l~~n~l~~~~~~~~~~--~~L~~L~l~--~----n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~ 263 (339)
.+ ..+++|++|.+..+.+++.....+.. ++|++|+++ + +.+++. ++..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 11 23677777777777776544433332 788888888 3 445431 222356678888898877 566
Q ss_pred CCchHhhhc-CCCCcEEEccccccccccchhc-CCCCCCCEeecccccCcccCCc-cccCCCCCCeEEcccCcCcc
Q 036674 264 GTIPKSLRN-CTSLIRVRVNGNNLTGNISEAL-GIYPNLNYIDLSRNNFYGEISS-NLGEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 264 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~lt~ 336 (339)
+..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 555555544 8889999999999877655554 5688999999999998654333 44568899999999998753
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3.8e-17 Score=145.03 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=88.5
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCc-EEEccccccccccchhcCCCCCCCEee
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLI-RVRVNGNNLTGNISEALGIYPNLNYID 304 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~ 304 (339)
++|+++++++|+++...+..|.++++|+.+++.+| ++...+.+|.++++|+ .+++.+ .++...+.+|.++++|++++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 68999999999888877788999999999999987 7666778899999999 999988 77767778899999999999
Q ss_pred cccccCcccCCccccCCCCCCeEEc
Q 036674 305 LSRNNFYGEISSNLGEYPKLGTLNV 329 (339)
Q Consensus 305 L~~n~l~~~~~~~l~~l~~L~~L~l 329 (339)
+++|.++...+..|.++++|+.++.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 9999998777778999999998874
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=2e-16 Score=123.71 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=86.8
Q ss_pred CCCcEEEeecCcCC-CCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceee
Q 036674 179 SSLVELFLFFNHLS-GSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFT 256 (339)
Q Consensus 179 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 256 (339)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+.. ++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 34455555555566666666555533 33333 6777777777777776777777788888888
Q ss_pred ccccccCCC-chHhhhcCCCCcEEEccccccccccc---hhcCCCCCCCEeeccc
Q 036674 257 VAENHFQGT-IPKSLRNCTSLIRVRVNGNNLTGNIS---EALGIYPNLNYIDLSR 307 (339)
Q Consensus 257 l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~L~~ 307 (339)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..++.+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888753 34678888888888888888887655 5677888888888763
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=4.3e-19 Score=169.87 Aligned_cols=255 Identities=14% Similarity=0.117 Sum_probs=145.2
Q ss_pred CCCEEEEEcCCCCCcccc---CCCCCCCCCCCCEEeCCCCc--CCCC-CCccCCCCCccCeeeccCCCCcCcCchhhcCC
Q 036674 81 VGRVVNISLPAKGLKGKL---HDFSFSSFPHLAYLDLSHNE--LFGT-IPPQISNLTNLSDLYLEGDQFSGNIPPEVGLM 154 (339)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~--~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 154 (339)
..+++.|++++|.+++.. .......+++|++|++++|. +... +...+.++++|++|++++|...+.++..+..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 367999999998865432 02233477899999999886 2211 22223457888888888873222355555556
Q ss_pred CCCcEEEeeccC--------------------------CCC----CCCccccCCCCCcEEEeecCcCCCCCC-CCCCCCC
Q 036674 155 SHLKFLYIDTNQ--------------------------LDG----SIPPEVGQLSSLVELFLFFNHLSGSVP-PSLGNLT 203 (339)
Q Consensus 155 ~~L~~L~l~~n~--------------------------~~~----~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~ 203 (339)
++|++|+++.+. +.. .++..+..+++|++|++++|.+.+... ..+..++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 666666543331 111 122222345667777776666442211 1133455
Q ss_pred CCceeecccc---------------------------------cCcccCCCCCC--CCCCcEEeCCCCCCCCCCchhhc-
Q 036674 204 NLQELILFCN---------------------------------NLSGSIPPSLD--NPMLTRLDLDFNHFTSYLPHNVC- 247 (339)
Q Consensus 204 ~L~~L~l~~n---------------------------------~l~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~- 247 (339)
+|++|++++| .+++.....+. .++|++|.+..+.+++.....+.
T Consensus 315 ~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~ 394 (594)
T 2p1m_B 315 KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR 394 (594)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH
T ss_pred CcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh
Confidence 5555555554 11111000000 14555555555555443333333
Q ss_pred CCCccceeecc--c----cccCCC-----chHhhhcCCCCcEEEccccccccccchhcCC-CCCCCEeecccccCcccCC
Q 036674 248 RGGALQNFTVA--E----NHFQGT-----IPKSLRNCTSLIRVRVNGNNLTGNISEALGI-YPNLNYIDLSRNNFYGEIS 315 (339)
Q Consensus 248 ~~~~L~~L~l~--~----n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~~~L~~L~L~~n~l~~~~~ 315 (339)
.+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++..+..++. +++|++|++++|.+++..+
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 36777777777 2 344421 223356677778888766 566555555544 7889999999999876544
Q ss_pred ccc-cCCCCCCeEEcccCcCcc
Q 036674 316 SNL-GEYPKLGTLNVSMNNITG 336 (339)
Q Consensus 316 ~~l-~~l~~L~~L~l~~n~lt~ 336 (339)
..+ ..+++|+.|++++|++++
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHHhcCCCcCEEECcCCCCcH
Confidence 444 568999999999998864
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=3.6e-15 Score=121.79 Aligned_cols=106 Identities=25% Similarity=0.253 Sum_probs=50.4
Q ss_pred CCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEee
Q 036674 108 HLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLF 187 (339)
Q Consensus 108 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 187 (339)
+|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555554 444445555555555555555553333444555555555555555544444444444445555554
Q ss_pred cCcCCCCCCCCCCCCCCCceeeccccc
Q 036674 188 FNHLSGSVPPSLGNLTNLQELILFCNN 214 (339)
Q Consensus 188 ~n~~~~~~~~~l~~l~~L~~L~l~~n~ 214 (339)
+|.+....+..+..+++|+.|++++|.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCC
Confidence 444443333334444444444444433
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=9.1e-15 Score=117.66 Aligned_cols=104 Identities=23% Similarity=0.268 Sum_probs=56.3
Q ss_pred CEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecC
Q 036674 110 AYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFN 189 (339)
Q Consensus 110 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 189 (339)
+.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 55666666655 334322 246666666666665433334555666666666666665444444555556666666655
Q ss_pred cCCCCCCCCCCCCCCCceeecccccCc
Q 036674 190 HLSGSVPPSLGNLTNLQELILFCNNLS 216 (339)
Q Consensus 190 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 216 (339)
.+++..+..+..+++|++|++++|.++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccccCHHHhhCCcccCEEECcCCcce
Confidence 555444444445555555555555544
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=2.4e-14 Score=130.05 Aligned_cols=222 Identities=14% Similarity=0.084 Sum_probs=90.8
Q ss_pred CCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCC
Q 036674 100 DFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLS 179 (339)
Q Consensus 100 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 179 (339)
..+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+...-+..|.++++|+.+++..|.++......|. ..
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 3344443 4555555443 332223334442 355555543 33322233444555555555555444422222332 34
Q ss_pred CCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccc
Q 036674 180 SLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAE 259 (339)
Q Consensus 180 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 259 (339)
+|+.+.+..+ +......+|.++++|+.+.+..+ ++.....++...+|+.+.+ .+.++......|.++++|+.+++.+
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC
Confidence 5555555422 33233334444455555554432 2222222233344444444 2223333334444444444444444
Q ss_pred cccC-----CCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccC
Q 036674 260 NHFQ-----GTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMN 332 (339)
Q Consensus 260 n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 332 (339)
+.+. ...+.+|..+++|+.+.+.+ .++.....+|.++++|+.+++..+ ++..-..+|.++ +|+.+++.+|
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 3332 12233344444444444442 233333334444444444444322 332223344444 4444444444
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=8.5e-16 Score=123.65 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=76.5
Q ss_pred cccCCCCCcEEEeecCcCCCCCCCCCCCCC-CCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCc
Q 036674 174 EVGQLSSLVELFLFFNHLSGSVPPSLGNLT-NLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGA 251 (339)
Q Consensus 174 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~ 251 (339)
.+.++.+|++|++++|.+.. ++. +..+. +|++|++++|.+++. ..+.. ++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35566777777777777763 343 33333 677777777766643 23333 66666666666666543344455666
Q ss_pred cceeeccccccCCCchH--hhhcCCCCcEEEccccccccccch----hcCCCCCCCEeecccccCc
Q 036674 252 LQNFTVAENHFQGTIPK--SLRNCTSLIRVRVNGNNLTGNISE----ALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 252 L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~L~~L~L~~n~l~ 311 (339)
|++|++++|.++ .+|. .+..+++|++|++++|.++.. |. .+..+++|++|++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666666664 3333 455666666666666666532 33 2555666666666666543
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=4.4e-14 Score=128.27 Aligned_cols=240 Identities=13% Similarity=0.112 Sum_probs=186.9
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEe
Q 036674 83 RVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYI 162 (339)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 162 (339)
+++.+.++.+ ++ .++..+|.++ +|+.+.+.. .+...-..+|.+|++|+.+++.+|.+. .++.....+.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEe
Confidence 4666666654 43 3446678775 799999986 566556678999999999999999998 55554434799999999
Q ss_pred eccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCC--
Q 036674 163 DTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFT-- 239 (339)
Q Consensus 163 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~-- 239 (339)
..+ +......+|.++++|+.+++..+ +......+|.+ .+|+.+.+. +.++......|.. ++|+.+++.++.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 854 66566778999999999999875 44445566776 789999994 4566455666666 89999999888765
Q ss_pred ---CCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCc
Q 036674 240 ---SYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISS 316 (339)
Q Consensus 240 ---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 316 (339)
......|.++++|+.+.+.+ .++.....+|.++++|+.+.+..+ ++.....+|.++ +|+.+++.+|........
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 34567888999999999995 577667788999999999999665 666667889999 999999999998866667
Q ss_pred cccCCC-CCCeEEcccCcC
Q 036674 317 NLGEYP-KLGTLNVSMNNI 334 (339)
Q Consensus 317 ~l~~l~-~L~~L~l~~n~l 334 (339)
.|.+++ +++.|++-.+.+
T Consensus 364 ~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCCSCTTCCEEEECGGGH
T ss_pred cccCCCCCccEEEeCHHHH
Confidence 788885 788998877643
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=1.3e-17 Score=137.11 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=80.2
Q ss_pred hcCCCCCcEEEeeccCCCCCCCc------cccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCC
Q 036674 151 VGLMSHLKFLYIDTNQLDGSIPP------EVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLD 224 (339)
Q Consensus 151 l~~l~~L~~L~l~~n~~~~~~p~------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 224 (339)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34456666666666666666555 77778888888888887774 55 6777777777777777776 4444333
Q ss_pred C-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCch-HhhhcCCCCcEEEccccccccc
Q 036674 225 N-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIP-KSLRNCTSLIRVRVNGNNLTGN 289 (339)
Q Consensus 225 ~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~ 289 (339)
. ++|++|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 3 555566655555554 22 34455555555555555553221 2445555555555555555443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.6e-15 Score=134.45 Aligned_cols=221 Identities=14% Similarity=0.083 Sum_probs=142.3
Q ss_pred CCEEEEEcCCCCCcc-------------------ccCCCCCCC--------CCCCCEEeCCCCcCCCCCCccCCCCCccC
Q 036674 82 GRVVNISLPAKGLKG-------------------KLHDFSFSS--------FPHLAYLDLSHNELFGTIPPQISNLTNLS 134 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~-------------------~~~~~~~~~--------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 134 (339)
.+++.|+|++|.+.. .++...|.+ +++|+.+++.+ .++...+.+|.+|++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 567777777776651 222344555 66666666665 55434444566666666
Q ss_pred eeeccCCCCcCcCchhhcCCCCCcEEEeecc----CCCCCCCccccCCCCCc-EEEeecCcCC-------CCCCCC----
Q 036674 135 DLYLEGDQFSGNIPPEVGLMSHLKFLYIDTN----QLDGSIPPEVGQLSSLV-ELFLFFNHLS-------GSVPPS---- 198 (339)
Q Consensus 135 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n----~~~~~~p~~~~~l~~L~-~L~l~~n~~~-------~~~~~~---- 198 (339)
.+++.+|.+....+..|..+.++.++....+ .........|.++..|+ .+.+.....- ...+..
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 6666666555344445555554444443331 11111222333444444 2222211000 000000
Q ss_pred -------------C-CCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccc-eeecccccc
Q 036674 199 -------------L-GNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQ-NFTVAENHF 262 (339)
Q Consensus 199 -------------l-~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l 262 (339)
+ ..+++|+.+++++|.++......|.. .+|+++++..| ++...+..|.++++|+ .+++.+ .+
T Consensus 208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 0 12689999999999998655666766 89999999987 7777778899999999 999998 77
Q ss_pred CCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeec
Q 036674 263 QGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDL 305 (339)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 305 (339)
+...+.+|.++++|+++++++|.++...+.+|.++++|+.++.
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7677889999999999999999999888889999999999864
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1e-14 Score=116.58 Aligned_cols=106 Identities=20% Similarity=0.133 Sum_probs=66.9
Q ss_pred CceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccc
Q 036674 205 LQELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284 (339)
Q Consensus 205 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (339)
.+.+++++|.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcC-ccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666666 3444332 56666666666666655666666666666666666666555555666666666666666
Q ss_pred ccccccchhcCCCCCCCEeecccccCcc
Q 036674 285 NLTGNISEALGIYPNLNYIDLSRNNFYG 312 (339)
Q Consensus 285 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 312 (339)
++++..+..+..+++|++|+|++|++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6665555556666666666666666653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=4.7e-17 Score=133.64 Aligned_cols=149 Identities=17% Similarity=0.242 Sum_probs=102.7
Q ss_pred CCCCCccCeeeccCCCCcCcCch------hhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCC
Q 036674 127 ISNLTNLSDLYLEGDQFSGNIPP------EVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLG 200 (339)
Q Consensus 127 ~~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 200 (339)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666666666666665555 77778888888888887774 56 6777788888888888877 5666666
Q ss_pred CCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCc-hhhcCCCccceeeccccccCCCchH----------
Q 036674 201 NLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLP-HNVCRGGALQNFTVAENHFQGTIPK---------- 268 (339)
Q Consensus 201 ~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~---------- 268 (339)
.+++|++|++++|.+++ +| .+.. ++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 66778888888887774 33 2333 778888888888776322 4677778888888888877655443
Q ss_pred hhhcCCCCcEEE
Q 036674 269 SLRNCTSLIRVR 280 (339)
Q Consensus 269 ~~~~~~~L~~L~ 280 (339)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 245556666554
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=1.2e-14 Score=116.81 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=78.0
Q ss_pred hcCCCCCcEEEeeccCCCCCCCccccCC-CCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCC
Q 036674 151 VGLMSHLKFLYIDTNQLDGSIPPEVGQL-SSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PML 228 (339)
Q Consensus 151 l~~l~~L~~L~l~~n~~~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L 228 (339)
+..+.+|++|++++|.++ .+|. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+.. ++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445666667777666666 3343 3333 3667777776666643 45666666777777776666433232233 666
Q ss_pred cEEeCCCCCCCCCCch--hhcCCCccceeeccccccCCCchH----hhhcCCCCcEEEccccccc
Q 036674 229 TRLDLDFNHFTSYLPH--NVCRGGALQNFTVAENHFQGTIPK----SLRNCTSLIRVRVNGNNLT 287 (339)
Q Consensus 229 ~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~ 287 (339)
++|++++|.++. +|. .+..+++|+.|++++|+++. .|. .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777666644 343 56666667777777766653 333 3566666777776666554
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=4.1e-14 Score=113.50 Aligned_cols=105 Identities=21% Similarity=0.152 Sum_probs=74.1
Q ss_pred ceeecccccCcccCCCCCCCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccc
Q 036674 206 QELILFCNNLSGSIPPSLDNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNN 285 (339)
Q Consensus 206 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 285 (339)
+.+++++|.++ .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCC-ccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 56777777775 5555443 677777777777777667777777777777777777776555556777777777777777
Q ss_pred cccccchhcCCCCCCCEeecccccCcc
Q 036674 286 LTGNISEALGIYPNLNYIDLSRNNFYG 312 (339)
Q Consensus 286 l~~~~~~~l~~~~~L~~L~L~~n~l~~ 312 (339)
+++..+..+..+++|++|+|++|++..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 776555556777777777777777663
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=3.6e-13 Score=107.53 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=68.2
Q ss_pred EEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeecc
Q 036674 86 NISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTN 165 (339)
Q Consensus 86 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 165 (339)
.++++++.++. + +..+ .++|++|++++|.+++..|..|.++++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 13 ~l~~s~n~l~~-i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGKSLAS-V-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTSCCSS-C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-c-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 44555565554 2 2222 366777777777777666667777777777777777777444445667777777777777
Q ss_pred CCCCCCCccccCCCCCcEEEeecCcCC
Q 036674 166 QLDGSIPPEVGQLSSLVELFLFFNHLS 192 (339)
Q Consensus 166 ~~~~~~p~~~~~l~~L~~L~l~~n~~~ 192 (339)
.+++..+..|..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 777555555677777777777777665
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=7.7e-13 Score=106.00 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=71.1
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeec
Q 036674 85 VNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDT 164 (339)
Q Consensus 85 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 164 (339)
+.+++++++++. + +..+ .++|++|++++|.+.+..|..|.++++|++|+|++|++.+..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~-i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLAS-V-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSS-C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCc-c-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 456777777643 3 2223 26777888888877766677777777788888887777743333456777777777777
Q ss_pred cCCCCCCCccccCCCCCcEEEeecCcCC
Q 036674 165 NQLDGSIPPEVGQLSSLVELFLFFNHLS 192 (339)
Q Consensus 165 n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 192 (339)
|.+++..+..|..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7777544445777777777777777766
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=2.4e-15 Score=135.33 Aligned_cols=182 Identities=17% Similarity=0.137 Sum_probs=124.3
Q ss_pred CCCCcEEEeeccCCCCCCCcccc-----CCCCCcEEEeecCcCCCCCCCCC-CCCCCCceeecccccCcccCCCCC----
Q 036674 154 MSHLKFLYIDTNQLDGSIPPEVG-----QLSSLVELFLFFNHLSGSVPPSL-GNLTNLQELILFCNNLSGSIPPSL---- 223 (339)
Q Consensus 154 l~~L~~L~l~~n~~~~~~p~~~~-----~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~---- 223 (339)
++.|++|++++|.++......+. ..++|++|++++|.+.......+ ..+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 47899999999998744333332 23799999999998864333333 245688999999998875433332
Q ss_pred -C-CCCCcEEeCCCCCCCCC----CchhhcCCCccceeeccccccCCC----chHhhhcCCCCcEEEcccccccccc---
Q 036674 224 -D-NPMLTRLDLDFNHFTSY----LPHNVCRGGALQNFTVAENHFQGT----IPKSLRNCTSLIRVRVNGNNLTGNI--- 290 (339)
Q Consensus 224 -~-~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~--- 290 (339)
. .+.|++|++++|.++.. ++..+...++|++|++++|.+++. +...+...++|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 1 27799999999988653 344456788899999999988754 3556677889999999999988643
Q ss_pred -chhcCCCCCCCEeecccccCcccCCccccCC---CC--CCeEE--cccCcCc
Q 036674 291 -SEALGIYPNLNYIDLSRNNFYGEISSNLGEY---PK--LGTLN--VSMNNIT 335 (339)
Q Consensus 291 -~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l---~~--L~~L~--l~~n~lt 335 (339)
+..+...++|++|+|++|.+++.-...+..+ .. |+.+. +.+|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3444567889999999999875433333322 21 66666 6666554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=3.9e-15 Score=133.97 Aligned_cols=182 Identities=20% Similarity=0.133 Sum_probs=127.2
Q ss_pred CCccCeeeccCCCCcCcCchhh----c-CCCCCcEEEeeccCCCCCCCccc-cCCCCCcEEEeecCcCCCCCCCCC----
Q 036674 130 LTNLSDLYLEGDQFSGNIPPEV----G-LMSHLKFLYIDTNQLDGSIPPEV-GQLSSLVELFLFFNHLSGSVPPSL---- 199 (339)
Q Consensus 130 l~~L~~L~L~~n~l~~~~p~~l----~-~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~l---- 199 (339)
++.|++|++++|.++......+ . ..++|++|++++|.++......+ ..+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999885333333 2 23799999999998864333222 345789999999999875433333
Q ss_pred -CCCCCCceeecccccCcccC----CCCCCC-CCCcEEeCCCCCCCCCC----chhhcCCCccceeeccccccCCC----
Q 036674 200 -GNLTNLQELILFCNNLSGSI----PPSLDN-PMLTRLDLDFNHFTSYL----PHNVCRGGALQNFTVAENHFQGT---- 265 (339)
Q Consensus 200 -~~l~~L~~L~l~~n~l~~~~----~~~~~~-~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~---- 265 (339)
...++|++|++++|.+++.. +..+.. ++|++|++++|.+++.. ...+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 24678999999999987532 222233 78999999999987532 45667778999999999999854
Q ss_pred chHhhhcCCCCcEEEccccccccccchhcCCC---C--CCCEee--cccccCc
Q 036674 266 IPKSLRNCTSLIRVRVNGNNLTGNISEALGIY---P--NLNYID--LSRNNFY 311 (339)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~---~--~L~~L~--L~~n~l~ 311 (339)
+...+...++|++|++++|.+++.....+... . .|+.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 34556678999999999999987655555332 2 266666 6666664
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=2.3e-12 Score=114.93 Aligned_cols=101 Identities=21% Similarity=0.204 Sum_probs=51.3
Q ss_pred eecccc-cCcccCCCCCCC-CCCcEEeCCC-CCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccc
Q 036674 208 LILFCN-NLSGSIPPSLDN-PMLTRLDLDF-NHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284 (339)
Q Consensus 208 L~l~~n-~l~~~~~~~~~~-~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (339)
++.+++ .++ .+|. +.. ++|++|+|++ |.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 444444 444 3444 433 4555555553 5555544445555555555555555555555555555555555555555
Q ss_pred ccccccchhcCCCCCCCEeecccccCc
Q 036674 285 NLTGNISEALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 285 ~l~~~~~~~l~~~~~L~~L~L~~n~l~ 311 (339)
++++..+..+..++ |++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55544444443333 555555555544
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=5.3e-12 Score=112.57 Aligned_cols=108 Identities=22% Similarity=0.211 Sum_probs=90.4
Q ss_pred CcccceEeCCCCCEEEEEcCCC-CCccccCCCCCCCCCCCCEEeCCC-CcCCCCCCccCCCCCccCeeeccCCCCcCcCc
Q 036674 71 CAWYGISCNDVGRVVNISLPAK-GLKGKLHDFSFSSFPHLAYLDLSH-NELFGTIPPQISNLTNLSDLYLEGDQFSGNIP 148 (339)
Q Consensus 71 c~~~gv~c~~~~~v~~l~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 148 (339)
|.|..+.|. ++ ++++ + |. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+.+..|
T Consensus 8 C~~~~v~~~-----------~~n~l~~-i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 8 HGSSGLRCT-----------RDGALDS-L-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SSSSCEECC-----------SSCCCTT-T-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred ccCCEEEcC-----------CCCCCCc-c-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence 777777664 33 4554 4 44 88999999999996 99987777889999999999999999998788
Q ss_pred hhhcCCCCCcEEEeeccCCCCCCCccccCCCCCcEEEeecCcCCC
Q 036674 149 PEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSLVELFLFFNHLSG 193 (339)
Q Consensus 149 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 193 (339)
..|.++++|++|++++|.+++..+..+..++ |+.|++.+|.+..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8899999999999999999965555666555 9999999999873
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=3.2e-11 Score=107.68 Aligned_cols=198 Identities=16% Similarity=0.183 Sum_probs=109.4
Q ss_pred CccCeeeccCCCCcC-c-------CchhhcCCCCCcEEEeeccCCC---------CCCCccccCCCCCcEEEeecCcCCC
Q 036674 131 TNLSDLYLEGDQFSG-N-------IPPEVGLMSHLKFLYIDTNQLD---------GSIPPEVGQLSSLVELFLFFNHLSG 193 (339)
Q Consensus 131 ~~L~~L~L~~n~l~~-~-------~p~~l~~l~~L~~L~l~~n~~~---------~~~p~~~~~l~~L~~L~l~~n~~~~ 193 (339)
..++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456777777655432 1 1233556789999988664321 123344567788888888876311
Q ss_pred CCCCCCCCCCCCceeecccccCcccCCCCCC---CCCCcEEeCCC--CCCCCC-----Cchhh--cCCCccceeeccccc
Q 036674 194 SVPPSLGNLTNLQELILFCNNLSGSIPPSLD---NPMLTRLDLDF--NHFTSY-----LPHNV--CRGGALQNFTVAENH 261 (339)
Q Consensus 194 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~~L~~L~l~~--n~l~~~-----~~~~~--~~~~~L~~L~l~~n~ 261 (339)
.++. + .+++|++|++..+.+.......+. .++|++|+|+. +...+. +...+ ..+++|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2232 3 267788888877766533222221 26777777642 111111 11122 235677777777777
Q ss_pred cCCCchHhhh---cCCCCcEEEccccccccccc----hhcCCCCCCCEeecccccCcccCCccccC-CCCCCeEEcccCc
Q 036674 262 FQGTIPKSLR---NCTSLIRVRVNGNNLTGNIS----EALGIYPNLNYIDLSRNNFYGEISSNLGE-YPKLGTLNVSMNN 333 (339)
Q Consensus 262 l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~ 333 (339)
+.+..+..+. .+++|++|+++.|.+++..+ ..+..+++|++|++++|.++......+.. + ...+++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 6644333332 35677777777777765322 22234567777777777766433332322 2 2446666554
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.09 E-value=2.5e-09 Score=96.91 Aligned_cols=219 Identities=10% Similarity=0.029 Sum_probs=102.0
Q ss_pred CCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEEeeccCCCCCCCccccCCCCC
Q 036674 102 SFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLYIDTNQLDGSIPPEVGQLSSL 181 (339)
Q Consensus 102 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 181 (339)
+|.++++|+.+.+..+- .......|.++.+|+.+++..+ +.......+.++..|+.+.+..+... +.........|
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCC
Confidence 45555556666554432 1122334555555665555443 22122234444555555444333211 11112223445
Q ss_pred cEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeecccc
Q 036674 182 VELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAEN 260 (339)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 260 (339)
+.+.+.... .......+..+..++.+.+..+... .....+.. ..++.+....+.+ ....+..+.+|+.+.+.++
T Consensus 233 ~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 233 KNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT
T ss_pred ceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc
Confidence 555543221 1122334455555666655544322 22222222 4444444433221 1234455566666666543
Q ss_pred ccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccC
Q 036674 261 HFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMN 332 (339)
Q Consensus 261 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 332 (339)
+......+|.++++|+.+++..+ ++.....+|.++.+|+.+++..+ ++..-..+|.++++|+.+++..+
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 33334455666666666666533 44344455666666666666554 44333455666666666666443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=3.1e-11 Score=107.78 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=54.1
Q ss_pred CCCcEEeCCCCCCCCCCchhhc---CCCccceeeccccccCCCc----hHhhhcCCCCcEEEccccccccccchhcCC-C
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVC---RGGALQNFTVAENHFQGTI----PKSLRNCTSLIRVRVNGNNLTGNISEALGI-Y 297 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~ 297 (339)
++|+.|++.+|.+.+.....+. .+++|++|+++.|.+++.. +..+..+++|+.|++++|.+++.....+.. +
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 6777777777776543333332 4678888888888877543 333456788999999888887655444432 2
Q ss_pred CCCCEeeccccc
Q 036674 298 PNLNYIDLSRNN 309 (339)
Q Consensus 298 ~~L~~L~L~~n~ 309 (339)
...+++++++
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 3567887776
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.05 E-value=5.4e-09 Score=94.71 Aligned_cols=231 Identities=16% Similarity=0.083 Sum_probs=170.7
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCcCCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEEE
Q 036674 82 GRVVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNELFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFLY 161 (339)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (339)
..++.+.++.+- . .++...|.++.+|+.+++..+ ++.....+|.++..|+.+.+..+... +........+|+.+.
T Consensus 162 ~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 162 ESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNII 236 (394)
T ss_dssp TTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEE
T ss_pred CCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEE
Confidence 457778876543 2 344678999999999999876 44344567899999999998776543 334445568899998
Q ss_pred eeccCCCCCCCccccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCC
Q 036674 162 IDTNQLDGSIPPEVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTS 240 (339)
Q Consensus 162 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~ 240 (339)
+... .+......+..+..++.+.+..+... .....+..+..++.+....+.+. ...+.. .+|+.+.+..+ ++.
T Consensus 237 ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~ 310 (394)
T 4fs7_A 237 IPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKF 310 (394)
T ss_dssp ECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCE
T ss_pred ECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cce
Confidence 8654 33344567888999999999876543 45667888888888887765432 223333 88999998754 665
Q ss_pred CCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccC
Q 036674 241 YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGE 320 (339)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 320 (339)
.....|.++.+|+.+++.++ ++.....+|.++++|+.+.+..+ ++.....+|.++++|+++++..+- . .+...|.+
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~ 386 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFED 386 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCT
T ss_pred echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecC
Confidence 56678889999999999754 66566788999999999999877 666667889999999999997653 2 34567888
Q ss_pred CCCCCeE
Q 036674 321 YPKLGTL 327 (339)
Q Consensus 321 l~~L~~L 327 (339)
+++|+.+
T Consensus 387 c~~L~~I 393 (394)
T 4fs7_A 387 TTKFKWI 393 (394)
T ss_dssp TCEEEEE
T ss_pred CCCCcEE
Confidence 8888765
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.03 E-value=1.2e-08 Score=92.42 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=121.2
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEeCCCCc---CCCCCCccCCCCCccCeeeccCCCCcCcCchhhcCCCCCcEE
Q 036674 84 VVNISLPAKGLKGKLHDFSFSSFPHLAYLDLSHNE---LFGTIPPQISNLTNLSDLYLEGDQFSGNIPPEVGLMSHLKFL 160 (339)
Q Consensus 84 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (339)
++.+.++.. ++ .+...+|.++.+|+.+.+..+. ++..-..+|.++.+|+.+.+..+ +.......|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 566666543 33 3336678888888888876542 43233455667777776666543 222233455666666666
Q ss_pred EeeccCCCCCCCccccCCCCCcEEEeecCcC---------------------CCCCCCCCCCCCCCceeeccccc-----
Q 036674 161 YIDTNQLDGSIPPEVGQLSSLVELFLFFNHL---------------------SGSVPPSLGNLTNLQELILFCNN----- 214 (339)
Q Consensus 161 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~---------------------~~~~~~~l~~l~~L~~L~l~~n~----- 214 (339)
.+..+ +.......|..+..|+.+.+..+-- .......+..+.++.........
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~ 221 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAID 221 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSS
T ss_pred cccce-eeeecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccccc
Confidence 66432 2212233444445555544432210 00111122223333322211110
Q ss_pred -------------------------------CcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeecccccc
Q 036674 215 -------------------------------LSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHF 262 (339)
Q Consensus 215 -------------------------------l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 262 (339)
++.....++.. ..|+.+.+..+. .......|.++++|+.+.+.. .+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i 299 (394)
T 4gt6_A 222 NVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RI 299 (394)
T ss_dssp SCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TC
T ss_pred ceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCCC-cc
Confidence 00001112222 455555554322 222334455566666666643 34
Q ss_pred CCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCc
Q 036674 263 QGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNN 333 (339)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 333 (339)
+.....+|.++.+|+++.+..+ ++.....+|.++.+|+++.+..+ ++..-..+|.++++|+.+++.++.
T Consensus 300 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 300 TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 4344456677777777777643 44444556667777777777543 443334567777777777776653
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.86 E-value=9.7e-08 Score=86.41 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=92.7
Q ss_pred CCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCC
Q 036674 197 PSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTS 275 (339)
Q Consensus 197 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 275 (339)
.+|..+..|+.+.+..+... .....+.. +.|+.+.+. +.++......|.++.+|+.+++..+ ++.....+|.+|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35677888999988765433 34445555 899999996 4566656678889999999999864 55556778999999
Q ss_pred CcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCCCeEEcccCcC
Q 036674 276 LIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKLGTLNVSMNNI 334 (339)
Q Consensus 276 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 334 (339)
|+++.+..+ ++.....+|.++++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999999755 665667889999999999999876542 3567788899998887654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=3.2e-09 Score=85.65 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCCcEEeCCCC-CCCCC----CchhhcCCCccceeeccccccCCC----chHhhhcCCCCcEEEccccccccc----cch
Q 036674 226 PMLTRLDLDFN-HFTSY----LPHNVCRGGALQNFTVAENHFQGT----IPKSLRNCTSLIRVRVNGNNLTGN----ISE 292 (339)
Q Consensus 226 ~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~ 292 (339)
+.|++|++++| .+... +...+...++|++|++++|.+.+. +...+...++|++|++++|.+++. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 55666666666 55432 233444556777777777776643 234455567777777777777653 344
Q ss_pred hcCCCCCCCEeec--ccccCccc----CCccccCCCCCCeEEcccCcCc
Q 036674 293 ALGIYPNLNYIDL--SRNNFYGE----ISSNLGEYPKLGTLNVSMNNIT 335 (339)
Q Consensus 293 ~l~~~~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~lt 335 (339)
.+...+.|++|+| ++|.++.. +...+...++|+.|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5566677777877 67777642 3344555677788888777664
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.73 E-value=6.3e-07 Score=80.51 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=60.3
Q ss_pred CCCcEEeCCCCCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeec
Q 036674 226 PMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDL 305 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 305 (339)
..|+.+.+..+ ++......+..+.+|+.+.+..+ +.......|..+++|+.+.+.++.++.....+|.++.+|+.++|
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 55666655433 33333445556666666666543 33334455667777777777766666555666777777777777
Q ss_pred ccccCcccCCccccCCCCCCeEEcc
Q 036674 306 SRNNFYGEISSNLGEYPKLGTLNVS 330 (339)
Q Consensus 306 ~~n~l~~~~~~~l~~l~~L~~L~l~ 330 (339)
..+ ++..-..+|.++.+|+.+.+.
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEEC
Confidence 543 443334566667777666654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=2.1e-08 Score=85.08 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=62.8
Q ss_pred cCCCccceeeccccccCC--CchHhhhcCCCCcEEEcccccccccc-chhcCCCCCCCEeecccccCcccCC-------c
Q 036674 247 CRGGALQNFTVAENHFQG--TIPKSLRNCTSLIRVRVNGNNLTGNI-SEALGIYPNLNYIDLSRNNFYGEIS-------S 316 (339)
Q Consensus 247 ~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~-------~ 316 (339)
..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++.. ...+..+ +|++|+|++|.+.+.+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 457899999999999987 45577788999999999999998651 1223333 89999999999987655 2
Q ss_pred cccCCCCCCeEE
Q 036674 317 NLGEYPKLGTLN 328 (339)
Q Consensus 317 ~l~~l~~L~~L~ 328 (339)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 466789998886
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=6.5e-09 Score=83.80 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCcEEeCCCCCCCCC----CchhhcCCCccceeeccccccCCC----chHhhhcCCCCcEEEc--ccccccccc----c
Q 036674 226 PMLTRLDLDFNHFTSY----LPHNVCRGGALQNFTVAENHFQGT----IPKSLRNCTSLIRVRV--NGNNLTGNI----S 291 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l--~~n~l~~~~----~ 291 (339)
+.|++|+|++|.+... +...+...++|++|++++|.+++. +...+...++|++|++ ++|.+++.. .
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 5666777777766542 233344456778888888877653 3455666778888888 778877543 3
Q ss_pred hhcCCCCCCCEeecccccCc
Q 036674 292 EALGIYPNLNYIDLSRNNFY 311 (339)
Q Consensus 292 ~~l~~~~~L~~L~L~~n~l~ 311 (339)
..+...+.|++|+|++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 44455678888888888875
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=5.9e-08 Score=76.64 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCCCC-CCCCCcEEeCCCCCCCCCCchhhcCCCccceeeccccc-cCCCchHhhhcC----CCCcEEEcccc-ccccccc
Q 036674 219 IPPSL-DNPMLTRLDLDFNHFTSYLPHNVCRGGALQNFTVAENH-FQGTIPKSLRNC----TSLIRVRVNGN-NLTGNIS 291 (339)
Q Consensus 219 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~l~~n-~l~~~~~ 291 (339)
+|... ....|++|++++|.++...-..+.++++|++|+|++|. +++..-..+..+ ++|++|++++| ++++..-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 45433 33679999999998887767778888999999999985 665555555553 47899999988 4887666
Q ss_pred hhcCCCCCCCEeeccccc
Q 036674 292 EALGIYPNLNYIDLSRNN 309 (339)
Q Consensus 292 ~~l~~~~~L~~L~L~~n~ 309 (339)
..+..+++|++|++++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 677788999999999886
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=1.4e-07 Score=80.05 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=51.5
Q ss_pred CCCcEEeCCCCCCCC--CCchhhcCCCccceeeccccccCCCchHhhhcCC--CCcEEEccccccccccc-------hhc
Q 036674 226 PMLTRLDLDFNHFTS--YLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCT--SLIRVRVNGNNLTGNIS-------EAL 294 (339)
Q Consensus 226 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~-------~~l 294 (339)
++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+..| ..+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 577888888888776 3345566777888888888877754 2233333 77888888887775443 235
Q ss_pred CCCCCCCEee
Q 036674 295 GIYPNLNYID 304 (339)
Q Consensus 295 ~~~~~L~~L~ 304 (339)
..+|+|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5677777775
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.43 E-value=1e-05 Score=72.56 Aligned_cols=146 Identities=12% Similarity=0.058 Sum_probs=102.1
Q ss_pred cccCCCCCcEEEeecCcCCCCCCCCCCCCCCCceeecccccCcccCCCCCCC-CCCcEEeCCCCCCCCCCchhhcCCCcc
Q 036674 174 EVGQLSSLVELFLFFNHLSGSVPPSLGNLTNLQELILFCNNLSGSIPPSLDN-PMLTRLDLDFNHFTSYLPHNVCRGGAL 252 (339)
Q Consensus 174 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L 252 (339)
.+.....|+.+.+..+ +.......+..+..|+.+.+..+ ++......+.. .+|+.+.+..+ ++......|.++++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445566777766543 23234456777888888888765 44344445555 78899888643 555455678889999
Q ss_pred ceeeccccccCCCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccCcccCCccccCCCCC
Q 036674 253 QNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNFYGEISSNLGEYPKL 324 (339)
Q Consensus 253 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 324 (339)
+.+.+.++.++.....+|.++.+|+.+.+..+ ++.....+|.++++|+++.+..+ ++..-..+|.+++.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 99999888887667788999999999999754 55555678889999999998654 543344566665433
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.4e-07 Score=74.53 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=53.5
Q ss_pred CccceeeccccccCCCchHhhhcCCCCcEEEcccc-ccccccchhcCCC----CCCCEeeccccc-CcccCCccccCCCC
Q 036674 250 GALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN-NLTGNISEALGIY----PNLNYIDLSRNN-FYGEISSNLGEYPK 323 (339)
Q Consensus 250 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 323 (339)
..|++||++++.++...-..+..+++|++|++++| .+++..-..+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45777777777766655555667777777777777 3665555555543 367777777765 55433334556777
Q ss_pred CCeEEcccCc
Q 036674 324 LGTLNVSMNN 333 (339)
Q Consensus 324 L~~L~l~~n~ 333 (339)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.81 E-value=1.2e-05 Score=64.62 Aligned_cols=108 Identities=13% Similarity=0.205 Sum_probs=61.3
Q ss_pred CCCcEEeCCCC-CCCCC----CchhhcCCCccceeeccccccCCC----chHhhhcCCCCcEEEccccccccc----cch
Q 036674 226 PMLTRLDLDFN-HFTSY----LPHNVCRGGALQNFTVAENHFQGT----IPKSLRNCTSLIRVRVNGNNLTGN----ISE 292 (339)
Q Consensus 226 ~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~ 292 (339)
+.|++|++++| ++... +.+.+..-+.|+.|+|++|++.+. +...+...+.|++|+|++|.|.+. +.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45666666653 44321 223344456666777777666532 334455566777777777777653 233
Q ss_pred hcCCCCCCCEeecccc---cCcc----cCCccccCCCCCCeEEcccCc
Q 036674 293 ALGIYPNLNYIDLSRN---NFYG----EISSNLGEYPKLGTLNVSMNN 333 (339)
Q Consensus 293 ~l~~~~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~ 333 (339)
.+...+.|++|+|++| .+.. .+...+..-++|+.|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4455566777777654 3332 234445556677777777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=0.0001 Score=59.21 Aligned_cols=89 Identities=7% Similarity=0.091 Sum_probs=69.3
Q ss_pred hhhcCCCccceeecccc-ccCCC----chHhhhcCCCCcEEEccccccccccc----hhcCCCCCCCEeecccccCcc--
Q 036674 244 HNVCRGGALQNFTVAEN-HFQGT----IPKSLRNCTSLIRVRVNGNNLTGNIS----EALGIYPNLNYIDLSRNNFYG-- 312 (339)
Q Consensus 244 ~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~-- 312 (339)
..+..-+.|++|++++| ++... +-..+...+.|++|+|++|++.+... +.+...+.|++|+|++|.++.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455688999999986 77643 44566778999999999999986443 445567899999999999974
Q ss_pred --cCCccccCCCCCCeEEcccC
Q 036674 313 --EISSNLGEYPKLGTLNVSMN 332 (339)
Q Consensus 313 --~~~~~l~~l~~L~~L~l~~n 332 (339)
.+...+..-+.|+.|+|++|
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 34556777788999999876
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.00052 Score=51.34 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=29.0
Q ss_pred eeeccccccC-CCchHhhhcCCCCcEEEccccccccccchhcCCCCCCCEeecccccC
Q 036674 254 NFTVAENHFQ-GTIPKSLRNCTSLIRVRVNGNNLTGNISEALGIYPNLNYIDLSRNNF 310 (339)
Q Consensus 254 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 310 (339)
.++.++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 23333221 3456666666666655555555556666666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.0017 Score=48.49 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=46.6
Q ss_pred cEEeCCCCCCC-CCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEccccccc
Q 036674 229 TRLDLDFNHFT-SYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGNNLT 287 (339)
Q Consensus 229 ~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 287 (339)
..++.++++++ ..+|..+ .++|+.|+|++|+++...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888887 2356443 357999999999999877888999999999999999876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.24 E-value=8 Score=26.73 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=30.4
Q ss_pred CCCCCCCchhhcCCCccceeeccccccCCCchHhhhcCCCCcEEEcccc
Q 036674 236 NHFTSYLPHNVCRGGALQNFTVAENHFQGTIPKSLRNCTSLIRVRVNGN 284 (339)
Q Consensus 236 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (339)
..++......|.++.+|+.+.+-.+ ++.....+|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3445555566777777777777663 44455566777777777777653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.91 E-value=21 Score=24.48 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=4.7
Q ss_pred CCCCCCCCEEeC
Q 036674 103 FSSFPHLAYLDL 114 (339)
Q Consensus 103 ~~~l~~L~~L~l 114 (339)
|.++..|+.+.+
T Consensus 16 F~~c~~L~~i~i 27 (100)
T 2lz0_A 16 FAGNTVIREITV 27 (100)
T ss_dssp TTTCTTCCCEEE
T ss_pred hcCCCCCcEEEc
Confidence 333344444333
Done!