Query 036676
Match_columns 413
No_of_seqs 127 out of 1121
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:24:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 3.5E-56 7.7E-61 474.9 43.8 394 7-412 22-415 (832)
2 COG0475 KefB Kef-type K+ trans 100.0 6.4E-46 1.4E-50 367.3 38.6 354 28-411 6-362 (397)
3 PRK03562 glutathione-regulated 100.0 9.1E-46 2E-50 385.5 40.1 350 29-412 6-359 (621)
4 PRK10669 putative cation:proto 100.0 2.8E-45 6.1E-50 380.1 39.3 359 29-412 7-367 (558)
5 PRK03659 glutathione-regulated 100.0 1.4E-44 3E-49 376.0 39.6 351 29-412 6-356 (601)
6 KOG1650 Predicted K+/H+-antipo 100.0 3.6E-42 7.9E-47 362.3 28.9 396 7-412 2-400 (769)
7 PRK05326 potassium/proton anti 100.0 1.2E-40 2.6E-45 345.3 34.9 356 26-409 4-362 (562)
8 COG4651 RosB Kef-type K+ trans 100.0 1.2E-39 2.5E-44 294.9 26.8 363 22-410 1-365 (408)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 1.3E-42 2.8E-47 344.9 -3.4 352 36-412 4-357 (380)
10 TIGR00932 2a37 transporter, mo 100.0 1.7E-37 3.8E-42 294.4 30.6 271 38-337 2-273 (273)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 9.2E-33 2E-37 284.8 37.5 375 15-405 2-386 (810)
12 COG0025 NhaP NhaP-type Na+/H+ 100.0 8.1E-29 1.8E-33 247.3 36.6 350 29-401 7-368 (429)
13 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2.1E-28 4.6E-33 250.8 35.2 333 35-398 5-363 (525)
14 COG3263 NhaP-type Na+/H+ and K 100.0 8.6E-27 1.9E-31 221.2 27.2 355 27-411 6-362 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 100.0 2.7E-25 5.9E-30 228.0 33.6 357 27-400 8-378 (559)
16 KOG4505 Na+/H+ antiporter [Ino 99.9 2.8E-23 6E-28 191.1 21.8 359 30-403 16-384 (467)
17 KOG1965 Sodium/hydrogen exchan 99.8 5.5E-18 1.2E-22 168.4 24.1 359 28-399 35-414 (575)
18 PRK14853 nhaA pH-dependent sod 99.6 3.5E-13 7.6E-18 132.1 29.3 271 87-402 61-363 (423)
19 TIGR00773 NhaA Na+/H+ antiport 99.5 3.3E-12 7.1E-17 123.0 23.8 270 87-402 51-344 (373)
20 KOG1966 Sodium/hydrogen exchan 99.3 1.3E-11 2.8E-16 122.9 8.5 352 27-396 41-406 (670)
21 PRK14856 nhaA pH-dependent sod 99.1 1.4E-08 3.1E-13 99.6 23.0 269 87-402 67-398 (438)
22 PRK09560 nhaA pH-dependent sod 99.1 2.1E-08 4.6E-13 97.0 22.9 270 87-402 58-353 (389)
23 PRK09561 nhaA pH-dependent sod 99.1 3.2E-08 6.8E-13 95.6 23.1 270 87-402 58-351 (388)
24 PRK14854 nhaA pH-dependent sod 99.1 4.2E-08 9.1E-13 94.4 22.8 271 87-402 55-348 (383)
25 PRK14855 nhaA pH-dependent sod 99.0 5.5E-08 1.2E-12 95.1 22.7 266 87-402 62-383 (423)
26 PF06965 Na_H_antiport_1: Na+/ 98.9 1.3E-08 2.8E-13 98.2 12.5 272 86-403 53-352 (378)
27 COG3004 NhaA Na+/H+ antiporter 98.9 1E-06 2.2E-11 82.2 22.2 266 89-403 63-355 (390)
28 PF05684 DUF819: Protein of un 98.2 0.004 8.7E-08 61.6 29.7 287 51-385 24-330 (378)
29 TIGR00698 conserved hypothetic 97.9 0.025 5.4E-07 54.9 27.8 144 47-212 26-174 (335)
30 COG0786 GltS Na+/glutamate sym 97.9 0.0063 1.4E-07 59.1 22.2 95 288-384 247-344 (404)
31 PF03601 Cons_hypoth698: Conse 97.8 0.006 1.3E-07 58.5 21.8 150 39-211 12-167 (305)
32 TIGR00210 gltS sodium--glutama 97.8 0.042 9.1E-07 54.7 27.3 99 287-389 243-345 (398)
33 PF03616 Glt_symporter: Sodium 97.8 0.042 9.1E-07 54.3 27.1 94 287-387 245-345 (368)
34 TIGR00832 acr3 arsenical-resis 97.4 0.14 2.9E-06 49.9 27.2 104 94-210 46-153 (328)
35 PF01758 SBF: Sodium Bile acid 97.3 0.019 4.1E-07 51.1 16.1 107 95-215 2-113 (187)
36 COG3493 CitS Na+/citrate sympo 97.2 0.052 1.1E-06 52.4 19.2 65 328-393 332-398 (438)
37 COG0798 ACR3 Arsenite efflux p 97.2 0.24 5.3E-06 47.4 23.1 192 47-259 12-203 (342)
38 PF03390 2HCT: 2-hydroxycarbox 97.2 0.31 6.7E-06 48.4 25.2 314 29-393 30-379 (414)
39 COG0385 Predicted Na+-dependen 97.1 0.2 4.3E-06 48.0 21.2 158 87-258 34-191 (319)
40 PF13593 DUF4137: SBF-like CPA 96.9 0.46 9.9E-06 46.0 23.6 114 90-214 30-147 (313)
41 TIGR00932 2a37 transporter, mo 96.7 0.023 5E-07 53.7 11.9 126 277-408 4-131 (273)
42 COG2855 Predicted membrane pro 96.7 0.66 1.4E-05 44.6 26.1 154 35-211 18-176 (334)
43 TIGR00783 ccs citrate carrier 96.5 0.83 1.8E-05 44.4 20.9 263 100-393 34-312 (347)
44 PRK12460 2-keto-3-deoxyglucona 96.5 0.42 9.1E-06 45.6 18.5 205 96-383 50-254 (312)
45 PRK03818 putative transporter; 96.4 0.06 1.3E-06 56.2 14.0 130 29-178 7-141 (552)
46 PRK03562 glutathione-regulated 96.4 0.12 2.6E-06 54.8 16.4 149 37-205 225-375 (621)
47 PF03956 DUF340: Membrane prot 96.4 0.042 9.1E-07 49.0 10.8 127 56-211 2-136 (191)
48 PF06826 Asp-Al_Ex: Predicted 96.3 0.1 2.2E-06 45.6 12.3 127 34-179 3-136 (169)
49 TIGR00841 bass bile acid trans 96.2 0.73 1.6E-05 43.9 19.3 105 94-213 11-120 (286)
50 PRK03659 glutathione-regulated 96.2 0.24 5.1E-06 52.5 16.8 151 37-207 222-374 (601)
51 TIGR03802 Asp_Ala_antiprt aspa 96.1 0.048 1E-06 57.0 11.2 100 30-145 12-115 (562)
52 PRK10669 putative cation:proto 95.9 0.13 2.9E-06 53.9 13.7 129 274-409 15-145 (558)
53 PF03601 Cons_hypoth698: Conse 95.9 0.13 2.8E-06 49.4 12.1 126 274-401 7-137 (305)
54 PF03812 KdgT: 2-keto-3-deoxyg 95.4 0.86 1.9E-05 43.4 15.2 174 95-344 49-222 (314)
55 COG0475 KefB Kef-type K+ trans 95.3 1.2 2.7E-05 44.5 17.3 104 31-144 222-326 (397)
56 PRK05326 potassium/proton anti 95.1 0.27 5.9E-06 51.6 12.3 126 274-404 15-143 (562)
57 TIGR00946 2a69 he Auxin Efflux 95.0 1.1 2.3E-05 43.5 15.4 140 47-209 176-316 (321)
58 TIGR03082 Gneg_AbrB_dup membra 94.9 0.61 1.3E-05 40.2 12.2 95 35-143 2-98 (156)
59 PRK04972 putative transporter; 94.7 0.5 1.1E-05 49.4 12.9 122 30-178 14-140 (558)
60 TIGR00698 conserved hypothetic 94.3 0.66 1.4E-05 45.1 11.8 108 287-397 29-139 (335)
61 TIGR00210 gltS sodium--glutama 94.2 1.5 3.3E-05 43.7 14.6 163 31-209 222-393 (398)
62 COG2855 Predicted membrane pro 94.1 0.4 8.6E-06 46.1 9.7 109 284-395 32-140 (334)
63 TIGR01625 YidE_YbjL_dupl AspT/ 94.1 0.57 1.2E-05 40.2 9.8 113 51-180 20-138 (154)
64 TIGR00831 a_cpa1 Na+/H+ antipo 94.0 0.29 6.2E-06 50.9 9.4 117 273-394 6-124 (525)
65 PLN03159 cation/H(+) antiporte 94.0 1.5 3.3E-05 48.2 15.3 136 41-197 282-423 (832)
66 PRK12460 2-keto-3-deoxyglucona 93.1 0.88 1.9E-05 43.4 10.1 77 55-144 169-245 (312)
67 COG3180 AbrB Putative ammonia 92.7 11 0.00023 36.9 25.9 97 30-140 8-110 (352)
68 TIGR00808 malonate_madM malona 92.5 2.5 5.5E-05 37.5 11.3 108 31-145 19-133 (254)
69 TIGR03082 Gneg_AbrB_dup membra 92.4 2.4 5.1E-05 36.5 11.2 118 274-398 4-124 (156)
70 TIGR03802 Asp_Ala_antiprt aspa 92.2 2.4 5.1E-05 44.5 13.0 132 32-180 390-531 (562)
71 TIGR00844 c_cpa1 na(+)/h(+) an 92.0 1.5 3.3E-05 47.2 11.3 70 321-392 75-146 (810)
72 COG1346 LrgB Putative effector 91.9 9.3 0.0002 34.8 14.5 108 86-207 61-169 (230)
73 PF03616 Glt_symporter: Sodium 91.5 3.4 7.3E-05 40.9 12.6 108 32-146 225-335 (368)
74 PRK09903 putative transporter 91.4 6.9 0.00015 37.7 14.6 117 50-188 171-288 (314)
75 TIGR00793 kdgT 2-keto-3-deoxyg 91.4 6.9 0.00015 37.2 13.6 91 96-189 50-141 (314)
76 PRK04972 putative transporter; 91.4 4.1 8.8E-05 42.7 13.6 135 30-181 383-527 (558)
77 PF05145 AmoA: Putative ammoni 90.8 3.1 6.7E-05 40.3 11.3 97 30-140 154-252 (318)
78 COG2985 Predicted permease [Ge 90.7 1.8 3.9E-05 43.6 9.6 119 55-195 37-159 (544)
79 PF00999 Na_H_Exchanger: Sodiu 90.2 0.096 2.1E-06 51.9 0.3 111 277-390 8-123 (380)
80 COG4651 RosB Kef-type K+ trans 89.0 4.1 8.9E-05 38.7 10.0 131 270-409 11-145 (408)
81 PRK03818 putative transporter; 86.6 10 0.00022 39.7 12.5 129 31-176 372-513 (552)
82 COG0786 GltS Na+/glutamate sym 84.3 20 0.00043 35.5 12.2 112 28-146 222-336 (404)
83 TIGR00783 ccs citrate carrier 83.6 15 0.00031 36.0 11.0 99 40-144 191-292 (347)
84 PF03956 DUF340: Membrane prot 82.5 2.4 5.2E-05 37.8 4.9 100 293-397 2-105 (191)
85 COG0025 NhaP NhaP-type Na+/H+ 82.2 10 0.00022 38.5 9.9 72 322-395 64-137 (429)
86 COG2431 Predicted membrane pro 81.3 12 0.00025 35.1 8.9 80 54-146 108-191 (297)
87 PF03390 2HCT: 2-hydroxycarbox 80.7 49 0.0011 33.1 13.7 101 38-144 256-359 (414)
88 COG0679 Predicted permeases [G 79.6 60 0.0013 31.2 18.2 85 50-144 166-251 (311)
89 PF03812 KdgT: 2-keto-3-deoxyg 78.9 12 0.00025 35.9 8.3 75 56-143 175-249 (314)
90 PF05145 AmoA: Putative ammoni 78.6 66 0.0014 31.1 24.6 127 270-403 157-286 (318)
91 PF05982 DUF897: Domain of unk 78.3 20 0.00044 34.5 9.8 80 89-181 205-289 (327)
92 PF04172 LrgB: LrgB-like famil 73.5 72 0.0016 29.0 12.3 71 99-181 59-130 (215)
93 TIGR00793 kdgT 2-keto-3-deoxyg 71.8 28 0.0006 33.3 8.8 76 55-143 174-249 (314)
94 COG3263 NhaP-type Na+/H+ and K 71.7 49 0.0011 33.4 10.7 107 280-391 22-133 (574)
95 PRK15475 oxaloacetate decarbox 71.1 51 0.0011 32.3 10.5 76 269-347 265-340 (433)
96 PRK15476 oxaloacetate decarbox 70.6 54 0.0012 32.2 10.5 76 269-347 265-340 (433)
97 PRK15477 oxaloacetate decarbox 70.5 54 0.0012 32.2 10.5 76 269-347 265-340 (433)
98 PRK05274 2-keto-3-deoxyglucona 70.3 60 0.0013 31.5 11.1 48 97-144 53-100 (326)
99 COG3180 AbrB Putative ammonia 70.1 63 0.0014 31.6 11.1 100 33-144 190-289 (352)
100 PRK04288 antiholin-like protei 68.9 96 0.0021 28.5 14.8 71 99-181 75-146 (232)
101 TIGR03136 malonate_biotin Na+- 67.6 1.3E+02 0.0028 29.6 23.1 256 30-347 21-306 (399)
102 PF03547 Mem_trans: Membrane t 66.4 25 0.00054 34.7 8.0 104 291-397 8-114 (385)
103 PRK09903 putative transporter 65.7 44 0.00094 32.2 9.3 86 291-379 11-97 (314)
104 COG2985 Predicted permease [Ge 63.5 72 0.0016 32.6 10.2 135 30-181 367-511 (544)
105 TIGR01109 Na_pump_decarbB sodi 63.5 1.5E+02 0.0032 28.8 18.0 76 269-347 194-269 (354)
106 TIGR01625 YidE_YbjL_dupl AspT/ 56.8 38 0.00083 29.0 6.3 89 292-380 24-118 (154)
107 PRK04125 murein hydrolase regu 54.8 1.3E+02 0.0028 25.4 10.9 104 27-136 7-110 (141)
108 COG3329 Predicted permease [Ge 54.5 71 0.0015 30.5 8.0 116 289-410 16-134 (372)
109 COG1346 LrgB Putative effector 53.1 1.8E+02 0.004 26.6 12.1 85 310-407 62-146 (230)
110 TIGR00840 b_cpa1 sodium/hydrog 50.2 98 0.0021 32.6 9.3 73 321-395 69-150 (559)
111 PF03977 OAD_beta: Na+-transpo 49.2 2.6E+02 0.0057 27.2 26.4 249 37-347 8-269 (360)
112 TIGR00841 bass bile acid trans 45.5 50 0.0011 31.4 5.9 105 293-401 144-249 (286)
113 PRK04288 antiholin-like protei 42.2 2.8E+02 0.0061 25.5 12.5 81 313-406 68-148 (232)
114 PRK01658 holin-like protein; V 41.0 2E+02 0.0044 23.5 11.0 103 28-136 5-107 (122)
115 PF03977 OAD_beta: Na+-transpo 41.0 2.7E+02 0.0059 27.1 9.7 74 321-398 68-141 (360)
116 KOG2722 Predicted membrane pro 40.2 53 0.0011 32.3 5.0 107 297-406 25-137 (408)
117 PRK01821 hypothetical protein; 40.1 2.2E+02 0.0048 23.7 10.4 104 27-136 9-112 (133)
118 COG3493 CitS Na+/citrate sympo 39.1 4E+02 0.0088 26.5 11.6 110 30-144 265-378 (438)
119 TIGR00659 conserved hypothetic 38.8 3.1E+02 0.0068 25.1 14.1 71 99-181 69-140 (226)
120 KOG1650 Predicted K+/H+-antipo 38.5 3.6E+02 0.0079 29.6 11.7 107 93-209 312-420 (769)
121 PRK10711 hypothetical protein; 36.7 3.4E+02 0.0074 25.0 13.6 72 98-181 69-141 (231)
122 KOG2718 Na+-bile acid cotransp 32.9 1.4E+02 0.003 29.6 6.7 32 94-125 116-147 (371)
123 COG1883 OadB Na+-transporting 31.3 4.7E+02 0.01 25.0 11.6 59 289-348 227-285 (375)
124 TIGR03136 malonate_biotin Na+- 30.2 5.5E+02 0.012 25.4 12.1 76 319-397 102-177 (399)
125 PF06826 Asp-Al_Ex: Predicted 29.2 2E+02 0.0043 25.1 6.5 90 290-380 24-117 (169)
126 PF03547 Mem_trans: Membrane t 27.4 5.9E+02 0.013 24.8 13.6 62 47-114 239-300 (385)
127 PRK04125 murein hydrolase regu 27.4 3.8E+02 0.0082 22.6 9.6 43 325-368 69-113 (141)
128 PRK05274 2-keto-3-deoxyglucona 26.5 6.1E+02 0.013 24.7 12.5 47 96-142 204-250 (326)
129 TIGR02185 Trep_Strep conserved 25.7 4.7E+02 0.01 23.1 14.5 25 350-374 161-185 (189)
130 PRK14853 nhaA pH-dependent sod 25.3 6.3E+02 0.014 25.6 10.0 24 315-338 61-84 (423)
131 COG3333 Uncharacterized protei 25.1 92 0.002 31.5 4.0 36 30-68 411-446 (504)
132 PF13194 DUF4010: Domain of un 24.2 5.3E+02 0.012 23.2 16.5 69 134-212 9-77 (211)
133 TIGR02359 thiW thiW protein. L 23.8 4.8E+02 0.01 22.5 11.5 16 54-69 34-49 (160)
134 COG2270 Permeases of the major 23.7 7.8E+02 0.017 25.0 13.8 112 177-304 245-357 (438)
135 PF02355 SecD_SecF: Protein ex 22.7 5.4E+02 0.012 22.7 13.8 52 124-180 60-111 (189)
136 PF03649 UPF0014: Uncharacteri 21.5 6.6E+02 0.014 23.3 10.8 30 23-52 2-31 (250)
137 PRK14854 nhaA pH-dependent sod 21.5 2.8E+02 0.0061 27.5 6.5 24 315-338 55-78 (383)
138 PF11286 DUF3087: Protein of u 21.1 2.6E+02 0.0056 24.3 5.4 38 107-144 5-43 (165)
139 PRK01663 C4-dicarboxylate tran 21.0 8.7E+02 0.019 24.5 14.8 19 197-215 147-165 (428)
140 KOG1965 Sodium/hydrogen exchan 20.9 2.2E+02 0.0049 29.8 5.9 72 323-396 104-182 (575)
141 PRK14855 nhaA pH-dependent sod 20.9 2.3E+02 0.0051 28.5 5.9 25 315-339 62-86 (423)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=3.5e-56 Score=474.92 Aligned_cols=394 Identities=55% Similarity=0.998 Sum_probs=348.3
Q ss_pred cccccCCCcccCCCCcccchHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCch
Q 036676 7 SIKTSSNGVWQGDNPLDFAFPLLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWST 86 (413)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~ 86 (413)
|.+.+|+|+|+|+||++|++++++++++++++++.+++.++||+|+|+++|||++|+++||+++|.++.+.+.++|.+..
T Consensus 22 ~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~ 101 (832)
T PLN03159 22 PMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSV 101 (832)
T ss_pred CCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchH
Confidence 45889999999999999999999999999999999999999999999999999999999999999998777888887777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhh
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALS 166 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s 166 (413)
+.++.++++|++++||.+|+|+|++.+||++|+++.+++.++++|+++++.+..+++... .........+++|.++|
T Consensus 102 ~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~---~~~~~~~~~l~~g~alS 178 (832)
T PLN03159 102 MVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVS---RNVHQGTFILFLGVALS 178 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccchhHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999988877664321 11112245788999999
Q ss_pred hcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 036676 167 ITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTV 246 (413)
Q Consensus 167 ~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 246 (413)
.||.+++.++++|+|+.+++.|+++++.++++|+.+++++++...+...+ .......+.++..+++.+++.++
T Consensus 179 ~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~-------~~~~~~l~~~l~~~~f~~~~~~v 251 (832)
T PLN03159 179 VTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAEND-------STSLASLWVLLSSVAFVLFCFYV 251 (832)
T ss_pred HhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887665433 11222334555566677777788
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhh
Q 036676 247 IRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLP 326 (413)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~p 326 (413)
.+++++|+.|+.+ ++++.++.+..+++..+++++++++.+|+|+++|||++|+++++ .+.++++.++++++..++|.|
T Consensus 252 ~r~~~~~~~r~~~-~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflP 329 (832)
T PLN03159 252 VRPGIWWIIRRTP-EGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLP 329 (832)
T ss_pred HHHHHHHHHHhCc-CCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHH
Confidence 8999999999987 55666788888888888899999999999999999999999998 788899999999999999999
Q ss_pred HHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhcccc
Q 036676 327 LYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVS 406 (413)
Q Consensus 327 lfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii 406 (413)
+||+.+|+++|+..+.+...|...+.++++++++|+++++++++++|.++||++.+|+.|++||+++++++.++++.|++
T Consensus 330 lFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi 409 (832)
T PLN03159 330 LFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVL 409 (832)
T ss_pred HHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 99999999999988865334655566777789999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 036676 407 FNFLRS 412 (413)
Q Consensus 407 ~~~~~s 412 (413)
+++.|+
T Consensus 410 ~~~~f~ 415 (832)
T PLN03159 410 DDESFA 415 (832)
T ss_pred Cchhhh
Confidence 999886
No 2
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-46 Score=367.25 Aligned_cols=354 Identities=31% Similarity=0.556 Sum_probs=298.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 036676 28 LLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLE 107 (413)
Q Consensus 28 ~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle 107 (413)
..+.++.+++.++.+.+.++||+|+|+++||+++|+++||..++.. .++++.++.++|+|++++||.+|+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHHC
Confidence 3578899999999999999999999999999999999999555443 2367889999999999999999999
Q ss_pred cChHHHHhcCcc-hhHHHHHHhHHHHHHHHHHHH-HhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCc
Q 036676 108 LDLSSIRRSGKR-AFVIAFAGISLPFVCGIGVAF-VLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTT 185 (413)
Q Consensus 108 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~ 185 (413)
.|.+++||++|+ ....+..++..|+.++..... .+++++ ..++++|.+++.||+++++++++|+|+.++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---------~~al~lg~~l~~sS~~i~~~iL~e~~~~~~ 147 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL---------IAALFLGAALALSSTAIVLKILMELGLLKT 147 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccCh---------HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999 777777777778777755444 355543 679999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 036676 186 RVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVV 265 (413)
Q Consensus 186 ~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~ 265 (413)
|.|+.+++.+++||+.++++++++..+...+. .+............++.++..+..++..+++.|+.. +.+.
T Consensus 148 ~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~------~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~--~~~~ 219 (397)
T COG0475 148 REGQLILGALVFDDIAAILLLAIVPALAGGGS------GSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVA--KTES 219 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC------ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccc
Confidence 99999999999999999999999998765541 112112333344455555555556677777777775 2245
Q ss_pred chHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCch-HHHHHHHHHhhHhhhhhHHHHHhhcccccccccch
Q 036676 266 DEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFA-ERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDA 344 (413)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~-~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~ 344 (413)
+|.....++.+++..++++|..|+|+.+|||++|+++++ .+++ ++++++++++.+++|.|+||+.+|+++|++.+.+
T Consensus 220 ~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~- 297 (397)
T COG0475 220 SELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE- 297 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc-
Confidence 788889999999999999999999999999999999999 5555 7999999999655999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhccccccccc
Q 036676 345 KSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNFLR 411 (413)
Q Consensus 345 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~~~ 411 (413)
.+...+.++.+.+++|.++++..+|..|.++|++...|..+.++||++++.++.+.+ +.++++.+
T Consensus 298 -~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~ 362 (397)
T COG0475 298 -NLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALL 362 (397)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHH
Confidence 454567788888999999999999999999999999999999999999999988887 45555443
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=9.1e-46 Score=385.50 Aligned_cols=350 Identities=21% Similarity=0.319 Sum_probs=294.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 036676 29 LIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLEL 108 (413)
Q Consensus 29 ~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~ 108 (413)
++.++.+++.++.+...++||+|+|+++||+++|+++||+++|+++ +.+.++.++++|+++++|.+|+|+
T Consensus 6 ~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLEl 75 (621)
T PRK03562 6 TLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLEL 75 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhCc
Confidence 6889999999999999999999999999999999999999999864 356789999999999999999999
Q ss_pred ChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhH
Q 036676 109 DLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVG 188 (413)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~ 188 (413)
|++++|+.+|+++..+..++.+++.+++.+.+++++++ ..++++|.+++.||+++++++++|+|+.+++.|
T Consensus 76 ~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~---------~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G 146 (621)
T PRK03562 76 DPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRW---------QVALLIGLGLALSSTAIAMQAMNERNLMVTQMG 146 (621)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Confidence 99999999999999999999999988887777776543 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCCCC
Q 036676 189 ETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFM----LTVIRPAMRWVARRCSPEHDV 264 (413)
Q Consensus 189 ~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~v~~~~~~~~~~~~~~~~~~ 264 (413)
|.+++.+++||+.++++++++..++.... . .+...........+++.++. .++.+++++|+.|+.
T Consensus 147 ~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~------ 215 (621)
T PRK03562 147 RSAFAILLFQDIAAIPLVAMIPLLAASGA--S---TTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG------ 215 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCC--c---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999998876543221 0 01111111112222222222 233444444443332
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccch
Q 036676 265 VDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDA 344 (413)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~ 344 (413)
.+|.+....+.++++.+++++.+|+|+.+|||++|+++++ ++++++++++++++ ++++.|+||+.+|+++|++.+.+
T Consensus 216 ~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~- 292 (621)
T PRK03562 216 LREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLE- 292 (621)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHH-
Confidence 3567778888888999999999999999999999999998 78899999999999 89999999999999999988776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhcccccccccc
Q 036676 345 KSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNFLRS 412 (413)
Q Consensus 345 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~~~s 412 (413)
.++..+.++++.+++|.++++..++++|.++++++.+|+.|+++||++++++..+.+.|+++++.|+
T Consensus 293 -~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~ 359 (621)
T PRK03562 293 -NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAK 359 (621)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHH
Confidence 3444556666789999999999999999999999999999999999999999999999999999875
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=380.12 Aligned_cols=359 Identities=21% Similarity=0.274 Sum_probs=298.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 036676 29 LIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLEL 108 (413)
Q Consensus 29 ~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~ 108 (413)
++..+..+++++.+.+.++||+|+|++++|+++|+++||+++|..+ +.+..+.++++|+++++|.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3567788999999999999999999999999999999999998754 246789999999999999999999
Q ss_pred ChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhH
Q 036676 109 DLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVG 188 (413)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~ 188 (413)
|++++|+.++.....+..++++++.+++...+.+++++ ..++++|.+++.||++++++.++|+|+.+++.|
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G 147 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSL---------MTGIVFGLCLSTASTVVLLRALEERQLIDSQRG 147 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcch
Confidence 99999999877777778888888888887777776543 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcch
Q 036676 189 ETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSP-VIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDE 267 (413)
Q Consensus 189 ~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~ 267 (413)
|.+++.+++||+.+++.+.+...+......++.+.... ....+.++..+++.++..++.++..+|+.++.+ +. ..+|
T Consensus 148 ~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~e 225 (558)
T PRK10669 148 QIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSA-AT-GSRE 225 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCch
Confidence 99999999999999998888766543221001100111 112234445555666666778888999988876 22 2467
Q ss_pred HHHHHHHHHHHHHHHH-HHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhh
Q 036676 268 AYICLTLAGVMVSGFM-TDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKS 346 (413)
Q Consensus 268 ~~~~~~l~~~~~~~~~-a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~ 346 (413)
.+....+.++++++.. ++.+|+|+.+|||++|+++++ ++.++++.+...++ .++|.|+||+.+|+++|+..+.+ .
T Consensus 226 ~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~ 301 (558)
T PRK10669 226 LFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--Q 301 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--H
Confidence 7777777777777754 699999999999999999998 67777887777777 78999999999999999988765 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhcccccccccc
Q 036676 347 WGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNFLRS 412 (413)
Q Consensus 347 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~~~s 412 (413)
+...+.++++++++|+++++..++++|.++|+++.+|+.|++|||++++++..+++.|++|++.|+
T Consensus 302 ~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~ 367 (558)
T PRK10669 302 PLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQN 367 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHH
Confidence 444555677789999999999999999999999999999999999999999999999999999885
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.4e-44 Score=376.05 Aligned_cols=351 Identities=20% Similarity=0.293 Sum_probs=291.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 036676 29 LIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLEL 108 (413)
Q Consensus 29 ~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~ 108 (413)
++.++.+++.++.+...++||+|+|+++||+++|+++||+++|+++ +.+.++.++++|+++++|..|+|+
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667888899999999999999999999999999999999999875 245688999999999999999999
Q ss_pred ChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhH
Q 036676 109 DLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVG 188 (413)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~ 188 (413)
|++++|+.+|+++.++..++++|+.+++...++++.++ ..++++|.+++.||++++.++++|+|+.+++.|
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~---------~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G 146 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFSW---------QAAVVGGIGLAMSSTAMALQLMREKGMNRSESG 146 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH---------HHHHHHHHHHHHHHHHHHHHHHHHcccccCchH
Confidence 99999999999999999999999877766665555433 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchH
Q 036676 189 ETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDEA 268 (413)
Q Consensus 189 ~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~ 268 (413)
++.++..+++|+.+++++.+...+..... + ..........+... ++.....+++.+++.++.. +.+.+|.
T Consensus 147 ~~~l~vll~~Di~~i~ll~l~~~l~~~~~---~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~e~ 216 (601)
T PRK03659 147 QLGFSVLLFQDLAVIPALALVPLLAGSAD---E-HFDWMKIGMKVLAF----AGMLIGGRYLLRPLFRFIA--ASGVREV 216 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC---c-chHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--HcCCchH
Confidence 99999999999999999988766553221 0 00111111111111 1222223334444443332 1123678
Q ss_pred HHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHH
Q 036676 269 YICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWG 348 (413)
Q Consensus 269 ~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~ 348 (413)
+....+.++++.+++++.+|+|+.+|||++|+++++ ++++++++++++++ +++|.|+||+.+|+++|++.+.+ .|.
T Consensus 217 ~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~--~~~ 292 (601)
T PRK03659 217 FTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT--HLL 292 (601)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH--hHH
Confidence 888888888999999999999999999999999998 78889999999999 89999999999999999988876 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhcccccccccc
Q 036676 349 LLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNFLRS 412 (413)
Q Consensus 349 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~~~s 412 (413)
..+.++++.+++|.++++..++.+|.++++++.+|..|+||||++++++..+.+.|+++++.|+
T Consensus 293 ~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~ 356 (601)
T PRK03659 293 WVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMA 356 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHH
Confidence 5666677788999999999999999999999999999999999999999999999999998875
No 6
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-42 Score=362.34 Aligned_cols=396 Identities=53% Similarity=0.870 Sum_probs=350.3
Q ss_pred cccccCCCcccCCCCcccchHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCch
Q 036676 7 SIKTSSNGVWQGDNPLDFAFPLLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWST 86 (413)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~ 86 (413)
+++-.+.|.|+++||++|++|++++++.++++++.+++.++|++|.|+++.++++|+++||+.+|....+.+..+|....
T Consensus 2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~ 81 (769)
T KOG1650|consen 2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM 81 (769)
T ss_pred CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence 56778999999999999999999999999999999999999999999999999999999999999998888888887788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhccc--CCCCCCchHHHHHHHH
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDG--LDQVGYGPFLVFMGVA 164 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~lg~~ 164 (413)
..++.++.+|..+++|..|+|+|.+.+||.+|++..+++.++++|+..+............. ........+-.....+
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSA 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999887776655221110 0000011245677788
Q ss_pred hhhcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 036676 165 LSITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFML 244 (413)
Q Consensus 165 ~s~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (413)
.+.|+.+++.+++.|+|+.++++||+++++++++|+.+|.++........... .+.....+.....+++.+...
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 235 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELK------LSPLRSVWDLVLVIGFVLFLF 235 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCC------CcchHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999998888877655441 234445566677777877888
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhh
Q 036676 245 TVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIG-IHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGL 323 (413)
Q Consensus 245 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g-~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~ 323 (413)
++.++.+.|+.||++ ++++.++.+....+...+.++.+.+.++ +++.+|+|..|+.+|+++|.++.+.||+|++..++
T Consensus 236 ~v~~p~~~wi~kr~p-e~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~ 314 (769)
T KOG1650|consen 236 FVVRPLMKWIIKRTP-EGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGL 314 (769)
T ss_pred eehhhhHHHHhhcCC-CCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHH
Confidence 899999999999987 8888888999989998899999999888 89999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhc
Q 036676 324 LLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEK 403 (413)
Q Consensus 324 f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~ 403 (413)
+.|+||+..|++.|+..+.. |......+....++|++++...+.+++.++||+..+|..|+.||.++++....+++.
T Consensus 315 llPl~~~~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~ 391 (769)
T KOG1650|consen 315 LLPLYFAISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDR 391 (769)
T ss_pred HHHHHHHhhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 99999999999999988765 555666777778999999999999999999999999999999999999999999999
Q ss_pred ccccccccc
Q 036676 404 KVSFNFLRS 412 (413)
Q Consensus 404 gii~~~~~s 412 (413)
|+++++.|+
T Consensus 392 ~~~~~~~f~ 400 (769)
T KOG1650|consen 392 KILSDEGFT 400 (769)
T ss_pred CCcccchHH
Confidence 999999885
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.2e-40 Score=345.35 Aligned_cols=356 Identities=17% Similarity=0.169 Sum_probs=291.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHh
Q 036676 26 FPLLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVG 105 (413)
Q Consensus 26 ~~~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~G 105 (413)
...+++.++++++++.+.+.+++|+|+|.+++|+++|+++||.++|.++. ++.+..+.++++++.+++|.+|
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcCc
Confidence 34568889999999999999999999999999999999999999986531 2456789999999999999999
Q ss_pred hhcChHHHHhcCcchhHHHHHHhHHHHHHH-HHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcc-c
Q 036676 106 LELDLSSIRRSGKRAFVIAFAGISLPFVCG-IGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKL-L 183 (413)
Q Consensus 106 le~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~-~ 183 (413)
+|+|++.+|+++|++..++..++++|+.+. ..+.++++.++ ..++++|+++++||++++.++++|+|+ .
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~---------~~alllgai~s~Td~a~v~~iL~~~~l~l 146 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLDW---------LEGLLLGAIVGSTDAAAVFSLLRGKGLNL 146 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHhhhhccCchHHHHHHHhccCCCc
Confidence 999999999999999999999999998774 44455555543 789999999999999999999999994 6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 036676 184 TTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHD 263 (413)
Q Consensus 184 ~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~ 263 (413)
+++.++++++++.+||.++++++.+...+...+. . .........+...++.+++.++++++...|+.+|.+ .
T Consensus 147 ~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~-~-- 218 (562)
T PRK05326 147 KERVASTLEIESGSNDPMAVFLTITLIELITGGE--T---GLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA-L-- 218 (562)
T ss_pred chhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCC--C---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-C--
Confidence 9999999999999999999998888877654431 0 111222334444555666777788888888888774 1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCch-HHHHHHHHHhhHhhhhhHHHHHhhccccccccc
Q 036676 264 VVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFA-ERLIERIEDFVSGLLLPLYFASSGLKTDVATIR 342 (413)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~-~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~ 342 (413)
..++.+..+.++.++.+++++|.+|.|+.+|+|++|++++|.+..+ ++..+..+.+ .+++.|+||+++|+.+|++.+.
T Consensus 219 ~~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l-~~l~~~~~Fv~lGl~~~~~~l~ 297 (562)
T PRK05326 219 PAEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGL-AWLAQIGMFLVLGLLVTPSRLL 297 (562)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHH
Confidence 1245677788888899999999999999999999999999854333 4444445555 7899999999999999998876
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhccccccc
Q 036676 343 DAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNF 409 (413)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~ 409 (413)
+. .+...++.++..+++|++++++..+.++.++||+..++|. ++||++++++|..+.+.|+.+.+
T Consensus 298 ~~-~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~ 362 (562)
T PRK05326 298 DI-ALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQ 362 (562)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchh
Confidence 52 2322233344567899999999999999999999999995 89999999999999999998743
No 8
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=294.93 Aligned_cols=363 Identities=23% Similarity=0.309 Sum_probs=305.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHH
Q 036676 22 LDFAFPLLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFL 101 (413)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~ 101 (413)
++|++|+ +..+...+..++++|.+++|+|+|+.+||+++|++.||...|...+ ......++|+|++++|
T Consensus 1 m~h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad----------~~La~~LAelGViLLm 69 (408)
T COG4651 1 MHHDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVAD----------QTLAPELAELGVILLM 69 (408)
T ss_pred CCCCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccc----------hhHHHHHHHhhHHHHH
Confidence 4677777 7777888999999999999999999999999999999998887652 4556689999999999
Q ss_pred HHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhc
Q 036676 102 FLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELK 181 (413)
Q Consensus 102 F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~ 181 (413)
|..|++++.+++...+..+..-++.+..+....+....+..|+++ ...+++|.++|..|+.+..+.++|++
T Consensus 70 FgvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~---------~~glvfGlaLS~aSTVvllraLqEr~ 140 (408)
T COG4651 70 FGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF---------GTGIVFGLALSVASTVVLLRALEERQ 140 (408)
T ss_pred HhcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc---------ccceeeeehhhhHHHHHHHHHHHHhc
Confidence 999999999999876665666677777777777777777777655 56789999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 036676 182 LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGT-ASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSP 260 (413)
Q Consensus 182 ~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~ 260 (413)
+.+++.||+..+.-+++|+.+++.+.....++..-+ ++.+...-.....+...+...|..++..+.|++.+|+..+..
T Consensus 141 lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a- 219 (408)
T COG4651 141 LIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVA- 219 (408)
T ss_pred cccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999988877765432 111111112222344557888888898999999999998875
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH-HHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccc
Q 036676 261 EHDVVDEAYICLTLAGVMVSGFM-TDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVA 339 (413)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~-a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~ 339 (413)
..-++|.+.+.+++++++.++. ++.+|+|+.+|||.+|+++++ ++.++|..|..-+. ++.|..+||+.+||..|+.
T Consensus 220 -~tGsrElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e-selshraa~~slpL-rdaFaVlFFvsVGmlf~P~ 296 (408)
T COG4651 220 -ATGSRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE-SELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPM 296 (408)
T ss_pred -HcCcHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcc-hhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcH
Confidence 2234788889899999887766 679999999999999999998 78888888888888 8999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhcccccccc
Q 036676 340 TIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNFL 410 (413)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~~ 410 (413)
.+.++ .+ .++....+.+.+|-...+...+.+|.+.|.+..++.++.+.||++++++.++.+.+.+++..
T Consensus 297 ~l~~~-pl-~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~g 365 (408)
T COG4651 297 ILIQQ-PL-AVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAG 365 (408)
T ss_pred Hhhcc-hH-HHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHH
Confidence 98873 45 35556666788999999999999999999999999999999999999999999999998754
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.3e-42 Score=344.94 Aligned_cols=352 Identities=30% Similarity=0.522 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHh
Q 036676 36 ILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRR 115 (413)
Q Consensus 36 ~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~ 115 (413)
+++.+.+.+.++||+|+|++++|+++|+++||..++..++ +.+..+.+.++|+.+++|.+|+|+|.+++||
T Consensus 4 li~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~---------~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~ 74 (380)
T PF00999_consen 4 LILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP---------DNPSFELLAEIGLAFLLFEAGLELDIKELRR 74 (380)
T ss_dssp -----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----
T ss_pred EeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc---------hhhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4455666677899999999999999999999999886542 1367889999999999999999999999999
Q ss_pred cCcchhHHHHHHhHHHHHH-HHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhHHHHHHH
Q 036676 116 SGKRAFVIAFAGISLPFVC-GIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMSA 194 (413)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~~~~l~~ 194 (413)
++|+....++.++.+++.+ ++.+.+++.. . +++. ..++++|.++++|||+++.++++|++..+++.+++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~-~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~ 148 (380)
T PF00999_consen 75 NWRRALALGLVGFLLPFILVGFLLSFFLFI-L----GLSW-AEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSE 148 (380)
T ss_dssp ---------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTT
T ss_pred ccccccccccceeeehhhHHHHHHHHhhcc-c----hhhh-HHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhh
Confidence 9999999999999999888 6666643210 1 2233 789999999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHH
Q 036676 195 AAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTL 274 (413)
Q Consensus 195 a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 274 (413)
+++||+.+++++.+.......+. . .+...........+ ..+.+.+...+|+.++..|+.+++++.....++
T Consensus 149 ~~i~d~~~i~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (380)
T PF00999_consen 149 SVINDIIAIILLSILISLAQASG---Q--SSLGQLLLSFLWII----LIGIVIGLLFGWLLRRLIRRASPSSEIFILLVL 219 (380)
T ss_dssp TTTTTTTTTTTT--------------------------------------------------------------------
T ss_pred chhhccchhhhhhhhhhhhcccc---c--ccccchhcchhhhh----hhheeeecccchHHHHhhhhccccchhhHHHHH
Confidence 99999999999998887662210 0 12222222222222 233344444445544443222245677888889
Q ss_pred HHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhccccccccc-chhhHHHHHHH
Q 036676 275 AGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIR-DAKSWGLLALV 353 (413)
Q Consensus 275 ~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~-~~~~~~~~~~~ 353 (413)
..++..++.+|.+|.|+.+|+|++|+++++ .+.+++.+|+++++.++++.|+||+.+|+++|++.+. +...+...+.+
T Consensus 220 ~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~ 298 (380)
T PF00999_consen 220 ALILLLYGLAEILGLSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLL 298 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhccccccccccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHH
Confidence 999999999999999999999999999996 7777889999999966999999999999999998884 11356667777
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhcccccccccc
Q 036676 354 ITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNFLRS 412 (413)
Q Consensus 354 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~~~s 412 (413)
.+...++|+++++..++..|.++||+..+++.+.|||+++++++..+.+.|+++++.|+
T Consensus 299 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~ 357 (380)
T PF00999_consen 299 LIAILLGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFT 357 (380)
T ss_dssp ------------------------HHHHTTTTSS--HHHHHHHHHHHHH----------
T ss_pred HHHHHHhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHH
Confidence 77778999999999999999999999999999999999999999999999999998875
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.7e-37 Score=294.36 Aligned_cols=271 Identities=27% Similarity=0.472 Sum_probs=228.4
Q ss_pred HHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcC
Q 036676 38 VVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSG 117 (413)
Q Consensus 38 ~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~ 117 (413)
+++.+.+.++||+|+|++++|+++|+++||+.+|.++ +.+..+.++++|+.+++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4677889999999999999999999999999988764 346799999999999999999999999999999
Q ss_pred cchhHHHHHHhHHH-HHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhHHHHHHHHH
Q 036676 118 KRAFVIAFAGISLP-FVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMSAAA 196 (413)
Q Consensus 118 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~~~~l~~a~ 196 (413)
|+...++..++++| +.+++.+.++++.++ ..++++|+++++||++++.++++|+|+.+++.+++++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~ 142 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGLAL---------GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILL 142 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHH
Confidence 99999999999999 677776777776544 78999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHH
Q 036676 197 FNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAG 276 (413)
Q Consensus 197 ~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (413)
+||+.+++.+.+........+ .+............+..++...+.++..+|+.|+.+ +. +++|.....++..
T Consensus 143 ~~D~~~i~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~ 214 (273)
T TIGR00932 143 FQDIAVVPLLALLPLLATSAS------TEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTA-EL-RPSELFTAGSLLL 214 (273)
T ss_pred HHHHHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc-CCchHHHHHHHHH
Confidence 999999999998887654221 122222223333343444555677788888888775 22 2357778888888
Q ss_pred HHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccc
Q 036676 277 VMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTD 337 (413)
Q Consensus 277 ~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld 337 (413)
++..+.++|.+|.|+.+|||++|+.++| .+.++++.++++++. ++|.|+||+++|+++|
T Consensus 215 ~~~~~~la~~~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 215 MFGSAYFADLLGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 8999999999999999999999999999 555788999999996 9999999999999987
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=9.2e-33 Score=284.83 Aligned_cols=375 Identities=14% Similarity=0.189 Sum_probs=271.4
Q ss_pred cccCCCCcccchHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHH
Q 036676 15 VWQGDNPLDFAFPLLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVAS 94 (413)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~ 94 (413)
.|+.-++.+.++.+.++. +.+++.+++..++.+|+++|..+.++++|+++||.++|++++.. + .........+++
T Consensus 2 ~w~~l~~~~~~l~~~~lG-~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~---g~~d~i~leIte 76 (810)
T TIGR00844 2 IWEQLEVTKAHVAYSCVG-IFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-W---GNTDSITLEISR 76 (810)
T ss_pred CcccccccchhhHHHHHH-HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-c---ccchHHHHHHHH
Confidence 477766766554443332 23445556656666699999999999999999999998766420 0 111233333999
Q ss_pred HHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHH
Q 036676 95 IGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLA 174 (413)
Q Consensus 95 lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~ 174 (413)
+++.+++|.+|++++.+.+|++++.+.++...++.++++++.++.+++-+.+ +| ..++++|+++++|||+...
T Consensus 77 IvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL----~~---~~ALLLGAILAPTDPVLAs 149 (810)
T TIGR00844 77 ILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL----NF---PASLLMGACITATDPVLAQ 149 (810)
T ss_pred HHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CH---HHHHHHHhhhcCCcHHHHH
Confidence 9999999999999999999999999999999999999888877776652222 22 7899999999999998888
Q ss_pred HHHH---HhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 175 RILA---ELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAM 251 (413)
Q Consensus 175 ~il~---~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 251 (413)
.+++ ..+ .+.+++.++.+++.+||.++++++.+.+.+..... .+++ ....+....++..++.+++++++++++.
T Consensus 150 sV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~-~g~~-~~~~w~l~~~L~~i~~GiliG~vvG~l~ 226 (810)
T TIGR00844 150 SVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPG-RGGE-IVKDWICVTILWECIFGSILGCIIGYCG 226 (810)
T ss_pred HHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccC-cccc-chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887 335 68999999999999999999988877765543221 0111 1111122333334444455555555555
Q ss_pred HHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHH-HHHHHHhhHhhhhhHHHH
Q 036676 252 RWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERL-IERIEDFVSGLLLPLYFA 330 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~-~~~i~~~~~~~f~plfF~ 330 (413)
.|+.++..+++....+.+....+++++.++.+++.+|.++++++|+||+.+++..+..++. .+.+......++...+|+
T Consensus 227 ~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFV 306 (810)
T TIGR00844 227 RKAIRFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFV 306 (810)
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHH
Confidence 5555443312222345666677788888889999999999999999999999854333221 233444557788999999
Q ss_pred Hhhcccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHhhchhhHHHHHHHHhhhcc
Q 036676 331 SSGLKTDVATIRD----AKSWGLLALVITTACAGKILGTFAVAVML--KIPARESIVLGVLMNTKGLVELIVLNIGKEKK 404 (413)
Q Consensus 331 ~~G~~ld~~~l~~----~~~~~~~~~~~~~~~~~k~~~~~~~~~~~--~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~g 404 (413)
++|+.+++..+.. ...|..+++.+++.++.|+.++++.+.+. ..++||++++|| .+|||..+++++.+|++++
T Consensus 307 lLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~ 385 (810)
T TIGR00844 307 YLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQL 385 (810)
T ss_pred HHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhh
Confidence 9999998877643 12466566666677788988888765543 468999999999 6999999999999999988
Q ss_pred c
Q 036676 405 V 405 (413)
Q Consensus 405 i 405 (413)
.
T Consensus 386 ~ 386 (810)
T TIGR00844 386 E 386 (810)
T ss_pred h
Confidence 6
No 12
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.1e-29 Score=247.28 Aligned_cols=350 Identities=19% Similarity=0.173 Sum_probs=274.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 036676 29 LIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLEL 108 (413)
Q Consensus 29 ~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~ 108 (413)
.++...+++..+.....+.+|.+.|.++.+++.|++.||.+++..++- ....-+.+.++.+..++|..|.|+
T Consensus 7 ~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~--------~~~~~el~~~l~l~ilLf~~g~~l 78 (429)
T COG0025 7 LLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPD--------LELDPELFLVLFLAILLFAGGLEL 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccc--------ccCChHHHHHHHHHHHHHHhHhcC
Confidence 467778888999999999999999999999999999999998876531 112233344999999999999999
Q ss_pred ChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhH
Q 036676 109 DLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVG 188 (413)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~ 188 (413)
|.+++||+++.+..+++..+++++.......+++.++ ++. ..++++|+++++|||.++.++.++.| .++++.
T Consensus 79 ~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~------i~~-~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~ 150 (429)
T COG0025 79 DLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPG------IPL-AAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIR 150 (429)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------hhH-HHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHH
Confidence 9999999999999999999999877766666666322 222 79999999999999999999999988 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchH
Q 036676 189 ETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDEA 268 (413)
Q Consensus 189 ~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~ 268 (413)
+++.+|+.+||..+++.+.+........+. .+.......++..+..++..+++.++...|+.++..+++..+...
T Consensus 151 ~iL~gESl~ND~~giv~f~~~l~~~~~~~~-----~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~ 225 (429)
T COG0025 151 TILEGESLLNDGVGIVLFKVALAALLGTGA-----FSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLL 225 (429)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHH
Confidence 999999999999999999999987764310 122333334444444445555555555555555554222233456
Q ss_pred HHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCC-----CCCch-HHHHHHHHHhhHhhhhhHHHHHhhccccccccc
Q 036676 269 YICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPK-----GGNFA-ERLIERIEDFVSGLLLPLYFASSGLKTDVATIR 342 (413)
Q Consensus 269 ~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~-----~~~~~-~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~ 342 (413)
.....+...+..+.++|.+|.|+++++.++|+..++ ..+.. ++..+.+.+....+++...|++.|++++.....
T Consensus 226 ~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~ 305 (429)
T COG0025 226 ETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL 305 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 678889999999999999999999999999997741 12212 333344544457899999999999999998877
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCchhHHHHHHHhhchhhHHHHHHHHhh
Q 036676 343 DAKSWGLLALVITTACAGKILGTFAVAVML------KIPARESIVLGVLMNTKGLVELIVLNIGK 401 (413)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~------~~~~~~~~~~g~~l~~rg~~~lv~a~~a~ 401 (413)
.. .+...++.+...++.|+++++...+.. ..++||+.+++|. +|||.+++..+....
T Consensus 306 ~~-~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p 368 (429)
T COG0025 306 AL-GLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIP 368 (429)
T ss_pred Hh-hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHch
Confidence 62 355667788888999999999999874 3799999999996 999999998887654
No 13
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=2.1e-28 Score=250.83 Aligned_cols=333 Identities=17% Similarity=0.125 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHH
Q 036676 35 LILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIR 114 (413)
Q Consensus 35 ~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~ 114 (413)
.+++++.....+++|+|+|++++++++|+++||...+... ..+. +.+..+++..++|.+|+|+|.+++|
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~--------~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV--------PLDR---EIVLFLFLPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC--------CCCH---HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4455566667889999999999999999999986443210 0112 2345589999999999999999999
Q ss_pred hcCcchhHHHHHHhHHHHHHHHHHHHH-hhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhHHHHHH
Q 036676 115 RSGKRAFVIAFAGISLPFVCGIGVAFV-LRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMS 193 (413)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~~~~l~ 193 (413)
|+++.+..+++.+++++++.+....++ .+.++ ..++++|+++++|||+++.++++|.+ .+++..+++.+
T Consensus 74 ~~~~~i~~la~~~vlit~~~v~~~~~~~~~l~~---------~~alllGails~TDpvav~~il~~~~-~p~rl~~il~g 143 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVVVGFSLNWILGIPL---------ALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEG 143 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhh
Confidence 999999999999999998776555443 33332 78999999999999999999999988 69999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHH
Q 036676 194 AAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLT 273 (413)
Q Consensus 194 ~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (413)
++.+||..+++++.+......+.+ ..+.......+......+++.+++.++...|+.|+.. + ++.....++
T Consensus 144 ESllND~~alvlf~~~~~~~~~~~-----~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~--~--~~~~~~~l~ 214 (525)
T TIGR00831 144 ESLLNDGAALVVFAIAVAVALGKG-----VFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKI--D--DPLVEIALT 214 (525)
T ss_pred hhhhcchHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c--ccHHHHHHH
Confidence 999999999999998887664321 0233323333333334445555666666666665432 1 234556778
Q ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCc---hHHH---HHHHHHhhHhhhhhHHHHHhhcccccccc--cc-h
Q 036676 274 LAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNF---AERL---IERIEDFVSGLLLPLYFASSGLKTDVATI--RD-A 344 (413)
Q Consensus 274 l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~---~~~~---~~~i~~~~~~~f~plfF~~~G~~ld~~~l--~~-~ 344 (413)
+..++..+.+||.+|.|++++++++|+.+++..+. .++. .+.+.+....++++++|+++|++++.... .. .
T Consensus 215 l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~ 294 (525)
T TIGR00831 215 ILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEI 294 (525)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 88889999999999999999999999999984332 1222 22333334788999999999999874211 10 0
Q ss_pred h-h-----HHH---HHHHHHHHHHHHHHHHHHHH--HH-----hCCCchhHHHHHHHhhchhhHHHHHHH
Q 036676 345 K-S-----WGL---LALVITTACAGKILGTFAVA--VM-----LKIPARESIVLGVLMNTKGLVELIVLN 398 (413)
Q Consensus 345 ~-~-----~~~---~~~~~~~~~~~k~~~~~~~~--~~-----~~~~~~~~~~~g~~l~~rg~~~lv~a~ 398 (413)
. . +.. .+.+.......|++..+... +. .+.+|||+..++|+ ++||.+++.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~-G~RG~vslA~al 363 (525)
T TIGR00831 295 LVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWA-GLRGAIPLALAL 363 (525)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheec-cchHHHHHHHHH
Confidence 0 0 100 11122223344554433321 11 24679999999996 999999998874
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.6e-27 Score=221.20 Aligned_cols=355 Identities=18% Similarity=0.200 Sum_probs=293.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 036676 27 PLLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGL 106 (413)
Q Consensus 27 ~~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gl 106 (413)
..+++.-.++..++.+....+.|+++|-.+.++..|++.|.-++|.++- ++.+....++++++..|+|..|+
T Consensus 6 ~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdgG~ 77 (574)
T COG3263 6 NLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDGGF 77 (574)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcCcc
Confidence 3333333477788888899999999999999999999999999886652 35778889999999999999999
Q ss_pred hcChHHHHhcCcchhHHHHHHhHHHHHH-HHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCc
Q 036676 107 ELDLSSIRRSGKRAFVIAFAGISLPFVC-GIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTT 185 (413)
Q Consensus 107 e~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~ 185 (413)
..+++.+|...++++.++..+++++-.+ +..+.+.++.++ .+++++|++..+||.+.+..++++++ +++
T Consensus 78 ~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~w---------le~~LiGAiVgSTDAAAVF~lL~~~n-l~e 147 (574)
T COG3263 78 GTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDW---------LEGLLIGAIVGSTDAAAVFSLLGGKN-LNE 147 (574)
T ss_pred CCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHH---------HHHHHHHHhhccccHHHHHHHHccCC-hhh
Confidence 9999999999999999999999997655 455555666544 89999999999999999999999999 699
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 036676 186 RVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVV 265 (413)
Q Consensus 186 ~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~ 265 (413)
+.+..++.+|.=||.+++.+....+.+...++ ++ -+.. .+..++.-..++++.++..+++..++.+|.+ -+
T Consensus 148 rv~stLEiESGtNDPmAvfLTitlieli~~ge-t~---l~~~-~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n----Ld 218 (574)
T COG3263 148 RVASTLEIESGSNDPMAVFLTITLIELIAGGE-TN---LSWG-FLLGFLQQFGLGLLLGLGGGKLLLQLINRIN----LD 218 (574)
T ss_pred hhhhhEEeecCCCCceeeehhHHHHHHHhccc-cc---cCHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc----cc
Confidence 99999999999999999987776666554441 01 1222 1223556666777888888999999888875 23
Q ss_pred chHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCC-chHHHHHHHHHhhHhhhhhHHHHHhhcccccccccch
Q 036676 266 DEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGN-FAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDA 344 (413)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~-~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~ 344 (413)
+..+..+.++..++.+.+++..|.|++++.+++|++++|.+- .++.+.+..+.+ .++...+.|...|....++++...
T Consensus 219 ~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~i 297 (574)
T COG3263 219 SGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPI 297 (574)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHh
Confidence 567888899999999999999999999999999999999432 334556667777 899999999999999999998873
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhccccccccc
Q 036676 345 KSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNFLR 411 (413)
Q Consensus 345 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~~~ 411 (413)
.....++.+...+++|++++|+....++.++||+++++|. +-||.+++++|....-.|.-+.++|
T Consensus 298 -avPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSWv-GLRGAv~IilAifpm~aglena~l~ 362 (574)
T COG3263 298 -AIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSWV-GLRGAVPIILAIFPMMAGLENARLF 362 (574)
T ss_pred -hHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeehh-hcccchhhhHhhhHHhcCCccceEE
Confidence 5555566666778899999999999999999999999995 9999999999999998887776654
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.95 E-value=2.7e-25 Score=227.98 Aligned_cols=357 Identities=12% Similarity=0.106 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-c-CCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHH
Q 036676 27 PLLIVQTTLILVVSRFLAFLFRP-L-RQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLV 104 (413)
Q Consensus 27 ~~~~~~~~~~l~~~~l~~~l~~r-~-~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~ 104 (413)
|..+....++..++.+.-.+.+| . ++|..+..++.|+++|+...+.... +. ..-.-+.+..+.+-.++|++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~------~~-~~l~~~lf~~~~LPpIlFe~ 80 (559)
T TIGR00840 8 PYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHI------DP-PTLDSSYFFLYLLPPIVLDA 80 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCC------cc-CCcCHHHHHHHHHHHHHHHH
Confidence 33344444444445554444444 4 5999999999999999864332110 00 01113456667888999999
Q ss_pred hhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcc-cCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhccc
Q 036676 105 GLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTID-GLDQVGYGPFLVFMGVALSITAFPVLARILAELKLL 183 (413)
Q Consensus 105 Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~ 183 (413)
|.++|.+.+|++.+.+..+++.+++++.++.....+++..... +..+++. ..++++|+++++|||+++.++++|.+ .
T Consensus 81 g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~-~~allfGAiiSaTDPVAVlai~~~~~-v 158 (559)
T TIGR00840 81 GYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGL-LDNLLFGSLISAVDPVAVLAVFEEYH-V 158 (559)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCH-HHHHHHhHHhcCCchHHHHHHHHhcC-C
Confidence 9999999999999999999999999986655444443221000 0112233 79999999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 036676 184 TTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHD 263 (413)
Q Consensus 184 ~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~ 263 (413)
++++.+++.+||.+||.++++++.....+...+. ++.+..+..............+++++++.+....++.|+.+ ..
T Consensus 159 ~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~-~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~--~~ 235 (559)
T TIGR00840 159 NEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTAD-EPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTH--HI 235 (559)
T ss_pred CcchhhheehhhhhhccHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cc
Confidence 9999999999999999999999998887654221 00000111111111111122245556666777777777664 11
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCC-----CCchHHHHHHHHHhhHhhhhhHHHHHhhccccc
Q 036676 264 VVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKG-----GNFAERLIERIEDFVSGLLLPLYFASSGLKTDV 338 (413)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~-----~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~ 338 (413)
+.....+++..++..+.+||.+|.|++++++++|+++++. ++..++..+.+......+...+.|+++|+++..
T Consensus 236 --~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~ 313 (559)
T TIGR00840 236 --RQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVT 313 (559)
T ss_pred --chhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2345567788888889999999999999999999999752 222222223333333678889999999998743
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCchhHHHHHHHhhchhhHHHHHHHHh
Q 036676 339 ATIRDAKSWGLLALVITTACAGKILGTFAVAVM------LKIPARESIVLGVLMNTKGLVELIVLNIG 400 (413)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~------~~~~~~~~~~~g~~l~~rg~~~lv~a~~a 400 (413)
.... ..|...+..+++.++.|+++++...+. .+.++||+..++|+ ++||.+++.+|...
T Consensus 314 ~~~~--~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~-GlRGaVa~aLAl~l 378 (559)
T TIGR00840 314 ENHE--WNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYA-GLRGAVAFALALLL 378 (559)
T ss_pred chhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheeee-ccccHHHHHHHHhC
Confidence 2211 134444444555678899998876653 34799999999995 99999999988654
No 16
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.8e-23 Score=191.08 Aligned_cols=359 Identities=14% Similarity=0.185 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcC
Q 036676 30 IVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELD 109 (413)
Q Consensus 30 ~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~ 109 (413)
...=+...+.+...-.+-+|+-+...+.-.+.|+++||+.+|+.++. .+.+.+.....++.+-+..-.|.++.|+.
T Consensus 16 ~~~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~----~wgn~d~it~ei~RvvLcvqvfava~eLP 91 (467)
T KOG4505|consen 16 AASGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPN----SWGNKDYITYEISRVVLCVQVFAVAMELP 91 (467)
T ss_pred HHHhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCc----cccCcchhhhhhhhhhHhHHHHHHHHhcc
Confidence 33335566667777778888999999999999999999999987652 12334456778899999999999999999
Q ss_pred hHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHh---cccCch
Q 036676 110 LSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAEL---KLLTTR 186 (413)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~---~~~~~~ 186 (413)
...+.++++....+-..-++.-+.+.+...+.+.+. .+. ..++.+++++++|||.....++.+. |+.+++
T Consensus 92 r~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~------lnf-~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPer 164 (467)
T KOG4505|consen 92 RAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPN------LNF-LTSLLIAACITATDPILSSSIVGGGKFAKRVPER 164 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccH-HHHHHHHHHccCCchhHHHHHhcCchHhhhChHH
Confidence 999999999888877666666677766666666443 233 7899999999999976666666544 346889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 036676 187 VGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVD 266 (413)
Q Consensus 187 ~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~ 266 (413)
++.++.+++..||.+++.++.+.+-+..... .......+ ....++.-+.++.+.+++.+.+.+...|...+++--+.
T Consensus 165 iR~lL~AESGcNDGMaipflflai~Ll~h~~--~r~~~rdw-v~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~ 241 (467)
T KOG4505|consen 165 IRNLLAAESGCNDGMAIPFLFLAIDLLRHKP--RRKAGRDW-VCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDR 241 (467)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHHhcCc--hhccCCce-ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 9999999999999999998887776543321 10001111 12233444555555555555555555544432344567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHH-HHHHhhHhhhhhHHHHHhhcccccccccch-
Q 036676 267 EAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIE-RIEDFVSGLLLPLYFASSGLKTDVATIRDA- 344 (413)
Q Consensus 267 ~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~-~i~~~~~~~f~plfF~~~G~~ld~~~l~~~- 344 (413)
|.++..-+.+.+.+.++.+.+|++.++-.|.||++++.+..+.++..| ++..+.+-++...||++.|+.+|++++...
T Consensus 242 eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~ 321 (467)
T KOG4505|consen 242 ESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSV 321 (467)
T ss_pred HHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcc
Confidence 899999999999999999999999999999999999998777776655 467777778899999999999999888764
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCchhHHHHHHHhhchhhHHHHHHHHhhhc
Q 036676 345 ---KSWGLLALVITTACAGKILGTFAVAVMLK--IPARESIVLGVLMNTKGLVELIVLNIGKEK 403 (413)
Q Consensus 345 ---~~~~~~~~~~~~~~~~k~~~~~~~~~~~~--~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~ 403 (413)
+.|..++.-+.+.+.-|+..+++....-. .+|||++++|. .+|.|.-++..|.++...
T Consensus 322 ~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~~ 384 (467)
T KOG4505|consen 322 EGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARKE 384 (467)
T ss_pred cCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHhh
Confidence 25766655555555557766666544322 58999999999 699999888888887643
No 17
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.5e-18 Score=168.38 Aligned_cols=359 Identities=14% Similarity=0.135 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC---CChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHH
Q 036676 28 LLIVQTTLILVVSRFLAFLFRPLR---QPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLV 104 (413)
Q Consensus 28 ~~~~~~~~~l~~~~l~~~l~~r~~---iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~ 104 (413)
.-++....++.++.+.++++++.| +|..+.-++.|+++|-......+...+ .......-.-+.+-..-+--+.|+.
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~-~~~~~~~f~~~~ff~vLLPpiif~s 113 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSS-RGKRILVFSPDLFFLVLLPPIIFNS 113 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCccc-ccceeEEecccHHHHHhhchhhhcc
Confidence 445666778888999999999998 999999999999999653222111000 0000000001234445555689999
Q ss_pred hhhcChHHHHhcCcchhHHHHHHhHHH-HHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhccc
Q 036676 105 GLELDLSSIRRSGKRAFVIAFAGISLP-FVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLL 183 (413)
Q Consensus 105 Gle~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~ 183 (413)
|.+++-+.++|+...+...++.+..++ ++++..++.+.. .. ...+++. .+++.+|+++|+|||..+.++++|++ .
T Consensus 114 gy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~-~~~~~~f-~d~L~fGaliSATDPVtvLaIfnel~-v 189 (575)
T KOG1965|consen 114 GYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GL-LIYDLSF-KDCLAFGALISATDPVTVLAIFNELG-V 189 (575)
T ss_pred cceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-cc-ccccccH-HHHHHHhhHhcccCchHHHHHHHHhC-C
Confidence 999999999999999999999888885 556666655432 11 1224545 89999999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 036676 184 TTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPV-IAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEH 262 (413)
Q Consensus 184 ~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~ 262 (413)
+.+.-.++-+|+++||..+++++..+......+..+.. ..+.. ..+....+....++..+++...+.+.+.-|..
T Consensus 190 d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~-~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~--- 265 (575)
T KOG1965|consen 190 DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWT-AFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRT--- 265 (575)
T ss_pred CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 99999999999999999999999998876544310000 00011 11223344555555556555555555433321
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCC-----CCchHHHHHHHHHhhHhhhhhHHHHHhhc-cc
Q 036676 263 DVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKG-----GNFAERLIERIEDFVSGLLLPLYFASSGL-KT 336 (413)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~-----~~~~~~~~~~i~~~~~~~f~plfF~~~G~-~l 336 (413)
......+.+......+.+||.+|+|++++.+..|+.+++. ++..+.-.+..-.....+...+-|.++|+ .+
T Consensus 266 ---~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f 342 (575)
T KOG1965|consen 266 ---PSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAF 342 (575)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 2344566677788888999999999999999999999873 23333333333333367888889999994 45
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CchhHHHHHHHhhchhhHHHHHHHH
Q 036676 337 DVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKI----------PARESIVLGVLMNTKGLVELIVLNI 399 (413)
Q Consensus 337 d~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~----------~~~~~~~~g~~l~~rg~~~lv~a~~ 399 (413)
|....... .........+...++|..-++-.....+. |.++-..+.|.=.-||.+++.+|.-
T Consensus 343 ~~~k~~~~-~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~ 414 (575)
T KOG1965|consen 343 DFQKHVYK-SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALG 414 (575)
T ss_pred cccceeee-chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhh
Confidence 66555542 12234445555677787776665554433 3444566666644899999887743
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.64 E-value=3.5e-13 Score=132.09 Aligned_cols=271 Identities=19% Similarity=0.291 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcC---cc---hhHHHHHHhHHHHHHHHHHHHHhhhhccc-CCCCCCchHHH
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSG---KR---AFVIAFAGISLPFVCGIGVAFVLRNTIDG-LDQVGYGPFLV 159 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 159 (413)
...+.+.+--+.+..|.+|+|+..+-+.... |+ ....++.++++|.++-.. ++...++ ..+|.
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~----~n~~~~~~~~GW~------ 130 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVA----VNLAGGGALRGWA------ 130 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHH----HhCCchhhhhhhh------
Confidence 4566788888888999999999765553221 11 235566777777654332 3321100 11232
Q ss_pred HHHHHhhhcchHHHHHHHHHhcc-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHH
Q 036676 160 FMGVALSITAFPVLARILAELKL-LTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLA 238 (413)
Q Consensus 160 ~lg~~~s~ts~~vv~~il~~~~~-~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (413)
+-++||.+.+..++...|. .+++.+..+++.+++||+.++++.++.+. ++ .+..........
T Consensus 131 ----Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt---~~-------i~~~~L~~a~~~--- 193 (423)
T PRK14853 131 ----IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT---SE-------LNLEALLLALVP--- 193 (423)
T ss_pred ----hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC---CC-------CCHHHHHHHHHH---
Confidence 3488999999999999874 58899999999999999999999988771 11 233322111111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCC-----------C
Q 036676 239 FVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGG-----------N 307 (413)
Q Consensus 239 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~-----------~ 307 (413)
+ ... |+.+|.+ .++......+ .+.+.+..+..|+|+.++++++|+++|... +
T Consensus 194 ~--~~l--------~~l~~~~-----V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~ 256 (423)
T PRK14853 194 L--ALF--------WLLVQKR-----VRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPG 256 (423)
T ss_pred H--HHH--------HHHHHcC-----CchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCC
Confidence 1 111 1111221 1223333333 346677889999999999999999998411 2
Q ss_pred chHHHHHHHHHhhHhhhhhHH-HHHhhccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCC
Q 036676 308 FAERLIERIEDFVSGLLLPLY-FASSGLKTDV-ATIRDAKSWGLLALVITTACAGKILGTFAVAVML----------KIP 375 (413)
Q Consensus 308 ~~~~~~~~i~~~~~~~f~plf-F~~~G~~ld~-~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~ 375 (413)
..++++|++++....++.|+| |+.+|.++|. +.+.+...-...+.+++..+++|.++.+..++.. +.+
T Consensus 257 p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~ 336 (423)
T PRK14853 257 LAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLT 336 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCC
Confidence 247889999999888999999 9999999986 4332211111455677778899999988777652 467
Q ss_pred chhHHHHHHHhhchh-hHHHHHHHHhhh
Q 036676 376 ARESIVLGVLMNTKG-LVELIVLNIGKE 402 (413)
Q Consensus 376 ~~~~~~~g~~l~~rg-~~~lv~a~~a~~ 402 (413)
|++-.-+|+ ++..| ++++.++.++++
T Consensus 337 ~~~l~gv~~-L~GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 337 WIDVFGVAL-LAGIGFTVSLLIGELAFG 363 (423)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhcC
Confidence 888777777 35444 567888999984
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.53 E-value=3.3e-12 Score=122.98 Aligned_cols=270 Identities=19% Similarity=0.270 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcc------hhHHHHHHhHHHHHHHHHHHHHhhhhccc-CCCCCCchHHH
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSGKR------AFVIAFAGISLPFVCGIGVAFVLRNTIDG-LDQVGYGPFLV 159 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 159 (413)
...+.+.+--+.+..|..|+|++.+-++...++ +...++.++++|.++- ..+...-++ ..+|..+
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy----~~~n~~~~~~~~GW~IP---- 122 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIY----LAFNANDPITREGWAIP---- 122 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH----hheecCCCcccCccccc----
Confidence 456667888888899999999999888643333 2234455666665432 223221111 2355543
Q ss_pred HHHHHhhhcchHHHHHHHHHhc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHH
Q 036676 160 FMGVALSITAFPVLARILAELK-LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLA 238 (413)
Q Consensus 160 ~lg~~~s~ts~~vv~~il~~~~-~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (413)
++||.+...-++.=.| +.|...+..+++.+++||+.++++.++.+. ++ .+... .......
T Consensus 123 ------~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~-------i~~~~---L~~a~~~ 183 (373)
T TIGR00773 123 ------AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---ND-------LSMAA---LLVAAVA 183 (373)
T ss_pred ------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CC-------CCHHH---HHHHHHH
Confidence 6677777777666554 367778999999999999999998887662 11 22221 1121111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCc----hHHHHH
Q 036676 239 FVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNF----AERLIE 314 (413)
Q Consensus 239 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~----~~~~~~ 314 (413)
+. .-+..+|.+ .++......+.+.+..+ .+..|+|+.++++++|+++|+..+. .|++++
T Consensus 184 ~~----------~l~~~~~~~-----v~~~~~y~~lgvllW~~--~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh 246 (373)
T TIGR00773 184 IA----------VLAVLNRCG-----VRRLGPYMLVGVILWFA--VLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEH 246 (373)
T ss_pred HH----------HHHHHHHcC-----CchhhHHHHHHHHHHHH--HHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHH
Confidence 11 111122221 12233333333333322 3799999999999999999974322 356677
Q ss_pred HHHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHH
Q 036676 315 RIEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVML----------KIPARESIVLG 383 (413)
Q Consensus 315 ~i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~~~~g 383 (413)
.+++....++.|+| |+..|.++|...+.. ......+.+++..+++|.++++..++.. +.+|++-.-++
T Consensus 247 ~L~p~v~~lilPlFAFanAGv~l~~~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~ 325 (373)
T TIGR00773 247 VLHPWVAYLILPLFAFANAGVSLQGVSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVG 325 (373)
T ss_pred HHHHHHHHHHHHHHHHHhcCeeeecCcchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 77777888899999 999999998755433 2223456677778999999998888752 45788877777
Q ss_pred HHhhchh-hHHHHHHHHhhh
Q 036676 384 VLMNTKG-LVELIVLNIGKE 402 (413)
Q Consensus 384 ~~l~~rg-~~~lv~a~~a~~ 402 (413)
+ ++..| ++++.++.++++
T Consensus 326 ~-L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 326 V-LCGIGFTMSIFIASLAFG 344 (373)
T ss_pred H-HHHHHHHHHHHHHHHhcC
Confidence 7 35444 567788888884
No 20
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.3e-11 Score=122.92 Aligned_cols=352 Identities=13% Similarity=0.133 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccC--CChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHH
Q 036676 27 PLLIVQTTLILVVSRFLAFLFRPLR--QPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLV 104 (413)
Q Consensus 27 ~~~~~~~~~~l~~~~l~~~l~~r~~--iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~ 104 (413)
|+.+....++.-++.+.=.+.+|++ +|.-...|+.|+++|-...+.... + -+.-+ .+ .+--.-+--|++.+
T Consensus 41 p~vi~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~--~-~~~L~-s~---vFFlyLLPPIvlDA 113 (670)
T KOG1966|consen 41 PYVITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATI--A-PFFLE-SD---VFFLYLLPPIVLDA 113 (670)
T ss_pred chhhHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcc--c-ccccc-cc---chhhhhcCHHHhcc
Confidence 3434444445555566555666654 899999999999999654332210 0 00000 11 11112233488999
Q ss_pred hhhcChHHHHhcCcchhHHHHHHhHHHHH-HHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhccc
Q 036676 105 GLELDLSSIRRSGKRAFVIAFAGISLPFV-CGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLL 183 (413)
Q Consensus 105 Gle~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~ 183 (413)
|.-+.-+.+-+|...++..+.+|.+.... ++... +.+......+.+.+. ..-++.|..+|+.||..+..+.+|.+ .
T Consensus 114 GYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL-~~i~~~glf~~~~gl-ld~LlFgSLIsAVDPVAVLaVFEEih-V 190 (670)
T KOG1966|consen 114 GYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASL-YAISLSGLFGMSIGL-LDILLFGSLISAVDPVAVLAVFEEIH-V 190 (670)
T ss_pred cccCccHHHHhccchhhhHHHHHHHHHHHHHHHHH-HHHHHhhhcCCCchH-HHHHHHHHHHHhcCchhhhhhhhhhc-c
Confidence 99999999999999999999999888543 33322 222211111212333 67899999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 036676 184 TTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHD 263 (413)
Q Consensus 184 ~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~ 263 (413)
|+-+=-++-+++.+||.+.++++-....+...++..-.+ .........+..+.+.+++++.+.+.+.....|.++ +
T Consensus 191 Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~-~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~--~- 266 (670)
T KOG1966|consen 191 NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTT-IDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTK--H- 266 (670)
T ss_pred ccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeE-eeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhc--c-
Confidence 998888999999999999999999888776553110000 011111111111122233444455555555555553 2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCC--CCchHH---HHHHHHHhhHhhhhhHHHHHhhccccc
Q 036676 264 VVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKG--GNFAER---LIERIEDFVSGLLLPLYFASSGLKTDV 338 (413)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~--~~~~~~---~~~~i~~~~~~~f~plfF~~~G~~ld~ 338 (413)
.+-....+.+....+++..+|.+|+|++++..+.|+++++. ....++ -.+..-+.......++-|++.|.+.--
T Consensus 267 -vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~ 345 (670)
T KOG1966|consen 267 -VRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVS 345 (670)
T ss_pred -eeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcC
Confidence 12244567788889999999999999999999999999862 122222 233343444667788899999988754
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCchhHHHHHHHhhchhhHHHHH
Q 036676 339 ATIRDAKSWGLLALVITTACAGKILGTFAVAVML------KIPARESIVLGVLMNTKGLVELIV 396 (413)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~------~~~~~~~~~~g~~l~~rg~~~lv~ 396 (413)
..-.+ ++..+..-++.-.+.|.+++..-+++. +.+..+.+.++.+ +-||.++..+
T Consensus 346 ~~h~w--d~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~L 406 (670)
T KOG1966|consen 346 SNHHW--DFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGL 406 (670)
T ss_pred Cccee--ehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeE
Confidence 33222 344444444445566999888777765 3577788888887 8888776543
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.14 E-value=1.4e-08 Score=99.63 Aligned_cols=269 Identities=20% Similarity=0.280 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcc------hhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHH
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSGKR------AFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVF 160 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (413)
..-+.+.+--+.+..|..|+|+..+-+....++ +...++.++++|.++- ..+....+...+|..+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY----~~~n~~~~~~~GWgIP----- 137 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIY----FFLNADTPSQHGFGIP----- 137 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHH----hheecCCCccCccccc-----
Confidence 456678888888999999999998887643332 2234556666665432 2232222123355443
Q ss_pred HHHHhhhcchHHHHHHHHHhc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH
Q 036676 161 MGVALSITAFPVLARILAELK-LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAF 239 (413)
Q Consensus 161 lg~~~s~ts~~vv~~il~~~~-~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
++||.+...-++.=.| ..+...+..+++.+++||+.++++.++.+. .+ .+.. +.......+
T Consensus 138 -----mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~-------i~~~---~L~~a~~~~ 199 (438)
T PRK14856 138 -----MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TN-------LKFA---WLLGALGVV 199 (438)
T ss_pred -----cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC-------CcHH---HHHHHHHHH
Confidence 6777777777765554 357788999999999999999998887662 11 2222 111221111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCc-----------
Q 036676 240 VIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNF----------- 308 (413)
Q Consensus 240 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~----------- 308 (413)
. .-.++ +|.+ .+.......+.+++ .+.-..-|+|+-++..+.|+++|...+.
T Consensus 200 ~------~l~~l----n~~~-----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~ 262 (438)
T PRK14856 200 L------VLAVL----NRLN-----VRSLIPYLLLGVLL--WFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELG 262 (438)
T ss_pred H------HHHHH----HHcC-----CccccHHHHHHHHH--HHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhh
Confidence 1 11111 2221 11223333344433 3444566999999999999999852211
Q ss_pred ---------------------------------hHHHHHHHHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHH
Q 036676 309 ---------------------------------AERLIERIEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVI 354 (413)
Q Consensus 309 ---------------------------------~~~~~~~i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~ 354 (413)
-+++++.+++....+.+|+| |...|..++.+.... .-.....+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~ 340 (438)
T PRK14856 263 KRYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVI 340 (438)
T ss_pred hhhhccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHH
Confidence 14455666666777899999 899999998543221 112344466
Q ss_pred HHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhhchh-hHHHHHHHHhhh
Q 036676 355 TTACAGKILGTFAVAVML----------KIPARESIVLGVLMNTKG-LVELIVLNIGKE 402 (413)
Q Consensus 355 ~~~~~~k~~~~~~~~~~~----------~~~~~~~~~~g~~l~~rg-~~~lv~a~~a~~ 402 (413)
+..+++|.++++..++.. +.+|++-.-+|+ ++..| ++++.++.++++
T Consensus 341 ~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 341 LGLCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 667889999988877652 457777777777 34444 466788888884
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.12 E-value=2.1e-08 Score=96.98 Aligned_cols=270 Identities=18% Similarity=0.245 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcc------hhHHHHHHhHHHHHHHHHHHHHhhhhccc-CCCCCCchHHH
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSGKR------AFVIAFAGISLPFVCGIGVAFVLRNTIDG-LDQVGYGPFLV 159 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 159 (413)
..-+.+.+--+.+..|..|+|+..+-++...++ ....++.++++|.++- ..+....+. ..+|..+
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy----~~~n~g~~~~~~GWgIP---- 129 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIY----AAFNYNNPETLRGWAIP---- 129 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH----heeecCCCcccCccccc----
Confidence 455667888888899999999998887643332 2234555666665432 222221111 2356543
Q ss_pred HHHHHhhhcchHHHHHHHHHhc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHH
Q 036676 160 FMGVALSITAFPVLARILAELK-LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLA 238 (413)
Q Consensus 160 ~lg~~~s~ts~~vv~~il~~~~-~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (413)
.+||.+...-++.=.| +.+...+..+++.+++||+.++++.++.+. ++ .+... .......
T Consensus 130 ------mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~-------i~~~~---L~~a~~~ 190 (389)
T PRK09560 130 ------AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SD-------LSLPA---LALAAIA 190 (389)
T ss_pred ------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC-------CCHHH---HHHHHHH
Confidence 6778777777766554 367778999999999999999998887662 11 22222 1121111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCc------hHHH
Q 036676 239 FVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNF------AERL 312 (413)
Q Consensus 239 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~------~~~~ 312 (413)
+.+ . +..+|.+ .++......+.++. .+.-..-|+|+.++..+.|+++|...+. -+|+
T Consensus 191 ~~~-l---------~~ln~~~-----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rl 253 (389)
T PRK09560 191 IAV-L---------FLLNRLG-----VTKLTPYLIVGAIL--WFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHL 253 (389)
T ss_pred HHH-H---------HHHHHcC-----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHH
Confidence 111 0 1112221 12233333344433 4444566999999999999999863211 3678
Q ss_pred HHHHHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHH
Q 036676 313 IERIEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVML----------KIPARESIV 381 (413)
Q Consensus 313 ~~~i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~~~ 381 (413)
++++++....+.+|+| |...|..++-..+.+ ..-.....+.+..+++|.++++..++.. +.+|++-.-
T Consensus 254 eh~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~g 332 (389)
T PRK09560 254 EHALHPWVAFAILPLFAFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYG 332 (389)
T ss_pred HHHhhhhhhhhhHHHHHhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 8899998777889999 899999995322222 1112344566667889999988877652 457777777
Q ss_pred HHHHhhchh-hHHHHHHHHhhh
Q 036676 382 LGVLMNTKG-LVELIVLNIGKE 402 (413)
Q Consensus 382 ~g~~l~~rg-~~~lv~a~~a~~ 402 (413)
+|+. +..| ++++.++.++++
T Consensus 333 v~~L-~GIGFTmSLFIa~LAF~ 353 (389)
T PRK09560 333 VSVL-CGIGFTMSLFIGSLAFG 353 (389)
T ss_pred HHHH-HHHHHHHHHHHHHhhcC
Confidence 7773 4444 566788888884
No 23
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.10 E-value=3.2e-08 Score=95.60 Aligned_cols=270 Identities=20% Similarity=0.273 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcc------hhHHHHHHhHHHHHHHHHHHHHhhhhccc-CCCCCCchHHH
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSGKR------AFVIAFAGISLPFVCGIGVAFVLRNTIDG-LDQVGYGPFLV 159 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 159 (413)
+.-+.+.+--+.+..|..|+|+..+-++...++ ....++.++++|.++- ..+...-+. ..+|..+
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy----~~~n~~~~~~~~GWaIP---- 129 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIY----LLFNYADPVTREGWAIP---- 129 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHH----hheecCCCcccCccccc----
Confidence 356667888888899999999999888643332 2234555666665432 223221111 2355443
Q ss_pred HHHHHhhhcchHHHHHHHHHhc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHH
Q 036676 160 FMGVALSITAFPVLARILAELK-LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLA 238 (413)
Q Consensus 160 ~lg~~~s~ts~~vv~~il~~~~-~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (413)
++||.+...-++.=.| +.+...+..+++.+++||+.++++.++.+. ++ .+.. +.......
T Consensus 130 ------~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~-------i~~~---~L~~a~~~ 190 (388)
T PRK09561 130 ------AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SD-------LSMV---SLGVAAVA 190 (388)
T ss_pred ------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC-------ccHH---HHHHHHHH
Confidence 6777777777765554 367778999999999999999998887662 11 1221 11111111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCC----chHHHHH
Q 036676 239 FVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGN----FAERLIE 314 (413)
Q Consensus 239 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~----~~~~~~~ 314 (413)
+. .. +..+|.+ .++......+.+++ .+.-..-|+|+.++..+.|+++|...+ --+|+++
T Consensus 191 ~~--~l--------~~ln~~~-----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh 253 (388)
T PRK09561 191 IA--VL--------AVLNLCG-----VRRTSVYILVGVVL--WVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEH 253 (388)
T ss_pred HH--HH--------HHHHHcC-----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHH
Confidence 11 11 1112221 12233333344333 444556699999999999999996322 1367888
Q ss_pred HHHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHH
Q 036676 315 RIEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVML----------KIPARESIVLG 383 (413)
Q Consensus 315 ~i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~~~~g 383 (413)
++++....+.+|+| |...|..++-..+.. ..-.....+.+..+++|.++++..++.. +.+|++-.-+|
T Consensus 254 ~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~ 332 (388)
T PRK09561 254 GLHPWVAFLILPLFAFANAGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVG 332 (388)
T ss_pred HhhhhhhheeHHHHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 99999888899999 899999984222211 1112334466667889999988877652 45778877777
Q ss_pred HHhhchh-hHHHHHHHHhhh
Q 036676 384 VLMNTKG-LVELIVLNIGKE 402 (413)
Q Consensus 384 ~~l~~rg-~~~lv~a~~a~~ 402 (413)
. ++..| ++++.++.++++
T Consensus 333 ~-L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 333 V-LCGIGFTMSIFIASLAFG 351 (388)
T ss_pred H-HHHHHHHHHHHHHHHhcC
Confidence 7 34444 466788888885
No 24
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.08 E-value=4.2e-08 Score=94.44 Aligned_cols=271 Identities=18% Similarity=0.259 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcCc---c---hhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHH
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSGK---R---AFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVF 160 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (413)
..-+.+.+--+.+..|..|+|++.+-.....+ + ....++.++++|.++-.. ++...+...+|..+
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~----~n~~~~~~~GW~IP----- 125 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS----INHDIKVINGWAIP----- 125 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh----hccCCcccCccccc-----
Confidence 45666788888889999999999887754332 2 234455666666544322 32221113355543
Q ss_pred HHHHhhhcchHHHHHHHHHhc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH
Q 036676 161 MGVALSITAFPVLARILAELK-LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAF 239 (413)
Q Consensus 161 lg~~~s~ts~~vv~~il~~~~-~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
++||.+....++.=.| +.+...+..+++.+++||+.++++.++.+. ++ .+... .......+
T Consensus 126 -----~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~-------i~~~~---L~~A~~~~ 187 (383)
T PRK14854 126 -----SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KS-------LSLLS---LSLGTLFI 187 (383)
T ss_pred -----cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC-------ccHHH---HHHHHHHH
Confidence 6677777777665554 368888999999999999999998887662 11 12211 11111111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCC----chHHHHHH
Q 036676 240 VIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGN----FAERLIER 315 (413)
Q Consensus 240 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~----~~~~~~~~ 315 (413)
. . -..+ .|+.+ .++......+.+ ...+.-..-|+|+.++..+.|+++|...+ -.+|++++
T Consensus 188 ~--~----l~~~---nr~~~-----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~ 251 (383)
T PRK14854 188 L--A----MIIC---NRIFK-----INRSSVYVVLGF--FAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDS 251 (383)
T ss_pred H--H----HHHH---HHhcC-----CceehHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 0 0 0111 22211 112223333333 33444556799999999999999996321 13678888
Q ss_pred HHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHH
Q 036676 316 IEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVML----------KIPARESIVLGV 384 (413)
Q Consensus 316 i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~~~~g~ 384 (413)
+++....+.+|+| |...|.+++-..... ..-.....+.+..+++|.++++..++.. +.+|++-.-+++
T Consensus 252 L~p~v~~~IlPlFA~aNAGV~l~~~~~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~ 330 (383)
T PRK14854 252 LHPWIIYFILPVFAFANAGISFSGISFSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL 330 (383)
T ss_pred hhchHHHhhHHHHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 8888888999999 899999994322221 1112344566667889999888877652 457788777777
Q ss_pred Hhhchh-hHHHHHHHHhhh
Q 036676 385 LMNTKG-LVELIVLNIGKE 402 (413)
Q Consensus 385 ~l~~rg-~~~lv~a~~a~~ 402 (413)
++..| ++++.++.++++
T Consensus 331 -L~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 331 -LCGIGFTMSLFIGVLAFN 348 (383)
T ss_pred -HHHHHHHHHHHHHHhhCC
Confidence 35444 567888888885
No 25
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.05 E-value=5.5e-08 Score=95.12 Aligned_cols=266 Identities=20% Similarity=0.240 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcc------hhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHH
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSGKR------AFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVF 160 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (413)
..-+.+.+--+.+..|..|+|+..+-+....++ ....++.++++|.++- ..+...-+...+|..+
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy----~~~n~~~~~~~GWgIP----- 132 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALY----TALNAGGPGASGWGVP----- 132 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHH----heeecCCCccCccccc-----
Confidence 455667888888899999999999888643322 2234555666665432 2232221112355442
Q ss_pred HHHHhhhcchHHHHHHHHHhc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH
Q 036676 161 MGVALSITAFPVLARILAELK-LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAF 239 (413)
Q Consensus 161 lg~~~s~ts~~vv~~il~~~~-~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
++||.+....++.=.| +.+...+..+++.+++||+.++++.++.+. ++ .+.. +.......+
T Consensus 133 -----mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~-------i~~~---~L~~a~~~~ 194 (423)
T PRK14855 133 -----MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SG-------LNLL---ALLLAALTW 194 (423)
T ss_pred -----cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CC-------CCHH---HHHHHHHHH
Confidence 6778777777766664 356678999999999999999998887662 11 2222 111211111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCC-CCc----------
Q 036676 240 VIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKG-GNF---------- 308 (413)
Q Consensus 240 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~-~~~---------- 308 (413)
. .- +..+|.+ .+.......+.++ ..+.-..-|+|+.++..+.|+++|.. .+.
T Consensus 195 ~------~l----~~ln~~~-----v~~~~~Y~~~G~~--lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~ 257 (423)
T PRK14855 195 A------LA----LLAGRLG-----VTSLKIYAVLGAL--LWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDA 257 (423)
T ss_pred H------HH----HHHHHcC-----CccccHHHHHHHH--HHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHH
Confidence 1 11 1112221 1123333334433 34445566999999999999999863 110
Q ss_pred --------------------------hHHHHHHHHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 036676 309 --------------------------AERLIERIEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVITTACAGK 361 (413)
Q Consensus 309 --------------------------~~~~~~~i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k 361 (413)
.+|+++.+++....+.+|+| |...|.+++-+. .. . ..+.+.+..+++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~--p--v~lGI~~GLvvGK 332 (423)
T PRK14855 258 AAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG--T--VSLGVFLGLLLGK 332 (423)
T ss_pred hhcccchhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC--c--HHHHHHHHHHhcc
Confidence 24566677777777899999 899999995444 22 1 2344566677899
Q ss_pred HHHHHHHHHHh----------CCCchhHHHHHHHhhchh-hHHHHHHHHhhh
Q 036676 362 ILGTFAVAVML----------KIPARESIVLGVLMNTKG-LVELIVLNIGKE 402 (413)
Q Consensus 362 ~~~~~~~~~~~----------~~~~~~~~~~g~~l~~rg-~~~lv~a~~a~~ 402 (413)
.++++..++.. +.+|++-.-+|+ ++..| ++++.++.++++
T Consensus 333 ~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 333 PLGVVGGAWLAVRLGLASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFA 383 (423)
T ss_pred hHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCC
Confidence 99988877652 467888777777 35444 566788888884
No 26
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.91 E-value=1.3e-08 Score=98.21 Aligned_cols=272 Identities=21% Similarity=0.325 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcChHHHHh---cCcch---hHHHHHHhHHHHHHHHHHHHHhhhhcc-cCCCCCCchHH
Q 036676 86 TPTLESVASIGLLFFLFLVGLELDLSSIRR---SGKRA---FVIAFAGISLPFVCGIGVAFVLRNTID-GLDQVGYGPFL 158 (413)
Q Consensus 86 ~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 158 (413)
.+.-+.+.+--+.+..|.+|+|+..+-... +.|+. ...++.++++|..+ +..++...+ ...+|..+
T Consensus 53 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI----yl~~n~~~~~~~~GW~IP--- 125 (378)
T PF06965_consen 53 LSLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI----YLAFNAGGPEAAHGWAIP--- 125 (378)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH----HGGG--SSTTHHHHTSSS---
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH----HheeecCCCCcCceEEec---
Confidence 445667888888889999999999887753 23322 23455666666543 222332211 01234432
Q ss_pred HHHHHHhhhcchHHHHHHHHHhc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHH
Q 036676 159 VFMGVALSITAFPVLARILAELK-LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGL 237 (413)
Q Consensus 159 l~lg~~~s~ts~~vv~~il~~~~-~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (413)
++||.+....++.=.| ..+...+..+++.+++||+.++++.++.+. ++ .+.. +......
T Consensus 126 -------~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~-------i~~~---~L~~a~~ 185 (378)
T PF06965_consen 126 -------MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DG-------ISLL---WLLLAAA 185 (378)
T ss_dssp -------S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------------HH---HHHHHHH
T ss_pred -------ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CC-------CCHH---HHHHHHH
Confidence 7788888888776554 356778899999999999999998887763 11 1221 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCc--------h
Q 036676 238 AFVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNF--------A 309 (413)
Q Consensus 238 ~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~--------~ 309 (413)
.+. .. +..+|.+ . ++......+. +..-+.-..-|+|+.++..+.|+++|..++. -
T Consensus 186 ~~~--~l--------~~l~r~~---v--~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl 248 (378)
T PF06965_consen 186 ALL--LL--------FVLNRLG---V--RSLWPYLLLG--ILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPL 248 (378)
T ss_dssp HHH--HH--------HHHHHTT--------THHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HH
T ss_pred HHH--HH--------HHHHHCC---C--ceehHHHHHH--HHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHH
Confidence 111 10 1122221 0 1122333333 3345556677999999999999999974433 2
Q ss_pred HHHHHHHHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchh
Q 036676 310 ERLIERIEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVML----------KIPARE 378 (413)
Q Consensus 310 ~~~~~~i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~ 378 (413)
+|+++.+++....+.+|+| |...|.+++-..+.+. .-.....+.+..+++|.++....++.. +.+|++
T Consensus 249 ~rle~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~ 327 (378)
T PF06965_consen 249 ERLEHALHPWVAFVILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRH 327 (378)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGG
T ss_pred HHHHHHhhhhhhhhhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHH
Confidence 5788888888777889999 8999999987665432 222334466667889999988776542 457777
Q ss_pred HHHHHHHhhchh-hHHHHHHHHhhhc
Q 036676 379 SIVLGVLMNTKG-LVELIVLNIGKEK 403 (413)
Q Consensus 379 ~~~~g~~l~~rg-~~~lv~a~~a~~~ 403 (413)
-.-+|+. +..| ++++.++.++++.
T Consensus 328 l~gv~~L-aGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 328 LYGVGLL-AGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp GTTHHHH-TT--HHHHHHHHHHHSTT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 7777773 4444 5678889999886
No 27
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.86 E-value=1e-06 Score=82.22 Aligned_cols=266 Identities=19% Similarity=0.260 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcChHHHHhcC---cch---hHHHHHHhHHHHHHHHHHHHHhhhhcc-cCCCCCCchHHHHH
Q 036676 89 LESVASIGLLFFLFLVGLELDLSSIRRSG---KRA---FVIAFAGISLPFVCGIGVAFVLRNTID-GLDQVGYGPFLVFM 161 (413)
Q Consensus 89 ~~~l~~lgl~~l~F~~Gle~~~~~l~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l 161 (413)
...+.+--..+..+..|+|++.+.+..+. |+. ...++.+++.|.. ++..+...-+ ...+|..
T Consensus 63 ~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl----iy~~~n~~~p~~~~GWaI------- 131 (390)
T COG3004 63 LLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL----IYLALNAGDPATLEGWAI------- 131 (390)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh----HhheeecCChhhhcCcCc-------
Confidence 44455555666778899999999886433 222 2334455555543 2333333211 1223433
Q ss_pred HHHhhhcchHHHHHHHHHhc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHH
Q 036676 162 GVALSITAFPVLARILAELK-LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFV 240 (413)
Q Consensus 162 g~~~s~ts~~vv~~il~~~~-~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (413)
=++||.+...-+++=++ +.|+...-.+++.+++||+-++++.++.+. .+ .+... .....+..
T Consensus 132 ---P~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~-------Ls~~a---l~~a~~~i- 194 (390)
T COG3004 132 ---PMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TD-------LSMAA---LGIAALAI- 194 (390)
T ss_pred ---ccHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CC-------ccHHH---HHHHHHHH-
Confidence 26788887777776664 478889999999999999999988876662 11 22221 11111111
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCc----hHHHHHHH
Q 036676 241 IFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNF----AERLIERI 316 (413)
Q Consensus 241 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~----~~~~~~~i 316 (413)
... ..++|. .- +.....+...+++..+. ..-|+|..++..+.|+.+|-..+. -|++++.+
T Consensus 195 -~vL----~~lN~~---~v------~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L 258 (390)
T COG3004 195 -AVL----AVLNRL---GV------RRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHAL 258 (390)
T ss_pred -HHH----HHHHHh---Cc------hhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHh
Confidence 110 112221 11 11223334444444433 455999999999999999853332 36777777
Q ss_pred HHhhHhhhhhHH-HHHhhcccc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHH
Q 036676 317 EDFVSGLLLPLY-FASSGLKTD---VATIRDAKSWGLLALVITTACAGKILGTFAVAVML----------KIPARESIVL 382 (413)
Q Consensus 317 ~~~~~~~f~plf-F~~~G~~ld---~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~~~~ 382 (413)
.+....+..|+| |...|.+++ .+.+.+ . +.+.+.+-.+++|.++++..++.. +.+|++-..+
T Consensus 259 ~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s--~--l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v 334 (390)
T COG3004 259 HPWVAFFILPLFAFANAGVSLQGVSLSGLTS--P--LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGV 334 (390)
T ss_pred hhhHHHHHHHHHHHccCCccccccccccccc--c--hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHH
Confidence 777778899999 999999987 555554 2 334466667889999988877652 5678887777
Q ss_pred HHHhhchh-hHHHHHHHHhhhc
Q 036676 383 GVLMNTKG-LVELIVLNIGKEK 403 (413)
Q Consensus 383 g~~l~~rg-~~~lv~a~~a~~~ 403 (413)
+. ++..| +.++.++.++++.
T Consensus 335 ~i-LcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 335 SI-LCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred HH-HHhhhHHHHHHHHHHhcCC
Confidence 77 45555 4667888888765
No 28
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.22 E-value=0.004 Score=61.58 Aligned_cols=287 Identities=21% Similarity=0.177 Sum_probs=147.4
Q ss_pred CCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHH
Q 036676 51 RQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISL 130 (413)
Q Consensus 51 ~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~ 130 (413)
++|+++-.++.|+++.+ +|.+++ +.+.+..+.+.+..+-+-++..=++.|+++++|.++|.+.. +....+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~~-------p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLIDS-------PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcCC-------CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence 47889999999999987 454421 22445666777777666666666789999999998876644 333334
Q ss_pred HHHHHHHHHHHh-hhhcccCCCCCCchHHHHHHHHhhhcchHH--HHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 036676 131 PFVCGIGVAFVL-RNTIDGLDQVGYGPFLVFMGVALSITAFPV--LARILAELKLLTTRVGETAMSAAAFNDVAAWILLA 207 (413)
Q Consensus 131 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~lg~~~s~ts~~v--v~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~ 207 (413)
..+++..+.+++ +... ++ +.--.+.+++.|-.+= =...++|. .+.+ .+..-.....|++..-+.+.
T Consensus 94 g~viG~~va~~l~~~~l-~~-------~~wk~ag~l~gsyiGGs~N~~Av~~a--l~~~-~~~~~a~~aaDnv~~~~~~~ 162 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFL-GP-------EGWKIAGMLAGSYIGGSVNFVAVAEA--LGVS-DSLFAAALAADNVVMALWFA 162 (378)
T ss_pred HHHHHHHHHHHHHhhcc-cc-------hHHHHHHHHHhcccCchhHHHHHHHH--HCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 444454444433 3221 11 1222222333321111 11112221 1222 35566666777777777777
Q ss_pred HHHHHHhcCC----CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHH
Q 036676 208 LAVAIAGDGT----ASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFM 283 (413)
Q Consensus 208 i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (413)
+...+..... ....+ .+..+.... .. ..-.+.. ++++. .......+++.+....+
T Consensus 163 ~l~~l~~~~~~~~~~~~~~-~~~~~~~~~---~~--------------~~~~~~~--~~~~~-~~~l~~~la~a~~v~~~ 221 (378)
T PF05684_consen 163 FLLALPPFARKFDRWTKAD-TSSIEALEE---EI--------------EAEEAEW--ARKPI-SQDLAFLLAVAFAVVAL 221 (378)
T ss_pred HHHHHhhhhHHhhhccCCC-ccccchhhh---hh--------------hhhhhcc--ccCCc-HhHHHHHHHHHHHHHHH
Confidence 6665543110 00000 000000000 00 0000000 00111 12222333333333333
Q ss_pred HH----Hh-----Ch----hhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHH
Q 036676 284 TD----LI-----GI----HSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLL 350 (413)
Q Consensus 284 a~----~~-----g~----s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~ 350 (413)
++ .+ +. -.++-....|+..+- ++..+++ +.-+++ ..+++-+||..+|++.|+..+.+.+ . .
T Consensus 222 s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~ap-~--~ 295 (378)
T PF05684_consen 222 SHALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDAP-S--L 295 (378)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHhH-H--H
Confidence 32 22 11 123344455555543 4444443 444555 5677889999999999999988732 2 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 036676 351 ALVITTACAGKILGTFAVAVMLKIPARESIVLGVL 385 (413)
Q Consensus 351 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~ 385 (413)
+.+..+.+....+..+..+|.+|.|.++-...+-.
T Consensus 296 ~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~A 330 (378)
T PF05684_consen 296 FLFGFIILAIHLLLMLILGKLFKIDLFELLVASNA 330 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhhc
Confidence 23445556778888888999999999887777653
No 29
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.92 E-value=0.025 Score=54.91 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=83.7
Q ss_pred hcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchH-HHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHH
Q 036676 47 FRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTP-TLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAF 125 (413)
Q Consensus 47 ~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~-~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~ 125 (413)
.++.++|..+--++.|+++|+......+. .. .+..+ .-+.+.++|+++ .|.+++++++-+.+.+.+....
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~--~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~ 96 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EK--KRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADT 96 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hc--cchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHH
Confidence 35678999999999999999853211111 00 01111 234666777665 6889999999999988877766
Q ss_pred HHhHHHHHHHHHHH-HHhhhhcccCCCCCCchHHHHHHHHhhh---cchHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 036676 126 AGISLPFVCGIGVA-FVLRNTIDGLDQVGYGPFLVFMGVALSI---TAFPVLARILAELKLLTTRVGETAMSAAAFNDVA 201 (413)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~lg~~~s~---ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~ 201 (413)
..+..++..+..+. ..++.+- ..+.++++-.+. ++...+.+.++. +++......+...+=+.+
T Consensus 97 ~~v~~~~~~~~~~g~k~l~l~~---------~~~~Lia~GtsICGaSAi~A~a~~i~A----~~~~~a~ava~V~lfgt~ 163 (335)
T TIGR00698 97 LILTSTFFLTVFLGSSRLKLDK---------QMSILLGAGSSICGAAAVAAIEPVIKA----EKEKVSVAIAIVVIFGTT 163 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCCh---------hHHHHHHcchhHHHHHHHHHhccccCC----CccceeeeehHHHHHHHH
Confidence 66666666655554 4555432 456666653333 333333344332 333344455555555556
Q ss_pred HHHHHHHHHHH
Q 036676 202 AWILLALAVAI 212 (413)
Q Consensus 202 ~~~~~~i~~~~ 212 (413)
+.+++..+...
T Consensus 164 am~l~P~l~~~ 174 (335)
T TIGR00698 164 GIFLYPSIYHY 174 (335)
T ss_pred HHHHHHHHHHH
Confidence 66656555443
No 30
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.85 E-value=0.0063 Score=59.07 Aligned_cols=95 Identities=8% Similarity=0.125 Sum_probs=62.5
Q ss_pred ChhhhHHHHHHHhhcCCCCC---chHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 036676 288 GIHSIFGAFVFGLTIPKGGN---FAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILG 364 (413)
Q Consensus 288 g~s~~lgaf~aGl~l~~~~~---~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~ 364 (413)
.++-...+++.|++++|..+ ..+-..+.++.+ .++..-+|-.+.=|++.+-++.+. .....+++.+-.++--..+
T Consensus 247 ~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~i-g~vsL~lflamALmSlkLweL~~l-~lpl~viL~vQ~i~m~lfa 324 (404)
T COG0786 247 ALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVI-GNVSLSLFLAMALMSLKLWELADL-ALPLLVILAVQTIVMALFA 324 (404)
T ss_pred cccHHHHHHHHHHHHHhHHHHhccccccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 36778999999999998321 122233445555 566777888888889988777762 3333333333334445666
Q ss_pred HHHHHHHhCCCchhHHHHHH
Q 036676 365 TFAVAVMLKIPARESIVLGV 384 (413)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~g~ 384 (413)
.+...|..|.|+-.+...+.
T Consensus 325 ~fvtfr~mG~~YdAaV~~~G 344 (404)
T COG0786 325 IFVTFRLMGKNYDAAVLAAG 344 (404)
T ss_pred HHHHHHHhCcchhHHHHhcc
Confidence 77778888988887776444
No 31
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.83 E-value=0.006 Score=58.54 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=91.5
Q ss_pred HHHHHHHhh-cccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHH-HHHHHHHHHHHHHHHHhhhcChHHHHhc
Q 036676 39 VSRFLAFLF-RPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPT-LESVASIGLLFFLFLVGLELDLSSIRRS 116 (413)
Q Consensus 39 ~~~l~~~l~-~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~-~~~l~~lgl~~l~F~~Gle~~~~~l~~~ 116 (413)
+++..+..- +..+++..+--++.|+++++...+.-+.. ++..+. -+.+.+.|+++ .|.+++++++.+.
T Consensus 12 ~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~------~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~ 81 (305)
T PF03601_consen 12 LAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARF------KPGIKFSSKKLLRLGIVL----LGFRLSFSDILAL 81 (305)
T ss_pred HHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHH------HhHHHHHHHHHHHHHHHH----HCccccHHHHHHh
Confidence 334433332 45789999999999999997333332211 111222 24677777765 5889999999999
Q ss_pred CcchhHHHHHHhHHHHHHHHHHH-HHhhhhcccCCCCCCchHHHHHHHHhhhc---chHHHHHHHHHhcccCchhHHHHH
Q 036676 117 GKRAFVIAFAGISLPFVCGIGVA-FVLRNTIDGLDQVGYGPFLVFMGVALSIT---AFPVLARILAELKLLTTRVGETAM 192 (413)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~lg~~~s~t---s~~vv~~il~~~~~~~~~~~~~~l 192 (413)
+.+........+..++.++..+. ..++.+- ..+.++++-.+.+ +...+.+.++. +++......
T Consensus 82 G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~---------~~~~Lia~GtsICG~SAi~A~a~~i~a----~~~~~a~av 148 (305)
T PF03601_consen 82 GWKGLLIIIIVVILTFLLTYWLGRRLFGLDR---------KLAILIAAGTSICGASAIAATAPVIKA----KEEDVAYAV 148 (305)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHhhcccchHHHHHHHcccccC----CCCceeeee
Confidence 99888888877777777776666 6666532 5667777644443 33333344333 333344445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036676 193 SAAAFNDVAAWILLALAVA 211 (413)
Q Consensus 193 ~~a~~~D~~~~~~~~i~~~ 211 (413)
+...+=+.++.+++..+..
T Consensus 149 a~V~lfg~vam~~~P~l~~ 167 (305)
T PF03601_consen 149 ATVFLFGTVAMFLYPLLGH 167 (305)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5555555666666665543
No 32
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.77 E-value=0.042 Score=54.72 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=64.0
Q ss_pred hChhhhHHHHHHHhhcCCCCC---chHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHH-
Q 036676 287 IGIHSIFGAFVFGLTIPKGGN---FAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKI- 362 (413)
Q Consensus 287 ~g~s~~lgaf~aGl~l~~~~~---~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~- 362 (413)
..++...+|++.|++++|..+ ..+...+.++.+ .+...-+|-+..=|++++..+.+ .+...++++++.++.-.
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I-~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l 319 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVI-GNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMAL 319 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHH-HHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 347889999999999998321 111112233333 45556677778888899988877 55555555555555544
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHhhch
Q 036676 363 LGTFAVAVMLKIPARESIVLGVLMNTK 389 (413)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~g~~l~~r 389 (413)
...++..|..+.| +|+..++.+.+..
T Consensus 320 ~~~fv~fr~mg~~-ydaaV~~ag~~G~ 345 (398)
T TIGR00210 320 YAIFVTFRLMGKD-YDAAVLCAGHCGF 345 (398)
T ss_pred HHHHHhHHhccch-HHHHHHhcccccc
Confidence 4456777778888 8888766554433
No 33
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.76 E-value=0.042 Score=54.28 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=56.5
Q ss_pred hChhhhHHHHHHHhhcCCCC------CchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHH-HH
Q 036676 287 IGIHSIFGAFVFGLTIPKGG------NFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTA-CA 359 (413)
Q Consensus 287 ~g~s~~lgaf~aGl~l~~~~------~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~-~~ 359 (413)
+.++...+|++.|++++|.. +.+++..+++... ..-+|-+..=+++++..+.+ .+...++++++. ++
T Consensus 245 ~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~----sL~~fl~~almsl~l~~l~~--~a~Plliil~~q~i~ 318 (368)
T PF03616_consen 245 LTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGI----SLDLFLAMALMSLKLWVLAD--YALPLLIILAVQTIL 318 (368)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHH----HHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHH
Confidence 34577899999999998721 2233444444444 44455566667788877877 333333333333 33
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHhh
Q 036676 360 GKILGTFAVAVMLKIPARESIVLGVLMN 387 (413)
Q Consensus 360 ~k~~~~~~~~~~~~~~~~~~~~~g~~l~ 387 (413)
.-....+...|..|.|+ |+..++.+.+
T Consensus 319 ~~~f~~fv~fr~~gkdy-daavm~~G~~ 345 (368)
T PF03616_consen 319 MVLFAYFVTFRVMGKDY-DAAVMSAGFC 345 (368)
T ss_pred HHHHHHHHhhhhhCCCh-hHHHHhhhhh
Confidence 34555677778888886 5555544433
No 34
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=97.43 E-value=0.14 Score=49.94 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhhcChHHHHhcCcchhHH---HHHHhHHHHHHHHHHHHHh-hhhcccCCCCCCchHHHHHHHHhhhcc
Q 036676 94 SIGLLFFLFLVGLELDLSSIRRSGKRAFVI---AFAGISLPFVCGIGVAFVL-RNTIDGLDQVGYGPFLVFMGVALSITA 169 (413)
Q Consensus 94 ~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~lg~~~s~ts 169 (413)
..++.++||..|++++.+++||..|+...+ ...++++.=.+++.....+ +. ...+.+|.++..+.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~-----------~p~l~~GliLv~~~ 114 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRD-----------LFEYIAGLILLGLA 114 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHhc
Confidence 346678999999999999999866554432 2233333222344444433 22 12366777666665
Q ss_pred hHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 170 FPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLALAV 210 (413)
Q Consensus 170 ~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~ 210 (413)
|......+-..- .+++.. +.++.+.++.+.+.++.....
T Consensus 115 Pgg~~S~v~T~l-AkGnva-lsv~lt~~stLl~~~~~P~l~ 153 (328)
T TIGR00832 115 RCIAMVFVWNQL-AKGDPE-YTLVLVAVNSLFQVFLYAPLA 153 (328)
T ss_pred chHHHHHHHHHH-cCCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 555555444332 466655 466667888888877776554
No 35
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=97.27 E-value=0.019 Score=51.11 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHH----HHHHH-HHhhhhcccCCCCCCchHHHHHHHHhhhcc
Q 036676 95 IGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVC----GIGVA-FVLRNTIDGLDQVGYGPFLVFMGVALSITA 169 (413)
Q Consensus 95 lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts 169 (413)
+.+.+.||..|+++|.+++|+..|+...+ ..+.+..+++ ++... ..+.. ......|..+...+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l-~~~l~~~~~i~Plla~~l~~~~~~~-----------~~~~~~Gl~l~~~~ 69 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLL-LIGLLAQFLIMPLLAFGLAWLLLPL-----------SPALALGLLLVAAC 69 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHH-HHHHHHHHHHHHHHHHHHH-HHTT-------------HHHHHHHHHHHHS
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHhcC
Confidence 46788999999999999999877664432 2222333333 33333 22222 22344444443333
Q ss_pred hHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036676 170 FPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGD 215 (413)
Q Consensus 170 ~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~ 215 (413)
|........... .+++.. +..+...++.+.+.+.......+...
T Consensus 70 P~~~~s~~~t~l-~~Gd~~-ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 70 PGGPASNVFTYL-AGGDVA-LSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp -B-THHHHHHHH-TT--HH-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHH-hCCCcc-cccceeeHHHHHHHHHHHHHHHHHhc
Confidence 332222222222 344444 66777778888888777777665543
No 36
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=97.25 E-value=0.052 Score=52.41 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=47.9
Q ss_pred HHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH-HHhhchhhHH
Q 036676 328 YFASSGLK-TDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLG-VLMNTKGLVE 393 (413)
Q Consensus 328 fF~~~G~~-ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g-~~l~~rg~~~ 393 (413)
..+-+|.. +|++.+.+..+|. -+++.+..+++-..+++..+|+.++-+-|+...+ ++|+.||..+
T Consensus 332 Lm~giGv~ytdl~ev~~alt~~-~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtG 398 (438)
T COG3493 332 LMAGIGVAYTDLNEVAAALTWQ-NVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTG 398 (438)
T ss_pred HHHhhhhccccHHHHHHHhchh-HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCC
Confidence 34556666 7888887765665 3445555667788899999999998777776655 9999998765
No 37
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.24 Score=47.42 Aligned_cols=192 Identities=16% Similarity=0.133 Sum_probs=108.1
Q ss_pred hcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHH
Q 036676 47 FRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFA 126 (413)
Q Consensus 47 ~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~ 126 (413)
.+|+=-+-+...+++|+.+|-+.-+..+ .....+....+.-..+++.+.++-.=.++|.+++++..++. +.-..
T Consensus 12 ~dk~l~~wv~l~i~~Gi~lG~~~p~~~~-----~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~-k~L~l 85 (342)
T COG0798 12 LDKYLTLWVFLAIAIGILLGVHFPGLAQ-----LLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDP-KPLIL 85 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhh-----hcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcc-hHHHH
Confidence 4454445577788999999976544221 11122344567778889999999999999999999866652 23334
Q ss_pred HhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHH
Q 036676 127 GISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILL 206 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~ 206 (413)
+....|+++=..++.+..-+.+ . .-....|.++-.-+|-+.+ ++.=.++ .+.-.+..+....+||++.++++
T Consensus 86 sL~~Nwii~P~lm~~la~~fl~--~----~pey~~GlILlglApC~aM-Vivw~~L-a~Gd~~~tlv~Va~n~l~qiv~y 157 (342)
T COG0798 86 SLFVNWIIGPLLMFALAWFFLP--D----EPEYRAGLILLGLAPCIAM-VIVWSGL-AKGDRELTLVLVAFNSLLQIVLY 157 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--C----CHHHHHHHHHHHhhhhHHH-HHHHHhh-ccCcHhhhhHHHHHHHHHHHHHH
Confidence 4455666554433333222100 1 1123344333322221111 2222343 33444557778889999999999
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036676 207 ALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCS 259 (413)
Q Consensus 207 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~ 259 (413)
+....+.-+. .+.....+.+...+...+++.++.+..-|+..+|.+
T Consensus 158 ~~~~~~~l~v-------~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~k 203 (342)
T COG0798 158 APLGKFFLGV-------ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKK 203 (342)
T ss_pred HHHHHHHHhh-------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7766543332 111112344555665666677777777777766664
No 38
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=97.16 E-value=0.31 Score=48.38 Aligned_cols=314 Identities=17% Similarity=0.187 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHh---hchhccCCcchhhcccCCCCchHHHHHH------HHHHHHH
Q 036676 29 LIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIV---LGPSAFGRNKEFMHHIFPKWSTPTLESV------ASIGLLF 99 (413)
Q Consensus 29 ~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~Gil---lGp~~l~~~~~~~~~l~~~~~~~~~~~l------~~lgl~~ 99 (413)
++-.++++.+.+.+++++-+|+ |-.=-|+=.|.+ ++|+.+...+ ++|++..+..+.+ .++-...
T Consensus 30 m~g~~a~~~v~G~~l~~IG~ri--Pi~k~yiGGg~il~~f~ps~Lv~~~-----~ip~~~~~~v~~fm~~~~Fl~ffIa~ 102 (414)
T PF03390_consen 30 MIGGFAVMMVLGFLLGEIGDRI--PILKDYIGGGAILCIFVPSALVYFG-----LIPESVVEAVTNFMKGSNFLYFFIAA 102 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC--hhhhccCChHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHhccCChHHHHHHH
Confidence 4556777778888888887764 333333333333 3555432211 1222222212111 1222222
Q ss_pred HHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHH-HHHHHhhh-----cchHHH
Q 036676 100 FLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLV-FMGVALSI-----TAFPVL 173 (413)
Q Consensus 100 l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~lg~~~s~-----ts~~vv 173 (413)
+.--.=+.+|++.+.|...|-+...+.+.+..+.++.+++..+|+++ ..++ .++.-+.. -..|.
T Consensus 103 LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~---------~~~i~~i~lPIMgGG~GaGavPL- 172 (414)
T PF03390_consen 103 LIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSF---------KDAIFYIVLPIMGGGMGAGAVPL- 172 (414)
T ss_pred HHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHhhhcCCCccccHhHH-
Confidence 33333358999999999999998889999899999999999988764 2333 22221111 11111
Q ss_pred HHHHHH-hcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC-CC----CC--------chhH-HHHHHHHHH
Q 036676 174 ARILAE-LKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDG-TASG-GE----KK--------SPVI-AIWVLLSGL 237 (413)
Q Consensus 174 ~~il~~-~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~-~~~~-~~----~~--------~~~~-~~~~~~~~~ 237 (413)
.+.-.| .+.-+++.-..++....+.++++++.-++.-.+.... +.++ |. .. +... .........
T Consensus 173 S~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gl 252 (414)
T PF03390_consen 173 SQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGL 252 (414)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHH
Confidence 111111 2223455566678888889998888777766554333 1111 10 00 0000 001111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCC---CCCchHHHHH
Q 036676 238 AFVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPK---GGNFAERLIE 314 (413)
Q Consensus 238 ~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~---~~~~~~~~~~ 314 (413)
+.....+..+.+... .+++|+..-..+.=.+++- .++.-|+-.+
T Consensus 253 -lla~~~y~~G~ll~~--------------------------------~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~ 299 (414)
T PF03390_consen 253 -LLACSFYILGVLLSK--------------------------------LIGIHAYAWMIILVAIVKAFGLVPESLEEGAK 299 (414)
T ss_pred -HHHHHHHHHHHHHHH--------------------------------hcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 111122222222222 2333333322222222221 1222344445
Q ss_pred HHHHhhHhhhhhHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHH-HHHHHhhchhhH
Q 036676 315 RIEDFVSGLLLPLYFASSGLK-TDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESI-VLGVLMNTKGLV 392 (413)
Q Consensus 315 ~i~~~~~~~f~plfF~~~G~~-ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~g~~l~~rg~~ 392 (413)
+..++...-+.+-.-+-+|.. +|++++.+..++. .+++++..+++-.+++++..|+.|+-+-|+. ..|++|+.+|..
T Consensus 300 ~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGt 378 (414)
T PF03390_consen 300 QWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGT 378 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCC
Confidence 555555556667777888888 8999988765564 4556666677888899999999998666555 556588888776
Q ss_pred H
Q 036676 393 E 393 (413)
Q Consensus 393 ~ 393 (413)
+
T Consensus 379 G 379 (414)
T PF03390_consen 379 G 379 (414)
T ss_pred C
Confidence 5
No 39
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.06 E-value=0.2 Score=48.02 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhh
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALS 166 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s 166 (413)
..++....+++.++||..|+.++.+++++..|+.. .-+.+....+++.-+.++.+...+ + . ..-+..|..+.
T Consensus 34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~-~vligl~~qfvlmPlla~~~~~~~----~--l-~~~l~~Gl~ll 105 (319)
T COG0385 34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPR-LVLIGLAAQFVLMPLLALLLAKLF----P--L-PPELAVGLLLL 105 (319)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHHHHHHc----C--C-CHHHHHhHHhe
Confidence 34555668999999999999999999997665543 233444455554444444443322 1 1 34567777776
Q ss_pred hcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 036676 167 ITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTV 246 (413)
Q Consensus 167 ~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 246 (413)
.+.|+.+.......- .++++.- .+..+.++.+++.++..+...+..+++ .+.+.....+.++..+..=.+.+.+
T Consensus 106 ~~~Pggv~S~~~t~l-AkGnVal-sV~~tsvStll~~f~tPllv~l~~~~~----v~~~~~~m~~~i~~~vllP~~LG~~ 179 (319)
T COG0385 106 GCCPGGVASNAMTYL-AKGNVAL-SVCSTSVSTLLGPFLTPLLVGLLAGGG----VPVDVGGMFLSILLQVLLPFVLGQL 179 (319)
T ss_pred eeCCCchhHHHHHHH-hcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCchHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555544 5666654 566778888888888887776543331 1123444444444444443445556
Q ss_pred HHHHHHHHHhhc
Q 036676 247 IRPAMRWVARRC 258 (413)
Q Consensus 247 ~~~~~~~~~~~~ 258 (413)
.++..+...++.
T Consensus 180 ~r~~~~~~~~~~ 191 (319)
T COG0385 180 LRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHH
Confidence 666555444443
No 40
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.90 E-value=0.46 Score=45.96 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHH---HHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhh
Q 036676 90 ESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAF---AGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALS 166 (413)
Q Consensus 90 ~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s 166 (413)
|...+.++..+.|..|++++.+++++..|+.-.... ..+.+.=.+++.+........ ...+..|....
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~---------~~~l~~Gl~~~ 100 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL---------PPELALGLLIL 100 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC---------CHHHHHHHHHH
Confidence 457788899999999999999999875544432222 222222223333333332211 23466665554
Q ss_pred hcchHHHHH-HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036676 167 ITAFPVLAR-ILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAG 214 (413)
Q Consensus 167 ~ts~~vv~~-il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~ 214 (413)
..-|.++.. +..-.. .+++... .+..+.++++.++++.........
T Consensus 101 ~~lPtTv~S~v~~T~~-AgGN~a~-Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 101 ACLPTTVSSSVVLTRL-AGGNVAL-ALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred hhCCchhhHHHHHHHH-cCCCHHH-HHHHHHHHhhhhHhHHHHHHHHHh
Confidence 444443332 222222 4444444 667888999999988888777554
No 41
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.69 E-value=0.023 Score=53.71 Aligned_cols=126 Identities=16% Similarity=0.241 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhChhhhHHHHHHHhhcCCCC-CchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHH
Q 036676 277 VMVSGFMTDLIGIHSIFGAFVFGLTIPKGG-NFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVIT 355 (413)
Q Consensus 277 ~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~-~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~ 355 (413)
+.....+++.++.++.++-.++|++++... ..-+ ..+.++.+ .++-..+.....|+++|++.+.+ .+.....+..
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~-~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~~ 79 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS-NVEGVNHL-AEFGVILLMFLIGLELDLERLWK--LRKAAFGVGV 79 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC-ChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHHH
Confidence 345567899999999999999999998621 1001 11335555 45666778889999999999876 3433333333
Q ss_pred HHHHHH-HHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhcccccc
Q 036676 356 TACAGK-ILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFN 408 (413)
Q Consensus 356 ~~~~~k-~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~ 408 (413)
..++.- ...++...+..+.++.++..+|..+.+.. .-+...+..+.+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~ 131 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKT 131 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccC
Confidence 333333 44445566778999999999999887653 2334445556665543
No 42
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.68 E-value=0.66 Score=44.63 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHh--hcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHH
Q 036676 35 LILVVSRFLAFL--FRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSS 112 (413)
Q Consensus 35 ~~l~~~~l~~~l--~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~ 112 (413)
.+...++..+.. ....++|..+--++.|+++|... . .+.. .. .--.-.-+.+.++|+++ -|.++++++
T Consensus 18 ~ia~~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~-~-~~~~---~~-~GI~fs~k~LLr~gIvL----lG~~ltl~~ 87 (334)
T COG2855 18 LIAGLAMLLGAFFFSIHLGLSALTLAILLGILLGILP-Q-IPAQ---TS-AGITFSSKKLLRLGIVL----LGFRLTLSD 87 (334)
T ss_pred HHHHHHHHHhchHHhhhcCchHHHHHHHHHHHHhccc-c-chhh---hc-cchhhhHHHHHHHHHHH----HcceeeHHH
Confidence 344444555543 44578999999999999999432 1 1110 00 00111345577777775 588999999
Q ss_pred HHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcch---HHHHHHHHHhcccCchhHH
Q 036676 113 IRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAF---PVLARILAELKLLTTRVGE 189 (413)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~---~vv~~il~~~~~~~~~~~~ 189 (413)
+.+.+.+...+.......+++.++.+..+++.+. ..+.++|+-.|.+-. ..+.++++. .+++...
T Consensus 88 i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~---------~~a~Lia~GssICGasAiaA~~pvika---~~~eva~ 155 (334)
T COG2855 88 IADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDK---------KLALLIAAGSSICGASAIAATAPVIKA---EEEEVAV 155 (334)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHccchhhHHHHHHHhCCcCCC---Cccccce
Confidence 9999999888888877778888888888777643 677888765544433 333334332 2444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036676 190 TAMSAAAFNDVAAWILLALAVA 211 (413)
Q Consensus 190 ~~l~~a~~~D~~~~~~~~i~~~ 211 (413)
-+....+++-+.++ .+..+..
T Consensus 156 aIa~V~lfgtia~l-lyP~l~~ 176 (334)
T COG2855 156 AIAVVVLFGTLAML-LYPLLYP 176 (334)
T ss_pred ehhhHHHHHHHHHH-HHHHHHH
Confidence 45555555554444 3444433
No 43
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=96.48 E-value=0.83 Score=44.39 Aligned_cols=263 Identities=14% Similarity=0.116 Sum_probs=137.8
Q ss_pred HHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHH-HHHhh-----hcchHHH
Q 036676 100 FLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFM-GVALS-----ITAFPVL 173 (413)
Q Consensus 100 l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-g~~~s-----~ts~~vv 173 (413)
+.--.=+.+|++.+.|...|-+...+.+.+..+..+.+++..+|+++ ..+++. ..=+. .-..|.
T Consensus 34 LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~---------~~~~~~i~lPIm~GG~GaGavPL- 103 (347)
T TIGR00783 34 LIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGF---------DHSLMYIVMPIMAGGVGAGIVPL- 103 (347)
T ss_pred HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH---------hHhhheeeehhcCCCcccchhhH-
Confidence 33333468999999999999888888888888888888888888754 222211 11000 001111
Q ss_pred HHHHH-HhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 174 ARILA-ELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMR 252 (413)
Q Consensus 174 ~~il~-~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 252 (413)
..+-+ -.+.-+++.-..+.....+.++++++.-+++-.+-....+=+|+ ...... -.. -.
T Consensus 104 S~~Y~~~~g~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~-G~L~~~----~~~--------------~~ 164 (347)
T TIGR00783 104 SIIYSAITGRSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGH-GELVRS----EKR--------------ED 164 (347)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCC-ceEeec----CCc--------------ch
Confidence 11111 11222334444466666666776666655554432221100000 000000 000 00
Q ss_pred HHHhhcCCCCCCcchHHHHHHHHHH---HHHHHHHHHh-ChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhh---Hhhhh
Q 036676 253 WVARRCSPEHDVVDEAYICLTLAGV---MVSGFMTDLI-GIHSIFGAFVFGLTIPKGGNFAERLIERIEDFV---SGLLL 325 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~a~~~-g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~---~~~f~ 325 (413)
...++.. ++.+.+-.....-+.++ +..+.+.+.+ ++|+..-+.+.|.++....-.+++.+++-++.. ..-+.
T Consensus 165 ~~~~~~~-~~~~~~~~~~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt 243 (347)
T TIGR00783 165 AEKAKEI-TEIKIDVKLMGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLT 243 (347)
T ss_pred hhhcccc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000111111111111 1222223333 578888889999998875555666776666552 22223
Q ss_pred hHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH-HHHhhchhhHH
Q 036676 326 PLYFASSGLK-TDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVL-GVLMNTKGLVE 393 (413)
Q Consensus 326 plfF~~~G~~-ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-g~~l~~rg~~~ 393 (413)
+..++-+|+. .|++.+.+..++ ..+++++..+++-.+++++.+|+.|+-+-|+... |++++.+|.-+
T Consensus 244 ~~ll~giGla~t~l~~L~~a~t~-~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtG 312 (347)
T TIGR00783 244 WPLMVGVGVSYIDLDDLVAALSW-QFVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTG 312 (347)
T ss_pred HHHHHHcccccCCHHHHHHHhch-hHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCC
Confidence 3333444766 788888774334 3556667777888899999999999866666655 66898888755
No 44
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=96.47 E-value=0.42 Score=45.60 Aligned_cols=205 Identities=15% Similarity=0.133 Sum_probs=125.8
Q ss_pred HHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHH
Q 036676 96 GLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLAR 175 (413)
Q Consensus 96 gl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~ 175 (413)
-+...+|-.|.++|+|...+..|+...+...-+.++++++..+..++|.+- - .....+.+-++++.+-.+.=..
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g----~--~Gls~laiiaa~~~~Ng~ly~a 123 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG----I--FGLSGLAIVAAMSNSNGGLYAA 123 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc----c--cchHHHHHHHHHhcCcHHHHHH
Confidence 456788999999999998888888888878888888999988888887531 0 1134455555566666677777
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 176 ILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVA 255 (413)
Q Consensus 176 il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 255 (413)
+..|++ -+++.|-..+ ..+|| .+. .+.++++. .+ .
T Consensus 124 l~~~yG-~~~d~gA~~~--~sl~~-------------------------GPf------~tm~aLga----------~g-L 158 (312)
T PRK12460 124 LMGEFG-DERDVGAISI--LSLND-------------------------GPF------FTMLALGA----------AG-L 158 (312)
T ss_pred HHHHcC-CHhhhhHHhh--hhhcc-------------------------CcH------HHHHHHHH----------HH-H
Confidence 888888 3555554222 11111 111 11111110 01 1
Q ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcc
Q 036676 256 RRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLK 335 (413)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ 335 (413)
.+.+ ...+ .. .+=+++.|++++|..+ +..+..++- ..+.+|++-+..|++
T Consensus 159 A~ip--------~~~l--v~----------------lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~ 208 (312)
T PRK12460 159 ANIP--------IMAL--VA----------------ALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAG 208 (312)
T ss_pred hcCC--------hHHH--HH----------------HHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCC
Confidence 1111 1001 11 1225778888888332 344555555 456788888999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 036676 336 TDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLG 383 (413)
Q Consensus 336 ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g 383 (413)
+|++++.+. .+ ..+.+.+..+..-....+...|+.|.|.+.+..++
T Consensus 209 lnl~~I~~~-G~-~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~ 254 (312)
T PRK12460 209 INLSMLLQA-GL-AGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAAS 254 (312)
T ss_pred eeHHHHHHh-Ch-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 999998773 23 23333343444455566666688899999888888
No 45
>PRK03818 putative transporter; Validated
Probab=96.45 E-value=0.06 Score=56.15 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHh-hcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 036676 29 LIVQTTLILVVSRFLAFL-FRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLE 107 (413)
Q Consensus 29 ~~~~~~~~l~~~~l~~~l-~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle 107 (413)
-++.+++.+.+++++|.+ .+.+++- +.|-+++|+++|...-. ... ..+....+++.++|+.+.++..|++
T Consensus 7 ~~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~-~~~-------~~~~~~~~~~~~~gl~lFv~~vGl~ 77 (552)
T PRK03818 7 TVSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQ-FGL-------TLDSDMLHFIQEFGLILFVYTIGIQ 77 (552)
T ss_pred HHHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccc-cCc-------ccChHHHHHHHHHHHHHHHHHHhhc
Confidence 366677777778888875 3335565 48999999999962210 000 1134567789999999999999999
Q ss_pred cChHHH---HhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHHHH
Q 036676 108 LDLSSI---RRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARILA 178 (413)
Q Consensus 108 ~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~il~ 178 (413)
.-.+.+ |+++.+...+++.-.+++.++++...++++.+ .....|... +-|++|......+
T Consensus 78 ~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 78 VGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIP-----------LPVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHhhccccccHHHHHHHH
Confidence 997766 45555555666666666666666665555543 234444433 5566666655544
No 46
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.43 E-value=0.12 Score=54.82 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhc
Q 036676 37 LVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRS 116 (413)
Q Consensus 37 l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~ 116 (413)
+++....+.+++.+|++...|-.++|+++..+-.. + +-.+.++.+..+-+.+.....|+++|++.+.++
T Consensus 225 l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~------~-----~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~ 293 (621)
T PRK03562 225 LFLVFGFGLLMEEVGLSMALGAFLAGVLLASSEYR------H-----ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLEN 293 (621)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCccH------H-----HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 34445566778888999999999999998853110 0 123456667777777788888999999998876
Q ss_pred CcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcch--HHHHHHHHHhcccCchhHHHHHHH
Q 036676 117 GKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAF--PVLARILAELKLLTTRVGETAMSA 194 (413)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~--~vv~~il~~~~~~~~~~~~~~l~~ 194 (413)
........+..++.=++.++..+.+.+.+. ..++.+|..++.-.. -++..+-.+.|.++.+....++..
T Consensus 294 ~~~il~~~~~~~~~K~~~~~~~~~~~g~~~---------~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~ 364 (621)
T PRK03562 294 PLRILILLLGFLAIKIAMLWLLARPLGVPR---------KQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLA 364 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 544433333322223445555556665543 678888887765322 234455567787888888877765
Q ss_pred HHHHHHHHHHH
Q 036676 195 AAFNDVAAWIL 205 (413)
Q Consensus 195 a~~~D~~~~~~ 205 (413)
.++.=++.-++
T Consensus 365 v~lS~~~tP~l 375 (621)
T PRK03562 365 VALSMAATPLL 375 (621)
T ss_pred HHHHHHHHHHH
Confidence 55554444333
No 47
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=96.39 E-value=0.042 Score=48.97 Aligned_cols=127 Identities=24% Similarity=0.413 Sum_probs=90.6
Q ss_pred HHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChH-----HHHhcCcchhHHHHHHhHH
Q 036676 56 IAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLS-----SIRRSGKRAFVIAFAGISL 130 (413)
Q Consensus 56 vg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~-----~l~~~~~~~~~~~~~~~~~ 130 (413)
++.+++|+++|-..... .+..+...+..+.+++|..|.++..+ ++|+.+++.+.+.+...+-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45678899999543211 22236788999999999999998544 5677788999988888888
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHh---hhcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 036676 131 PFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVAL---SITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLA 207 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~---s~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~ 207 (413)
+.+.+.++..+++.+. .+++.+++-+ |-|+ + ++.|.+ +.+.|.+..-.=++.|.++++...
T Consensus 69 Sllgg~l~~~ll~~~~---------~~~lav~sG~GwYSlsg-~----~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P 132 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL---------KESLAVASGFGWYSLSG-V----LITQLY--GPELGTIAFLSNLFREILAIILIP 132 (191)
T ss_pred HHHHHHHHHHHhcCCH---------HHHHHHHccCcHHHhHH-H----HHHhhh--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777654 5666666533 2232 2 344433 668899888888888888888777
Q ss_pred HHHH
Q 036676 208 LAVA 211 (413)
Q Consensus 208 i~~~ 211 (413)
++.-
T Consensus 133 ~~~r 136 (191)
T PF03956_consen 133 LLAR 136 (191)
T ss_pred HHHH
Confidence 6654
No 48
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=96.27 E-value=0.1 Score=45.59 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhh--cccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChH
Q 036676 34 TLILVVSRFLAFLF--RPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLS 111 (413)
Q Consensus 34 ~~~l~~~~l~~~l~--~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~ 111 (413)
++.+.++.++|.+- +++++-...|-+++|+++|... ...+.. .+.+..+.+.++++.+.++..|++...+
T Consensus 3 fl~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~--~~~~~~------~~~~~~~~l~~~GL~lFl~~VGl~aG~~ 74 (169)
T PF06826_consen 3 FLGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALG--RTGPIF------LPISAPSFLRQLGLALFLAAVGLSAGPG 74 (169)
T ss_pred hHHHHHHHHhcceeeccceeccccHHHHHHHHHHHHhh--hccCCC------CCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777764 6688888889999999999642 111110 1345677899999999999999998876
Q ss_pred HH---HhcCcchhHHHHHHhHHHHHHHHHHHH-HhhhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHHHHH
Q 036676 112 SI---RRSGKRAFVIAFAGISLPFVCGIGVAF-VLRNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARILAE 179 (413)
Q Consensus 112 ~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~il~~ 179 (413)
-+ |+++.+....++.-..++.+++...++ +++.+ .....|... +-|++|......+.
T Consensus 75 F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~-----------~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 75 FFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLN-----------PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------HHHHHHHHHccccCcHHHHHHHHh
Confidence 55 456666666666666667777776666 44432 234455443 55777766665444
No 49
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.25 E-value=0.73 Score=43.92 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhcChHHHHhcCcch---hHHHHHHhHH-HHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcc
Q 036676 94 SIGLLFFLFLVGLELDLSSIRRSGKRA---FVIAFAGISL-PFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITA 169 (413)
Q Consensus 94 ~lgl~~l~F~~Gle~~~~~l~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts 169 (413)
--.+.+++|..|+.++.+++++..|+. ....+...++ |.+ ++.....++.+ .....|..+..+.
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~l~-----------~~~~~glvL~~~~ 78 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFKLP-----------PELAVGVLIVGCC 78 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhCCC-----------HHHHHHHHheeeC
Confidence 334889999999999999998866532 2222334433 433 34444444432 2334444333333
Q ss_pred hHHHHH-HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 170 FPVLAR-ILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIA 213 (413)
Q Consensus 170 ~~vv~~-il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~ 213 (413)
|..... ++.+.-.-|.+ ...+...++.+.+.+...+...+.
T Consensus 79 P~~~~s~v~t~~~~gn~~---la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 79 PGGTASNVFTYLLKGDMA---LSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred CCchHHHHHHHHhCCCHh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 33332112333 344555566666666666655543
No 50
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.15 E-value=0.24 Score=52.46 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhc
Q 036676 37 LVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRS 116 (413)
Q Consensus 37 l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~ 116 (413)
+++....+.+++.+|++..+|-.++|++++.+-. . + +-.+.++.+.++-+.+.....|+++|++.+.++
T Consensus 222 l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~---~---~-----~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~ 290 (601)
T PRK03659 222 LLLVLGSALFMDALGLSMALGTFIAGVLLAESEY---R---H-----ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTH 290 (601)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCch---H---H-----HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHh
Confidence 3344555667788999999999999999985311 0 1 123456777788888888899999999999876
Q ss_pred CcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcch--HHHHHHHHHhcccCchhHHHHHHH
Q 036676 117 GKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAF--PVLARILAELKLLTTRVGETAMSA 194 (413)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~--~vv~~il~~~~~~~~~~~~~~l~~ 194 (413)
+.....+.+..++.=++.++..+.+.+.+. ..++.+|..++.... -++...-.+.+..+.+....++..
T Consensus 291 ~~~il~~~~~~l~~K~~~~~~~~~~~g~~~---------~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~ 361 (601)
T PRK03659 291 LLWVLISVVVLVAVKGLVLYLLARLYGLRS---------SERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVV 361 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 554433333322222444555555555432 677888877765431 223334456677777777777666
Q ss_pred HHHHHHHHHHHHH
Q 036676 195 AAFNDVAAWILLA 207 (413)
Q Consensus 195 a~~~D~~~~~~~~ 207 (413)
.++.=+..-++..
T Consensus 362 v~ls~~~tP~l~~ 374 (601)
T PRK03659 362 VTLSMMTTPLLMK 374 (601)
T ss_pred HHHHHHHHHHHHH
Confidence 6655554444443
No 51
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=96.12 E-value=0.048 Score=57.02 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHh-hcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 036676 30 IVQTTLILVVSRFLAFL-FRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLEL 108 (413)
Q Consensus 30 ~~~~~~~l~~~~l~~~l-~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~ 108 (413)
++.+++++.+++.+|.+ .+.+++-.+.|-+++|+++|...... -+.+.++++.+.+|..|++.
T Consensus 12 ~l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~i----------------~~~v~~~gl~lFvy~vG~~~ 75 (562)
T TIGR03802 12 EIALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQI----------------DPGVKAVFFALFIFAIGYEV 75 (562)
T ss_pred HHHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCCC----------------ChHHHHHHHHHHHHHhhhcc
Confidence 55677778888888887 45588988999999999999753321 11267899999999999999
Q ss_pred ChHHHHhcCc---chhHHHHHHhHHHHHHHHHHHHHhhhh
Q 036676 109 DLSSIRRSGK---RAFVIAFAGISLPFVCGIGVAFVLRNT 145 (413)
Q Consensus 109 ~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (413)
-.+.++.-.| +....++.-.+..+.+.....++++.+
T Consensus 76 Gp~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~ 115 (562)
T TIGR03802 76 GPQFFASLKKDGLREIILALVFAVSGLITVYALAKIFGLD 115 (562)
T ss_pred CHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9887765444 444444444444455555555556553
No 52
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.95 E-value=0.13 Score=53.89 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCC--CchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHH
Q 036676 274 LAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGG--NFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLA 351 (413)
Q Consensus 274 l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~--~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~ 351 (413)
+..+..+..+++.++.++++|=.++|++++... ...+ .+.++.+ .++-..++.+.+|+++|++.+.+. .....
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~--~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~--~~~~~ 89 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD--TKLAPEL-AELGVILLMFGVGLHFSLKDLMAV--KSIAI 89 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc--hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH--hhHHH
Confidence 455566677888899999999999999998621 1111 1345555 556666778888999999887652 22111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhccccccc
Q 036676 352 LVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNF 409 (413)
Q Consensus 352 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~ 409 (413)
.......+.-.+.++...+..+.++.++..+|..++.-+ . .+......+.|.++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS-~-~vv~~~L~e~~~l~s~ 145 (558)
T PRK10669 90 PGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAS-T-VVLLRALEERQLIDSQ 145 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-H-HHHHHHHHhcCcccCc
Confidence 111112222233444455677899999999998766532 2 3444456666766553
No 53
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.87 E-value=0.13 Score=49.43 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHH----HhChhhhHHHHHHHhhcCC-CCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHH
Q 036676 274 LAGVMVSGFMTD----LIGIHSIFGAFVFGLTIPK-GGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWG 348 (413)
Q Consensus 274 l~~~~~~~~~a~----~~g~s~~lgaf~aGl~l~~-~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~ 348 (413)
+.+......+++ ..++++.+=|.+.|++++| .....++.++-++.. ...+..+=-+..|.+++++++.+. .+.
T Consensus 7 ~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G~~ 84 (305)
T PF03601_consen 7 FAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-GWK 84 (305)
T ss_pred HHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-Ccc
Confidence 344444444444 4678899999999999998 555556665555544 445666777889999999998773 343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhh
Q 036676 349 LLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGK 401 (413)
Q Consensus 349 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~ 401 (413)
..+..++.....=....++..|.+|.|++.+..++.+.+.=|.-++....-..
T Consensus 85 ~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i 137 (305)
T PF03601_consen 85 GLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVI 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccc
Confidence 33333333333344444555599999999999999987777766655544333
No 54
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=95.37 E-value=0.86 Score=43.38 Aligned_cols=174 Identities=15% Similarity=0.095 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHH
Q 036676 95 IGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLA 174 (413)
Q Consensus 95 lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~ 174 (413)
--+...+|-.|.++|+|...+..||...+.+.-+.+.++++.++..+++..-- ..+.-.....+.+-++++.+-.+.=.
T Consensus 49 ~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi-~~g~f~GlS~LAiiaa~~~~NggLY~ 127 (314)
T PF03812_consen 49 PIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGI-QSGFFLGLSALAIIAAMTNSNGGLYL 127 (314)
T ss_pred HHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCcccc-ccccccchHHHHHHHHHhcCCHHHHH
Confidence 34567889999999999999998998888888999999999998888875310 00000123556666667777778788
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 175 RILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWV 254 (413)
Q Consensus 175 ~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 254 (413)
.+..|++ -+++.+-. +...++|.=. +..++++..
T Consensus 128 aL~~~yG-d~~D~gA~--~i~sl~~GPf-------------------------------~tMl~LG~s------------ 161 (314)
T PF03812_consen 128 ALMGQYG-DEEDVGAF--SILSLNDGPF-------------------------------FTMLALGAS------------ 161 (314)
T ss_pred HHHHHhC-CHHHhHHH--HHHHhhhhHH-------------------------------HHHHHHhhc------------
Confidence 8888888 34444332 1222222111 111111100
Q ss_pred HhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhc
Q 036676 255 ARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGL 334 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~ 334 (413)
+..+-+...+... +--++.|++++|.. ++..+.+.+- ....+|+|-...|.
T Consensus 162 -------G~a~ip~~~lv~~------------------llP~iiG~iLGNLD---~~~r~fl~~~-~~~lIPF~~f~lGa 212 (314)
T PF03812_consen 162 -------GLANIPWMSLVAA------------------LLPIIIGMILGNLD---PDFRKFLAPG-VPILIPFFGFALGA 212 (314)
T ss_pred -------cccCCCHHHHHHH------------------HHHHHHHHHHhcCC---HHHHHHHhcC-CCeeeehhhhhhcC
Confidence 0000011111000 12467889999843 4566666666 67899999999999
Q ss_pred ccccccccch
Q 036676 335 KTDVATIRDA 344 (413)
Q Consensus 335 ~ld~~~l~~~ 344 (413)
.+|++.+.+.
T Consensus 213 ~inl~~i~~a 222 (314)
T PF03812_consen 213 GINLSNIIKA 222 (314)
T ss_pred CCCHHHHHHh
Confidence 9999998874
No 55
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.32 E-value=1.2 Score=44.53 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHH-HHHHHHHHHHhhhcC
Q 036676 31 VQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVAS-IGLLFFLFLVGLELD 109 (413)
Q Consensus 31 ~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~-lgl~~l~F~~Gle~~ 109 (413)
..+..++.+....+++++..|++.+.|--++|+++..+-..- .+-.+.++.+.+ +-+-+.....|+++|
T Consensus 222 ~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~----------~~l~~~i~~~~~~~fiplFFi~vG~~~d 291 (397)
T COG0475 222 LFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRK----------HELEEKIEPFGDGLFIPLFFISVGMSLD 291 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccch----------HHHHHHHHhHHhHHHHHHHHHHhhHHcC
Confidence 355667778888899999999999999999999998642210 123567888888 888889999999999
Q ss_pred hHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhh
Q 036676 110 LSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRN 144 (413)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (413)
++.+.++...........+..=+..++...+..+.
T Consensus 292 l~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~ 326 (397)
T COG0475 292 LGVLLENLLLILLLVALAILGKILGAYLAARLLGF 326 (397)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999877654443333333334455555566653
No 56
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.05 E-value=0.27 Score=51.60 Aligned_cols=126 Identities=16% Similarity=0.162 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCc--hHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHH
Q 036676 274 LAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNF--AERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLA 351 (413)
Q Consensus 274 l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~--~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~ 351 (413)
+.++..+..+++.++.+.+++-.++|++++..... ...-.+..+.+ .++..++..+..|+++|++.+.+ .+....
T Consensus 15 l~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~~~~ 91 (562)
T PRK05326 15 LLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALGPAL 91 (562)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHHHHH
Confidence 44445556777889999999999999999863111 00111233444 66778888899999999999887 455554
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhcc
Q 036676 352 LVITTACAGK-ILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKK 404 (413)
Q Consensus 352 ~~~~~~~~~k-~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~g 404 (413)
.+....++.- .+.++...+..+.++.+++.+|..+++.....+ ..+..+.|
T Consensus 92 ~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v--~~iL~~~~ 143 (562)
T PRK05326 92 SLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAV--FSLLRGKG 143 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHH--HHHHhccC
Confidence 4444443333 333455667789999999999998877654432 23445555
No 57
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=94.98 E-value=1.1 Score=43.53 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=81.4
Q ss_pred hcc-cCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHH
Q 036676 47 FRP-LRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAF 125 (413)
Q Consensus 47 ~~r-~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~ 125 (413)
.+| ++.|.+.+. +.|+++....... |+.-.+.++.+++.+.-+-+|..|..++.++.|+..|.......
T Consensus 176 ~~~~~~nP~iia~-i~Gl~~~~~~i~l---------P~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~ 245 (321)
T TIGR00946 176 WKKLIKFPPLWAP-LLSVILSLVGFKM---------PGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALI 245 (321)
T ss_pred HHHHHhCCChHHH-HHHHHHHHHhhcC---------cHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHH
Confidence 344 578888876 5667776543321 22246789999999999999999999999888877677766666
Q ss_pred HHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHH
Q 036676 126 AGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWIL 205 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~ 205 (413)
.-.++.=.+++.+...++.+ ....-...+.++..+++...++.++-..+.+ ..-....+..+.+++.
T Consensus 246 ~klil~P~i~~~~~~~~~l~----------~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~---~aa~~v~~sT~ls~~t 312 (321)
T TIGR00946 246 VRFLVQPAVMAGISKLIGLR----------GLELSVAILQAALPGGAVAAVLATEYEVDVE---LASTAVTLSTVLSLIS 312 (321)
T ss_pred HHHHHHHHHHHHHHHHhCCC----------hHHHHHHHHHHcCChhhHHHHHHHHhCCCHH---HHHHHHHHHHHHHHHH
Confidence 66655333334444444432 1223333344444444444444443213433 3334444445555554
Q ss_pred HHHH
Q 036676 206 LALA 209 (413)
Q Consensus 206 ~~i~ 209 (413)
+.+.
T Consensus 313 lp~~ 316 (321)
T TIGR00946 313 LPLF 316 (321)
T ss_pred HHHH
Confidence 4443
No 58
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=94.95 E-value=0.61 Score=40.15 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhcccCCC--hhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHH
Q 036676 35 LILVVSRFLAFLFRPLRQP--KVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSS 112 (413)
Q Consensus 35 ~~l~~~~l~~~l~~r~~iP--~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~ 112 (413)
+.+.++.+.+.+++|+|+| ...|-++++.++.-. +.. +.+.-+.+.+.+..++--..|.+++.+.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~-----------~~~~P~~~~~~~qviiG~~iG~~f~~~~ 68 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGL-----------EITLPPWLLALAQVVIGILIGSRFTREV 68 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCc-----------cCCCCHHHHHHHHHHHHHHHHccCCHHH
Confidence 3566788889999999999 566666666665421 111 1122345677777788889999999999
Q ss_pred HHhcCcchhHHHHHHhHHHHHHHHHHHHHhh
Q 036676 113 IRRSGKRAFVIAFAGISLPFVCGIGVAFVLR 143 (413)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (413)
+++..+... ..+.........+....+++.
T Consensus 69 l~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~ 98 (156)
T TIGR03082 69 LAELKRLWP-AALLSTVLLLALSALLAWLLA 98 (156)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 987654333 333333444444444444443
No 59
>PRK04972 putative transporter; Provisional
Probab=94.67 E-value=0.5 Score=49.42 Aligned_cols=122 Identities=23% Similarity=0.370 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHh-hcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 036676 30 IVQTTLILVVSRFLAFL-FRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLEL 108 (413)
Q Consensus 30 ~~~~~~~l~~~~l~~~l-~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~ 108 (413)
++.+++.+.+++++|.+ .+.+++-...|-+++|+++|...... -+...++|+.+.++..|++.
T Consensus 14 ~~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~----------------~~~~~~~gl~lF~~~vG~~~ 77 (558)
T PRK04972 14 ILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI----------------NTDALNLGFMLFIFCVGVEA 77 (558)
T ss_pred hHHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCC----------------ChHHHHHHHHHHHHHHhhhh
Confidence 55677778888888887 45588888889999999999743221 11135899999999999999
Q ss_pred ChHHHH---hcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHHHH
Q 036676 109 DLSSIR---RSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARILA 178 (413)
Q Consensus 109 ~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~il~ 178 (413)
-.+.++ +.+.+...+++.-.+++.+++....++++.+. ....|... +.|++|.+....+
T Consensus 78 Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 78 GPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI-----------GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----------HHHHHHhhccccCcHHHHHHHH
Confidence 977664 45555555666555566666666666655432 23333332 4566665555544
No 60
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.26 E-value=0.66 Score=45.14 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=68.2
Q ss_pred hChhhhHHHHHHHhhcCCCC--CchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 036676 287 IGIHSIFGAFVFGLTIPKGG--NFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILG 364 (413)
Q Consensus 287 ~g~s~~lgaf~aGl~l~~~~--~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~ 364 (413)
.++++.+=|.+.|++++|.. +..++..+-++-. ...+.-+=-+..|++++++++.+. .+ ..+...+..+..-+..
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~-~k~lLr~gIVLlG~~l~~~~i~~~-G~-~~l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFA-KPFLLRIGITLYGFRLTFPYIADV-GP-NEIVADTLILTSTFFL 105 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHH-HHHHHHHHHHHHCccccHHHHHHh-hH-HHHHHHHHHHHHHHHH
Confidence 47888889999999999832 2333333333322 233344556778999999998762 33 3333333334444444
Q ss_pred -HHHHHHHhCCCchhHHHHHHHhhchhhHHHHHH
Q 036676 365 -TFAVAVMLKIPARESIVLGVLMNTKGLVELIVL 397 (413)
Q Consensus 365 -~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a 397 (413)
.++..|.+|.|++.+..++.+-+-=|.-++...
T Consensus 106 ~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~ 139 (335)
T TIGR00698 106 TVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAI 139 (335)
T ss_pred HHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHh
Confidence 455558899999999999988666665555443
No 61
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=94.22 E-value=1.5 Score=43.75 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHhhcc--cCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 036676 31 VQTTLILVVSRFLAFLFRP--LRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLEL 108 (413)
Q Consensus 31 ~~~~~~l~~~~l~~~l~~r--~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~ 108 (413)
..+.+...+++.+....++ ..+|..+..+++|+++.+.. +..+. + ...++..+.+++.++-+.+-.+=..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~~~--~----~~~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFKKF--P----WVAERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHhCc--c----ccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555566666666664 78999999999999998753 11110 0 12355899999999999999888999
Q ss_pred ChHHHHhcCcchhHHHHHHhHHHHHHH-HHHHHHhhhhcccCCCCCCchHHH----HHHHHhhhcchHH--HHHHHHHhc
Q 036676 109 DLSSIRRSGKRAFVIAFAGISLPFVCG-IGVAFVLRNTIDGLDQVGYGPFLV----FMGVALSITAFPV--LARILAELK 181 (413)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l----~lg~~~s~ts~~v--v~~il~~~~ 181 (413)
++.++.+..-+...+.+.|.+...... ++....++.++ ..+. ..|..+-+|..++ ...+.+++|
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~y---------daaV~~ag~~G~~lGatptaianm~av~~~yg 365 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDY---------DAAVLCAGHCGFGLGATPTAIANMQAVTERFG 365 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchH---------HHHHHhcccccccccchHHHHHHHHHHHhccC
Confidence 999999999999999999988876544 55566666654 2222 2333443443332 333555556
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036676 182 LLTTRVGETAMSAAAFNDVAAWILLALA 209 (413)
Q Consensus 182 ~~~~~~~~~~l~~a~~~D~~~~~~~~i~ 209 (413)
-.++.+=-.=+..+.+-|+.-..+....
T Consensus 366 ~s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 366 PSHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred CCCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 4444444444567788888876665544
No 62
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.11 E-value=0.4 Score=46.08 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=75.4
Q ss_pred HHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHH
Q 036676 284 TDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKIL 363 (413)
Q Consensus 284 a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~ 363 (413)
.+..|.++..=|.+.|+++++..+.+++..+-++-- ......+=-++.|++++++++.+. .. -.+.+.+..+..-++
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~-~~v~~~~~~l~~t~~ 108 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GG-SGVLIIAITLSSTFL 108 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Cc-cHHHHHHHHHHHHHH
Confidence 445667789999999999997555555554444433 333444556778999999998772 33 344455555666777
Q ss_pred HHHHHHHHhCCCchhHHHHHHHhhchhhHHHH
Q 036676 364 GTFAVAVMLKIPARESIVLGVLMNTKGLVELI 395 (413)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv 395 (413)
.++...+.+|.|++.+..++.+-+.=|.-++.
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssICGasAia 140 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSICGASAIA 140 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhhHHHHHH
Confidence 77788889999999999999875555544443
No 63
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.06 E-value=0.57 Score=40.22 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=64.5
Q ss_pred CCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcc----hhHHHHH
Q 036676 51 RQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSGKR----AFVIAFA 126 (413)
Q Consensus 51 ~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~----~~~~~~~ 126 (413)
++-...|-+++|+++|.. +...+. +..-+....+.+.++|+.+.++..|++--.+-++.-.+. ...++..
T Consensus 20 ~LG~~~G~L~vgL~~G~~--~~~~p~----~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~ 93 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHF--GATGPL----TWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGAL 93 (154)
T ss_pred EecccHHHHHHHHHHHhc--cccCCc----ceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence 334478999999999963 322211 112234567789999999999999999987766533222 2222222
Q ss_pred HhHHHHHHHHHHH-HHhhhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHHHHHh
Q 036676 127 GISLPFVCGIGVA-FVLRNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARILAEL 180 (413)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~il~~~ 180 (413)
-.+++..++..+. ++++.+ .....|.+. +-|++|......+..
T Consensus 94 v~~~~~~~~~~~~~~~~~~~-----------~~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 94 ITVVPTLLVAVALIKLLRIN-----------YALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------HHHHHHHHhccccChHHHHHHHHHh
Confidence 2233333333333 333332 234555543 667777766665543
No 64
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.99 E-value=0.29 Score=50.91 Aligned_cols=117 Identities=19% Similarity=0.285 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchH-HHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHH
Q 036676 273 TLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAE-RLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLA 351 (413)
Q Consensus 273 ~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~-~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~ 351 (413)
.+..+.....+++.+++++.++-.++|++++......+ +... +.+ ..++.|......|.++|.+.+.+ ++....
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~-~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i~ 80 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIV-LFLFLPPLLFEAAMNTDLRELRE--NFRPIA 80 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHH-HHHHHHHHHHHHHhcCCHHHHHH--HHHHHH
Confidence 34445555677888899999999999998874211110 0111 112 45788889999999999999887 454444
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHH
Q 036676 352 LVITTACAG-KILGTFAVAVMLKIPARESIVLGVLMNTKGLVEL 394 (413)
Q Consensus 352 ~~~~~~~~~-k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~l 394 (413)
.+.+...+. -.+.++...+..+.++..++.+|..++|...+..
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 443333333 3333444445678999999999999999886664
No 65
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.97 E-value=1.5 Score=48.23 Aligned_cols=136 Identities=14% Similarity=0.180 Sum_probs=75.2
Q ss_pred HHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHH-HHHHHHHHHHHHhhhcChHHHHhcCcc
Q 036676 41 RFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESV-ASIGLLFFLFLVGLELDLSSIRRSGKR 119 (413)
Q Consensus 41 ~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l-~~lgl~~l~F~~Gle~~~~~l~~~~~~ 119 (413)
...+.+++.+|+..+.|-.++|+++...-++ . +-.+.++.+ ..+-+-+.....|+++|++.+.+. ..
T Consensus 282 l~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~--~---------~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~-~~ 349 (832)
T PLN03159 282 MISGFITDAIGTHSVFGAFVFGLVIPNGPLG--V---------TLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGP-AT 349 (832)
T ss_pred HHHHHHHHHhCccHHHHHHHHhhccCCcchH--H---------HHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCc-hH
Confidence 4456667777888888888888887521000 0 012233333 455566677778999999887532 11
Q ss_pred hhHH---HHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchH--HHHHHHHHhcccCchhHHHHHHH
Q 036676 120 AFVI---AFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFP--VLARILAELKLLTTRVGETAMSA 194 (413)
Q Consensus 120 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~--vv~~il~~~~~~~~~~~~~~l~~ 194 (413)
.... .+..++.=++.+++.+.+.+.+. .+++.+|..+++-... ++..+-.+.|.++++.-..++..
T Consensus 350 ~~~~~~liv~a~~gK~~g~~l~a~~~g~~~---------~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~ 420 (832)
T PLN03159 350 WGLLVLVIIMASAGKIMGTIIIAFFYTMPF---------REGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLV 420 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHH
Confidence 1111 11111111334444455555433 7899999888775422 24455566676666666655544
Q ss_pred HHH
Q 036676 195 AAF 197 (413)
Q Consensus 195 a~~ 197 (413)
+++
T Consensus 421 avl 423 (832)
T PLN03159 421 AVA 423 (832)
T ss_pred HHH
Confidence 443
No 66
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=93.06 E-value=0.88 Score=43.44 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=56.1
Q ss_pred hHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHH
Q 036676 55 VIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVC 134 (413)
Q Consensus 55 ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (413)
.+--++.|+++|+.- ++ ..+..+.=..+++.+..|..|.++|++++.+.+.+...+++..+..++..
T Consensus 169 lilpILiGmilGNld----~~---------~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLD----PD---------MRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccc----hh---------hHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 555667777777621 11 12222223334788889999999999999999999999999888888888
Q ss_pred HHHHHHHhhh
Q 036676 135 GIGVAFVLRN 144 (413)
Q Consensus 135 ~~~~~~~~~~ 144 (413)
++.+..+++.
T Consensus 236 ~~~i~rllg~ 245 (312)
T PRK12460 236 NIFADRLVGG 245 (312)
T ss_pred HHHHHHHhCC
Confidence 8888777754
No 67
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=92.68 E-value=11 Score=36.86 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCh--hHH-HHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 036676 30 IVQTTLILVVSRFLAFLFRPLRQPK--VIA-EIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGL 106 (413)
Q Consensus 30 ~~~~~~~l~~~~l~~~l~~r~~iP~--ivg-~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gl 106 (413)
..+..+.+.++...+.++.+.++|. ..| -+++|++.+-.... ...-+.+...+-..+--..|.
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~--------------l~~P~~l~~~~q~ilG~~ig~ 73 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT--------------LPLPRGLFKAGQVILGIMIGA 73 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc--------------ccCChHHHHHHHHHHHHHHhh
Confidence 5677888899999999999988864 445 55666666622111 112255666777777779999
Q ss_pred hcChHHHHh---cCcchhHHHHHHhHHHHHHHHHHHH
Q 036676 107 ELDLSSIRR---SGKRAFVIAFAGISLPFVCGIGVAF 140 (413)
Q Consensus 107 e~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
+++.+.+.. ++.......+.......+.++....
T Consensus 74 ~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r 110 (352)
T COG3180 74 SLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKR 110 (352)
T ss_pred hcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887753 4444443433333334444444333
No 68
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=92.47 E-value=2.5 Score=37.54 Aligned_cols=108 Identities=21% Similarity=0.332 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHH-------HHHHH
Q 036676 31 VQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLL-------FFLFL 103 (413)
Q Consensus 31 ~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~-------~l~F~ 103 (413)
..+.++.-++..+..=+.|=|++..---|+.|+++.-.+ |..... ++...++..++-+++. |-.-.
T Consensus 19 a~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG------~kGlaDi~lfsGiglmGGaMlRDfAIva 91 (254)
T TIGR00808 19 AVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGG------EKGLADIAIFGGFGLMGGAMLRDLAIVA 91 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCC------ccccchhhhhcchhhhhhHHHHHHHHHH
Confidence 334444445555554455558888888899999986321 111110 1122233334333332 22345
Q ss_pred HhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhh
Q 036676 104 VGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNT 145 (413)
Q Consensus 104 ~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (413)
-..|.|.++.||.++.-...-+.+..+||+.+..+.+.+|+.
T Consensus 92 TAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 92 TAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred HhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 677999999999998888878899999999999999999984
No 69
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.40 E-value=2.4 Score=36.51 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhChh--hhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchh-hHHHH
Q 036676 274 LAGVMVSGFMTDLIGIH--SIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAK-SWGLL 350 (413)
Q Consensus 274 l~~~~~~~~~a~~~g~s--~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~-~~~~~ 350 (413)
+.++...+.+.+.+|++ .++|+++++.+++-....+-+.-+...+. ...+.=..+|.+++.+.+.+.. .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~----~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLAL----AQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHH----HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44555666777888875 78899988888774222221222333332 2334557789999987777643 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHH
Q 036676 351 ALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLN 398 (413)
Q Consensus 351 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~ 398 (413)
+...+..+..-...++...+..+.|+.+++.. ..|-|--++....
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La---~~PGGl~~m~~~A 124 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAFLA---TSPGGASEMAALA 124 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCchHHHHHHHH
Confidence 55556666667788888899999999888643 3777776665543
No 70
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.19 E-value=2.4 Score=44.53 Aligned_cols=132 Identities=20% Similarity=0.317 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhh---c--ccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 036676 32 QTTLILVVSRFLAFLF---R--PLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGL 106 (413)
Q Consensus 32 ~~~~~l~~~~l~~~l~---~--r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gl 106 (413)
.+++.++++.+++.+- . .+.+-...|.+++|+++|-. +...+ .++.-+......+.++|+.+.++..|+
T Consensus 390 ~l~l~i~lg~llg~i~~~~g~vp~~lg~~~g~l~~gl~~g~~--~~~~~----~~~~~p~~a~~~l~~~GL~lFla~vG~ 463 (562)
T TIGR03802 390 FLGLGIVLGLLIGAIVVKIGSIPLTLGTGGGALISGLVFGWL--RSKHP----TFGNIPSSASWLLKDLGLALFIAVVGL 463 (562)
T ss_pred hHHHHHHHHHHHheeeeecCCcceeehhhHHHHHHHHHHHHh--cccCC----cceecCHHHHHHHHHHhHHHHHHHHHH
Confidence 3444555556655422 1 24445567899999999863 22221 111123556678999999999999999
Q ss_pred hcChHHH---HhcCcchhHHHHHHhHHHHHHHHHHHH-HhhhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHHHHHh
Q 036676 107 ELDLSSI---RRSGKRAFVIAFAGISLPFVCGIGVAF-VLRNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARILAEL 180 (413)
Q Consensus 107 e~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~il~~~ 180 (413)
+--.+.+ |+.+.+....++.-.++|.++++.+++ +++.+ .....|.+. +-|++|......+..
T Consensus 464 ~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 464 SAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYD-----------PALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHhhccCCCcHHHHHHHHhc
Confidence 9987655 455566666666656666666666663 44432 345555544 668888776665543
No 71
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=92.02 E-value=1.5 Score=47.23 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=49.8
Q ss_pred HhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-H-hCCCchhHHHHHHHhhchhhH
Q 036676 321 SGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAV-M-LKIPARESIVLGVLMNTKGLV 392 (413)
Q Consensus 321 ~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~-~~~~~~~~~~~g~~l~~rg~~ 392 (413)
..+...+--+..|.+++...+.+ .|..+..++......-++.+.+..+ + .+++|..++.+|.+++|...+
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 56667777788999999998877 5655554444443444444444444 4 499999999999999998865
No 72
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=91.86 E-value=9.3 Score=34.78 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHH-
Q 036676 86 TPTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVA- 164 (413)
Q Consensus 86 ~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~- 164 (413)
.+.++++.+- ..+.|..=+--+++.+||++++...-...+..+..+.+.....+++.+ ..+.....
T Consensus 61 ~~~i~~lLgP--AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~-----------~~~~~Sl~P 127 (230)
T COG1346 61 GQWINFLLGP--ATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLS-----------PELILSLLP 127 (230)
T ss_pred cHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------HHHHHHhcc
Confidence 4455555443 455667777789999999999999888888888888888888888764 22233322
Q ss_pred hhhcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 036676 165 LSITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLA 207 (413)
Q Consensus 165 ~s~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~ 207 (413)
-|.|. |+.+.+=++.|-.+.-..-.++-..++..+++-.++.
T Consensus 128 kSvTT-piAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk 169 (230)
T COG1346 128 KSVTT-PIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLK 169 (230)
T ss_pred ccccc-HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25564 6777777776643433334444444444444444444
No 73
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=91.54 E-value=3.4 Score=40.93 Aligned_cols=108 Identities=15% Similarity=0.209 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhhc--ccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcC
Q 036676 32 QTTLILVVSRFLAFLFR--PLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELD 109 (413)
Q Consensus 32 ~~~~~l~~~~l~~~l~~--r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~ 109 (413)
.+.+...++..+....+ .+.+|..++.+++|+++.+.. +..+. + .-+.+..+.+++.++-+.+..+=..++
T Consensus 225 ~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~-~~~~~--~----~id~~~i~~I~~~sL~~fl~~almsl~ 297 (368)
T PF03616_consen 225 LILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNIL-DKTGK--Y----KIDRKTIDRISGISLDLFLAMALMSLK 297 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHH-HHhCc--c----cCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555555555 378999999999999998643 11110 0 125678999999999999988888999
Q ss_pred hHHHHhcCcchhHHHHHHhHHHHHHH-HHHHHHhhhhc
Q 036676 110 LSSIRRSGKRAFVIAFAGISLPFVCG-IGVAFVLRNTI 146 (413)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 146 (413)
+..+.+..-+...+...+.++..... ++..+.++.++
T Consensus 298 l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdy 335 (368)
T PF03616_consen 298 LWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDY 335 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCh
Confidence 99999988777777777777765543 45566777654
No 74
>PRK09903 putative transporter YfdV; Provisional
Probab=91.45 E-value=6.9 Score=37.73 Aligned_cols=117 Identities=21% Similarity=0.148 Sum_probs=66.4
Q ss_pred cCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhH
Q 036676 50 LRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGIS 129 (413)
Q Consensus 50 ~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~ 129 (413)
++.|.+.+. +.|+++.-..+.. |+.-.+.++.+++...-+-||..|..++..+.|+. ++.....+.-.+
T Consensus 171 ~~nP~iia~-~~gl~~~l~~i~l---------P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAP-VLATILVLVGVKI---------PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHH-HHHHHHHHcCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 456777777 5566655332221 23347789999999999999999999887765543 344444444444
Q ss_pred H-HHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhH
Q 036676 130 L-PFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVG 188 (413)
Q Consensus 130 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~ 188 (413)
+ |.+. ...+...+.+ ....-...+.++..+++...++.++-..+.+..
T Consensus 240 ~~P~i~-~~~~~~~~l~----------~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~a 288 (314)
T PRK09903 240 LMPLAL-LLVGMACHLN----------SEHLQMMVLAGALPPAFSGIIIASRFNVYTRTG 288 (314)
T ss_pred HHHHHH-HHHHHHcCCC----------cHHHHHHHHHHcccHHHHHHHHHHHHcccHHHH
Confidence 3 5433 3333333321 233344555555555555555555432344433
No 75
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=91.39 E-value=6.9 Score=37.22 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhc-ccCCCCCCchHHHHHHHHhhhcchHHHH
Q 036676 96 GLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTI-DGLDQVGYGPFLVFMGVALSITAFPVLA 174 (413)
Q Consensus 96 gl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~lg~~~s~ts~~vv~ 174 (413)
-+...+|-.|.++|+|...+..||...+...-+.+.++++..+..++|.+- ..+.- .....+.+-++++.|--+.=.
T Consensus 50 il~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~--~GlS~LAiiaA~~nsNggLY~ 127 (314)
T TIGR00793 50 ILAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFF--AGLSTLALVAAMDMTNGGLYA 127 (314)
T ss_pred HHHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccce--eccHHHHHHHHHhCCcHHHHH
Confidence 356688999999999998887777777777788888888988888887520 00000 113344444455666656666
Q ss_pred HHHHHhcccCchhHH
Q 036676 175 RILAELKLLTTRVGE 189 (413)
Q Consensus 175 ~il~~~~~~~~~~~~ 189 (413)
.+..|++ -+++.|-
T Consensus 128 aL~~qyG-d~~D~gA 141 (314)
T TIGR00793 128 SIMQQYG-TKEEAGA 141 (314)
T ss_pred HHHHHcC-CHhhhhh
Confidence 7777877 3444443
No 76
>PRK04972 putative transporter; Provisional
Probab=91.38 E-value=4.1 Score=42.74 Aligned_cols=135 Identities=16% Similarity=0.232 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHhhcc-----cCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHH
Q 036676 30 IVQTTLILVVSRFLAFLFRP-----LRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLV 104 (413)
Q Consensus 30 ~~~~~~~l~~~~l~~~l~~r-----~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~ 104 (413)
...+++-++++.++|.+.=+ +++-.--|.+++|+++|- ++...+. ++.-+......+.++|+.+.+...
T Consensus 383 ~~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~----~~~~p~~a~~~l~~~GL~lFla~v 456 (558)
T PRK04972 383 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPT----FGYIPQGALNMVKEFGLMVFMAGV 456 (558)
T ss_pred HHHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCC----ceeeCHHHHHHHHHHhHHHHHHHH
Confidence 55667777778888876444 344456689999999985 3333221 112245567789999999999999
Q ss_pred hhhcChHHH---HhcCcchhHHHHHHhHHHHHHHHHHHHHh-hhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHHHHH
Q 036676 105 GLELDLSSI---RRSGKRAFVIAFAGISLPFVCGIGVAFVL-RNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARILAE 179 (413)
Q Consensus 105 Gle~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~il~~ 179 (413)
|++--.+.. ++.+.+....+..-.++|.++++.+++++ .. .....+|.+. +-|+||......+.
T Consensus 457 Gl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~-----------~~~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 457 GLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRM-----------NRALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHhCCCCCcHHHHHHHhh
Confidence 998876554 55566666666666667777777776443 33 2345666544 66887776666544
Q ss_pred hc
Q 036676 180 LK 181 (413)
Q Consensus 180 ~~ 181 (413)
.+
T Consensus 526 ~~ 527 (558)
T PRK04972 526 AR 527 (558)
T ss_pred cC
Confidence 33
No 77
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=90.81 E-value=3.1 Score=40.32 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCh--hHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 036676 30 IVQTTLILVVSRFLAFLFRPLRQPK--VIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLE 107 (413)
Q Consensus 30 ~~~~~~~l~~~~l~~~l~~r~~iP~--ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle 107 (413)
...+..+..++...+.++||+|+|. .+|-++.+.++.-.. ..+ .+..+ .+...+-.++--..|.+
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~--~~~--------~~~P~---~l~~~aqv~iG~~iG~~ 220 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFG--GPS--------FSLPP---WLVNAAQVLIGASIGSR 220 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--CCC--------CCCCH---HHHHHHHHHHHHHHHcc
Confidence 3456677788899999999999885 455555555554321 111 01122 35556666777799999
Q ss_pred cChHHHHhcCcchhHHHHHHhHHHHHHHHHHHH
Q 036676 108 LDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAF 140 (413)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
+|.+.+|+..| ....++.........+....+
T Consensus 221 f~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~ 252 (318)
T PF05145_consen 221 FTRETLRELRR-LLPPALLSTLLLLALCALFAW 252 (318)
T ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999887654 343444443343333333333
No 78
>COG2985 Predicted permease [General function prediction only]
Probab=90.73 E-value=1.8 Score=43.56 Aligned_cols=119 Identities=24% Similarity=0.358 Sum_probs=63.7
Q ss_pred hHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHH---HHhcCcchhHHHHHHhHHH
Q 036676 55 VIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSS---IRRSGKRAFVIAFAGISLP 131 (413)
Q Consensus 55 ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~---l~~~~~~~~~~~~~~~~~~ 131 (413)
..|-+++|..++++.+.+.. +.+.+ |+|+++..+..|+|.-..- +||.+++-..+++.-++.
T Consensus 37 l~g~L~Vgl~l~~~~~~i~~------------~~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~allivi~- 101 (544)
T COG2985 37 LFGVLFVGLFLGQYGFTINT------------DMLHF--ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIVIA- 101 (544)
T ss_pred hhhHhHHHHHhccccccccc------------chhhh--hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHHHH-
Confidence 45566777777776655432 22333 9999999999999998654 467777766665544332
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCc-hHHHHHHHHhhhcchHHHHHHHHHhcccCchhHHHHHHHH
Q 036676 132 FVCGIGVAFVLRNTIDGLDQVGYG-PFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMSAA 195 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~~~~l~~a 195 (413)
+....+.....+ +++.. ....+-|+.-+....+...++++|.+....-..+..++.|
T Consensus 102 ---~~~~a~~l~k~~----~~~~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~~~~~~~~~~gYa 159 (544)
T COG2985 102 ---ALLLAWVLHKLF----GIDLGLIAGMFSGALTSTPGLGAAQDILRELGAPSQALDQMGMGYA 159 (544)
T ss_pred ---HHHHHHHHHhhc----CCCHHHhhhhhcccccCCchhHHHHHHHHhhccchhhhhhhhhhhh
Confidence 233333333322 22110 1222333333333445556677777742222334444443
No 79
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=90.19 E-value=0.096 Score=51.94 Aligned_cols=111 Identities=20% Similarity=0.338 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhChhhhHHHHHHHhhcCCCCCc-hHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHH
Q 036676 277 VMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNF-AERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVIT 355 (413)
Q Consensus 277 ~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~-~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~ 355 (413)
++....+.+++++++.++-.++|+++++.... -++..+..+.+ .++..++.....|.++|.+.+.+ .+.......+
T Consensus 8 ~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~~~~~ 84 (380)
T PF00999_consen 8 AFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRALALGL 84 (380)
T ss_dssp ----------------------------------------S-SS-HHHHS--SSHHHHTTGGGG----------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--cccccccccc
Confidence 34444468999999999999999999983221 01113455655 67778888889999999999887 4544544444
Q ss_pred HHHHHHHHH-HHHHHH---HhCCCchhHHHHHHHhhchh
Q 036676 356 TACAGKILG-TFAVAV---MLKIPARESIVLGVLMNTKG 390 (413)
Q Consensus 356 ~~~~~k~~~-~~~~~~---~~~~~~~~~~~~g~~l~~rg 390 (413)
...+.-... ++.... ..+.++.++...|..+.+-.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 85 VGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp -----------------------------TTHHHHTT--
T ss_pred ceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 444444444 444443 47889999999999887664
No 80
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.02 E-value=4.1 Score=38.66 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCc---hHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhh
Q 036676 270 ICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNF---AERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKS 346 (413)
Q Consensus 270 ~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~---~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~ 346 (413)
....+..++..+.+++.+++||++|=.+||.+.+..++. .+.+...+.++ =..+..+-+|.++.+..+-....
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAel----GViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAEL----GVILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHh----hHHHHHHhcchheeHHHHhhHHH
Confidence 344566788889999999999999999999999864432 34455455444 34566778899998877665433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhh-hccccccc
Q 036676 347 WGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGK-EKKVSFNF 409 (413)
Q Consensus 347 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~-~~gii~~~ 409 (413)
|..--.+. -+..-..-.+-..+..|+++......|++++--+. ++...++ +.+.+|.+
T Consensus 87 iAipgAl~--qia~at~lg~gL~~~lgws~~~glvfGlaLS~aST---VvllraLqEr~lidt~ 145 (408)
T COG4651 87 IAIPGALA--QIALATLLGMGLSSLLGWSFGTGIVFGLALSVAST---VVLLRALEERQLIDTQ 145 (408)
T ss_pred HhcchHHH--HHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHH---HHHHHHHHHhcccccc
Confidence 32111111 11111222334455678888888888887664433 3333444 45566543
No 81
>PRK03818 putative transporter; Validated
Probab=86.57 E-value=10 Score=39.71 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhhccc-------CCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHH
Q 036676 31 VQTTLILVVSRFLAFLFRPL-------RQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFL 103 (413)
Q Consensus 31 ~~~~~~l~~~~l~~~l~~r~-------~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~ 103 (413)
..+++.++++.++|.+-=++ ++-..-|.+++|+++|-. +...+. .+.-+......+.++|+.+.+..
T Consensus 372 ~~l~l~I~lg~llG~i~~~i~g~~~~~~LG~~~G~L~~gl~~g~~--~~~~~~----~~~~p~~a~~~l~~~GL~lFla~ 445 (552)
T PRK03818 372 LPVFIGIGLGVLLGSIPFFIPGFPAALKLGLAGGPLIVALILGRI--GSIGKL----YWFMPPSANLALRELGIVLFLAV 445 (552)
T ss_pred HHHHHHHHHHHhhceeeEecCCCccceeeecchHHHHHHHHHHhc--cCCCCc----eeecCHHHHHHHHHHhHHHHHHH
Confidence 34555666667777653332 233356899999999853 222211 11223556778999999999999
Q ss_pred HhhhcChHHHHh----cCcchhHHHHHHhHHHHHHHHHHHH-HhhhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHH
Q 036676 104 VGLELDLSSIRR----SGKRAFVIAFAGISLPFVCGIGVAF-VLRNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARI 176 (413)
Q Consensus 104 ~Gle~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~i 176 (413)
.|++--.+.+.. .+......+..-.++|.++++.+++ +++.+ .....|.+. +-|++|.....
T Consensus 446 vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~-----------~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 446 VGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMN-----------YLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHhccCCCcHHHHHH
Confidence 999988766653 3455555556555666667766654 34432 345555543 66787766554
No 82
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=84.32 E-value=20 Score=35.47 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--cCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHh
Q 036676 28 LLIVQTTLILVVSRFLAFLFRP--LRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVG 105 (413)
Q Consensus 28 ~~~~~~~~~l~~~~l~~~l~~r--~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~G 105 (413)
.-+..+.+.+.+++.+..+.++ +.+|..+..+.+|+++.+.. ...+. +.-..+..+.+++.++.+.+=.+=
T Consensus 222 ~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~-~~~~~------~~v~~~~v~~ig~vsL~lflamAL 294 (404)
T COG0786 222 ETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL-DLLKK------YRVFRRAVDVIGNVSLSLFLAMAL 294 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH-HHhcc------ccccHHHHHHHhhhHHHHHHHHHH
Confidence 3345556666777777777664 77999999999999998642 11110 012467889999999998887777
Q ss_pred hhcChHHHHhcCcchhHHHHHHhHHHHH-HHHHHHHHhhhhc
Q 036676 106 LELDLSSIRRSGKRAFVIAFAGISLPFV-CGIGVAFVLRNTI 146 (413)
Q Consensus 106 le~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 146 (413)
+++.+-++-+..-....+-..+.++... .-+..+..+|.++
T Consensus 295 mSlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~Y 336 (404)
T COG0786 295 MSLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLMGKNY 336 (404)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 7888888887777777776677666433 3455566777765
No 83
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=83.56 E-value=15 Score=35.96 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=64.8
Q ss_pred HHHHHHhhccc-CCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhh-cChHHHHhcC
Q 036676 40 SRFLAFLFRPL-RQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLE-LDLSSIRRSG 117 (413)
Q Consensus 40 ~~l~~~l~~r~-~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle-~~~~~l~~~~ 117 (413)
-+.+|.+++.+ ++|+.+-+++.|+++-- +|.+++..+ +.....-+++..--...++.-.|+. .|++++-+..
T Consensus 191 ~y~~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~ 264 (347)
T TIGR00783 191 LFMAGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAAL 264 (347)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHh
Confidence 34555555554 78999999999999874 666653210 0112223355555555667778886 8999999877
Q ss_pred -cchhHHHHHHhHHHHHHHHHHHHHhhh
Q 036676 118 -KRAFVIAFAGISLPFVCGIGVAFVLRN 144 (413)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (413)
.+...+.+..++...+.++.+.+++++
T Consensus 265 t~~~vviiv~~Vlg~ii~s~lvGKllG~ 292 (347)
T TIGR00783 265 SWQFVVICLSVVVAMILGGAFLGKLMGM 292 (347)
T ss_pred chhHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 555555566665566667788888875
No 84
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=82.54 E-value=2.4 Score=37.83 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=58.1
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhccc--ccccccch--hhHHHHHHHHHHHHHHHHHHHHHH
Q 036676 293 FGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKT--DVATIRDA--KSWGLLALVITTACAGKILGTFAV 368 (413)
Q Consensus 293 lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~l--d~~~l~~~--~~~~~~~~~~~~~~~~k~~~~~~~ 368 (413)
++++++|+.++...+.+.+..++..+. .+. +.-+.+|+++ |-+.+.+. ..+ ..+.+-+..+++-.+++++.
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~~~~~~~--~L~--lLLF~VGi~lG~~~~~l~~l~~~g~-~~Llipl~tIlGSllgg~l~ 76 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLIDKISTY--ALY--LLLFLVGIDLGSNREILRQLRSLGK-RALLIPLATILGSLLGGLLA 76 (191)
T ss_pred eeeHHHHHHHHHHhcccccccccHHHH--HHH--HHHHHHHHHhcCCHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 456677777765322221122222222 223 3334455555 42222221 123 35566777788899999999
Q ss_pred HHHhCCCchhHHHHHHHhhchhhHHHHHH
Q 036676 369 AVMLKIPARESIVLGVLMNTKGLVELIVL 397 (413)
Q Consensus 369 ~~~~~~~~~~~~~~g~~l~~rg~~~lv~a 397 (413)
.+..+.+.+|+..++.+++=-.--+..++
T Consensus 77 ~~ll~~~~~~~lav~sG~GwYSlsg~~i~ 105 (191)
T PF03956_consen 77 SLLLGLSLKESLAVASGFGWYSLSGVLIT 105 (191)
T ss_pred HHHhcCCHHHHHHHHccCcHHHhHHHHHH
Confidence 99999999999999987765544444443
No 85
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=82.24 E-value=10 Score=38.46 Aligned_cols=72 Identities=22% Similarity=0.373 Sum_probs=52.2
Q ss_pred hhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHhhchhhHHHH
Q 036676 322 GLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVML--KIPARESIVLGVLMNTKGLVELI 395 (413)
Q Consensus 322 ~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~--~~~~~~~~~~g~~l~~rg~~~lv 395 (413)
.++.|+--..-|.++|.+.+.+ .+.....+.....+....+.....++. +.|+.+++..|..++|...+.+.
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~--~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRR--VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 5677777788899999999987 455555444444455555554445554 78888999999999998877654
No 86
>COG2431 Predicted membrane protein [Function unknown]
Probab=81.31 E-value=12 Score=35.14 Aligned_cols=80 Identities=25% Similarity=0.394 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcC---hHHHH-hcCcchhHHHHHHhH
Q 036676 54 KVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELD---LSSIR-RSGKRAFVIAFAGIS 129 (413)
Q Consensus 54 ~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~---~~~l~-~~~~~~~~~~~~~~~ 129 (413)
+..++.+.|+++|-..-++ .+..+...+..+.+++|..|.++. ...-+ .--|+....++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~-------------~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF-------------LNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhccc-------------ccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 5778888899888543221 122555788899999999999988 22211 122666666666665
Q ss_pred HHHHHHHHHHHHhhhhc
Q 036676 130 LPFVCGIGVAFVLRNTI 146 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~ 146 (413)
-..+.+.+....++.++
T Consensus 175 ssliGG~iaa~~l~lpl 191 (297)
T COG2431 175 SSLIGGLIAAFLLDLPL 191 (297)
T ss_pred HHHHHHHHHHHHHhccH
Confidence 56666666666666544
No 87
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=80.65 E-value=49 Score=33.15 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=68.2
Q ss_pred HHHHHHHHhhcc-cCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhh-cChHHHHh
Q 036676 38 VVSRFLAFLFRP-LRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLE-LDLSSIRR 115 (413)
Q Consensus 38 ~~~~l~~~l~~r-~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle-~~~~~l~~ 115 (413)
..-+.+|.+.+| +++|.....++.=+++- .+|++++..+ +...+..+++..--.--+++-.|.. +|++++-+
T Consensus 256 ~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K--~~~lvP~~~e----~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~ 329 (414)
T PF03390_consen 256 CSFYILGVLLSKLIGIHAYAWMIILVAIVK--AFGLVPESLE----EGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIA 329 (414)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH--HhCcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHH
Confidence 334566676666 79999998888877765 3666654221 1134567777777778899999998 99999988
Q ss_pred cCcchhHH-HHHHhHHHHHHHHHHHHHhhh
Q 036676 116 SGKRAFVI-AFAGISLPFVCGIGVAFVLRN 144 (413)
Q Consensus 116 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 144 (413)
.......+ .+..++...+.++.++++++.
T Consensus 330 a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~ 359 (414)
T PF03390_consen 330 AFTPQYVVIVLATVLGAVIGAFLVGKLVGF 359 (414)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 76444433 334444445556777788775
No 88
>COG0679 Predicted permeases [General function prediction only]
Probab=79.63 E-value=60 Score=31.21 Aligned_cols=85 Identities=24% Similarity=0.283 Sum_probs=58.3
Q ss_pred cCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHH-Hh
Q 036676 50 LRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFA-GI 128 (413)
Q Consensus 50 ~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~-~~ 128 (413)
++.|.+.+. +.|+++....+.. |+...+..+.+++...-..++..|..++.+..++..++....+.. -.
T Consensus 166 ~~nP~i~a~-i~g~~~~~~~i~l---------P~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kl 235 (311)
T COG0679 166 LTNPLIIAL-ILGLLLNLLGISL---------PAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKL 235 (311)
T ss_pred HhCcHHHHH-HHHHHHHHcCCCC---------cHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHH
Confidence 457777776 6677776433322 223467799999999999999999999998788777776666555 34
Q ss_pred HHHHHHHHHHHHHhhh
Q 036676 129 SLPFVCGIGVAFVLRN 144 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~ 144 (413)
++.-++.+.+.+.++.
T Consensus 236 l~~Pl~~~~~~~~~~l 251 (311)
T COG0679 236 LLAPLVALLVAKLLGL 251 (311)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4444444445566654
No 89
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=78.88 E-value=12 Score=35.90 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=52.4
Q ss_pred HHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHH
Q 036676 56 IAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCG 135 (413)
Q Consensus 56 vg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (413)
+-.++.|+++|+. .+ +..+.+..-...-+-|+.|..|..+|++.+.|.+-.-..+++..+.++....
T Consensus 175 llP~iiG~iLGNL----D~---------~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DP---------DFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CH---------HHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 4456889998852 11 1233344444556778999999999999999999888888887766666656
Q ss_pred HHHHHHhh
Q 036676 136 IGVAFVLR 143 (413)
Q Consensus 136 ~~~~~~~~ 143 (413)
+.+..++.
T Consensus 242 ~~~dr~i~ 249 (314)
T PF03812_consen 242 YLADRLIL 249 (314)
T ss_pred HHHHHHHc
Confidence 66655543
No 90
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=78.59 E-value=66 Score=31.11 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhCh--hhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchh-h
Q 036676 270 ICLTLAGVMVSGFMTDLIGI--HSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAK-S 346 (413)
Q Consensus 270 ~~~~l~~~~~~~~~a~~~g~--s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~-~ 346 (413)
+......+...+.+++.+++ ..++|+++.+..++......-..-+.+.. ....+.=..+|.++|.+.+.+.. .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~----~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVN----AAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHH----HHHHHHHHHHHccccHHHHHHHHHH
Confidence 34445555666677777776 45777777777765421111111112222 22234456779999877766532 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhc
Q 036676 347 WGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEK 403 (413)
Q Consensus 347 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~ 403 (413)
+...+...+..+..-...++...++.+.|+.+.+.. +.|-|.-++.+.....+.
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La---~aPGGl~eM~l~A~~l~~ 286 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLA---TAPGGLAEMALIALALGA 286 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCccHHHHHHHHHHcCC
Confidence 444455555566667778888889999998887654 478887777665544443
No 91
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=78.27 E-value=20 Score=34.54 Aligned_cols=80 Identities=21% Similarity=0.278 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhhc--ChHHHHhcCcchhHHHHHHhHHHHH---HHHHHHHHhhhhcccCCCCCCchHHHHHHH
Q 036676 89 LESVASIGLLFFLFLVGLEL--DLSSIRRSGKRAFVIAFAGISLPFV---CGIGVAFVLRNTIDGLDQVGYGPFLVFMGV 163 (413)
Q Consensus 89 ~~~l~~lgl~~l~F~~Gle~--~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~ 163 (413)
++.+-+=.+.+.+.++|++- .++++||.++. +...+.+.|.+ ++..+.++.|.+. ..+.+++.
T Consensus 205 ~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~---li~Fgi~~Pli~a~ig~~lg~~~gls~---------Gg~~llav 272 (327)
T PF05982_consen 205 FVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWF---LIAFGILMPLINALIGIGLGWLLGLSP---------GGAVLLAV 272 (327)
T ss_pred hhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHhCCCC---------ccHHHHHH
Confidence 34455556777888888865 34455655554 44455556654 5566666676653 23455554
Q ss_pred HhhhcchHHHHHHHHHhc
Q 036676 164 ALSITAFPVLARILAELK 181 (413)
Q Consensus 164 ~~s~ts~~vv~~il~~~~ 181 (413)
..++. +=+..+.-++..
T Consensus 273 LaASA-SYIAvPAAmR~A 289 (327)
T PF05982_consen 273 LAASA-SYIAVPAAMRAA 289 (327)
T ss_pred HHhhH-hhhhhhHHHHhh
Confidence 33332 234444444444
No 92
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=73.54 E-value=72 Score=29.00 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=50.3
Q ss_pred HHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHHH
Q 036676 99 FFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARIL 177 (413)
Q Consensus 99 ~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~il 177 (413)
.+.+..-+--+++.+||++++.......+..+........+++++.+ .....+.+- |.| +|+..++-
T Consensus 59 tVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~-----------~~~~~Sl~pkSVT-tpiAi~is 126 (215)
T PF04172_consen 59 TVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLS-----------PEIILSLAPKSVT-TPIAIEIS 126 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC-----------HHHHHHHHHHHhh-HHHHHHHH
Confidence 45555566678899999999888888888888877777777777753 234444433 555 47788887
Q ss_pred HHhc
Q 036676 178 AELK 181 (413)
Q Consensus 178 ~~~~ 181 (413)
++.+
T Consensus 127 ~~iG 130 (215)
T PF04172_consen 127 EQIG 130 (215)
T ss_pred HHhC
Confidence 7766
No 93
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=71.82 E-value=28 Score=33.26 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=52.8
Q ss_pred hHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHH
Q 036676 55 VIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVC 134 (413)
Q Consensus 55 ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (413)
.+-.++.|+++|+. ++ +..+.+..-...-.-|..|..|..+|++.+.|.+-.-..+++..+.++-..
T Consensus 174 ~ilPlliG~ilGNL-----D~--------~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 174 AVLPFLVGFALGNL-----DP--------ELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHhcC-----CH--------HHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 34456889988852 11 123333333445567899999999999999998888888888777777666
Q ss_pred HHHHHHHhh
Q 036676 135 GIGVAFVLR 143 (413)
Q Consensus 135 ~~~~~~~~~ 143 (413)
.+....+++
T Consensus 241 ~~~~dr~~~ 249 (314)
T TIGR00793 241 LILADKFIG 249 (314)
T ss_pred HHHHHHHhc
Confidence 666666663
No 94
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=71.67 E-value=49 Score=33.40 Aligned_cols=107 Identities=18% Similarity=0.274 Sum_probs=61.9
Q ss_pred HHHHHHHhChhhhHHHHHHHhhcCCCC----Cch-HHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHH
Q 036676 280 SGFMTDLIGIHSIFGAFVFGLTIPKGG----NFA-ERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVI 354 (413)
Q Consensus 280 ~~~~a~~~g~s~~lgaf~aGl~l~~~~----~~~-~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~ 354 (413)
.+-++..+|++-++--...|++.+.+. ++. .++...+.++ .+...+|+- |+..+++.+... .+......+
T Consensus 22 ~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~l--ALaiILfdg--G~~T~lss~r~a-~~palsLAT 96 (574)
T COG3263 22 SSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNL--ALAIILFDG--GFGTQLSSFRVA-AGPALSLAT 96 (574)
T ss_pred HHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHH--HHHHHhhcC--ccCCcHHHHHHH-hhhhHHHHH
Confidence 344455667766666667777776532 111 2233344443 233334444 566666666652 333222333
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhh
Q 036676 355 TTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGL 391 (413)
Q Consensus 355 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~ 391 (413)
+-.++.-.+.+..+.+.++.+|.|++.+|...+..-.
T Consensus 97 lGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDA 133 (574)
T COG3263 97 LGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDA 133 (574)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccH
Confidence 3334455666777788899999999999998765543
No 95
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=71.13 E-value=51 Score=32.34 Aligned_cols=76 Identities=14% Similarity=0.255 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhH
Q 036676 269 YICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSW 347 (413)
Q Consensus 269 ~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~ 347 (413)
..++.+.+...++.+.- .-.|++|.+..|-.+++ ....+|+.+..+.-..+....+.=..+|.+.+-+.+.+..++
T Consensus 265 KIlFPivv~i~~~ll~P--~a~PLiGmlmfGNllrE-sGVv~rLs~taqn~L~nivTIfLGl~VGa~~~A~~FL~~~tl 340 (433)
T PRK15475 265 KILFPVVLLLLVALLLP--DAAPLLGMFCFGNLMRE-SGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQPQTL 340 (433)
T ss_pred hhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 34444444444443322 34789999999999998 555667766655443454454455788999988777764444
No 96
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=70.61 E-value=54 Score=32.22 Aligned_cols=76 Identities=14% Similarity=0.255 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhH
Q 036676 269 YICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSW 347 (413)
Q Consensus 269 ~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~ 347 (413)
..++.+.+...++.+.- .-.|++|.+..|-.+++ ....+|+.+..+.-..+....+.=..+|.+.+-+.+.+..++
T Consensus 265 KIlFPivv~i~~~ll~P--~a~PLiGmlmfGNllrE-sGVv~rLs~taqn~L~nivTIfLGl~VGa~~~A~~FL~~~tL 340 (433)
T PRK15476 265 KILFPVVLLLLVALLLP--DAAPLLGMFCFGNLMRE-SGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQPQTL 340 (433)
T ss_pred hhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 34444444444443322 34789999999999998 555667766655443454554455788999988777764444
No 97
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=70.52 E-value=54 Score=32.20 Aligned_cols=76 Identities=14% Similarity=0.255 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhH
Q 036676 269 YICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSW 347 (413)
Q Consensus 269 ~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~ 347 (413)
..++.+.+...++.+.- .-.|++|.+..|-.+++ ....+|+.+..+.-..+....+.=..+|.+.+-+.+.+..++
T Consensus 265 KIlFPivv~i~~~ll~P--~a~PLiGmlmfGNllrE-sGVv~rLs~taqn~L~nivTIfLGl~VGa~~~A~~FL~~~tL 340 (433)
T PRK15477 265 KILFPVVLLLLVALLLP--DAAPLLGMFCFGNLMRE-SGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQPQTL 340 (433)
T ss_pred hhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 34444444444443322 34789999999999998 555667766655443454554455788999988777764444
No 98
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=70.28 E-value=60 Score=31.55 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhh
Q 036676 97 LLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRN 144 (413)
Q Consensus 97 l~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (413)
+...+|-.|.++|++...+..|+...+.+.-+.+.++++.++..+++.
T Consensus 53 ~~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 53 LAVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 347788999999999988877777777777777777777777666654
No 99
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=70.07 E-value=63 Score=31.63 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHH
Q 036676 33 TTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSS 112 (413)
Q Consensus 33 ~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~ 112 (413)
+.+...++.+.+.+.+++|+|.. +++..++++-. +|.... .+.+.-+.+..++-.++.-..|.++|...
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~--~ll~~l~l~a~-v~~~~~--------~~~~lP~wl~~va~~~iG~~IG~~f~~~~ 258 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAP--TLLGPLLLGAI-VHFGGG--------ITIQLPAWLLAVAQALIGALIGSRFDRSI 258 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHH-hhcccc--------eeeeCCHHHHHHHHHHHHHHHcccccHHH
Confidence 77778888888999999999974 34444444422 221110 01112222345555677789999999999
Q ss_pred HHhcCcchhHHHHHHhHHHHHHHHHHHHHhhh
Q 036676 113 IRRSGKRAFVIAFAGISLPFVCGIGVAFVLRN 144 (413)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (413)
+++..|.... .+.+.+.-+..+....+++.+
T Consensus 259 l~~~~r~~~~-~~v~ii~l~~~~~~~a~ll~~ 289 (352)
T COG3180 259 LREAKRLLPA-ILVSIIALMAIAAGMAGLLSW 289 (352)
T ss_pred HHHhHhhcch-HHHHHHHHHHHHHHHHHHHHH
Confidence 9876654333 333333333333444444443
No 100
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=68.94 E-value=96 Score=28.54 Aligned_cols=71 Identities=11% Similarity=-0.007 Sum_probs=50.4
Q ss_pred HHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHHH
Q 036676 99 FFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARIL 177 (413)
Q Consensus 99 ~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~il 177 (413)
.+.+..=+--+++.+||+++....-...+..+....+...++++|.+ ..+..+..- |.| +|+.+.+=
T Consensus 75 tVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~-----------~~~~~Sl~pKSVT-tPIAm~is 142 (232)
T PRK04288 75 TIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLD-----------NAVMASMLPQAAT-TAIALPVS 142 (232)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC-----------HHHHHHHhhHhhh-HHHHHHHH
Confidence 34555666678999999999988888888888888888888888763 233333322 555 46777777
Q ss_pred HHhc
Q 036676 178 AELK 181 (413)
Q Consensus 178 ~~~~ 181 (413)
++.+
T Consensus 143 ~~iG 146 (232)
T PRK04288 143 AGIG 146 (232)
T ss_pred HHhC
Confidence 7766
No 101
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=67.55 E-value=1.3e+02 Score=29.60 Aligned_cols=256 Identities=15% Similarity=0.121 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHhh-cccCCChhHHHHHHHHhhchhccCCcchh------hcccC-C------CCchHHHHHHHHH
Q 036676 30 IVQTTLILVVSRFLAFLF-RPLRQPKVIAEIVGGIVLGPSAFGRNKEF------MHHIF-P------KWSTPTLESVASI 95 (413)
Q Consensus 30 ~~~~~~~l~~~~l~~~l~-~r~~iP~ivg~il~GillGp~~l~~~~~~------~~~l~-~------~~~~~~~~~l~~l 95 (413)
-..-.+...++.++-+++ +|-.=|-..--+-+|+++.+.-+...+.. ++... + ..+...++.+-+.
T Consensus 21 ~~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~ 100 (399)
T TIGR03136 21 AITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNF 100 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHH
Confidence 334444555555556654 44566888888999999987543110100 01000 0 0012344444444
Q ss_pred HH------HHHHHHHhhhcChHHHHhcCcchhH-HHHHHh--HHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhh
Q 036676 96 GL------LFFLFLVGLELDLSSIRRSGKRAFV-IAFAGI--SLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALS 166 (413)
Q Consensus 96 gl------~~l~F~~Gle~~~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s 166 (413)
|. .++.+-.|.-.|+.-+-.+.|..+. -+..++ ..++.. ...+|++. .++-.+|.+=.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~~~----A~~lGF~~---------~eAAsIgIIGg 167 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATLVI----GYYCGLTP---------GEAAAVGTIGG 167 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHHHH----HHHcCCCH---------HHhhHHhhccc
Confidence 43 4577788999999999999887776 234443 333322 23445543 55655555433
Q ss_pred hcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 036676 167 ITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTV 246 (413)
Q Consensus 167 ~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 246 (413)
+--|..+.- ..|+.+ |.++-+..+....+ .....+
T Consensus 168 ADGPTaIf~---s~kLAp--------------~Llg~IaVAAYsYM----------------------------aLVPii 202 (399)
T TIGR03136 168 ADGPMVLFA---SLILAK--------------DLFVPISIIAYLYL----------------------------SLTYAG 202 (399)
T ss_pred CCccHHHHH---HHhhhh--------------HhHHHHHHHHHHHH----------------------------HHHhcc
Confidence 322222111 122222 22222212111111 011112
Q ss_pred HHHHHHHHH----hhcCC---CCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHh
Q 036676 247 IRPAMRWVA----RRCSP---EHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDF 319 (413)
Q Consensus 247 ~~~~~~~~~----~~~~~---~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~ 319 (413)
-.+++|.+. |+.+. .++-++....++.+.++..++.+.- .-.|++|++..|-.+++ ... +|+.+..++-
T Consensus 203 qPpimklLttkkER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~P--~a~pLig~Lm~GNllrE-sGv-~rLs~taqn~ 278 (399)
T TIGR03136 203 YPYLIKLLVPKKYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLLP--VASPLILSFFLGVAIKE-AQI-EPYQNLLEKT 278 (399)
T ss_pred cchHHHhhcCHHHHcccCccCCCCCCccchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHH-hCc-HHHHHHHHHH
Confidence 223333332 11110 1122233344545555444444322 34789999999999998 555 7777776655
Q ss_pred hHhhhhhHHHHHhhcccccccccchhhH
Q 036676 320 VSGLLLPLYFASSGLKTDVATIRDAKSW 347 (413)
Q Consensus 320 ~~~~f~plfF~~~G~~ld~~~l~~~~~~ 347 (413)
..+....+.=..+|.+.+-+.+.+..++
T Consensus 279 l~nivTifLGl~vG~t~~A~~FL~~~tl 306 (399)
T TIGR03136 279 LTYGSTLFLGLVLGVLCEASTLLDPRVS 306 (399)
T ss_pred HHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 4555554555889999988887764443
No 102
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=66.41 E-value=25 Score=34.71 Aligned_cols=104 Identities=17% Similarity=0.317 Sum_probs=60.5
Q ss_pred hhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 291 SIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVA 369 (413)
Q Consensus 291 ~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 369 (413)
+++.....|...++..-..++..+.++.+...++.|.. |..++-+.+.+.+.+ .| .......+....-.+.+++..
T Consensus 8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~ 84 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS--LW-FIPVFAFIIFILGLLLGFLLS 84 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh--hH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888877556677888899999899999987 555565555555444 33 333333333333345556666
Q ss_pred HHhCCCchhHH--HHHHHhhchhhHHHHHH
Q 036676 370 VMLKIPARESI--VLGVLMNTKGLVELIVL 397 (413)
Q Consensus 370 ~~~~~~~~~~~--~~g~~l~~rg~~~lv~a 397 (413)
+..+.+.+++. ..+.....-|-+++-+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~N~~~lglpi~ 114 (385)
T PF03547_consen 85 RLFRLPKEWRGVFVLAASFGNTGFLGLPIL 114 (385)
T ss_pred HhcCCCcccceEEEecccCCcchhhHHHHH
Confidence 65665555433 33333445555554443
No 103
>PRK09903 putative transporter YfdV; Provisional
Probab=65.73 E-value=44 Score=32.16 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=53.7
Q ss_pred hhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 291 SIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAV 370 (413)
Q Consensus 291 ~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 370 (413)
|++.....|...++....+|+..+.++++...+..|..-+..-.+.|.+...+ .+... ....+....-++.++..++
T Consensus 11 pif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~ 87 (314)
T PRK09903 11 PIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFA--DTRLT-LVSLVVIVGCFFFSWFGCY 87 (314)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHh--hhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 45556778888888777888889999999999999988777667776554432 22222 2222222333344444443
Q ss_pred -HhCCCchhH
Q 036676 371 -MLKIPARES 379 (413)
Q Consensus 371 -~~~~~~~~~ 379 (413)
..+.+.+++
T Consensus 88 ~~~~~~~~~~ 97 (314)
T PRK09903 88 KFFKRTHAEA 97 (314)
T ss_pred HHhcCCcchh
Confidence 445555444
No 104
>COG2985 Predicted permease [General function prediction only]
Probab=63.47 E-value=72 Score=32.58 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHhhc------ccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHH
Q 036676 30 IVQTTLILVVSRFLAFLFR------PLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFL 103 (413)
Q Consensus 30 ~~~~~~~l~~~~l~~~l~~------r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~ 103 (413)
++-+++.+.++.++|.+-= -+++-..-|.+++|+++|- ++-+++.+ +.-+......+.|+|+.+.+=.
T Consensus 367 lLp~~ig~~LGvllGsIp~~~pg~~s~~LG~aGGpLivaLiLG~--ig~iGpl~----w~mP~~An~~lrelGl~lFLA~ 440 (544)
T COG2985 367 LLPFAIGLGLGVLLGSIPFPLPGPGSFKLGNAGGPLIVALILGF--IGAIGPLT----WFMPPGALLALRELGLALFLAG 440 (544)
T ss_pred cHHHHHHHHHHHhheeeEeccCCCceEeecccccHHHHHHHHHH--hcccCceE----EEcChhHHHHHHHHHHHHHHHh
Confidence 4455556666666665411 1334456688999999984 45554432 2223556778999998887777
Q ss_pred HhhhcChH---HHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHh-hhcchHHHHHHHHH
Q 036676 104 VGLELDLS---SIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVAL-SITAFPVLARILAE 179 (413)
Q Consensus 104 ~Gle~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~-s~ts~~vv~~il~~ 179 (413)
.|++---+ .+-.++-+....+..-.++|.+.++++..+.... ....+.|.+. +-|+||.. ....|
T Consensus 441 VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~km----------n~~~l~G~laGs~T~ppaL-a~and 509 (544)
T COG2985 441 VGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVLKM----------NWLLLCGALAGSMTDPPAL-AFAND 509 (544)
T ss_pred hccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHhc----------cHHHHhhHHhcCCCChHHH-HHHhh
Confidence 77665433 2334555555666666677888888888777653 2345556544 77887754 44455
Q ss_pred hc
Q 036676 180 LK 181 (413)
Q Consensus 180 ~~ 181 (413)
..
T Consensus 510 ~~ 511 (544)
T COG2985 510 AA 511 (544)
T ss_pred cc
Confidence 44
No 105
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=63.45 E-value=1.5e+02 Score=28.76 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhH
Q 036676 269 YICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSW 347 (413)
Q Consensus 269 ~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~ 347 (413)
..++.+.++..++.+.- .-.|++|++..|-.+++ ...-+|+.+..++-..+....+.=..+|.+.+-+.+.+..++
T Consensus 194 Ki~Fpivv~~i~~ll~P--~a~pLig~Lm~GnllrE-sGv~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~~tl 269 (354)
T TIGR01109 194 KILFPIVLLLLVALLIP--KALPLVGMLMFGNLMRE-SGVVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTPQTL 269 (354)
T ss_pred hhHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 34444444444443322 34789999999999998 555566766655544454454455788999988877764443
No 106
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=56.76 E-value=38 Score=29.00 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=50.9
Q ss_pred hHHHHHHHhhcCCCC---CchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchh--h-HHHHHHHHHHHHHHHHHHH
Q 036676 292 IFGAFVFGLTIPKGG---NFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAK--S-WGLLALVITTACAGKILGT 365 (413)
Q Consensus 292 ~lgaf~aGl~l~~~~---~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~--~-~~~~~~~~~~~~~~k~~~~ 365 (413)
.-|++++|+++++.. |...++.+...+..+++...+|...+|.+--.+.+.... . +.......++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 446778888877632 222333334444446677788999999998754443321 2 1222222333344446666
Q ss_pred HHHHHHhCCCchhHH
Q 036676 366 FAVAVMLKIPARESI 380 (413)
Q Consensus 366 ~~~~~~~~~~~~~~~ 380 (413)
+...+.+|+|+....
T Consensus 104 ~~~~~~~~~~~~~~~ 118 (154)
T TIGR01625 104 VALIKLLRINYALTA 118 (154)
T ss_pred HHHHHHhCCCHHHHH
Confidence 777778888875443
No 107
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=54.82 E-value=1.3e+02 Score=25.37 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 036676 27 PLLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGL 106 (413)
Q Consensus 27 ~~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gl 106 (413)
..++.++++++.+..+...+.+-+++|-.-.-+-.-+++.-..++.... +++ ....--.+.++++.|+==..|.
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~~~~vk~--~~v----~~~a~~LL~~m~LfFVPagVGi 80 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLCTKVVKL--EQV----ESLGTALTNNIGFLFVPSGISV 80 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCH--HHH----HHHHHHHHHHHHHHHhhhHhHH
Confidence 3456777777776666555566577663322221112222222343321 000 1111234567777777777888
Q ss_pred hcChHHHHhcCcchhHHHHHHhHHHHHHHH
Q 036676 107 ELDLSSIRRSGKRAFVIAFAGISLPFVCGI 136 (413)
Q Consensus 107 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (413)
=..++.+++++.+.....+.+.++.++...
T Consensus 81 m~~~~ll~~~~~~Il~~ivvSTllvl~vtg 110 (141)
T PRK04125 81 INSLGVMSQYPVQIIGVIIVATILLLACTG 110 (141)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777666666665554443
No 108
>COG3329 Predicted permease [General function prediction only]
Probab=54.49 E-value=71 Score=30.54 Aligned_cols=116 Identities=11% Similarity=0.044 Sum_probs=70.2
Q ss_pred hhhhHHHHHHHhhcCCC---CCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 036676 289 IHSIFGAFVFGLTIPKG---GNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGT 365 (413)
Q Consensus 289 ~s~~lgaf~aGl~l~~~---~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~ 365 (413)
.+|.+.-|..|++.+-. -...+.+.+.+.-. +..-.=.--|+.+..+.+.. .....+.-+.+.++.-++.-
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lsly----LL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~ 89 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALSLY----LLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAY 89 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHHHH----HHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888642 12223222222211 11111123366677767665 34444444555555566666
Q ss_pred HHHHHHhCCCchhHHHHHHHhhchhhHHHHHHHHhhhcccccccc
Q 036676 366 FAVAVMLKIPARESIVLGVLMNTKGLVELIVLNIGKEKKVSFNFL 410 (413)
Q Consensus 366 ~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~~a~~~gii~~~~ 410 (413)
++..+..+.|+.++...+-..+..+.+....|..-++..-+.-|.
T Consensus 90 f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayea 134 (372)
T COG3329 90 FLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEA 134 (372)
T ss_pred HHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHH
Confidence 777777799999999999888888888877776666655444443
No 109
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=53.13 E-value=1.8e+02 Score=26.59 Aligned_cols=85 Identities=12% Similarity=0.200 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhch
Q 036676 310 ERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTK 389 (413)
Q Consensus 310 ~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~r 389 (413)
+.+..-+++-.-.+..|+| =+.+.+.+ +|.....-++++.+.-+.++++.++++|.+.. .. .++.||
T Consensus 62 ~~i~~lLgPAtVAlAvPLY-------kq~~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~--~Sl~Pk 128 (230)
T COG1346 62 QWINFLLGPATVALAVPLY-------KQRHLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LI--LSLLPK 128 (230)
T ss_pred HHHHHHHHHHHHHHhhHHH-------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HH--HHhccc
Confidence 4455555555445556655 13444554 67667667777777788888888999886643 22 335777
Q ss_pred hhHHHHHHHHhhhccccc
Q 036676 390 GLVELIVLNIGKEKKVSF 407 (413)
Q Consensus 390 g~~~lv~a~~a~~~gii~ 407 (413)
+.-.-+...++.+.|-++
T Consensus 129 SvTTpiAm~vs~~iGGip 146 (230)
T COG1346 129 SVTTPIAMEVSESIGGIP 146 (230)
T ss_pred ccccHHHHHHHHhcCCch
Confidence 777666666666666544
No 110
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=50.19 E-value=98 Score=32.55 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=50.8
Q ss_pred HhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCchhHHHHHHHhhchhh
Q 036676 321 SGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVM---------LKIPARESIVLGVLMNTKGL 391 (413)
Q Consensus 321 ~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~---------~~~~~~~~~~~g~~l~~rg~ 391 (413)
..++.|.--.-.|.++|...+.+ ++..++.+.+.+.+.-.+.+....+. .+.++.+++..|..+++...
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 45678888888999999999987 56555555544444433333222221 25689999999999999988
Q ss_pred HHHH
Q 036676 392 VELI 395 (413)
Q Consensus 392 ~~lv 395 (413)
+++.
T Consensus 147 VAVl 150 (559)
T TIGR00840 147 VAVL 150 (559)
T ss_pred HHHH
Confidence 8765
No 111
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=49.25 E-value=2.6e+02 Score=27.24 Aligned_cols=249 Identities=14% Similarity=0.164 Sum_probs=126.9
Q ss_pred HHHHHHHHHhh-cccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHH------HHHHHHHHhhhcC
Q 036676 37 LVVSRFLAFLF-RPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIG------LLFFLFLVGLELD 109 (413)
Q Consensus 37 l~~~~l~~~l~-~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lg------l~~l~F~~Gle~~ 109 (413)
..++.++-+++ +|-.=|-..--+-+|+++.+.-+....+ ..........+..+-+.| =.++.+-.|.-.|
T Consensus 8 i~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~---~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmtD 84 (360)
T PF03977_consen 8 ILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMD---QPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMTD 84 (360)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcc---cccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHHh
Confidence 34444445554 4566788888899999998754322211 000011223344444444 3457778899999
Q ss_pred hHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhHH
Q 036676 110 LSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVGE 189 (413)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~~ 189 (413)
+.-+-.+.|..+.-+..++-+ ...+.....+|++. .++..+|.+=.+=-|..+.- ..|+.
T Consensus 85 FgpllanP~~~llGaaAQ~Gi--f~t~~~A~~lGf~~---------~eAAsIgIIGgADGPtsIf~---s~~LA------ 144 (360)
T PF03977_consen 85 FGPLLANPKTLLLGAAAQFGI--FATFLGAILLGFTP---------KEAASIGIIGGADGPTSIFV---SSKLA------ 144 (360)
T ss_pred hHHHHhCHHHHHHHHHHHHhH--HHHHHHHHHhCCCH---------HHhhHhhhcccCCCcHHHHH---HHhhh------
Confidence 999999988765544444432 12222334445543 55555555433322221111 12212
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcCC--CCC
Q 036676 190 TAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWV----ARRCSP--EHD 263 (413)
Q Consensus 190 ~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~----~~~~~~--~~~ 263 (413)
.|.++-+..+....+ .+...+-.++++-+ .|+.+. .++
T Consensus 145 --------p~LlgpIaVaAYsYM----------------------------aLvPiiqPpimklLttkkeR~I~M~~~r~ 188 (360)
T PF03977_consen 145 --------PHLLGPIAVAAYSYM----------------------------ALVPIIQPPIMKLLTTKKERKIRMKQLRP 188 (360)
T ss_pred --------HHHHHHHHHHHHHHH----------------------------HHHhhhhhHHHHHhcCHHHHhccCCCCCC
Confidence 222222222211110 01111222222222 222221 122
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccc
Q 036676 264 VVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRD 343 (413)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~ 343 (413)
-++.....+.+.+...++.+.- ...|++|++..|-.+++ ....+|+.+..++-..+....+.=..+|.+.+-+.+.+
T Consensus 189 Vsk~ekiiFpivv~~~~~ll~P--~a~pLig~Lm~Gnl~rE-sgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~ 265 (360)
T PF03977_consen 189 VSKTEKIIFPIVVTILVGLLLP--SAAPLIGMLMFGNLLRE-SGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLN 265 (360)
T ss_pred CChHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcC
Confidence 2233444555555444444322 34789999999999998 55666776665554445555455578899998877776
Q ss_pred hhhH
Q 036676 344 AKSW 347 (413)
Q Consensus 344 ~~~~ 347 (413)
..++
T Consensus 266 ~~tl 269 (360)
T PF03977_consen 266 PQTL 269 (360)
T ss_pred HHHH
Confidence 4433
No 112
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=45.54 E-value=50 Score=31.39 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036676 293 FGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVML 372 (413)
Q Consensus 293 lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 372 (413)
+--+..|+.+++..+..++..++++.+....+.-+.+...+.+-+. +.+ ..+. .....++....-+..+|..++..
T Consensus 144 ~vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~liv~~~~~~~~~~--i~~-~~~~-~~~~~~ll~~~~~~~g~~~a~~~ 219 (286)
T TIGR00841 144 LIPVSIGMLVKHKLPQIAKIILKVGLISVFLLSVIIAVVGGINVEN--LAT-IGPL-LLLVGILLPLAGFLLGYLLAKLA 219 (286)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhCchHHHHHHHHHHHHHHHhhHHH--HHH-hhHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346667766653322222233354443222223334444444332 333 1333 23333334455667777778888
Q ss_pred CCCchhHHHHHHHhhchh-hHHHHHHHHhh
Q 036676 373 KIPARESIVLGVLMNTKG-LVELIVLNIGK 401 (413)
Q Consensus 373 ~~~~~~~~~~g~~l~~rg-~~~lv~a~~a~ 401 (413)
|.+.+|+..++...+.|- ..++.++...+
T Consensus 220 ~l~~~~~~t~~~~~g~qN~~lal~la~~~f 249 (286)
T TIGR00841 220 GLPWARCRTISIEVGMQNSQLCSTIAQLSF 249 (286)
T ss_pred CCCHhhheeeeeeeecccHHHHHHHHHHhc
Confidence 888777766655544443 45555555443
No 113
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=42.20 E-value=2.8e+02 Score=25.54 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=48.4
Q ss_pred HHHHHHhhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhH
Q 036676 313 IERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLV 392 (413)
Q Consensus 313 ~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~ 392 (413)
..-+++..-.+..|+| =+.+.+.+ +|...+.-+.++...-+.+++..++.+|.|.. +-.++.||..-
T Consensus 68 ~~lLgPAtVALAvPLY-------~q~~~lk~--~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVT 134 (232)
T PRK04288 68 SFFLEPATIAFAIPLY-------KKRDVLKK--YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAAT 134 (232)
T ss_pred HHHHHHHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhh
Confidence 3344444444555544 12334444 56666666666777778888888888876652 33346788776
Q ss_pred HHHHHHHhhhcccc
Q 036676 393 ELIVLNIGKEKKVS 406 (413)
Q Consensus 393 ~lv~a~~a~~~gii 406 (413)
.-+...++.+.|-+
T Consensus 135 tPIAm~is~~iGG~ 148 (232)
T PRK04288 135 TAIALPVSAGIGGI 148 (232)
T ss_pred HHHHHHHHHHhCCc
Confidence 66666666665543
No 114
>PRK01658 holin-like protein; Validated
Probab=40.99 E-value=2e+02 Score=23.55 Aligned_cols=103 Identities=18% Similarity=0.112 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 036676 28 LLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLE 107 (413)
Q Consensus 28 ~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle 107 (413)
.++.++++++.+..+...+.+-+++|-.-.-+-.=+++.-...+.... +++ +...--.+.++++.|+==..|.=
T Consensus 5 ~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~~~~ik~--~~v----~~~a~~Ll~~m~llFVPa~VGi~ 78 (122)
T PRK01658 5 KLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLSFKILKL--KWI----ELGAETLLAELPLFFIPSAVGVM 78 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCcCH--HHH----HHHHHHHHHHHHHHHHHhhhHHH
Confidence 456777766666666555566566653322211111222222343321 010 11122346777777777788888
Q ss_pred cChHHHHhcCcchhHHHHHHhHHHHHHHH
Q 036676 108 LDLSSIRRSGKRAFVIAFAGISLPFVCGI 136 (413)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (413)
-..+.+++++.+.....+.+.++.++...
T Consensus 79 ~~~~ll~~~~~~il~~ivvsT~l~l~vtg 107 (122)
T PRK01658 79 NYGDFLSSKGISLFLVVVISTFVVMIVTG 107 (122)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889998888777776666666655443
No 115
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=40.96 E-value=2.7e+02 Score=27.15 Aligned_cols=74 Identities=27% Similarity=0.424 Sum_probs=47.6
Q ss_pred HhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHHH
Q 036676 321 SGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVLN 398 (413)
Q Consensus 321 ~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a~ 398 (413)
++++-|+-|.-+|+..|+..+... .+- ..+-...-.+ ...++..+...|++.+|+..+|..=+.-|..++..+.
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 578889999999999999998874 232 2222223333 3345555666788888887777654555555554443
No 116
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=40.19 E-value=53 Score=32.28 Aligned_cols=107 Identities=14% Similarity=0.217 Sum_probs=69.6
Q ss_pred HHHhhcCCC--CCchHHHHHHHHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036676 297 VFGLTIPKG--GNFAERLIERIEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLK 373 (413)
Q Consensus 297 ~aGl~l~~~--~~~~~~~~~~i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 373 (413)
+.|+.+... .-..++-.+.++.++..+|.|.. |.-.|=++.++.+.+ |+..-+-+......-.+.+|+..+..+
T Consensus 25 ~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~---~wfiPVnv~Lt~~ig~liG~lv~~I~r 101 (408)
T KOG2722|consen 25 LVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQ---WWFIPVNVGLTFIIGSLIGWLVVKILR 101 (408)
T ss_pred HHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhheec
Confidence 456666553 23445667778888788999966 888999999999887 445555566666666777888888888
Q ss_pred CCchhHHHHH--HHhhchhhHHH-HHHHHhhhcccc
Q 036676 374 IPARESIVLG--VLMNTKGLVEL-IVLNIGKEKKVS 406 (413)
Q Consensus 374 ~~~~~~~~~g--~~l~~rg~~~l-v~a~~a~~~gii 406 (413)
-|.+++-++- .+.+..|...+ .+..++.+.|..
T Consensus 102 ppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~P 137 (408)
T KOG2722|consen 102 PPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIP 137 (408)
T ss_pred CChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCC
Confidence 8877665432 22344444444 334455554443
No 117
>PRK01821 hypothetical protein; Provisional
Probab=40.06 E-value=2.2e+02 Score=23.74 Aligned_cols=104 Identities=13% Similarity=-0.055 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 036676 27 PLLIVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGL 106 (413)
Q Consensus 27 ~~~~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gl 106 (413)
..++.++++++.+..+...+.+-+++|-.=.-+-.-+++.-...+.... +++ +...--.+.++++.|+==..|.
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~~~vk~--~~v----~~~a~~LL~~m~LfFVPa~VGi 82 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQILPA--KWV----KPGCSLLIRYMALLFVPIGVGV 82 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCH--HHH----HHHHHHHHHHHHHHHhhhHHHH
Confidence 3456677766666666555555577653322211111222222343331 000 1112234677777777778888
Q ss_pred hcChHHHHhcCcchhHHHHHHhHHHHHHHH
Q 036676 107 ELDLSSIRRSGKRAFVIAFAGISLPFVCGI 136 (413)
Q Consensus 107 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (413)
=-..+.+++++.+.....+.+.+++++...
T Consensus 83 m~~~~ll~~~~~~il~~ivvST~lvl~vtg 112 (133)
T PRK01821 83 MQYYDLLRAQFGPIVVSCIVSTLVVLLVVG 112 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777666666666555443
No 118
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=39.08 E-value=4e+02 Score=26.50 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=62.6
Q ss_pred HHHHHHHHHH-HHHHHHhhcc-cCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 036676 30 IVQTTLILVV-SRFLAFLFRP-LRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLE 107 (413)
Q Consensus 30 ~~~~~~~l~~-~~l~~~l~~r-~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle 107 (413)
+...+.++.+ .+.++.+++| +++|.-+.+++.=..+=.. .|..++-.+ +...+.-++++.=-.--+|+..|..
T Consensus 265 ~~g~G~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~-~nlvp~~i~----~GA~~l~~F~sk~~t~~Lm~giGv~ 339 (438)
T COG3493 265 LMGAGMLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKA-ANLVPKEIE----EGAKQLSQFFSKNLTWPLMAGIGVA 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH-hCcCCHHHH----HHHHHHHHHHHHhhHHHHHHhhhhc
Confidence 4444444444 3455666666 6799777444322222121 344432100 1123456667777777799999997
Q ss_pred -cChHHHHhcCcchhHHHHHHhHHH-HHHHHHHHHHhhh
Q 036676 108 -LDLSSIRRSGKRAFVIAFAGISLP-FVCGIGVAFVLRN 144 (413)
Q Consensus 108 -~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 144 (413)
+|++++-+.......+...++++. ...++...++++.
T Consensus 340 ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~ 378 (438)
T COG3493 340 YTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGF 378 (438)
T ss_pred cccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999876544444444444444 4456777777765
No 119
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=38.82 E-value=3.1e+02 Score=25.12 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=49.5
Q ss_pred HHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHH-hhhcchHHHHHHH
Q 036676 99 FFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVA-LSITAFPVLARIL 177 (413)
Q Consensus 99 ~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~-~s~ts~~vv~~il 177 (413)
.+.+..=+--+++.+||++++.......+..+....+...++++|.+ ..+..+.. -|.| +|+.+++-
T Consensus 69 tVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~-----------~~i~~Sl~pkSvT-tpiAm~vs 136 (226)
T TIGR00659 69 VVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLG-----------PEIIASLLPKSVT-TPIAMHVS 136 (226)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC-----------HHHHHHhhhHHhh-HHHHHHHH
Confidence 34555566678999999999888887888888888888888888763 22333332 2555 46777877
Q ss_pred HHhc
Q 036676 178 AELK 181 (413)
Q Consensus 178 ~~~~ 181 (413)
++.+
T Consensus 137 ~~iG 140 (226)
T TIGR00659 137 EMIG 140 (226)
T ss_pred HHhC
Confidence 7766
No 120
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=38.53 E-value=3.6e+02 Score=29.63 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcch--
Q 036676 93 ASIGLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAF-- 170 (413)
Q Consensus 93 ~~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~-- 170 (413)
.++-+-+.....|++.|...+.+.+ ............-++.+...+.+...++ ..++.+|.+++.=..
T Consensus 312 ~~~llPl~~~~~G~k~di~~i~~~~-~~~~~i~~~~~~K~l~t~~~sl~~k~p~---------~~~l~l~~lm~~kgl~e 381 (769)
T KOG1650|consen 312 SGLLLPLYFAISGLKTDISRINKWG-ALIRTILIFGAVKLLSTLGTSLYCKLPL---------RDSLALGLLMSTKGLVE 381 (769)
T ss_pred HHHHHHHHHHhhccceeHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCch---------hHHHHHHHHHHhhhHHH
Confidence 4555666777889999999999822 1112222222223444444455444433 678888887765322
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036676 171 PVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLALA 209 (413)
Q Consensus 171 ~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~ 209 (413)
-++...-+|.|..+.+--.+..-.+.++-.+.-.++...
T Consensus 382 l~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~ 420 (769)
T KOG1650|consen 382 LIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFL 420 (769)
T ss_pred HHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHh
Confidence 334455566665666655555555655555555444443
No 121
>PRK10711 hypothetical protein; Provisional
Probab=36.74 E-value=3.4e+02 Score=24.97 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHH-hhhcchHHHHHH
Q 036676 98 LFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVA-LSITAFPVLARI 176 (413)
Q Consensus 98 ~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~-~s~ts~~vv~~i 176 (413)
.-+.|..=+--+++.+||++++...-...+..+....+...++++|.+ ..+..+.. -|.|. |+.+.+
T Consensus 69 AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~-----------~~~~~Sl~pkSVTt-PIAm~i 136 (231)
T PRK10711 69 AVVALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGAT-----------PEIAASILPKSVTT-PIAMAV 136 (231)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC-----------HHHHHHHhhhhhhH-HHHHHH
Confidence 345555666678999999999888877888888888888888888763 22333332 35554 677777
Q ss_pred HHHhc
Q 036676 177 LAELK 181 (413)
Q Consensus 177 l~~~~ 181 (413)
-++.+
T Consensus 137 s~~iG 141 (231)
T PRK10711 137 GGSIG 141 (231)
T ss_pred HHHhC
Confidence 77765
No 122
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=32.88 E-value=1.4e+02 Score=29.59 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhcChHHHHhcCcchhHHHH
Q 036676 94 SIGLLFFLFLVGLELDLSSIRRSGKRAFVIAF 125 (413)
Q Consensus 94 ~lgl~~l~F~~Gle~~~~~l~~~~~~~~~~~~ 125 (413)
.-++.+.++..|.+.|++++++..+|....++
T Consensus 116 ~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l 147 (371)
T KOG2718|consen 116 PPGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL 147 (371)
T ss_pred ccHHHHHHHHHhcCccHHHHhhHhhCCcceee
Confidence 37788999999999999999998888776544
No 123
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=31.32 E-value=4.7e+02 Score=25.00 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHhhcCCCCCchHHHHHHHHHhhHhhhhhHHHHHhhcccccccccchhhHH
Q 036676 289 IHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWG 348 (413)
Q Consensus 289 ~s~~lgaf~aGl~l~~~~~~~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~~~~~ 348 (413)
..|++|.+..|=.+++ ....+|+.+.-+.-.-++...+.=..+|.+.+-+.+.+..++.
T Consensus 227 a~PLvGmlmfGNL~rE-~GVv~RLs~taqn~linivTI~LgLsVGsk~~ad~FL~~~tL~ 285 (375)
T COG1883 227 AAPLVGMLMFGNLLRE-SGVVERLSDTAQNELINIVTIFLGLSVGSKMRADKFLTPQTLG 285 (375)
T ss_pred hhHHHHHHHHhHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcCCHHHHH
Confidence 4789999999999998 6666777665544434455555567889999888887754554
No 124
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=30.24 E-value=5.5e+02 Score=25.43 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=46.7
Q ss_pred hhHhhhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhchhhHHHHHH
Q 036676 319 FVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARESIVLGVLMNTKGLVELIVL 397 (413)
Q Consensus 319 ~~~~~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~rg~~~lv~a 397 (413)
+.++++-|+-|.-+|+..|+..+...+ + ..+..-...-.+-+ .++..+...|++.+|+..+|..=+.-|..++..+
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP-~-~~ll~gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARP-W-ASITVALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhCh-H-HHHHHHHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 346788999999999999999988742 2 11111223333333 3445555667877777777765444555544443
No 125
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=29.22 E-value=2e+02 Score=25.06 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=47.9
Q ss_pred hhhHHHHHHHhhcCCCCCc-hHHHHHHHHHhhHhhhhhHHHHHhhcccccccccch--hhHHHHHHHHHHHHHHHHHHHH
Q 036676 290 HSIFGAFVFGLTIPKGGNF-AERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDA--KSWGLLALVITTACAGKILGTF 366 (413)
Q Consensus 290 s~~lgaf~aGl~l~~~~~~-~~~~~~~i~~~~~~~f~plfF~~~G~~ld~~~l~~~--~~~~~~~~~~~~~~~~k~~~~~ 366 (413)
...-|+.+.|+++++..+. +........+..+++...+|-..+|.+.-++.+... ..+...+ +-++....-.+.++
T Consensus 24 G~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~-~~~~i~~~~~~~~~ 102 (169)
T PF06826_consen 24 GAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLL-LGVIITLVPLLIAL 102 (169)
T ss_pred cccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHH
Confidence 3344667777777653211 000233444444667778899999999875444321 2333332 23333333445555
Q ss_pred HHHH-HhCCCchhHH
Q 036676 367 AVAV-MLKIPARESI 380 (413)
Q Consensus 367 ~~~~-~~~~~~~~~~ 380 (413)
..++ ++|.|+.+..
T Consensus 103 ~~~~~~~~l~~~~~~ 117 (169)
T PF06826_consen 103 VIGRYLFKLNPGIAA 117 (169)
T ss_pred HHHHHHcCCCHHHHH
Confidence 5555 7887765544
No 126
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=27.40 E-value=5.9e+02 Score=24.83 Aligned_cols=62 Identities=23% Similarity=0.425 Sum_probs=41.0
Q ss_pred hcccCCChhHHHHHHHHhhchhccCCcchhhcccCCCCchHHHHHHHHHHHHHHHHHHhhhcChHHHH
Q 036676 47 FRPLRQPKVIAEIVGGIVLGPSAFGRNKEFMHHIFPKWSTPTLESVASIGLLFFLFLVGLELDLSSIR 114 (413)
Q Consensus 47 ~~r~~iP~ivg~il~GillGp~~l~~~~~~~~~l~~~~~~~~~~~l~~lgl~~l~F~~Gle~~~~~l~ 114 (413)
.+.++-|.+.+. +.|++++-..... +..+|..-.+.++.+++...-+.+|..|..+..+..+
T Consensus 239 ~~~~~nP~~~a~-~lgli~~~~~~~~-----~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~ 300 (385)
T PF03547_consen 239 LKLFKNPPLIAI-ILGLIIGLIPPLR-----PLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRK 300 (385)
T ss_pred HHHHhCcHHHHH-HHHHHHHHHHHhc-----ccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcc
Confidence 444677777766 6778777432211 1111122357789999999999999999998866544
No 127
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=27.37 E-value=3.8e+02 Score=22.61 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=20.2
Q ss_pred hhHHHHHhhc--ccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 036676 325 LPLYFASSGL--KTDVATIRDAKSWGLLALVITTACAGKILGTFAV 368 (413)
Q Consensus 325 ~plfF~~~G~--~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~ 368 (413)
+++||+=+|. --.++.+.+ +.|...+.+++..++.=...++..
T Consensus 69 m~LfFVPagVGim~~~~ll~~-~~~~Il~~ivvSTllvl~vtg~v~ 113 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQ-YPVQIIGVIIVATILLLACTGLFS 113 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678855544 445655655 244433333333333333434433
No 128
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=26.46 E-value=6.1e+02 Score=24.67 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHh
Q 036676 96 GLLFFLFLVGLELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVL 142 (413)
Q Consensus 96 gl~~l~F~~Gle~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (413)
-+-+-.|.-|..+|.+++.+.+.+...+++..++.+....+....++
T Consensus 204 lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 204 LIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred EHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 34445666899999999999988888888877777766666655555
No 129
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=25.72 E-value=4.7e+02 Score=23.10 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q 036676 350 LALVITTACAGKILGTFAVAVMLKI 374 (413)
Q Consensus 350 ~~~~~~~~~~~k~~~~~~~~~~~~~ 374 (413)
..+.++...++-+++++++.+..++
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667778889988887654
No 130
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=25.35 E-value=6.3e+02 Score=25.57 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=18.3
Q ss_pred HHHHhhHhhhhhHHHHHhhccccc
Q 036676 315 RIEDFVSGLLLPLYFASSGLKTDV 338 (413)
Q Consensus 315 ~i~~~~~~~f~plfF~~~G~~ld~ 338 (413)
.++..+++-++.+||..+|+++.-
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKr 84 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKR 84 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhH
Confidence 344445677899999999999953
No 131
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.09 E-value=92 Score=31.54 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhchh
Q 036676 30 IVQTTLILVVSRFLAFLFRPLRQPKVIAEIVGGIVLGPS 68 (413)
Q Consensus 30 ~~~~~~~l~~~~l~~~l~~r~~iP~ivg~il~GillGp~ 68 (413)
.+++.+.+.++.+ |++.||++.|.. -++.|+++||.
T Consensus 411 ~fDv~~~~~fG~l-gY~~~kl~~p~a--PllLg~VLGpl 446 (504)
T COG3333 411 VFDVYLMLGFGLL-GYLLRKLGFPLA--PLLLGFVLGPL 446 (504)
T ss_pred HHHHHHHHHHHHH-HHHHHHcCCCch--HHHHHHHhhHH
Confidence 4466666666654 999999999965 56889999985
No 132
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=24.22 E-value=5.3e+02 Score=23.24 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 134 CGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAI 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~ 212 (413)
+++....++|.. ... ...-++|-..|+| +++..+-++.| .+.+..+.......+.+..+++=..++..+
T Consensus 9 ~gYia~r~~G~r------~Gl-~ltg~~GGlvSST--A~t~~la~~~r-~~p~~~~~~~~~i~lA~~~m~~R~l~iv~i 77 (211)
T PF13194_consen 9 AGYIAVRLLGPR------RGL-LLTGLLGGLVSST--ATTVSLARRSR-ENPELSRLLAAGILLASAVMFVRVLLIVAI 77 (211)
T ss_pred HHHHHHHHHccc------chH-HHHHHHHHHHHHH--HHHHHHHHHHh-hCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666642 122 3444555555555 45666666666 355566767777777777777655554443
No 133
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=23.77 E-value=4.8e+02 Score=22.51 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=12.8
Q ss_pred hhHHHHHHHHhhchhc
Q 036676 54 KVIAEIVGGIVLGPSA 69 (413)
Q Consensus 54 ~ivg~il~GillGp~~ 69 (413)
.-+..+++|+++||..
T Consensus 34 ~~i~~vlaavllGP~~ 49 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWY 49 (160)
T ss_pred hHHHHHHHHHHHchHH
Confidence 4577889999999953
No 134
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=23.71 E-value=7.8e+02 Score=24.99 Aligned_cols=112 Identities=9% Similarity=0.018 Sum_probs=58.2
Q ss_pred HHHhcccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036676 177 LAELKLLTTRVGETAMSAAAFNDVAA-WILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVA 255 (413)
Q Consensus 177 l~~~~~~~~~~~~~~l~~a~~~D~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 255 (413)
+||.+ .++++-.-+.+...++|.+. ++.++...+.+..+ .+...... ++...- +....+..+..++.
T Consensus 245 ~k~i~-~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~g-------ls~~~lll-~g~~~~---vvA~lg~ii~g~Ld 312 (438)
T COG2270 245 FKEIR-GRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLG-------LSSTELLL-IGIALS---VVAALGAIIAGFLD 312 (438)
T ss_pred HHHHh-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-------ccHHHHHH-HHHHHH---HHHHHHHHHHHHHH
Confidence 55666 35688888999999999984 45555555543333 22222211 111111 11233444555777
Q ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCC
Q 036676 256 RRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPK 304 (413)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~ 304 (413)
+|.. .+ +.....+.+......+.....-..+..+.+.+.|..++.
T Consensus 313 ~rfg--~k--~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~ 357 (438)
T COG2270 313 ERFG--SK--PVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGG 357 (438)
T ss_pred HHhC--Cc--eeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcch
Confidence 7764 11 112222222222333333444466777777888887765
No 135
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=22.66 E-value=5.4e+02 Score=22.72 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=25.8
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhhcchHHHHHHHHHh
Q 036676 124 AFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAEL 180 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~s~ts~~vv~~il~~~ 180 (413)
+....+...+....++.+++..+ +.+. ..+++...-.+.-+.-++..-++|.
T Consensus 60 aii~l~~dv~i~l~~~~~~~~~l----~l~~-iaall~~iG~sVd~~IVifdRIre~ 111 (189)
T PF02355_consen 60 AIIALIHDVLITLGIFSLFGIEL----TLPS-IAALLTIIGYSVDDNIVIFDRIREE 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-EE-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcc----cHHH-HHHHHHHHHHHHhcceeehHHHHHH
Confidence 33333333445555556666544 1111 3444554555666666666666665
No 136
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=21.49 E-value=6.6e+02 Score=23.34 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=12.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhcccCC
Q 036676 23 DFAFPLLIVQTTLILVVSRFLAFLFRPLRQ 52 (413)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~l~~~l~~r~~i 52 (413)
+|+......++++.+.+..+.-.+.+|.|+
T Consensus 2 ~~~~v~l~~~l~~a~~lv~i~~~is~~~~L 31 (250)
T PF03649_consen 2 EHSIVNLWLQLALALLLVLIAIAISYRLRL 31 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344333344555444433333444444333
No 137
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=21.45 E-value=2.8e+02 Score=27.53 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=18.7
Q ss_pred HHHHhhHhhhhhHHHHHhhccccc
Q 036676 315 RIEDFVSGLLLPLYFASSGLKTDV 338 (413)
Q Consensus 315 ~i~~~~~~~f~plfF~~~G~~ld~ 338 (413)
.+++-+++-++.+||..+|.+++-
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKr 78 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKR 78 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445677899999999999973
No 138
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.06 E-value=2.6e+02 Score=24.28 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=24.2
Q ss_pred hcChHHHHhcCcchhHHHHHHhHH-HHHHHHHHHHHhhh
Q 036676 107 ELDLSSIRRSGKRAFVIAFAGISL-PFVCGIGVAFVLRN 144 (413)
Q Consensus 107 e~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 144 (413)
++|.+.-||+.+++.......+++ +..++.+.-.+||.
T Consensus 5 ~idk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~ 43 (165)
T PF11286_consen 5 EIDKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGG 43 (165)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 577788888887777665555444 45555555556653
No 139
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=20.97 E-value=8.7e+02 Score=24.54 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 036676 197 FNDVAAWILLALAVAIAGD 215 (413)
Q Consensus 197 ~~D~~~~~~~~i~~~~~~~ 215 (413)
=++++.++++++..+++-.
T Consensus 147 ~gnvL~vIvFai~~GiAl~ 165 (428)
T PRK01663 147 SGDILQVLLFAVLFGFALA 165 (428)
T ss_pred cCChHHHHHHHHHHHHHHH
Confidence 3478899999998886543
No 140
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=20.92 E-value=2.2e+02 Score=29.79 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=39.4
Q ss_pred hhhhHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-------HHhCCCchhHHHHHHHhhchhhHHHH
Q 036676 323 LLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVA-------VMLKIPARESIVLGVLMNTKGLVELI 395 (413)
Q Consensus 323 ~f~plfF~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~-------~~~~~~~~~~~~~g~~l~~rg~~~lv 395 (413)
.+.|---.-.|.+++...+.+ +.......-+.+...-........ ...+++++|.+..|..+...=.|..+
T Consensus 104 vLLPpiif~sgy~l~k~~fF~--n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvL 181 (575)
T KOG1965|consen 104 VLLPPIIFNSGYSLKKKQFFR--NIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVL 181 (575)
T ss_pred Hhhchhhhcccceechhhhhh--hhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHH
Confidence 444544566799999888877 343332222221111111111111 22478999999999987766555544
Q ss_pred H
Q 036676 396 V 396 (413)
Q Consensus 396 ~ 396 (413)
-
T Consensus 182 a 182 (575)
T KOG1965|consen 182 A 182 (575)
T ss_pred H
Confidence 3
No 141
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=20.88 E-value=2.3e+02 Score=28.55 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=18.6
Q ss_pred HHHHhhHhhhhhHHHHHhhcccccc
Q 036676 315 RIEDFVSGLLLPLYFASSGLKTDVA 339 (413)
Q Consensus 315 ~i~~~~~~~f~plfF~~~G~~ld~~ 339 (413)
.++..+++-++.+||..+|+++.-+
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE 86 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRE 86 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456678999999999999733
Done!