Query 036676
Match_columns 413
No_of_seqs 127 out of 1121
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 2.1E-21 7E-26 188.3 16.9 275 87-405 58-354 (388)
2 3zux_A Transporter, ASBTNM; tr 97.7 0.018 6.3E-07 54.7 25.4 107 92-214 44-156 (332)
3 2l0e_A Sodium/hydrogen exchang 92.9 0.026 8.8E-07 34.0 0.7 26 156-181 4-29 (33)
4 2k3c_A TMIX peptide; membrane 61.3 0.54 1.9E-05 28.1 -2.2 26 280-305 6-31 (33)
5 2htg_A NHE-1, NHE1 isoform of 44.6 0.46 1.6E-05 27.2 -4.2 24 183-206 2-25 (28)
6 3zux_A Transporter, ASBTNM; tr 32.1 2.8E+02 0.0095 25.5 10.2 76 323-398 47-124 (332)
7 2zy9_A Mg2+ transporter MGTE; 9.4 6.4E+02 0.022 24.2 7.3 35 171-207 428-463 (473)
8 1hgv_A PH75 inovirus major coa 8.1 2.6E+02 0.0087 17.0 2.2 32 86-117 13-44 (46)
9 4b19_A PEPA1; toxin, toxin apo 6.9 3.9E+02 0.013 15.3 2.5 18 242-259 12-29 (30)
10 4ev6_A Magnesium transport pro 6.8 1E+03 0.035 21.4 7.1 32 311-343 277-311 (339)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.87 E-value=2.1e-21 Score=188.29 Aligned_cols=275 Identities=18% Similarity=0.193 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHH----HhcCc--chhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHH
Q 036676 87 PTLESVASIGLLFFLFLVGLELDLSSI----RRSGK--RAFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVF 160 (413)
Q Consensus 87 ~~~~~l~~lgl~~l~F~~Gle~~~~~l----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (413)
+..+.+.+-.+.+.+|.+|+|+|.+.+ |+.+| .....++.++++|+++. ..++... .++..
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy----~~~~~~~---------~~~~~ 124 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLY----LAFNYAD---------PITRE 124 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH----GGGCCSS---------TTHHH
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHH----HHHhcCC---------hhhhh
Confidence 456779999999999999999999977 55544 36778889999999873 2233211 34556
Q ss_pred HHHHhhhcchHHHHHHHHHhc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH
Q 036676 161 MGVALSITAFPVLARILAELK-LLTTRVGETAMSAAAFNDVAAWILLALAVAIAGDGTASGGEKKSPVIAIWVLLSGLAF 239 (413)
Q Consensus 161 lg~~~s~ts~~vv~~il~~~~-~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
-..+.++||.+....++...+ +.++..++.+++.+++||+.+++++++.+. .+ .+.... ....+.
T Consensus 125 gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-------~~~~~l----~~~~~~ 190 (388)
T 1zcd_A 125 GWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-------LSMASL----GVAAVA 190 (388)
T ss_dssp HTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-------CCHHHH----HHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-------ccHHHH----HHHHHH
Confidence 666778999999999999976 356677899999999999999999998852 11 222211 111111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHhhcCCCC----CchHHHHHH
Q 036676 240 VIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGG----NFAERLIER 315 (413)
Q Consensus 240 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~----~~~~~~~~~ 315 (413)
. .. ..++.|+.. ++......+ .+.+.+.++..|+|+.+|+|++|+++|+.. +..++++++
T Consensus 191 ~-----~~---~~~l~r~~v------~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~ 254 (388)
T 1zcd_A 191 I-----AV---LAVLNLCGA------RRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHV 254 (388)
T ss_dssp H-----HH---HHHHHHTTC------CCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHH
T ss_pred H-----HH---HHHHHHhcc------hhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHH
Confidence 1 11 112222221 112222223 234456679999999999999999999842 346889999
Q ss_pred HHHhhHhhhhhHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHH
Q 036676 316 IEDFVSGLLLPLY-FASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVML----------KIPARESIVLGV 384 (413)
Q Consensus 316 i~~~~~~~f~plf-F~~~G~~ld~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~~~~g~ 384 (413)
+++....++.|+| |+..|.++|....... .-...+.+.+..+++|.++++..++.. |.+|||...+|+
T Consensus 255 l~p~v~~~ilPlFaFanaGv~l~~~~~~~l-~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~ 333 (388)
T 1zcd_A 255 LHPWVAYLILPLFAFANAGVSLQGVTLDGL-TSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGI 333 (388)
T ss_dssp HHHHHHHTHHHHHHHHHCCCCCSSSCCCTH-HHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcCeeecccchhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHH
Confidence 9999888999999 9999999998533221 111122345556899999966666555 899999999999
Q ss_pred HhhchhhHHHHHHHHhhhccc
Q 036676 385 LMNTKGLVELIVLNIGKEKKV 405 (413)
Q Consensus 385 ~l~~rg~~~lv~a~~a~~~gi 405 (413)
.++.+++++++++.++++.+.
T Consensus 334 L~gigftmsL~Ia~laf~~~~ 354 (388)
T 1zcd_A 334 LCGIGFTMSIFIASLAFGSVD 354 (388)
T ss_dssp HTTCCHHHHHHHHHHHSTTSS
T ss_pred HhccchHHHHHHHHHhccCCc
Confidence 999999999999999998876
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.73 E-value=0.018 Score=54.73 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhhhcChHHHHhcCcc---hhHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHh---
Q 036676 92 VASIGLLFFLFLVGLELDLSSIRRSGKR---AFVIAFAGISLPFVCGIGVAFVLRNTIDGLDQVGYGPFLVFMGVAL--- 165 (413)
Q Consensus 92 l~~lgl~~l~F~~Gle~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~~~--- 165 (413)
....++.+++|..|++++.+++|+..|+ .......+.++.=.+++.+...++.+ .....|.++
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~-----------~~~~~Glil~~~ 112 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLP-----------AEIAVGVILVGC 112 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------hHHHHHHHHHhc
Confidence 4567888999999999999999964443 33333344433223344444444321 122333322
Q ss_pred hhcchHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036676 166 SITAFPVLARILAELKLLTTRVGETAMSAAAFNDVAAWILLALAVAIAG 214 (413)
Q Consensus 166 s~ts~~vv~~il~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~i~~~~~~ 214 (413)
+++... ..++.+. .+++. ........++++.+.+...+...+..
T Consensus 113 ~P~~~~--s~v~t~~--a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 113 CPGGTA--SNVMTYL--ARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp SCCCTH--HHHHHHH--TTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhH--HHHHHHH--hCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 232221 1222222 23433 46777888899999888887776554
No 3
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=92.94 E-value=0.026 Score=34.00 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhhcchHHHHHHHHHhc
Q 036676 156 PFLVFMGVALSITAFPVLARILAELK 181 (413)
Q Consensus 156 ~~~l~lg~~~s~ts~~vv~~il~~~~ 181 (413)
..++++|+++|+|||..+..+++|.+
T Consensus 4 ~~~llfGAiis~TDpVavlaif~~~~ 29 (33)
T 2l0e_A 4 KDNLLFGSIISAVDPVAVLAVFEEIH 29 (33)
T ss_dssp CCCCTTHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCChHHHHHHHHHcC
Confidence 56889999999999999999999988
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=61.34 E-value=0.54 Score=28.12 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=22.7
Q ss_pred HHHHHHHhChhhhHHHHHHHhhcCCC
Q 036676 280 SGFMTDLIGIHSIFGAFVFGLTIPKG 305 (413)
Q Consensus 280 ~~~~a~~~g~s~~lgaf~aGl~l~~~ 305 (413)
.+..+|.+|.|++++.+.+|+.+++.
T Consensus 6 ~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 6 AYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 45678999999999999999999873
No 5
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=44.60 E-value=0.46 Score=27.22 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHH
Q 036676 183 LTTRVGETAMSAAAFNDVAAWILL 206 (413)
Q Consensus 183 ~~~~~~~~~l~~a~~~D~~~~~~~ 206 (413)
.++++-.++.++|++||..+++++
T Consensus 2 V~~~L~~lvfGESllNDavaiVlf 25 (28)
T 2htg_A 2 INELLHILVFGESLLNDAVTVVLY 25 (28)
T ss_dssp CSSTTHHHHTTTTTTTTTTTTTTT
T ss_pred CCceEEEEEEeeeeecccEEEEEE
Confidence 467788899999999999887765
No 6
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=32.05 E-value=2.8e+02 Score=25.54 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=42.0
Q ss_pred hhhhHHHHHhhcccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH-HHHHhhchhhHHHHHHH
Q 036676 323 LLLPLYFASSGLKTDVATIRDAK-SWGLLALVITTACAGKILGTFAVAVMLKIPARESIV-LGVLMNTKGLVELIVLN 398 (413)
Q Consensus 323 ~f~plfF~~~G~~ld~~~l~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~g~~l~~rg~~~lv~a~ 398 (413)
....+-+...|++++.+++.+.. .+.......+...+..++.++..++.++.+...+.- +=.+.+|-|..+.+++.
T Consensus 47 ~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~ 124 (332)
T 3zux_A 47 WLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTY 124 (332)
T ss_dssp HHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHH
Confidence 45556777888888888876421 343333444555666667777777766655432221 11122555555555443
No 7
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=9.42 E-value=6.4e+02 Score=24.24 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=18.4
Q ss_pred HHHHHHH-HHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 036676 171 PVLARIL-AELKLLTTRVGETAMSAAAFNDVAAWILLA 207 (413)
Q Consensus 171 ~vv~~il-~~~~~~~~~~~~~~l~~a~~~D~~~~~~~~ 207 (413)
+...+++ ++.| .+.....- --.+.+.|+++++++.
T Consensus 428 g~~~p~~~~~~~-~DPa~~s~-p~itt~~D~~g~~~~~ 463 (473)
T 2zy9_A 428 GAMLPFLLRRLG-VDPALVSN-PLVATLSDVTGLLIYL 463 (473)
T ss_dssp HTTHHHHHHHHT-CCGGGSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCcccccc-chHHHHHHHHHHHHHH
Confidence 4444544 4445 34444332 2356677888765554
No 8
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=8.10 E-value=2.6e+02 Score=17.03 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcChHHHHhcC
Q 036676 86 TPTLESVASIGLLFFLFLVGLELDLSSIRRSG 117 (413)
Q Consensus 86 ~~~~~~l~~lgl~~l~F~~Gle~~~~~l~~~~ 117 (413)
.+++..+..-|+..+....|++-.++.-||..
T Consensus 13 ~~yi~~iaaagvgvlal~iglsaaw~ya~rfl 44 (46)
T 1hgv_A 13 TNYIQAIAAAGVGVLALAIGLSAAWKYAKRFL 44 (46)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccchHHHHHHhHHHHHHHHHHHh
Confidence 34567788888999999999988877777654
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=6.90 E-value=3.9e+02 Score=15.26 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 036676 242 FMLTVIRPAMRWVARRCS 259 (413)
Q Consensus 242 ~~~~v~~~~~~~~~~~~~ 259 (413)
+.+++...+-.|+.+|.+
T Consensus 12 isGcivalF~hWL~~r~~ 29 (30)
T 4b19_A 12 ISGCAIAFFSYWLSRRNT 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 345666777889887764
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=6.80 E-value=1e+03 Score=21.42 Aligned_cols=32 Identities=3% Similarity=0.174 Sum_probs=20.7
Q ss_pred HHHHHHHHhhHhhhhhHHH--HHhhcccc-cccccc
Q 036676 311 RLIERIEDFVSGLLLPLYF--ASSGLKTD-VATIRD 343 (413)
Q Consensus 311 ~~~~~i~~~~~~~f~plfF--~~~G~~ld-~~~l~~ 343 (413)
+..+.+.-+ ..+|.|.-| ...||+++ .+...+
T Consensus 277 ~~mk~LTii-t~IflP~T~IaGiyGMNf~~mPel~~ 311 (339)
T 4ev6_A 277 QIMKILTMV-TTIFAVPMWITGIYGMNFSYLPLANN 311 (339)
T ss_dssp HHHHHHHHH-HHHSSHHHHHHHHTTCCCSCCTTSSC
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhccCcCCCCCCccC
Confidence 344555544 677887777 57899997 455554
Done!