Query 036676
Match_columns 413
No_of_seqs 127 out of 1121
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 06:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036676.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036676hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 8.5 2.6E+02 0.019 18.0 5.5 10 281-290 57-66 (86)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 7.7 47 0.0035 29.4 0.5 32 160-192 261-292 (405)
3 d2nwwa1 f.49.1.1 (A:12-416) Pr 7.4 2E+02 0.014 24.9 4.8 38 107-144 61-98 (405)
4 d1e0ea_ a.4.10.1 (A:) N-termin 3.0 2.1E+02 0.015 16.6 0.9 14 45-58 21-34 (46)
5 d1cola_ f.1.1.1 (A:) Colicin A 2.7 7.7E+02 0.056 18.8 4.4 31 34-64 145-179 (197)
6 d1qpza1 a.35.1.5 (A:2-58) Puri 2.5 6.3E+02 0.046 14.8 3.0 28 166-193 10-37 (57)
7 d1rh5b_ f.23.28.1 (B:) Preprot 2.5 6.6E+02 0.048 15.0 3.2 23 118-140 24-46 (56)
8 d2hsga1 a.35.1.5 (A:2-58) Gluc 2.4 5.6E+02 0.041 15.1 2.6 29 166-194 11-39 (57)
9 d2iuba2 f.17.3.1 (A:286-349) M 2.4 4.3E+02 0.031 15.8 2.1 19 31-49 44-62 (64)
10 d1i8ya_ g.3.16.1 (A:) N-termin 2.4 2.4E+02 0.017 14.1 0.5 6 11-16 17-22 (28)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=8.55 E-value=2.6e+02 Score=17.95 Aligned_cols=10 Identities=10% Similarity=0.105 Sum_probs=5.3
Q ss_pred HHHHHHhChh
Q 036676 281 GFMTDLIGIH 290 (413)
Q Consensus 281 ~~~a~~~g~s 290 (413)
...-+.+|++
T Consensus 57 ~~~L~~~Gi~ 66 (86)
T d2vv5a3 57 IAALGRVGVQ 66 (86)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHHhCCC
Confidence 3334566764
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.66 E-value=47 Score=29.41 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=20.1
Q ss_pred HHHHHhhhcchHHHHHHHHHhcccCchhHHHHH
Q 036676 160 FMGVALSITAFPVLARILAELKLLTTRVGETAM 192 (413)
Q Consensus 160 ~lg~~~s~ts~~vv~~il~~~~~~~~~~~~~~l 192 (413)
.++..-|....|+..+..||+| .+++..+.++
T Consensus 261 Af~T~SS~atlP~~~~~~~~~g-v~~~i~~fvl 292 (405)
T d2nwwa1 261 AFVTRSSSGTLPVTMRVAKEMG-ISEGIYSFTL 292 (405)
T ss_dssp HHHHCCTGGGHHHHHHHHHTTT-CCTTTHHHHT
T ss_pred eeeccccccccHHHHHHHHHcC-CCccccceec
Confidence 3333444555677777777777 6777776544
No 3
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.41 E-value=2e+02 Score=24.92 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=18.4
Q ss_pred hcChHHHHhcCcchhHHHHHHhHHHHHHHHHHHHHhhh
Q 036676 107 ELDLSSIRRSGKRAFVIAFAGISLPFVCGIGVAFVLRN 144 (413)
Q Consensus 107 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (413)
+++-++.+|.+++....-+....+...++......+.+
T Consensus 61 ~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~p 98 (405)
T d2nwwa1 61 SISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNP 98 (405)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred hccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334455555555544444444455555555555543
No 4
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=3.01 E-value=2.1e+02 Score=16.64 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=10.3
Q ss_pred HhhcccCCChhHHH
Q 036676 45 FLFRPLRQPKVIAE 58 (413)
Q Consensus 45 ~l~~r~~iP~ivg~ 58 (413)
.+.+++++|+.++-
T Consensus 21 ~L~~~F~lp~~vAr 34 (46)
T d1e0ea_ 21 ELSHKFGIPNLVAR 34 (46)
T ss_dssp HHHHHTCCCHHHHH
T ss_pred HHHHHcCCCHHHHH
Confidence 45677889988764
No 5
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=2.71 E-value=7.7e+02 Score=18.76 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhcccCCCh----hHHHHHHHHh
Q 036676 34 TLILVVSRFLAFLFRPLRQPK----VIAEIVGGIV 64 (413)
Q Consensus 34 ~~~l~~~~l~~~l~~r~~iP~----ivg~il~Gil 64 (413)
..+.+++..++.++--+++|. ++|++++|++
T Consensus 145 va~~~fs~~~~~~~~~~g~~~~~iGI~g~li~~~v 179 (197)
T d1cola_ 145 VALGIFSATLGAYALSLGVPAIAVGIAGILLAAVV 179 (197)
T ss_dssp HHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 345566777777778888883 4555555554
No 6
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.47 E-value=6.3e+02 Score=14.84 Aligned_cols=28 Identities=0% Similarity=0.173 Sum_probs=19.0
Q ss_pred hhcchHHHHHHHHHhcccCchhHHHHHH
Q 036676 166 SITAFPVLARILAELKLLTTRVGETAMS 193 (413)
Q Consensus 166 s~ts~~vv~~il~~~~~~~~~~~~~~l~ 193 (413)
+-.|++++.++|.+.+.++.+..+.+..
T Consensus 10 agVS~sTVSr~ln~~~~vs~~tr~rV~~ 37 (57)
T d1qpza1 10 ANVSTTTVSHVINKTRFVAEETRNAVWA 37 (57)
T ss_dssp HTSCHHHHHHHHHTCSCCCHHHHHHHHH
T ss_pred HCcCHHHHHHHHCCCCccCHHHHHHHHH
Confidence 4457788888888876666665555543
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.46 E-value=6.6e+02 Score=14.95 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=11.2
Q ss_pred cchhHHHHHHhHHHHHHHHHHHH
Q 036676 118 KRAFVIAFAGISLPFVCGIGVAF 140 (413)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
+++...+..++++.=.+|+.+..
T Consensus 24 ~~ia~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 24 LAVAKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554445555443
No 8
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=2.42 E-value=5.6e+02 Score=15.09 Aligned_cols=29 Identities=3% Similarity=0.150 Sum_probs=20.0
Q ss_pred hhcchHHHHHHHHHhcccCchhHHHHHHH
Q 036676 166 SITAFPVLARILAELKLLTTRVGETAMSA 194 (413)
Q Consensus 166 s~ts~~vv~~il~~~~~~~~~~~~~~l~~ 194 (413)
+-.|++++.+.|.+.+.++.+..+.+...
T Consensus 11 agvS~~TVSr~Ln~~~~Vs~~tr~rV~~a 39 (57)
T d2hsga1 11 ASVSMATVSRVVNGNPNVKPSTRKKVLET 39 (57)
T ss_dssp TTSCHHHHHHHHTTCTTSCHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 45678888889888776666666655543
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.41 E-value=4.3e+02 Score=15.80 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 036676 31 VQTTLILVVSRFLAFLFRP 49 (413)
Q Consensus 31 ~~~~~~l~~~~l~~~l~~r 49 (413)
..+++.+.++...-...||
T Consensus 44 ~~~~~~~~~~~~~~~~f~r 62 (64)
T d2iuba2 44 VVLAVMGVIAVIMVVYFKK 62 (64)
T ss_dssp HHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444444555554455554
No 10
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]}
Probab=2.40 E-value=2.4e+02 Score=14.07 Aligned_cols=6 Identities=67% Similarity=1.409 Sum_probs=0.0
Q ss_pred cCCCcc
Q 036676 11 SSNGVW 16 (413)
Q Consensus 11 ~~~~~~ 16 (413)
+++|+|
T Consensus 17 spygvw 22 (28)
T d1i8ya_ 17 SPYGVW 22 (28)
T ss_dssp CTTSCE
T ss_pred cCcccE
Done!