BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036677
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23685|AP1S2_ARATH AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2
PE=2 SV=1
Length = 162
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 54/78 (69%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
VIRELSG+IL R PKLCNFVEW G Y R Y+ LYFCMC+D +DNE
Sbjct: 31 VIRELSGVILNRGPKLCNFVEWRG--------YKVVYKR-----YASLYFCMCIDQEDNE 77
Query: 61 LEILDIIHHYVEILDLYF 78
LE+L+IIHHYVEILD YF
Sbjct: 78 LEVLEIIHHYVEILDRYF 95
>sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1
PE=2 SV=1
Length = 161
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 53/78 (67%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
VIRELSG+IL R PKLCNF+EW G Y R Y+ LYFCMC+D DNE
Sbjct: 31 VIRELSGVILNRGPKLCNFIEWRG--------YKVVYKR-----YASLYFCMCIDEADNE 77
Query: 61 LEILDIIHHYVEILDLYF 78
LE+L+IIHHYVEILD YF
Sbjct: 78 LEVLEIIHHYVEILDRYF 95
>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2
PE=3 SV=1
Length = 154
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 3 RELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELE 62
RE+ ++L R PKLCNF+EW IIF Y+ LYF +C D +DNEL
Sbjct: 34 REIGNMVLNRPPKLCNFLEWK---EYKIIFKR----------YASLYFVVCCDREDNELI 80
Query: 63 ILDIIHHYVEILDLYF 78
+L+IIHH+VEILD YF
Sbjct: 81 VLEIIHHFVEILDRYF 96
>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vas2 PE=1 SV=1
Length = 162
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+IR++S +++TR PK+CNFVE+ G I++ Y+ L+F ++ DDNE
Sbjct: 32 IIRDVSSLVITRKPKMCNFVEYKG---EKIVYRR----------YASLFFVCGIEQDDNE 78
Query: 61 LEILDIIHHYVEILDLYF 78
L IL++IH +VE LD YF
Sbjct: 79 LIILEVIHKFVECLDKYF 96
>sp|P61967|AP1S1_MOUSE AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1
Length = 158
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
++REL ++L R PK+C+F+EW +++ Y+ LYFC ++ DNE
Sbjct: 31 MVRELMQVVLARKPKMCSFLEWR---DLKVVYKR----------YASLYFCCAIEGQDNE 77
Query: 61 LEILDIIHHYVEILDLYF 78
L L++IH YVE+LD YF
Sbjct: 78 LITLELIHRYVELLDKYF 95
>sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1
Length = 158
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
++REL ++L R PK+C+F+EW +++ Y+ LYFC ++ DNE
Sbjct: 31 MVRELMQVVLARKPKMCSFLEWR---DLKVVYKR----------YASLYFCCAIEGQDNE 77
Query: 61 LEILDIIHHYVEILDLYF 78
L L++IH YVE+LD YF
Sbjct: 78 LITLELIHRYVELLDKYF 95
>sp|Q1JQ98|AP1S1_BOVIN AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1
Length = 157
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
++REL ++L R PK+C+F+EW +++ Y+ LYFC ++ DNE
Sbjct: 30 MVRELMQVVLARKPKMCSFLEWR---DLKVVYKR----------YASLYFCCAIEGQDNE 76
Query: 61 LEILDIIHHYVEILDLYF 78
L L++IH YVE+LD YF
Sbjct: 77 LITLELIHRYVELLDKYF 94
>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1
Length = 160
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+ REL +L R PK+C+F+EW I++ Y+ LYFC ++ DNE
Sbjct: 30 ITRELVQTVLARKPKMCSFLEWRD---LKIVYKR----------YASLYFCCAIEDQDNE 76
Query: 61 LEILDIIHHYVEILDLYF 78
L L+IIH YVE+LD YF
Sbjct: 77 LITLEIIHRYVELLDKYF 94
>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1
Length = 160
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+ REL +L R PK+C+F+EW I++ Y+ LYFC ++ DNE
Sbjct: 30 ITRELVQTVLARKPKMCSFLEWRD---LKIVYKR----------YASLYFCCAIEDQDNE 76
Query: 61 LEILDIIHHYVEILDLYF 78
L L+IIH YVE+LD YF
Sbjct: 77 LITLEIIHRYVELLDKYF 94
>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1
Length = 157
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+ REL +L R PK+C+F+EW I++ Y+ LYFC ++ DNE
Sbjct: 30 ITRELVQTVLARKPKMCSFLEWRD---LKIVYKR----------YASLYFCCAIEDQDNE 76
Query: 61 LEILDIIHHYVEILDLYF 78
L L+IIH YVE+LD YF
Sbjct: 77 LITLEIIHRYVELLDKYF 94
>sp|P35181|AP1S1_YEAST AP-1 complex subunit sigma-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APS1 PE=1 SV=1
Length = 156
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 14/79 (17%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPD-DN 59
++++L+ IL R PK+CN +E+N + Y R Y+ LYF + + PD DN
Sbjct: 33 IVKDLTPTILARKPKMCNIIEYND--------HKVVYKR-----YASLYFIVGMTPDVDN 79
Query: 60 ELEILDIIHHYVEILDLYF 78
EL L+IIH +VE +D YF
Sbjct: 80 ELLTLEIIHRFVETMDTYF 98
>sp|Q9Y7L6|AP2S_SCHPO AP-2 complex subunit sigma OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=aps2 PE=3 SV=1
Length = 143
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 14/72 (19%)
Query: 8 IILTRSPKL-CNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEILDI 66
+I R+ K NF+EW N+K R Y+GLYFC CVD DN+L IL++
Sbjct: 38 LISQRNQKFQANFLEWE---------NSKLVYRR----YAGLYFCFCVDSTDNDLAILEM 84
Query: 67 IHHYVEILDLYF 78
IH +VEILD +F
Sbjct: 85 IHFFVEILDSFF 96
>sp|P62744|AP2S1_RAT AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2
SV=1
Length = 142
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+I E+ ++ R K NFVE+ N K R Y+GLYFC+CVD +DN
Sbjct: 31 LIEEVHAVVTVRDAKHTNFVEFR---------NFKIIYRR----YAGLYFCICVDVNDNN 77
Query: 61 LEILDIIHHYVEILDLYF 78
L L+ IH++VE+L+ YF
Sbjct: 78 LAYLEAIHNFVEVLNEYF 95
>sp|Q5R940|AP2S1_PONAB AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1
Length = 142
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+I E+ ++ R K NFVE+ N K R Y+GLYFC+CVD +DN
Sbjct: 31 LIEEVHAVVTVRDAKHTNFVEFR---------NFKIIYRR----YAGLYFCICVDVNDNN 77
Query: 61 LEILDIIHHYVEILDLYF 78
L L+ IH++VE+L+ YF
Sbjct: 78 LAYLEAIHNFVEVLNEYF 95
>sp|P62743|AP2S1_MOUSE AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1
Length = 142
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+I E+ ++ R K NFVE+ N K R Y+GLYFC+CVD +DN
Sbjct: 31 LIEEVHAVVTVRDAKHTNFVEFR---------NFKIIYRR----YAGLYFCICVDVNDNN 77
Query: 61 LEILDIIHHYVEILDLYF 78
L L+ IH++VE+L+ YF
Sbjct: 78 LAYLEAIHNFVEVLNEYF 95
>sp|P53680|AP2S1_HUMAN AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2
Length = 142
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+I E+ ++ R K NFVE+ N K R Y+GLYFC+CVD +DN
Sbjct: 31 LIEEVHAVVTVRDAKHTNFVEFR---------NFKIIYRR----YAGLYFCICVDVNDNN 77
Query: 61 LEILDIIHHYVEILDLYF 78
L L+ IH++VE+L+ YF
Sbjct: 78 LAYLEAIHNFVEVLNEYF 95
>sp|Q17QC5|AP2S1_BOVIN AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1
Length = 142
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+I E+ ++ R K NFVE+ N K R Y+GLYFC+CVD +DN
Sbjct: 31 LIEEVHAVVTVRDAKHTNFVEFR---------NFKIIYRR----YAGLYFCICVDVNDNN 77
Query: 61 LEILDIIHHYVEILDLYF 78
L L+ IH++VE+L+ YF
Sbjct: 78 LAYLEAIHNFVEVLNEYF 95
>sp|Q96PC3|AP1S3_HUMAN AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1
Length = 154
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+ RE+ IIL+R + +FV+W +++ Y+ LYFC ++ DNE
Sbjct: 31 ITREIVQIILSRGHRTSSFVDWK---ELKLVYKR----------YASLYFCCAIENQDNE 77
Query: 61 LEILDIIHHYVEILDLYF 78
L L+I+H YVE+LD YF
Sbjct: 78 LLTLEIVHRYVELLDKYF 95
>sp|Q54WW3|AP1S1_DICDI AP-1 complex subunit sigma-1 OS=Dictyostelium discoideum GN=ap1s1
PE=3 SV=1
Length = 156
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 19/79 (24%)
Query: 3 RELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIY---SGLYFCMCVDPDDN 59
RE+ +L+RSPK CNFV+W RE I+Y + L+F M D DN
Sbjct: 33 REVMNQVLSRSPKFCNFVQW----------------REFTIVYQRFASLFFVMVTDSTDN 76
Query: 60 ELEILDIIHHYVEILDLYF 78
EL L+ I +V +LD+ F
Sbjct: 77 ELVTLESIQRFVVVLDIVF 95
>sp|Q54H39|AP2S_DICDI AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1
PE=3 SV=2
Length = 142
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 13/75 (17%)
Query: 4 ELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEI 63
E+ I+ +R K NFVE+ + Y R Y+GL+F +CVDP DNEL
Sbjct: 34 EIHKIVNSRETKFTNFVEFRT--------HRIVYRR-----YAGLFFSVCVDPTDNELFC 80
Query: 64 LDIIHHYVEILDLYF 78
L+ IH +VE+LD YF
Sbjct: 81 LEAIHLFVEVLDAYF 95
>sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma OS=Zea mays GN=AP-17 PE=2 SV=1
Length = 132
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 13/75 (17%)
Query: 4 ELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEI 63
E+ +++ R PK NFVE+ + Y R Y+GL+F +CVD DNEL
Sbjct: 34 EVHRLVVNRDPKFTNFVEFRT--------HKVIYRR-----YAGLFFSICVDITDNELAY 80
Query: 64 LDIIHHYVEILDLYF 78
L+ IH +VEILD +F
Sbjct: 81 LECIHLFVEILDHFF 95
>sp|Q4ICG5|AP2S_GIBZE AP-2 complex subunit sigma OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=APS2 PE=3 SV=1
Length = 143
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 14/76 (18%)
Query: 4 ELSGIILTRSPK-LCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELE 62
E+ ++ R K NFVE+ N Y R Y+GL+FC CVD +DNEL
Sbjct: 34 EVHRLVAPRDQKYQSNFVEFRN--------NKIVYRR-----YAGLFFCACVDTNDNELA 80
Query: 63 ILDIIHHYVEILDLYF 78
L+ IH +VE+LD +F
Sbjct: 81 FLEAIHFFVEVLDAFF 96
>sp|Q4WS49|AP2S_ASPFU AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=aps2
PE=3 SV=1
Length = 145
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
Query: 4 ELSGIILTRSPKL-CNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELE 62
E+ ++ R K NFVE+ T I++ Y+GL+FC+CVD DNEL
Sbjct: 35 EVHRLVAPRDQKYQSNFVEFKRS--TKIVYRR----------YAGLFFCVCVDATDNELA 82
Query: 63 ILDIIHHYVEILDLYF 78
L+ IH +VE+LD +F
Sbjct: 83 YLEAIHFFVEVLDQFF 98
>sp|Q5BFF8|AP2S_EMENI AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aps2
PE=3 SV=1
Length = 145
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 13/76 (17%)
Query: 4 ELSGIILTRSPKL-CNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELE 62
E+ ++ R K NFVE+ T I++ Y+GL+FC CVD DNEL
Sbjct: 35 EVHRLVAPRDQKYQSNFVEFKRS--TKIVYRR----------YAGLFFCACVDATDNELA 82
Query: 63 ILDIIHHYVEILDLYF 78
L+ IH +VE+LD +F
Sbjct: 83 YLEAIHFFVEVLDQFF 98
>sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2
SV=1
Length = 142
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 13/75 (17%)
Query: 4 ELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEI 63
E+ +++ R K NFVE+ + Y R Y+GL+F +CVD DNEL
Sbjct: 34 EVHRLVVNRDAKFTNFVEFRT--------HKVIYRR-----YAGLFFSVCVDITDNELAY 80
Query: 64 LDIIHHYVEILDLYF 78
L+ IH +VEILD +F
Sbjct: 81 LESIHLFVEILDHFF 95
>sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1
Length = 154
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+ R++ +L+R + +F++W +++ Y+ LYFC ++ DNE
Sbjct: 31 ITRDIIQTVLSRGHRTSSFIDWK---ELKLVYKR----------YASLYFCCAIENQDNE 77
Query: 61 LEILDIIHHYVEILDLYF 78
L L+I+H YVE+LD YF
Sbjct: 78 LLTLEIVHRYVELLDKYF 95
>sp|Q7SAQ1|AP2S_NEUCR AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=aps-2 PE=3 SV=1
Length = 143
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 14/76 (18%)
Query: 4 ELSGIILTRSPKL-CNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELE 62
E+ ++ R K NFVE+ N K R Y+GL+FC CVD +DNEL
Sbjct: 34 EIHRLVAPRDQKYQSNFVEFR---------NHKVVYRR----YAGLFFCACVDTNDNELA 80
Query: 63 ILDIIHHYVEILDLYF 78
L+ IH +VE+LD +F
Sbjct: 81 YLEAIHFFVEVLDSFF 96
>sp|Q1JQA3|AP3S2_BOVIN AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1
Length = 193
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWN---GGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPD 57
++RE ++L R +CNF+E GG +I+ Y+ LYF CVD
Sbjct: 31 IVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRH----------YATLYFVFCVDSS 80
Query: 58 DNELEILDIIHHYVEILDLYF 78
++EL ILD+I +VE LD F
Sbjct: 81 ESELGILDLIQVFVETLDKCF 101
>sp|Q5RDP9|AP3S2_PONAB AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1
Length = 193
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWN---GGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPD 57
++RE ++L R +CNF+E GG +I+ Y+ LYF CVD
Sbjct: 31 IVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRH----------YATLYFVFCVDSS 80
Query: 58 DNELEILDIIHHYVEILDLYF 78
++EL ILD+I +VE LD F
Sbjct: 81 ESELGILDLIQVFVETLDKCF 101
>sp|Q8BSZ2|AP3S2_MOUSE AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1
Length = 193
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWN---GGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPD 57
++RE ++L R +CNF+E GG +I+ Y+ LYF CVD
Sbjct: 31 IVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRH----------YATLYFVFCVDSS 80
Query: 58 DNELEILDIIHHYVEILDLYF 78
++EL ILD+I +VE LD F
Sbjct: 81 ESELGILDLIQVFVETLDKCF 101
>sp|P59780|AP3S2_HUMAN AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1
Length = 193
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 1 VIRELSGIILTRSPKLCNFVEWN---GGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPD 57
++RE ++L R +CNF+E GG +I+ Y+ LYF CVD
Sbjct: 31 IVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRH----------YATLYFVFCVDSS 80
Query: 58 DNELEILDIIHHYVEILDLYF 78
++EL ILD+I +VE LD F
Sbjct: 81 ESELGILDLIQVFVETLDKCF 101
>sp|Q553S2|AP3S_DICDI AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1
PE=3 SV=1
Length = 171
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIY---SGLYFCMCVDPD 57
+IREL ++ R+ + CNF+E N+ + ++ IIY + L+F CVD
Sbjct: 31 IIRELFLLVSKRTERSCNFLEIGN--------NSNIFDKDTKIIYRHYATLFFIFCVDSS 82
Query: 58 DNELEILDIIHHYVEILDLYF 78
++EL I+D+I +VE LD F
Sbjct: 83 ESELSIIDLIQTFVESLDKCF 103
>sp|Q9DCR2|AP3S1_MOUSE AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap3s1 PE=1 SV=2
Length = 193
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+IRE ++ R +CNF+E GGL N Y Y+ LYF CVD ++E
Sbjct: 31 IIRETFHLVSKRDENVCNFLE--GGLLIGGSDNKLIYRH-----YATLYFVFCVDSSESE 83
Query: 61 LEILDIIHHYVEILDLYF 78
L ILD+I +VE LD F
Sbjct: 84 LGILDLIQVFVETLDKCF 101
>sp|Q92572|AP3S1_HUMAN AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP3S1 PE=1 SV=1
Length = 193
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+IRE ++ R +CNF+E GGL N Y Y+ LYF CVD ++E
Sbjct: 31 IIRETFHLVSKRDENVCNFLE--GGLLIGGSDNKLIYRH-----YATLYFVFCVDSSESE 83
Query: 61 LEILDIIHHYVEILDLYF 78
L ILD+I +VE LD F
Sbjct: 84 LGILDLIQVFVETLDKCF 101
>sp|Q2YDH6|AP3S1_BOVIN AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S1 PE=2 SV=1
Length = 193
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNE 60
+IRE ++ R +CNF+E GGL N Y Y+ LYF CVD ++E
Sbjct: 31 IIRETFHLVSKRDENVCNFLE--GGLLIGGSDNKLIYRH-----YATLYFVFCVDSSESE 83
Query: 61 LEILDIIHHYVEILDLYF 78
L ILD+I +VE LD F
Sbjct: 84 LGILDLIQVFVETLDKCF 101
>sp|Q54NZ4|AP4S_DICDI AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1
PE=3 SV=1
Length = 139
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 13/66 (19%)
Query: 10 LTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEILDIIHH 69
L+R+ C+FVE+ +I+ Y+ L+F + VD +NEL IL++IH+
Sbjct: 41 LSRTEIQCSFVEYKD---YKVIYRK----------YATLFFIVGVDTTENELAILELIHN 87
Query: 70 YVEILD 75
YVEILD
Sbjct: 88 YVEILD 93
>sp|Q09905|AP3S_SCHPO AP-3 complex subunit sigma OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=aps3 PE=3 SV=1
Length = 165
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIY---SGLYFCMCVDPD 57
+I ++ + TR P CNF+E N +N IIY + LYF VD
Sbjct: 31 LIGDIYAAVSTRPPTACNFLESN------------LIAGKNRIIYRQYATLYFVFVVDEG 78
Query: 58 DNELEILDIIHHYVEILD 75
++EL ILD+I +VE LD
Sbjct: 79 ESELGILDLIQVFVEALD 96
>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
PE=2 SV=1
Length = 143
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 17/80 (21%)
Query: 3 RELSGII----LTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDD 58
R L G I L R+ + C+FVE N K R Y+ L+F + VD D+
Sbjct: 30 RALEGEIVRKCLARNDQQCSFVEHR---------NYKIVYRR----YASLFFMVGVDDDE 76
Query: 59 NELEILDIIHHYVEILDLYF 78
NEL IL+ IH VE +D +F
Sbjct: 77 NELAILEFIHLLVETMDKHF 96
>sp|Q9WVL1|AP4S1_MOUSE AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1
Length = 144
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 13/75 (17%)
Query: 4 ELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEI 63
E+S L+RS + C+F+E+ + K R+ Y+ L+ + V+ +NE+ I
Sbjct: 34 EVSKSCLSRSSEQCSFIEYK---------DFKLIYRQ----YAALFVVVGVNDTENEMAI 80
Query: 64 LDIIHHYVEILDLYF 78
+ IH++VE+LD YF
Sbjct: 81 YEFIHNFVEVLDGYF 95
>sp|Q9Y587|AP4S1_HUMAN AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1
Length = 144
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 10 LTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEILDIIHH 69
L+RS + C+F+E+ + K R+ Y+ L+ + V+ +NE+ I + IH+
Sbjct: 40 LSRSNEQCSFIEYK---------DFKLIYRQ----YAALFIVVGVNDTENEMAIYEFIHN 86
Query: 70 YVEILDLYF 78
+VE+LD YF
Sbjct: 87 FVEVLDEYF 95
>sp|Q3ZBB6|AP4S1_BOVIN AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1
Length = 144
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 10 LTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEILDIIHH 69
L+RS + C+F+E+ + K R+ Y+ L+ + V+ +NE+ I + IH+
Sbjct: 40 LSRSNEQCSFIEYK---------DFKLIYRQ----YAALFIVVGVNDTENEMAIYEFIHN 86
Query: 70 YVEILDLYF 78
+VE+LD YF
Sbjct: 87 FVEVLDDYF 95
>sp|Q75F71|AP3S_ASHGO AP-3 complex subunit sigma OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APS3 PE=3 SV=1
Length = 185
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 45 YSGLYFCMCVDPDDNELEILDIIHHYVEILDLYF 78
Y+ LYF VD ++EL ILD+I +VE LD F
Sbjct: 76 YATLYFTFIVDDQESELAILDLIQTFVEALDRCF 109
>sp|P47064|AP3S_YEAST AP-3 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS3 PE=1 SV=1
Length = 194
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 45 YSGLYFCMCVDPDDNELEILDIIHHYVEILD 75
Y+ LYF VD ++EL ILD+I +VE LD
Sbjct: 80 YATLYFTFIVDDQESELAILDLIQTFVESLD 110
>sp|Q00381|AP2S_YEAST AP-2 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS2 PE=1 SV=1
Length = 147
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 1 VIRELSGIILTRSPK-LCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDN 59
I ++ +I +R K NFVE++ T +I+ Y+GLYF M VD D+
Sbjct: 34 AIAQIYRLISSRDHKHQSNFVEFSD--STKLIYRR----------YAGLYFVMGVDLLDD 81
Query: 60 ELEILDIIHHYVEILDLYF 78
E L IH +VE+LD +F
Sbjct: 82 EPIYLCHIHLFVEVLDAFF 100
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 1 VIRELSGIILTRSPKLCNFVEWNG--GLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDD 58
+IR + ++ +R + NF+E G + +++ Y+ LYF + D +
Sbjct: 31 LIRGVFSVLCSRPENVSNFLEIESLFGPDSRLVYKH----------YATLYFVLVFDGSE 80
Query: 59 NELEILDIIHHYVEILDLYF 78
NEL +LD+I VE LD F
Sbjct: 81 NELAMLDLIQVLVETLDKCF 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.149 0.484
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,355,369
Number of Sequences: 539616
Number of extensions: 1173586
Number of successful extensions: 2594
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2524
Number of HSP's gapped (non-prelim): 48
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)